Query psy629
Match_columns 166
No_of_seqs 102 out of 239
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:38:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07555 NAGidase: beta-N-acet 100.0 3.5E-64 7.6E-69 430.5 14.3 160 1-165 29-193 (306)
2 KOG3698|consensus 100.0 2.8E-58 6.1E-63 414.3 10.5 165 1-165 47-211 (891)
3 PLN02746 hydroxymethylglutaryl 95.2 0.3 6.4E-06 43.1 11.0 87 5-94 140-226 (347)
4 PRK05692 hydroxymethylglutaryl 94.1 0.72 1.6E-05 39.4 10.5 86 6-94 99-184 (287)
5 cd07939 DRE_TIM_NifV Streptomy 94.1 0.94 2E-05 37.7 11.0 82 4-94 87-168 (259)
6 cd07938 DRE_TIM_HMGL 3-hydroxy 94.0 0.88 1.9E-05 38.5 10.8 87 5-94 92-178 (274)
7 cd07941 DRE_TIM_LeuA3 Desulfob 93.8 0.83 1.8E-05 38.5 10.2 83 5-93 97-179 (273)
8 PF09863 DUF2090: Uncharacteri 93.5 0.41 8.8E-06 41.7 7.8 63 5-79 148-210 (311)
9 PRK11572 copper homeostasis pr 93.0 1.3 2.7E-05 37.6 9.9 53 39-92 49-102 (248)
10 cd07940 DRE_TIM_IPMS 2-isoprop 92.5 1.6 3.4E-05 36.5 9.9 96 5-119 92-187 (268)
11 cd07945 DRE_TIM_CMS Leptospira 92.3 2.6 5.7E-05 35.8 11.1 83 5-93 93-175 (280)
12 PF03932 CutC: CutC family; I 91.5 1.9 4.2E-05 35.3 9.1 116 38-161 47-177 (201)
13 PRK11858 aksA trans-homoaconit 90.5 3.6 7.8E-05 36.4 10.5 82 4-94 93-174 (378)
14 cd07948 DRE_TIM_HCS Saccharomy 90.1 7.5 0.00016 32.7 11.7 81 5-94 90-170 (262)
15 cd06593 GH31_xylosidase_YicI Y 89.0 8.4 0.00018 32.7 11.3 108 20-132 63-212 (308)
16 cd06597 GH31_transferase_CtsY 88.9 13 0.00029 32.3 12.6 104 29-132 86-239 (340)
17 PRK15452 putative protease; Pr 88.8 3.4 7.4E-05 37.6 9.2 58 21-88 42-99 (443)
18 COG3142 CutC Uncharacterized p 88.5 5.6 0.00012 33.6 9.5 51 35-86 45-98 (241)
19 cd07937 DRE_TIM_PC_TC_5S Pyruv 87.0 6.3 0.00014 33.2 9.3 71 18-94 108-178 (275)
20 COG0826 Collagenase and relate 86.0 3 6.6E-05 36.8 7.0 119 21-162 45-171 (347)
21 PF00682 HMGL-like: HMGL-like 86.0 11 0.00025 30.3 10.0 99 4-121 85-183 (237)
22 cd06589 GH31 The enzymes of gl 84.7 9 0.0002 31.9 9.0 96 28-132 66-174 (265)
23 TIGR02660 nifV_homocitr homoci 84.7 4.6 9.9E-05 35.5 7.5 82 4-94 90-171 (365)
24 cd06600 GH31_MGAM-like This fa 84.4 18 0.0004 31.0 11.0 99 29-132 65-203 (317)
25 cd03174 DRE_TIM_metallolyase D 83.6 22 0.00048 28.8 11.5 83 6-95 94-176 (265)
26 PF10096 DUF2334: Uncharacteri 82.9 16 0.00035 30.3 9.8 110 23-132 11-134 (243)
27 PRK00915 2-isopropylmalate syn 82.7 19 0.00041 33.3 10.9 80 5-93 98-177 (513)
28 cd06592 GH31_glucosidase_KIAA1 80.8 5.6 0.00012 33.9 6.4 58 29-86 71-165 (303)
29 TIGR02090 LEU1_arch isopropylm 80.5 14 0.0003 32.6 8.9 82 5-95 90-171 (363)
30 PRK06233 hypothetical protein; 79.8 37 0.00079 30.0 11.4 72 63-136 171-255 (372)
31 cd06591 GH31_xylosidase_XylS X 78.6 37 0.00081 29.1 10.9 101 29-132 67-218 (319)
32 cd06598 GH31_transferase_CtsZ 78.0 44 0.00094 28.7 12.2 63 19-86 66-164 (317)
33 smart00518 AP2Ec AP endonuclea 77.5 13 0.00028 30.5 7.4 47 27-74 83-129 (273)
34 cd08577 PI-PLCc_GDPD_SF_unchar 75.9 16 0.00034 30.3 7.5 51 18-81 175-225 (228)
35 TIGR00977 LeuA_rel 2-isopropyl 75.4 38 0.00082 31.5 10.6 84 5-93 100-183 (526)
36 cd07943 DRE_TIM_HOA 4-hydroxy- 74.7 38 0.00082 28.1 9.6 69 18-94 102-170 (263)
37 PRK09389 (R)-citramalate synth 74.2 14 0.0003 34.0 7.4 81 4-93 91-171 (488)
38 PF01261 AP_endonuc_2: Xylose 74.0 12 0.00026 28.6 6.0 93 25-130 68-167 (213)
39 COG3589 Uncharacterized conser 73.3 23 0.00051 31.5 8.2 124 25-163 46-181 (360)
40 TIGR01370 cysRS possible cyste 72.3 7.8 0.00017 33.9 5.0 68 58-127 142-212 (315)
41 PRK00380 panC pantoate--beta-a 71.5 7.1 0.00015 33.5 4.5 97 32-129 39-177 (281)
42 TIGR02456 treS_nterm trehalose 71.4 23 0.00049 32.7 8.1 30 53-82 167-196 (539)
43 PRK14041 oxaloacetate decarbox 69.9 41 0.00089 30.9 9.3 71 18-94 112-182 (467)
44 cd00019 AP2Ec AP endonuclease 69.8 21 0.00046 29.4 7.0 48 27-75 84-131 (279)
45 PF05913 DUF871: Bacterial pro 68.7 5.2 0.00011 35.5 3.2 50 24-81 43-94 (357)
46 cd07942 DRE_TIM_LeuA Mycobacte 68.7 9 0.00019 32.8 4.6 83 4-92 97-190 (284)
47 PRK13210 putative L-xylulose 5 68.6 26 0.00057 28.6 7.3 51 27-85 132-182 (284)
48 COG0196 RibF FAD synthase [Coe 68.5 61 0.0013 28.2 9.7 106 28-150 33-144 (304)
49 PRK03906 mannonate dehydratase 68.4 17 0.00037 32.6 6.4 50 28-85 214-271 (385)
50 PLN03228 methylthioalkylmalate 68.4 21 0.00046 33.1 7.2 82 5-94 187-268 (503)
51 PRK02308 uvsE putative UV dama 68.3 15 0.00033 31.7 5.9 49 28-78 91-145 (303)
52 cd07944 DRE_TIM_HOA_like 4-hyd 68.0 58 0.0013 27.3 9.3 69 18-94 99-167 (266)
53 KOG3111|consensus 67.9 4.4 9.6E-05 33.6 2.4 51 28-78 99-169 (224)
54 TIGR00345 arsA arsenite-activa 67.8 74 0.0016 26.8 11.0 96 41-151 189-284 (284)
55 PRK09431 asnB asparagine synth 67.3 59 0.0013 30.4 10.0 56 26-86 208-277 (554)
56 COG1535 EntB Isochorismate hyd 66.0 21 0.00046 29.4 5.9 36 17-52 45-82 (218)
57 cd06568 GH20_SpHex_like A subg 66.0 87 0.0019 27.2 10.2 83 21-117 71-184 (329)
58 PRK10658 putative alpha-glucos 65.4 23 0.00051 33.9 7.1 54 29-82 326-414 (665)
59 cd07947 DRE_TIM_Re_CS Clostrid 65.4 21 0.00045 30.4 6.1 82 5-89 93-175 (279)
60 PF03786 UxuA: D-mannonate deh 65.0 14 0.0003 32.9 5.1 76 5-83 7-105 (351)
61 TIGR00973 leuA_bact 2-isopropy 65.0 29 0.00064 31.9 7.4 80 5-93 95-174 (494)
62 PF04914 DltD_C: DltD C-termin 64.3 7.8 0.00017 29.6 3.0 58 22-79 30-92 (130)
63 PRK12331 oxaloacetate decarbox 64.0 49 0.0011 30.2 8.6 71 18-94 113-183 (448)
64 cd06294 PBP1_ycjW_transcriptio 63.8 70 0.0015 25.1 9.0 56 33-88 75-133 (270)
65 cd06599 GH31_glycosidase_Aec37 63.5 30 0.00066 29.6 6.9 62 20-86 70-168 (317)
66 PRK09997 hydroxypyruvate isome 63.2 45 0.00097 27.2 7.6 56 25-82 82-142 (258)
67 cd06292 PBP1_LacI_like_10 Liga 63.0 74 0.0016 25.1 9.1 123 32-160 74-216 (273)
68 PF01120 Alpha_L_fucos: Alpha- 62.9 11 0.00024 32.8 4.2 26 26-51 136-161 (346)
69 COG3892 Uncharacterized protei 62.6 13 0.00028 32.1 4.3 51 24-78 150-200 (310)
70 PRK12344 putative alpha-isopro 62.6 1E+02 0.0022 28.7 10.6 84 5-94 104-187 (524)
71 PRK12330 oxaloacetate decarbox 62.2 80 0.0017 29.4 9.7 63 22-94 118-184 (499)
72 TIGR00970 leuA_yeast 2-isoprop 61.2 38 0.00082 31.8 7.5 123 5-129 123-273 (564)
73 PF14871 GHL6: Hypothetical gl 61.0 11 0.00024 28.7 3.3 27 27-53 43-69 (132)
74 cd06270 PBP1_GalS_like Ligand 61.0 81 0.0018 24.9 9.7 55 34-88 71-127 (268)
75 PF02896 PEP-utilizers_C: PEP- 60.7 15 0.00033 31.7 4.5 60 16-87 223-282 (293)
76 PRK08195 4-hyroxy-2-oxovalerat 60.7 96 0.0021 27.1 9.6 69 19-95 106-174 (337)
77 COG3254 Uncharacterized conser 60.4 17 0.00037 27.0 4.1 41 42-88 4-49 (105)
78 PF03932 CutC: CutC family; I 59.9 19 0.00042 29.4 4.8 29 22-50 66-96 (201)
79 TIGR03104 trio_amidotrans aspa 59.8 61 0.0013 30.4 8.7 51 29-87 248-298 (589)
80 PF00128 Alpha-amylase: Alpha 59.5 14 0.00031 29.7 4.0 25 26-50 50-74 (316)
81 PRK14040 oxaloacetate decarbox 59.5 81 0.0018 29.9 9.4 60 25-94 121-184 (593)
82 PRK13209 L-xylulose 5-phosphat 59.4 37 0.0008 27.9 6.5 51 27-85 137-187 (283)
83 PRK05628 coproporphyrinogen II 59.3 24 0.00053 30.7 5.6 60 12-83 131-195 (375)
84 TIGR00695 uxuA mannonate dehyd 59.2 44 0.00095 30.2 7.3 62 20-84 38-104 (394)
85 cd06569 GH20_Sm-chitobiase-lik 59.1 98 0.0021 28.2 9.6 92 27-118 96-251 (445)
86 PRK09856 fructoselysine 3-epim 58.8 49 0.0011 27.0 7.1 53 27-88 128-183 (275)
87 cd06287 PBP1_LacI_like_8 Ligan 58.3 98 0.0021 25.0 10.1 54 34-87 72-128 (269)
88 PRK09989 hypothetical protein; 58.2 61 0.0013 26.4 7.6 55 26-86 122-179 (258)
89 TIGR01108 oadA oxaloacetate de 57.5 64 0.0014 30.5 8.4 66 23-94 113-178 (582)
90 PF01055 Glyco_hydro_31: Glyco 57.2 1.3E+02 0.0027 26.7 9.9 60 29-88 84-182 (441)
91 COG1312 UxuA D-mannonate dehyd 57.1 28 0.0006 31.1 5.5 75 5-85 7-105 (362)
92 PRK09444 pntB pyridine nucleot 57.1 12 0.00026 34.4 3.4 23 28-50 324-346 (462)
93 PRK13347 coproporphyrinogen II 56.4 36 0.00078 30.7 6.4 60 12-83 175-239 (453)
94 PLN02321 2-isopropylmalate syn 56.3 45 0.00098 31.9 7.2 81 5-92 188-268 (632)
95 cd06565 GH20_GcnA-like Glycosy 55.5 1.3E+02 0.0028 25.6 10.1 98 19-119 54-176 (301)
96 PF07693 KAP_NTPase: KAP famil 55.4 55 0.0012 27.2 7.0 55 59-124 153-207 (325)
97 smart00642 Aamy Alpha-amylase 55.1 19 0.00041 28.1 3.9 25 27-51 69-93 (166)
98 TIGR02417 fruct_sucro_rep D-fr 55.0 1.2E+02 0.0026 25.0 10.2 53 34-86 133-187 (327)
99 cd03016 PRX_1cys Peroxiredoxin 55.0 68 0.0015 25.5 7.2 28 22-50 40-67 (203)
100 PF00150 Cellulase: Cellulase 54.9 21 0.00046 28.7 4.3 54 21-74 55-117 (281)
101 TIGR00433 bioB biotin syntheta 54.1 68 0.0015 26.6 7.3 52 21-85 91-142 (296)
102 COG2355 Zn-dependent dipeptida 54.1 8.3 0.00018 33.8 1.8 55 60-114 105-162 (313)
103 cd06564 GH20_DspB_LnbB-like Gl 53.4 1.5E+02 0.0031 25.5 9.9 88 20-119 77-191 (326)
104 cd06563 GH20_chitobiase-like T 53.4 1.5E+02 0.0033 25.8 10.6 92 27-118 85-215 (357)
105 smart00729 Elp3 Elongator prot 53.1 94 0.002 23.2 8.2 51 27-82 135-186 (216)
106 cd06562 GH20_HexA_HexB-like Be 52.6 1.6E+02 0.0034 25.7 9.8 93 27-119 69-200 (348)
107 TIGR02403 trehalose_treC alpha 52.6 80 0.0017 29.3 8.1 24 27-50 74-97 (543)
108 PRK09722 allulose-6-phosphate 52.3 16 0.00035 30.4 3.2 26 28-53 95-120 (229)
109 PRK10339 DNA-binding transcrip 52.1 1.4E+02 0.0029 24.8 10.4 118 35-158 130-267 (327)
110 cd06296 PBP1_CatR_like Ligand- 52.1 1.1E+02 0.0025 23.9 10.0 55 34-88 71-128 (270)
111 PRK01060 endonuclease IV; Prov 51.9 63 0.0014 26.4 6.7 45 27-72 88-133 (281)
112 PRK12581 oxaloacetate decarbox 51.9 1.2E+02 0.0026 28.0 9.0 59 26-94 130-192 (468)
113 PF00004 AAA: ATPase family as 51.8 40 0.00088 23.6 4.9 54 37-92 19-72 (132)
114 COG5016 Pyruvate/oxaloacetate 51.7 1.1E+02 0.0023 28.3 8.4 54 30-93 127-184 (472)
115 PRK08629 coproporphyrinogen II 51.7 50 0.0011 29.8 6.5 57 21-86 177-237 (433)
116 PRK10933 trehalose-6-phosphate 51.3 87 0.0019 29.2 8.2 30 53-82 170-199 (551)
117 cd01575 PBP1_GntR Ligand-bindi 51.2 1.2E+02 0.0025 23.7 9.5 53 33-88 70-127 (268)
118 PF07637 PSD5: Protein of unkn 50.9 23 0.00049 23.5 3.2 36 13-48 10-45 (64)
119 PRK12465 xylose isomerase; Pro 50.4 2.1E+02 0.0045 26.4 10.1 101 61-163 87-200 (445)
120 cd01828 sialate_O-acetylestera 50.3 1E+02 0.0022 22.9 7.2 57 23-79 67-127 (169)
121 PRK09282 pyruvate carboxylase 50.3 1.1E+02 0.0025 28.9 8.8 67 18-94 113-183 (592)
122 PRK01060 endonuclease IV; Prov 50.2 46 0.001 27.3 5.6 62 21-85 43-111 (281)
123 PRK12858 tagatose 1,6-diphosph 50.0 77 0.0017 27.9 7.2 60 24-83 139-206 (340)
124 PRK13125 trpA tryptophan synth 49.9 28 0.00061 28.7 4.3 27 27-53 115-141 (244)
125 PRK08446 coproporphyrinogen II 49.4 40 0.00087 29.3 5.3 54 18-83 127-185 (350)
126 PRK14989 nitrite reductase sub 49.3 63 0.0014 31.9 7.2 48 27-79 578-627 (847)
127 PF02233 PNTB: NAD(P) transhyd 49.3 20 0.00043 33.1 3.5 23 28-50 325-347 (463)
128 PRK15381 pathogenicity island 48.4 64 0.0014 29.2 6.6 55 61-115 259-317 (408)
129 PRK05660 HemN family oxidoredu 48.3 45 0.00098 29.3 5.6 56 16-83 134-194 (378)
130 PF04315 DUF462: Protein of un 48.0 51 0.0011 26.3 5.2 99 5-107 22-129 (164)
131 PLN02361 alpha-amylase 47.9 1.1E+02 0.0024 27.5 8.0 22 27-48 75-96 (401)
132 COG0119 LeuA Isopropylmalate/h 47.8 95 0.0021 28.1 7.6 82 4-93 94-175 (409)
133 TIGR01949 AroFGH_arch predicte 47.4 80 0.0017 26.1 6.7 58 23-83 118-176 (258)
134 PRK13575 3-dehydroquinate dehy 47.3 74 0.0016 26.4 6.4 47 28-79 112-158 (238)
135 TIGR00587 nfo apurinic endonuc 47.1 94 0.002 25.8 7.1 60 27-88 87-146 (274)
136 TIGR01464 hemE uroporphyrinoge 47.0 1.6E+02 0.0035 25.1 8.7 65 58-125 167-240 (338)
137 PRK02412 aroD 3-dehydroquinate 47.0 67 0.0015 26.7 6.2 47 28-79 122-168 (253)
138 PRK06520 5-methyltetrahydropte 47.0 96 0.0021 27.4 7.4 71 63-135 170-252 (368)
139 TIGR03234 OH-pyruv-isom hydrox 46.8 1.3E+02 0.0027 24.3 7.7 55 27-87 122-179 (254)
140 TIGR01093 aroD 3-dehydroquinat 46.7 65 0.0014 26.2 5.9 48 29-81 106-153 (228)
141 PRK08005 epimerase; Validated 46.5 20 0.00044 29.4 2.9 49 28-76 93-161 (210)
142 PRK10426 alpha-glucosidase; Pr 46.5 2.1E+02 0.0046 27.3 10.1 101 29-132 270-416 (635)
143 smart00812 Alpha_L_fucos Alpha 46.5 18 0.0004 32.2 2.8 25 26-50 126-150 (384)
144 PRK06740 histidinol-phosphatas 46.3 88 0.0019 27.2 7.0 19 28-46 239-257 (331)
145 PLN02923 xylose isomerase 46.3 2.4E+02 0.0051 26.2 9.8 99 61-163 121-234 (478)
146 COG2044 Predicted peroxiredoxi 45.9 19 0.00041 27.4 2.4 25 141-165 22-46 (120)
147 cd06289 PBP1_MalI_like Ligand- 45.7 1.4E+02 0.0031 23.2 9.5 52 33-87 71-127 (268)
148 PRK15108 biotin synthase; Prov 45.7 47 0.001 29.0 5.2 21 67-87 137-157 (345)
149 COG2342 Predicted extracellula 45.5 47 0.001 28.9 5.0 68 58-127 121-192 (300)
150 TIGR02066 dsrB sulfite reducta 45.2 32 0.00069 30.2 4.1 66 4-71 21-88 (341)
151 PLN02433 uroporphyrinogen deca 45.1 2E+02 0.0044 24.8 9.7 57 58-117 166-230 (345)
152 cd00842 MPP_ASMase acid sphing 45.1 93 0.002 25.8 6.8 53 20-72 192-249 (296)
153 PLN03109 ETHYLENE-INSENSITIVE3 44.7 49 0.0011 31.2 5.3 31 27-59 93-125 (599)
154 cd06273 PBP1_GntR_like_1 This 44.7 1.5E+02 0.0033 23.2 10.9 54 34-87 71-126 (268)
155 COG3623 SgaU Putative L-xylulo 44.6 2.1E+02 0.0045 24.7 9.3 127 19-153 48-205 (287)
156 cd00840 MPP_Mre11_N Mre11 nucl 44.4 1.5E+02 0.0032 22.9 8.2 59 23-83 23-83 (223)
157 cd02742 GH20_hexosaminidase Be 44.0 2E+02 0.0043 24.4 9.8 86 21-118 68-181 (303)
158 PF10835 DUF2573: Protein of u 43.8 16 0.00035 25.9 1.6 35 6-40 39-79 (82)
159 PRK08207 coproporphyrinogen II 43.6 75 0.0016 29.3 6.4 54 19-84 299-357 (488)
160 PF02065 Melibiase: Melibiase; 43.6 2.4E+02 0.0053 25.3 10.0 102 20-128 100-236 (394)
161 PRK06852 aldolase; Validated 43.6 1E+02 0.0022 26.9 6.9 59 24-84 150-209 (304)
162 PF01261 AP_endonuc_2: Xylose 43.3 1.4E+02 0.0031 22.4 12.1 58 27-85 26-93 (213)
163 cd06594 GH31_glucosidase_YihQ 43.1 2.1E+02 0.0047 24.5 11.1 104 29-132 72-219 (317)
164 TIGR02146 LysS_fung_arch homoc 43.1 1.2E+02 0.0027 25.5 7.4 72 5-83 88-159 (344)
165 COG1282 PntB NAD/NADP transhyd 43.0 24 0.00053 32.0 3.0 22 29-50 327-348 (463)
166 KOG0369|consensus 42.7 51 0.0011 32.5 5.2 67 5-81 62-136 (1176)
167 PRK08446 coproporphyrinogen II 42.4 66 0.0014 27.9 5.6 56 23-89 66-121 (350)
168 PF11020 DUF2610: Domain of un 42.4 27 0.00059 24.8 2.6 41 4-44 20-68 (82)
169 COG1964 Predicted Fe-S oxidore 42.1 2.9E+02 0.0063 25.7 9.8 58 27-92 124-181 (475)
170 TIGR00538 hemN oxygen-independ 41.7 98 0.0021 27.8 6.8 53 19-83 181-238 (455)
171 PRK11449 putative deoxyribonuc 41.5 1.5E+02 0.0033 24.6 7.5 40 29-69 45-85 (258)
172 PF04339 DUF482: Protein of un 41.3 1.7E+02 0.0038 26.1 8.2 51 38-89 157-212 (370)
173 PF13377 Peripla_BP_3: Peripla 41.2 98 0.0021 22.4 5.7 38 119-162 68-105 (160)
174 COG1082 IolE Sugar phosphate i 41.1 1.1E+02 0.0023 24.6 6.4 55 24-86 122-178 (274)
175 PRK03705 glycogen debranching 41.1 1.4E+02 0.003 28.7 8.0 24 26-49 240-263 (658)
176 COG0162 TyrS Tyrosyl-tRNA synt 40.9 80 0.0017 28.6 6.0 51 33-87 24-75 (401)
177 COG0450 AhpC Peroxiredoxin [Po 40.7 60 0.0013 26.6 4.7 44 44-88 36-79 (194)
178 PF00834 Ribul_P_3_epim: Ribul 40.2 20 0.00044 29.1 1.9 27 28-54 92-118 (201)
179 cd06288 PBP1_sucrose_transcrip 40.1 1.8E+02 0.0039 22.7 8.7 51 38-88 75-127 (269)
180 cd02169 Citrate_lyase_ligase C 39.7 1.7E+02 0.0036 25.2 7.6 88 28-127 45-151 (297)
181 TIGR02100 glgX_debranch glycog 39.6 1.5E+02 0.0033 28.5 8.0 24 26-49 243-266 (688)
182 cd06604 GH31_glucosidase_II_Ma 39.6 2.5E+02 0.0054 24.2 11.6 62 20-86 61-159 (339)
183 TIGR03279 cyano_FeS_chp putati 39.3 2.3E+02 0.0049 26.1 8.7 68 10-83 149-220 (433)
184 PRK08883 ribulose-phosphate 3- 39.1 17 0.00037 29.9 1.3 26 28-53 93-118 (220)
185 PF01904 DUF72: Protein of unk 39.0 1.4E+02 0.0031 24.3 6.9 60 31-90 132-218 (230)
186 PRK10425 DNase TatD; Provision 39.0 1.4E+02 0.003 25.0 6.8 23 29-51 41-64 (258)
187 PRK08745 ribulose-phosphate 3- 38.8 31 0.00067 28.5 2.8 26 28-53 97-122 (223)
188 cd06570 GH20_chitobiase-like_1 38.5 2.6E+02 0.0056 24.1 9.2 96 20-118 63-197 (311)
189 PTZ00422 glideosome-associated 38.5 75 0.0016 28.7 5.4 64 24-90 40-111 (394)
190 KOG4013|consensus 37.9 68 0.0015 26.8 4.7 40 41-81 59-99 (255)
191 PRK03906 mannonate dehydratase 37.2 1.4E+02 0.003 26.8 6.9 62 20-84 38-104 (385)
192 COG0420 SbcD DNA repair exonuc 37.2 1.7E+02 0.0036 25.5 7.4 58 24-83 23-82 (390)
193 PRK13210 putative L-xylulose 5 37.1 1.7E+02 0.0037 23.7 7.1 54 26-82 92-151 (284)
194 PRK09437 bcp thioredoxin-depen 37.0 1.6E+02 0.0035 21.7 6.4 30 20-50 43-72 (154)
195 cd06285 PBP1_LacI_like_7 Ligan 37.0 2.1E+02 0.0044 22.5 9.0 55 34-88 71-125 (265)
196 TIGR02402 trehalose_TreZ malto 37.0 33 0.00073 31.8 3.1 38 43-83 94-131 (542)
197 PRK09450 cyaA adenylate cyclas 36.9 1.9E+02 0.0042 28.7 8.3 77 39-130 112-209 (830)
198 PLN02379 pfkB-type carbohydrat 36.9 1.4E+02 0.003 26.1 6.8 23 28-50 191-213 (367)
199 cd06601 GH31_lyase_GLase GLase 36.6 1.4E+02 0.0029 26.1 6.6 54 30-83 66-130 (332)
200 cd07399 MPP_YvnB Bacillus subt 36.4 2.2E+02 0.0048 22.7 14.8 126 22-161 16-156 (214)
201 PLN02229 alpha-galactosidase 36.3 2.9E+02 0.0062 25.3 8.8 61 28-90 128-188 (427)
202 PRK06582 coproporphyrinogen II 36.3 46 0.001 29.5 3.8 52 23-83 146-197 (390)
203 PRK05660 HemN family oxidoredu 36.3 92 0.002 27.4 5.6 51 28-89 75-130 (378)
204 PRK09058 coproporphyrinogen II 36.2 1E+02 0.0022 27.8 6.0 60 15-83 189-250 (449)
205 TIGR00629 uvde UV damage endon 36.1 3E+02 0.0064 24.1 10.4 53 25-79 91-149 (312)
206 TIGR03470 HpnH hopanoid biosyn 35.7 1.1E+02 0.0023 26.3 5.8 48 27-82 148-197 (318)
207 PF05673 DUF815: Protein of un 35.6 1.8E+02 0.0038 24.8 6.9 41 59-100 88-128 (249)
208 PLN02692 alpha-galactosidase 35.5 3.5E+02 0.0075 24.7 9.5 59 28-90 121-182 (412)
209 PF00128 Alpha-amylase: Alpha 35.3 28 0.0006 28.1 2.0 23 61-83 2-24 (316)
210 TIGR03217 4OH_2_O_val_ald 4-hy 35.0 3.1E+02 0.0066 23.9 9.5 70 18-95 104-173 (333)
211 cd01297 D-aminoacylase D-amino 34.5 1.4E+02 0.0031 26.2 6.6 60 21-87 160-222 (415)
212 PRK09989 hypothetical protein; 34.5 1.7E+02 0.0037 23.7 6.7 53 25-78 82-139 (258)
213 TIGR03128 RuMP_HxlA 3-hexulose 34.3 1.3E+02 0.0027 23.6 5.7 43 28-82 89-132 (206)
214 TIGR00238 KamA family protein. 34.2 2.5E+02 0.0055 24.3 7.9 81 29-119 238-319 (331)
215 PF09749 HVSL: Uncharacterised 34.2 2.6E+02 0.0056 22.9 7.7 62 24-88 52-132 (239)
216 cd06593 GH31_xylosidase_YicI Y 34.2 64 0.0014 27.3 4.2 62 13-79 13-82 (308)
217 PRK14042 pyruvate carboxylase 34.1 4.1E+02 0.0089 25.4 9.8 59 26-94 121-183 (596)
218 TIGR00433 bioB biotin syntheta 33.9 1.9E+02 0.0041 23.9 6.9 52 26-83 156-207 (296)
219 PF01697 Glyco_transf_92: Glyc 33.9 74 0.0016 25.9 4.4 26 63-88 18-43 (285)
220 cd06595 GH31_xylosidase_XylS-l 33.9 2.2E+02 0.0048 24.0 7.4 56 29-84 75-157 (292)
221 PRK07328 histidinol-phosphatas 33.9 1.7E+02 0.0036 24.3 6.6 24 27-50 176-199 (269)
222 cd02930 DCR_FMN 2,4-dienoyl-Co 33.7 3.2E+02 0.0069 23.7 9.3 65 20-84 69-158 (353)
223 PRK09441 cytoplasmic alpha-amy 33.6 46 0.00099 30.2 3.3 24 27-50 80-103 (479)
224 cd01537 PBP1_Repressors_Sugar_ 33.6 2.2E+02 0.0047 21.7 10.3 119 33-158 71-211 (264)
225 TIGR02630 xylose_isom_A xylose 33.5 3.1E+02 0.0068 25.2 8.5 100 62-163 77-189 (434)
226 cd01830 XynE_like SGNH_hydrola 33.5 2.2E+02 0.0047 22.1 6.9 52 22-74 100-152 (204)
227 PRK08508 biotin synthase; Prov 33.4 71 0.0015 26.8 4.3 54 25-84 134-187 (279)
228 TIGR02104 pulA_typeI pullulana 33.3 48 0.0011 31.1 3.5 28 23-50 224-251 (605)
229 PRK05474 xylose isomerase; Pro 33.2 3.9E+02 0.0085 24.6 9.9 100 62-163 78-190 (437)
230 TIGR00083 ribF riboflavin kina 33.2 2E+02 0.0043 24.7 7.0 108 27-152 15-129 (288)
231 PF01297 TroA: Periplasmic sol 33.1 2.5E+02 0.0054 22.7 7.4 50 27-90 185-234 (256)
232 COG1501 Alpha-glucosidases, fa 32.9 1.5E+02 0.0033 29.1 6.9 56 31-86 324-415 (772)
233 PTZ00056 glutathione peroxidas 32.8 1.6E+02 0.0034 23.5 6.0 57 21-85 52-110 (199)
234 cd06557 KPHMT-like Ketopantoat 32.5 1.9E+02 0.0041 24.4 6.7 57 29-87 115-180 (254)
235 PF06415 iPGM_N: BPG-independe 32.5 2.5E+02 0.0054 23.4 7.2 53 26-81 44-99 (223)
236 KOG2943|consensus 32.2 26 0.00057 30.0 1.4 64 3-66 199-277 (299)
237 COG0800 Eda 2-keto-3-deoxy-6-p 32.1 55 0.0012 27.2 3.3 37 117-162 125-161 (211)
238 PF00289 CPSase_L_chain: Carba 32.0 85 0.0019 22.9 4.0 42 29-80 62-103 (110)
239 KOG0389|consensus 32.0 77 0.0017 31.5 4.7 82 66-161 408-506 (941)
240 cd06271 PBP1_AglR_RafR_like Li 32.0 2.4E+02 0.0053 21.9 9.8 26 63-88 106-131 (268)
241 PF04504 DUF573: Protein of un 31.9 1.1E+02 0.0024 21.9 4.5 53 23-75 9-71 (98)
242 PRK08091 ribulose-phosphate 3- 31.9 47 0.001 27.7 2.9 26 28-53 103-130 (228)
243 PRK07226 fructose-bisphosphate 31.8 1.6E+02 0.0035 24.5 6.2 57 23-83 121-180 (267)
244 TIGR03108 eps_aminotran_1 exos 31.6 4.4E+02 0.0095 24.7 10.7 53 27-87 240-296 (628)
245 PRK09121 5-methyltetrahydropte 31.5 2.6E+02 0.0057 24.3 7.6 94 20-129 107-215 (339)
246 cd00502 DHQase_I Type I 3-dehy 31.4 1.8E+02 0.004 23.3 6.3 49 29-82 101-149 (225)
247 TIGR00695 uxuA mannonate dehyd 31.4 1.4E+02 0.0031 27.0 6.0 21 28-50 214-234 (394)
248 COG3966 DltD Protein involved 31.2 1.4E+02 0.003 27.1 5.8 104 26-134 293-409 (415)
249 PRK13523 NADPH dehydrogenase N 31.1 88 0.0019 27.3 4.6 64 21-84 74-163 (337)
250 PTZ00077 asparagine synthetase 31.0 4.6E+02 0.01 24.8 10.1 57 25-86 217-285 (586)
251 cd01837 SGNH_plant_lipase_like 31.0 66 0.0014 27.1 3.7 22 62-83 163-184 (315)
252 CHL00200 trpA tryptophan synth 30.9 1.4E+02 0.003 25.3 5.6 25 28-52 131-155 (263)
253 TIGR01212 radical SAM protein, 30.7 2.2E+02 0.0047 24.3 6.9 11 149-159 249-259 (302)
254 cd00423 Pterin_binding Pterin 30.7 2E+02 0.0042 23.8 6.5 54 24-78 146-201 (258)
255 PRK08227 autoinducer 2 aldolas 30.6 2.3E+02 0.005 24.1 6.9 56 24-84 123-179 (264)
256 COG4464 CapC Capsular polysacc 30.5 1.9E+02 0.0042 24.5 6.2 47 27-75 19-65 (254)
257 TIGR02530 flg_new flagellar op 30.4 90 0.0019 22.8 3.8 35 53-88 29-63 (96)
258 PF04748 Polysacc_deac_2: Dive 30.4 85 0.0019 25.6 4.2 46 25-78 159-204 (213)
259 cd06602 GH31_MGAM_SI_GAA This 30.3 3.6E+02 0.0079 23.3 11.5 97 31-132 69-207 (339)
260 PLN02784 alpha-amylase 30.3 2.6E+02 0.0056 28.2 7.9 24 27-50 567-590 (894)
261 PRK14847 hypothetical protein; 30.2 1E+02 0.0022 27.2 4.8 84 4-92 128-221 (333)
262 TIGR00262 trpA tryptophan synt 30.2 77 0.0017 26.5 4.0 26 28-53 127-152 (256)
263 PRK06294 coproporphyrinogen II 30.2 1.4E+02 0.003 26.2 5.7 39 40-89 88-126 (370)
264 PLN02591 tryptophan synthase 30.1 75 0.0016 26.7 3.9 24 28-51 118-141 (250)
265 cd00537 MTHFR Methylenetetrahy 30.0 99 0.0021 25.7 4.6 37 40-80 127-164 (274)
266 COG1099 Predicted metal-depend 29.9 1.7E+02 0.0037 24.9 5.8 99 7-127 30-136 (254)
267 PF00728 Glyco_hydro_20: Glyco 29.8 52 0.0011 27.9 2.9 96 21-119 69-207 (351)
268 cd00560 PanC Pantoate-beta-ala 29.8 76 0.0017 27.2 3.9 49 31-80 38-90 (277)
269 COG5001 Predicted signal trans 29.7 65 0.0014 30.1 3.6 28 61-91 531-558 (663)
270 cd02685 MIT_C MIT_C; domain fo 29.7 1.1E+02 0.0023 24.1 4.4 29 22-50 65-93 (148)
271 PF13778 DUF4174: Domain of un 29.5 2.3E+02 0.0049 20.8 6.2 63 25-89 27-89 (118)
272 PTZ00372 endonuclease 4-like p 29.4 3.1E+02 0.0066 25.0 7.8 68 16-86 166-241 (413)
273 cd04724 Tryptophan_synthase_al 29.3 75 0.0016 26.2 3.7 25 28-52 116-140 (242)
274 PF06574 FAD_syn: FAD syntheta 29.3 40 0.00087 26.1 1.9 114 27-157 22-142 (157)
275 PRK00311 panB 3-methyl-2-oxobu 29.2 2.6E+02 0.0056 23.7 7.0 57 29-87 118-183 (264)
276 cd04747 OYE_like_5_FMN Old yel 29.1 1E+02 0.0022 27.3 4.6 64 20-83 70-164 (361)
277 TIGR03234 OH-pyruv-isom hydrox 29.1 2.5E+02 0.0054 22.5 6.7 54 27-82 83-141 (254)
278 cd06291 PBP1_Qymf_like Ligand 29.0 2.8E+02 0.0061 21.6 9.9 27 62-88 97-123 (265)
279 cd03309 CmuC_like CmuC_like. P 28.7 3.5E+02 0.0075 23.4 7.9 85 28-116 98-210 (321)
280 PTZ00124 adenosine deaminase; 28.6 2.1E+02 0.0046 25.2 6.6 26 119-144 270-295 (362)
281 PRK11061 fused phosphoenolpyru 28.4 96 0.0021 30.2 4.7 61 16-88 637-697 (748)
282 PLN02808 alpha-galactosidase 28.3 4.4E+02 0.0096 23.7 9.7 59 28-90 97-158 (386)
283 PRK00035 hemH ferrochelatase; 28.2 3.8E+02 0.0082 22.9 11.5 83 65-164 107-199 (333)
284 cd02969 PRX_like1 Peroxiredoxi 28.2 1.8E+02 0.004 21.9 5.5 28 24-52 41-68 (171)
285 COG1312 UxuA D-mannonate dehyd 28.1 1.2E+02 0.0026 27.2 4.9 41 29-71 193-241 (362)
286 cd06275 PBP1_PurR Ligand-bindi 28.1 2.2E+02 0.0048 22.2 6.2 19 70-88 110-128 (269)
287 PRK13209 L-xylulose 5-phosphat 28.1 2.7E+02 0.0058 22.7 6.8 18 28-45 99-116 (283)
288 cd01542 PBP1_TreR_like Ligand- 28.0 2.9E+02 0.0062 21.4 8.9 116 35-160 72-208 (259)
289 PRK10812 putative DNAse; Provi 28.0 2.6E+02 0.0057 23.3 6.8 23 28-50 45-68 (265)
290 TIGR02103 pullul_strch alpha-1 27.9 72 0.0016 31.9 3.8 30 20-49 396-425 (898)
291 TIGR03581 EF_0839 conserved hy 27.6 1.7E+02 0.0036 24.7 5.4 60 26-95 162-226 (236)
292 cd04733 OYE_like_2_FMN Old yel 27.5 1.1E+02 0.0024 26.3 4.6 64 20-83 74-169 (338)
293 cd01821 Rhamnogalacturan_acety 27.5 1.8E+02 0.0039 22.2 5.4 27 24-51 90-116 (198)
294 PRK10933 trehalose-6-phosphate 27.5 90 0.002 29.1 4.2 40 44-83 12-53 (551)
295 TIGR02171 Fb_sc_TIGR02171 Fibr 27.4 2.5E+02 0.0054 28.3 7.3 60 25-86 805-873 (912)
296 COG0084 TatD Mg-dependent DNas 27.4 3.8E+02 0.0082 22.6 8.0 41 28-70 42-84 (256)
297 PTZ00170 D-ribulose-5-phosphat 27.3 1.4E+02 0.0031 24.3 5.0 39 30-73 103-143 (228)
298 cd01545 PBP1_SalR Ligand-bindi 27.3 3E+02 0.0065 21.4 9.4 55 31-88 70-129 (270)
299 PRK05409 hypothetical protein; 27.3 4E+02 0.0087 22.9 10.2 90 21-122 72-171 (281)
300 COG3669 Alpha-L-fucosidase [Ca 27.2 50 0.0011 30.2 2.4 32 18-49 91-122 (430)
301 TIGR02435 CobG precorrin-3B sy 27.2 2.3E+02 0.005 25.0 6.6 37 122-161 329-368 (390)
302 cd06293 PBP1_LacI_like_11 Liga 27.1 3.1E+02 0.0067 21.5 9.7 25 62-86 101-125 (269)
303 cd06811 PLPDE_III_yhfX_like Ty 27.1 2.3E+02 0.0051 24.9 6.6 60 27-87 129-201 (382)
304 cd06267 PBP1_LacI_sugar_bindin 26.6 2.9E+02 0.0063 21.1 9.8 55 34-88 71-127 (264)
305 PF13686 DrsE_2: DsrE/DsrF/Drs 26.6 65 0.0014 24.9 2.7 20 28-47 91-110 (148)
306 KOG3424|consensus 26.4 1.2E+02 0.0026 23.3 3.9 34 41-79 21-54 (132)
307 PRK15000 peroxidase; Provision 26.3 1.4E+02 0.003 23.9 4.7 25 25-50 52-76 (200)
308 PLN02763 hydrolase, hydrolyzin 26.2 2.3E+02 0.0051 28.7 7.0 55 29-83 242-333 (978)
309 PLN00196 alpha-amylase; Provis 26.2 84 0.0018 28.5 3.7 24 27-50 91-114 (428)
310 COG1060 ThiH Thiamine biosynth 26.1 1E+02 0.0022 27.5 4.1 68 21-88 29-118 (370)
311 PRK03609 umuC DNA polymerase V 26.1 1.1E+02 0.0023 27.2 4.3 86 62-148 323-416 (422)
312 PRK13189 peroxiredoxin; Provis 25.9 3.3E+02 0.0073 22.0 6.9 54 24-85 52-105 (222)
313 TIGR03821 AblA_like_1 lysine-2 25.8 4.3E+02 0.0094 22.8 9.1 79 29-119 221-302 (321)
314 cd01335 Radical_SAM Radical SA 25.8 1.4E+02 0.0031 21.8 4.4 18 62-79 124-141 (204)
315 cd02877 GH18_hevamine_XipI_cla 25.8 4.1E+02 0.009 22.5 9.4 48 26-73 57-105 (280)
316 TIGR01697 PNPH-PUNA-XAPA inosi 25.7 3.8E+02 0.0082 22.0 9.5 82 30-114 143-243 (248)
317 cd04501 SGNH_hydrolase_like_4 25.6 2.9E+02 0.0062 20.6 6.8 51 24-74 79-135 (183)
318 PRK10382 alkyl hydroperoxide r 25.6 2.3E+02 0.005 22.4 5.8 52 24-85 48-99 (187)
319 TIGR00677 fadh2_euk methylenet 25.6 2.5E+02 0.0054 23.8 6.3 35 41-79 129-164 (281)
320 PF10061 DUF2299: Uncharacteri 25.5 1E+02 0.0023 23.6 3.6 42 11-53 57-98 (138)
321 PRK13191 putative peroxiredoxi 25.5 3.4E+02 0.0074 21.9 6.9 54 24-85 50-103 (215)
322 PRK08898 coproporphyrinogen II 25.5 1.9E+02 0.0041 25.5 5.8 36 42-88 109-144 (394)
323 COG4359 Uncharacterized conser 25.3 84 0.0018 26.1 3.2 25 29-54 77-101 (220)
324 TIGR02456 treS_nterm trehalose 25.3 99 0.0022 28.5 4.1 40 44-83 7-48 (539)
325 PRK14839 undecaprenyl pyrophos 25.2 2.9E+02 0.0063 23.3 6.5 50 27-79 39-99 (239)
326 KOG0392|consensus 25.2 58 0.0013 34.0 2.6 74 67-151 974-1076(1549)
327 COG3101 Uncharacterized protei 25.2 1.7E+02 0.0037 23.3 4.7 103 5-109 32-142 (180)
328 PRK13599 putative peroxiredoxi 25.1 3.7E+02 0.008 21.7 7.2 25 25-50 46-70 (215)
329 PRK03170 dihydrodipicolinate s 25.1 4E+02 0.0087 22.2 8.8 20 64-83 84-103 (292)
330 cd02933 OYE_like_FMN Old yello 25.0 1.3E+02 0.0028 26.2 4.5 64 21-84 70-173 (338)
331 PRK05912 tyrosyl-tRNA syntheta 24.9 5.1E+02 0.011 23.3 10.2 63 16-85 10-74 (408)
332 PRK10785 maltodextrin glucosid 24.7 78 0.0017 29.7 3.3 24 27-50 225-248 (598)
333 TIGR03854 F420_MSMEG_3544 prob 24.7 4.1E+02 0.0088 22.4 7.5 25 62-86 246-270 (290)
334 PRK15000 peroxidase; Provision 24.7 3.4E+02 0.0074 21.6 6.7 45 43-88 36-80 (200)
335 TIGR02402 trehalose_TreZ malto 24.5 80 0.0017 29.4 3.3 56 27-82 159-243 (542)
336 cd01301 rDP_like renal dipepti 24.4 1.9E+02 0.0041 24.9 5.4 48 66-113 116-166 (309)
337 cd06281 PBP1_LacI_like_5 Ligan 24.4 3.5E+02 0.0076 21.2 9.9 54 33-86 71-125 (269)
338 cd04734 OYE_like_3_FMN Old yel 24.3 1.3E+02 0.0028 26.1 4.5 65 20-84 69-162 (343)
339 cd01544 PBP1_GalR Ligand-bindi 24.2 3.6E+02 0.0078 21.3 10.8 54 34-87 67-122 (270)
340 COG0366 AmyA Glycosidases [Car 24.2 66 0.0014 28.3 2.6 46 3-48 50-97 (505)
341 PRK12999 pyruvate carboxylase; 24.2 6.3E+02 0.014 26.1 9.7 70 23-94 649-720 (1146)
342 cd02929 TMADH_HD_FMN Trimethyl 24.2 1.3E+02 0.0029 26.4 4.5 63 21-83 76-170 (370)
343 PF01408 GFO_IDH_MocA: Oxidore 24.2 95 0.0021 21.7 3.0 22 26-47 98-119 (120)
344 PRK06256 biotin synthase; Vali 24.0 2.8E+02 0.0062 23.5 6.4 71 4-83 166-236 (336)
345 COG1031 Uncharacterized Fe-S o 23.9 1.1E+02 0.0023 28.8 3.9 65 25-89 160-253 (560)
346 cd02871 GH18_chitinase_D-like 23.9 4.5E+02 0.0098 22.3 11.9 54 28-82 60-116 (312)
347 PRK14465 ribosomal RNA large s 23.9 1.7E+02 0.0038 25.7 5.2 60 7-72 220-283 (342)
348 COG0036 Rpe Pentose-5-phosphat 23.9 1.2E+02 0.0025 25.4 3.8 56 21-77 90-165 (220)
349 COG0685 MetF 5,10-methylenetet 23.8 1.2E+02 0.0026 25.9 4.1 51 30-80 132-183 (291)
350 TIGR01417 PTS_I_fam phosphoeno 23.8 2.2E+02 0.0047 26.8 6.0 59 18-89 472-531 (565)
351 cd02911 arch_FMN Archeal FMN-b 23.7 2.9E+02 0.0063 22.7 6.2 46 28-82 126-171 (233)
352 PF03447 NAD_binding_3: Homose 23.6 91 0.002 22.1 2.9 19 28-46 98-116 (117)
353 KOG0523|consensus 23.5 74 0.0016 30.5 2.9 48 21-68 451-498 (632)
354 cd02413 40S_S3_KH K homology R 23.4 1.6E+02 0.0034 20.4 3.9 45 44-89 35-79 (81)
355 cd01013 isochorismatase Isocho 23.2 1.5E+02 0.0032 23.6 4.2 28 24-51 53-80 (203)
356 PRK09856 fructoselysine 3-epim 23.2 4E+02 0.0088 21.5 11.7 56 28-84 47-111 (275)
357 TIGR02625 YiiL_rotase L-rhamno 23.1 74 0.0016 23.2 2.3 40 42-87 2-46 (102)
358 cd00550 ArsA_ATPase Oxyanion-t 23.1 4.2E+02 0.0092 21.7 8.2 68 61-129 173-240 (254)
359 PRK14841 undecaprenyl pyrophos 23.0 3E+02 0.0064 23.0 6.2 52 27-81 33-95 (233)
360 cd02932 OYE_YqiM_FMN Old yello 23.0 1.4E+02 0.003 25.7 4.3 29 21-49 70-98 (336)
361 PF00701 DHDPS: Dihydrodipicol 22.8 4.4E+02 0.0096 21.8 9.1 53 23-84 52-104 (289)
362 PF01026 TatD_DNase: TatD rela 22.8 1.6E+02 0.0034 24.1 4.5 24 28-51 39-64 (255)
363 PRK10605 N-ethylmaleimide redu 22.7 1.5E+02 0.0032 26.1 4.5 30 21-50 72-101 (362)
364 cd06842 PLPDE_III_Y4yA_like Ty 22.7 3.9E+02 0.0084 23.8 7.2 60 23-85 110-175 (423)
365 COG1419 FlhF Flagellar GTP-bin 22.6 1.9E+02 0.0042 26.3 5.2 53 19-81 292-344 (407)
366 PF06577 DUF1134: Protein of u 22.5 69 0.0015 25.5 2.1 63 97-164 14-78 (160)
367 TIGR03565 alk_sulf_monoox alka 22.5 1.7E+02 0.0036 25.3 4.8 26 61-86 305-330 (346)
368 PLN02411 12-oxophytodienoate r 22.3 1.5E+02 0.0033 26.3 4.6 29 21-49 80-108 (391)
369 PF05378 Hydant_A_N: Hydantoin 22.1 1.1E+02 0.0024 24.0 3.3 24 61-84 132-155 (176)
370 TIGR03180 UraD_2 OHCU decarbox 22.1 3E+02 0.0066 21.4 5.7 31 22-53 88-119 (158)
371 smart00642 Aamy Alpha-amylase 22.1 1E+02 0.0022 23.9 3.1 24 60-83 16-39 (166)
372 PRK06917 hypothetical protein; 22.1 4E+02 0.0086 23.9 7.3 43 29-74 381-436 (447)
373 TIGR01418 PEP_synth phosphoeno 22.0 2.5E+02 0.0055 27.5 6.3 58 19-88 713-771 (782)
374 COG0276 HemH Protoheme ferro-l 21.9 5E+02 0.011 22.8 7.6 66 67-149 106-171 (320)
375 COG1523 PulA Type II secretory 21.8 1.1E+02 0.0023 29.9 3.6 27 20-46 257-283 (697)
376 PRK13354 tyrosyl-tRNA syntheta 21.8 2.3E+02 0.0049 25.6 5.6 67 15-87 8-76 (410)
377 PRK05638 threonine synthase; V 21.8 4.6E+02 0.0099 23.5 7.6 86 32-131 126-223 (442)
378 PRK10128 2-keto-3-deoxy-L-rham 21.6 3.6E+02 0.0079 22.8 6.5 45 25-84 194-238 (267)
379 PLN02520 bifunctional 3-dehydr 21.6 1.9E+02 0.0042 26.8 5.2 47 29-80 123-169 (529)
380 TIGR01370 cysRS possible cyste 21.5 4.1E+02 0.0089 23.2 6.9 61 24-84 187-272 (315)
381 TIGR02109 PQQ_syn_pqqE coenzym 21.4 3.6E+02 0.0078 23.0 6.6 24 67-90 96-119 (358)
382 PRK03892 ribonuclease P protei 21.4 1.2E+02 0.0027 25.3 3.5 40 32-74 121-160 (216)
383 PRK09057 coproporphyrinogen II 21.3 2.2E+02 0.0048 24.9 5.3 55 23-88 70-126 (380)
384 PRK15447 putative protease; Pr 21.3 3E+02 0.0065 23.4 6.0 52 27-88 47-98 (301)
385 PRK05904 coproporphyrinogen II 21.2 2.6E+02 0.0056 24.4 5.7 55 23-88 71-125 (353)
386 PRK11177 phosphoenolpyruvate-p 21.2 1.9E+02 0.0041 27.4 5.1 59 18-88 473-531 (575)
387 PRK14510 putative bifunctional 21.2 4.3E+02 0.0094 27.4 8.0 25 26-50 245-269 (1221)
388 PRK14830 undecaprenyl pyrophos 21.2 3.6E+02 0.0079 22.7 6.4 52 27-81 52-114 (251)
389 cd01278 aprataxin_related apra 21.2 1.6E+02 0.0036 20.3 3.8 25 14-39 46-70 (104)
390 PTZ00377 alanine aminotransfer 21.1 3.1E+02 0.0066 24.6 6.3 56 28-90 203-262 (481)
391 TIGR03620 F420_MSMEG_4141 prob 21.1 2E+02 0.0044 24.3 4.9 26 63-88 237-262 (278)
392 KOG2368|consensus 21.0 2.9E+02 0.0063 23.8 5.7 64 24-88 130-193 (316)
393 PF02344 Myc-LZ: Myc leucine z 21.0 83 0.0018 18.5 1.7 14 62-75 17-30 (32)
394 PF02784 Orn_Arg_deC_N: Pyrido 20.9 4.1E+02 0.009 21.4 6.6 88 23-120 94-195 (251)
395 PRK07709 fructose-bisphosphate 20.8 4E+02 0.0086 22.9 6.6 58 27-86 28-86 (285)
396 PF00724 Oxidored_FMN: NADH:fl 20.8 1.8E+02 0.0039 25.2 4.6 64 21-84 73-170 (341)
397 PRK09505 malS alpha-amylase; R 20.8 1.3E+02 0.0027 29.2 3.9 24 27-50 291-314 (683)
398 PRK00124 hypothetical protein; 20.7 3.6E+02 0.0079 21.1 5.9 59 33-100 78-137 (151)
399 PRK09250 fructose-bisphosphate 20.6 4.7E+02 0.01 23.3 7.2 61 24-84 175-238 (348)
400 COG2200 Rtn c-di-GMP phosphodi 20.6 3.3E+02 0.0071 22.4 6.0 59 25-91 103-161 (256)
401 PRK00979 tetrahydromethanopter 20.5 3.7E+02 0.0079 23.6 6.4 49 34-88 139-198 (308)
402 COG1944 Uncharacterized conser 20.5 1.2E+02 0.0025 27.6 3.4 56 19-74 12-86 (398)
403 TIGR01210 conserved hypothetic 20.5 5.4E+02 0.012 22.0 7.5 56 29-86 156-211 (313)
404 TIGR02403 trehalose_treC alpha 20.5 1.3E+02 0.0028 27.9 3.8 40 44-83 6-47 (543)
405 PRK12313 glycogen branching en 20.5 1.3E+02 0.0028 28.4 3.9 24 27-50 219-242 (633)
406 cd06827 PLPDE_III_AR_proteobac 20.4 5.7E+02 0.012 22.2 7.8 72 29-102 102-178 (354)
407 PHA02546 47 endonuclease subun 20.3 5.6E+02 0.012 22.0 8.2 59 24-84 22-84 (340)
408 PRK07505 hypothetical protein; 20.3 3.3E+02 0.0072 23.5 6.2 47 31-77 345-401 (402)
409 TIGR00539 hemN_rel putative ox 20.3 4.1E+02 0.0089 22.9 6.8 51 28-83 136-187 (360)
410 cd01847 Triacylglycerol_lipase 20.2 1.6E+02 0.0034 24.3 4.0 22 62-83 140-161 (281)
411 cd06841 PLPDE_III_MccE_like Ty 20.2 5E+02 0.011 22.4 7.3 66 23-89 107-178 (379)
412 PRK14582 pgaB outer membrane N 20.2 2.9E+02 0.0062 26.8 6.1 57 26-84 297-355 (671)
413 smart00392 PROF Profilin. Bind 20.1 1.2E+02 0.0025 22.5 2.9 27 45-71 29-55 (129)
414 TIGR03842 F420_CPS_4043 F420-d 20.0 2.2E+02 0.0047 24.3 4.9 23 63-85 289-311 (330)
No 1
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=100.00 E-value=3.5e-64 Score=430.48 Aligned_cols=160 Identities=49% Similarity=0.887 Sum_probs=131.7
Q ss_pred CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F 80 (166)
||+||||||||||||.+|||+||++|+++|++|+++|+++||+|+||||||++++||+++|+++|++||+||+++|||+|
T Consensus 29 mN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~F 108 (306)
T PF07555_consen 29 MNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSF 108 (306)
T ss_dssp --EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EE
T ss_pred CceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC-----CCceEccccccccccCCCCCChhHHHHHhhccCCCc
Q psy629 81 ALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ-----PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEI 155 (166)
Q Consensus 81 ailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~-----~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i 155 (166)
|||||||++.++.+|.+.|.+.|++|++|+|+|.+++.. .+|+||||+||++++++ .||++|+++||++|
T Consensus 109 ailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~-----~Yl~~l~~~L~~~i 183 (306)
T PF07555_consen 109 AILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASP-----EYLRTLGEQLDPDI 183 (306)
T ss_dssp EEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCC-----HHHHHHHHHS-TTS
T ss_pred EEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCCh-----HHHHHHHhhCCCCC
Confidence 999999999988888999999999999999999999864 35999999999998755 79999999999999
Q ss_pred eEEeeCCCCC
Q psy629 156 DIMWTGPKVP 165 (166)
Q Consensus 156 ~i~WTG~~V~ 165 (166)
.|||||++|+
T Consensus 184 ~i~WTG~~V~ 193 (306)
T PF07555_consen 184 QIFWTGPKVC 193 (306)
T ss_dssp EEEE-CSSSS
T ss_pred EEEEcCCcee
Confidence 9999999998
No 2
>KOG3698|consensus
Probab=100.00 E-value=2.8e-58 Score=414.29 Aligned_cols=165 Identities=68% Similarity=1.174 Sum_probs=163.8
Q ss_pred CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F 80 (166)
||+|+||||||-+||.-|||+|+-||+..|+.||++|++++|+|+||||||+||.|||++++.+|++||+|+...||++|
T Consensus 47 l~tYlYAPKDDyKHR~~WRElY~vEEa~~L~~Li~aAke~~i~F~YAiSPGlDitySspkE~~TLKrKLDQV~qfGC~sf 126 (891)
T KOG3698|consen 47 LTTYLYAPKDDYKHRSLWRELYNVEEATYLRNLIEAAKENNINFVYAISPGLDITYSSPKEMDTLKRKLDQVRQFGCDSF 126 (891)
T ss_pred cceeeecccchhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCceEEEEcCCCcccccCCHHHHHHHHHHHHHHHhhCchhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEee
Q psy629 81 ALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWT 160 (166)
Q Consensus 81 ailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WT 160 (166)
|||||||+..++++|+|.|.++|+||+.++|+|+++||.|.|+||||+||.+++.|++..+.||+++|++|.++|+|+||
T Consensus 127 AlLFDDIe~~m~~aDkevF~sFAhAqVsitNeIy~yLg~p~FlFCPTeYC~sravPtv~~S~YLnTiGekL~~~I~ilWT 206 (891)
T KOG3698|consen 127 ALLFDDIEVQMQDADKEVFTSFAHAQVSITNEIYKYLGTPTFLFCPTEYCESRAVPTVESSQYLNTIGEKLAGDIHILWT 206 (891)
T ss_pred hhhhhhHHHHHhHhHHHHHHHhhhheeeehHHHHHHcCCCeEEecchHHhcccccCccccchHHHHHHHHhcCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy629 161 GPKVP 165 (166)
Q Consensus 161 G~~V~ 165 (166)
|++|+
T Consensus 207 GpkVi 211 (891)
T KOG3698|consen 207 GPKVI 211 (891)
T ss_pred CCcee
Confidence 99996
No 3
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.21 E-value=0.3 Score=43.13 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=64.2
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|=.|...+.+.+-. +++-+++++++++.|++.|..+...|+--..-.|++..+.+.+.+..+++.++|++.+. +
T Consensus 140 i~~s~Sd~h~~~n~~~t-~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~--l 216 (347)
T PLN02746 140 VFASASESFSKSNINCS-IEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEIS--L 216 (347)
T ss_pred EEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEE--e
Confidence 34466666666777655 67778999999999999999998888763333334445678999999999999999876 5
Q ss_pred CCCCCCCCHH
Q psy629 85 DDIESEMSEA 94 (166)
Q Consensus 85 DDi~~~~~~~ 94 (166)
=|.-|-..+.
T Consensus 217 ~DT~G~a~P~ 226 (347)
T PLN02746 217 GDTIGVGTPG 226 (347)
T ss_pred cCCcCCcCHH
Confidence 5655555443
No 4
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.14 E-value=0.72 Score=39.41 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=58.5
Q ss_pred eccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 6 YAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 6 YAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
+.|=.|...+.+.+-. .++-++++++.++.|++.|+....+|+--..-.++...+.+.+.+..+++.++|++.+. +=
T Consensus 99 ~~~~s~~~~~~n~~~~-~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~--l~ 175 (287)
T PRK05692 99 FASASEAFSQKNINCS-IAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEIS--LG 175 (287)
T ss_pred EEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEE--ec
Confidence 4455555555555544 55668899999999999999888777642211122223467888899999999999766 55
Q ss_pred CCCCCCCHH
Q psy629 86 DIESEMSEA 94 (166)
Q Consensus 86 Di~~~~~~~ 94 (166)
|.-+...+.
T Consensus 176 DT~G~~~P~ 184 (287)
T PRK05692 176 DTIGVGTPG 184 (287)
T ss_pred cccCccCHH
Confidence 666665544
No 5
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.09 E-value=0.94 Score=37.67 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=57.7
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.++.|..|...+.+++.. +++-+++++++++.|++.|..+.+++- + ++..+.+.+.+.++++.++|++.+.
T Consensus 87 ~i~~~~s~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~G~~v~~~~~---~---~~~~~~~~~~~~~~~~~~~G~~~i~-- 157 (259)
T cd07939 87 HISIPVSDIHLAHKLGKD-RAWVLDQLRRLVGRAKDRGLFVSVGAE---D---ASRADPDFLIEFAEVAQEAGADRLR-- 157 (259)
T ss_pred EEEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEeec---c---CCCCCHHHHHHHHHHHHHCCCCEEE--
Confidence 466788888777777733 455578999999999999987665441 1 1223457777888888889999876
Q ss_pred cCCCCCCCCHH
Q psy629 84 FDDIESEMSEA 94 (166)
Q Consensus 84 fDDi~~~~~~~ 94 (166)
+-|.-|.+.+.
T Consensus 158 l~DT~G~~~P~ 168 (259)
T cd07939 158 FADTVGILDPF 168 (259)
T ss_pred eCCCCCCCCHH
Confidence 55665555543
No 6
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=94.01 E-value=0.88 Score=38.54 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=62.1
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|=.|...+.+.+.. .++.++...+.++.+++.|.....+|+--.+-.+.+..+.+.+++..+++.++|++.+. +
T Consensus 92 i~~~~Sd~~~~~~~~~s-~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~--l 168 (274)
T cd07938 92 VFVSASETFSQKNINCS-IAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEIS--L 168 (274)
T ss_pred EEEecCHHHHHHHcCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEE--E
Confidence 44555666556666654 47888999999999999999988777642222233233568888889999999999876 5
Q ss_pred CCCCCCCCHH
Q psy629 85 DDIESEMSEA 94 (166)
Q Consensus 85 DDi~~~~~~~ 94 (166)
-|.-+...+.
T Consensus 169 ~DT~G~~~P~ 178 (274)
T cd07938 169 GDTIGVATPA 178 (274)
T ss_pred CCCCCccCHH
Confidence 6766666554
No 7
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=93.77 E-value=0.83 Score=38.49 Aligned_cols=83 Identities=10% Similarity=0.051 Sum_probs=54.7
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|..|...+.++... +++-++.++++++.+++.|....+. + ..+.-+...+.+.+.+.++++.++|++.+. +
T Consensus 97 i~~~~sd~~~~~~~~~~-~~~~~~~~~~~i~~ak~~G~~v~~~--~-~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~--l 170 (273)
T cd07941 97 IFGKSWDLHVTEALGTT-LEENLAMIRDSVAYLKSHGREVIFD--A-EHFFDGYKANPEYALATLKAAAEAGADWLV--L 170 (273)
T ss_pred EEEcCCHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCCeEEEe--E-EeccccCCCCHHHHHHHHHHHHhCCCCEEE--E
Confidence 45566665556667644 5677899999999999999876663 1 111001123467778888888899999876 4
Q ss_pred CCCCCCCCH
Q psy629 85 DDIESEMSE 93 (166)
Q Consensus 85 DDi~~~~~~ 93 (166)
-|.-|...+
T Consensus 171 ~DT~G~~~P 179 (273)
T cd07941 171 CDTNGGTLP 179 (273)
T ss_pred ecCCCCCCH
Confidence 454444443
No 8
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=93.47 E-value=0.41 Score=41.75 Aligned_cols=63 Identities=25% Similarity=0.459 Sum_probs=53.4
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~ 79 (166)
.|-|.||+-.| .++.+.|++|-++|+++|-+|-.-|=|..+..-+ =+.+.+-++.+|++||.=
T Consensus 148 fyHPdD~~~lr--------~~Qe~~l~~l~~ac~~sg~ElLLEvI~p~~~~~~----~~~~~~ai~r~Y~lGI~P 210 (311)
T PF09863_consen 148 FYHPDDDPELR--------LEQEAQLRRLYDACRRSGHELLLEVIPPKDMPVD----DDTYARAIERFYNLGIKP 210 (311)
T ss_pred ecCCCCCHHHH--------HHHHHHHHHHHHHHHhcCcceeEEEecCCCCCCC----hHHHHHHHHHHHHcCCCC
Confidence 58899998886 4688999999999999999999999998876543 267888889999999963
No 9
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.96 E-value=1.3 Score=37.60 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=43.0
Q ss_pred HCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629 39 EQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS 92 (166)
Q Consensus 39 ~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~ 92 (166)
..+|.....|.| |-||+||. +|++.+++=++.+.++|++-|.+-+=+=++...
T Consensus 49 ~~~ipv~vMIRPR~gdF~Ys~-~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD 102 (248)
T PRK11572 49 RVTIPVHPIIRPRGGDFCYSD-GEFAAMLEDIATVRELGFPGLVTGVLDVDGHVD 102 (248)
T ss_pred hcCCCeEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcC
Confidence 358999999999 88999985 789999999999999999997665544444433
No 10
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=92.49 E-value=1.6 Score=36.52 Aligned_cols=96 Identities=13% Similarity=0.183 Sum_probs=62.9
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|-.|...+.+++-. +++.++.+++.++.+++.|....++.-- ++..+.+.+.+-++++.++|++.++ +
T Consensus 92 i~~~~s~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~G~~v~~~~~~------~~~~~~~~~~~~~~~~~~~G~~~i~--l 162 (268)
T cd07940 92 TFIATSDIHLKYKLKKT-REEVLERAVEAVEYAKSHGLDVEFSAED------ATRTDLDFLIEVVEAAIEAGATTIN--I 162 (268)
T ss_pred EEecCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCeEEEeeec------CCCCCHHHHHHHHHHHHHcCCCEEE--E
Confidence 45566677666766633 4456899999999999999887754321 1122456677777788889999876 5
Q ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC
Q psy629 85 DDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119 (166)
Q Consensus 85 DDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~ 119 (166)
-|.-|.+.+.+. ..+++.+.+.++.
T Consensus 163 ~DT~G~~~P~~v----------~~lv~~l~~~~~~ 187 (268)
T cd07940 163 PDTVGYLTPEEF----------GELIKKLKENVPN 187 (268)
T ss_pred CCCCCCCCHHHH----------HHHHHHHHHhCCC
Confidence 666666654432 2345555555543
No 11
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=92.31 E-value=2.6 Score=35.84 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=56.8
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|=.|...+.+.+.. +++-+++++++++.|++.|..+.++++= ..-.| ..+.+.+.+-++.+.++|++.+. +
T Consensus 93 i~~~~S~~h~~~~~~~t-~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~~~~~~G~~~i~--l 166 (280)
T cd07945 93 LLTKGSLKHCTEQLRKT-PEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVDFLSDLPIKRIM--L 166 (280)
T ss_pred EEEeCCHHHHHHHHCcC-HHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHHHHHHcCCCEEE--e
Confidence 34455555556666644 6777899999999999999999888872 11011 12346777778888899999876 4
Q ss_pred CCCCCCCCH
Q psy629 85 DDIESEMSE 93 (166)
Q Consensus 85 DDi~~~~~~ 93 (166)
=|.-|...+
T Consensus 167 ~DT~G~~~P 175 (280)
T cd07945 167 PDTLGILSP 175 (280)
T ss_pred cCCCCCCCH
Confidence 455555443
No 12
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.48 E-value=1.9 Score=35.25 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=61.0
Q ss_pred HHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHH-------------
Q psy629 38 KEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFA------------- 103 (166)
Q Consensus 38 ~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a------------- 103 (166)
+..+|.....|.| |-|+.|| +++++.+++=+..+.++|++.|-+-+=+=++....+-.+.+-+.|
T Consensus 47 ~~~~ipv~vMIRpr~gdF~Ys-~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~ 125 (201)
T PF03932_consen 47 EAVDIPVHVMIRPRGGDFVYS-DEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDE 125 (201)
T ss_dssp HHTTSEEEEE--SSSS-S----HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGG
T ss_pred hhcCCceEEEECCCCCCccCC-HHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHH
Confidence 4899999999999 7799997 478999999999999999999766543333333321111111111
Q ss_pred -HHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEeeC
Q psy629 104 -HAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTG 161 (166)
Q Consensus 104 -~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WTG 161 (166)
.-|.+-+..+.+. |...++.= +.. .+-...-+-|+.|-+....+|.|+=-|
T Consensus 126 ~~d~~~al~~L~~l-G~~rVLTS-----Gg~-~~a~~g~~~L~~lv~~a~~~i~Im~Gg 177 (201)
T PF03932_consen 126 VPDPEEALEQLIEL-GFDRVLTS-----GGA-PTALEGIENLKELVEQAKGRIEIMPGG 177 (201)
T ss_dssp SSTHHHHHHHHHHH-T-SEEEES-----TTS-SSTTTCHHHHHHHHHHHTTSSEEEEES
T ss_pred hCCHHHHHHHHHhc-CCCEEECC-----CCC-CCHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 0011122222222 43332211 111 111235678888888878889877655
No 13
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.50 E-value=3.6 Score=36.37 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=59.7
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
-++.|-.|...+.+++-. .++-++.+.+.++.|++.|....++. .+ ++..+.+.+.+-++.+.++|++.+.|
T Consensus 93 ~i~~~~Sd~h~~~~~~~s-~~~~l~~~~~~v~~a~~~G~~v~~~~---ed---~~r~~~~~l~~~~~~~~~~Ga~~I~l- 164 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKT-REEVLERMVEAVEYAKDHGLYVSFSA---ED---ASRTDLDFLIEFAKAAEEAGADRVRF- 164 (378)
T ss_pred EEEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEe---cc---CCCCCHHHHHHHHHHHHhCCCCEEEE-
Confidence 367788888778888755 67778999999999999998877652 12 22235677888888888999998764
Q ss_pred cCCCCCCCCHH
Q psy629 84 FDDIESEMSEA 94 (166)
Q Consensus 84 fDDi~~~~~~~ 94 (166)
=|.-|.+.+.
T Consensus 165 -~DT~G~~~P~ 174 (378)
T PRK11858 165 -CDTVGILDPF 174 (378)
T ss_pred -eccCCCCCHH
Confidence 3555555444
No 14
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=90.08 E-value=7.5 Score=32.74 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=54.5
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|=.|...+.+++.. +++-++.++++++.|++.|+...+.+.= .+. +..+ .|.+=++++.++|++.+. +
T Consensus 90 i~~~~S~~~~~~~~~~~-~~e~~~~~~~~i~~a~~~G~~v~~~~ed--a~r-~~~~---~l~~~~~~~~~~g~~~i~--l 160 (262)
T cd07948 90 LVFGTSPFLREASHGKS-ITEIIESAVEVIEFVKSKGIEVRFSSED--SFR-SDLV---DLLRVYRAVDKLGVNRVG--I 160 (262)
T ss_pred EEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEe--eCC-CCHH---HHHHHHHHHHHcCCCEEE--E
Confidence 45566666666667644 3445899999999999999887777742 111 2233 455556666788999765 6
Q ss_pred CCCCCCCCHH
Q psy629 85 DDIESEMSEA 94 (166)
Q Consensus 85 DDi~~~~~~~ 94 (166)
-|.-|.+.+.
T Consensus 161 ~Dt~G~~~P~ 170 (262)
T cd07948 161 ADTVGIATPR 170 (262)
T ss_pred CCcCCCCCHH
Confidence 6777776654
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=88.98 E-value=8.4 Score=32.66 Aligned_cols=108 Identities=17% Similarity=0.322 Sum_probs=67.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC-----------------------------------CCCCCHHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD-----------------------------------ITYSSGKEVAT 64 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~-----------------------------------~~~s~~~d~~~ 64 (166)
+.||. .++|++.-++.|++++.-++|+.. ++|++++..+-
T Consensus 63 ~~FPd-----~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 137 (308)
T cd06593 63 DRFPD-----PEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKW 137 (308)
T ss_pred ccCCC-----HHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHH
Confidence 46664 789999999999999999988632 34556677788
Q ss_pred HHHHHHHHHHcCCCeeEEecCC-CCCCC---CH-HHHHHHhhHHHHHHHHHHHHHHHc-CCC-CceEcccccccc
Q psy629 65 LKRKLEQVAQFGCRGFALLFDD-IESEM---SE-ADKEVFQSFAHAQVSVTNEVFEHL-GQP-KFMLCPTQYCST 132 (166)
Q Consensus 65 L~~K~~ql~~lGvr~FailfDD-i~~~~---~~-~d~~~f~~~a~aq~~l~n~v~~~l-~~~-~l~~cPt~Y~~~ 132 (166)
...+++.+.+.||+.|-+=+.+ ++.+. .. ...+.-...+..+++.+.+..+.. +.. ++++.-..|.++
T Consensus 138 ~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs 212 (308)
T cd06593 138 YKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS 212 (308)
T ss_pred HHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc
Confidence 8899999999999987652222 11100 00 001111234455666665555444 333 688887777543
No 16
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=88.85 E-value=13 Score=32.33 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC-------------------------------------------CCCCCHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD-------------------------------------------ITYSSGKEVATL 65 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~-------------------------------------------~~~s~~~d~~~L 65 (166)
..++|++.-++.|++.+.-+.|..+ ++|.+++..+=-
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww 165 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWW 165 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHH
Confidence 5788888888899999877777432 234445556667
Q ss_pred HHHHHHHH-HcCCCeeEEecCCCCC--C----CCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEcccccccc
Q psy629 66 KRKLEQVA-QFGCRGFALLFDDIES--E----MSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCST 132 (166)
Q Consensus 66 ~~K~~ql~-~lGvr~FailfDDi~~--~----~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~ 132 (166)
..+++++. ++||+.|-+=+-+... . ....-.+.-...+...++...+..+..+..+++++=+.|.+.
T Consensus 166 ~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs 239 (340)
T cd06597 166 MEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA 239 (340)
T ss_pred HHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc
Confidence 88888888 6999999864333210 0 000011111112334444455555555556788887777654
No 17
>PRK15452 putative protease; Provisional
Probab=88.83 E-value=3.4 Score=37.59 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
.++. ++|++.++.|++.|+++.+++.- +..+++++.+.+.++++.++||+.+- +-|++
T Consensus 42 ~f~~---edl~eav~~ah~~g~kvyvt~n~-----i~~e~el~~~~~~l~~l~~~gvDgvI--V~d~G 99 (443)
T PRK15452 42 EFNH---ENLALGINEAHALGKKFYVVVNI-----APHNAKLKTFIRDLEPVIAMKPDALI--MSDPG 99 (443)
T ss_pred CCCH---HHHHHHHHHHHHcCCEEEEEecC-----cCCHHHHHHHHHHHHHHHhCCCCEEE--EcCHH
Confidence 4554 46888999999999999998762 22367899999999999999999855 44443
No 18
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=88.47 E-value=5.6 Score=33.56 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=42.4
Q ss_pred HHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCe--eEEecCC
Q psy629 35 SAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRG--FALLFDD 86 (166)
Q Consensus 35 ~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~--FailfDD 86 (166)
++++..+|.+...|.| |-||+|++ .+++.+++-++...++|+.- ||.+-.|
T Consensus 45 ~a~~~~~ipv~~MIRPRgGdFvY~~-~E~~iM~~DI~~~~~lG~~GVV~G~lt~d 98 (241)
T COG3142 45 EAVELSKIPVYVMIRPRGGDFVYSD-DELEIMLEDIRLARELGVQGVVLGALTAD 98 (241)
T ss_pred HHHhhcCCceEEEEecCCCCcccCh-HHHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence 3444499999999999 99999986 67999999999999999998 5555444
No 19
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=87.04 E-value=6.3 Score=33.25 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=51.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+|--.|..+++.+.+.++.+++.|..+..+++=- +++..+.+.+.+.++++.++|++.+.| =|.-|.+.+.
T Consensus 108 iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~----~~~~~~~~~~~~~~~~~~~~Ga~~i~l--~DT~G~~~P~ 178 (275)
T cd07937 108 FRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYT----GSPVHTLEYYVKLAKELEDMGADSICI--KDMAGLLTPY 178 (275)
T ss_pred EEEeecCChHHHHHHHHHHHHHCCCeEEEEEEec----CCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCCCHH
Confidence 4555666678999999999999998887776421 112234577888888899999999774 4666665544
No 20
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=3 Score=36.77 Aligned_cols=119 Identities=25% Similarity=0.371 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHH-
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVF- 99 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f- 99 (166)
-++.++ |++.++.|++.|++|.+++..-+. +.+++.+.+=+++|.++||+.+- +-|..--.-- ++.+
T Consensus 45 nfs~~~---l~e~i~~ah~~gkk~~V~~N~~~~-----~~~~~~~~~~l~~l~e~GvDavi--v~Dpg~i~l~--~e~~p 112 (347)
T COG0826 45 NFSVED---LAEAVELAHSAGKKVYVAVNTLLH-----NDELETLERYLDRLVELGVDAVI--VADPGLIMLA--RERGP 112 (347)
T ss_pred cCCHHH---HHHHHHHHHHcCCeEEEEeccccc-----cchhhHHHHHHHHHHHcCCCEEE--EcCHHHHHHH--HHhCC
Confidence 455555 899999999999999999987443 24567789999999999999876 4443311000 0001
Q ss_pred --hhHHHHHHHHHHHH----HHHcCCCCceEccccccccccCCCCCChhHHHHHhhccC-CCceEEeeCC
Q psy629 100 --QSFAHAQVSVTNEV----FEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLA-KEIDIMWTGP 162 (166)
Q Consensus 100 --~~~a~aq~~l~n~v----~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~-~~i~i~WTG~ 162 (166)
.--+..|+.+.|.- ++.+| -.-++.|.+=+ ...+.++.++++ =+|.||-=|.
T Consensus 113 ~l~ih~S~q~~v~N~~~~~f~~~~G-~~rvVl~rEls----------~~ei~~i~~~~~~veiEvfVhGa 171 (347)
T COG0826 113 DLPIHVSTQANVTNAETAKFWKELG-AKRVVLPRELS----------LEEIKEIKEQTPDVEIEVFVHGA 171 (347)
T ss_pred CCcEEEeeeEecCCHHHHHHHHHcC-CEEEEeCccCC----------HHHHHHHHHhCCCceEEEEEecc
Confidence 00112344444432 34456 34455666643 456888888886 6777776653
No 21
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=85.96 E-value=11 Score=30.33 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=62.4
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.++.|..|...+.+++. =+++-++.+.+.++.+++.|....+++--. .. .+. +.+.+-.+++.++|++.+.
T Consensus 85 ~i~~~~s~~~~~~~~~~-~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~--~~-~~~---~~~~~~~~~~~~~g~~~i~-- 155 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNK-SREEALERIEEAVKYAKELGYEVAFGCEDA--SR-TDP---EELLELAEALAEAGADIIY-- 155 (237)
T ss_dssp EEEEETSHHHHHHHTCS-HHHHHHHHHHHHHHHHHHTTSEEEEEETTT--GG-SSH---HHHHHHHHHHHHHT-SEEE--
T ss_pred EecCcccHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCceEeCcccc--cc-ccH---HHHHHHHHHHHHcCCeEEE--
Confidence 46777777666666763 344567899999999999999985554221 11 233 4555556666777999986
Q ss_pred cCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCC
Q psy629 84 FDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPK 121 (166)
Q Consensus 84 fDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~ 121 (166)
+-|..+.+.+.+ -.++++.+.+.++..+
T Consensus 156 l~Dt~G~~~P~~----------v~~lv~~~~~~~~~~~ 183 (237)
T PF00682_consen 156 LADTVGIMTPED----------VAELVRALREALPDIP 183 (237)
T ss_dssp EEETTS-S-HHH----------HHHHHHHHHHHSTTSE
T ss_pred eeCccCCcCHHH----------HHHHHHHHHHhccCCe
Confidence 445555554432 2366777777777633
No 22
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=84.70 E-value=9 Score=31.88 Aligned_cols=96 Identities=13% Similarity=0.264 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH-HHcCCCeeEEecCCCCCCCCH----------HHH
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQV-AQFGCRGFALLFDDIESEMSE----------ADK 96 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql-~~lGvr~FailfDDi~~~~~~----------~d~ 96 (166)
-..+++++..++.|++++.-++|+. .+--..++.++ .+.||+.|-+=+.+-...... ...
T Consensus 66 pdp~~~i~~l~~~g~~~~~~~~P~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~ 136 (265)
T cd06589 66 PNPKSMIDELHDNGVKLVLWIDPYI---------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHE 136 (265)
T ss_pred CCHHHHHHHHHHCCCEEEEEeChhH---------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHH
Confidence 3568899999999999999999987 45566667665 899999998655553321100 011
Q ss_pred HHHhhHHHHHHHHHHHHHHHc--CCCCceEcccccccc
Q psy629 97 EVFQSFAHAQVSVTNEVFEHL--GQPKFMLCPTQYCST 132 (166)
Q Consensus 97 ~~f~~~a~aq~~l~n~v~~~l--~~~~l~~cPt~Y~~~ 132 (166)
+.=...+..+++.+.+..+.. +..+++++-+.|.+.
T Consensus 137 ~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs 174 (265)
T cd06589 137 EMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGS 174 (265)
T ss_pred HHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc
Confidence 100123444555554444433 334688887777553
No 23
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=84.67 E-value=4.6 Score=35.49 Aligned_cols=82 Identities=23% Similarity=0.205 Sum_probs=56.9
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.+|.|-.|...+.+++-. .++-++.+.+.++.|++.|..+.++ + .+. +..+.+.+.+-++.+.++|++.+.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s-~~e~l~~~~~~i~~ak~~g~~v~~~--~-ed~---~r~~~~~l~~~~~~~~~~Ga~~i~-- 160 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKD-RAWVLERLARLVSFARDRGLFVSVG--G-EDA---SRADPDFLVELAEVAAEAGADRFR-- 160 (365)
T ss_pred EEEEccCHHHHHHHhCcC-HHHHHHHHHHHHHHHHhCCCEEEEe--e-cCC---CCCCHHHHHHHHHHHHHcCcCEEE--
Confidence 467787777667777644 4555899999999999999876654 2 122 223467777888888899999865
Q ss_pred cCCCCCCCCHH
Q psy629 84 FDDIESEMSEA 94 (166)
Q Consensus 84 fDDi~~~~~~~ 94 (166)
+=|.-|.+.+.
T Consensus 161 l~DT~G~~~P~ 171 (365)
T TIGR02660 161 FADTVGILDPF 171 (365)
T ss_pred EcccCCCCCHH
Confidence 55555554433
No 24
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=84.39 E-value=18 Score=31.01 Aligned_cols=99 Identities=13% Similarity=0.205 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC-------------------------------------CCCCCHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD-------------------------------------ITYSSGKEVATLKRKLEQ 71 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~-------------------------------------~~~s~~~d~~~L~~K~~q 71 (166)
..++|++.-++.|++++.-++|+.. ++|++++..+--.++++.
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~ 144 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSE 144 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHH
Confidence 4678888888899999888888642 355667777778888888
Q ss_pred HH-HcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHc--CCCCceEcccccccc
Q psy629 72 VA-QFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL--GQPKFMLCPTQYCST 132 (166)
Q Consensus 72 l~-~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l--~~~~l~~cPt~Y~~~ 132 (166)
+. ++||+.|-+=+.+-..- .+ .-...+..+++.+.+..+.. +..+++++-..|.+.
T Consensus 145 ~~~~~gvdg~w~D~~Ep~~~---~~--~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~ 203 (317)
T cd06600 145 WLNSQGVDGIWLDMNEPSDF---EK--VHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGS 203 (317)
T ss_pred HhhcCCCceEEeeCCCCccH---HH--hcchhhHHHHHHHHHHHHHhcCCCCceEEEecccccc
Confidence 87 89999988544432110 11 00112333343333333322 234688888887664
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=83.57 E-value=22 Score=28.80 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=54.4
Q ss_pred eccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 6 YAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 6 YAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
+.+..|.+...+++. =.++.++.+.+.++.+++.|+.+.+.+..-..- ..+ .+.+.+-++.+.++|++.+. +-
T Consensus 94 ~~~~s~~~~~~~~~~-~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~---~~~l~~~~~~~~~~g~~~i~--l~ 166 (265)
T cd03174 94 FDSASETHSRKNLNK-SREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTD---PEYVLEVAKALEEAGADEIS--LK 166 (265)
T ss_pred EEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCC---HHHHHHHHHHHHHcCCCEEE--ec
Confidence 344445444444332 245578899999999999999999998763220 112 35566677777899999888 44
Q ss_pred CCCCCCCHHH
Q psy629 86 DIESEMSEAD 95 (166)
Q Consensus 86 Di~~~~~~~d 95 (166)
|.-+.+.+++
T Consensus 167 Dt~G~~~P~~ 176 (265)
T cd03174 167 DTVGLATPEE 176 (265)
T ss_pred hhcCCcCHHH
Confidence 6555555543
No 26
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=82.93 E-value=16 Score=30.28 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCC-CCCCC---CHHHHHHHHHHHHHHHHcCCCe----eEEec-CCCCCCCCH
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGL-DITYS---SGKEVATLKRKLEQVAQFGCRG----FALLF-DDIESEMSE 93 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~-~~~~s---~~~d~~~L~~K~~ql~~lGvr~----Failf-DDi~~~~~~ 93 (166)
|...++.|+++++...+.||.|.+++-|-. +-... +-.+-..+++.|+.+.+-|=.. +.--. +.+++...+
T Consensus 11 P~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtHq~~~~~sg~~~e 90 (243)
T PF10096_consen 11 PFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHGYTHQYGNSVSGDGFE 90 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEecceecCCCcccccce
Confidence 446788999999999999999999999932 21110 1133467788888888877322 22222 222222110
Q ss_pred HHHHHH---hhHHHHHHHHHHH--HHHHcCCCCceEcccccccc
Q psy629 94 ADKEVF---QSFAHAQVSVTNE--VFEHLGQPKFMLCPTQYCST 132 (166)
Q Consensus 94 ~d~~~f---~~~a~aq~~l~n~--v~~~l~~~~l~~cPt~Y~~~ 132 (166)
-....+ .+...+..+|-+- +.+.+|-.+..|.|.-|..+
T Consensus 91 f~~~~~~~~~~~~~a~~ri~~gl~~l~~~gi~p~~f~aP~y~~s 134 (243)
T PF10096_consen 91 FWDSEFDAGDSEEEAKERIEKGLEILAELGIYPVGFEAPHYWAS 134 (243)
T ss_pred eccccccccCCHHHHHHHHHHHHHHHHHCCCcccEEECCccccC
Confidence 000000 1122333333333 34566778888888888765
No 27
>PRK00915 2-isopropylmalate synthase; Validated
Probab=82.70 E-value=19 Score=33.30 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=58.6
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+|.|-.|...+.+++.. .++-++.+.+.++.|++.|.++.|+.- |. +..+.+.+.+-++.+.++|++.+. +
T Consensus 98 i~~~~Sd~h~~~~l~~s-~~e~l~~~~~~v~~ak~~g~~v~f~~e---d~---~r~d~~~l~~~~~~~~~~Ga~~i~--l 168 (513)
T PRK00915 98 TFIATSPIHMEYKLKMS-REEVLEMAVEAVKYARSYTDDVEFSAE---DA---TRTDLDFLCRVVEAAIDAGATTIN--I 168 (513)
T ss_pred EEECCcHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEeC---CC---CCCCHHHHHHHHHHHHHcCCCEEE--E
Confidence 67777777667777765 566789999999999999998766543 22 123567788888889999999865 4
Q ss_pred CCCCCCCCH
Q psy629 85 DDIESEMSE 93 (166)
Q Consensus 85 DDi~~~~~~ 93 (166)
-|.-+.+.+
T Consensus 169 ~DTvG~~~P 177 (513)
T PRK00915 169 PDTVGYTTP 177 (513)
T ss_pred ccCCCCCCH
Confidence 555555443
No 28
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=80.82 E-value=5.6 Score=33.94 Aligned_cols=58 Identities=14% Similarity=0.343 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC------------------------------------CCCCCHHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD------------------------------------ITYSSGKEVATLKRKLEQV 72 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~------------------------------------~~~s~~~d~~~L~~K~~ql 72 (166)
..+++++.-++.|++++.-|.|+.. ++|++++..+-..++++++
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 150 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSL 150 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999532 2455677888888999999
Q ss_pred H-HcCCCeeEEecCC
Q psy629 73 A-QFGCRGFALLFDD 86 (166)
Q Consensus 73 ~-~lGvr~FailfDD 86 (166)
. ++||+.|-+=+.+
T Consensus 151 ~~~~Gvdg~w~D~~E 165 (303)
T cd06592 151 QEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHhCCcEEEeCCCC
Confidence 8 9999999876655
No 29
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=80.50 E-value=14 Score=32.55 Aligned_cols=82 Identities=12% Similarity=0.185 Sum_probs=57.7
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+|.|=.|...+.+++.. +++-++.+.+.++.|++.|..+.+++. +. +..+.+.+.+-++++.++|++.+. +
T Consensus 90 i~~~~Sd~~~~~~~~~~-~~~~~~~~~~~i~~ak~~G~~v~~~~e---da---~r~~~~~l~~~~~~~~~~g~~~i~--l 160 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKS-RDEVLEKAVEAVEYAKEHGLIVEFSAE---DA---TRTDIDFLIKVFKRAEEAGADRIN--I 160 (363)
T ss_pred EEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCEEEEEEe---ec---CCCCHHHHHHHHHHHHhCCCCEEE--E
Confidence 56676665556677743 566789999999999999988766653 21 123467788888889999999866 5
Q ss_pred CCCCCCCCHHH
Q psy629 85 DDIESEMSEAD 95 (166)
Q Consensus 85 DDi~~~~~~~d 95 (166)
-|.-+.+.+.+
T Consensus 161 ~DT~G~~~P~~ 171 (363)
T TIGR02090 161 ADTVGVLTPQK 171 (363)
T ss_pred eCCCCccCHHH
Confidence 56555555443
No 30
>PRK06233 hypothetical protein; Provisional
Probab=79.84 E-value=37 Score=30.00 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCCCC-CCCCH---------HHHHHHhhHHHHHHHHHHHHHHHcCCC---CceEccccc
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDDIE-SEMSE---------ADKEVFQSFAHAQVSVTNEVFEHLGQP---KFMLCPTQY 129 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDDi~-~~~~~---------~d~~~f~~~a~aq~~l~n~v~~~l~~~---~l~~cPt~Y 129 (166)
+++.+=++.|+++|||.+. +||-. ..++. +..+.+..++..-++++|++.+.++.. .+-+|...|
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQ--iDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~ 248 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQ--LDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNF 248 (372)
T ss_pred HHHHHHHHHHHHCCCCEEE--EcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCC
Confidence 3455667899999999854 88865 21111 012334455666667899998877643 257999999
Q ss_pred cccccCC
Q psy629 130 CSTRAVP 136 (166)
Q Consensus 130 ~~~~~~~ 136 (166)
.+.+..+
T Consensus 249 ~~~~~~~ 255 (372)
T PRK06233 249 KSTYLFS 255 (372)
T ss_pred CCccccc
Confidence 8766544
No 31
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=78.65 E-value=37 Score=29.10 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC----------------------------------CCCCCHHHHHHHHHHHHH-HH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD----------------------------------ITYSSGKEVATLKRKLEQ-VA 73 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~----------------------------------~~~s~~~d~~~L~~K~~q-l~ 73 (166)
..+++++..++.|++++..++|+.. ++|++++..+-...++.+ +.
T Consensus 67 dp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 146 (319)
T cd06591 67 DPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYY 146 (319)
T ss_pred CHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhh
Confidence 4678899999999999999888632 455666666666777764 77
Q ss_pred HcCCCeeEEecCCCCCCC--------------CHHHHHHHhhHHHHHHHHHHHHHHHcC--CCCceEcccccccc
Q psy629 74 QFGCRGFALLFDDIESEM--------------SEADKEVFQSFAHAQVSVTNEVFEHLG--QPKFMLCPTQYCST 132 (166)
Q Consensus 74 ~lGvr~FailfDDi~~~~--------------~~~d~~~f~~~a~aq~~l~n~v~~~l~--~~~l~~cPt~Y~~~ 132 (166)
+.||+.|-+=+-+-.... ...-.+. .+..+++.+-+..+..+ ..+++++-+.|.++
T Consensus 147 ~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~---y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gs 218 (319)
T cd06591 147 DKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNA---YPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGS 218 (319)
T ss_pred cCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhh---hHHHHHHHHHHHHHHhCCCCCceEEEecccccc
Confidence 899999976655522100 0011111 23334444433333343 35689998888664
No 32
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.97 E-value=44 Score=28.66 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=48.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC------------------------------------CCCCCHHHH
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD------------------------------------ITYSSGKEV 62 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~------------------------------------~~~s~~~d~ 62 (166)
++.||. .++|++.-++.|++++.-++|+.. ++|++++..
T Consensus 66 ~~~FPd-----p~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~ 140 (317)
T cd06598 66 RKAFPD-----PAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQ 140 (317)
T ss_pred cccCCC-----HHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHH
Confidence 456774 578888888899999998888631 256677777
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCC
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDD 86 (166)
+-..++++++.++||+.|-+-+-+
T Consensus 141 ~w~~~~~~~~~~~Gvdg~w~D~~E 164 (317)
T cd06598 141 AWFHDNYKKLIDQGVTGWWGDLGE 164 (317)
T ss_pred HHHHHHHHHhhhCCccEEEecCCC
Confidence 888899999999999998765554
No 33
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=77.51 E-value=13 Score=30.49 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQ 74 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~ 74 (166)
++.+++.++.|++.|++. +.+|||....-+.++.++.+.+-++.|.+
T Consensus 83 ~~~l~~~i~~A~~lGa~~-vv~h~g~~~~~~~e~~~~~~~~~l~~l~~ 129 (273)
T smart00518 83 IERLIDEIKRCEELGIKA-LVFHPGSYLKQSKEEALNRIIESLNEVID 129 (273)
T ss_pred HHHHHHHHHHHHHcCCCE-EEEccccccCCCHHHHHHHHHHHHHHHHh
Confidence 345666666666666663 33466543211223444555555555544
No 34
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=75.94 E-value=16 Score=30.28 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=38.2
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeE
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFA 81 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa 81 (166)
++-..|+++++.|+++++.|++.|+.+.+=--|. . ...++.+.++||..+.
T Consensus 175 ~~g~~~~~q~~~l~~~v~~a~~~Gl~vr~Wtv~~------~-------~~~~~~l~~~GVd~I~ 225 (228)
T cd08577 175 GKGDTPEDEKEKLKSIIDKAHARGKKVRFWGTPD------R-------PNVWKTLMELGVDLLN 225 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccCC------h-------HHHHHHHHHhCCCEEe
Confidence 4578999999999999999999999876654442 1 2335567778987643
No 35
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=75.40 E-value=38 Score=31.54 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+|.|=.|...+.+.+.. +++-++.+.+.++.|++.|.+..+. + .++...+..+.+.|.+-++.+.++|++.+.|.
T Consensus 100 i~~~~Sd~h~~~~l~~s-~ee~l~~~~~~v~~ak~~g~~V~~~--~-e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~- 174 (526)
T TIGR00977 100 IFGKSWDLHVLEALQTT-LEENLAMIYDTVAYLKRQGDEVIYD--A-EHFFDGYKANPEYALATLATAQQAGADWLVLC- 174 (526)
T ss_pred EEeCCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCeEEEE--e-eeeeecccCCHHHHHHHHHHHHhCCCCeEEEe-
Confidence 45555444444566644 5777889999999999999775532 2 22211222457888888899999999999876
Q ss_pred CCCCCCCCH
Q psy629 85 DDIESEMSE 93 (166)
Q Consensus 85 DDi~~~~~~ 93 (166)
|=++.-.+.
T Consensus 175 DTvG~~~P~ 183 (526)
T TIGR00977 175 DTNGGTLPH 183 (526)
T ss_pred cCCCCcCHH
Confidence 555555453
No 36
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.69 E-value=38 Score=28.11 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=48.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+|-..+..+...+++.++.+++.|....+.++=. .-.+. +.+.+.++++.++|+..+. +=|.-|.+.+.
T Consensus 102 iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~---~~~~~---~~~~~~~~~~~~~G~d~i~--l~DT~G~~~P~ 170 (263)
T cd07943 102 VRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS---HMASP---EELAEQAKLMESYGADCVY--VTDSAGAMLPD 170 (263)
T ss_pred EEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec---cCCCH---HHHHHHHHHHHHcCCCEEE--EcCCCCCcCHH
Confidence 5555667777899999999999999888877421 11123 5567777778899999886 45655555544
No 37
>PRK09389 (R)-citramalate synthase; Provisional
Probab=74.15 E-value=14 Score=33.99 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=58.3
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
-+|.|-.|...+.+++.. +++-++.+.+.++.|++.|..+.+.+. +.. ..+.+-+.+-++.+.++|++.+.
T Consensus 91 ~i~~~~Sd~h~~~~l~~s-~~e~l~~~~~~v~~ak~~g~~v~~~~e---d~~---r~~~~~l~~~~~~~~~~Ga~~i~-- 161 (488)
T PRK09389 91 HLVVPTSDLHIEYKLKKT-REEVLETAVEAVEYAKDHGLIVELSGE---DAS---RADLDFLKELYKAGIEAGADRIC-- 161 (488)
T ss_pred EEEEccCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEe---eCC---CCCHHHHHHHHHHHHhCCCCEEE--
Confidence 367788777666777754 677789999999999999988776543 322 23467788888888999999965
Q ss_pred cCCCCCCCCH
Q psy629 84 FDDIESEMSE 93 (166)
Q Consensus 84 fDDi~~~~~~ 93 (166)
+=|.-+.+.+
T Consensus 162 l~DTvG~~~P 171 (488)
T PRK09389 162 FCDTVGILTP 171 (488)
T ss_pred EecCCCCcCH
Confidence 4454444433
No 38
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.99 E-value=12 Score=28.56 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCC---CCCCCCCHHHHHHHHHHHHHHHHc----CCCeeEEecCCCCCCCCHHHHH
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPG---LDITYSSGKEVATLKRKLEQVAQF----GCRGFALLFDDIESEMSEADKE 97 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG---~~~~~s~~~d~~~L~~K~~ql~~l----Gvr~FailfDDi~~~~~~~d~~ 97 (166)
+-++.+++.++.|+..|++.+. ++|| .....+.++.++.+.+.|+.+.+. ||+ |.+=-........
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~---i~lE~~~~~~~~~--- 140 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIV-VHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR---IALENHPGPFSET--- 140 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEE-EECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE---EEEE-SSSSSSSE---
T ss_pred HHHHHHHHHHHHHHHhCCCcee-ecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce---EEEecccCccccc---
Confidence 3478999999999999999855 5555 444445567788888888777764 755 3333333322100
Q ss_pred HHhhHHHHHHHHHHHHHHHcCCCCceEcccccc
Q psy629 98 VFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYC 130 (166)
Q Consensus 98 ~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~ 130 (166)
. ..+.-+-++.+.++.+.+-+|+--+.
T Consensus 141 ----~--~~~~~~~~~l~~~~~~~~~i~~D~~h 167 (213)
T PF01261_consen 141 ----P--FSVEEIYRLLEEVDSPNVGICFDTGH 167 (213)
T ss_dssp ----E--SSHHHHHHHHHHHTTTTEEEEEEHHH
T ss_pred ----h--hhHHHHHHHHhhcCCCcceEEEehHH
Confidence 0 00112334556667766666654443
No 39
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=73.30 E-value=23 Score=31.53 Aligned_cols=124 Identities=11% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCC----CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHH-
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGL----DITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVF- 99 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~----~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f- 99 (166)
..++.+++|++.|+++|++..+-++|+. .+.+. +++-+.++|+.-.= +|- ..+.+.....
T Consensus 46 ~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~----------~l~~f~e~G~~glR--lD~---gfS~eei~~ms 110 (360)
T COG3589 46 LYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLD----------NLSRFQELGVDGLR--LDY---GFSGEEIAEMS 110 (360)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChH----------HHHHHHHhhhhhee--ecc---cCCHHHHHHHh
Confidence 4578999999999999999999999963 33322 45566666654322 221 1111110000
Q ss_pred hh-----H-HHHHHHHHHHHHHHcC-CCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEeeCCC
Q psy629 100 QS-----F-AHAQVSVTNEVFEHLG-QPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPK 163 (166)
Q Consensus 100 ~~-----~-a~aq~~l~n~v~~~l~-~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WTG~~ 163 (166)
.+ + +..-.+.+..+..... -..+..|--+|-.-...=+...-.-.+.+-+..+..+..|-+|++
T Consensus 111 ~~~lkieLN~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~~~ 181 (360)
T COG3589 111 KNPLKIELNASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISSDG 181 (360)
T ss_pred cCCeEEEEchhhhHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 00 0 0001113333333333 356888866664332111111222234445567778888877764
No 40
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=72.27 E-value=7.8 Score=33.86 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC-HHHHHHHhhHHHHHHHHHHHHHHHcC--CCCceEccc
Q psy629 58 SGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS-EADKEVFQSFAHAQVSVTNEVFEHLG--QPKFMLCPT 127 (166)
Q Consensus 58 ~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~-~~d~~~f~~~a~aq~~l~n~v~~~l~--~~~l~~cPt 127 (166)
+.+=.+.|.++++.+.+.|++- +++|.+++-.. .+....|...++.|+.++.+|.++.. .+++++||.
T Consensus 142 ~~~W~~il~~rl~~l~~kGfDG--vfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~N 212 (315)
T TIGR01370 142 DPEWKAIAFSYLDRVIAQGFDG--VYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQ 212 (315)
T ss_pred cHHHHHHHHHHHHHHHHcCCCe--EeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 4444567788999999999995 56898885321 11111233445678888888865443 355666643
No 41
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=71.50 E-value=7.1 Score=33.47 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCeEEEEecCCCCCCCCCHHH----HHHHHHHHHHHHHcCCCeeE---------------EecCCCCCCCC
Q psy629 32 GLISAAKEQGIDFYYALSPGLDITYSSGKE----VATLKRKLEQVAQFGCRGFA---------------LLFDDIESEMS 92 (166)
Q Consensus 32 ~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d----~~~L~~K~~ql~~lGvr~Fa---------------ilfDDi~~~~~ 92 (166)
.|++.+++..-..++++.|.-.. |...++ +..+.+|++.|.++||+.+- |+++.+...++
T Consensus 39 ~Li~~a~~~a~~vVvTf~~~P~q-f~~~~~~~~~~~t~e~~~~ll~~~GvD~v~~p~~~~myp~~f~~~i~~~~~~~vl~ 117 (281)
T PRK00380 39 SLVREARAEADIVVVSIFVNPLQ-FGPNEDLDRYPRTLEADLALLEAAGVDLVFAPSVEEMYPQGLQTYVSVPGLSDVLE 117 (281)
T ss_pred HHHHHHHHhCCEEEEeCCCCHHH-hCCCccccccCCCHHHHHHHHHHcCCCEEEeCCHHHCCCccceeEEEccccccccc
Confidence 45555555555667776552111 111122 34567888889999997752 33333444444
Q ss_pred HH----------------------HHHHHhhHHHHHHHHHHHHHHHcCCC-CceEccccc
Q psy629 93 EA----------------------DKEVFQSFAHAQVSVTNEVFEHLGQP-KFMLCPTQY 129 (166)
Q Consensus 93 ~~----------------------d~~~f~~~a~aq~~l~n~v~~~l~~~-~l~~cPt~Y 129 (166)
.+ |.-.|+.=...|..++.++.+.++-+ ..+.||+.=
T Consensus 118 G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~~l~~~v~ii~~p~vr 177 (281)
T PRK00380 118 GASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVADLNLPVEIVGVPTVR 177 (281)
T ss_pred CCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHHHcCCceEEEecCceE
Confidence 44 44445444455667777766666643 366677765
No 42
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=71.40 E-value=23 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 53 DITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 53 ~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
++++.+++-.+.|++-+....+.||+-|=+
T Consensus 167 dln~~np~vr~~l~~~~~~w~~~GvDGfRl 196 (539)
T TIGR02456 167 DLNYDNPAVHDAVHDVMRFWLDLGVDGFRL 196 (539)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 466667777788888888888999999884
No 43
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=69.87 E-value=41 Score=30.94 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=49.9
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+|-.-+..++++++..++.+++.|.....+|+= .++..-+.+.+.+..+++.++|++.++ +=|.-|.+.+.
T Consensus 112 irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~----t~~p~~t~e~~~~~a~~l~~~Gad~I~--i~Dt~G~l~P~ 182 (467)
T PRK14041 112 IRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY----TVSPVHTLEYYLEFARELVDMGVDSIC--IKDMAGLLTPK 182 (467)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe----ccCCCCCHHHHHHHHHHHHHcCCCEEE--ECCccCCcCHH
Confidence 444455556789999999999999877655531 111112357788888889999999866 67888777654
No 44
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=69.76 E-value=21 Score=29.38 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQF 75 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~l 75 (166)
++.++..++.|++.|++.+ .++||..-.-+.++.++.+.+.+.+|.+.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v-~~~~g~~~~~~~~~~~~~~~~~l~~l~~~ 131 (279)
T cd00019 84 IERLKDEIERCEELGIRLL-VFHPGSYLGQSKEEGLKRVIEALNELIDK 131 (279)
T ss_pred HHHHHHHHHHHHHcCCCEE-EECCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777753 45666432222344556666666666653
No 45
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=68.73 E-value=5.2 Score=35.46 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHcCCCeeE
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGL--DITYSSGKEVATLKRKLEQVAQFGCRGFA 81 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~--~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa 81 (166)
++.+++|++|++.|++.|++.+.=|||.. .+..+. .| ++.+.++|+..+=
T Consensus 43 ~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~-~d-------l~~~~~lGi~~lR 94 (357)
T PF05913_consen 43 EDYLERLKELLKLAKELGMEVIADISPKVLKKLGISY-DD-------LSFFKELGIDGLR 94 (357)
T ss_dssp --HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BT-TB-------THHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCH-HH-------HHHHHHcCCCEEE
Confidence 45689999999999999999999999942 122221 11 4456778887654
No 46
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=68.67 E-value=9 Score=32.82 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=49.9
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCe-----EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc---
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGID-----FYYALSPGLDITYSSGKEVATLKRKLEQVAQF--- 75 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~-----Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~l--- 75 (166)
-++.|=.|...+.+.+.. .++-++.++++++.|++.|.. |....++ .|.. ..+.+.|..=++.+.++
T Consensus 97 ~i~~~~Sd~h~~~~~~~s-~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~-EDas---r~~~~~l~~~~~~~~~~~~~ 171 (284)
T cd07942 97 HLYNATSPLQRRVVFGKS-KEEIIEIAVDGAKLVKELAAKYPETDWRFEYSP-ESFS---DTELDFALEVCEAVIDVWQP 171 (284)
T ss_pred EEEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhcccccCceEEEEECC-ccCC---CCCHHHHHHHHHHHHHhhcC
Confidence 357777776666777755 677789999999999999865 3333333 2221 12345555555555555
Q ss_pred CCC---eeEEecCCCCCCCC
Q psy629 76 GCR---GFALLFDDIESEMS 92 (166)
Q Consensus 76 Gvr---~FailfDDi~~~~~ 92 (166)
|+. .+. +-|=++.-.+
T Consensus 172 g~~~~~~i~-laDTvG~a~P 190 (284)
T cd07942 172 TPENKIILN-LPATVEVATP 190 (284)
T ss_pred CCCcceEEE-ccccccccCH
Confidence 655 554 2344554333
No 47
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.58 E-value=26 Score=28.60 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
.+.|+++++.|.+.||++++=-+|+.- ..+.++...|+ .+.+-..|++.+|
T Consensus 132 ~~~l~~l~~~a~~~gv~l~lE~~~~~~--~~~~~~~~~l~------~~v~~~~~~~~~D 182 (284)
T PRK13210 132 IEGLAWAVEQAAAAQVMLAVEIMDTPF--MNSISKWKKWD------KEIDSPWLTVYPD 182 (284)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCccc--cCCHHHHHHHH------HHcCCCceeEEec
Confidence 467899999999999988776665432 12333334332 3346677888876
No 48
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=68.51 E-value=61 Score=28.24 Aligned_cols=106 Identities=22% Similarity=0.340 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHCCC-eEEEEecCC-C-CCCCCC-HHHHHHHHHHHHHHHHcCCCeeEEe-cC-CCCCCCCHHHHHHHhh
Q psy629 28 EHLTGLISAAKEQGI-DFYYALSPG-L-DITYSS-GKEVATLKRKLEQVAQFGCRGFALL-FD-DIESEMSEADKEVFQS 101 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v-~Fv~aisPG-~-~~~~s~-~~d~~~L~~K~~ql~~lGvr~Fail-fD-Di~~~~~~~d~~~f~~ 101 (166)
+-|+.+.+.|++.++ ..|+...|- . -+.-+. ...+-.+..|+++|..+||+.+.+. || ++. .++
T Consensus 33 ~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F~~~fa-~ls--------- 102 (304)
T COG0196 33 KLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFDLEFA-NLS--------- 102 (304)
T ss_pred HHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEeCCHhHh-hCC---------
Confidence 678888899999888 777788662 2 122111 4567789999999999999998766 44 232 233
Q ss_pred HHHHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhc
Q psy629 102 FAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSK 150 (166)
Q Consensus 102 ~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~ 150 (166)
++.-+. .+.+++.++.++ |-..|+-- ....+....|+.+++.
T Consensus 103 ---~~~Fv~-~lv~~l~~k~iv-vG~DF~FG--k~~~g~~~~L~~~~~~ 144 (304)
T COG0196 103 ---AEEFVE-LLVEKLNVKHIV-VGFDFRFG--KGRQGNAELLRELGQK 144 (304)
T ss_pred ---HHHHHH-HHHhccCCcEEE-EecccccC--CCCCCCHHHHHHhccC
Confidence 233333 455666665443 44444421 1223456677887753
No 49
>PRK03906 mannonate dehydratase; Provisional
Probab=68.41 E-value=17 Score=32.61 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecC--------CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSP--------GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisP--------G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
..|++++..|++.||+. |||| |+.--.++.+++..|++- .+-..++|.||
T Consensus 214 ~fL~~v~p~Aee~GV~L--aihPdDPp~~~~Gl~riv~t~~d~~rll~~------v~Sp~~gl~lD 271 (385)
T PRK03906 214 YFLKAIIPVAEEVGVKM--AIHPDDPPRPIFGLPRIVSTEEDLQRLLDA------VDSPANGLTLC 271 (385)
T ss_pred HHHHHHHHHHHHcCCEE--EEeeCCccccccccCceeCCHHHHHHHHHh------cCCCceeEEEc
Confidence 67899999999999864 6677 333333556666665533 34566888887
No 50
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=68.40 E-value=21 Score=33.14 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=55.1
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
++.|-.|...+.+.+.. .++-++++.+.++.|++.|.. .+..++ .| .+..|.+.|.+-++.+.++|++.+. +
T Consensus 187 i~i~~Sd~h~~~kl~~s-~ee~l~~~~~~V~~Ak~~G~~-~v~f~~-ED---a~Rtd~efl~~~~~~a~~~Gad~I~--l 258 (503)
T PLN03228 187 AFTSTSDIHMKYKLKKT-KEEVIEMAVSSIRYAKSLGFH-DIQFGC-ED---GGRSDKEFLCKILGEAIKAGATSVG--I 258 (503)
T ss_pred EEecCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCc-eEEecc-cc---ccccCHHHHHHHHHHHHhcCCCEEE--E
Confidence 46666655546667653 566689999999999999975 123333 12 2234577888999999999999875 4
Q ss_pred CCCCCCCCHH
Q psy629 85 DDIESEMSEA 94 (166)
Q Consensus 85 DDi~~~~~~~ 94 (166)
=|.-|.+.+.
T Consensus 259 ~DTvG~~tP~ 268 (503)
T PLN03228 259 ADTVGINMPH 268 (503)
T ss_pred ecCCCCCCHH
Confidence 4555554443
No 51
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=68.31 E-value=15 Score=31.67 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------HHHHHHHHHHHHHHHHcCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDITYSS------GKEVATLKRKLEQVAQFGCR 78 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~------~~d~~~L~~K~~ql~~lGvr 78 (166)
++++++.+.++++|+ -+.+||+..++.+| +..++.|..-++-+..+|+.
T Consensus 91 ~~~~~~g~~~~~~~i--rls~Hp~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~ 145 (303)
T PRK02308 91 EELREIGEFIKEHNI--RLSFHPDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGID 145 (303)
T ss_pred HHHHHHHHHHHHcCC--CeeccChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 455555555666788 47789999988887 24588899999999999999
No 52
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.00 E-value=58 Score=27.33 Aligned_cols=69 Identities=25% Similarity=0.202 Sum_probs=48.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
.|-..+...++++.++++.+++.|....+++.= ... .+ .+.+.+.++++.++|++.|. +=|.-|.+.+.
T Consensus 99 iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~--a~~-~~---~~~~~~~~~~~~~~g~~~i~--l~DT~G~~~P~ 167 (266)
T cd07944 99 IRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMA--ISG-YS---DEELLELLELVNEIKPDVFY--IVDSFGSMYPE 167 (266)
T ss_pred EEEecccccHHHHHHHHHHHHHCCCeEEEEEEe--ecC-CC---HHHHHHHHHHHHhCCCCEEE--EecCCCCCCHH
Confidence 466677788999999999999999875554432 122 22 35566666777788999876 55666666554
No 53
>KOG3111|consensus
Probab=67.90 E-value=4.4 Score=33.55 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCC--------------------CCCCHHHHHHHHHHHHHHHHcCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDI--------------------TYSSGKEVATLKRKLEQVAQFGCR 78 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~--------------------~~s~~~d~~~L~~K~~ql~~lGvr 78 (166)
+...+|++..+++|+.++.||.||-.. -|..++=.+..+.|.+.|++-++.
T Consensus 99 q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~ 169 (224)
T KOG3111|consen 99 QKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPN 169 (224)
T ss_pred cCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCC
Confidence 457899999999999999999999642 133344567788888888865554
No 54
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=67.75 E-value=74 Score=26.79 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Q psy629 41 GIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120 (166)
Q Consensus 41 ~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~ 120 (166)
...|++-+.|... +-.+...+++. |...|++..++.+.-+..... ....+...+..|.+.+.++.+..+..
T Consensus 189 ~t~~vlV~~pe~~----si~e~~rl~~~---L~~~g~~~~~lvvN~v~~~~~--~~~~~~~r~~~q~~~L~~i~~~~~~~ 259 (284)
T TIGR00345 189 RTSFVLVVIPEKM----SLYESERAHKE---LAKYGIKVDAVIVNQVLPENA--QDEFCQARWELQQKYLKEIPEKFADL 259 (284)
T ss_pred ceEEEEEECCCCC----cHHHHHHHHHH---HHhCCCCCCEEEEeCCcCCCC--CCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5779999999432 22344555444 456788888888887664311 11235567789999999999999888
Q ss_pred CceEccccccccccCCCCCChhHHHHHhhcc
Q psy629 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKL 151 (166)
Q Consensus 121 ~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L 151 (166)
++..+|-.-.. +.+-+=|+.|++.|
T Consensus 260 ~~~~vp~~~~e------~~G~~~L~~l~~~~ 284 (284)
T TIGR00345 260 PVAEVPLQKEE------MVGLEALKRLSKTL 284 (284)
T ss_pred CeEEecCCCCC------CCCHHHHHHHHhhC
Confidence 88888765432 33455677776543
No 55
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=67.28 E-value=59 Score=30.36 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHH----CCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHH-H---------cCCCeeEEecCC
Q psy629 26 EAEHLTGLISAAKE----QGIDFYYALSPGLDITYSSGKEVATLKRKLEQVA-Q---------FGCRGFALLFDD 86 (166)
Q Consensus 26 ~l~~l~~L~~~a~~----~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~-~---------lGvr~FailfDD 86 (166)
..++|+++...|-+ ..+.++..||=|+|- .-+.+|.+|+..-. + -.++.|+|-|++
T Consensus 208 ~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDS-----SlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~ 277 (554)
T PRK09431 208 DKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS-----SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG 277 (554)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEcCCCccH-----HHHHHHHHHhhcccccccccccccCCCceEEEEeCCC
Confidence 45677777777643 478999999999982 34666666653210 0 147899999987
No 56
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.02 E-value=21 Score=29.38 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=29.2
Q ss_pred hhccCCCH--HHHHHHHHHHHHHHHCCCeEEEEecCCC
Q psy629 17 YWRDLYSV--EEAEHLTGLISAAKEQGIDFYYALSPGL 52 (166)
Q Consensus 17 ~Wre~Yp~--~~l~~l~~L~~~a~~~~v~Fv~aisPG~ 52 (166)
-|-+-+|. .-+++++.|-.-|+++||-.+|+.+||.
T Consensus 45 ~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaqp~~ 82 (218)
T COG1535 45 PWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQPGE 82 (218)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 35555542 3468999999999999999999999984
No 57
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=66.00 E-value=87 Score=27.18 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEe------------cCC------------------CCCCCCCHHHHHHHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYAL------------SPG------------------LDITYSSGKEVATLKRKLE 70 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai------------sPG------------------~~~~~s~~~d~~~L~~K~~ 70 (166)
-|+ .+++++|++.|++.||+.+=-| .|. ..++.++++-++-|.+-|+
T Consensus 71 ~YT---~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~ 147 (329)
T cd06568 71 YYT---QEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFR 147 (329)
T ss_pred cCC---HHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHH
Confidence 465 4567899999999999877433 121 1245556777888888888
Q ss_pred HHHHcCC-CeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHc
Q psy629 71 QVAQFGC-RGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117 (166)
Q Consensus 71 ql~~lGv-r~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l 117 (166)
.+.++=. +.|=|-.|.+..... ..+..++|++.+.+
T Consensus 148 E~~~~f~~~~iHiGgDE~~~~~~-----------~~~~~f~~~~~~~v 184 (329)
T cd06568 148 ELAALTPGPYIHIGGDEAHSTPH-----------DDYAYFVNRVRAIV 184 (329)
T ss_pred HHHHhCCCCeEEEecccCCCCch-----------HHHHHHHHHHHHHH
Confidence 8888643 446666777765322 24556666666544
No 58
>PRK10658 putative alpha-glucosidase; Provisional
Probab=65.39 E-value=23 Score=33.87 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC-----------------------------------CCCCCHHHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD-----------------------------------ITYSSGKEVATLKRKLEQVA 73 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~-----------------------------------~~~s~~~d~~~L~~K~~ql~ 73 (166)
..++|++.-++.|++.+.-|.|+.. ++|.+++..+=...+++.|.
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~ 405 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL 405 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH
Confidence 4567888888899999988988642 35566777788888999999
Q ss_pred HcCCCeeEE
Q psy629 74 QFGCRGFAL 82 (166)
Q Consensus 74 ~lGvr~Fai 82 (166)
++||+.|-.
T Consensus 406 d~Gvdgfw~ 414 (665)
T PRK10658 406 DMGVDCFKT 414 (665)
T ss_pred hcCCcEEEe
Confidence 999998874
No 59
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=65.38 E-value=21 Score=30.44 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=49.7
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-eeEEe
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCR-GFALL 83 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr-~Fail 83 (166)
++.|=.|...+.+.+-. .++-+++++++++.|++.|+...+++-=...-.++ +.-++-+.+=++.+.+.|++ .+. +
T Consensus 93 i~~s~S~~~~~~~~~~t-~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~-~~v~~~~~~~~~~~~~~G~~~~i~-l 169 (279)
T cd07947 93 ILMSVSDYHIFKKLKMT-REEAMEKYLEIVEEALDHGIKPRCHLEDITRADIY-GFVLPFVNKLMKLSKESGIPVKIR-L 169 (279)
T ss_pred EEEcCCHHHHHHHhCcC-HHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcc-cchHHHHHHHHHHHHHCCCCEEEE-e
Confidence 35566666667778754 67778999999999999999988887110001110 11122333334444559998 555 3
Q ss_pred cCCCCC
Q psy629 84 FDDIES 89 (166)
Q Consensus 84 fDDi~~ 89 (166)
-|=++.
T Consensus 170 ~DTvG~ 175 (279)
T cd07947 170 CDTLGY 175 (279)
T ss_pred ccCCCc
Confidence 455653
No 60
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=65.03 E-value=14 Score=32.91 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=41.8
Q ss_pred eeccCCChhhhhhhcc------------------CCCHHHHHHHHHHHHHHHHCCCeEEEEec--CCCCCCCC---CHHH
Q psy629 5 LYAPKDDYKHRAYWRD------------------LYSVEEAEHLTGLISAAKEQGIDFYYALS--PGLDITYS---SGKE 61 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre------------------~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais--PG~~~~~s---~~~d 61 (166)
+|+|++||-...+=|+ .||.+++.++| +..++.|++|..-=| |-.+|... .+++
T Consensus 7 w~g~~~dpv~l~~irQ~~Gv~giV~al~~~p~g~~W~~e~i~~~k---~~ie~~GL~~~vIEsvpv~e~IklG~~~RD~~ 83 (351)
T PF03786_consen 7 WFGPEDDPVTLWDIRQQPGVTGIVTALHDIPNGEVWDYEEIRALK---ERIEAAGLTLSVIESVPVHEDIKLGLPGRDEE 83 (351)
T ss_dssp ---TTT-SS-HHHHCTSTTEEEEEE--SSS-TTS---HHHHHHHH---HHHHCTT-EEEEEES----HHHHCT-TTHHHH
T ss_pred eeCCCCCcchHHHHHHhcCCCCeeeCCCCCCCCCCCCHHHHHHHH---HHHHHcCCeEEEEecCChHHHHhcCCCcHHHH
Confidence 4667666665554444 35555555555 455568988876333 22234443 2688
Q ss_pred HHHHHHHHHHHHHcCCCeeEEe
Q psy629 62 VATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~Fail 83 (166)
++..++=|+.|-++||+-++-.
T Consensus 84 Ieny~~~Irnlg~~GI~vvcYN 105 (351)
T PF03786_consen 84 IENYKQTIRNLGKAGIKVVCYN 105 (351)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999977654
No 61
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=64.98 E-value=29 Score=31.92 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=55.1
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+|.|=.|...+.+.+.. +++-++.+.+.++.|++.|..+.|+.- |. +..+.+.|++-++.+.++|++.+. +
T Consensus 95 i~~~~S~~h~~~~l~~s-~~e~l~~~~~~v~~a~~~g~~v~f~~E---d~---~r~d~~~l~~~~~~~~~~Ga~~i~--l 165 (494)
T TIGR00973 95 TFIATSPIHLEHKLKMT-RDEVLERAVGMVKYAKNFTDDVEFSCE---DA---GRTEIPFLARIVEAAINAGATTIN--I 165 (494)
T ss_pred EEEccCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCeEEEEcC---CC---CCCCHHHHHHHHHHHHHcCCCEEE--e
Confidence 56666555555666644 566688999999999999987665522 22 223567788888888999999876 5
Q ss_pred CCCCCCCCH
Q psy629 85 DDIESEMSE 93 (166)
Q Consensus 85 DDi~~~~~~ 93 (166)
-|.-+.+.+
T Consensus 166 ~DTvG~~~P 174 (494)
T TIGR00973 166 PDTVGYALP 174 (494)
T ss_pred CCCCCCCCH
Confidence 555555443
No 62
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=64.26 E-value=7.8 Score=29.58 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC--CCCC--CHHHHHHHHHHHHHHHH-cCCCe
Q psy629 22 YSVEEAEHLTGLISAAKEQGIDFYYALSPGLD--ITYS--SGKEVATLKRKLEQVAQ-FGCRG 79 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~--~~~s--~~~d~~~L~~K~~ql~~-lGvr~ 79 (166)
-...|.+.|+-|.+.|++.||+-.+-|-|-+. ..|. +.+.++...+|+..+.+ .|++-
T Consensus 30 ~~SpEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 30 TKSPEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp SS-THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--E
T ss_pred cCCccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 34668999999999999999999999999432 2222 46789999999986654 88843
No 63
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=64.03 E-value=49 Score=30.22 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=46.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+|-.-+-.+..++++.++.+++.|.....+|+.-.+ .+. +.+.+.+..+++.++|++.++ +=|.-|.+.+.
T Consensus 113 irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~---~~~~~~~~a~~l~~~Gad~I~--i~Dt~G~l~P~ 183 (448)
T PRK12331 113 IRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS-PVH---TIDYFVKLAKEMQEMGADSIC--IKDMAGILTPY 183 (448)
T ss_pred EEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC-CCC---CHHHHHHHHHHHHHcCCCEEE--EcCCCCCCCHH
Confidence 444444445567899999999999664444433111 122 346677777888999999877 55877777654
No 64
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.82 E-value=70 Score=25.12 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=31.5
Q ss_pred HHHHHHHCCCeEEEEecC--C-CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 33 LISAAKEQGIDFYYALSP--G-LDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 33 L~~~a~~~~v~Fv~aisP--G-~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
.++.+.+.|+.+|.-=.+ + ..+.+-.....+.-..-.+.|.+.|.+.++++.....
T Consensus 75 ~~~~~~~~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~ 133 (270)
T cd06294 75 IIDYLKEEKFPFVVIGKPEDDKENITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGDLD 133 (270)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCCCeEEECcHHHHHHHHHHHHHcCCccEEEecCCcc
Confidence 345556677776665443 2 1122111122344444567777889999999975543
No 65
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.50 E-value=30 Score=29.64 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC------------------------------------CCCCCHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD------------------------------------ITYSSGKEVA 63 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~------------------------------------~~~s~~~d~~ 63 (166)
+.|| ..++|++.-++.|++.+.-|+|+.. ++|++++..+
T Consensus 70 ~~FP-----dp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ 144 (317)
T cd06599 70 DRFP-----DPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGRE 144 (317)
T ss_pred ccCC-----CHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHH
Confidence 5666 4678888889999999998888631 3455667777
Q ss_pred HHHHHH-HHHHHcCCCeeEEecCC
Q psy629 64 TLKRKL-EQVAQFGCRGFALLFDD 86 (166)
Q Consensus 64 ~L~~K~-~ql~~lGvr~FailfDD 86 (166)
-..+++ +.+.++||+-|=+=+.+
T Consensus 145 ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 145 WWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCC
Confidence 788888 78899999998755444
No 66
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=63.18 E-value=45 Score=27.18 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCC-CCCCCCHHHHHHHHHHHHHHH----HcCCCeeEE
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGL-DITYSSGKEVATLKRKLEQVA----QFGCRGFAL 82 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~-~~~~s~~~d~~~L~~K~~ql~----~lGvr~Fai 82 (166)
+..+.+++.++.|++.|+..+.. .+|. .-.++.++..+.+.+-+..+. +.||+ +++
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~-~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~l 142 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINC-LVGKTPAGFSSEQIHATLVENLRYAANMLMKEDIL-LLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEE-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEE
Confidence 34678999999999999998754 4443 223333343555655555553 56887 665
No 67
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.99 E-value=74 Score=25.14 Aligned_cols=123 Identities=11% Similarity=0.183 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCeEEEEec--CC-CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHH-H
Q psy629 32 GLISAAKEQGIDFYYALS--PG-LDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQ-V 107 (166)
Q Consensus 32 ~L~~~a~~~~v~Fv~ais--PG-~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq-~ 107 (166)
..++.+.+.|+.+|.-=+ |+ ..+.+=..+..+.-..-.+.|.+.|-+.++++...........-.+.|...-..+ .
T Consensus 74 ~~i~~~~~~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~ 153 (273)
T cd06292 74 SHYERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGHRRIGFASGPGRTVPRRRKIAGFRAALEEAGL 153 (273)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHHHcCC
Confidence 345556677777665432 23 2221111123445555556777889999999876544322222223444221110 0
Q ss_pred -----HH---------HHHH-HHHcCC-CCceEccccccccccCCCCCChhHHHHHhhccCCCceEEee
Q psy629 108 -----SV---------TNEV-FEHLGQ-PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWT 160 (166)
Q Consensus 108 -----~l---------~n~v-~~~l~~-~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WT 160 (166)
.+ ...+ .+.+.. +.-+||+....... --.+|++.|...|++|.|+=-
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g------~~~~l~~~g~~ip~di~ii~~ 216 (273)
T cd06292 154 EPPEALVARGMFSVEGGQAAAVELLGSGPTAIVAASDLMALG------AIRAARRRGLRVPEDVSVVGY 216 (273)
T ss_pred CCChhheEeCCCCHHHHHHHHHHHhcCCCCEEEEcCcHHHHH------HHHHHHHcCCCCCcceEEEee
Confidence 00 0111 112221 45667776543321 245677777677788887633
No 68
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=62.90 E-value=11 Score=32.78 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecCC
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSPG 51 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisPG 51 (166)
..+-++||+++|++.|++|++-.||+
T Consensus 136 krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 136 KRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp TS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCCHHHHHHHHHHHcCCeEEEEecch
Confidence 35789999999999999999999997
No 69
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.63 E-value=13 Score=32.09 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCR 78 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr 78 (166)
+++-+.+.+|-++|+++|-++-.-|-|+.-.. + |=.+..+-++.+|++||+
T Consensus 150 ~~Qe~k~~~l~eA~r~~g~ElLlEiI~pk~~~--~--dd~t~~Raier~Y~lGv~ 200 (310)
T COG3892 150 AEQEQKLLELFEAARKSGHELLLEIILPKAGK--S--DDRTVPRAIERFYNLGVY 200 (310)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcccccCC--c--chhHHHHHHHHHHHcCCC
Confidence 46678999999999999999999999877332 1 225777889999999997
No 70
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=62.61 E-value=1e+02 Score=28.66 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=54.7
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+|.|-.|...+.+.+.. +++-++.+++.++.+++.|.+..++ + ..+.-++..+.+-+++-++.+.+.|++.+. +
T Consensus 104 i~~~~Sd~h~~~~l~~s-~~e~l~~~~~~v~~ak~~G~~v~~~--~-e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~--l 177 (524)
T PRK12344 104 IFGKSWDLHVTEALRTT-LEENLAMIRDSVAYLKAHGREVIFD--A-EHFFDGYKANPEYALATLKAAAEAGADWVV--L 177 (524)
T ss_pred EEECCCHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCCeEEEc--c-ccccccccCCHHHHHHHHHHHHhCCCCeEE--E
Confidence 45565544334555544 5677899999999999999876543 2 111001224578888888889999999877 4
Q ss_pred CCCCCCCCHH
Q psy629 85 DDIESEMSEA 94 (166)
Q Consensus 85 DDi~~~~~~~ 94 (166)
=|.-+.+.+.
T Consensus 178 ~DTvG~~~P~ 187 (524)
T PRK12344 178 CDTNGGTLPH 187 (524)
T ss_pred ccCCCCcCHH
Confidence 4555544443
No 71
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=62.18 E-value=80 Score=29.41 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeE----EEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 22 YSVEEAEHLTGLISAAKEQGIDF----YYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~F----v~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
-+-.++..++..++.+++.|-.. +|.+||- -+.+.+++..+++.++|++.++ +=|.-|.+.+.
T Consensus 118 d~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~--------~t~e~~~~~a~~l~~~Gad~I~--IkDtaGll~P~ 184 (499)
T PRK12330 118 DALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPI--------HTVEGFVEQAKRLLDMGADSIC--IKDMAALLKPQ 184 (499)
T ss_pred ecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCC--------CCHHHHHHHHHHHHHcCCCEEE--eCCCccCCCHH
Confidence 33445677888888888888754 5566761 2467888888899999999877 67888777654
No 72
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=61.18 E-value=38 Score=31.84 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=77.2
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCH----HHHHHHHHHHHHHHHcCCC--
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG----KEVATLKRKLEQVAQFGCR-- 78 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~----~d~~~L~~K~~ql~~lGvr-- 78 (166)
+|.|=.|...+.+.+.. .++-++.+++.++.+++.+..+...+++.....|+-+ .+.+.|++=++.+.++|+.
T Consensus 123 i~~~~Sd~h~~~~l~~s-~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~ 201 (564)
T TIGR00970 123 FYNATSILFREVVFRAS-RAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTP 201 (564)
T ss_pred EEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 56666655555667654 6677899999999999998766665555444444432 4688899999999999974
Q ss_pred ----eeEEecCCCCCCCCHHHHHHHhhHH-------------HHH----HHHHHHHHHHc-CCCCceEccccc
Q psy629 79 ----GFALLFDDIESEMSEADKEVFQSFA-------------HAQ----VSVTNEVFEHL-GQPKFMLCPTQY 129 (166)
Q Consensus 79 ----~FailfDDi~~~~~~~d~~~f~~~a-------------~aq----~~l~n~v~~~l-~~~~l~~cPt~Y 129 (166)
.+ -|-|-++.-.+..=.+.+..+- |.| ..++|.+.... |...+--||...
T Consensus 202 ~~~~~i-~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~ 273 (564)
T TIGR00970 202 ERPIIF-NLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGN 273 (564)
T ss_pred CCeeEE-EeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcC
Confidence 33 4556677555543222222211 111 33566666544 555577777665
No 73
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=61.02 E-value=11 Score=28.66 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
.+-|++++++|++.||+.+.-++.+.+
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~d 69 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSWD 69 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeecC
Confidence 588999999999999999999998743
No 74
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=60.97 E-value=81 Score=24.91 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=29.2
Q ss_pred HHHHHHCCCeEEEEec--CCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 34 ISAAKEQGIDFYYALS--PGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 34 ~~~a~~~~v~Fv~ais--PG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
++.+.+.|+.+|.-=+ |+....+-.....+....=.+.|.+.|.+.++++..+..
T Consensus 71 ~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~ 127 (268)
T cd06270 71 LIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGHRKIACITGPLT 127 (268)
T ss_pred HHHHhhCCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCCceEEEEeCCcc
Confidence 4455566766655433 222211101122344444456667789999999876544
No 75
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=60.72 E-value=15 Score=31.65 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=40.2
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 16 AYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 16 ~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
..+-+++..+-+..++.++++|+++|+...++=.=+- ++. =+..|..+|||+|++--+-|
T Consensus 223 ~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~-----~p~-------~~~~Ll~lGi~~lSv~p~~i 282 (293)
T PF02896_consen 223 AYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS-----DPE-------AIPLLLGLGIRSLSVSPDSI 282 (293)
T ss_dssp GGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG-----SHH-------HHHHHHHHT-SEEEE-GGGH
T ss_pred hhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC-----CHH-------HHHHHHHcCCCEEEECHHHH
Confidence 4467788889999999999999999988877632211 122 23456789999999765433
No 76
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=60.72 E-value=96 Score=27.08 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=46.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHH
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEAD 95 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d 95 (166)
|-.....+.+.+.+.++.+++.|......+.= ... .+.+.|.+..+++.+.|++.|. +=|--+.+.+.+
T Consensus 106 ri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~--a~~----~~~e~l~~~a~~~~~~Ga~~i~--i~DT~G~~~P~~ 174 (337)
T PRK08195 106 RVATHCTEADVSEQHIGLARELGMDTVGFLMM--SHM----APPEKLAEQAKLMESYGAQCVY--VVDSAGALLPED 174 (337)
T ss_pred EEEEecchHHHHHHHHHHHHHCCCeEEEEEEe--ccC----CCHHHHHHHHHHHHhCCCCEEE--eCCCCCCCCHHH
Confidence 33334455677899999999999877766542 111 2346677777888889999765 666666665543
No 77
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=60.38 E-value=17 Score=26.97 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHH-----HHHHHHcCCCeeEEecCCCC
Q psy629 42 IDFYYALSPGLDITYSSGKEVATLKRK-----LEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 42 v~Fv~aisPG~~~~~s~~~d~~~L~~K-----~~ql~~lGvr~FailfDDi~ 88 (166)
.-|++.|.||.- +++..+-+. ++-|.+.|+|.++|+.|+=.
T Consensus 4 ~af~m~l~p~~~------eEYk~rH~~vWPE~~a~lk~agi~nYSIfLde~~ 49 (105)
T COG3254 4 YAFVMKLKPGKH------EEYKRRHDAVWPELLALLKEAGIRNYSIFLDEEE 49 (105)
T ss_pred eEEEEEeCcchH------HHHHHhhccccHHHHHHHHHcCCceeEEEecCCc
Confidence 459999999864 333333322 45677899999999999944
No 78
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=59.95 E-value=19 Score=29.40 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCe-EEEEe-cC
Q psy629 22 YSVEEAEHLTGLISAAKEQGID-FYYAL-SP 50 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~-Fv~ai-sP 50 (166)
|+++|++.+++-++.+++.|++ ||++. .|
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~ 96 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE 96 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC
Confidence 9999999999999999999976 66664 45
No 79
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=59.76 E-value=61 Score=30.36 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
.|.+-|+..-...+..+..||=|+|- .-+.++.++. ..-.++.|+|-|+|-
T Consensus 248 ~L~~AV~~rl~sd~pvg~~LSGGlDS-----s~Iaa~~~~~---~~~~l~tftigf~~~ 298 (589)
T TIGR03104 248 ALRLAVKRRLVADVPVGVLLSGGLDS-----SLIVGLLAEA---GVDGLRTFSIGFEDV 298 (589)
T ss_pred HHHHHHHHHhhcCCceeEEecCCccH-----HHHHHHHHHh---cCCCceEEEEEecCC
Confidence 34444444456789999999999982 3355555543 223588999999874
No 80
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=59.50 E-value=14 Score=29.74 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
..++|++|+++|+++||+.+.=+-|
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhhhhccccccceEEEeeec
Confidence 3689999999999999999988877
No 81
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=59.48 E-value=81 Score=29.92 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHCCCe----EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 25 EEAEHLTGLISAAKEQGID----FYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~----Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
.++..++..++.+++.|.. ++|..+|- .+.+-+.+.++++.++|++.++ +=|..|.+.+.
T Consensus 121 nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~--------~~~~~~~~~a~~l~~~Gad~i~--i~Dt~G~l~P~ 184 (593)
T PRK14040 121 NDPRNLETALKAVRKVGAHAQGTLSYTTSPV--------HTLQTWVDLAKQLEDMGVDSLC--IKDMAGLLKPY 184 (593)
T ss_pred CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCc--------cCHHHHHHHHHHHHHcCCCEEE--ECCCCCCcCHH
Confidence 3457788889999988875 55666661 2367788888899999999777 66888777654
No 82
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.41 E-value=37 Score=27.89 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
.+.|++|++.|++.||.+.+=-+++..+ ++.++.-.+ +.++|-..+++.+|
T Consensus 137 ~~~l~~l~~~A~~~GV~i~iE~~~~~~~--~~~~~~~~l------l~~v~~~~lgl~~D 187 (283)
T PRK13209 137 IDGLKESVELASRASVTLAFEIMDTPFM--NSISKALGY------AHYLNSPWFQLYPD 187 (283)
T ss_pred HHHHHHHHHHHHHhCCEEEEeecCCccc--CCHHHHHHH------HHHhCCCccceEec
Confidence 4677888888888888766665554322 232332222 22346667777776
No 83
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=59.32 E-value=24 Score=30.74 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=37.6
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHCC-----CeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 12 YKHRAYWRDLYSVEEAEHLTGLISAAKEQG-----IDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 12 pyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~-----v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
+-.....+..++.++..+ .++.+++.| ++|++++ ||.+. +.+.+-++.+.++|+.++.++
T Consensus 131 ~~~L~~l~R~~s~~~~~~---a~~~l~~~g~~~v~~dli~Gl-Pgqt~--------~~~~~tl~~~~~l~~~~i~~y 195 (375)
T PRK05628 131 PHVLAVLDRTHTPGRAVA---AAREARAAGFEHVNLDLIYGT-PGESD--------DDWRASLDAALEAGVDHVSAY 195 (375)
T ss_pred HHHHHHcCCCCCHHHHHH---HHHHHHHcCCCcEEEEEeccC-CCCCH--------HHHHHHHHHHHhcCCCEEEee
Confidence 344455566677666543 344444444 4466666 76643 556777888889999998765
No 84
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=59.15 E-value=44 Score=30.23 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=46.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEE--EecCCCCCCCC---CHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYY--ALSPGLDITYS---SGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~--aisPG~~~~~s---~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+.||.+++.++|+.++. .|.++-. .+.|--+|... .++.++..++=|+.|-++||.-++-.|
T Consensus 38 evW~~~~i~~~k~~ie~---~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNF 104 (394)
T TIGR00695 38 EVWEKEEIRKRKEYIES---AGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNF 104 (394)
T ss_pred CCCCHHHHHHHHHHHHH---cCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 67888888888877776 6777665 44444456544 367899999999999999999877654
No 85
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.13 E-value=98 Score=28.16 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEec-CCC-----------------------------------------------CCCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALS-PGL-----------------------------------------------DITYSS 58 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~ais-PG~-----------------------------------------------~~~~s~ 58 (166)
.+++++|++.|++.||+.|=-|- ||- -+|-++
T Consensus 96 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~~ 175 (445)
T cd06569 96 RADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPCM 175 (445)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCCc
Confidence 35678899999999999875441 221 123345
Q ss_pred HHHHHHHHHHHHHHHHc------CCCeeEEecCCCCCC---CCHHHH-------HHHhhHHHHHHHHHHHHHHHcC
Q psy629 59 GKEVATLKRKLEQVAQF------GCRGFALLFDDIESE---MSEADK-------EVFQSFAHAQVSVTNEVFEHLG 118 (166)
Q Consensus 59 ~~d~~~L~~K~~ql~~l------Gvr~FailfDDi~~~---~~~~d~-------~~f~~~a~aq~~l~n~v~~~l~ 118 (166)
++-++-|.+=|+++.++ -.+-|=|-.|.+... .+.+-+ +.+.+....|..+++++.+.+.
T Consensus 176 ~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~v~~~l~ 251 (445)
T cd06569 176 PSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKDYFFERVSKILK 251 (445)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 66777777777887775 336788889999853 122211 2234566788889999887654
No 86
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.76 E-value=49 Score=26.98 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCC---CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPG---LDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG---~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
.+.|++|++.|.+.||++ ++.|- ....+.+.++...|++ ++|-..+++++ |+.
T Consensus 128 ~~~l~~l~~~a~~~gv~l--~iE~~~~~~~~~~~t~~~~~~l~~------~~~~~~v~~~~-D~~ 183 (275)
T PRK09856 128 AENLSELCEYAENIGMDL--ILEPLTPYESNVVCNANDVLHALA------LVPSPRLFSMV-DIC 183 (275)
T ss_pred HHHHHHHHHHHHHcCCEE--EEecCCCCcccccCCHHHHHHHHH------HcCCCcceeEE-eec
Confidence 468999999999999876 45542 1222344555555443 45556677777 444
No 87
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.29 E-value=98 Score=25.01 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHHCCCeEEEEecC---CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 34 ISAAKEQGIDFYYALSP---GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisP---G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
++...+.++.+|.-=++ +..+.+-..++.+....=.+.|.+.|.+.++++....
T Consensus 72 ~~~l~~~~iPvV~i~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~ 128 (269)
T cd06287 72 VARLRQRGIPVVSIGRPPGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALIVGSA 128 (269)
T ss_pred HHHHHHcCCCEEEeCCCCCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEEeCCc
Confidence 34455678887765432 1111111112345556666778889999999886543
No 88
>PRK09989 hypothetical protein; Provisional
Probab=58.23 E-value=61 Score=26.40 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHCCCeEEEE-ecCCC--CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 26 EAEHLTGLISAAKEQGIDFYYA-LSPGL--DITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~a-isPG~--~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
-.+.|+++++.|++.||.++.- |.|+. +..+.+.++...| +.++|-..+++.+|=
T Consensus 122 ~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~l------l~~v~~~~v~l~lD~ 179 (258)
T PRK09989 122 FIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAI------VEEVARDNVFIQLDT 179 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHHHHH------HHHcCCCCeEEEeeh
Confidence 3578899999999999988763 44432 2223333333333 345677778888883
No 89
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=57.55 E-value=64 Score=30.48 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+..+..+++..++.+++.|.....+|+= .++.--+.+.+.+.++++.++|++.++ +=|..|.+.+.
T Consensus 113 ~lnd~~n~~~~i~~ak~~G~~v~~~i~~----t~~p~~~~~~~~~~~~~~~~~Gad~I~--i~Dt~G~~~P~ 178 (582)
T TIGR01108 113 ALNDPRNLQAAIQAAKKHGAHAQGTISY----TTSPVHTLETYLDLAEELLEMGVDSIC--IKDMAGILTPK 178 (582)
T ss_pred ecCcHHHHHHHHHHHHHcCCEEEEEEEe----ccCCCCCHHHHHHHHHHHHHcCCCEEE--ECCCCCCcCHH
Confidence 3344578999999999999887766532 111112467788888899999999866 67888776654
No 90
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=57.15 E-value=1.3e+02 Score=26.67 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCC----C----------------------------------CCCCCHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGL----D----------------------------------ITYSSGKEVATLKRKLE 70 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~----~----------------------------------~~~s~~~d~~~L~~K~~ 70 (166)
.++++++..++.|++++.-++|+. . ++|++.+..+-..++++
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 163 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLK 163 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHH
Confidence 788999999999999999999942 1 34666666777789999
Q ss_pred HHHHc-CCCeeEEecCCCC
Q psy629 71 QVAQF-GCRGFALLFDDIE 88 (166)
Q Consensus 71 ql~~l-Gvr~FailfDDi~ 88 (166)
++.+. ||+.|-+=+-+-.
T Consensus 164 ~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 164 ELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHTTST-SEEEEESTTTB
T ss_pred HHHhccCCceEEeecCCcc
Confidence 99999 9999997764444
No 91
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=57.10 E-value=28 Score=31.10 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=55.1
Q ss_pred eeccCCChhhhhhhcc-----------------CCCHHHHHHHHHHHHHHHHCCCeEEEEecC----CCCCCCCC---HH
Q psy629 5 LYAPKDDYKHRAYWRD-----------------LYSVEEAEHLTGLISAAKEQGIDFYYALSP----GLDITYSS---GK 60 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre-----------------~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP----G~~~~~s~---~~ 60 (166)
+|+| +||--=..||+ .||.+++.++|+.++.+- ++|..-+ -.+|.... ++
T Consensus 7 w~g~-~D~v~l~~irQ~Gv~gIV~aLh~iP~g~~W~~~~I~~~k~~ie~~G-----l~~~vvESvPvhedIK~g~~~rd~ 80 (362)
T COG1312 7 WYGP-NDPVTLEDIRQAGVKGVVTALHHIPAGEVWPVEEILKRKEEIESAG-----LTWSVVESVPVHEDIKLGTPTRDR 80 (362)
T ss_pred EecC-CCCccHHHHHHhCccceeccCCCCCCCCcCcHHHHHHHHHHHHHcC-----ceEEeecCCCHHHHHHhcCCcHHH
Confidence 6788 56666666664 789999999999888765 5554443 23455543 57
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
.++.-++-++.|..+||+-.+-.|=
T Consensus 81 ~Ieny~~tirnLa~~GI~vvCYNfM 105 (362)
T COG1312 81 YIENYKQTIRNLARAGIKVVCYNFM 105 (362)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeccc
Confidence 8999999999999999998776543
No 92
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=57.07 E-value=12 Score=34.43 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
-.++||++.-+++|++.-|||||
T Consensus 324 h~v~el~~~L~~~Gv~V~faIHP 346 (462)
T PRK09444 324 YPVAEITEKLRARGINVRFGIHP 346 (462)
T ss_pred HHHHHHHHHHHHCCCeEEEEecc
Confidence 47899999999999999999999
No 93
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=56.42 E-value=36 Score=30.70 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=38.4
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHHHCC-----CeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 12 YKHRAYWRDLYSVEEAEHLTGLISAAKEQG-----IDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 12 pyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~-----v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
+-....-+..++.++.. +.++.+++.| ++|++++ ||.+ .+.+.+-++.+.++|+++++++
T Consensus 175 ~~vl~~l~R~~~~~~~~---~ai~~lr~~G~~~v~~dli~Gl-Pgqt--------~e~~~~tl~~~~~l~p~~i~~y 239 (453)
T PRK13347 175 PQVQKAINRIQPEEMVA---RAVELLRAAGFESINFDLIYGL-PHQT--------VESFRETLDKVIALSPDRIAVF 239 (453)
T ss_pred HHHHHHhCCCCCHHHHH---HHHHHHHhcCCCcEEEeEEEeC-CCCC--------HHHHHHHHHHHHhcCCCEEEEe
Confidence 34445556667666543 3444445544 4567776 6653 3567777888889999998875
No 94
>PLN02321 2-isopropylmalate synthase
Probab=56.35 E-value=45 Score=31.92 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=55.6
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+|.|-.|...+.+.+.. +++-++.+.+.++.|++.|.. .+..+|- | .+..+.+.|++-++.+.++|++.+.| -
T Consensus 188 i~~stSd~h~~~~l~~t-~ee~l~~~~~~V~~Ak~~G~~-~v~fs~E-D---a~rtd~d~l~~~~~~a~~aGa~~I~L-~ 260 (632)
T PLN02321 188 TFIATSEIHMEHKLRKT-PDEVVEIARDMVKYARSLGCE-DVEFSPE-D---AGRSDPEFLYRILGEVIKAGATTLNI-P 260 (632)
T ss_pred EEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCc-eEEEecc-c---CCCCCHHHHHHHHHHHHHcCCCEEEe-c
Confidence 55666555555677754 667789999999999999874 2333452 2 22345788888899999999998763 3
Q ss_pred CCCCCCCC
Q psy629 85 DDIESEMS 92 (166)
Q Consensus 85 DDi~~~~~ 92 (166)
|-++.-.+
T Consensus 261 DTvG~~~P 268 (632)
T PLN02321 261 DTVGYTLP 268 (632)
T ss_pred ccccCCCH
Confidence 55554444
No 95
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.47 E-value=1.3e+02 Score=25.61 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=65.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCCeEEEEec-----------CC-----------CCCCCCCHHHHHHHHHHHHHHHHc-
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGIDFYYALS-----------PG-----------LDITYSSGKEVATLKRKLEQVAQF- 75 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais-----------PG-----------~~~~~s~~~d~~~L~~K~~ql~~l- 75 (166)
+..|+.+| +++|++.|++.||+.+=.|- |. ..++-++++.++-+.+=++++.++
T Consensus 54 ~~~yT~~e---i~ei~~yA~~~gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f 130 (301)
T cd06565 54 RGAYTKEE---IREIDDYAAELGIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELH 130 (301)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 57788665 67788999999999875431 21 124556677788888888888874
Q ss_pred CCCeeEEecCCCCCC-CCHH-HHHHHhhHHHHHHHHHHHHHHHcCC
Q psy629 76 GCRGFALLFDDIESE-MSEA-DKEVFQSFAHAQVSVTNEVFEHLGQ 119 (166)
Q Consensus 76 Gvr~FailfDDi~~~-~~~~-d~~~f~~~a~aq~~l~n~v~~~l~~ 119 (166)
.-+.|=|-.|.+... .+.. ++....+.+..++..+|+|.+.+..
T Consensus 131 ~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~ 176 (301)
T cd06565 131 PSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKK 176 (301)
T ss_pred CCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 346688888998742 2222 2223445667788888888877644
No 96
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=55.37 E-value=55 Score=27.21 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceE
Q psy629 59 GKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFML 124 (166)
Q Consensus 59 ~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~ 124 (166)
.++++.++.++.+..+..-+.+-|++||++.-.++ ....+++.|...+..+.++|
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~-----------~i~~~l~~ik~~~~~~~i~~ 207 (325)
T PF07693_consen 153 KKEVEELISKIKKKLKESKKRIVIIIDDLDRCSPE-----------EIVELLEAIKLLLDFPNIIF 207 (325)
T ss_pred hHHHHHHHHHHHHhhhcCCceEEEEEcchhcCCcH-----------HHHHHHHHHHHhcCCCCeEE
Confidence 35677788888888888889999999999976553 24456666665556565433
No 97
>smart00642 Aamy Alpha-amylase domain.
Probab=55.15 E-value=19 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPG 51 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG 51 (166)
.++|++|+++|+++||+.+.=+-|.
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5899999999999999999999883
No 98
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=54.98 E-value=1.2e+02 Score=24.97 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=29.5
Q ss_pred HHHHHHCCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 34 ISAAKEQGIDFYYALSP--GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisP--G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
++..++.++.+|.-=.+ +..+++-...+.+....=.+.|.+.|.+.++++...
T Consensus 133 ~~~l~~~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~ 187 (327)
T TIGR02417 133 YQKLQNEGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHADEFWYLGAQ 187 (327)
T ss_pred HHHHHhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEeCc
Confidence 34455667777654332 322222111223334444567899999999988644
No 99
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=54.96 E-value=68 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 22 YSVEEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.=..|+..|.++.+.-++.||. +++||.
T Consensus 40 ~C~~el~~l~~~~~~f~~~gv~-vigvS~ 67 (203)
T cd03016 40 VCTTELGAFAKLAPEFKKRNVK-LIGLSV 67 (203)
T ss_pred cCHHHHHHHHHHHHHHHHcCCE-EEEEEC
Confidence 3356788888888888889987 578876
No 100
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=54.94 E-value=21 Score=28.66 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCC--C---CCCCCCH----HHHHHHHHHHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPG--L---DITYSSG----KEVATLKRKLEQVAQ 74 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG--~---~~~~s~~----~d~~~L~~K~~ql~~ 74 (166)
.+.++-++.|+++++.|+++|+..+..+|.. . +..+... +.+..+.+.+.+-+.
T Consensus 55 ~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~ 117 (281)
T PF00150_consen 55 NYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYK 117 (281)
T ss_dssp SBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccC
Confidence 4678999999999999999999999999984 2 1222222 235555666777663
No 101
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=54.11 E-value=68 Score=26.57 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
+.+....+.+.++.+..++.|+.+ .+|+|. + +. ..++.|.++|++.+.+-+|
T Consensus 91 ~~~~~~~~~~~~i~~~~~~~~i~~--~~~~g~-~---~~-------e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 91 PKDREFMEYVEAMVQIVEEMGLKT--CATLGL-L---DP-------EQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred CChHHHHHHHHHHHHHHHhCCCeE--EecCCC-C---CH-------HHHHHHHHcCCCEEEEccc
Confidence 333333455555655555566544 445552 1 11 3456788999999998877
No 102
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=54.07 E-value=8.3 Score=33.75 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEe--cCCCCCCCCHH-HHHHHhhHHHHHHHHHHHHH
Q psy629 60 KEVATLKRKLEQVAQFGCRGFALL--FDDIESEMSEA-DKEVFQSFAHAQVSVTNEVF 114 (166)
Q Consensus 60 ~d~~~L~~K~~ql~~lGvr~Fail--fDDi~~~~~~~-d~~~f~~~a~aq~~l~n~v~ 114 (166)
+-+...+.++++++++|||.+++- .|+.-+..|.+ .-....++|..-++.+|++-
T Consensus 105 ~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~Lg 162 (313)
T COG2355 105 EPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELG 162 (313)
T ss_pred ccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcC
Confidence 456777889999999999999986 44444443322 11134467777788888864
No 103
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.42 E-value=1.5e+02 Score=25.50 Aligned_cols=88 Identities=19% Similarity=0.276 Sum_probs=60.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEe-cCC-----------------------CCCCCCCHHHHHHHHHHHHHHHHc
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYAL-SPG-----------------------LDITYSSGKEVATLKRKLEQVAQF 75 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai-sPG-----------------------~~~~~s~~~d~~~L~~K~~ql~~l 75 (166)
..|+. +++++|++.|++.||+.+=-| .|| ..++.++++.++-|.+=++++.++
T Consensus 77 ~~YT~---~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~ 153 (326)
T cd06564 77 GYYTK---EEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG 153 (326)
T ss_pred CcccH---HHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh
Confidence 34554 567889999999999987444 122 124556778888888888888874
Q ss_pred C---CCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC
Q psy629 76 G---CRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119 (166)
Q Consensus 76 G---vr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~ 119 (166)
= -..|=|-.|.+.... +....+...+|++.+.+..
T Consensus 154 f~~~~~~~HiGgDE~~~~~---------~~~~~~~~f~~~~~~~v~~ 191 (326)
T cd06564 154 FNPKSDTVHIGADEYAGDA---------GYAEAFRAYVNDLAKYVKD 191 (326)
T ss_pred cCCCCCEEEeccccccccC---------ccHHHHHHHHHHHHHHHHH
Confidence 3 467888888888642 2235677788888776644
No 104
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.37 E-value=1.5e+02 Score=25.77 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEe------------cCCC------------------CCCCCCHHHHHHHHHHHHHHHHc-
Q psy629 27 AEHLTGLISAAKEQGIDFYYAL------------SPGL------------------DITYSSGKEVATLKRKLEQVAQF- 75 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~ai------------sPG~------------------~~~~s~~~d~~~L~~K~~ql~~l- 75 (166)
.+++++|++.|+++||+.+=-| .|.+ .++-++++.++-+.+=++++.++
T Consensus 85 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF 164 (357)
T cd06563 85 QEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 4567889999999999987443 2211 13445667777777777777763
Q ss_pred CCCeeEEecCCCCCC---CCHHHHH-----HHhhHHHHHHHHHHHHHHHcC
Q psy629 76 GCRGFALLFDDIESE---MSEADKE-----VFQSFAHAQVSVTNEVFEHLG 118 (166)
Q Consensus 76 Gvr~FailfDDi~~~---~~~~d~~-----~f~~~a~aq~~l~n~v~~~l~ 118 (166)
.-+.|=|-.|.+... .+++-++ .+.+....+..+++++.+.+.
T Consensus 165 ~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~ 215 (357)
T cd06563 165 PSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILA 215 (357)
T ss_pred CCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 356688889998753 2222222 223455677778888877653
No 105
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=53.08 E-value=94 Score=23.19 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCC-CeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 27 AEHLTGLISAAKEQG-IDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 27 l~~l~~L~~~a~~~~-v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
.+++.+-++.+++.| +.+...+-||+.- .+.+++.. -++.+.++|++...+
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~g~~~--~~~~~~~~---~~~~~~~~~~~~i~~ 186 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIVGLPG--ETEEDFEE---TLKLLKELGPDRVSI 186 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEecCCC--CCHHHHHH---HHHHHHHcCCCeEEe
Confidence 366667777777788 7777777777652 13344444 444477889886543
No 106
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=52.56 E-value=1.6e+02 Score=25.67 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEe-cCCC-----------------------------CCCCCCHHHHHHHHHHHHHHHHc-
Q psy629 27 AEHLTGLISAAKEQGIDFYYAL-SPGL-----------------------------DITYSSGKEVATLKRKLEQVAQF- 75 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~ai-sPG~-----------------------------~~~~s~~~d~~~L~~K~~ql~~l- 75 (166)
.+++++|++.|++.||+.+=-| .||- .++-++++.++-|.+=|+.+.++
T Consensus 69 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF 148 (348)
T cd06562 69 PEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELF 148 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhc
Confidence 3567889999999999988655 2331 13334556666666666666663
Q ss_pred CCCeeEEecCCCCCCC---CHHH-----HHHHhhHHHHHHHHHHHHHHHcCC
Q psy629 76 GCRGFALLFDDIESEM---SEAD-----KEVFQSFAHAQVSVTNEVFEHLGQ 119 (166)
Q Consensus 76 Gvr~FailfDDi~~~~---~~~d-----~~~f~~~a~aq~~l~n~v~~~l~~ 119 (166)
..+.|-|-.|.+.... +++- ++.+.+....|..+++++.+.+..
T Consensus 149 ~~~~iHiGgDE~~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~ 200 (348)
T cd06562 149 PDKYFHLGGDEVNFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRS 200 (348)
T ss_pred CCcceEeecCCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3566778899987531 2221 122345667888899998876643
No 107
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=52.55 E-value=80 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
++.|++|+++|+++||+.+.=+-|
T Consensus 74 ~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 74 MADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 478999999999999998765443
No 108
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=52.27 E-value=16 Score=30.36 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
..+.++++..++.|++.+.||+|+.+
T Consensus 95 ~~~~~~i~~Ik~~G~kaGlalnP~T~ 120 (229)
T PRK09722 95 GQAFRLIDEIRRAGMKVGLVLNPETP 120 (229)
T ss_pred chHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 35778899999999999999999854
No 109
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=52.15 E-value=1.4e+02 Score=24.76 Aligned_cols=118 Identities=11% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHCCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHH-H----
Q psy629 35 SAAKEQGIDFYYALSP--GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQ-V---- 107 (166)
Q Consensus 35 ~~a~~~~v~Fv~aisP--G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq-~---- 107 (166)
+..++.++.+|.-=.+ +.++.+-..++.+.-..=.+.|.+.|.+.++++-.+........=.+.|......+ .
T Consensus 130 ~~l~~~~~pvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~ 209 (327)
T PRK10339 130 AAASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREE 209 (327)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCeEEEeCCccccchhhHHHHHHHHHHHHcCCCChh
Confidence 3444556766653332 22222111122344444457788899999999854332111111122333221110 0
Q ss_pred HH----------HHHHHHHcC---CCCceEccccccccccCCCCCChhHHHHHhhccCCCceEE
Q psy629 108 SV----------TNEVFEHLG---QPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIM 158 (166)
Q Consensus 108 ~l----------~n~v~~~l~---~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~ 158 (166)
.+ .+.+.+.+. .+.-+||......- +--.++++.|-..|.+|.|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~D~~A~------g~~~al~~~g~~vP~di~vi 267 (327)
T PRK10339 210 DIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAI------GVLRAIHERGLNIPQDISLI 267 (327)
T ss_pred heeecCcChhHHHHHHHHHHhCCCCCCEEEECCcHHHH------HHHHHHHHcCCCCCCceEEE
Confidence 00 011122232 23467776654432 23467788877788888876
No 110
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=52.15 E-value=1.1e+02 Score=23.94 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHHHCCCeEEEEecC---CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 34 ISAAKEQGIDFYYALSP---GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisP---G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
++.+++.|+.+|.-=++ +..+.+-.....+.-..-.+.|.+.|.+..+++-.+..
T Consensus 71 ~~~~~~~~ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~ 128 (270)
T cd06296 71 RAALRRTGIPFVVVDPAGDPDADVPSVGATNWAGGLAATEHLLELGHRRIGFITGPPD 128 (270)
T ss_pred HHHHhcCCCCEEEEecccCCCCCCCEEEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCc
Confidence 44555567666553332 22221111122334444455777789999999866543
No 111
>PRK01060 endonuclease IV; Provisional
Probab=51.92 E-value=63 Score=26.44 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-HHHHHHHHHHHHHH
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSS-GKEVATLKRKLEQV 72 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~-~~d~~~L~~K~~ql 72 (166)
++.+++.++.|++.|+. ++.+|||....-.. ++.++.+.+-++++
T Consensus 88 ~~~~~~~i~~A~~lga~-~vv~h~G~~~~~~~~~~~~~~~~e~l~~l 133 (281)
T PRK01060 88 RDFLIQEIERCAALGAK-LLVFHPGSHLGDIDEEDCLARIAESLNEA 133 (281)
T ss_pred HHHHHHHHHHHHHcCCC-EEEEcCCcCCCCCcHHHHHHHHHHHHHHH
Confidence 56788888888888888 44558875422122 23455566566655
No 112
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.85 E-value=1.2e+02 Score=28.03 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHCCCeE----EEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 26 EAEHLTGLISAAKEQGIDF----YYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~F----v~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+...++..++.+++.|... +|.+|| ..+++-+.+..+++.++|++.++ +=|.-|.+.+.
T Consensus 130 d~~n~~~ai~~ak~~G~~~~~~i~yt~sp--------~~t~~y~~~~a~~l~~~Gad~I~--IkDtaG~l~P~ 192 (468)
T PRK12581 130 DPRNIQQALRAVKKTGKEAQLCIAYTTSP--------VHTLNYYLSLVKELVEMGADSIC--IKDMAGILTPK 192 (468)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEEEEeCC--------cCcHHHHHHHHHHHHHcCCCEEE--ECCCCCCcCHH
Confidence 4577788888888888763 344444 23467788888899999999766 66887777654
No 113
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=51.78 E-value=40 Score=23.56 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=34.3
Q ss_pred HHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629 37 AKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS 92 (166)
Q Consensus 37 a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~ 92 (166)
|+..++.| +-++.+....-...+..+.+..-|++..+.+ +.--|++||++....
T Consensus 19 a~~l~~~~-~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 19 AQYLGFPF-IEIDGSELISSYAGDSEQKIRDFFKKAKKSA-KPCVLFIDEIDKLFP 72 (132)
T ss_dssp HHHTTSEE-EEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-TSEEEEEETGGGTSH
T ss_pred Hhhccccc-ccccccccccccccccccccccccccccccc-cceeeeeccchhccc
Confidence 44457776 5566544332222345577777788877777 557888999996543
No 114
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=51.74 E-value=1.1e+02 Score=28.32 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCC----eEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCH
Q psy629 30 LTGLISAAKEQGI----DFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSE 93 (166)
Q Consensus 30 l~~L~~~a~~~~v----~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~ 93 (166)
++.-++++++.|- ...|++||= -.++.-+....+|.++||++++ +-|+.|-+.+
T Consensus 127 l~~ai~a~kk~G~h~q~~i~YT~sPv--------Ht~e~yv~~akel~~~g~DSIc--iKDmaGlltP 184 (472)
T COG5016 127 LKTAIKAAKKHGAHVQGTISYTTSPV--------HTLEYYVELAKELLEMGVDSIC--IKDMAGLLTP 184 (472)
T ss_pred HHHHHHHHHhcCceeEEEEEeccCCc--------ccHHHHHHHHHHHHHcCCCEEE--eecccccCCh
Confidence 3334444444442 345666672 2356777788899999999877 8999998765
No 115
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=51.67 E-value=50 Score=29.80 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHH----HCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 21 LYSVEEAEHLTGLISAAK----EQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~----~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
.++....++..+.++.++ .-+++|+||+ ||.+ .+.+.+=++.+.++|++++.+.-=-
T Consensus 177 ~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~Gl-PgqT--------~e~~~~~l~~~~~l~p~~is~y~L~ 237 (433)
T PRK08629 177 YEKFGSGQETFEKIMKAKGLFPIINVDLIFNF-PGQT--------DEVLQHDLDIAKRLDPRQITTYPLM 237 (433)
T ss_pred CCChhHHHHHHHHHHHHhccCCeEEEEEEccC-CCCC--------HHHHHHHHHHHHhCCCCEEEEccce
Confidence 455444444444444443 3467899998 8774 3567778888899999998887433
No 116
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=51.27 E-value=87 Score=29.19 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 53 DITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 53 ~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
++++++++-.+.|+.=+....+.||+-|=+
T Consensus 170 dLn~~np~V~~~l~~~~~~W~~~GvDGfRl 199 (551)
T PRK10933 170 DLNWENPAVRAELKKVCEFWADRGVDGLRL 199 (551)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 344556666788888888888999998874
No 117
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=51.17 E-value=1.2e+02 Score=23.74 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=29.5
Q ss_pred HHHHHHHCCCeEEEEec-C-CC--C-CCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 33 LISAAKEQGIDFYYALS-P-GL--D-ITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 33 L~~~a~~~~v~Fv~ais-P-G~--~-~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
..+.+++.|+.++.--. + .. . +..++ .+.-..-.+.|.+.|.+.++++.++..
T Consensus 70 ~~~~~~~~~ipvv~~~~~~~~~~~~~v~~d~---~~~~~~~~~~l~~~g~~~i~~i~~~~~ 127 (268)
T cd01575 70 TRQLLRAAGIPVVEIMDLPPDPIDMAVGFSH---AEAGRAMARHLLARGYRRIGFLGARMD 127 (268)
T ss_pred HHHHHHhcCCCEEEEecCCCCCCCCeEEeCc---HHHHHHHHHHHHHCCCCcEEEecCCCC
Confidence 34445566777664321 1 11 1 12222 234444456788899999999876544
No 118
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=50.92 E-value=23 Score=23.45 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=30.1
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEe
Q psy629 13 KHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYAL 48 (166)
Q Consensus 13 yhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai 48 (166)
+-+.-||.|=+++|++.+-++.+.+.++|-+|.=||
T Consensus 10 Fa~rAfRRp~~~~e~~~~~~~~~~~~~~g~~~~~a~ 45 (64)
T PF07637_consen 10 FARRAFRRPLTDEEVDRYLALYDSARAQGEDFEEAL 45 (64)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 345679999999999999999999999987665444
No 119
>PRK12465 xylose isomerase; Provisional
Probab=50.39 E-value=2.1e+02 Score=26.41 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccccc------ccccc
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQY------CSTRA 134 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y------~~~~~ 134 (166)
...++-+.|+-+.+||+--|+.-=+||-.... ..+|...++.. .+..+.+..+..|.+-+...+--+ .+...
T Consensus 87 Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~-s~~E~~~nld~-iv~~~k~~~~~tGikllw~TaNlFs~prf~~GA~T 164 (445)
T PRK12465 87 AEAKSDAAFEFFTKLGVPYYCFHDIDLAPDAD-DIGEYESNLKH-MVGIAKQRQADTGIKLLWGTANLFSHPRYMNGAST 164 (445)
T ss_pred HHHHHHHHHHHHHHhCCCeeeccccccCCCCC-CHHHHHHHHHH-HHHHHHHHhhhhCceeeeeccccccCccccCCcCC
Confidence 45666677888999999999843334433322 22333223322 233333333333444333333333 33333
Q ss_pred CCCCCChhH-----H--HHHhhccCCCceEEeeCCC
Q psy629 135 VPNVKNSEY-----L--NTLGSKLAKEIDIMWTGPK 163 (166)
Q Consensus 135 ~~~~~~~~Y-----l--~~l~~~L~~~i~i~WTG~~ 163 (166)
+|+..--.| . -++++.|.-+..|||-|..
T Consensus 165 nPD~~Vra~A~~qvk~alD~~~eLGgenyV~WGGRE 200 (445)
T PRK12465 165 NPDFNVVARAAVQVKAAIDATVELGGENYVFWGGRE 200 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 332210000 0 1367788999999999964
No 120
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.33 E-value=1e+02 Score=22.86 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHH--CCCeEEEE-ecCCCCCCCCCHHHHHHHHHHHHHHHH-cCCCe
Q psy629 23 SVEEAEHLTGLISAAKE--QGIDFYYA-LSPGLDITYSSGKEVATLKRKLEQVAQ-FGCRG 79 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~--~~v~Fv~a-isPG~~~~~s~~~d~~~L~~K~~ql~~-lGvr~ 79 (166)
+++-.+.+.+|++.+++ .++++++. +.|.........+.+..+.+.+.++.+ -|+.-
T Consensus 67 ~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~ 127 (169)
T cd01828 67 DEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTF 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 56667899999999999 88998884 444321222234556666666666644 45543
No 121
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=50.32 E-value=1.1e+02 Score=28.89 Aligned_cols=67 Identities=16% Similarity=0.353 Sum_probs=49.2
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYAL----SPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSE 93 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai----sPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~ 93 (166)
+|-.-+-.++.+++..++.+++.|.....+| +| + -+.+.+++..+++.++|++.++ +=|..|.+.+
T Consensus 113 irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p-----~---~t~~~~~~~a~~l~~~Gad~I~--i~Dt~G~~~P 182 (592)
T PRK09282 113 FRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSP-----V---HTIEKYVELAKELEEMGCDSIC--IKDMAGLLTP 182 (592)
T ss_pred EEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCC-----C---CCHHHHHHHHHHHHHcCCCEEE--ECCcCCCcCH
Confidence 4455555667889999999999998777555 33 1 1357778888888999999876 5588877665
Q ss_pred H
Q psy629 94 A 94 (166)
Q Consensus 94 ~ 94 (166)
.
T Consensus 183 ~ 183 (592)
T PRK09282 183 Y 183 (592)
T ss_pred H
Confidence 4
No 122
>PRK01060 endonuclease IV; Provisional
Probab=50.21 E-value=46 Score=27.27 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEE-EEecCCCCCCCCC------HHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFY-YALSPGLDITYSS------GKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv-~aisPG~~~~~s~------~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
.++++++++++++ +.++|+..+ +.+|-...+++++ +..++.+++-++...++|+..+.+..-
T Consensus 43 ~~~~~~~~~lk~~---~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 43 PLEELNIEAFKAA---CEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CCCHHHHHHHHHH---HHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4677776666655 668888843 2333333334443 234777888888889999998887644
No 123
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.98 E-value=77 Score=27.91 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEe-cC--CCCCCCCC---HHHHHHHHHHHHHHHH--cCCCeeEEe
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYAL-SP--GLDITYSS---GKEVATLKRKLEQVAQ--FGCRGFALL 83 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~ai-sP--G~~~~~s~---~~d~~~L~~K~~ql~~--lGvr~Fail 83 (166)
..+++.|++++++|++.|+-|+.-+ .+ |..+..+. ..+-+.+..=....++ +|++.+=+-
T Consensus 139 ~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve 206 (340)
T PRK12858 139 DRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVE 206 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEee
Confidence 3567899999999999999999873 44 44443320 0223456666666774 999766553
No 124
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.91 E-value=28 Score=28.65 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
.+++.++++.++++|++.+.+++|..+
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 357889999999999999999999654
No 125
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=49.41 E-value=40 Score=29.27 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=33.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCC-----CeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQG-----IDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~-----v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
....++.++ ..+.++.+++.| ++|++++ ||.+ .+.+.+=++.+.++|+.++.+.
T Consensus 127 lgR~~~~~~---~~~ai~~lr~~g~~~v~iDli~Gl-Pgqt--------~~~~~~~l~~~~~l~~~~is~y 185 (350)
T PRK08446 127 LGRIHSQKQ---IIKAIENAKKAGFENISIDLIYDT-PLDN--------KKLLKEELKLAKELPINHLSAY 185 (350)
T ss_pred cCCCCCHHH---HHHHHHHHHHcCCCEEEEEeecCC-CCCC--------HHHHHHHHHHHHhcCCCEEEec
Confidence 344555544 344455555555 4566666 6543 3455666677888999988764
No 126
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=49.34 E-value=63 Score=31.85 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCC--CHHHHHHHHHHHHHHHHcCCCe
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYS--SGKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s--~~~d~~~L~~K~~ql~~lGvr~ 79 (166)
.++|+.|++.|++.|.. .-|.++++|.+- ..+++..+.+.| .++|...
T Consensus 578 ~~ql~~ia~iA~kyg~~--~~iT~~Q~i~L~~i~~~~l~~v~~~L---~~~Gl~~ 627 (847)
T PRK14989 578 PEGLMAVGRIAREFNLY--TKITGSQRIGLFGAQKDDLPEIWRQL---IEAGFET 627 (847)
T ss_pred HHHHHHHHHHHHHHCCc--EEEcCCCceEeCCCCHHHHHHHHHHH---HHCCCCc
Confidence 36777777778787753 477777765443 456666665554 5556554
No 127
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=49.31 E-value=20 Score=33.12 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
-.++||++.-+++|++.-|||||
T Consensus 325 ~~v~el~~~L~~~G~~V~faIHP 347 (463)
T PF02233_consen 325 HAVAELADLLEERGVEVKFAIHP 347 (463)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-T
T ss_pred HHHHHHHHHHHhCCCEEEEEecc
Confidence 47899999999999999999999
No 128
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=48.35 E-value=64 Score=29.20 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEe-cCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHH
Q psy629 61 EVATLKRKLEQVAQFGCRGFALL-FDDIESE---MSEADKEVFQSFAHAQVSVTNEVFE 115 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~Fail-fDDi~~~---~~~~d~~~f~~~a~aq~~l~n~v~~ 115 (166)
-+.++.+-+++|+++|.|.|.|+ .=|++-. ....+.+....++..+-..+....+
T Consensus 259 vV~~~~~~l~~Ly~lGARk~vV~nlpPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~ 317 (408)
T PRK15381 259 VVEQQIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVE 317 (408)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 35566667899999999999986 4444421 1111223344455555544444433
No 129
>PRK05660 HemN family oxidoreductase; Provisional
Probab=48.28 E-value=45 Score=29.30 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=34.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHCCC-----eEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 16 AYWRDLYSVEEAEHLTGLISAAKEQGI-----DFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 16 ~~Wre~Yp~~~l~~l~~L~~~a~~~~v-----~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
..-+..++.++. .+-++.+++.|+ +|++++ ||.+ .+.+.+-++++.++|+.++.+.
T Consensus 134 ~~l~r~~~~~~~---~~ai~~~~~~G~~~v~~dli~Gl-pgqt--------~~~~~~~l~~~~~l~p~~is~y 194 (378)
T PRK05660 134 KRLGRIHGPDEA---KRAAKLAQGLGLRSFNLDLMHGL-PDQS--------LEEALDDLRQAIALNPPHLSWY 194 (378)
T ss_pred HHhCCCCCHHHH---HHHHHHHHHcCCCeEEEEeecCC-CCCC--------HHHHHHHHHHHHhcCCCeEEee
Confidence 344555655554 333444555554 445554 5432 4667778888999999998754
No 130
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=47.96 E-value=51 Score=26.33 Aligned_cols=99 Identities=26% Similarity=0.399 Sum_probs=67.6
Q ss_pred eeccCCC--hhhhhhhccCCCHHHHHHHHHHHHH--HHHCCCeEEEEecC-CCCCCCCCHHHHHHHH---HHHHHHHHcC
Q psy629 5 LYAPKDD--YKHRAYWRDLYSVEEAEHLTGLISA--AKEQGIDFYYALSP-GLDITYSSGKEVATLK---RKLEQVAQFG 76 (166)
Q Consensus 5 iYAPKdD--pyhr~~Wre~Yp~~~l~~l~~L~~~--a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~---~K~~ql~~lG 76 (166)
+|-|-++ |+||---+.-|..+-|-++.--+=+ .|..-++|+|-=.| |-+-. .+..+++.- +-|+.|-..-
T Consensus 22 ~YlPa~~~~~~~rI~Fahgf~aSALHEIaHWciAG~~RR~l~DfGYWY~PDGR~~~--qQ~~FE~VEvkPQAlEw~f~~a 99 (164)
T PF04315_consen 22 IYLPADDECPYHRIIFAHGFFASALHEIAHWCIAGPERRQLEDFGYWYCPDGRDAE--QQAEFEQVEVKPQALEWLFSVA 99 (164)
T ss_pred cccCCCCCCCceeEEeecchHHHHHHHHHHHHhccccccccccCCCCcCCCCCCHH--HHHHHHhhhhchHHHHHHHHHH
Confidence 4666665 8999999999999998888876665 57778999999999 65421 122333333 3355555533
Q ss_pred C-CeeEEecCCCCCCCCHHHHHHHhhHHHHHH
Q psy629 77 C-RGFALLFDDIESEMSEADKEVFQSFAHAQV 107 (166)
Q Consensus 77 v-r~FailfDDi~~~~~~~d~~~f~~~a~aq~ 107 (166)
+ ..|-|..|...++ +.|...|.+-...|+
T Consensus 100 ~G~~F~VS~DNL~g~--~~d~~~F~~~V~~qv 129 (164)
T PF04315_consen 100 AGFPFRVSCDNLNGD--EPDRQAFKQKVHAQV 129 (164)
T ss_pred cCCcceeeccCCCCC--CccHHHHHHHHHHHH
Confidence 3 3599999999998 446677765444443
No 131
>PLN02361 alpha-amylase
Probab=47.87 E-value=1.1e+02 Score=27.53 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEe
Q psy629 27 AEHLTGLISAAKEQGIDFYYAL 48 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~ai 48 (166)
.++|++||++|+++||+.+.=+
T Consensus 75 ~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 75 EHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEEE
Confidence 4789999999999999877643
No 132
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=47.79 E-value=95 Score=28.07 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=59.8
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.+|.+-.|-..+.+-+ ...++.++.+++-++.|++.|+.+.+...= ++ ..+.+.|++=++.+.+.|++.+.|
T Consensus 94 ~if~~tSd~h~~~~~~-~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed-----~~-rt~~~~l~~~~~~~~~~ga~~i~l- 165 (409)
T COG0119 94 HIFIATSDLHLRYKLK-KTREEVLERAVDAVEYARDHGLEVRFSAED-----AT-RTDPEFLAEVVKAAIEAGADRINL- 165 (409)
T ss_pred EEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEeec-----cc-cCCHHHHHHHHHHHHHcCCcEEEE-
Confidence 3566666555555555 888999999999999999999888873322 11 345678888888888999999874
Q ss_pred cCCCCCCCCH
Q psy629 84 FDDIESEMSE 93 (166)
Q Consensus 84 fDDi~~~~~~ 93 (166)
-|=++.-.+.
T Consensus 166 ~DTvG~~~P~ 175 (409)
T COG0119 166 PDTVGVATPN 175 (409)
T ss_pred CCCcCccCHH
Confidence 4666655553
No 133
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=47.39 E-value=80 Score=26.11 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
..+.+++++++.+.|++.|+.|+.-+.| |..+...+.+ .+..-.+...++|++...+-
T Consensus 118 ~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~---~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 118 EWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPE---LVAHAARLGAELGADIVKTP 176 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHH---HHHHHHHHHHHHCCCEEecc
Confidence 3466789999999999999999885554 4443332222 22221355667999998864
No 134
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=47.28 E-value=74 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~ 79 (166)
+.+++|++.+++.|+..+..-| +|...-..+.|..++.++.+.|.+.
T Consensus 112 ~~~~~l~~~~~~~~~~vI~S~H-----~F~~TP~~~~l~~~~~~m~~~gaDi 158 (238)
T PRK13575 112 EKHQRLITHLQQYNKEVVISHH-----NFESTPPLDELKFIFFKMQKFNPEY 158 (238)
T ss_pred HHHHHHHHHHHHcCCEEEEecC-----CCCCCCCHHHHHHHHHHHHHhCCCE
Confidence 4567778888888999888888 3433223456778999999998443
No 135
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.07 E-value=94 Score=25.83 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
++.+++-++.|.+.|.+ .+.+|||....-..++.++.+.+=+..+.+.. ...-|++-.+.
T Consensus 87 v~~~~~~i~~A~~lga~-~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~-~~v~l~lEN~~ 146 (274)
T TIGR00587 87 LDVLDEELKRCELLGIM-LYNFHPGSALKCSEEEGLDNLIESLNVVIKET-KIVTILLENMA 146 (274)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHHHhcc-CCCEEEEEeCC
Confidence 56788888888888888 67788876432223444555555555555421 12345555443
No 136
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=47.02 E-value=1.6e+02 Score=25.11 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHH--------HHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-ceEc
Q psy629 58 SGKEVATLKRKLE--------QVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPK-FMLC 125 (166)
Q Consensus 58 ~~~d~~~L~~K~~--------ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~-l~~c 125 (166)
+++.+.+++.++. .+.+.|++...+ +|+..+-++.++.+.|-.. -..++++.+.+..+..+ +.+|
T Consensus 167 ~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i-~d~~~~~lsp~~f~ef~~p--~~k~i~~~i~~~~~~~~ilh~c 240 (338)
T TIGR01464 167 EPEVLHALLNKLTDATIEYLVEQVKAGAQAVQI-FDSWAGALSPEDFEEFVLP--YLKKIIEEVKARLPNVPVILFA 240 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-ECCccccCCHHHHHHHHHH--HHHHHHHHHHHhCCCCCEEEEe
Confidence 3566777776654 345789987654 6777777787777666322 23456666665544444 5556
No 137
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=47.00 E-value=67 Score=26.71 Aligned_cols=47 Identities=11% Similarity=0.299 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~ 79 (166)
+.+++|++.+++.|+..+..-| +|...-..+.|.+.++++.++|++.
T Consensus 122 ~~~~~l~~~~~~~~~kvI~S~H-----~f~~tP~~~~l~~~~~~~~~~gaDi 168 (253)
T PRK02412 122 DVVKEMVAFAHEHGVKVVLSYH-----DFEKTPPKEEIVERLRKMESLGADI 168 (253)
T ss_pred HHHHHHHHHHHHcCCEEEEeeC-----CCCCCcCHHHHHHHHHHHHHhCCCE
Confidence 3577788888889999888887 3332222345888999999999654
No 138
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=46.95 E-value=96 Score=27.36 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCCCC-CCCCHHH-HHH-------HhhHHHHHHHHHHHHHHHcCCC-C--ceEcccccc
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDDIE-SEMSEAD-KEV-------FQSFAHAQVSVTNEVFEHLGQP-K--FMLCPTQYC 130 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDDi~-~~~~~~d-~~~-------f~~~a~aq~~l~n~v~~~l~~~-~--l~~cPt~Y~ 130 (166)
+++..=++.|+++|||.+ .+||-. ..++... +.. -..+...-++++|.+.+..+.. . +-+|...|.
T Consensus 170 ~al~~Ei~~L~~aG~~~I--QiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYL--QLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEE--EecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCC
Confidence 345566789999999985 588866 2222211 111 1122344557788888766533 2 479999888
Q ss_pred ccccC
Q psy629 131 STRAV 135 (166)
Q Consensus 131 ~~~~~ 135 (166)
+.+..
T Consensus 248 ~~~~~ 252 (368)
T PRK06520 248 STWIS 252 (368)
T ss_pred Ccccc
Confidence 66543
No 139
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.80 E-value=1.3e+02 Score=24.31 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCC---CCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDI---TYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~---~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
.+.|+++++.|.+.||.+.+=-+...+. ...+.++...|+ .++|-..++|.||=-
T Consensus 122 ~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li------~~v~~~~~~i~~D~~ 179 (254)
T TIGR03234 122 VENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVI------DDVGRENLKLQYDLY 179 (254)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHH------HHhCCCCEeEeeehh
Confidence 3678888888888888866643211111 112334333333 334667788888753
No 140
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=46.69 E-value=65 Score=26.18 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeE
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFA 81 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa 81 (166)
.+++|++.+++.+++.+..-| +|...-+.+.|.+.++++.++|++..=
T Consensus 106 ~~~~l~~~~~~~~~kvI~S~H-----~f~~tp~~~~l~~~~~~~~~~gaDivK 153 (228)
T TIGR01093 106 AVKELINIAKKGGTKIIMSYH-----DFQKTPSWEEIVERLEKALSYGADIVK 153 (228)
T ss_pred HHHHHHHHHHHCCCEEEEecc-----CCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 466777778888888888887 333222335588999999999976543
No 141
>PRK08005 epimerase; Validated
Probab=46.53 E-value=20 Score=29.43 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCC--------------------CCCHHHHHHHHHHHHHHHHcC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDIT--------------------YSSGKEVATLKRKLEQVAQFG 76 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~--------------------~s~~~d~~~L~~K~~ql~~lG 76 (166)
..+.++++..+++|++.+.||.|+-++. |..+.=+.....|+.++.++-
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~ 161 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF 161 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc
Confidence 4577889999999999999999985431 333334555666777776654
No 142
>PRK10426 alpha-glucosidase; Provisional
Probab=46.48 E-value=2.1e+02 Score=27.25 Aligned_cols=101 Identities=18% Similarity=0.365 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC-----------------------------------CCCCCHHHHHHHHHHHH-HH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD-----------------------------------ITYSSGKEVATLKRKLE-QV 72 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~-----------------------------------~~~s~~~d~~~L~~K~~-ql 72 (166)
..+++++.-++.|++++.-|.|+.. ++|++++..+=..+++. .+
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~ 349 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNM 349 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999632 23666666776777774 78
Q ss_pred HHcCCCeeEEecCCCCCCCCH-------HHHH-HHhhHHHHHHHHHHHHHHHcCC--CCceEcccccccc
Q psy629 73 AQFGCRGFALLFDDIESEMSE-------ADKE-VFQSFAHAQVSVTNEVFEHLGQ--PKFMLCPTQYCST 132 (166)
Q Consensus 73 ~~lGvr~FailfDDi~~~~~~-------~d~~-~f~~~a~aq~~l~n~v~~~l~~--~~l~~cPt~Y~~~ 132 (166)
.++||+.|-. |.+..++. .+.+ .=...+...++.+-+..+..+. .+++++=..|.+.
T Consensus 350 ~~~Gvdg~w~---D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGs 416 (635)
T PRK10426 350 IGLGCSGWMA---DFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTGS 416 (635)
T ss_pred hhcCCCEEee---eCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCCc
Confidence 9999999853 32221110 0111 1112344455555454444433 4688887777654
No 143
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=46.47 E-value=18 Score=32.20 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
..+-++||+++||+.|++|++=.||
T Consensus 126 krDiv~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 126 KRDLVGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred CcchHHHHHHHHHHcCCeEEEEcCH
Confidence 5688999999999999999999998
No 144
>PRK06740 histidinol-phosphatase; Validated
Probab=46.28 E-value=88 Score=27.21 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHCCCeEEE
Q psy629 28 EHLTGLISAAKEQGIDFYY 46 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~ 46 (166)
..+.++++++.++|+-+=+
T Consensus 239 ~~~~~I~~a~~~~g~~lEI 257 (331)
T PRK06740 239 SYYKEIARALVETNTATEI 257 (331)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 3555556666666655533
No 145
>PLN02923 xylose isomerase
Probab=46.27 E-value=2.4e+02 Score=26.23 Aligned_cols=99 Identities=15% Similarity=0.251 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEecCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCc------eEcccccccc
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLFDDIE--SEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKF------MLCPTQYCST 132 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~FailfDDi~--~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l------~~cPt~Y~~~ 132 (166)
.+.++-+-|+-+.+||+.-|+ |-|.+ ... ...+|...++.+ .+..+.+..+..|.+-| ..=|.+=.+.
T Consensus 121 A~~k~daaFEf~~kLG~~y~c--FHD~Dl~Peg-~sl~E~~~nld~-ivd~~ke~~~~TGikllwgTaNlFshPrf~~GA 196 (478)
T PLN02923 121 AKRRMRANFEFLKKLGVDRWC--FHDRDIAPDG-KTLEESNANLDE-VVALAKELQEGTKIRPLWGTAQLFKHPRYMHGA 196 (478)
T ss_pred HHHHHHHHHHHHHHhCCCeEc--cCccccCCCC-CCHHHHHhhHHH-HHHHHHHHhHhhCceeeeeccccccCccccCCc
Confidence 345555667889999999998 55555 332 223333333322 23333333333343322 2234444444
Q ss_pred ccCCCCCChhH-----HH--HHhhccCCCceEEeeCCC
Q psy629 133 RAVPNVKNSEY-----LN--TLGSKLAKEIDIMWTGPK 163 (166)
Q Consensus 133 ~~~~~~~~~~Y-----l~--~l~~~L~~~i~i~WTG~~ 163 (166)
..+|+..--.| .+ +++..|.-+-.|||-|..
T Consensus 197 aTspd~dV~ayAaaqvk~ald~t~eLGgenYVfWGGRE 234 (478)
T PLN02923 197 ATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGRE 234 (478)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCcc
Confidence 44443311111 11 356788999999999964
No 146
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=45.89 E-value=19 Score=27.36 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=20.7
Q ss_pred hhHHHHHhhccCCCceEEeeCCCCC
Q psy629 141 SEYLNTLGSKLAKEIDIMWTGPKVP 165 (166)
Q Consensus 141 ~~Yl~~l~~~L~~~i~i~WTG~~V~ 165 (166)
.=++...+..++-+|.||||+.+|.
T Consensus 22 ~f~~A~~a~smg~dV~iF~t~dG~~ 46 (120)
T COG2044 22 PFVMATAAASMGYDVTIFFTMDGVT 46 (120)
T ss_pred HHHHHHHHHhCCCceEEEEEeccce
Confidence 3457777889999999999999874
No 147
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.67 E-value=1.4e+02 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=28.3
Q ss_pred HHHHHHHCCCeEEEEecC--CCCC---CCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 33 LISAAKEQGIDFYYALSP--GLDI---TYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 33 L~~~a~~~~v~Fv~aisP--G~~~---~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
.++.+++.|+.+|.--++ +..+ ..++.+.-..+ .+.|.+.|.+.++++...-
T Consensus 71 ~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~---~~~l~~~g~~~i~~l~~~~ 127 (268)
T cd06289 71 LLKRLAESGIPVVLVAREVAGAPFDYVGPDNAAGARLA---TEHLISLGHRRIAFIGGLE 127 (268)
T ss_pred HHHHHHhcCCCEEEEeccCCCCCCCEEeecchHHHHHH---HHHHHHCCCCCEEEecCCc
Confidence 455566778777765443 2222 22222222222 2356778999999886543
No 148
>PRK15108 biotin synthase; Provisional
Probab=45.66 E-value=47 Score=29.03 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCCeeEEecCCC
Q psy629 67 RKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 67 ~K~~ql~~lGvr~FailfDDi 87 (166)
..++.|.++|++.+.+.+|=.
T Consensus 137 e~l~~LkeAGld~~n~~leT~ 157 (345)
T PRK15108 137 SQAQRLANAGLDYYNHNLDTS 157 (345)
T ss_pred HHHHHHHHcCCCEEeeccccC
Confidence 346677899999999877663
No 149
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=45.52 E-value=47 Score=28.93 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCC--CHHHHHHHhhHHHHHHHHHHHHHHHcCC--CCceEccc
Q psy629 58 SGKEVATLKRKLEQVAQFGCRGFALLFDDIESEM--SEADKEVFQSFAHAQVSVTNEVFEHLGQ--PKFMLCPT 127 (166)
Q Consensus 58 ~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~--~~~d~~~f~~~a~aq~~l~n~v~~~l~~--~~l~~cPt 127 (166)
+++=.+.+..++++|.++|+. |+++|=|+.-- ...+++.=.+.+...+..++.|.++... +.|.+.|.
T Consensus 121 ~~eWkdii~~~l~rL~d~Gfd--GvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~q 192 (300)
T COG2342 121 EPEWKDIIRSYLDRLIDQGFD--GVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIPQ 192 (300)
T ss_pred CHHHHHHHHHHHHHHHHccCc--eEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 345578899999999999998 67788877541 1112112224566777777887776643 33666664
No 150
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=45.24 E-value=32 Score=30.22 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=45.7
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCC--CCCCHHHHHHHHHHHHH
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDI--TYSSGKEVATLKRKLEQ 71 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~--~~s~~~d~~~L~~K~~q 71 (166)
+-|+||++-++.-+=+-|. .=..++|+.|++.|++.|.. ..-|+..+++ .+-+.+++..+.+.|+.
T Consensus 21 ~~~~~~~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g-~i~lTtrQnI~l~~I~~edl~~i~~~L~~ 88 (341)
T TIGR02066 21 KHVAESGDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDG-YLRWTIRNNVEFLVSDESKIQPLIDELEE 88 (341)
T ss_pred EEECCCCCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCC-eEEEeccCCEEEecCCHHHHHHHHHHHHh
Confidence 4688888888877767666 55556777788888887754 3445565554 44467888888887754
No 151
>PLN02433 uroporphyrinogen decarboxylase
Probab=45.10 E-value=2e+02 Score=24.77 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHH--------HHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHc
Q psy629 58 SGKEVATLKRKLE--------QVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117 (166)
Q Consensus 58 ~~~d~~~L~~K~~--------ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l 117 (166)
+.+.+.+|++++. ...+.|+.... .||...+-++.++.+.|.-. -..++++.+.+..
T Consensus 166 ~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~-i~d~~~~~lsp~~f~ef~~P--~~k~i~~~i~~~~ 230 (345)
T PLN02433 166 APEVLHALLDKLTDAVIEYVDYQIDAGAQVVQ-IFDSWAGHLSPVDFEEFSKP--YLEKIVDEVKARH 230 (345)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE-EecCccccCCHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 4566777777765 34578997555 48888788888877766432 2345666665543
No 152
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=45.08 E-value=93 Score=25.81 Aligned_cols=53 Identities=9% Similarity=0.165 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEec--CCCCCCCC---CHHHHHHHHHHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALS--PGLDITYS---SGKEVATLKRKLEQV 72 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais--PG~~~~~s---~~~d~~~L~~K~~ql 72 (166)
..-|.++++-|++..+.+++.+.+.++..| ||...... ..+.+..|++|+...
T Consensus 192 ~~~~~~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~~~ 249 (296)
T cd00842 192 ETDPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRYSDT 249 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHHHHh
Confidence 345688999999999999988766555445 46543332 245677788887643
No 153
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=44.75 E-value=49 Score=31.22 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC--CCCCCCCCH
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP--GLDITYSSG 59 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP--G~~~~~s~~ 59 (166)
|..+-.|.+.|++.| |||+|-| |..+.=+|+
T Consensus 93 lkymlk~me~c~a~g--fvygiipekgkpvsg~sd 125 (599)
T PLN03109 93 LKYMLKLMEVCKARG--FVYGIIPEKGKPVSGASD 125 (599)
T ss_pred HHHHHHHHHHHhhcc--eeEEeccCCCCCCCCCch
Confidence 566778899999999 9999999 666655553
No 154
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=44.72 E-value=1.5e+02 Score=23.20 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=28.4
Q ss_pred HHHHHHCCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 34 ISAAKEQGIDFYYALSP--GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisP--G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
.+.+++.|+.++..-+. ...+.+-..++.+....=.+.|.+.|.+.++++....
T Consensus 71 ~~~l~~~~iPvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~ 126 (268)
T cd06273 71 LDLLARRGVPYVATWNYSPDSPYPCVGFDNREAGRLAARHLIALGHRRIAMIFGPT 126 (268)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeccc
Confidence 34556677877764332 1111111111233333334455667999999997544
No 155
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.58 E-value=2.1e+02 Score=24.69 Aligned_cols=127 Identities=24% Similarity=0.291 Sum_probs=76.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCCeE-EEEecCCCCCCCCC------HHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCC
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGIDF-YYALSPGLDITYSS------GKEVATLKRKLEQVAQFGCRGFALLFDDIESEM 91 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v~F-v~aisPG~~~~~s~------~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~ 91 (166)
|-.|+++|. -.|+++..+.||++ ..+||----+.|.| ++.++.+.+-++--++||+|-+.|.-=|+-+..
T Consensus 48 RLDWs~~er---~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~ 124 (287)
T COG3623 48 RLDWSKEER---LALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE 124 (287)
T ss_pred hcCCCHHHH---HHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc
Confidence 334455554 45677778899887 24444433455554 245666666677788999999999999999665
Q ss_pred -CHHHHHHHhh--------HHHHHHH---------HHHHHHHHcC------CCCceEccccccccccCCCCCChhHHHHH
Q psy629 92 -SEADKEVFQS--------FAHAQVS---------VTNEVFEHLG------QPKFMLCPTQYCSTRAVPNVKNSEYLNTL 147 (166)
Q Consensus 92 -~~~d~~~f~~--------~a~aq~~---------l~n~v~~~l~------~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l 147 (166)
.++-+.+|.. .+.+|+. ++|.|.+++. +|-|.+-|-.=+-+. -+.++..+|
T Consensus 125 ~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~sP~f~vYPDiGNlsa-----w~ndv~~El 199 (287)
T COG3623 125 ADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTPFMNSISKWLKYDKYINSPWFTVYPDIGNLSA-----WNNDVQSEL 199 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccHHHHHHHHHHHHHHHhCCCcEEecCCcccHhh-----hhhhHHHHH
Confidence 4445666753 2345544 4677776653 333555454322221 145677777
Q ss_pred hhccCC
Q psy629 148 GSKLAK 153 (166)
Q Consensus 148 ~~~L~~ 153 (166)
.-+.+.
T Consensus 200 ~lG~~~ 205 (287)
T COG3623 200 QLGIDK 205 (287)
T ss_pred HcCcCc
Confidence 655544
No 156
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=44.43 E-value=1.5e+02 Score=22.91 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC--CHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYS--SGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s--~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.++.++.|+++++.+++.+++|+ |+.|--+.-. +...+..+.+.+.++.+.++..+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~d~i--~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 83 (223)
T cd00840 23 REDQFEAFEEIVELAIEEKVDFV--LIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIA 83 (223)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEE--EECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEec
Confidence 45677889999999999999974 5566544332 34556777777777776677776654
No 157
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=44.00 E-value=2e+02 Score=24.39 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEec-CC--------------------------CCCCCCCHHHHHHHHHHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALS-PG--------------------------LDITYSSGKEVATLKRKLEQVA 73 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais-PG--------------------------~~~~~s~~~d~~~L~~K~~ql~ 73 (166)
.|+. +++++|++.|++.||+.+=-|- || ..++.++++.++-|..=|+++.
T Consensus 68 ~yT~---~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~ 144 (303)
T cd02742 68 FYTY---AQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIA 144 (303)
T ss_pred eECH---HHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHH
Confidence 4554 4678899999999999885542 22 0245556677777777777777
Q ss_pred HcC-CCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcC
Q psy629 74 QFG-CRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLG 118 (166)
Q Consensus 74 ~lG-vr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~ 118 (166)
++= -+.|=|-.|.+..... ....++..+|++.+.+.
T Consensus 145 ~lf~~~~iHiGgDE~~~~~~---------~~~l~~~f~~~~~~~v~ 181 (303)
T cd02742 145 ELFPDRYLHIGGDEAHFKQD---------RKHLMSQFIQRVLDIVK 181 (303)
T ss_pred HhCCCCeEEecceecCCCCC---------HHHHHHHHHHHHHHHHH
Confidence 754 4557777888875421 23467777888776654
No 158
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=43.82 E-value=16 Score=25.87 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=24.9
Q ss_pred eccCCChhhhhhhccCCCHHH------HHHHHHHHHHHHHC
Q psy629 6 YAPKDDYKHRAYWRDLYSVEE------AEHLTGLISAAKEQ 40 (166)
Q Consensus 6 YAPKdDpyhr~~Wre~Yp~~~------l~~l~~L~~~a~~~ 40 (166)
+-.|.=|-+..+|.+.||++. +.++++|-++-|++
T Consensus 39 hiaKsMPpL~kHWN~~~PeaK~~ik~li~~Ik~lNe~~r~~ 79 (82)
T PF10835_consen 39 HIAKSMPPLAKHWNGTYPEAKEEIKELIEEIKQLNEAHRAN 79 (82)
T ss_pred HHHHhCcHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888899999999986 35666666655544
No 159
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=43.63 E-value=75 Score=29.25 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=33.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCC-----eEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGI-----DFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v-----~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
...++.+ ++.+.++.+++.|+ +|++++ ||.+ .+.+.+=++.+.++|+.+..+..
T Consensus 299 gR~ht~e---~v~~ai~~ar~~Gf~~In~DLI~GL-PgEt--------~ed~~~tl~~l~~L~pd~isv~~ 357 (488)
T PRK08207 299 GRHHTVE---DIIEKFHLAREMGFDNINMDLIIGL-PGEG--------LEEVKHTLEEIEKLNPESLTVHT 357 (488)
T ss_pred CCCCCHH---HHHHHHHHHHhCCCCeEEEEEEeCC-CCCC--------HHHHHHHHHHHHhcCcCEEEEEe
Confidence 3345444 44556666777776 555555 5543 34555667778889999888763
No 160
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=43.60 E-value=2.4e+02 Score=25.27 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=62.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCC------------------------------CCCCCCHHHHHHHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGL------------------------------DITYSSGKEVATLKRKL 69 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~------------------------------~~~~s~~~d~~~L~~K~ 69 (166)
+.+|. -|+.|++..++.|++|+.=+.|++ -+++++++-.+-|.+++
T Consensus 100 ~kFP~----Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i 175 (394)
T PF02065_consen 100 KKFPN----GLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVI 175 (394)
T ss_dssp TTSTT----HHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHH
T ss_pred hhhCC----cHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHH
Confidence 45564 599999999999999999885531 04566677888899999
Q ss_pred HH-HHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHH----HHHHHHHHcCCCCceEcccc
Q psy629 70 EQ-VAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVS----VTNEVFEHLGQPKFMLCPTQ 128 (166)
Q Consensus 70 ~q-l~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~----l~n~v~~~l~~~~l~~cPt~ 128 (166)
.+ +.+-||+-|=+=|..--......... ...+.++. ++.++.+..+..-+--|...
T Consensus 176 ~~ll~~~gidYiK~D~n~~~~~~~~~~~~---~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 176 DRLLREWGIDYIKWDFNRDITEAGSPSLP---EGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp HHHHHHTT-SEEEEE-TS-TTS-SSTTS----GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred HHHHHhcCCCEEEeccccCCCCCCCCCch---HHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 87 57899999987665422221111000 22334443 66666666665556667765
No 161
>PRK06852 aldolase; Validated
Probab=43.56 E-value=1e+02 Score=26.86 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
.+.+++|.+++++|++.|+-.+.-+-| |..+. ++.+.+.+..=-..-.+||.+..=+-.
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaaELGADIVKv~y 209 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAACLGADFVKVNY 209 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHHHHcCCEEEecC
Confidence 567889999999999999998876777 77763 333444455555677889987766554
No 162
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.32 E-value=1.4e+02 Score=22.44 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCC------CC----HHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITY------SS----GKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~------s~----~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
...+.++.+.+++.||..+. ++|...... ++ .+.++.+.+-++....+|++...+..-
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIAS-LHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred hHHHHHHHHHHHHcCCeEEE-EecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 56788888999999999443 344222111 11 234788888889999999999988855
No 163
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=43.14 E-value=2.1e+02 Score=24.49 Aligned_cols=104 Identities=15% Similarity=0.275 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC------------------------------------CCCCCHHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD------------------------------------ITYSSGKEVATLKRKLEQV 72 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~------------------------------------~~~s~~~d~~~L~~K~~ql 72 (166)
..++|++.-++.|++.+.-|.|+.. ++|++++..+=...+++.+
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 72 GLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 4778889999999999999999742 2334455666667888876
Q ss_pred -HHcCCCeeEEecCCCC-CCC---CHH-HHHHHhhHHHHHHHHHHHHHHHcC-C-CCceEcccccccc
Q psy629 73 -AQFGCRGFALLFDDIE-SEM---SEA-DKEVFQSFAHAQVSVTNEVFEHLG-Q-PKFMLCPTQYCST 132 (166)
Q Consensus 73 -~~lGvr~FailfDDi~-~~~---~~~-d~~~f~~~a~aq~~l~n~v~~~l~-~-~~l~~cPt~Y~~~ 132 (166)
.++||+.|-+=+..-- .+. ... -.+.-...+...++.+-+..+..+ . .+++++=+.|.++
T Consensus 152 ~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gs 219 (317)
T cd06594 152 LLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGS 219 (317)
T ss_pred hhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEccccccc
Confidence 8899999854332210 000 000 011111234445555555444443 3 3588887777644
No 164
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=43.13 E-value=1.2e+02 Score=25.53 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=50.4
Q ss_pred eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
++.|..|.....+.. .+.++...++...++.+++.|++|.+.+.=.. - .+.+.+++-.+.+.++|+..+.+.
T Consensus 88 ~~~~~s~~~~~~~~~-~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~---~---~~~~~~~~~~d~~~~~g~~~i~~~ 159 (344)
T TIGR02146 88 IFFGTSKLLRIAEHR-SDAKSILESARETIEYAKSAGLEVRFSAEDTF---R---SELADLLSIYETVGVFGVDRVGIA 159 (344)
T ss_pred EEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCC---C---CCHHHHHHHHHHHHHCCCCEEEEc
Confidence 455666555555555 45667788999999999999999888765321 1 223556666678888999998754
No 165
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=42.98 E-value=24 Score=32.00 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCeEEEEecC
Q psy629 29 HLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisP 50 (166)
-++|+++.-+++||+.-|||||
T Consensus 327 ~v~E~~~~L~~~Gv~VrfaIHP 348 (463)
T COG1282 327 PVAEITEKLRARGVNVRFAIHP 348 (463)
T ss_pred HHHHHHHHHHhcCCeeeEeecc
Confidence 5899999999999999999999
No 166
>KOG0369|consensus
Probab=42.69 E-value=51 Score=32.52 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=46.1
Q ss_pred eeccCCC-hhhhhhhccCCCH-------HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy629 5 LYAPKDD-YKHRAYWRDLYSV-------EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFG 76 (166)
Q Consensus 5 iYAPKdD-pyhr~~Wre~Yp~-------~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lG 76 (166)
||+-.|- .-||.+=.|.|+- .---.+.++++.|++++|++ +|||-.+- |...|+.+ ...++|
T Consensus 62 iYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vda---vHPGYGFL-SErsdFA~------av~~AG 131 (1176)
T KOG0369|consen 62 IYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDA---VHPGYGFL-SERSDFAQ------AVQDAG 131 (1176)
T ss_pred EEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCe---ecCCcccc-ccchHHHH------HHHhcC
Confidence 4444332 4578887777743 33457899999999999996 69998753 33355543 456889
Q ss_pred CCeeE
Q psy629 77 CRGFA 81 (166)
Q Consensus 77 vr~Fa 81 (166)
+|..+
T Consensus 132 i~fiG 136 (1176)
T KOG0369|consen 132 IRFIG 136 (1176)
T ss_pred ceEeC
Confidence 98876
No 167
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=42.38 E-value=66 Score=27.91 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
|.+++++|-+.+...-..++.|.+-.+|. +++ ..+++.|.++||+.++|-++.++.
T Consensus 66 ~~~~l~~ll~~i~~~~~~~~eitiE~nP~-~~~----------~e~l~~l~~~GvnRiSiGvQS~~~ 121 (350)
T PRK08446 66 SAKFYEPIFEIISPYLSKDCEITTEANPN-SAT----------KAWLKGMKNLGVNRISFGVQSFNE 121 (350)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCC----------HHHHHHHHHcCCCEEEEecccCCH
Confidence 33344444333333323445555555552 111 267888899999999999888764
No 168
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=42.37 E-value=27 Score=24.76 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=33.1
Q ss_pred eeeccCCCh---hhhhhhcc-----CCCHHHHHHHHHHHHHHHHCCCeE
Q psy629 4 YLYAPKDDY---KHRAYWRD-----LYSVEEAEHLTGLISAAKEQGIDF 44 (166)
Q Consensus 4 YiYAPKdDp---yhr~~Wre-----~Yp~~~l~~l~~L~~~a~~~~v~F 44 (166)
||=-||.|- .|..+|-. .-|++-++.|..|-+.|++|||.|
T Consensus 20 YIG~P~~~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 20 YIGEPKPDHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred EeCCCCCCCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCH
Confidence 666787773 46788854 468888999999999999999976
No 169
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=42.07 E-value=2.9e+02 Score=25.71 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS 92 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~ 92 (166)
.+.|-++++.|++.|.+=|=--.=| +++.++ ..=..+|.++|+....+.||++.....
T Consensus 124 r~DL~eiv~~a~e~g~~hVqinTnG--irlA~~------~~~~~~l~~ag~~tvYlsFDG~~e~~~ 181 (475)
T COG1964 124 RDDLIEIIKIAREEGYDHVQLNTNG--IRLAFD------PEYVKKLREAGVNTVYLSFDGVTPKTN 181 (475)
T ss_pred hhhHHHHHHHHhhcCccEEEEccCc--eeeccC------HHHHHHHHhcCCcEEEEecCCCCCCch
Confidence 3778888888888886433211112 222221 333567889999999999999996653
No 170
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=41.70 E-value=98 Score=27.83 Aligned_cols=53 Identities=26% Similarity=0.470 Sum_probs=32.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCC-----eEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGI-----DFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v-----~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
+..++.+ +..+-++.+++.|+ +|++++ ||.+ .+.+.+=++.+.++|+.++.+.
T Consensus 181 ~r~~~~~---~~~~ai~~l~~~G~~~v~~dli~Gl-Pgqt--------~e~~~~tl~~~~~l~~~~is~y 238 (455)
T TIGR00538 181 NRIQPEE---MIFELMNHAREAGFTSINIDLIYGL-PKQT--------KESFAKTLEKVAELNPDRLAVF 238 (455)
T ss_pred CCCCCHH---HHHHHHHHHHhcCCCcEEEeEEeeC-CCCC--------HHHHHHHHHHHHhcCCCEEEEe
Confidence 3345543 34455556666554 556665 6643 3556666777888999987765
No 171
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=41.54 E-value=1.5e+02 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHC-CCeEEEEecCCCCCCCCCHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQ-GIDFYYALSPGLDITYSSGKEVATLKRKL 69 (166)
Q Consensus 29 ~l~~L~~~a~~~-~v~Fv~aisPG~~~~~s~~~d~~~L~~K~ 69 (166)
.+++..+.++.. +|...+||||-.--.. .+++++.|.+.+
T Consensus 45 ~~~~~~~l~~~~~~v~~~~GiHP~~~~~~-~~~~~~~l~~~l 85 (258)
T PRK11449 45 NFARVLALAERYQPLYAALGLHPGMLEKH-SDVSLDQLQQAL 85 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEeeCcCccccC-CHHHHHHHHHHH
Confidence 344444445443 6888999999432111 234555554444
No 172
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=41.30 E-value=1.7e+02 Score=26.08 Aligned_cols=51 Identities=25% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHCCCeEEEEecCCCCC-----CCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 38 KEQGIDFYYALSPGLDI-----TYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 38 ~~~~v~Fv~aisPG~~~-----~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
...++.|.|-=.+..++ .+++ .-.+++.++..++.+.||+.=.+--++|..
T Consensus 157 ~r~~~qf~W~N~gy~~FDdfLa~Lss-~kRk~IRrERr~v~~~Gi~~~~l~G~~i~~ 212 (370)
T PF04339_consen 157 SRQGVQFHWHNRGYRSFDDFLAALSS-RKRKNIRRERRKVAEQGIRIRTLTGDEITD 212 (370)
T ss_pred eecCCceEEecCCCCCHHHHHHHhch-hhHHHHHHHHHHHHHcCCEEEEEeCCCCCH
Confidence 34455555543222222 2333 457889999999999999998888888854
No 173
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=41.21 E-value=98 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=26.8
Q ss_pred CCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEeeCC
Q psy629 119 QPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGP 162 (166)
Q Consensus 119 ~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WTG~ 162 (166)
.+.-+||........ --.++.++|-.+|.+|.|+=-|.
T Consensus 68 ~pdaii~~~~~~a~~------~~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 68 RPDAIICSNDRLALG------VLRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp SSSEEEESSHHHHHH------HHHHHHHTTSCTTTTSEEEEESS
T ss_pred CCcEEEEcCHHHHHH------HHHHHHHcCCcccccccEEEecC
Confidence 345788876665443 25688888888899999876553
No 174
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=41.10 E-value=1.1e+02 Score=24.65 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEe--cCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYAL--SPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~ai--sPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
+...+.+++|++.|.+.||.+...- |||..++.. .. -++.+.+.+-...++.+|=
T Consensus 122 ~~~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~~~-~~-------~~~~~~~~~~~~v~~~lD~ 178 (274)
T COG1082 122 ERWAEALEELAEIAEELGIGLALENHHHPGNVVETG-AD-------ALDLLREVDSPNVGLLLDT 178 (274)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecCCccceeecC-HH-------HHHHHHhcCCCceEEEEec
Confidence 6678999999999999999888886 666555432 22 2344455555566666654
No 175
>PRK03705 glycogen debranching enzyme; Provisional
Probab=41.06 E-value=1.4e+02 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEec
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALS 49 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~ais 49 (166)
.+++||+||++|+++||+.+.=+-
T Consensus 240 ~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 240 ALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEc
Confidence 478999999999999998776543
No 176
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.94 E-value=80 Score=28.58 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=38.4
Q ss_pred HHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 33 LISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 33 L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
|.+..+...+.+.+|.-| |-++.... -..+.|+.++.++|++-..|+-|=-
T Consensus 24 l~~ll~~~~~~~Y~GfDPTa~slHlGh----lv~l~kL~~fQ~aGh~~ivLigd~t 75 (401)
T COG0162 24 LRKLLEEGPLRVYIGFDPTAPSLHLGH----LVPLMKLRRFQDAGHKPIVLIGDAT 75 (401)
T ss_pred HHHHHhcCCceEEEeeCCCCCccchhh----HHHHHHHHHHHHCCCeEEEEecccc
Confidence 333333339999999999 65766543 5678899999999999999887653
No 177
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.71 E-value=60 Score=26.64 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=37.2
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 44 FYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 44 Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
+|..-+| +|+.|-...++.++-++.+.+.++|+.-+||..|.+.
T Consensus 36 ~VLff~P-~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~f 79 (194)
T COG0450 36 VVLFFYP-ADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVF 79 (194)
T ss_pred EEEEecc-CCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHH
Confidence 4555566 7887777888999999999999999999999999865
No 178
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.23 E-value=20 Score=29.08 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDI 54 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~ 54 (166)
..+.++++..++.|++.+.||.|+..+
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~ 118 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPV 118 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-G
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 567788999999999999999998654
No 179
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.12 E-value=1.8e+02 Score=22.72 Aligned_cols=51 Identities=8% Similarity=-0.079 Sum_probs=27.0
Q ss_pred HHCCCeEEEEec--CCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 38 KEQGIDFYYALS--PGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 38 ~~~~v~Fv~ais--PG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
...|+.++.-=. ++..+.+-...+.+.-..=.+.|.+.|.+.++++-.+..
T Consensus 75 ~~~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~~~~ 127 (269)
T cd06288 75 ELLSVPTVLLNCYDADGALPSVVPDEEQGGYDATRHLLAAGHRRIAFINGEPW 127 (269)
T ss_pred HhcCCCEEEEecccCCCCCCeEEEccHHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence 446777765322 222222111112233334445667789999999976654
No 180
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=39.67 E-value=1.7e+02 Score=25.24 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecC----------CCC-CC-CCC-----HHHHHHHHHHHHHHHH--cCCCeeEEecCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSP----------GLD-IT-YSS-----GKEVATLKRKLEQVAQ--FGCRGFALLFDDIE 88 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisP----------G~~-~~-~s~-----~~d~~~L~~K~~ql~~--lGvr~FailfDDi~ 88 (166)
..++.+.+.|++.|+.-++-..- |.. +. ++. ++++..+++.++|+.+ ++...++...=..+
T Consensus 45 ~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~FD 124 (297)
T cd02169 45 KIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFKELANASDEAVLLENGKPGIEDYLKNLPKPDQPGKKIAAIVMNAN 124 (297)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCEEecccCCeeeEecCCchHHHHHHHHHHhhccCCCceEEEEecCC
Confidence 56888999999999976554432 110 11 222 4578889999999965 88888777766665
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccc
Q psy629 89 SEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPT 127 (166)
Q Consensus 89 ~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt 127 (166)
..+. .|..++++..+......+.++|+
T Consensus 125 PiH~------------GHl~ii~~a~~~~d~~~V~i~~~ 151 (297)
T cd02169 125 PFTL------------GHRYLVEKAAAENDWVHLFVVSE 151 (297)
T ss_pred CCch------------HHHHHHHHHHhhCCeEEEEEEcC
Confidence 5543 68899999998877767788886
No 181
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=39.63 E-value=1.5e+02 Score=28.54 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEec
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALS 49 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~ais 49 (166)
.+++||+||++|+++||+.+.=+-
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 467999999999999998776543
No 182
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=39.59 E-value=2.5e+02 Score=24.17 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=44.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------------------------------CCCCCHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD-------------------------------------ITYSSGKEV 62 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~-------------------------------------~~~s~~~d~ 62 (166)
+.|| ..++|++.-++.|++++.-++|... ++|++++..
T Consensus 61 ~~fP-----dp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~ 135 (339)
T cd06604 61 ERFP-----DPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVR 135 (339)
T ss_pred ccCC-----CHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHH
Confidence 3666 3578888888899999877777432 355566666
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCC
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDD 86 (166)
+=..+.++++.+.||+.|-+=+-+
T Consensus 136 ~ww~~~~~~~~~~Gvdg~w~D~~E 159 (339)
T cd06604 136 EWWGSLYKKFVDLGVDGIWNDMNE 159 (339)
T ss_pred HHHHHHHHHHhhCCCceEeecCCC
Confidence 667778888899999988754433
No 183
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=39.30 E-value=2.3e+02 Score=26.06 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=43.7
Q ss_pred CChhhhhhhc-cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHH---HcCCCeeEEe
Q psy629 10 DDYKHRAYWR-DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVA---QFGCRGFALL 83 (166)
Q Consensus 10 dDpyhr~~Wr-e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~---~lGvr~Fail 83 (166)
-||-.|.+|. .+.+..-++.++.|++++-+-+...|+ =||.+ ..++++.-++-|.++. -=+|.+.||-
T Consensus 149 t~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVl--cPGiN----Dg~~L~~Ti~dL~~~~~~~~P~v~S~avV 220 (433)
T TIGR03279 149 TEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVV--CPGIN----DGKHLERTLRDLAQFHDGDWPTVLSVAVV 220 (433)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEE--cCCcC----CHHHHHHHHHHHHhhcccCCCceeEEEEE
Confidence 3899999987 676777778888887765444444443 47765 2455666666555552 2347777764
No 184
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.09 E-value=17 Score=29.88 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
..+.++++..++.|++.+.+|.|+..
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp 118 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATP 118 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 46788899999999999999999754
No 185
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=39.03 E-value=1.4e+02 Score=24.28 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCeEEEEecCC---CCCC---------------------CC---CHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 31 TGLISAAKEQGIDFYYALSPG---LDIT---------------------YS---SGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 31 ~~L~~~a~~~~v~Fv~aisPG---~~~~---------------------~s---~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.++.+..+++||.+|++-+|+ +... |. ++++++.+.+++.++.+.|-+.+.++
T Consensus 132 ~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 132 EEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp HHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 466778889999999999997 3110 11 46889999999999999887777766
Q ss_pred cCCCCCC
Q psy629 84 FDDIESE 90 (166)
Q Consensus 84 fDDi~~~ 90 (166)
-.|.++.
T Consensus 212 nN~~~g~ 218 (230)
T PF01904_consen 212 NNDYEGY 218 (230)
T ss_dssp -SBCCCH
T ss_pred eCCccch
Confidence 6666664
No 186
>PRK10425 DNase TatD; Provisional
Probab=39.00 E-value=1.4e+02 Score=24.97 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHC-CCeEEEEecCC
Q psy629 29 HLTGLISAAKEQ-GIDFYYALSPG 51 (166)
Q Consensus 29 ~l~~L~~~a~~~-~v~Fv~aisPG 51 (166)
.+.+..+.++.. +|...+||||-
T Consensus 41 ~~~~~~~l~~~~~~v~~~~GiHP~ 64 (258)
T PRK10425 41 ESQQAQKLARQYPSCWSTAGVHPH 64 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEEeCcC
Confidence 334444444443 58888999993
No 187
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=38.76 E-value=31 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
..+.+.++..+++|++.+.+|.|+..
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~ 122 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATP 122 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCC
Confidence 45778889999999999999999854
No 188
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.54 E-value=2.6e+02 Score=24.11 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=61.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEec-CC-----------C------------------CCCCCCHHHHHHHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALS-PG-----------L------------------DITYSSGKEVATLKRKL 69 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais-PG-----------~------------------~~~~s~~~d~~~L~~K~ 69 (166)
..|+.+ ++++|++.|++.||+.+=-|- || + .++-++++-++-+.+=+
T Consensus 63 ~~yT~~---di~elv~yA~~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~ 139 (311)
T cd06570 63 LYYTQE---QIREVVAYARDRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLF 139 (311)
T ss_pred CccCHH---HHHHHHHHHHHcCCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHH
Confidence 346554 578899999999999886552 23 1 13445667777777777
Q ss_pred HHHHHcCC-CeeEEecCCCCCC---CCHH-----HHHHHhhHHHHHHHHHHHHHHHcC
Q psy629 70 EQVAQFGC-RGFALLFDDIESE---MSEA-----DKEVFQSFAHAQVSVTNEVFEHLG 118 (166)
Q Consensus 70 ~ql~~lGv-r~FailfDDi~~~---~~~~-----d~~~f~~~a~aq~~l~n~v~~~l~ 118 (166)
+.+.++=. +.|-|-.|.+... .+++ .++.+.+....|..+++++.+.+.
T Consensus 140 ~E~~~lF~~~~iHiGgDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~ 197 (311)
T cd06570 140 GEMAELFPDEYFHIGGDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILS 197 (311)
T ss_pred HHHHHhCCCCceEeeccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 77777543 4578889998743 1222 122233455677777777776553
No 189
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=38.47 E-value=75 Score=28.70 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC--HHHHHHHHHHHHHHHH-----cCCCeeEEecC-CCCCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS--GKEVATLKRKLEQVAQ-----FGCRGFALLFD-DIESE 90 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~--~~d~~~L~~K~~ql~~-----lGvr~FailfD-Di~~~ 90 (166)
..+.+-=+.|.+.|++.+++|+ ||+|-++ ++. ..+=...+.+|+.+|. +++-.|.+|-+ |..+.
T Consensus 40 ~~Q~~VA~~M~~~~~~~~~~FV--ls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~Gn 111 (394)
T PTZ00422 40 KQQKLVASYLKQYAKNERVTFL--VSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGN 111 (394)
T ss_pred hhHHHHHHHHHHHHHhCCCCEE--EECCccc-cCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcccccCC
Confidence 3444445567777788888887 6789887 542 1223679999999992 77888998843 45443
No 190
>KOG4013|consensus
Probab=37.93 E-value=68 Score=26.81 Aligned_cols=40 Identities=30% Similarity=0.525 Sum_probs=33.1
Q ss_pred CCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeE
Q psy629 41 GIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFA 81 (166)
Q Consensus 41 ~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa 81 (166)
-|-....|.| +-|+.||. +++.++++-++.+...|.+-|-
T Consensus 59 ~iP~ycMiRpR~GDFvYsd-~Em~a~~~Dv~llk~~GAdGfV 99 (255)
T KOG4013|consen 59 PIPLYCMIRPRAGDFVYSD-DEMAANMEDVELLKKAGADGFV 99 (255)
T ss_pred ccceEEEEecCCCCcccch-HHHHHHHHHHHHHHHcCCCceE
Confidence 4667778899 44999975 6799999999999999999853
No 191
>PRK03906 mannonate dehydratase; Provisional
Probab=37.19 E-value=1.4e+02 Score=26.81 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEE--EecCCCCCCCC---CHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYY--ALSPGLDITYS---SGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~--aisPG~~~~~s---~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+.||.+++.++++.++. .|+++-. .+.|-.+|... .++.++..++-++.|-..||.-.+--|
T Consensus 38 ~~W~~~~i~~~~~~ie~---~Gl~~~vvEs~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYnf 104 (385)
T PRK03906 38 EVWPVEEILARKAEIEA---AGLEWSVVESVPVHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYNF 104 (385)
T ss_pred CCCCHHHHHHHHHHHHH---cCCeEEEEeCCCccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 67888888888887765 5777665 44444455444 367899999999999999999887766
No 192
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=37.16 E-value=1.7e+02 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDIT--YSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~--~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
++..+.|.++++.|.+.+|+|+. .-|--+. --+.+.+..+.+-|..|.+.|+--|+|.
T Consensus 23 ~d~~~~f~~~l~~a~~~~vD~vl--iAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~ 82 (390)
T COG0420 23 EDQKKAFDELLEIAKEEKVDFVL--IAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIA 82 (390)
T ss_pred HHHHHHHHHHHHHHHHccCCEEE--EccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEec
Confidence 45568899999999999999984 5554332 1245778888888888888999999964
No 193
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=37.06 E-value=1.7e+02 Score=23.73 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCC--CCCCHHHHHHHHHHHHHHH----HcCCCeeEE
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSPGLDI--TYSSGKEVATLKRKLEQVA----QFGCRGFAL 82 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisPG~~~--~~s~~~d~~~L~~K~~ql~----~lGvr~Fai 82 (166)
.++.+++.++.|++.|++.+.. ||.+. ...+++..+.+.+.|+.+. +.|| .+++
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~l 151 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQL--AGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-MLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEE--CCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EEEE
Confidence 4678888889999999888763 33321 1223445555555555543 4566 3444
No 194
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=37.04 E-value=1.6e+02 Score=21.69 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
-++=..++..|.++.+..++.|+.| ++||+
T Consensus 43 ~p~C~~~~~~l~~~~~~~~~~~v~v-i~Is~ 72 (154)
T PRK09437 43 TPGCTVQACGLRDNMDELKKAGVVV-LGIST 72 (154)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEE-EEEcC
Confidence 4444567888899999988899986 78886
No 195
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.03 E-value=2.1e+02 Score=22.50 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 34 ISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
++.++++||.+|.--++-....+-.....+.-..=.+.|.+.|.+.++++..+-.
T Consensus 71 ~~~~~~~~iPvv~~~~~~~~~~~V~~d~~~ag~~a~~~L~~~g~~~i~~i~~~~~ 125 (265)
T cd06285 71 LDELTRRGVPFVLVLRHAGTSPAVTGDDVLGGRLATRHLLDLGHRRIAVLAGPDY 125 (265)
T ss_pred HHHHHHcCCCEEEEccCCCCCCEEEeCcHHHHHHHHHHHHHCCCccEEEEeCCcc
Confidence 4556777888766544311211111112233333345567789999999876543
No 196
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=36.99 E-value=33 Score=31.85 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=31.0
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 43 DFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 43 ~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
..+|-||++ .|+...+++.+++||+.|.+|||+..-|+
T Consensus 94 ~viYE~hv~---~f~~~G~~~gi~~~l~yl~~LGv~~i~L~ 131 (542)
T TIGR02402 94 AVIYELHVG---TFTPEGTFDAAIEKLPYLADLGITAIELM 131 (542)
T ss_pred cEEEEEEhh---hcCCCCCHHHHHHhhHHHHHcCCCEEEeC
Confidence 368888886 23335689999999999999999999876
No 197
>PRK09450 cyaA adenylate cyclase; Provisional
Probab=36.87 E-value=1.9e+02 Score=28.73 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=45.4
Q ss_pred HCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHH----HcCCCe-eEEe---------cCC-CCCCCCHHHHHHHhhHH
Q psy629 39 EQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVA----QFGCRG-FALL---------FDD-IESEMSEADKEVFQSFA 103 (166)
Q Consensus 39 ~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~----~lGvr~-Fail---------fDD-i~~~~~~~d~~~f~~~a 103 (166)
.+.+++.++-+|+++ +++++.|.+|.+.|- ..||.. |-|. +++ ++++.| |
T Consensus 112 ~SDlDiWvCh~~~L~-----~~~~~~L~~K~~li~~WA~~~gvEv~FFLmd~~~Fr~~~~~~~l~~E~c----------G 176 (830)
T PRK09450 112 SSDLDIWVCHRPWLD-----AEERQLLQRKCSLLEQWAASLGVEVNFFLMDEERFRHNESGSALGGEDC----------G 176 (830)
T ss_pred CCCCeEEEECCCCCC-----HHHHHHHHHHHHHHHHHHHHcCCEEEEEEECHHHhhcccccccCCCCCC----------h
Confidence 344455555444443 588999999998764 467765 3222 222 444444 5
Q ss_pred HHHHHH-HHHHHH---HcCCC-C-ceEcccccc
Q psy629 104 HAQVSV-TNEVFE---HLGQP-K-FMLCPTQYC 130 (166)
Q Consensus 104 ~aq~~l-~n~v~~---~l~~~-~-l~~cPt~Y~ 130 (166)
.+|-.+ +.+.++ ++..+ + +.++|.+.-
T Consensus 177 SaQh~LLLDEFYRTai~LAGk~~lWw~vp~~~E 209 (830)
T PRK09450 177 STQHILLLDEFYRTAIRLAGKRPLWWLVPVEEE 209 (830)
T ss_pred HHHHHHHHHHHHHHhHHhcCCccccccCCchhh
Confidence 677766 566765 44444 3 778897743
No 198
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=36.86 E-value=1.4e+02 Score=26.09 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
+.+.++++.|+++|+.+++-+|.
T Consensus 191 ~~~~~~~~~A~~~g~~v~lD~s~ 213 (367)
T PLN02379 191 EVIEAAIRLAKQEGLSVSLDLAS 213 (367)
T ss_pred HHHHHHHHHHHHcCCEEEEeccc
Confidence 46778889999999999999874
No 199
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=36.56 E-value=1.4e+02 Score=26.11 Aligned_cols=54 Identities=6% Similarity=0.008 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCC-----------CCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 30 LTGLISAAKEQGIDFYYALSPGLD-----------ITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 30 l~~L~~~a~~~~v~Fv~aisPG~~-----------~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.++|++.-++.|++.+.-++|+.. .+|.+++..+=-...++.+++.||+.|-+=
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~D 130 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQD 130 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecC
Confidence 356777778899999999999542 356666655655667788999999986543
No 200
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=36.36 E-value=2.2e+02 Score=22.66 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHcCCCeeEEecC-C----CCCCCCHHH
Q psy629 22 YSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS-GKEVATLKRKLEQVAQFGCRGFALLFD-D----IESEMSEAD 95 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~-~~d~~~L~~K~~ql~~lGvr~FailfD-D----i~~~~~~~d 95 (166)
.|+.-.+.+..+++.+++.+++|++ +-|--+.... .++...+.+-++.|.+.|+-.+.+.-. | ++...+
T Consensus 16 ~~~~~~~~~~~i~~~~~~~~~d~iv--~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~~~ld~~~~--- 90 (214)
T cd07399 16 YPEVFDAQTDWIVDNAEALNIAFVL--HLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHDLVLALEFGPR--- 90 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEE--ECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCcchhhCCCCCC---
Confidence 4455556888999999999999864 5565555444 567788888888888777776654311 1 111122
Q ss_pred HHHHhhHHHHHHHHHHHHHHHcCCCC-ceEc--cccccccccCCC------CCChhHHHHHhhccCCCceEEeeC
Q psy629 96 KEVFQSFAHAQVSVTNEVFEHLGQPK-FMLC--PTQYCSTRAVPN------VKNSEYLNTLGSKLAKEIDIMWTG 161 (166)
Q Consensus 96 ~~~f~~~a~aq~~l~n~v~~~l~~~~-l~~c--Pt~Y~~~~~~~~------~~~~~Yl~~l~~~L~~~i~i~WTG 161 (166)
..|..-++++.+..+..+ ++|| |..-.+.+.... .....-+..|-+ -.++|..+.+|
T Consensus 91 --------~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~V~~v~~G 156 (214)
T cd07399 91 --------DEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVK-KNDNVFMVLSG 156 (214)
T ss_pred --------HHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHh-CCCCEEEEEcc
Confidence 345565666555555544 5555 544332221110 112223444332 23578887777
No 201
>PLN02229 alpha-galactosidase
Probab=36.29 E-value=2.9e+02 Score=25.33 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE 90 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~ 90 (166)
.-|+.|++..++.|++|++=..+|..-|-.....+.--..=.+++.+-||+-.= .|++...
T Consensus 128 ~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~e~~DA~~fA~WGVDylK--~D~C~~~ 188 (427)
T PLN02229 128 SGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFHEVDDADIFASWGVDYLK--YDNCYNL 188 (427)
T ss_pred CcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccHHHHHHHHHHHcCCCEEE--ecCCCCC
Confidence 469999999999999999999999765422110001111116678899999765 8888654
No 202
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=36.27 E-value=46 Score=29.51 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.++-++.++.+.+....-+++++||| ||.+. +.+.+=++++.++|+.++++.
T Consensus 146 ~~~~~~ai~~~~~~~~~v~~DlI~Gl-Pgqt~--------e~~~~~l~~~~~l~p~his~y 197 (390)
T PRK06582 146 CMQAIKTIEAANTIFPRVSFDLIYAR-SGQTL--------KDWQEELKQAMQLATSHISLY 197 (390)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeecCC-CCCCH--------HHHHHHHHHHHhcCCCEEEEe
No 203
>PRK05660 HemN family oxidoreductase; Provisional
Probab=36.26 E-value=92 Score=27.37 Aligned_cols=51 Identities=10% Similarity=0.244 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHH-----CCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 28 EHLTGLISAAKE-----QGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 28 ~~l~~L~~~a~~-----~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
+.|.+|++..++ .++.+..-.+|+. + -..+++.|.++||+.++|-++..+.
T Consensus 75 ~~l~~ll~~l~~~~~~~~~~eit~e~np~~-l----------~~e~l~~Lk~~Gv~risiGvqS~~~ 130 (378)
T PRK05660 75 EAIQRLLDGVRARLPFAPDAEITMEANPGT-V----------EADRFVGYQRAGVNRISIGVQSFSE 130 (378)
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEEeCcCc-C----------CHHHHHHHHHcCCCEEEeccCcCCH
Confidence 455555555554 3456666666632 1 1167888889999999998887764
No 204
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=36.17 E-value=1e+02 Score=27.78 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=36.3
Q ss_pred hhhhccCCCHHHHH-HHHHHHHHH-HHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 15 RAYWRDLYSVEEAE-HLTGLISAA-KEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 15 r~~Wre~Yp~~~l~-~l~~L~~~a-~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
+..-...++.++.. .++.+.+.+ ..-+++|+||+ ||.+ .+.+.+-++.+.++|+.+..+.
T Consensus 189 Lk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl-PgqT--------~e~~~~~l~~~~~l~~~~is~y 250 (449)
T PRK09058 189 RRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL-PGQT--------PEIWQQDLAIVRDLGLDGVDLY 250 (449)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC-CCCC--------HHHHHHHHHHHHhcCCCEEEEe
Confidence 33344455555443 344444333 34556777776 5554 3556667888899999988766
No 205
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.13 E-value=3e+02 Score=24.10 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCH------HHHHHHHHHHHHHHHcCCCe
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG------KEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~------~d~~~L~~K~~ql~~lGvr~ 79 (166)
.-.+.++++.+.++++||+. ++|||.-++++|+ ..++.|..-.+-|..+|+..
T Consensus 91 ~~~~~l~~iG~~a~~~~iRL--S~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~ 149 (312)
T TIGR00629 91 FAQKELREIGELAKTHQHRL--TFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAE 149 (312)
T ss_pred HHHHHHHHHHHHHHHcCeEE--EECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 44578999999999999764 6899999988872 35666777777777888764
No 206
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=35.71 E-value=1.1e+02 Score=26.30 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCeEEE--EecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 27 AEHLTGLISAAKEQGIDFYY--ALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~--aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
.+..-+-++.+++.|+.+.. .+.++. +.+++..+.+ .+.++||+.+.+
T Consensus 148 f~~~l~~I~~l~~~G~~v~v~~tv~~~~-----n~~ei~~~~~---~~~~lGv~~i~i 197 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTNTTLFNDT-----DPEEVAEFFD---YLTDLGVDGMTI 197 (318)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEeCCC-----CHHHHHHHHH---HHHHcCCCEEEE
Confidence 34555666666667766544 333432 2345555554 457789998776
No 207
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=35.62 E-value=1.8e+02 Score=24.77 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHh
Q psy629 59 GKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQ 100 (166)
Q Consensus 59 ~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~ 100 (166)
.+++..|-.=++.|.+.. ..|=||+||.+-...+.....++
T Consensus 88 k~~L~~l~~l~~~l~~~~-~kFIlf~DDLsFe~~d~~yk~LK 128 (249)
T PF05673_consen 88 KEDLGDLPELLDLLRDRP-YKFILFCDDLSFEEGDTEYKALK 128 (249)
T ss_pred HHHhccHHHHHHHHhcCC-CCEEEEecCCCCCCCcHHHHHHH
Confidence 356666766677777655 68999999999666655444333
No 208
>PLN02692 alpha-galactosidase
Probab=35.49 E-value=3.5e+02 Score=24.69 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCC---CCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDIT---YSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE 90 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~---~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~ 90 (166)
.-|+.|++..++.|++|++=+.+|...| +......+..- .+++.+-||+..= .|++...
T Consensus 121 ~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~D--A~~fA~WGvDylK--~D~C~~~ 182 (412)
T PLN02692 121 SGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQD--AKTFASWGIDYLK--YDNCNND 182 (412)
T ss_pred CcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHH--HHHHHhcCCCEEe--ccccCCC
Confidence 4699999999999999999999998877 22112222222 3567889999655 8888654
No 209
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=35.26 E-value=28 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEe
Q psy629 61 EVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~Fail 83 (166)
|++-|++||+.|.+|||+..-|.
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~ 24 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS 24 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES
T ss_pred CHHHHHHhhHHHHHcCCCceecc
Confidence 57889999999999999998876
No 210
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.00 E-value=3.1e+02 Score=23.91 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=45.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHH
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEAD 95 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d 95 (166)
+|-.....+.+...+.++.+++.|......+. +... .+ .+.|.+..+.+.+.|++.|. +=|--+.+.+.+
T Consensus 104 iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~--~s~~-~~---~e~l~~~a~~~~~~Ga~~i~--i~DT~G~~~P~~ 173 (333)
T TIGR03217 104 VRVATHCTEADVSEQHIGMARELGMDTVGFLM--MSHM-TP---PEKLAEQAKLMESYGADCVY--IVDSAGAMLPDD 173 (333)
T ss_pred EEEEeccchHHHHHHHHHHHHHcCCeEEEEEE--cccC-CC---HHHHHHHHHHHHhcCCCEEE--EccCCCCCCHHH
Confidence 34334445566788999999999988776663 1112 22 35677777778889999875 456555555443
No 211
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=34.54 E-value=1.4e+02 Score=26.25 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCC---CCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDI---TYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~---~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
..++++++++.+|++.|.+.|+ .+++-|+.. .+.+++++..+ ++.+.+.|. .+.+-.++-
T Consensus 160 ~~~~~~~~~~~~l~~~al~~Ga---~g~~~~~~y~~~~~~~~~~l~~~---~~~a~~~g~-~v~~H~e~~ 222 (415)
T cd01297 160 EATEEELAKMRELLREALEAGA---LGISTGLAYAPRLYAGTAELVAL---ARVAARYGG-VYQTHVRYE 222 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC---eEEEcccccCCcccCCHHHHHHH---HHHHHHcCC-EEEEEECcc
Confidence 4578899999999999999996 233322211 13344444444 444556666 455555543
No 212
>PRK09989 hypothetical protein; Provisional
Probab=34.45 E-value=1.7e+02 Score=23.70 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC-HHHHHHHHHHHHHHH----HcCCC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS-GKEVATLKRKLEQVA----QFGCR 78 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~-~~d~~~L~~K~~ql~----~lGvr 78 (166)
+..+.+++.++.|++.|+..+. ++||..-...+ ++..+.+..-|..+. +.||+
T Consensus 82 ~~~~~l~~~i~~A~~lg~~~v~-v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 139 (258)
T PRK09989 82 EARADIDLALEYALALNCEQVH-VMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKR 139 (258)
T ss_pred HHHHHHHHHHHHHHHhCcCEEE-ECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 3467899999999999999775 55654222222 333444555554444 46776
No 213
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.33 E-value=1.3e+02 Score=23.60 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEe-cCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 28 EHLTGLISAAKEQGIDFYYAL-SPGLDITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~ai-sPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
..+.++++.+++.|+.++.++ +|.- ....+..+.++|++..++
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~~~~~t------------~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDLINVKD------------KVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCC------------hHHHHHHHHHcCCCEEEE
Confidence 356788888999999998884 6632 223344557789998876
No 214
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=34.21 E-value=2.5e+02 Score=24.29 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe-cCCCCCCCCHHHHHHHhhHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL-FDDIESEMSEADKEVFQSFAHAQV 107 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail-fDDi~~~~~~~d~~~f~~~a~aq~ 107 (166)
+.++-++..++.|+.+... ++=+.-..++.+++.+|.+ .+.++||+-+.++ +|.+++... |.-.-..-.
T Consensus 238 ~~~~ai~~L~~aGi~v~~q-tvLl~gvnD~~~~l~~L~~---~l~~~gV~pyyl~~~~~~~g~~~------f~~~~~~~~ 307 (331)
T TIGR00238 238 EFAEAMKKLRTVNVTLLNQ-SVLLRGVNDRAQILAKLSI---ALFKVGIIPYYLHYLDKVQGAKH------FLVPDAEAA 307 (331)
T ss_pred HHHHHHHHHHHcCCEEEee-cceECCcCCCHHHHHHHHH---HHhhcCeecCeecCcCCCCCccc------ccCCHHHHH
Confidence 3445555566677654432 2212222233444555554 5667899888877 555555321 221112234
Q ss_pred HHHHHHHHHcCC
Q psy629 108 SVTNEVFEHLGQ 119 (166)
Q Consensus 108 ~l~n~v~~~l~~ 119 (166)
+++..+.++++.
T Consensus 308 ~i~~~l~~~~sG 319 (331)
T TIGR00238 308 QIVKELARLTSG 319 (331)
T ss_pred HHHHHHHhcCCC
Confidence 556677777755
No 215
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=34.19 E-value=2.6e+02 Score=22.91 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHCCCe------------------EEEEecCCCCCCCCCHHHHHHHHHHHHHHH-HcCCCeeEEec
Q psy629 24 VEEAEHLTGLISAAKEQGID------------------FYYALSPGLDITYSSGKEVATLKRKLEQVA-QFGCRGFALLF 84 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~------------------Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~-~lGvr~Failf 84 (166)
+++.+.|.+++..+++.... +.+.||.-..+.. ..++.+++++++-. ..+++.|.|.|
T Consensus 52 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~s~lg~~~~lHISLSr~~~lr~---~~id~f~~~lr~~l~~~~~~~F~v~f 128 (239)
T PF09749_consen 52 EDQRELLEKLISKANSICPKLHSEFEPLLYSDLGSPDPLHISLSRTFPLRT---HQIDPFVDSLRQALRSSNIRPFYVSF 128 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCCeEEEeCCCccccH---HHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 34677888888888877663 5555555444432 56777777777655 58999999999
Q ss_pred CCCC
Q psy629 85 DDIE 88 (166)
Q Consensus 85 DDi~ 88 (166)
+.+.
T Consensus 129 ~~~~ 132 (239)
T PF09749_consen 129 SGLD 132 (239)
T ss_pred CceE
Confidence 9955
No 216
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=34.17 E-value=64 Score=27.26 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=38.9
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHCCCeE-EEEecCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629 13 KHRAYWRDLYSVEEAEHLTGLISAAKEQGIDF-YYALSPGL-------DITYSSGKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 13 yhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~F-v~aisPG~-------~~~~s~~~d~~~L~~K~~ql~~lGvr~ 79 (166)
||..+|+- ++++ ++.++++..++.||.+ ++-|-.|. ++.++ .+.+...++-+++|.+.|++-
T Consensus 13 ~~~~~~~y-~~~~---~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d-~~~FPd~~~~i~~l~~~G~~~ 82 (308)
T cd06593 13 LWLSRSFY-YDEE---EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFD-PDRFPDPEGMLSRLKEKGFKV 82 (308)
T ss_pred HHHHcccC-CCHH---HHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEEC-cccCCCHHHHHHHHHHCCCeE
Confidence 45555554 4444 4689999999999665 23444432 23333 234555677778888999994
No 217
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=34.13 E-value=4.1e+02 Score=25.35 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 26 EAEHLTGLISAAKEQGIDFYYA----LSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~a----isPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+...++.-++++++.|....-+ .|| .+ ..+.+.+..+++.++|++.++ +=|.-|.+.+.
T Consensus 121 d~~n~~~~i~~~k~~G~~~~~~i~yt~sp----~~----t~e~~~~~ak~l~~~Gad~I~--IkDtaG~l~P~ 183 (596)
T PRK14042 121 DARNLKVAIDAIKSHKKHAQGAICYTTSP----VH----TLDNFLELGKKLAEMGCDSIA--IKDMAGLLTPT 183 (596)
T ss_pred chHHHHHHHHHHHHcCCEEEEEEEecCCC----CC----CHHHHHHHHHHHHHcCCCEEE--eCCcccCCCHH
Confidence 3466666777777777765444 455 22 357788888889999999766 67888877654
No 218
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=33.90 E-value=1.9e+02 Score=23.92 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
..+...+.++.+++.|+.++..+-.|+.. +.+++.. =++.+.++|+..+.+.
T Consensus 156 s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~e---t~~d~~~---~~~~l~~l~~~~i~l~ 207 (296)
T TIGR00433 156 TYDDRVDTLENAKKAGLKVCSGGIFGLGE---TVEDRIG---LALALANLPPESVPIN 207 (296)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeEEEeCCC---CHHHHHH---HHHHHHhCCCCEEEee
Confidence 34555567777888999988887788743 3344444 4455667798876543
No 219
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=33.88 E-value=74 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
..|+.=++...-+|+..|-+...++.
T Consensus 18 ~~l~e~ie~~~~~G~~~~~~Y~~~~~ 43 (285)
T PF01697_consen 18 LQLIEWIEYHRLLGVDHFYFYDNSSS 43 (285)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCC
Confidence 35555566666666666666665543
No 220
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.87 E-value=2.2e+02 Score=23.96 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCC--------------------------CCCCHHHHHHHHHHH-HHHHHcCCCeeE
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDI--------------------------TYSSGKEVATLKRKL-EQVAQFGCRGFA 81 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~--------------------------~~s~~~d~~~L~~K~-~ql~~lGvr~Fa 81 (166)
..++|++.-++.|++++.-++|+..+ ++++++.++-..+++ +.+.++||+.|-
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W 154 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWW 154 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 56888899999999999999996422 233333343333333 456789998887
Q ss_pred Eec
Q psy629 82 LLF 84 (166)
Q Consensus 82 ilf 84 (166)
+=+
T Consensus 155 ~D~ 157 (292)
T cd06595 155 LDW 157 (292)
T ss_pred ecC
Confidence 533
No 221
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.86 E-value=1.7e+02 Score=24.27 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
...+.++++++.++|+-+=+--|+
T Consensus 176 ~~~~~~il~~~~~~g~~lEiNt~~ 199 (269)
T PRK07328 176 TELYEEALDVIAAAGLALEVNTAG 199 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 356788888888888877666653
No 222
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=33.73 E-value=3.2e+02 Score=23.69 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=48.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCCC--------------------CCCHHHHHHHHHHHHHH----HH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSP-GLDIT--------------------YSSGKEVATLKRKLEQV----AQ 74 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~--------------------~s~~~d~~~L~~K~~ql----~~ 74 (166)
-.|.++.+..|++|+++.++.|..++.-|.. |.... -=+.+|++.+++.|.+- .+
T Consensus 69 ~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~ 148 (353)
T cd02930 69 VLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALARE 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999988733 33110 01357888888877654 66
Q ss_pred cCCCeeEEec
Q psy629 75 FGCRGFALLF 84 (166)
Q Consensus 75 lGvr~Failf 84 (166)
.|.+..-|..
T Consensus 149 aGfDgVeih~ 158 (353)
T cd02930 149 AGYDGVEIMG 158 (353)
T ss_pred cCCCEEEEec
Confidence 8888877754
No 223
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=33.64 E-value=46 Score=30.18 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.++|++||++|+++||+.+.=+-+
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 678999999999999998776554
No 224
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=33.63 E-value=2.2e+02 Score=21.75 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHCCCeEEEEecC--C-CC-CCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHH-
Q psy629 33 LISAAKEQGIDFYYALSP--G-LD-ITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQV- 107 (166)
Q Consensus 33 L~~~a~~~~v~Fv~aisP--G-~~-~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~- 107 (166)
+++.++++||.++.--+. . .. ..+. ..+.+....-.+.|.+.|.+.++++..+........-.+.|......+.
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~~~~~~~~v~-~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIPDGDRVPSVG-SDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGP 149 (264)
T ss_pred HHHHhhhcCCCEEEeccCCCCCcccceEe-cCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcCC
Confidence 456667777776543222 1 11 1111 1223444444566777899999999776653332222334433221110
Q ss_pred -H-------------HHHHHHHHcC---CCCceEccccccccccCCCCCChhHHHHHhhccCCCceEE
Q psy629 108 -S-------------VTNEVFEHLG---QPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIM 158 (166)
Q Consensus 108 -~-------------l~n~v~~~l~---~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~ 158 (166)
. ....+.+.+. .+.-+||+..-.... --..++..|..++.+|.|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~------~~~~~~~~g~~i~~~i~i~ 211 (264)
T cd01537 150 IEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMALG------ALRALREAGLRVPDDISVI 211 (264)
T ss_pred cChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHH------HHHHHHHhCCCCCCCeEEE
Confidence 0 0111122222 244677776433221 1345677776677788777
No 225
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=33.54 E-value=3.1e+02 Score=25.24 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCC------ceEccccccccccC
Q psy629 62 VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPK------FMLCPTQYCSTRAV 135 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~------l~~cPt~Y~~~~~~ 135 (166)
..++-+.|+-+.+||+--|+.-=+||-... ...+|.-.++.. .+..+.+..+..|.+- |..-|.+=.+...+
T Consensus 77 ~~k~daaFef~~kLg~~~~~FHD~D~~peg-~~~~E~~~~l~~-i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tn 154 (434)
T TIGR02630 77 KAKVDAAFEFFEKLGVPYYCFHDRDIAPEG-ASLRETNANLDE-IVDLIKEKQKETGVKLLWGTANLFSHPRYMHGAATS 154 (434)
T ss_pred HHHHHHHHHHHHHhCCCeeccCccccCCCC-CCHHHHHHHHHH-HHHHHHHHHHhhCceeeeecCCccCCccccCCcCCC
Confidence 344566788899999999984333443332 223333233322 2233333333333332 22234444444444
Q ss_pred CCCCChhH-----H--HHHhhccCCCceEEeeCCC
Q psy629 136 PNVKNSEY-----L--NTLGSKLAKEIDIMWTGPK 163 (166)
Q Consensus 136 ~~~~~~~Y-----l--~~l~~~L~~~i~i~WTG~~ 163 (166)
|+..--.| . -++++.|.-+..|||-|..
T Consensus 155 Pd~~Vra~A~~qvk~alD~~~eLGgenyV~WgGRE 189 (434)
T TIGR02630 155 PDADVFAYAAAQVKKALEVTKKLGGENYVFWGGRE 189 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEECCCcc
Confidence 43311111 0 1356778899999999964
No 226
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.53 E-value=2.2e+02 Score=22.06 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEE-ecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy629 22 YSVEEAEHLTGLISAAKEQGIDFYYA-LSPGLDITYSSGKEVATLKRKLEQVAQ 74 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~Fv~a-isPG~~~~~s~~~d~~~L~~K~~ql~~ 74 (166)
.+++-.+.+++|++.+++.|++.+.. +.|.....+.. ...+.+.+++.+...
T Consensus 100 ~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~~~~~~~-~~~~~~~~~~n~~~~ 152 (204)
T cd01830 100 TAEELIAGYRQLIRRAHARGIKVIGATITPFEGSGYYT-PAREATRQAVNEWIR 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEecCCCCCCCCCCC-HHHHHHHHHHHHHHH
Confidence 44556789999999999999998864 44533222222 234445555555554
No 227
>PRK08508 biotin synthase; Provisional
Probab=33.36 E-value=71 Score=26.85 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
...++..+.++.|++.|+...-++-+|+.- +.+| +..-+..|.++|+++.-+-|
T Consensus 134 ~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE---t~ed---~~~~l~~lr~L~~~svpl~~ 187 (279)
T PRK08508 134 HTWEERFQTCENAKEAGLGLCSGGIFGLGE---SWED---RISFLKSLASLSPHSTPINF 187 (279)
T ss_pred CCHHHHHHHHHHHHHcCCeecceeEEecCC---CHHH---HHHHHHHHHcCCCCEEeeCC
Confidence 334556667777899999999999999743 3344 45555667899999655544
No 228
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=33.30 E-value=48 Score=31.11 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
|....++||+||++|+++||+.+.=+-+
T Consensus 224 ~~~~~~efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 224 PATRIRELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 3345789999999999999988765443
No 229
>PRK05474 xylose isomerase; Provisional
Probab=33.18 E-value=3.9e+02 Score=24.63 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceE------ccccccccccC
Q psy629 62 VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFML------CPTQYCSTRAV 135 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~------cPt~Y~~~~~~ 135 (166)
..++-+.|+-+.+||+--|+.-=+||-.... ..+|.-.++.+ .+..+.+..+..|.+-+.. -|.+=.+...+
T Consensus 78 ~~k~d~afe~~~kLg~~~~~FHD~D~~peg~-s~~E~~~~l~~-i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tn 155 (437)
T PRK05474 78 KAKADAAFEFFTKLGVPYYCFHDVDVAPEGA-SLKEYNANLDE-IVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATN 155 (437)
T ss_pred HHHHHHHHHHHHHhCCCeeccCccccCCCCC-CHHHHHHHHHH-HHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCC
Confidence 3445567888999999999843344433332 23333223322 2333333333334332322 24443444444
Q ss_pred CCCCChhH-----H--HHHhhccCCCceEEeeCCC
Q psy629 136 PNVKNSEY-----L--NTLGSKLAKEIDIMWTGPK 163 (166)
Q Consensus 136 ~~~~~~~Y-----l--~~l~~~L~~~i~i~WTG~~ 163 (166)
|+..--.| . -++++.|.-+..|||-|..
T Consensus 156 pd~~Vra~A~~qvk~alD~~~eLGge~yV~WgGRE 190 (437)
T PRK05474 156 PDPDVFAYAAAQVKTALDATKRLGGENYVFWGGRE 190 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEECCCcc
Confidence 43210111 0 1356778899999999964
No 230
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=33.16 E-value=2e+02 Score=24.68 Aligned_cols=108 Identities=17% Similarity=0.269 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHCC-CeEEEEecC--CCCCCCC-CHHHHHHHHHHHHHHHHcCCCeeEEe-cCC-CCCCCCHHHHHHHh
Q psy629 27 AEHLTGLISAAKEQG-IDFYYALSP--GLDITYS-SGKEVATLKRKLEQVAQFGCRGFALL-FDD-IESEMSEADKEVFQ 100 (166)
Q Consensus 27 l~~l~~L~~~a~~~~-v~Fv~aisP--G~~~~~s-~~~d~~~L~~K~~ql~~lGvr~Fail-fDD-i~~~~~~~d~~~f~ 100 (166)
.+-|+++.+.|+++| ...|+...| -.-+.-+ ... +..+..|++.|.++||+..-++ ||. +. .++.+
T Consensus 15 q~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~-l~~~~~k~~~l~~~Gvd~~~~~~F~~~~a-~ls~e------ 86 (288)
T TIGR00083 15 QALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDKARQLQIKGVEQLLVVVFDEEFA-NLSAL------ 86 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCC-CCCHHHHHHHHHHcCCCEEEEeCCCHHHH-cCCHH------
Confidence 567888888998888 445666655 2111101 112 5566789999999999985554 653 33 23321
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCceEccccccccccCCCCCChhHHHHHhhccC
Q psy629 101 SFAHAQVSVTNEVF-EHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLA 152 (166)
Q Consensus 101 ~~a~aq~~l~n~v~-~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~ 152 (166)
.++.++. +.++.+ -++|-..|.-- ....++.+.|+.+++...
T Consensus 87 -------~Fi~~~l~~~l~~~-~ivvG~Df~FG--~~~~G~~~~L~~~~~~~g 129 (288)
T TIGR00083 87 -------QFIDQLIVKHLHVK-FLVVGDDFRFG--HDRQGDFLLLQLFGNTTI 129 (288)
T ss_pred -------HHHHHHHHhccCCc-EEEECCCccCC--CCCCCCHHHHHHhccccC
Confidence 1222333 334443 45676666532 122356788888886544
No 231
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=33.07 E-value=2.5e+02 Score=22.74 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE 90 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~ 90 (166)
.++|++|++..+++||+.++.= |+.+ + + +.+.+ ..++|++. +-+|-+++.
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e-~~~~----~-~----~~~~l--a~~~g~~v--v~ld~l~~~ 234 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTE-PQFS----S-K----LAEAL--AKETGVKV--VYLDPLGGG 234 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE-TTS-----T-H----HHHHH--HHCCT-EE--EESSTTCST
T ss_pred HHHHHHHHHHhhhcCCcEEEec-CCCC----h-H----HHHHH--HHHcCCcE--EEeCCCcCC
Confidence 4678888999999999999873 3221 1 2 22222 34688888 778998433
No 232
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=32.87 E-value=1.5e+02 Score=29.06 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCeEEEEecCCC-----------------------------------CCCCCCHHHHHHHH-HHHHHHHH
Q psy629 31 TGLISAAKEQGIDFYYALSPGL-----------------------------------DITYSSGKEVATLK-RKLEQVAQ 74 (166)
Q Consensus 31 ~~L~~~a~~~~v~Fv~aisPG~-----------------------------------~~~~s~~~d~~~L~-~K~~ql~~ 74 (166)
+.|++.-++.|++++.-|.|.. -++|.+++..+--. .+.+.|.+
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d 403 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLD 403 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHh
Confidence 3888888999999999999952 13566666666666 58899999
Q ss_pred cCCCeeEEecCC
Q psy629 75 FGCRGFALLFDD 86 (166)
Q Consensus 75 lGvr~FailfDD 86 (166)
+||..|-.=+.+
T Consensus 404 ~Gv~g~W~D~nE 415 (772)
T COG1501 404 LGVDGFWNDMNE 415 (772)
T ss_pred cCccEEEccCCC
Confidence 999999854444
No 233
>PTZ00056 glutathione peroxidase; Provisional
Probab=32.77 E-value=1.6e+02 Score=23.49 Aligned_cols=57 Identities=11% Similarity=0.225 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGL--DITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~--~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
++-.+|+..|.+|.+.-++.|+.+ +||+... +..+.+.+++.+.+++ .|+ .|-++.|
T Consensus 52 ~~C~~e~p~L~~l~~~~~~~g~~v-vgv~~~~~~~~e~d~~e~~~~f~~~------~~~-~fpvl~d 110 (199)
T PTZ00056 52 GLTKKHVDQMNRLHSVFNPLGLEI-LAFPTSQFLNQEFPNTKDIRKFNDK------NKI-KYNFFEP 110 (199)
T ss_pred CChHHHHHHHHHHHHHHhcCceEE-EEecchhccCCCCCCHHHHHHHHHH------cCC-Cceeeee
Confidence 455778889999999988889876 7887632 2333444555555433 455 3666553
No 234
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=32.49 E-value=1.9e+02 Score=24.39 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCeEE--EEecCCCCCCCC-------CHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 29 HLTGLISAAKEQGIDFY--YALSPGLDITYS-------SGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv--~aisPG~~~~~s-------~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
+..+.++++.+.||.++ ++|.|--+..+. +++..+.++++...+.++|+.. |++.=+
T Consensus 115 ~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~--i~lE~v 180 (254)
T cd06557 115 EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFA--LVLECV 180 (254)
T ss_pred HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCE--EEEcCC
Confidence 56677777888998876 788884433221 3556899999999999999865 444433
No 235
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=32.46 E-value=2.5e+02 Score=23.41 Aligned_cols=53 Identities=34% Similarity=0.402 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCeE--EEEecCCCCCCCCC-HHHHHHHHHHHHHHHHcCCCeeE
Q psy629 26 EAEHLTGLISAAKEQGIDF--YYALSPGLDITYSS-GKEVATLKRKLEQVAQFGCRGFA 81 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~F--v~aisPG~~~~~s~-~~d~~~L~~K~~ql~~lGvr~Fa 81 (166)
-+++|..|++.|++.||.= +=++.=|-|..-.| ..-++.|.+++.+ +|+-.+|
T Consensus 44 h~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~---~~~g~IA 99 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE---IGIGRIA 99 (223)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH---HTCTEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh---hCCceEE
Confidence 3689999999999999974 33444466654433 3566777777666 5553444
No 236
>KOG2943|consensus
Probab=32.24 E-value=26 Score=30.04 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=46.0
Q ss_pred eeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHH--------------HCCCeEEEEecC-CCCCCCCCHHHHHHHH
Q psy629 3 SYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAK--------------EQGIDFYYALSP-GLDITYSSGKEVATLK 66 (166)
Q Consensus 3 ~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~--------------~~~v~Fv~aisP-G~~~~~s~~~d~~~L~ 66 (166)
+|.|.+-+-..--.+=.=.+|++++-.+.++++.++ ...|..|..+-| |..|||-.++++.+|.
T Consensus 199 t~~~~~id~~kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~ls 277 (299)
T KOG2943|consen 199 TYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLS 277 (299)
T ss_pred EeccCcccccccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHh
Confidence 455555443333344455789999999999999884 356888899999 8899998878776653
No 237
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=32.09 E-value=55 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.1
Q ss_pred cCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEeeCC
Q psy629 117 LGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGP 162 (166)
Q Consensus 117 l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WTG~ 162 (166)
+|..-+-|-|-+..+ +..|++.+. +..++|.+++||.
T Consensus 125 ~G~~~lK~FPa~~~G--------g~~~~ka~~-gP~~~v~~~pTGG 161 (211)
T COG0800 125 LGASALKFFPAEVVG--------GPAMLKALA-GPFPQVRFCPTGG 161 (211)
T ss_pred cChhheeecCccccC--------cHHHHHHHc-CCCCCCeEeecCC
Confidence 455567778888764 578999997 8999999999996
No 238
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.04 E-value=85 Score=22.89 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F 80 (166)
.+..+++.+++.|++ ++|||..+- |.+.++.+... +.|+.-.
T Consensus 62 ~~e~I~~ia~~~g~~---~i~pGyg~l-se~~~fa~~~~------~~gi~fi 103 (110)
T PF00289_consen 62 NIEAIIDIARKEGAD---AIHPGYGFL-SENAEFAEACE------DAGIIFI 103 (110)
T ss_dssp SHHHHHHHHHHTTES---EEESTSSTT-TTHHHHHHHHH------HTT-EES
T ss_pred cHHHHhhHhhhhcCc---ccccccchh-HHHHHHHHHHH------HCCCEEE
Confidence 467788899999855 578998753 33344444333 6776544
No 239
>KOG0389|consensus
Probab=31.99 E-value=77 Score=31.55 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCeeEEecCCCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHH-cCCCCceEcccccccccc---------
Q psy629 66 KRKLEQVAQFGCRGFALLFDDIE-SEMSEADKEVFQSFAHAQVSVTNEVFEH-LGQPKFMLCPTQYCSTRA--------- 134 (166)
Q Consensus 66 ~~K~~ql~~lGvr~FailfDDi~-~~~~~~d~~~f~~~a~aq~~l~n~v~~~-l~~~~l~~cPt~Y~~~~~--------- 134 (166)
++=|--||..|... ||.|+|+ |..|. + +.++..+.+. ...|.|++||.-=-.+|.
T Consensus 408 vNWL~Llyk~~l~g--ILADEMGLGKTiQ-----------v-IaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPs 473 (941)
T KOG0389|consen 408 VNWLLLLYKKKLNG--ILADEMGLGKTIQ-----------V-IAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPS 473 (941)
T ss_pred HHHHHHHHHccccc--eehhhccCcchhH-----------H-HHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCc
Confidence 45566778888875 9999999 76662 1 1333333322 134669999875333331
Q ss_pred ---CCCCCChhHHHHHhhccCC---CceEEeeC
Q psy629 135 ---VPNVKNSEYLNTLGSKLAK---EIDIMWTG 161 (166)
Q Consensus 135 ---~~~~~~~~Yl~~l~~~L~~---~i~i~WTG 161 (166)
.+--++..+.+++...+.. +..|+-|-
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTT 506 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTT 506 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEE
Confidence 1111445566666554444 45555553
No 240
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=31.96 E-value=2.4e+02 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
+....=.+.|.+.|.+..+++.....
T Consensus 106 ~~~~~a~~~l~~~g~~~i~~i~~~~~ 131 (268)
T cd06271 106 AAAYQAVRRLIALGHRRIALLNPPED 131 (268)
T ss_pred HHHHHHHHHHHHcCCCcEEEecCccc
Confidence 33333345567789999999875543
No 241
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=31.93 E-value=1.1e+02 Score=21.93 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEE-------ecCCCCCCCCCH---HHHHHHHHHHHHHHHc
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYA-------LSPGLDITYSSG---KEVATLKRKLEQVAQF 75 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~a-------isPG~~~~~s~~---~d~~~L~~K~~ql~~l 75 (166)
+++|+.-|+.|++...++|....-- |.+-++..++.. +-+..|++|+.....-
T Consensus 9 ~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 9 EEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred chHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999721111 111123344321 3466666776666655
No 242
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=31.88 E-value=47 Score=27.70 Aligned_cols=26 Identities=19% Similarity=0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCC--eEEEEecCCCC
Q psy629 28 EHLTGLISAAKEQGI--DFYYALSPGLD 53 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v--~Fv~aisPG~~ 53 (166)
..+.++++..+++|+ +.+.||.|+..
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp 130 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETP 130 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCC
Confidence 457788899999999 99999999854
No 243
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=31.79 E-value=1.6e+02 Score=24.47 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCC--CCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSP-GLDI--TYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~--~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
..+.+++++++++.|++.|+.|..-..| |..+ +++ .+ .+..-.+...++|++..-.-
T Consensus 121 ~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~-~~---~i~~a~~~a~e~GAD~vKt~ 180 (267)
T PRK07226 121 EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD-PE---VVAHAARVAAELGADIVKTN 180 (267)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc-HH---HHHHHHHHHHHHCCCEEeeC
Confidence 4556889999999999999998875444 4332 221 22 22222355668999887554
No 244
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=31.61 E-value=4.4e+02 Score=24.69 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH----HCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 27 AEHLTGLISAAK----EQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 27 l~~l~~L~~~a~----~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
.++++++...|= ...+..+..||=|+|- .-+.++.++. ..-.++.|++-|+|-
T Consensus 240 ~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDS-----s~Iaa~~~~~---~~~~i~t~s~~~~~~ 296 (628)
T TIGR03108 240 LAELIERLREAVRSRMVADVPLGAFLSGGVDS-----SAVVALMAGL---SDTPVNTCSIAFDDP 296 (628)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEeecCCccH-----HHHHHHHHHh---cCCCCcEEEEecCCC
Confidence 456777776663 3678888999999982 3355555543 234588999999874
No 245
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=31.48 E-value=2.6e+02 Score=24.31 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCC--------CCCCCCHHHH-----HHHHHHHHHHHHcCCCeeEEecCC
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGL--------DITYSSGKEV-----ATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~--------~~~~s~~~d~-----~~L~~K~~ql~~lGvr~FailfDD 86 (166)
.+...++++.++++. ...|+. .-||- +-.|.+.+++ ++|..=+..|+++||+.+. +||
T Consensus 107 ~~~~~~~~~~~~~~~----~~~vK~---~ipgP~tl~~~~~~~~Y~~~~el~~dlA~al~~Ei~~L~~aG~~~IQ--iDe 177 (339)
T PRK09121 107 KPVFVEDAKFLRQQT----TQPIKW---ALPGPMTMIDTLYDDHYKSREKLAWEFAKILNQEAKELEAAGVDIIQ--FDE 177 (339)
T ss_pred CCCcHHHHHHHHhcc----CCCceE---EeCcHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE--ecc
Confidence 345556777777662 223444 34552 1235454432 4455668899999999854 887
Q ss_pred CC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-ceEccccc
Q psy629 87 IE-SEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPK-FMLCPTQY 129 (166)
Q Consensus 87 i~-~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~-l~~cPt~Y 129 (166)
-. ...+.+ ....-++.+|.+.+-.+..- +-+|...|
T Consensus 178 P~l~~~~~~-------~~~~~v~~~n~~~~g~~~~v~~HvC~G~~ 215 (339)
T PRK09121 178 PAFNVFFDE-------VNDWGVAALERAIEGLKCETAVHICYGYG 215 (339)
T ss_pred cHHhhhhHH-------HHHHHHHHHHHHHcCCCCceEEEEeCCCC
Confidence 55 223321 12344566788777665432 77898855
No 246
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=31.39 E-value=1.8e+02 Score=23.31 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
.+++++..+++.+++.+..-|-.... ...+.|.+.++++.++|++..=|
T Consensus 101 ~~~~~~~~~~~~~~kiI~S~H~f~~t-----p~~~~l~~~~~~~~~~gadivKl 149 (225)
T cd00502 101 LLEELINSRKKGNTKIIGSYHDFSGT-----PSDEELVSRLEKMAALGADIVKI 149 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeccCCCC-----cCHHHHHHHHHHHHHhCCCEEEE
Confidence 47888888888899999988842222 13466778888999999766443
No 247
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=31.35 E-value=1.4e+02 Score=27.00 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEecC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.-|++++-.|.+.||+ .||||
T Consensus 214 yFL~~ViPvAEe~GV~--LAiHP 234 (394)
T TIGR00695 214 FFLQEILPVAEEYGVQ--MAIHP 234 (394)
T ss_pred HHHHHHHHHHHHcCCE--EEECC
Confidence 5788999999999987 57888
No 248
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=31.16 E-value=1.4e+02 Score=27.14 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecC--CCCCCCC--CHHHHHHHHHHHH-HHHHcCCCeeEEecCCCCCC--CCHHHHHH
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSP--GLDITYS--SGKEVATLKRKLE-QVAQFGCRGFALLFDDIESE--MSEADKEV 98 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisP--G~~~~~s--~~~d~~~L~~K~~-ql~~lGvr~FailfDDi~~~--~~~~d~~~ 98 (166)
|-..|.-|.++-+++|.+..|-|-| |.=++|. +.+-+++..+|+. ||.+.|.+++|=+=||=... +.+.-
T Consensus 293 Ey~Dlqlll~~f~kagadv~FV~~PvNgkW~dYtG~~k~~~q~~y~Kik~Ql~sqGF~~iaDfs~~~~epyfm~DtI--- 369 (415)
T COG3966 293 EYQDLQLLLDTFKKAGADVIFVIIPVNGKWYDYTGLNKDGRQAYYKKIKSQLRSQGFTQIADFSDDGYEPYFMKDTI--- 369 (415)
T ss_pred ccccHHHHHHHHHhcCCCeEEEecCCCCceecccCcCHHHHHHHHHHHHHHHHHcCceeehhhhccCCCcceeccce---
Confidence 5678899999999999999999999 5444554 3567888888885 89999999988544442211 11110
Q ss_pred HhhHH-HHHHHHHHHHHHHcCCCC-c----eEcccccccccc
Q psy629 99 FQSFA-HAQVSVTNEVFEHLGQPK-F----MLCPTQYCSTRA 134 (166)
Q Consensus 99 f~~~a-~aq~~l~n~v~~~l~~~~-l----~~cPt~Y~~~~~ 134 (166)
++| ..=+++-..|...++.++ - +-.+..|+.+|+
T Consensus 370 --HlGWkGWv~~Dkai~~F~ktp~~~~ny~~~n~~f~sk~wa 409 (415)
T COG3966 370 --HLGWKGWVAFDKAIAKFMKTPPQTPNYKPNNERFYSKDWA 409 (415)
T ss_pred --eecchhHHHHHHHHHHHhcCCCCCCCcCcCchhhhhcccc
Confidence 011 122444555666666542 1 123556777764
No 249
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=31.07 E-value=88 Score=27.29 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEe-cCCCCCC------------C---------CCHHHHHHHHHHHHH----HHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYAL-SPGLDIT------------Y---------SSGKEVATLKRKLEQ----VAQ 74 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai-sPG~~~~------------~---------s~~~d~~~L~~K~~q----l~~ 74 (166)
.|.++.+..+++|+++++++|...+.-| |+|..-. + =+.+|++.+++.|.+ ..+
T Consensus 74 ~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~ 153 (337)
T PRK13523 74 IWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE 153 (337)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999887 4454211 0 135788888888765 345
Q ss_pred cCCCeeEEec
Q psy629 75 FGCRGFALLF 84 (166)
Q Consensus 75 lGvr~Failf 84 (166)
.|.+-.-|-.
T Consensus 154 aGfDgVeih~ 163 (337)
T PRK13523 154 AGFDVIEIHG 163 (337)
T ss_pred cCCCEEEEcc
Confidence 7777766643
No 250
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=31.04 E-value=4.6e+02 Score=24.76 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHH----CCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHH--------HcCCCeeEEecCC
Q psy629 25 EEAEHLTGLISAAKE----QGIDFYYALSPGLDITYSSGKEVATLKRKLEQVA--------QFGCRGFALLFDD 86 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~----~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~--------~lGvr~FailfDD 86 (166)
+..++|+++.+.|=+ ..+.++..||=|+|- .-+.+|.+|+..-. .-.+..|+|-|++
T Consensus 217 ~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDS-----SlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~ 285 (586)
T PTZ00077 217 IDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDS-----SIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEG 285 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEecCCchH-----HHHHHHHHHhhcccccccccccCCCceEEEcCCCC
Confidence 345677777766633 578999999999982 34666776653200 0247889998875
No 251
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.97 E-value=66 Score=27.09 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCCeeEEe
Q psy629 62 VATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~Fail 83 (166)
+..+.+-++.|+++|+|.|.|.
T Consensus 163 v~~i~~~v~~L~~~GAr~~~v~ 184 (315)
T cd01837 163 VSNISSAIKRLYDLGARKFVVP 184 (315)
T ss_pred HHHHHHHHHHHHhCCCcEEEec
Confidence 5677788999999999999875
No 252
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.88 E-value=1.4e+02 Score=25.27 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGL 52 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~ 52 (166)
++..++.+.|+++|+.+++.++|..
T Consensus 131 ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 131 EESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCC
Confidence 5577888999999999999999953
No 253
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.70 E-value=2.2e+02 Score=24.27 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=6.2
Q ss_pred hccCCCceEEe
Q psy629 149 SKLAKEIDIMW 159 (166)
Q Consensus 149 ~~L~~~i~i~W 159 (166)
+.|++++.|+-
T Consensus 249 ~~l~~~~~i~R 259 (302)
T TIGR01212 249 EHLPPEVVIHR 259 (302)
T ss_pred HhCCcCeEEEE
Confidence 45566655554
No 254
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.67 E-value=2e+02 Score=23.84 Aligned_cols=54 Identities=28% Similarity=0.360 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeE-EEEecCCCCCCCCCHHHHHHHHHHHHHHHHc-CCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDF-YYALSPGLDITYSSGKEVATLKRKLEQVAQF-GCR 78 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~F-v~aisPG~~~~~s~~~d~~~L~~K~~ql~~l-Gvr 78 (166)
++.++.++++++.+.+.||.- =+-|=||..+-= +.++--.+++.++.+..+ |+-
T Consensus 146 ~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~~~~~g~P 201 (258)
T cd00423 146 DEVVEFLEERVEAATEAGIPPEDIILDPGIGFGK-TEEHNLELLRRLDAFRELPGLP 201 (258)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccC-CHHHHHHHHHHHHHHHhcCCCc
Confidence 345789999999999999843 455678886422 344455788999999988 766
No 255
>PRK08227 autoinducer 2 aldolase; Validated
Probab=30.59 E-value=2.3e+02 Score=24.12 Aligned_cols=56 Identities=13% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
.+.+++|.+++++|++.|+-.+. +.| |..+. ++.+ .+..=-..-.+||.+..=+-+
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~--~~~~--~ia~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMV--RDAR--YFSLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcC--chHH--HHHHHHHHHHHHcCCEEecCC
Confidence 45688999999999999999665 888 77764 3333 444444556778877665444
No 256
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.47 E-value=1.9e+02 Score=24.52 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQF 75 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~l 75 (166)
+++-..|.+.|.+.||+=++|-|=-+.-.|.+. ++++..|++||.++
T Consensus 19 ~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~--~~~v~~~~~~ln~~ 65 (254)
T COG4464 19 LEESLAMLREAVRQGVTKIVATSHHLHGRYENP--IEKVKEKANQLNEI 65 (254)
T ss_pred HHHHHHHHHHHHHcCceEEeecccccCCccCCh--HHHHHHHHHHHHHH
Confidence 455567888999999999999887666677654 58888888888874
No 257
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=30.45 E-value=90 Score=22.81 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 53 DITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 53 ~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
+|.++ ++++++|-..+++..+-|++.=-|+.||+-
T Consensus 29 ~I~l~-~~~~~~i~~av~~A~~KG~kesLvl~~d~A 63 (96)
T TIGR02530 29 NISIN-PDDWKKLLEAVEEAESKGVKDSLILMNDAA 63 (96)
T ss_pred CCCCC-HHHHHHHHHHHHHHHhcCCCceEEEeCCEE
Confidence 35555 588999999999999999999999999965
No 258
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=30.39 E-value=85 Score=25.60 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCR 78 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr 78 (166)
+-.++|++++..|+++|--.++| ||.- +-+++|.+-+..+.+-||+
T Consensus 159 ~I~~ql~~~~~~A~~~G~aI~Ig-h~~p-------~Tl~~L~~~~~~l~~~gi~ 204 (213)
T PF04748_consen 159 AIRRQLDQAARIARKQGSAIAIG-HPRP-------ETLEALEEWLPELEAQGIE 204 (213)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEE-E-SC-------CHHHHHHHHHHHHHHCTEE
T ss_pred HHHHHHHHHHHhhhhcCcEEEEE-cCCH-------HHHHHHHHHHhHHhhCCEE
Confidence 34579999999999999666655 6632 3578888888888888875
No 259
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=30.29 E-value=3.6e+02 Score=23.32 Aligned_cols=97 Identities=7% Similarity=0.209 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCeEEEEecCCCC----------------------------------------CCCCCHHHHHHHHHHHH
Q psy629 31 TGLISAAKEQGIDFYYALSPGLD----------------------------------------ITYSSGKEVATLKRKLE 70 (166)
Q Consensus 31 ~~L~~~a~~~~v~Fv~aisPG~~----------------------------------------~~~s~~~d~~~L~~K~~ 70 (166)
++|++.-++.|++.+.-++|+.. ++|++++..+=...+++
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 67777777888888888877543 34455555565667777
Q ss_pred HHHH-cCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcC-CCCceEcccccccc
Q psy629 71 QVAQ-FGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLG-QPKFMLCPTQYCST 132 (166)
Q Consensus 71 ql~~-lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~-~~~l~~cPt~Y~~~ 132 (166)
++.+ .||+.|-.-+.+ ...- .+.-...+..+++.+-+..+... ..+++++-+.|.+.
T Consensus 149 ~~~~~~Gvdg~w~D~~E---p~~~--~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~ 207 (339)
T cd06602 149 DFHDQVPFDGLWIDMNE---PSNF--YDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS 207 (339)
T ss_pred HHHhcCCCcEEEecCCC---CchH--hhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc
Confidence 7655 799987633322 1110 00001123333333333333323 35688888877654
No 260
>PLN02784 alpha-amylase
Probab=30.27 E-value=2.6e+02 Score=28.16 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.++|++||++|+++||..+.=+-+
T Consensus 567 ~~ELk~LI~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 567 IDELKDLVKSFHEVGIKVLGDAVL 590 (894)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 478999999999999998776543
No 261
>PRK14847 hypothetical protein; Provisional
Probab=30.23 E-value=1e+02 Score=27.21 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=53.0
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCe-----EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGID-----FYYALSPGLDITYSSGKEVATLKRKLEQVAQF-GC 77 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~-----Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~l-Gv 77 (166)
-+|.|=.|...+.+++-. .++-++.+.+.++.|++.+.+ +.+.++|- | +| ..|.+-|++=++.+.+. |+
T Consensus 128 hi~~p~Sd~h~~~kl~~s-~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~E-D--as-Rad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 128 HLYNPIAPQWRRIVFGMS-RAEIKEIALAGTRQIRALADANPGTQWIYEYSPE-T--FS-LAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred EEEecCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhccccCCCceEEEEeee-c--CC-CCCHHHHHHHHHHHHHHhCC
Confidence 478888877666788743 444567899999999999542 34555552 2 22 24677788777776555 75
Q ss_pred CeeE---EecCC-CCCCCC
Q psy629 78 RGFA---LLFDD-IESEMS 92 (166)
Q Consensus 78 r~Fa---ilfDD-i~~~~~ 92 (166)
...+ |.+=| ++.-.+
T Consensus 203 ~r~~a~~i~l~DTVG~~~P 221 (333)
T PRK14847 203 TPQRKMIINLPATVESSTA 221 (333)
T ss_pred CccCCcEEEeCCccccCCH
Confidence 5433 43444 444334
No 262
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=30.19 E-value=77 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
++..++++.++++|++.+..++|..+
T Consensus 127 ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 127 EESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 56788999999999999999999543
No 263
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.19 E-value=1.4e+02 Score=26.20 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 40 QGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 40 ~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
.++.+.+-.+|.. + + ..+++.|.++||+.+.|-++..+.
T Consensus 88 ~~~eit~E~~P~~-~---~-------~~~l~~l~~~G~nrislGvQS~~~ 126 (370)
T PRK06294 88 HATEITLEANPEN-L---S-------ESYIRALALTGINRISIGVQTFDD 126 (370)
T ss_pred CCCeEEEEeCCCC-C---C-------HHHHHHHHHCCCCEEEEccccCCH
Confidence 4566777777732 1 1 256888889999999988777663
No 264
>PLN02591 tryptophan synthase
Probab=30.11 E-value=75 Score=26.71 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPG 51 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG 51 (166)
++..++.+.|+++|+++++.++|-
T Consensus 118 ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 118 EETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCC
Confidence 566788899999999999999994
No 265
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=29.98 E-value=99 Score=25.66 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHcCCCee
Q psy629 40 QGIDFYYALSPGLDITYS-SGKEVATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 40 ~~v~Fv~aisPG~~~~~s-~~~d~~~L~~K~~ql~~lGvr~F 80 (166)
.+.....+.+|..+-.-. .+.+++.|++|++. |+..|
T Consensus 127 ~~~~igva~yPe~hp~~~~~~~~~~~L~~Ki~a----GA~f~ 164 (274)
T cd00537 127 GGFSIGVAAYPEGHPEAPSLEEDIKRLKRKVDA----GADFI 164 (274)
T ss_pred CCCccccccCCCcCCCCCCHHHHHHHHHHHHHC----CCCEE
Confidence 466777788884433222 35677888888765 77544
No 266
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=29.93 E-value=1.7e+02 Score=24.91 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=60.7
Q ss_pred ccCCChhhhhhhccCCCHHHHHHHHHHHHH----HHHCCCeE--EEEecCCCCCCCCCHHHHHHHHHHHHHHHH-cCCCe
Q psy629 7 APKDDYKHRAYWRDLYSVEEAEHLTGLISA----AKEQGIDF--YYALSPGLDITYSSGKEVATLKRKLEQVAQ-FGCRG 79 (166)
Q Consensus 7 APKdDpyhr~~Wre~Yp~~~l~~l~~L~~~----a~~~~v~F--v~aisPG~~~~~s~~~d~~~L~~K~~ql~~-lGvr~ 79 (166)
++-.|||- -.+++..++.|+.|... |.+.|++. ..|+||+- + +.+++..+.++..+++ -+|-.
T Consensus 30 t~AhdP~~-----~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~-i----P~e~~~~l~~L~~~l~~e~VvA 99 (254)
T COG1099 30 TLAHDPYP-----MKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRA-I----PPELEEVLEELEELLSNEDVVA 99 (254)
T ss_pred hcccCCCC-----cccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCC-C----CchHHHHHHHHHhhcccCCeeE
Confidence 34456654 35678888999998754 66666653 45667732 1 2347888888888877 33333
Q ss_pred eEEecCCCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccc
Q psy629 80 FALLFDDIE-SEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPT 127 (166)
Q Consensus 80 FailfDDi~-~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt 127 (166)
+-.|+ ...+++..+.| ..|.+|+ +.++.|-++..|.
T Consensus 100 ----iGEiGLe~~t~~E~evf----~~QL~LA----~e~dvPviVHTPr 136 (254)
T COG1099 100 ----IGEIGLEEATDEEKEVF----REQLELA----RELDVPVIVHTPR 136 (254)
T ss_pred ----eeecccccCCHHHHHHH----HHHHHHH----HHcCCcEEEeCCC
Confidence 44777 44566777777 4677665 3444444444443
No 267
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=29.78 E-value=52 Score=27.91 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCC---------------------------------CCCCCCHHHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALS-PGL---------------------------------DITYSSGKEVATLK 66 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais-PG~---------------------------------~~~~s~~~d~~~L~ 66 (166)
.|+.++ +++|++.|+++||+.|=-|- ||- .++.++++-++-+.
T Consensus 69 ~yT~~d---i~~lv~yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~ 145 (351)
T PF00728_consen 69 YYTKED---IRELVAYAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLK 145 (351)
T ss_dssp EBEHHH---HHHHHHHHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHH
T ss_pred cCCHHH---HHHHHHHHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHH
Confidence 677655 67889999999999997652 331 13444566677676
Q ss_pred HHHHHHHHc-CCCeeEEecCCCCCC---CCHHHHH-----HHhhHHHHHHHHHHHHHHHcCC
Q psy629 67 RKLEQVAQF-GCRGFALLFDDIESE---MSEADKE-----VFQSFAHAQVSVTNEVFEHLGQ 119 (166)
Q Consensus 67 ~K~~ql~~l-Gvr~FailfDDi~~~---~~~~d~~-----~f~~~a~aq~~l~n~v~~~l~~ 119 (166)
.=++++.++ .-+.|-|-.|.+... .+++-++ .+.+....+...+|++.+.+..
T Consensus 146 ~l~~e~~~~f~~~~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~ 207 (351)
T PF00728_consen 146 DLLDEVADLFPSKYIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKK 207 (351)
T ss_dssp HHHHHHHHHHTSSEEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCeEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHh
Confidence 667777765 688899999999842 1221111 1224567788888888876644
No 268
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=29.75 E-value=76 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCCCCCCHHH----HHHHHHHHHHHHHcCCCee
Q psy629 31 TGLISAAKEQGIDFYYALSPGLDITYSSGKE----VATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 31 ~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d----~~~L~~K~~ql~~lGvr~F 80 (166)
..|++.|++..-..++++-|.-.- |...+| ...+-+|++.|.++||+.+
T Consensus 38 ~~LI~~a~~~a~~vVvtf~~nP~q-f~~~ed~~~y~~t~e~d~~ll~~~GvD~v 90 (277)
T cd00560 38 LSLVRRARAENDVVVVSIFVNPLQ-FGPNEDLDRYPRTLEADLALLEEAGVDLL 90 (277)
T ss_pred HHHHHHHHHhCCEEEEEecCChhh-cCCcccccccCCCHHHHHHHHHHCCCCEE
Confidence 356677766666677777663221 333333 3447889999999999874
No 269
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]
Probab=29.75 E-value=65 Score=30.07 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEecCCCCCCC
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLFDDIESEM 91 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~FailfDDi~~~~ 91 (166)
|++....-+++++++||| +..||.+...
T Consensus 531 df~q~r~~l~~l~~lGvr---~aLDDFGTGy 558 (663)
T COG5001 531 DFDQARDALAALHELGVR---TALDDFGTGY 558 (663)
T ss_pred cHHHHHHHHHHHHHhCcc---eeeccccccc
Confidence 677888889999999998 5689988543
No 270
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=29.73 E-value=1.1e+02 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 22 YSVEEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
-++++.+.|.+|.+.+.+.||.|.|..++
T Consensus 65 ~~~~Q~~~l~~i~~sl~~~gI~~~~~f~~ 93 (148)
T cd02685 65 NGKQQIEALEEIKQSLASHGVEFTWEFSD 93 (148)
T ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence 35666777777777777888887777775
No 271
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=29.51 E-value=2.3e+02 Score=20.75 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
.+++.|.+--+.-.+.+|.++.-..+|.......-. ..+...+.+-+.++.+.|.+.+=+=+|
T Consensus 27 ~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~--~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 27 QQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLS--PEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred HHHHHHHhhhhccccCceEEEEEeCCccccccCcCC--HHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 455666664445578888888888886644322111 244555666677888999887755443
No 272
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.44 E-value=3.1e+02 Score=24.99 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=44.6
Q ss_pred hhhccC-CCHHHHHHHHHHHHHHHHCCCeEE-EEecCCCCCCCCC------HHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 16 AYWRDL-YSVEEAEHLTGLISAAKEQGIDFY-YALSPGLDITYSS------GKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 16 ~~Wre~-Yp~~~l~~l~~L~~~a~~~~v~Fv-~aisPG~~~~~s~------~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
..|+.+ +++++++++++++ +++|+... +.+|-...++..+ +..++.|.+=++....+|++...+----
T Consensus 166 r~w~~~~~~~~~~~~f~~~~---~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs 241 (413)
T PTZ00372 166 RTWNSPPLSDETIDKFKENC---KKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGS 241 (413)
T ss_pred ccCCCCCCCHHHHHHHHHHH---HHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 358665 8887777776655 45655421 2234434477765 2357788889999999999988875433
No 273
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.33 E-value=75 Score=26.16 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGL 52 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~ 52 (166)
+++.++++.++++|++.+..++|..
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4788999999999999999999954
No 274
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=29.29 E-value=40 Score=26.14 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHCCCeE-EEEecC--CCCCC-CCCHHHHHHHHHHHHHHHHcCCCeeE-EecCC-CCCCCCHHHHHHHh
Q psy629 27 AEHLTGLISAAKEQGIDF-YYALSP--GLDIT-YSSGKEVATLKRKLEQVAQFGCRGFA-LLFDD-IESEMSEADKEVFQ 100 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~F-v~aisP--G~~~~-~s~~~d~~~L~~K~~ql~~lGvr~Fa-ilfDD-i~~~~~~~d~~~f~ 100 (166)
.+-|+++++.|++.+..- ++...| -.-+. -.....+-.+..|++.|.++||...- +-|+. +.. +..+
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~~-ls~~------ 94 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTEEFAN-LSPE------ 94 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCCHHCC-S-HH------
T ss_pred HHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchHHHHc-CCHH------
Confidence 467889999999998543 345544 11111 11223466778899999999999854 44764 333 3321
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceE
Q psy629 101 SFAHAQVSVTNEVF-EHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDI 157 (166)
Q Consensus 101 ~~a~aq~~l~n~v~-~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i 157 (166)
.++..+. +.++.. -++|-..|.--. ...++...|+.+++.+.=+|.|
T Consensus 95 -------~Fi~~iL~~~l~~~-~ivvG~DfrFG~--~~~G~~~~L~~~~~~~g~~v~~ 142 (157)
T PF06574_consen 95 -------DFIEKILKEKLNVK-HIVVGEDFRFGK--NRSGDVELLKELGKEYGFEVEV 142 (157)
T ss_dssp -------HHHHHHCCCHCTEE-EEEEETT-EESG--GGEEEHHHHHHCTTTT-SEEEE
T ss_pred -------HHHHHHHHhcCCcc-EEEEccCccCCC--CCCCCHHHHHHhcccCceEEEE
Confidence 1222222 234433 344555543321 1124678888888766544433
No 275
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=29.23 E-value=2.6e+02 Score=23.75 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHCCCeEE--EEecCCCCCCCC-------CHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 29 HLTGLISAAKEQGIDFY--YALSPGLDITYS-------SGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv--~aisPG~~~~~s-------~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
++.+.++++.+.||.++ .+|.|--...+. ++++.+.++++...+.++|+.. |++.=+
T Consensus 118 ~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~--i~lE~v 183 (264)
T PRK00311 118 EVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFA--LVLECV 183 (264)
T ss_pred HHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCE--EEEcCC
Confidence 45566777778899985 788884432211 3566899999999999999854 555444
No 276
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.13 E-value=1e+02 Score=27.33 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=45.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEe-cCCCCCC-----------------------C---CCHHHHHHHHHHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYAL-SPGLDIT-----------------------Y---SSGKEVATLKRKLEQV 72 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai-sPG~~~~-----------------------~---s~~~d~~~L~~K~~ql 72 (166)
..|+++.+..|++|+++++++|..++.-| |+|-... . =+.++++.+++.|-+-
T Consensus 70 ~~~~d~~i~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~A 149 (361)
T cd04747 70 RFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARA 149 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999887 4453100 0 1346788888887653
Q ss_pred ----HHcCCCeeEEe
Q psy629 73 ----AQFGCRGFALL 83 (166)
Q Consensus 73 ----~~lGvr~Fail 83 (166)
.++|.+-.-|-
T Consensus 150 A~~a~~aGfDgVeih 164 (361)
T cd04747 150 AADARRLGFDGIELH 164 (361)
T ss_pred HHHHHHcCCCEEEEe
Confidence 44676666554
No 277
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.08 E-value=2.5e+02 Score=22.53 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHHHH----HcCCCeeEE
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLD-ITYSSGKEVATLKRKLEQVA----QFGCRGFAL 82 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~-~~~s~~~d~~~L~~K~~ql~----~lGvr~Fai 82 (166)
.+.+++.++.|++.|+..+. +.+|.. -..+.++..+.+.+.+.++. +.||+ +++
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~-~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~l 141 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVN-CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLT-LLI 141 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEE-ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEE
Confidence 57899999999999999775 556643 22233444455555555543 35665 443
No 278
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=29.03 E-value=2.8e+02 Score=21.64 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 62 VATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
...-..-.+.|.+.|.+.++++.....
T Consensus 97 ~~~g~~~~~~l~~~g~~~i~~i~~~~~ 123 (265)
T cd06291 97 YEGGRLAAEELIERGCKHIAHIGGPNN 123 (265)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEccCcc
Confidence 344455557788899999999876544
No 279
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=28.75 E-value=3.5e+02 Score=23.41 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC---------------CCCCCHHHHHHHHHHHH--------HHHHc-CCCeeEEe
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLD---------------ITYSSGKEVATLKRKLE--------QVAQF-GCRGFALL 83 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~---------------~~~s~~~d~~~L~~K~~--------ql~~l-Gvr~Fail 83 (166)
+.-+.=+.....+++ |+-+-+||-- ..+..++.+.+|+.++. ...+. |+..+.+
T Consensus 98 ~~~~~~~~~~~r~~~-~~~~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i- 175 (321)
T cd03309 98 APARADLQSLDRNDL-VIDVPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVY- 175 (321)
T ss_pred hhhHHHHHhcccccc-eeccCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE-
Confidence 333444445556666 6666666421 12234567788887774 33444 9997654
Q ss_pred cCCCCCC----CCHHHHHHHhhHHHHHHHHHHHHHHH
Q psy629 84 FDDIESE----MSEADKEVFQSFAHAQVSVTNEVFEH 116 (166)
Q Consensus 84 fDDi~~~----~~~~d~~~f~~~a~aq~~l~n~v~~~ 116 (166)
|||..+. ++.++.+.|--. ...+++..+.+.
T Consensus 176 ~Ddwa~~~~~~LSpe~f~efv~P--~~krIi~~ik~~ 210 (321)
T cd03309 176 HDDLGSQKGSFISPATFREFILP--RMQRIFDFLRSN 210 (321)
T ss_pred eCCCccccCCccCHHHHHHHHHH--HHHHHHHHHHhc
Confidence 7998865 677776665322 234555555443
No 280
>PTZ00124 adenosine deaminase; Provisional
Probab=28.60 E-value=2.1e+02 Score=25.24 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=16.5
Q ss_pred CCCceEccccccccccCCCCCChhHH
Q psy629 119 QPKFMLCPTQYCSTRAVPNVKNSEYL 144 (166)
Q Consensus 119 ~~~l~~cPt~Y~~~~~~~~~~~~~Yl 144 (166)
..++-+|||..-...+.++....+..
T Consensus 270 ~I~lEvCPtSN~~~~~v~~~~~HPi~ 295 (362)
T PTZ00124 270 DILLEVCPISNVLLNNAKSMDTHPIR 295 (362)
T ss_pred CCeEEECCcchhhhhcCCchhhHHHH
Confidence 35699999988766555544434433
No 281
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=28.41 E-value=96 Score=30.18 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=46.0
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 16 AYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 16 ~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
..|-++|..+-+..++..+++|+++|+...+|=-=.- ++. -+--|..+|+|+|++--.-|.
T Consensus 637 ~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~-----dp~-------~~~~L~glGi~~lS~~~~~i~ 697 (748)
T PRK11061 637 ASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAG-----DPM-------GALLLIGLGYRHLSMNGRSVA 697 (748)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCccc-----CHH-------HHHHHHHCCCcEEccChHHHH
Confidence 5688899999999999999999999998877622111 111 124678999999998766655
No 282
>PLN02808 alpha-galactosidase
Probab=28.30 E-value=4.4e+02 Score=23.71 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCC---CCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDIT---YSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE 90 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~---~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~ 90 (166)
.-|+.|++..++.|++|++=..+|...| +....+.+.. =.+++.+-||+..= .|.+...
T Consensus 97 ~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~--DA~~fA~WGvDylK--~D~C~~~ 158 (386)
T PLN02808 97 SGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQ--DAKTFASWGIDYLK--YDNCENT 158 (386)
T ss_pred ccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHH--HHHHHHHhCCCEEe--ecCcCCC
Confidence 4699999999999999999999998777 2211222222 23567799999876 7887644
No 283
>PRK00035 hemH ferrochelatase; Reviewed
Probab=28.21 E-value=3.8e+02 Score=22.87 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHH
Q psy629 65 LKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYL 144 (166)
Q Consensus 65 L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl 144 (166)
+-.-+++|.+.||+.+.|+==-.-.... +.++....+.+.+.++....++.+++..+.. ..|+
T Consensus 107 i~eal~~l~~~G~~~IivlPL~p~~s~~--------t~gs~~~~i~~~~~~~~~~~~i~~i~~~~~~---------p~~i 169 (333)
T PRK00035 107 IEEALEALKADGVDRIVVLPLYPQYSYS--------TTASYFEDLARALAKLRLQPEIRFIRSYYDH---------PGYI 169 (333)
T ss_pred HHHHHHHHHhcCCCEEEEEECCCccccc--------cHHHHHHHHHHHHHhcCCCCcEEEeCCccCC---------HHHH
Confidence 4456788888999998776111111100 1233333444334333334668888877653 4465
Q ss_pred HHHhhcc-------C---CCceEEeeCCCC
Q psy629 145 NTLGSKL-------A---KEIDIMWTGPKV 164 (166)
Q Consensus 145 ~~l~~~L-------~---~~i~i~WTG~~V 164 (166)
+.+.+.+ + ++..+.++|-++
T Consensus 170 ~~l~~~I~~~~~~~~~~~~~~~llfs~HG~ 199 (333)
T PRK00035 170 EALAESIREALAKHGEDPEPDRLLFSAHGL 199 (333)
T ss_pred HHHHHHHHHHHHhcCcccCCcEEEEecCCC
Confidence 5554433 2 347788888664
No 284
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=28.16 E-value=1.8e+02 Score=21.86 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGL 52 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~ 52 (166)
..++..|.+|.+..++.++.| ++|++.-
T Consensus 41 ~~~~~~l~~l~~~~~~~~v~~-v~is~d~ 68 (171)
T cd02969 41 KAIEDRLNRLAKEYGAKGVAV-VAINSND 68 (171)
T ss_pred HHHHHHHHHHHHHHhhCCeEE-EEEecCc
Confidence 456778888888877778886 7787743
No 285
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=28.14 E-value=1.2e+02 Score=27.16 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCCeEEEEecC--------CCCCCCCCHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSP--------GLDITYSSGKEVATLKRKLEQ 71 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisP--------G~~~~~s~~~d~~~L~~K~~q 71 (166)
-|++.+=.|.++||+ .|||| |+.---|+.++++.|++-.++
T Consensus 193 FL~~ViPVAEe~gVk--maiHPDDPP~pi~GLpRIvst~ed~~~ll~~vdS 241 (362)
T COG1312 193 FLKEVIPVAEEVGVK--MAIHPDDPPWPIFGLPRIVSTIEDYQRLLEMVDS 241 (362)
T ss_pred HHHhhcchHHhcCce--EEeCCCCCCccccCcchhcCCHHHHHHHHHhccC
Confidence 567888899999987 68999 554344566776666554443
No 286
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=28.11 E-value=2.2e+02 Score=22.22 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=14.7
Q ss_pred HHHHHcCCCeeEEecCCCC
Q psy629 70 EQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 70 ~ql~~lGvr~FailfDDi~ 88 (166)
+.|.+.|.+.++++...-.
T Consensus 110 ~~l~~~G~~~i~~i~~~~~ 128 (269)
T cd06275 110 RHLIELGHRRIGCITGPLE 128 (269)
T ss_pred HHHHHCCCceEEEEeCCCC
Confidence 5678899999999865443
No 287
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.09 E-value=2.7e+02 Score=22.70 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCCCeEE
Q psy629 28 EHLTGLISAAKEQGIDFY 45 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv 45 (166)
+.++..++.|++.|+.++
T Consensus 99 ~~~~~~i~~a~~lG~~~i 116 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVI 116 (283)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 344445555555555544
No 288
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=28.01 E-value=2.9e+02 Score=21.44 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=55.7
Q ss_pred HHHHHCCCeEEEEecC--CCC-CCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHH-HHHHhhHHHHH----
Q psy629 35 SAAKEQGIDFYYALSP--GLD-ITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEAD-KEVFQSFAHAQ---- 106 (166)
Q Consensus 35 ~~a~~~~v~Fv~aisP--G~~-~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d-~~~f~~~a~aq---- 106 (166)
+.+++.|+.++.--.+ +.. +..++ .+.-..=.+.|.+.|.+.++++-..-.......+ .+.|.......
T Consensus 72 ~~~~~~~ipvv~~~~~~~~~~~v~~d~---~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~ 148 (259)
T cd01542 72 EAIKKLNVPVVVVGQDYPGISSVVYDD---YGAGYELGEYLAQQGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICP 148 (259)
T ss_pred HHHhcCCCCEEEEeccCCCCCEEEECc---HHHHHHHHHHHHHcCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCCh
Confidence 4445556766655443 221 22222 2344444567777999999987532111111111 12333211100
Q ss_pred H-------------HHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEee
Q psy629 107 V-------------SVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWT 160 (166)
Q Consensus 107 ~-------------~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WT 160 (166)
. ..+.++.+..+ +..++|++....-. --.+++..|...|.+|.|+=-
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~~~~d~~a~g------~~~~l~~~g~~vp~di~v~g~ 208 (259)
T cd01542 149 PNIVETDFSYESAYEAAQELLEPQP-PDAIVCATDTIALG------AMKYLQELGRRIPEDISVAGF 208 (259)
T ss_pred HHeeeccCchhhHHHHHHHHhcCCC-CCEEEEcCcHHHHH------HHHHHHHcCCCCCCceEEEec
Confidence 0 11112222122 56788887654322 235677777777778877633
No 289
>PRK10812 putative DNAse; Provisional
Probab=28.00 E-value=2.6e+02 Score=23.33 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHC-CCeEEEEecC
Q psy629 28 EHLTGLISAAKEQ-GIDFYYALSP 50 (166)
Q Consensus 28 ~~l~~L~~~a~~~-~v~Fv~aisP 50 (166)
+..++..+.|+.. +|...+||||
T Consensus 45 ~~~~~~~~l~~~~~~v~~~~GiHP 68 (265)
T PRK10812 45 PGYRHMRDLVGERDNVVFSCGVHP 68 (265)
T ss_pred HHHHHHHHHHhhCCCeEEEEEeCC
Confidence 4444455555554 6888999999
No 290
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=27.89 E-value=72 Score=31.90 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEec
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALS 49 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais 49 (166)
.|.+.+.+++||+||++++++|++.+.=+-
T Consensus 396 dp~g~~Ri~Efk~mV~alH~~Gi~VIlDVV 425 (898)
T TIGR02103 396 DPEGPARIKEFREMVQALNKTGLNVVMDVV 425 (898)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCEEEEEee
Confidence 455667789999999999999999876543
No 291
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.63 E-value=1.7e+02 Score=24.74 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee-----EEecCCCCCCCCHHH
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF-----ALLFDDIESEMSEAD 95 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F-----ailfDDi~~~~~~~d 95 (166)
-+++++.++++|-++|+. |-|--.|+ ++.+..-++-..+.||..+ +-..|--.+....+|
T Consensus 162 ~leE~~avA~aca~~g~~----lEPTGGId------l~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~Trped 226 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFY----LEPTGGID------LDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVED 226 (236)
T ss_pred cHHHHHHHHHHHHHcCCc----cCCCCCcc------HHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHH
Confidence 468999999999999953 69933332 2333444556788999874 333444444444444
No 292
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.53 E-value=1.1e+02 Score=26.34 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=44.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCC----------------------CCC-----CHHHHHHHHHHHHH
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSP-GLDI----------------------TYS-----SGKEVATLKRKLEQ 71 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~----------------------~~s-----~~~d~~~L~~K~~q 71 (166)
..|.++.+..|++|++++++.|..++.-|.- |-.- .+. +.++++.+++.|.+
T Consensus 74 ~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~ 153 (338)
T cd04733 74 VLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAH 153 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998776543 2210 000 24567777766654
Q ss_pred ----HHHcCCCeeEEe
Q psy629 72 ----VAQFGCRGFALL 83 (166)
Q Consensus 72 ----l~~lGvr~Fail 83 (166)
..+.|.+-.-|-
T Consensus 154 aA~ra~~aGfDgVeih 169 (338)
T cd04733 154 AARLAQEAGFDGVQIH 169 (338)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 455777777664
No 293
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=27.47 E-value=1.8e+02 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPG 51 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG 51 (166)
++-.+.|.++++.+++.|+..++ ++|.
T Consensus 90 ~~~~~nl~~ii~~~~~~~~~~il-~tp~ 116 (198)
T cd01821 90 TTYKEYLRRYIAEARAKGATPIL-VTPV 116 (198)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEE-ECCc
Confidence 44568999999999999999887 5553
No 294
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=27.47 E-value=90 Score=29.09 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=29.2
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 44 FYYALSPG--LDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 44 Fv~aisPG--~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.+|-|.|. .+-+-+...|++.+++||+.|.++||+..-|.
T Consensus 12 v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~ 53 (551)
T PRK10933 12 VIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLT 53 (551)
T ss_pred eEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEEC
Confidence 56777772 22222224689999999999999999998763
No 295
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.42 E-value=2.5e+02 Score=28.33 Aligned_cols=60 Identities=18% Similarity=0.358 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC---CC--C---CCCC-CHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSP---GL--D---ITYS-SGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisP---G~--~---~~~s-~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
+-++.|+++|+.+++.||.++=.|=| |- . -+|. ...+-.+|+..|+.|.+-=. +| |+||.
T Consensus 805 ~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~g~~rs~a~~~~~~~~~~~~~y~-~f-~~~de 873 (912)
T TIGR02171 805 ENMNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRYGPRRSIAKKIIDSFKKMEKTYP-HF-ILFDE 873 (912)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccccCcchhhHHHHHHHHHHHHhhCC-ce-EEEec
Confidence 34789999999999999999888766 32 1 1222 12345778888888875432 33 45554
No 296
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=27.39 E-value=3.8e+02 Score=22.61 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHC-CCeEEEEecCCCCCCCC-CHHHHHHHHHHHH
Q psy629 28 EHLTGLISAAKEQ-GIDFYYALSPGLDITYS-SGKEVATLKRKLE 70 (166)
Q Consensus 28 ~~l~~L~~~a~~~-~v~Fv~aisPG~~~~~s-~~~d~~~L~~K~~ 70 (166)
+.++...+.|++. +|-...|+||-. .+. ++++++.|.+.+.
T Consensus 42 ~~~~~~~~la~~y~~v~~~~G~HP~~--~~~~~~~~~~~l~~~~~ 84 (256)
T COG0084 42 EDFKRALELAEKYPNVYAAVGVHPLD--ADEHSEEDLEELEQLAE 84 (256)
T ss_pred HHHHHHHHHHHhCCCeEEEEeeCCCc--cccccHHHHHHHHHHHh
Confidence 3334444444443 599999999966 332 2455555555444
No 297
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=27.32 E-value=1.4e+02 Score=24.33 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHH--HHHHHHH
Q psy629 30 LTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLK--RKLEQVA 73 (166)
Q Consensus 30 l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~--~K~~ql~ 73 (166)
+++.++.+++.|+..+.+|.|..++ ++++.++ ..++++.
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~~-----e~l~~~l~~~~vD~Vl 143 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTPV-----EVLFPLIDTDLVDMVL 143 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCH-----HHHHHHHccchhhhHH
Confidence 7888899999999999999996643 5555555 5555554
No 298
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=27.27 E-value=3e+02 Score=21.42 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCeEEEEec--CCCC---CCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 31 TGLISAAKEQGIDFYYALS--PGLD---ITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 31 ~~L~~~a~~~~v~Fv~ais--PG~~---~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
.++++.+++.|+.++.-=+ |+.. +..++ . +.-..=.+.|.+.|.+..+++..+.+
T Consensus 70 ~~~~~~~~~~~ipvv~i~~~~~~~~~~~V~~d~-~--~~g~~a~~~l~~~g~~~i~~i~~~~~ 129 (270)
T cd01545 70 PELLDLLDEAGVPYVRIAPGTPDPDSPCVRIDD-R--AAAREMTRHLIDLGHRRIAFIAGPPD 129 (270)
T ss_pred cHHHHHHHhcCCCEEEEecCCCCCCCCeEEecc-H--HHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 3455667778888765432 3322 22222 2 22233344567789999999875443
No 299
>PRK05409 hypothetical protein; Provisional
Probab=27.25 E-value=4e+02 Score=22.87 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CC------CCCCCCHHHHHHHHHHHHHHHH-cCCCeeEEecCCCCCCC-
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSP-GL------DITYSSGKEVATLKRKLEQVAQ-FGCRGFALLFDDIESEM- 91 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~------~~~~s~~~d~~~L~~K~~ql~~-lGvr~FailfDDi~~~~- 91 (166)
+...+-+++++.|++..+..-|.=..+.+- |. .+.|+ ++.++.+.++++++++ +|. . |+.-.++.-+
T Consensus 72 ~ld~~~L~~l~~l~~~~~~~~vSeHL~~~~~g~~~~dLlPlP~T-~e~l~~v~~ri~~vQd~lgr-p--lllEN~s~yl~ 147 (281)
T PRK05409 72 PLDKDHLKRLKALADRYQPPLVSEHLAWSSDGGHLYDLLPLPYT-EEALDHVAERIRQVQDILGR-P--LLLENPSSYLA 147 (281)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeeeeeecCCCccCccCCCCCC-HHHHHHHHHHHHHHHHHhCC-C--eEEeccccccC
Confidence 344555667777776665544443333332 32 23443 4668888888888888 554 3 3344443221
Q ss_pred -CHHHHHHHhhHHHHHHHHHHHHHHHcCCCCc
Q psy629 92 -SEADKEVFQSFAHAQVSVTNEVFEHLGQPKF 122 (166)
Q Consensus 92 -~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l 122 (166)
+..+. -+..++++|.+..++.-|
T Consensus 148 ~~~~~m--------~E~eFl~el~~rtgc~lL 171 (281)
T PRK05409 148 FPDSEM--------SEWEFLNELAERTGCGLL 171 (281)
T ss_pred CCCCCC--------CHHHHHHHHHHhcCCCEE
Confidence 11110 145677888888877543
No 300
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=27.23 E-value=50 Score=30.16 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=25.5
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEec
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALS 49 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais 49 (166)
|-.+.---..+-+++|++++++.|++|++.+|
T Consensus 91 wnsvk~GpKrDlvgela~Avr~qGL~FGvy~s 122 (430)
T COG3669 91 WNSVKRGPKRDLVGELAKAVREQGLRFGVYLS 122 (430)
T ss_pred ccccccCCcccHHHHHHHHHHHcCCeeeEeec
Confidence 33333333567899999999999999999999
No 301
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=27.16 E-value=2.3e+02 Score=24.97 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=19.7
Q ss_pred ceEccc-cccccccCCCCCChhHHHHHhhccCCC--ceEEeeC
Q psy629 122 FMLCPT-QYCSTRAVPNVKNSEYLNTLGSKLAKE--IDIMWTG 161 (166)
Q Consensus 122 l~~cPt-~Y~~~~~~~~~~~~~Yl~~l~~~L~~~--i~i~WTG 161 (166)
.+-||- .||.....++. .....|.+.+... +.|=+||
T Consensus 329 v~aC~G~~~C~~~~~~t~---~~a~~l~~~~~~~~~~~i~vSG 368 (390)
T TIGR02435 329 IIACTGAPGCASALADTR---ADAEALAAYCEPTAPITVHLSG 368 (390)
T ss_pred EEECCCccccccchhhHH---HHHHHHHHHhcccCCcEEEEeC
Confidence 677887 68876554432 2222332222221 7777877
No 302
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.11 E-value=3.1e+02 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 62 VATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
.++-..=.+.|.+.|.+.++++-.+
T Consensus 101 ~~~~~~~~~~L~~~G~~~i~~i~~~ 125 (269)
T cd06293 101 EQGGRLATRHLARAGHRRIAFVGGP 125 (269)
T ss_pred HHHHHHHHHHHHHCCCceEEEEecC
Confidence 4445555566677899999988644
No 303
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=27.09 E-value=2.3e+02 Score=24.90 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCC--CeEEEEecCCCCC-------CCCCHHHHHHHHHHHHHHH---HcCCCeeEEe-cCCC
Q psy629 27 AEHLTGLISAAKEQG--IDFYYALSPGLDI-------TYSSGKEVATLKRKLEQVA---QFGCRGFALL-FDDI 87 (166)
Q Consensus 27 l~~l~~L~~~a~~~~--v~Fv~aisPG~~~-------~~s~~~d~~~L~~K~~ql~---~lGvr~Fail-fDDi 87 (166)
+++++.|.+.|++.| ++...-|-||++- -+ ..+++..+.+.+.++- =.|+.+|+-. +|+-
T Consensus 129 ~~~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~-~~~e~~~~~~~i~~l~~l~l~Githf~~~~~d~~ 201 (382)
T cd06811 129 LEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGF-PLEELPAVLAAIKALPGIRIAGLTSFPCFLYDEE 201 (382)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEEECCCCccccCcccee-cHHHHHHHHHHHHcCCCcEEEeEcccchhhcccC
Confidence 455566666666544 5677778898873 23 2455666666665542 2577777644 3433
No 304
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=26.63 E-value=2.9e+02 Score=21.05 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=30.4
Q ss_pred HHHHHHCCCeEEEEecCCC--CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 34 ISAAKEQGIDFYYALSPGL--DITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisPG~--~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
++.+++.||.++..-++.. .+.+-.....+....=.+.|.+.|.+..+++..+-.
T Consensus 71 ~~~~~~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~ 127 (264)
T cd06267 71 LEELAALGIPVVLVDRPLDGLGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPD 127 (264)
T ss_pred HHHHHHcCCCEEEecccccCCCCCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 5556778888776655421 222211111222233335566779999999876654
No 305
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=26.59 E-value=65 Score=24.85 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHCCCeEEEE
Q psy629 28 EHLTGLISAAKEQGIDFYYA 47 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~a 47 (166)
..+.||++.|++.||+|+-|
T Consensus 91 ~sl~eLl~~a~e~GVk~~AC 110 (148)
T PF13686_consen 91 PSLEELLEMAKELGVKFYAC 110 (148)
T ss_dssp --HHHHHHHHHHCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEe
Confidence 56899999999999999876
No 306
>KOG3424|consensus
Probab=26.37 E-value=1.2e+02 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629 41 GIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 41 ~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~ 79 (166)
+=-.|-.||||.... + ...|..||.+||..-.+.
T Consensus 21 KqmvvdvlHPG~a~v--s---K~EirEKla~mYkt~~d~ 54 (132)
T KOG3424|consen 21 KQMVVDVLHPGKANV--S---KTEIREKLAKMYKTTPDA 54 (132)
T ss_pred hheeEEEecCCCCCC--C---HHHHHHHHHHHhcCCcce
Confidence 334677899999764 2 256889999999875554
No 307
>PRK15000 peroxidase; Provisional
Probab=26.34 E-value=1.4e+02 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.|+..|.++.+.-++.|+. +++||.
T Consensus 52 ~El~~l~~~~~~f~~~g~~-vigvS~ 76 (200)
T PRK15000 52 SELIAFDKRYEEFQKRGVE-VVGVSF 76 (200)
T ss_pred HHHHHHHHHHHHHHHCCCE-EEEEEC
Confidence 3556666666666666665 556653
No 308
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=26.25 E-value=2.3e+02 Score=28.71 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC-------------------------------------CCCCCHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD-------------------------------------ITYSSGKEVATLKRKLEQ 71 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~-------------------------------------~~~s~~~d~~~L~~K~~q 71 (166)
..++|++.-++.|++.++-|.||.. .+|.+++..+=-...+++
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~ 321 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKD 321 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHH
Confidence 4578888889999999999999643 145555556666677788
Q ss_pred HHHcCCCeeEEe
Q psy629 72 VAQFGCRGFALL 83 (166)
Q Consensus 72 l~~lGvr~Fail 83 (166)
+.+.||+.|-+=
T Consensus 322 l~d~GVDG~W~D 333 (978)
T PLN02763 322 FVSNGVDGIWND 333 (978)
T ss_pred HhcCCCcEEEcc
Confidence 999999977654
No 309
>PLN00196 alpha-amylase; Provisional
Probab=26.19 E-value=84 Score=28.46 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.++|++|+++|+++||+.+.=+-+
T Consensus 91 ~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 91 EAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 478999999999999999877655
No 310
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=26.13 E-value=1e+02 Score=27.51 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCeEEEEecCCCCCCCCC--------------H-------HHHHHHHHHHHHHHHcCCC
Q psy629 21 LYSVEEAEHLTGLISAAK-EQGIDFYYALSPGLDITYSS--------------G-------KEVATLKRKLEQVAQFGCR 78 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~-~~~v~Fv~aisPG~~~~~s~--------------~-------~d~~~L~~K~~ql~~lGvr 78 (166)
++....+..|.++++.++ ...+.++...+....++|++ + =+.+.+.++++.+.+.|++
T Consensus 29 Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~ 108 (370)
T COG1060 29 LLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGIT 108 (370)
T ss_pred HhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCe
Confidence 344344566777777777 66666666666655444332 0 1468899999999999999
Q ss_pred eeEEecCCCC
Q psy629 79 GFALLFDDIE 88 (166)
Q Consensus 79 ~FailfDDi~ 88 (166)
..-+.+=.=+
T Consensus 109 Evli~gG~~p 118 (370)
T COG1060 109 EVLIVGGEHP 118 (370)
T ss_pred EEEEecCcCC
Confidence 9998865444
No 311
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=26.06 E-value=1.1e+02 Score=27.25 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcC--CCeeEEecCCCCCCCCHHHHHHHhhH-----HHHHHHHHHHHHHHcCCCCceEcccccccccc
Q psy629 62 VATLKRKLEQVAQFG--CRGFALLFDDIESEMSEADKEVFQSF-----AHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRA 134 (166)
Q Consensus 62 ~~~L~~K~~ql~~lG--vr~FailfDDi~~~~~~~d~~~f~~~-----a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~ 134 (166)
++.+...|++++.-| +|.++|-+.++..... .+...|... ...-..++.+|.+++|...+..=++.....|.
T Consensus 323 ~~~a~~ll~~~~~~~~~~r~~GV~~~~l~~~~~-~q~~LF~~~~~~~~~~~l~~~iD~i~~r~G~~~i~~a~~~~~~~w~ 401 (422)
T PRK03609 323 IAAATRALDAIWRDGHRYQKAGVMLGDFFSQGV-AQLNLFDDNAPRPGSEQLMKVLDTLNAKSGKGTLYFAGQGIAQQWQ 401 (422)
T ss_pred HHHHHHHHHHHhCCCCceEEeeEEEEeeccCCC-cCccCccccccccchHHHHHHHHHHHHhhCCCeEEECCCCCCCCcc
Confidence 455677888887666 9999999888863311 122224210 11223567888888888766665665555564
Q ss_pred CC-CCCChhHHHHHh
Q psy629 135 VP-NVKNSEYLNTLG 148 (166)
Q Consensus 135 ~~-~~~~~~Yl~~l~ 148 (166)
.. +..+..|.+..+
T Consensus 402 ~~~~~~s~~ytt~~~ 416 (422)
T PRK03609 402 MKREMLSPRYTTRWS 416 (422)
T ss_pred CchhhcCCCCCCCHH
Confidence 32 334556666654
No 312
>PRK13189 peroxiredoxin; Provisional
Probab=25.89 E-value=3.3e+02 Score=22.04 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
.+|+..|.++.+.-++.|+. +++||. ++...-.+-.+.+..-...++ .|-|+.|
T Consensus 52 ~tEl~~l~~~~~ef~~~~v~-VigvS~------D~~~~h~aw~~~~~~~~g~~i-~fPllsD 105 (222)
T PRK13189 52 TTEFVAFQKRYDEFRELNTE-LIGLSI------DQVFSHIKWVEWIKEKLGVEI-EFPIIAD 105 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCE-EEEEEC------CCHHHHHHHHHhHHHhcCcCc-ceeEEEc
No 313
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=25.85 E-value=4.3e+02 Score=22.75 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCeEEEE--ecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec-CCCCCCCCHHHHHHHhhHHHH
Q psy629 29 HLTGLISAAKEQGIDFYYA--LSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF-DDIESEMSEADKEVFQSFAHA 105 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~a--isPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf-DDi~~~~~~~d~~~f~~~a~a 105 (166)
..++-++..++.||.+... |.+|.+ ++.+++..| ++.+.++||+-+.++. |.+++... |.-..+.
T Consensus 221 ~~~~ai~~L~~~Gi~v~~qtvllkgiN---Dn~~~l~~L---~~~l~~~gv~pyyl~~~~p~gg~~~------f~v~~~~ 288 (321)
T TIGR03821 221 EVADALAKLRNAGITLLNQSVLLRGVN---DNADTLAAL---SERLFDAGVLPYYLHLLDKVQGAAH------FDVDDER 288 (321)
T ss_pred HHHHHHHHHHHcCCEEEecceeeCCCC---CCHHHHHHH---HHHHHHcCCeeCcccccCCCCCccc------ccCCHHH
Confidence 3555556666666665322 222221 123344444 4555578998888764 55554211 2222233
Q ss_pred HHHHHHHHHHHcCC
Q psy629 106 QVSVTNEVFEHLGQ 119 (166)
Q Consensus 106 q~~l~n~v~~~l~~ 119 (166)
..+++..+.++++.
T Consensus 289 ~~~i~~~l~~~~sG 302 (321)
T TIGR03821 289 ARALMAELLARLPG 302 (321)
T ss_pred HHHHHHHHHHhCCC
Confidence 45677777777765
No 314
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=25.84 E-value=1.4e+02 Score=21.75 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHcCCCe
Q psy629 62 VATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~ 79 (166)
++..++.++.+.+.|++.
T Consensus 124 ~~~~~~~i~~~~~~~~~~ 141 (204)
T cd01335 124 FKERLEALKELREAGLGL 141 (204)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 344444444444444443
No 315
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=25.83 E-value=4.1e+02 Score=22.52 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHH
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVA 73 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~ 73 (166)
...+|.+=|+.|++.|++...+|== +.+..++++++.+++.+.+-.++
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSIGG~~~~~~~~s~~~a~~Fa~~l~~~~ 105 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSIGGAGGSYSLSSDADAKDFADYLWNAF 105 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEccCCCCCcCCCCHHHHHHHHHHHHHHh
Confidence 4568999999999999998877654 23566677777777777766555
No 316
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=25.70 E-value=3.8e+02 Score=22.04 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCeEEEEe---cCCCCCCCCCHHHHHHHHHHHH------------HH-HHcCCCeeEEec-CCCCCC--
Q psy629 30 LTGLISAAKEQGIDFYYAL---SPGLDITYSSGKEVATLKRKLE------------QV-AQFGCRGFALLF-DDIESE-- 90 (166)
Q Consensus 30 l~~L~~~a~~~~v~Fv~ai---sPG~~~~~s~~~d~~~L~~K~~------------ql-~~lGvr~Failf-DDi~~~-- 90 (166)
.+.+.+.+++.|+++..++ .-|-. |.+.++. .+.+++. ++ +.+|++..+|.. +|....
T Consensus 143 ~~~l~~~a~~~~~~~~~G~~~~~~G~~--f~t~~e~-~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~~ 219 (248)
T TIGR01697 143 RKLAQDVAKELGFPLTEGVYVMVSGPS--YETPAEI-RMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGIT 219 (248)
T ss_pred HHHHHHHHHHcCCceeeEEEEEEECCC--cCCHHHH-HHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCcccC
Confidence 3345566777888776666 33443 3444443 5677764 33 679999999854 665532
Q ss_pred CCHHHHHHHhhHHHHHHHHHHHHH
Q psy629 91 MSEADKEVFQSFAHAQVSVTNEVF 114 (166)
Q Consensus 91 ~~~~d~~~f~~~a~aq~~l~n~v~ 114 (166)
...-+.+.|...+..-+.++.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~ll 243 (248)
T TIGR01697 220 DVPLSHEEVLAAAAAAAERFISLL 243 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122233345444444344444443
No 317
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=25.62 E-value=2.9e+02 Score=20.62 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCC-CCC-----CCHHHHHHHHHHHHHHHH
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLD-ITY-----SSGKEVATLKRKLEQVAQ 74 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~-~~~-----s~~~d~~~L~~K~~ql~~ 74 (166)
++-.+.+++|++.+++.+..+++..-|... ..+ ...+.+..+.+.+.++..
T Consensus 79 ~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~ 135 (183)
T cd04501 79 EMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYAR 135 (183)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHH
Confidence 344678999999999999988876544332 111 113455555555555543
No 318
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=25.58 E-value=2.3e+02 Score=22.43 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
..|+..|.++.+.-++.|+. +++||+ ++....++..+..+.+..+ .|-++-|
T Consensus 48 ~~el~~l~~~~~~f~~~g~~-vigIS~------D~~~~~~a~~~~~~~~~~l---~fpllsD 99 (187)
T PRK10382 48 PTELGDVADHYEELQKLGVD-VYSVST------DTHFTHKAWHSSSETIAKI---KYAMIGD 99 (187)
T ss_pred HHHHHHHHHHHHHHHhCCCE-EEEEeC------CCHHHHHHHHHhhccccCC---ceeEEEc
No 319
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=25.57 E-value=2.5e+02 Score=23.81 Aligned_cols=35 Identities=20% Similarity=0.002 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHcCCCe
Q psy629 41 GIDFYYALSPGLDITYSS-GKEVATLKRKLEQVAQFGCRG 79 (166)
Q Consensus 41 ~v~Fv~aisPG~~~~~s~-~~d~~~L~~K~~ql~~lGvr~ 79 (166)
+...+.|.+|.....-.+ +.|++.|++|++ .|++.
T Consensus 129 ~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~----aGA~f 164 (281)
T TIGR00677 129 YFCIGVAGYPEGHPEAESVELDLKYLKEKVD----AGADF 164 (281)
T ss_pred ceEEEEEECCCCCCCCCCHHHHHHHHHHHHH----cCCCE
Confidence 467788888966544333 357889999987 78774
No 320
>PF10061 DUF2299: Uncharacterized conserved protein (DUF2299); InterPro: IPR018747 Members of this family of hypothetical bacterial proteins have no known function. ; PDB: 3CXJ_D.
Probab=25.51 E-value=1e+02 Score=23.60 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=33.1
Q ss_pred ChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Q psy629 11 DYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD 53 (166)
Q Consensus 11 Dpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~ 53 (166)
++.|++.-+.+=+++..+-+.++...+..-+++|++. +||..
T Consensus 57 ~~~H~~~l~~l~~~eR~~fl~~i~~~ll~~~vd~~~~-pp~~~ 98 (138)
T PF10061_consen 57 SPEHQRALRSLKPEEREEFLWEIKRELLRMPVDFVFT-PPNQE 98 (138)
T ss_dssp -HHHHHHHHHS-HHHHHHHHHHHHHHHTTTT-EEEEE--T-TS
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCcEEEc-CCccc
Confidence 4789999999999999999999999999999999655 66554
No 321
>PRK13191 putative peroxiredoxin; Provisional
Probab=25.50 E-value=3.4e+02 Score=21.89 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
..|+..|.++.+.-++.|+. +++||. ++...-.+..+.+++-..+++. |-++.|
T Consensus 50 ~tEl~~l~~~~~ef~~~g~~-VigvS~------Ds~~~h~aw~~~~~~~~~~~i~-fPllsD 103 (215)
T PRK13191 50 TTEFYSFAKKYEEFKKLNTE-LIGLSV------DSNISHIEWVMWIEKNLKVEVP-FPIIAD 103 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCE-EEEEEC------CCHHHHHHHHhhHHHhcCCCCc-eEEEEC
No 322
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=25.48 E-value=1.9e+02 Score=25.53 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=26.4
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 42 IDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 42 v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
.+|..-.+|+. + . ..+|+.|.++||+.+.|-....+
T Consensus 109 ~eit~E~~p~~-~--------~--~e~L~~l~~~GvnrisiGvQS~~ 144 (394)
T PRK08898 109 AEITLEANPGT-F--------E--AEKFAQFRASGVNRLSIGIQSFN 144 (394)
T ss_pred CeEEEEECCCC-C--------C--HHHHHHHHHcCCCeEEEecccCC
Confidence 56777777743 1 1 26789999999999998876655
No 323
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=25.33 E-value=84 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCC
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDI 54 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~ 54 (166)
-+|+.++-+++++|+|++ +|-||+.
T Consensus 77 ~fKef~e~ike~di~fiV-vSsGm~~ 101 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIV-VSSGMDP 101 (220)
T ss_pred cHHHHHHHHHHcCCCEEE-EeCCCch
Confidence 478999999999999976 7888874
No 324
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=25.31 E-value=99 Score=28.53 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=29.1
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 44 FYYALSPG--LDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 44 Fv~aisPG--~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.+|-|.|. .+-+-+...|++-|.+||+-|.+|||+..-|.
T Consensus 7 viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~ 48 (539)
T TIGR02456 7 VFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLL 48 (539)
T ss_pred eEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEEC
Confidence 46777772 22221224689999999999999999998765
No 325
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.20 E-value=2.9e+02 Score=23.28 Aligned_cols=50 Identities=32% Similarity=0.477 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCCCeEE--EEecCCCCCCCC-CHHHHHHHHH--------HHHHHHHcCCCe
Q psy629 27 AEHLTGLISAAKEQGIDFY--YALSPGLDITYS-SGKEVATLKR--------KLEQVAQFGCRG 79 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv--~aisPG~~~~~s-~~~d~~~L~~--------K~~ql~~lGvr~ 79 (166)
.+.++++++.|.+.||+.+ ||.|-- +|. +.++++.|++ +++.+.+.|||-
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~E---N~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv 99 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSD---NWRRPAAEVGGLMRLLRAYLRNETERLARNGVRL 99 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 5789999999999999984 777762 333 4566666663 455677788875
No 326
>KOG0392|consensus
Probab=25.17 E-value=58 Score=33.97 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCee---------EEecCCCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHc-------CCCCceEccccc
Q psy629 67 RKLEQVAQFGCRGF---------ALLFDDIE-SEMSEADKEVFQSFAHAQVSVTNEVFEHL-------GQPKFMLCPTQY 129 (166)
Q Consensus 67 ~K~~ql~~lGvr~F---------ailfDDi~-~~~~~~d~~~f~~~a~aq~~l~n~v~~~l-------~~~~l~~cPt~Y 129 (166)
++|....-=||.++ |||-|||+ |. . + +.-+-++.++++.- ..|.|++||.--
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGK-T---------L-QticilAsd~y~r~s~~~e~~~~PSLIVCPsTL 1042 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGK-T---------L-QTICILASDHYKRRSESSEFNRLPSLIVCPSTL 1042 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccH-H---------H-HHHHHHHHHHHhhcccchhhccCCeEEECCchh
Confidence 34444444677764 68999999 43 1 0 12234566666652 224599999987
Q ss_pred cccccCC------C------CCChhHHHHHhhcc
Q psy629 130 CSTRAVP------N------VKNSEYLNTLGSKL 151 (166)
Q Consensus 130 ~~~~~~~------~------~~~~~Yl~~l~~~L 151 (166)
.+.|... - +++..+...+..++
T Consensus 1043 tGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~ 1076 (1549)
T KOG0392|consen 1043 TGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQY 1076 (1549)
T ss_pred hhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhc
Confidence 7776431 1 35556666665444
No 327
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.16 E-value=1.7e+02 Score=23.28 Aligned_cols=103 Identities=26% Similarity=0.381 Sum_probs=66.1
Q ss_pred eeccCCC--hhhhhhhccCCCHHHHHHHHHHHH--HHHHCCCeEEEEecC-CCCCCC-CCHHHHHHHHHHHHHHH--HcC
Q psy629 5 LYAPKDD--YKHRAYWRDLYSVEEAEHLTGLIS--AAKEQGIDFYYALSP-GLDITY-SSGKEVATLKRKLEQVA--QFG 76 (166)
Q Consensus 5 iYAPKdD--pyhr~~Wre~Yp~~~l~~l~~L~~--~a~~~~v~Fv~aisP-G~~~~~-s~~~d~~~L~~K~~ql~--~lG 76 (166)
||-|-|+ ||||--.-.-|=.+-|-++..-.- .+|..-++|+|=--| |-+-.= +.-++++.=-+-++.|. ++|
T Consensus 32 iYlPAde~vpyhri~FA~GfYaSalHEIaHWcvAGk~Rr~l~DFGYWY~PDGR~a~~Q~~FE~VEvkPQA~eWi~~~aAG 111 (180)
T COG3101 32 IYLPADEEVPYHRIVFAHGFYASALHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQALEWIFCVAAG 111 (180)
T ss_pred eeccCccCCCceeEEEechhHHHHHHHHHHHHHccHHHhhhhccCeeeCCCCccHHHHHHhHhhccchhHHHHHHhhhcC
Confidence 5666655 899888777777777777776444 456677999999999 655311 11123333344566665 467
Q ss_pred CCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHH
Q psy629 77 CRGFALLFDDIESEMSEADKEVFQSFAHAQVSV 109 (166)
Q Consensus 77 vr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l 109 (166)
.+ |-+.-|..+++. +.|+..|++-.+.|+..
T Consensus 112 fp-f~vScDNL~Gd~-epDr~~F~~~V~eqV~~ 142 (180)
T COG3101 112 FP-FNVSCDNLEGDF-EPDRVPFQRRVHEQVMW 142 (180)
T ss_pred Cc-eeeeccccCCCC-CccchHHHHHHHHHHHH
Confidence 76 445778888774 34666787766666543
No 328
>PRK13599 putative peroxiredoxin; Provisional
Probab=25.15 E-value=3.7e+02 Score=21.73 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.|+..|.++.+.-++.|+. ++|||+
T Consensus 46 ~El~~l~~~~~~f~~~gv~-vigIS~ 70 (215)
T PRK13599 46 TEFVEFARKANDFKELNTE-LIGLSV 70 (215)
T ss_pred HHHHHHHHHHHHHHHCCCE-EEEEeC
Confidence 5677888888888888886 568886
No 329
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.11 E-value=4e+02 Score=22.15 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHcCCCeeEEe
Q psy629 64 TLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 64 ~L~~K~~ql~~lGvr~Fail 83 (166)
..++..+...++|++.+.+.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVV 103 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC
Confidence 33444444455566655553
No 330
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=24.96 E-value=1.3e+02 Score=26.20 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCC------------------------------CC-----CCHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSP-GLDI------------------------------TY-----SSGKEVAT 64 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~------------------------------~~-----s~~~d~~~ 64 (166)
.|.++.+..|++|+++++++|...+.-|+. |-.- .+ -+.++++.
T Consensus 70 l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ 149 (338)
T cd02933 70 IYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPG 149 (338)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHH
Confidence 678899999999999999999999888754 3210 01 12467888
Q ss_pred HHHHHHH----HHHcCCCeeEEec
Q psy629 65 LKRKLEQ----VAQFGCRGFALLF 84 (166)
Q Consensus 65 L~~K~~q----l~~lGvr~Failf 84 (166)
++..|.+ ..++|.+-.-|-+
T Consensus 150 ii~~f~~aA~~a~~aGfDgVeih~ 173 (338)
T cd02933 150 IVADFRQAARNAIEAGFDGVEIHG 173 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcc
Confidence 8888764 4557888776643
No 331
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=24.91 E-value=5.1e+02 Score=23.25 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=42.4
Q ss_pred hhhccCCCHHH-HHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629 16 AYWRDLYSVEE-AEHLTGLISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 16 ~~Wre~Yp~~~-l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD 85 (166)
-+||-..-.-. .++|+++.+ ...+.+..|+-| |-++...+ +- -+.++.+|.+.|.+.+.+..|
T Consensus 10 l~~Rg~~~~~~~~~~l~~~l~---~~~~~vy~G~dPTg~slHlGh---lv-~l~~l~~lQ~~G~~~~~ligd 74 (408)
T PRK05912 10 LKERGLIEQITDEEELEEKLA---KEPLRIYLGFDPTAPSLHLGH---LV-PLLKLRRFQDAGHKPIALIGG 74 (408)
T ss_pred HHhCCCeeecCCHHHHHHHhh---CCCCEEEEeecCCCCCccHHh---HH-HHHHHHHHHHCCCcEEEEEcC
Confidence 34555443322 444555543 578999999999 65565543 23 367899999999999988866
No 332
>PRK10785 maltodextrin glucosidase; Provisional
Probab=24.75 E-value=78 Score=29.74 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.+.|++|+++|+++||+.+.=+-+
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 478999999999999998865543
No 333
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=24.71 E-value=4.1e+02 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 62 VATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
.+.+.++|+.+.++||+.|.+.+.+
T Consensus 246 ~~~v~~~l~~~~~aG~~~~~l~~~~ 270 (290)
T TIGR03854 246 WAQLHRRIDAYLDAGLTKFVIRPAG 270 (290)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 3588899999999999999997633
No 334
>PRK15000 peroxidase; Provisional
Probab=24.66 E-value=3.4e+02 Score=21.58 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=34.6
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 43 DFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 43 ~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
-.+.-..|+ +.++-...++..|.+..+++.+.|+.-++|-.|+..
T Consensus 36 ~vvL~F~p~-~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~ 80 (200)
T PRK15000 36 TTVLFFWPM-DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEF 80 (200)
T ss_pred EEEEEEECC-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 355556664 344455678999999999999999999999999764
No 335
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=24.52 E-value=80 Score=29.36 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCC-------------------------CCCCCCCH---HHHHHHHHHHHHH-HHcCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPG-------------------------LDITYSSG---KEVATLKRKLEQV-AQFGC 77 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG-------------------------~~~~~s~~---~d~~~L~~K~~ql-~~lGv 77 (166)
.++|++||++|+++||+.+.=+-+. .+++|++. +-.+-|+.-+... .+.||
T Consensus 159 ~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~i 238 (542)
T TIGR02402 159 PDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHF 238 (542)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 5799999999999999998776542 12334433 4344555544444 46799
Q ss_pred CeeEE
Q psy629 78 RGFAL 82 (166)
Q Consensus 78 r~Fai 82 (166)
+-|=+
T Consensus 239 DGfR~ 243 (542)
T TIGR02402 239 DGLRL 243 (542)
T ss_pred cEEEE
Confidence 98873
No 336
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=24.40 E-value=1.9e+02 Score=24.93 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCeeEEecCCCC--CCCCHH-HHHHHhhHHHHHHHHHHHH
Q psy629 66 KRKLEQVAQFGCRGFALLFDDIE--SEMSEA-DKEVFQSFAHAQVSVTNEV 113 (166)
Q Consensus 66 ~~K~~ql~~lGvr~FailfDDi~--~~~~~~-d~~~f~~~a~aq~~l~n~v 113 (166)
..+|+.+|++|||.+++--..-. +..|.. .......+|..-++-+|++
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~l 166 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNRL 166 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHHc
Confidence 66899999999999999843322 111111 1122334555555666654
No 337
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.38 E-value=3.5e+02 Score=21.23 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 33 LISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 33 L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
+.+..++.++.+|.-=++ +..+.+-..+..+.-..=.+.|.+.|.++.+++-..
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~ 125 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHRRIALVGGG 125 (269)
T ss_pred HHHHHHhCCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 334455677776665443 221111111112232333345667899999988653
No 338
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.30 E-value=1.3e+02 Score=26.13 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCCC-------------------C-----CCHHHHHHHHHHHHH---
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSP-GLDIT-------------------Y-----SSGKEVATLKRKLEQ--- 71 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~-------------------~-----s~~~d~~~L~~K~~q--- 71 (166)
-.|.++.+..|++|+++.++.|..++.-|+- |.... . =+.++++.+++.|.+
T Consensus 69 ~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ 148 (343)
T cd04734 69 NASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR 148 (343)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999998754 32100 0 124678888888764
Q ss_pred -HHHcCCCeeEEec
Q psy629 72 -VAQFGCRGFALLF 84 (166)
Q Consensus 72 -l~~lGvr~Failf 84 (166)
..++|.+-.-|-+
T Consensus 149 ra~~aGfDgVeih~ 162 (343)
T cd04734 149 RCQAGGLDGVELQA 162 (343)
T ss_pred HHHHcCCCEEEEcc
Confidence 3567888776665
No 339
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=24.23 E-value=3.6e+02 Score=21.29 Aligned_cols=54 Identities=6% Similarity=0.063 Sum_probs=31.5
Q ss_pred HHHHHHCCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 34 ISAAKEQGIDFYYALSP--GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 34 ~~~a~~~~v~Fv~aisP--G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
++..++.++.+|.--++ ...+.+-...+.++...=.+.|.+.|.+.++++....
T Consensus 67 ~~~~~~~~~pvV~~~~~~~~~~~~~v~~D~~~a~~~~~~~l~~~g~~~i~~i~~~~ 122 (270)
T cd01544 67 LAKLAKLNPNLVFVDSNPAPDGFDSVVPDFEQAVEKALDYLLELGHTRIGFIGGEE 122 (270)
T ss_pred HHHHHhhCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHcCCCcEEEECCCc
Confidence 34455667887776554 2111111112344455555677789999999987554
No 340
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=24.20 E-value=66 Score=28.27 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=32.9
Q ss_pred eeeec-cCCChhhhhhhccCCC-HHHHHHHHHHHHHHHHCCCeEEEEe
Q psy629 3 SYLYA-PKDDYKHRAYWRDLYS-VEEAEHLTGLISAAKEQGIDFYYAL 48 (166)
Q Consensus 3 ~YiYA-PKdDpyhr~~Wre~Yp-~~~l~~l~~L~~~a~~~~v~Fv~ai 48 (166)
+..+. ..+..|....+++.-| --.++.+++|+++++++|+++++=+
T Consensus 50 Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 50 PIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred CCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33445 3445566666666665 2357899999999999999998876
No 341
>PRK12999 pyruvate carboxylase; Reviewed
Probab=24.20 E-value=6.3e+02 Score=26.06 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCC-CCCC-HHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDI-TYSS-GKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA 94 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~-~~s~-~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~ 94 (166)
+-.++..++..++.+++.|--...+|+.=-|+ +-++ .-+.+-+++..+++.++|++.++ +=|+-|.+.+.
T Consensus 649 ~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~--ikDt~G~l~P~ 720 (1146)
T PRK12999 649 SLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILA--IKDMAGLLKPA 720 (1146)
T ss_pred cCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE--ECCccCCCCHH
Confidence 33446778888899988885444555441111 1111 13567888999999999999777 77888887654
No 342
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=24.19 E-value=1.3e+02 Score=26.43 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CCC---------------C-------CCC-----CHHHHHHHHHHHHH-
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSP-GLD---------------I-------TYS-----SGKEVATLKRKLEQ- 71 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~---------------~-------~~s-----~~~d~~~L~~K~~q- 71 (166)
.|.++.+..|++|+++.+++|..++.-|+. |-. + .+. +.+|++.+++.|.+
T Consensus 76 l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~A 155 (370)
T cd02929 76 LWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDA 155 (370)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999888743 321 0 000 25678888888754
Q ss_pred ---HHHcCCCeeEEe
Q psy629 72 ---VAQFGCRGFALL 83 (166)
Q Consensus 72 ---l~~lGvr~Fail 83 (166)
..++|.+-.-|-
T Consensus 156 A~ra~~aGfDgVEih 170 (370)
T cd02929 156 ALRARDAGFDIVYVY 170 (370)
T ss_pred HHHHHHcCCCEEEEc
Confidence 455777766553
No 343
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.15 E-value=95 Score=21.66 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEE
Q psy629 26 EAEHLTGLISAAKEQGIDFYYA 47 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~a 47 (166)
.++++++|++.++++|+.+.++
T Consensus 98 ~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 98 TLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp SHHHHHHHHHHHHHHTSCEEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEEe
Confidence 4688899999999999987654
No 344
>PRK06256 biotin synthase; Validated
Probab=24.00 E-value=2.8e+02 Score=23.51 Aligned_cols=71 Identities=10% Similarity=-0.044 Sum_probs=42.0
Q ss_pred eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
|..+...++-...+-+... ..++..+.++.+++.|+.+..++-.|+. .+.+|+..+ +..+.++|++...+.
T Consensus 166 v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~I~Glg---Et~ed~~~~---~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 166 YNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGGIIGMG---ESLEDRVEH---AFFLKELDADSIPIN 236 (336)
T ss_pred EecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCeEEeCC---CCHHHHHHH---HHHHHhCCCCEEeec
Confidence 3333333444444433322 3455666777788888887777777763 234555544 445668899987764
No 345
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=23.94 E-value=1.1e+02 Score=28.81 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHCCCeEE--------------EEecCCCCCCCC------CHHHHHHHHHHHHHHHHcCCCeeEEe-
Q psy629 25 EEAEHLTGLISAAKEQGIDFY--------------YALSPGLDITYS------SGKEVATLKRKLEQVAQFGCRGFALL- 83 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv--------------~aisPG~~~~~s------~~~d~~~L~~K~~ql~~lGvr~Fail- 83 (166)
+++..+.-+-+..-+.+-+|- +++|=|-++|-. ...+.+++.+-+..||++|||+|-|-
T Consensus 160 ~el~~~A~~GA~vv~qHP~yp~~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560)
T COG1031 160 EELDAYAPLGAEVVKQHPNYPEYVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560)
T ss_pred HHHHhhhhccchHHHhCCCCcceEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeecc
Confidence 556677766666666666665 223334444321 12356888999999999999998653
Q ss_pred --------cCCCCC
Q psy629 84 --------FDDIES 89 (166)
Q Consensus 84 --------fDDi~~ 89 (166)
-+|+++
T Consensus 240 Q~difsy~~~~~g~ 253 (560)
T COG1031 240 QADIFSYGADDNGG 253 (560)
T ss_pred ccceeeecccccCC
Confidence 577765
No 346
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=23.92 E-value=4.5e+02 Score=22.29 Aligned_cols=54 Identities=11% Similarity=0.327 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCC--CCCCCHHHHHHHHHHHHHH-HHcCCCeeEE
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLD--ITYSSGKEVATLKRKLEQV-AQFGCRGFAL 82 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~--~~~s~~~d~~~L~~K~~ql-~~lGvr~Fai 82 (166)
+++.+-++.+++.|++...+|- |.. ...++.+..+.+.+-+-.+ .+-|.+-+-|
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiG-G~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDi 116 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIG-GANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDI 116 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEe-CCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 5677888889999999998885 332 2345666777777776664 4567665554
No 347
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.89 E-value=1.7e+02 Score=25.73 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=40.3
Q ss_pred ccCCChhhhhhhc---cCCCHH-HHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q psy629 7 APKDDYKHRAYWR---DLYSVE-EAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQV 72 (166)
Q Consensus 7 APKdDpyhr~~Wr---e~Yp~~-~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql 72 (166)
|| |.-.|.++. ..||-+ -++.++++.+.. ...|.|-|.+=||.+ ++.++.++|.+-+..+
T Consensus 220 A~--~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~-~r~v~ieyvLI~GvN---Ds~eda~~L~~ll~~l 283 (342)
T PRK14465 220 HP--DPNGRLQIMDIEEKFPLEELLQAAKDFTREL-KRRITFEYVMIPGVN---MGRENANKLVKIARSL 283 (342)
T ss_pred CC--ChhhcceEeeccccCCHHHHHHHHHHHHHHc-CCEEEEEEEEECCcc---CCHHHHHHHHHHHhhC
Confidence 55 455666764 568844 456666666533 347778899999876 4578888888777654
No 348
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=1.2e+02 Score=25.41 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------CCCCHHHHHHHHHHHHHHHHcCC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDI--------------------TYSSGKEVATLKRKLEQVAQFGC 77 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~--------------------~~s~~~d~~~L~~K~~ql~~lGv 77 (166)
-+.| --..+.++++.-|+.|++.+.+|.|+..+ -|..++=+...+.|+.++++.-.
T Consensus 90 ~H~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~ 165 (220)
T COG0036 90 FHAE-ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMID 165 (220)
T ss_pred EEec-cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhc
Confidence 3344 34578899999999999999999998532 23444556677888888887655
No 349
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=23.83 E-value=1.2e+02 Score=25.88 Aligned_cols=51 Identities=25% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629 30 LTGLISAAKEQGIDFYYALSPGLD-ITYSSGKEVATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 30 l~~L~~~a~~~~v~Fv~aisPG~~-~~~s~~~d~~~L~~K~~ql~~lGvr~F 80 (166)
|-+|++.-++-......|+.|... ..=+-..|+..|++|++.=.+-=++||
T Consensus 132 Lv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~lkrKv~aGAd~~iTQ~ 183 (291)
T COG0685 132 LVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRLKRKVDAGADFFITQF 183 (291)
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHHHHHHhcchHHHHHHH
Confidence 333343333333778888899443 311124688889999983333333333
No 350
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=23.80 E-value=2.2e+02 Score=26.84 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=43.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYY-ALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~-aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
.-+++..+-++.++.++++|+++|+.++. +..+| +.. -+..+..+|+|.|++--.-|+.
T Consensus 472 ~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~------~p~-------~~~~l~~~G~~~lsv~~~~i~~ 531 (565)
T TIGR01417 472 LYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAG------DER-------AIPLLLGLGLRELSMSASSILR 531 (565)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCC------CHH-------HHHHHHHCCCCEEEEChHhHHH
Confidence 44556678899999999999999998875 33332 222 2346788999999988777663
No 351
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=23.75 E-value=2.9e+02 Score=22.65 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFAL 82 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 82 (166)
+.+.+++++.++.++....-|++|.+ ++...|.+ .+.+.|++.+-+
T Consensus 126 ~~l~eiv~avr~~~~pVsvKir~g~~------~~~~~la~---~l~~aG~d~ihv 171 (233)
T cd02911 126 ERLSEFIKALKETGVPVSVKIRAGVD------VDDEELAR---LIEKAGADIIHV 171 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCcC------cCHHHHHH---HHHHhCCCEEEE
Confidence 56778888888889999999999865 22344444 455899996543
No 352
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=23.55 E-value=91 Score=22.13 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHCCCeEEE
Q psy629 28 EHLTGLISAAKEQGIDFYY 46 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~ 46 (166)
...++|.+.|+++|++|.|
T Consensus 98 ~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 98 ALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999876
No 353
>KOG0523|consensus
Probab=23.52 E-value=74 Score=30.50 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRK 68 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K 68 (166)
-||.++-+-...+.-+++..|+-|+.+++|+.-+.+...+-++..+.|
T Consensus 451 ~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~~~~~igkg~ 498 (632)
T KOG0523|consen 451 FRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNTEIEEIGKGK 498 (632)
T ss_pred EecCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCCchhhhcccc
Confidence 367888888888888999999999999999998877765554555444
No 354
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=23.42 E-value=1.6e+02 Score=20.37 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q psy629 44 FYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIES 89 (166)
Q Consensus 44 Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~ 89 (166)
.+|+-.||+=+-= ..+.++.|.+.|+++..+.--++-|.++.|+.
T Consensus 35 ~I~tarPg~vIG~-~G~~i~~L~~~L~k~~~~~~~~i~v~~~~v~~ 79 (81)
T cd02413 35 IIRATRTQNVLGE-KGRRIRELTSLVQKRFNFPEGSVELYAEKVAN 79 (81)
T ss_pred EEEeCCCceEECC-CchhHHHHHHHHHHHhCCCCCeEEEEEEEccc
Confidence 4677788875532 34679999999999999999999988887764
No 355
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=23.24 E-value=1.5e+02 Score=23.59 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPG 51 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG 51 (166)
++-++.+.+|++.|+++|+..+|..+++
T Consensus 53 ~~~~~~i~~li~~ar~~g~pVi~t~~~~ 80 (203)
T cd01013 53 PQLIANIARLRDWCRQAGIPVVYTAQPG 80 (203)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4457899999999999999999988764
No 356
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.17 E-value=4e+02 Score=21.48 Aligned_cols=56 Identities=5% Similarity=0.086 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCC---CCCC--CCH----HHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 28 EHLTGLISAAKEQGIDFYYALSPGL---DITY--SSG----KEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~Fv~aisPG~---~~~~--s~~----~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
..+++|.+.+++.|+.. .+++|+. .+++ .++ +.++.+.+-++....+|+...-+..
T Consensus 47 ~~~~~l~~~~~~~gl~v-~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 47 GGIKQIKALAQTYQMPI-IGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred hHHHHHHHHHHHcCCeE-EEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 46788888889999986 5787742 1222 232 2355666667778889999886643
No 357
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=23.09 E-value=74 Score=23.20 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=27.7
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHH-----HHHHHHHcCCCeeEEecCCC
Q psy629 42 IDFYYALSPGLDITYSSGKEVATLKR-----KLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 42 v~Fv~aisPG~~~~~s~~~d~~~L~~-----K~~ql~~lGvr~FailfDDi 87 (166)
+-|+.-|.||.- +++++.-+ =++.|.+.||+.+.|+.|.-
T Consensus 2 ~af~~~l~p~~~------~eY~~~H~~vWPEv~~~L~~~Gi~~ysIfl~~~ 46 (102)
T TIGR02625 2 KAFVMYVNPDAH------EEYQKRHNEIWPELKEVLKSHGAHNYSIFLDKQ 46 (102)
T ss_pred eeEEEEeCHHHH------HHHHHHHHccCHHHHHHHHHCCCeEEEEEEECC
Confidence 357788888753 23333332 35778999999999999854
No 358
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.08 E-value=4.2e+02 Score=21.68 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccccc
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQY 129 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y 129 (166)
.+....+=++.|...|++..++.+..+...... +-..+....+.|.+.++++.+..+..++..+|..-
T Consensus 173 ~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~-~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~ 240 (254)
T cd00550 173 SLYETERAIQELAKYGIDVDAVIVNQLLPEDVT-NCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLP 240 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEecCcccccC-CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCC
Confidence 455666667788899999999999887743220 11234556778889999999988888888888764
No 359
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.04 E-value=3e+02 Score=22.99 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCeEE--EEecCCCCCCCC-CHHHHHHHHHH--------HHHHHHcCCCeeE
Q psy629 27 AEHLTGLISAAKEQGIDFY--YALSPGLDITYS-SGKEVATLKRK--------LEQVAQFGCRGFA 81 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv--~aisPG~~~~~s-~~~d~~~L~~K--------~~ql~~lGvr~Fa 81 (166)
.+.++++++.|.+.||+.+ ||.|-- +|. +.++++.|++= ++.+.+.|||-=.
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~e---N~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~ 95 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTE---NWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRI 95 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 5789999999999999984 777762 333 35666665533 3446667776544
No 360
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.01 E-value=1.4e+02 Score=25.67 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEec
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALS 49 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais 49 (166)
.|.++.+..+++|++++++.|...+.-|+
T Consensus 70 ~~~d~~~~~~~~l~~~vh~~G~~~~~QL~ 98 (336)
T cd02932 70 LWNDEQIEALKRIVDFIHSQGAKIGIQLA 98 (336)
T ss_pred ecCHHHHHHHHHHHHHHHhcCCcEEEEcc
Confidence 67899999999999999999999888863
No 361
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.82 E-value=4.4e+02 Score=21.82 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+.+|..+|-+++..+...++..+.+++.. + .+..++..+...++|++.+-|..
T Consensus 52 t~~Er~~l~~~~~~~~~~~~~vi~gv~~~------s---t~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 52 TDEERKELLEIVVEAAAGRVPVIAGVGAN------S---TEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEEESS------S---HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CHHHHHHHHHHHHHHccCceEEEecCcch------h---HHHHHHHHHHHhhcCceEEEEec
Confidence 45666666666555555678877777652 1 34445555566778988877765
No 362
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=22.77 E-value=1.6e+02 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCC--CeEEEEecCC
Q psy629 28 EHLTGLISAAKEQG--IDFYYALSPG 51 (166)
Q Consensus 28 ~~l~~L~~~a~~~~--v~Fv~aisPG 51 (166)
..++.+.+.+++.+ |...+||||.
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~GiHP~ 64 (255)
T PF01026_consen 39 EDWERVLELASQYPDRVYPALGIHPW 64 (255)
T ss_dssp HHHHHHHHHHHHTTTEEEEEE---GG
T ss_pred HHhHHHHHHHhcCCCeEEEEecCCcc
Confidence 34455666666555 8999999993
No 363
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=22.75 E-value=1.5e+02 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.|.++.+..|++|+++++++|...+.-|+.
T Consensus 72 l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H 101 (362)
T PRK10605 72 LHSPEQIAAWKKITAGVHAEGGHIAVQLWH 101 (362)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEeccC
Confidence 578899999999999999999999888754
No 364
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=22.73 E-value=3.9e+02 Score=23.78 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCC---CCCC-CHHHHHHHHHHHHHHHHc--CCCeeEEecC
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLD---ITYS-SGKEVATLKRKLEQVAQF--GCRGFALLFD 85 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~---~~~s-~~~d~~~L~~K~~ql~~l--Gvr~FailfD 85 (166)
+.+|++.|.++++.++...+++..-|.||.+ -+|. +.++... -++++.+. |++-.||.+=
T Consensus 110 s~~el~~l~~~a~~~~~~~~~v~lRIn~~~~~~~sRfGi~~~e~~~---~~~~i~~~~~~l~l~Glh~H 175 (423)
T cd06842 110 SLDELDRLLALARGYTTGPARVLLRLSPFPASLPSRFGMPAAEVRT---ALERLAQLRERVRLVGFHFH 175 (423)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCCCCCCCCCHHHHHH---HHHHHHhcCCCCeEEEEEEE
Confidence 4445555544443212356889999999752 3444 2333444 44455665 8888888863
No 365
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=22.59 E-value=1.9e+02 Score=26.35 Aligned_cols=53 Identities=30% Similarity=0.470 Sum_probs=40.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeE
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFA 81 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa 81 (166)
|..|....+++|++|++.+ +.+.....||-+.. .+.|+.=++|...++++.+=
T Consensus 292 rs~~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K--------~~dlkei~~~f~~~~i~~~I 344 (407)
T COG1419 292 RSQYDKEKIEELKELIDVS--HSIEVYLVLSATTK--------YEDLKEIIKQFSLFPIDGLI 344 (407)
T ss_pred CCccCHHHHHHHHHHHhcc--ccceEEEEEecCcc--------hHHHHHHHHHhccCCcceeE
Confidence 6788899999999999999 56666666666432 25667777788888888764
No 366
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.53 E-value=69 Score=25.52 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHcCCCCceEccccccccccCC-C-CCChhHHHHHhhccCCCceEEeeCCCC
Q psy629 97 EVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVP-N-VKNSEYLNTLGSKLAKEIDIMWTGPKV 164 (166)
Q Consensus 97 ~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~-~-~~~~~Yl~~l~~~L~~~i~i~WTG~~V 164 (166)
.-|++.+..-+.++.++.+..+.|.=...-.|=++.-... . ....-|.+ -..+-.|||+||.|
T Consensus 14 ~fFG~~s~gla~~ie~af~~~G~PngYI~G~E~sGA~~~GlrYGeG~L~~k-----~~g~~~vyWqGPSi 78 (160)
T PF06577_consen 14 GFFGSTSEGLAKVIEKAFKDYGRPNGYILGEEASGAFVVGLRYGEGTLYTK-----NAGQHKVYWQGPSI 78 (160)
T ss_pred hhhhhhhHHHHHHHHHHHHHcCCCceEEEeeeccccEEEEEEecccEEEEc-----CCCeeEEEEeCCce
Confidence 3467778888899999999998754111222222211100 0 01233333 23457899999986
No 367
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=22.51 E-value=1.7e+02 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
..+.+.++|+++.++||+.|-|-+-|
T Consensus 305 tpe~Va~~l~~~~~~Gv~~~~L~~~~ 330 (346)
T TIGR03565 305 DPETVAARIREYQDLGIDTFILSGYP 330 (346)
T ss_pred CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 35778899999999999999988544
No 368
>PLN02411 12-oxophytodienoate reductase
Probab=22.32 E-value=1.5e+02 Score=26.32 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEec
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALS 49 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais 49 (166)
.|.++.+..|++|+++.+++|...+.-|+
T Consensus 80 i~~d~~i~~~~~l~~avH~~G~~i~~QL~ 108 (391)
T PLN02411 80 IYSDEQVEAWKKVVDAVHAKGSIIFCQLW 108 (391)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEecc
Confidence 68899999999999999999999988874
No 369
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.12 E-value=1.1e+02 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCCeeEEec
Q psy629 61 EVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 61 d~~~L~~K~~ql~~lGvr~Failf 84 (166)
|.+.+.+.++++.+.||+++||.+
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~ 155 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSL 155 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEC
Confidence 457888999999999999999876
No 370
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.12 E-value=3e+02 Score=21.41 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHH-HHCCCeEEEEecCCCC
Q psy629 22 YSVEEAEHLTGLISAA-KEQGIDFYYALSPGLD 53 (166)
Q Consensus 22 Yp~~~l~~l~~L~~~a-~~~~v~Fv~aisPG~~ 53 (166)
=++++.+.|.+|-++. .+.|--|+++.+ |.+
T Consensus 88 ~~~~~~~~L~~lN~~Y~~kFGfpFii~v~-g~s 119 (158)
T TIGR03180 88 ADEETRAALLEGNAAYEEKFGRIFLIRAA-GRS 119 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEeeC-CCC
Confidence 4678889999999988 567999999988 754
No 371
>smart00642 Aamy Alpha-amylase domain.
Probab=22.11 E-value=1e+02 Score=23.95 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 60 KEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 60 ~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.+++.+.+|++.|.++||+.+-|.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~ 39 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLS 39 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEC
Confidence 568999999999999999998764
No 372
>PRK06917 hypothetical protein; Provisional
Probab=22.09 E-value=4e+02 Score=23.92 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCeEEE-------------EecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy629 29 HLTGLISAAKEQGIDFYY-------------ALSPGLDITYSSGKEVATLKRKLEQVAQ 74 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~-------------aisPG~~~~~s~~~d~~~L~~K~~ql~~ 74 (166)
.-+.+...+.++||-+.. -|+|-+.+ +++|++.+++.|+...+
T Consensus 381 ~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~i---t~~eid~~~~~l~~~l~ 436 (447)
T PRK06917 381 VASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTI---TYSELDELLSIFAKSVE 436 (447)
T ss_pred HHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcC---CHHHHHHHHHHHHHHHH
Confidence 456788899999997632 24554444 46889999988876553
No 373
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=22.00 E-value=2.5e+02 Score=27.49 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=41.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQGIDFYYALS-PGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais-PG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
-++..++-++.++..+++|++.|+.++.+-. ++.+ .+ -...+.++|+|.|++--|-+.
T Consensus 713 ~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~-----p~-------~~~~l~~~G~~~ls~~~d~~~ 771 (782)
T TIGR01418 713 FDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDY-----PE-------VVEFLVEEGIDSISLNPDAVL 771 (782)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCC-----HH-------HHHHHHHcCCCEEEECcchHH
Confidence 4455678899999999999999998765322 1111 12 234678999999998777654
No 374
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=21.91 E-value=5e+02 Score=22.81 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHH
Q psy629 67 RKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNT 146 (166)
Q Consensus 67 ~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~ 146 (166)
.-+++|.+.||++.-++-= -...+ +.+.|...-.+.+.+.+.-+.+++.++|.+|.. ..|++.
T Consensus 106 ~~v~~l~~~gv~~iv~~pL--yPqyS------~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~---------p~yI~a 168 (320)
T COG0276 106 EAVEELKKDGVERIVVLPL--YPQYS------SSTTGSYVDELARALKELRGQPKISTIPDYYDE---------PLYIEA 168 (320)
T ss_pred HHHHHHHHcCCCeEEEEEC--Ccccc------cccHHHHHHHHHHHHHhcCCCCceEEecCccCC---------hHHHHH
Confidence 4567889999988766510 00000 012233333344444333356789999999964 456665
Q ss_pred Hhh
Q psy629 147 LGS 149 (166)
Q Consensus 147 l~~ 149 (166)
+++
T Consensus 169 ~a~ 171 (320)
T COG0276 169 LAD 171 (320)
T ss_pred HHH
Confidence 543
No 375
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=21.81 E-value=1.1e+02 Score=29.86 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHCCCeEEE
Q psy629 20 DLYSVEEAEHLTGLISAAKEQGIDFYY 46 (166)
Q Consensus 20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~ 46 (166)
.+.|...+.+||.||++.+++||..+.
T Consensus 257 ~p~p~~~i~EfK~mV~~lHkaGI~VIL 283 (697)
T COG1523 257 NPEPATRIKEFKDMVKALHKAGIEVIL 283 (697)
T ss_pred CCCcchHHHHHHHHHHHHHHcCCEEEE
Confidence 455888999999999999999998874
No 376
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=21.77 E-value=2.3e+02 Score=25.56 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=47.1
Q ss_pred hhhhccCCCHH-HHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCC
Q psy629 15 RAYWRDLYSVE-EAEHLTGLISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDI 87 (166)
Q Consensus 15 r~~Wre~Yp~~-~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 87 (166)
.-+||....+. ..++|+++. .....+.+..|+-| |-++.... --.+.++.++.+.|.+-+.+.-|--
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~--~~~~~~~iy~G~dPT~~sLHlGh----lv~l~~l~~lq~~G~~~~~ligd~t 76 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSL--KEGKPLTLYLGFDPTAPSLHIGH----LVPLMKLKRFQDAGHRPVILIGGFT 76 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHH--hcCCCcEEEEcccCCCCCcchhh----HHHHHHHHHHHHcCCeEEEEEcccc
Confidence 45688887766 344555542 34567899999999 65665543 2336778999999999998886664
No 377
>PRK05638 threonine synthase; Validated
Probab=21.75 E-value=4.6e+02 Score=23.49 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHH--HH--------HHhh
Q psy629 32 GLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEAD--KE--------VFQS 101 (166)
Q Consensus 32 ~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d--~~--------~f~~ 101 (166)
.|+..|+..|+++++-+.++.+ ..|++|+...|.+-.-+- .|.+.....+. .+ .+.+
T Consensus 126 alA~~aa~~G~~~~i~vp~~~~------------~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~~~~~~~~~~n 192 (442)
T PRK05638 126 SVAAYSARAGKEAFVVVPRKVD------------KGKLIQMIAFGAKIIRYG-ESVDEAIEYAEELARLNGLYNVTPEYN 192 (442)
T ss_pred HHHHHHHHcCCCEEEEEeCCCC------------HHHHHHHHhcCcEEEEEC-CCHHHHHHHHHHHHHhCCeEecCCCCC
Confidence 4555666666666666555321 457778888888776541 01000000000 00 0101
Q ss_pred --HHHHHHHHHHHHHHHcCCCCceEccccccc
Q psy629 102 --FAHAQVSVTNEVFEHLGQPKFMLCPTQYCS 131 (166)
Q Consensus 102 --~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~ 131 (166)
.-..|..+.-+|.+.++ ++.+|||+.--+
T Consensus 193 p~~~eG~~t~a~Ei~eq~~-pD~vv~pvG~Gg 223 (442)
T PRK05638 193 IIGLEGQKTIAFELWEEIN-PTHVIVPTGSGS 223 (442)
T ss_pred hhHhhhHHHHHHHHHHHHC-cCEEEEeCCchH
Confidence 12345666777777776 778888887543
No 378
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=21.58 E-value=3.6e+02 Score=22.81 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
+-.+.+++++++|+++|+-++ +.++ +.+ -..++.+.|++-+.+-.
T Consensus 194 ev~~ai~~v~~a~~~~Gk~~G--~~~~------~~~-------~a~~~~~~G~~~v~~g~ 238 (267)
T PRK10128 194 EVQRIIETSIRRIRAAGKAAG--FLAV------DPD-------MAQKCLAWGANFVAVGV 238 (267)
T ss_pred HHHHHHHHHHHHHHHcCCeEE--EcCC------CHH-------HHHHHHHcCCcEEEECh
Confidence 455789999999999999664 4331 222 23566789999777543
No 379
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=21.57 E-value=1.9e+02 Score=26.78 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF 80 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F 80 (166)
.+.+++..++..|++.+.+-| +|...-+.+.|.+.++++.++|.+..
T Consensus 123 ~~~~~~~~~~~~~~~vI~S~H-----~f~~tP~~~el~~~~~~~~~~gaDi~ 169 (529)
T PLN02520 123 EFINSISGKKPEKCKVIVSSH-----NYENTPSVEELGNLVARIQATGADIV 169 (529)
T ss_pred hHHHHHHhhhhcCCEEEEEec-----CCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 455667777778888888877 33322224678899999999996653
No 380
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=21.48 E-value=4.1e+02 Score=23.20 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEE--------------ecC---CC---CCCCC-----CHHHHHHHHHHHHHHHHcCCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYA--------------LSP---GL---DITYS-----SGKEVATLKRKLEQVAQFGCR 78 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~a--------------isP---G~---~~~~s-----~~~d~~~L~~K~~ql~~lGvr 78 (166)
++.++-+++|++.+++.+-+|.+- +.| |. ++-+. +++|.+.+++.|+++.+.|+.
T Consensus 187 ~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~ 266 (315)
T TIGR01370 187 AEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKF 266 (315)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCc
Confidence 566789999999999988888772 223 11 11111 367899999999999999999
Q ss_pred eeEEec
Q psy629 79 GFALLF 84 (166)
Q Consensus 79 ~Failf 84 (166)
-|+|=.
T Consensus 267 Vl~IDY 272 (315)
T TIGR01370 267 VLTVDY 272 (315)
T ss_pred EEEEEe
Confidence 888654
No 381
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.45 E-value=3.6e+02 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCeeEEecCCCCCC
Q psy629 67 RKLEQVAQFGCRGFALLFDDIESE 90 (166)
Q Consensus 67 ~K~~ql~~lGvr~FailfDDi~~~ 90 (166)
..++.|.+.|++.+.|-+|-....
T Consensus 96 e~~~~L~~~g~~~v~iSldg~~~e 119 (358)
T TIGR02109 96 ARLDALADAGLDHVQLSFQGVDEA 119 (358)
T ss_pred HHHHHHHhCCCCEEEEeCcCCCHH
Confidence 356778889999999999877543
No 382
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=21.36 E-value=1.2e+02 Score=25.25 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=24.5
Q ss_pred HHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy629 32 GLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQ 74 (166)
Q Consensus 32 ~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~ 74 (166)
-|++.|.++||.+.+.++|=+.- +.-+...+++.+..+..
T Consensus 121 VLAKlAa~n~VAIe~~L~plL~~---~G~~Rar~L~~~r~~l~ 160 (216)
T PRK03892 121 VLARMAAKRGVAIGFSLSPLLRA---NPYERANILRFMMKAWQ 160 (216)
T ss_pred HHHHHHHHcCeEEEEecHHHHhh---CchhHHHHHHHHHHHHH
Confidence 47888888999999998884432 12233444444444443
No 383
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.25 E-value=2.2e+02 Score=24.94 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHH--HHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 23 SVEEAEHLTGLISAA--KEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 23 p~~~l~~l~~L~~~a--~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
|.+++++|-+.+... ....+.+.+-.+| +++.. .+++.|.++||+.+.|-....+
T Consensus 70 ~~~~L~~ll~~i~~~f~~~~~~eit~E~~P---------~~i~~--e~L~~l~~~GvnrislGvQS~~ 126 (380)
T PRK09057 70 QPETVAALLDAIARLWPVADDIEITLEANP---------TSVEA--GRFRGYRAAGVNRVSLGVQALN 126 (380)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccEEEEECc---------CcCCH--HHHHHHHHcCCCEEEEecccCC
No 384
>PRK15447 putative protease; Provisional
Probab=21.25 E-value=3e+02 Score=23.43 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
.++|++.++.+++.|.+.++++-- .-. .+++++.+.+ +.+.|+. +|...|++
T Consensus 47 ~~~l~e~v~~~~~~gkkvyva~p~-i~~---~~~e~~~l~~----~l~~~~~--~v~v~d~g 98 (301)
T PRK15447 47 VGDWLELAERLAAAGKEVVLSTLA-LVE---APSELKELRR----LVENGEF--LVEANDLG 98 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecc-ccc---CHHHHHHHHH----HHhcCCC--EEEEeCHH
Confidence 467888888999999998886632 211 1345555544 3344543 66666654
No 385
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.24 E-value=2.6e+02 Score=24.42 Aligned_cols=55 Identities=9% Similarity=0.156 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
|.+++++|-+.+...-.....|..-.+| +.+.. .+++.|.++||+.+.|-++..+
T Consensus 71 ~~~~l~~ll~~i~~~~~~~~eitiE~nP---------~~lt~--e~l~~lk~~G~nrisiGvQS~~ 125 (353)
T PRK05904 71 NDQLLDILLSTIKPYVDNNCEFTIECNP---------ELITQ--SQINLLKKNKVNRISLGVQSMN 125 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEecc---------CcCCH--HHHHHHHHcCCCEEEEecccCC
No 386
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=21.24 E-value=1.9e+02 Score=27.37 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=41.6
Q ss_pred hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
..+++..+-++.++..+++|++.|+..+.|=-=. +++. =+--|..+|+|.|++--.-|.
T Consensus 473 ~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A-----~dp~-------~~~lLlglGi~~lSm~p~~i~ 531 (575)
T PRK11177 473 LYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA-----GDER-------ATLLLLGMGLDEFSMSAISIP 531 (575)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC-----CCHH-------HHHHHHHCCCCeEEECHHHHH
Confidence 4566678889999999999999999876652111 1121 233678899999997655554
No 387
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=21.22 E-value=4.3e+02 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecC
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
..++|++||++++++||+.+.=+-+
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 5679999999999999987765443
No 388
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.22 E-value=3.6e+02 Score=22.70 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCCeEE--EEecCCCCCCCC-CHHHHHHHHH----HH----HHHHHcCCCeeE
Q psy629 27 AEHLTGLISAAKEQGIDFY--YALSPGLDITYS-SGKEVATLKR----KL----EQVAQFGCRGFA 81 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv--~aisPG~~~~~s-~~~d~~~L~~----K~----~ql~~lGvr~Fa 81 (166)
.+.+.++++.|.+.||+.+ |+.|- -+|. +.+++..|++ +| +.+.+.|||--.
T Consensus 52 ~~~l~~~l~~c~~~GI~~vTvYaFS~---eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~v 114 (251)
T PRK14830 52 MDTVKKITKAASELGVKVLTLYAFST---ENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNV 114 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeh---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 5789999999999999965 66554 2333 4567777753 33 334456776543
No 389
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=21.18 E-value=1.6e+02 Score=20.33 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=17.2
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHHHH
Q psy629 14 HRAYWRDLYSVEEAEHLTGLISAAKE 39 (166)
Q Consensus 14 hr~~Wre~Yp~~~l~~l~~L~~~a~~ 39 (166)
|...+.++ ++++++.|.++.+.+.+
T Consensus 46 h~~~~~~l-~~~~~~~l~~~~~~~~~ 70 (104)
T cd01278 46 HIASLKAL-TKEDVPLLEHMETVGRE 70 (104)
T ss_pred CCCChHHC-CHhHHHHHHHHHHHHHH
Confidence 56666666 77777888777666644
No 390
>PTZ00377 alanine aminotransferase; Provisional
Probab=21.12 E-value=3.1e+02 Score=24.62 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHC--CCeEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629 28 EHLTGLISAAKEQ--GIDFYYALSPGLD--ITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE 90 (166)
Q Consensus 28 ~~l~~L~~~a~~~--~v~Fv~aisPG~~--~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~ 90 (166)
+.|.+.+..+++. +++.++-++|.+. ..++ .+++++|.+-.++ ..+-|..||+-..
T Consensus 203 ~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s-~e~~~~i~~~a~~------~~~~iI~De~Y~~ 262 (481)
T PTZ00377 203 EELEEAYEQAVRNGITPRALVVINPGNPTGQVLT-RDVMEEIIKFCYE------KGIVLMADEVYQE 262 (481)
T ss_pred HHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCC-HHHHHHHHHHHHH------CCCEEEEehhhHh
Confidence 5566666555444 7888888899653 4454 4566666654443 2345667776543
No 391
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=21.08 E-value=2e+02 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
+.+.+|++.+.++||++|.+.+-+-+
T Consensus 237 ~ev~e~l~~~~~aGvd~l~l~~~~~~ 262 (278)
T TIGR03620 237 DTVAARVREHLDAGADHVAVQVLTDD 262 (278)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 56788999999999999999985444
No 392
>KOG2368|consensus
Probab=21.03 E-value=2.9e+02 Score=23.77 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
+|-+.+|++..++|++++|+.-=-+|--..-.|...-.=++...-.+.||++||--.+| -|-|+
T Consensus 130 ees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSL-GDTIG 193 (316)
T KOG2368|consen 130 EESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISL-GDTIG 193 (316)
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEec-ccccc
Confidence 56689999999999999998643333312212221111133444456679999977763 46666
No 393
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.98 E-value=83 Score=18.46 Aligned_cols=14 Identities=43% Similarity=0.439 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHc
Q psy629 62 VATLKRKLEQVAQF 75 (166)
Q Consensus 62 ~~~L~~K~~ql~~l 75 (166)
.+.|+.|++||..-
T Consensus 17 ~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 17 REQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcc
Confidence 57889999998753
No 394
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=20.91 E-value=4.1e+02 Score=21.41 Aligned_cols=88 Identities=27% Similarity=0.418 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------CCCC-CHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLD-------------ITYS-SGKEVATLKRKLEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~-------------~~~s-~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 88 (166)
+.+|++.|.+++... +...-|+|+.. -.|. +.++ .+.+-++.+.+.|++-.||-|- ++
T Consensus 94 s~~el~~l~~~~~~~-----~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~~--~~~~~l~~~~~~~l~l~GlH~H-~g 165 (251)
T PF02784_consen 94 SLEELERLAELAPEA-----RVGLRINPGIGAGSHPKISTGGKDSKFGIDIEE--EAEEALERAKELGLRLVGLHFH-VG 165 (251)
T ss_dssp SHHHHHHHHHHHCTH-----EEEEEBE-SESTTTSCHHCSSSHTSSSSBEGGG--HHHHHHHHHHHTTEEEEEEEE--HC
T ss_pred CHHHHHHHhccCCCc-----eeeEEEeeccccccccccCCCCCCCcCCcChHH--HHHHHHHhhccceEEEEEeeee-ec
Confidence 345555555555444 78888888621 1333 1233 1555666777888888888876 44
Q ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Q psy629 89 SEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120 (166)
Q Consensus 89 ~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~ 120 (166)
.... +.+.|....+.-..++.++.+.+|-+
T Consensus 166 S~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~ 195 (251)
T PF02784_consen 166 SQIL--DAEAFRQAIERLLDLAEELKEELGFE 195 (251)
T ss_dssp SSBS--SCHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCc--chHHHHHHHHHHHHHHhhhccccccc
Confidence 4332 22344444444456677777666643
No 395
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.80 E-value=4e+02 Score=22.88 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSPGLDITY-SSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~-s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
++.++.++++|.+.+...+..+|||.- .| ..-+.+..+.+.+.+-++.+| -++|-+|=
T Consensus 28 ~e~~~avi~AAe~~~sPvIiq~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~V-PV~lHLDH 86 (285)
T PRK07709 28 LEWTQAILAAAEEEKSPVILGVSEGAA-RHMTGFKTVVAMVKALIEEMNITV-PVAIHLDH 86 (285)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchh-hhcCCHHHHHHHHHHHHHHcCCCC-cEEEECCC
Confidence 567888999999999999999999743 33 333334444444433221112 35555553
No 396
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=20.78 E-value=1.8e+02 Score=25.16 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CCC------------------CCCC-----------CHHHHHHHHHHHH
Q psy629 21 LYSVEEAEHLTGLISAAKEQGIDFYYALSP-GLD------------------ITYS-----------SGKEVATLKRKLE 70 (166)
Q Consensus 21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~------------------~~~s-----------~~~d~~~L~~K~~ 70 (166)
.++++.+..+++|+++.+++|...+.-|+- |.. +... +.+|++.+++.|.
T Consensus 73 i~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~ 152 (341)
T PF00724_consen 73 IWDDEQIPGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFA 152 (341)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHH
Confidence 578999999999999999999999987754 310 0000 3678999998886
Q ss_pred H----HHHcCCCeeEEec
Q psy629 71 Q----VAQFGCRGFALLF 84 (166)
Q Consensus 71 q----l~~lGvr~Failf 84 (166)
+ ..++|.+-.-|-.
T Consensus 153 ~AA~~A~~AGfDGVEIH~ 170 (341)
T PF00724_consen 153 QAARRAKEAGFDGVEIHA 170 (341)
T ss_dssp HHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHhccCeEeecc
Confidence 5 4568888777653
No 397
>PRK09505 malS alpha-amylase; Reviewed
Probab=20.76 E-value=1.3e+02 Score=29.19 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.++|++||++|+++||+.++=+-+
T Consensus 291 ~~dfk~Lv~~aH~~Gi~VilD~V~ 314 (683)
T PRK09505 291 EADLRTLVDEAHQRGIRILFDVVM 314 (683)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 679999999999999999998887
No 398
>PRK00124 hypothetical protein; Validated
Probab=20.68 E-value=3.6e+02 Score=21.08 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=34.1
Q ss_pred HHHHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHh
Q psy629 33 LISAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQ 100 (166)
Q Consensus 33 L~~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~ 100 (166)
|++.+-+.| .++||| |.-++-++=...-..-.=-++|+..|.+.= =+...+.+|++.|.
T Consensus 78 LAa~~l~Kg---a~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t~------Gp~~~~~~Dr~~F~ 137 (151)
T PRK00124 78 LAALALEKG---AIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRTG------GPKPFTQEDRSRFE 137 (151)
T ss_pred HHHHHHHCC---CEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCCC------CCCCCCHHHHHHHH
Confidence 666666776 468999 665542221222222223456777887641 13456788998884
No 399
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.61 E-value=4.7e+02 Score=23.34 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecC-CCCCCCCC--HHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSP-GLDITYSS--GKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisP-G~~~~~s~--~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
.+.+++|.+++++|++.|+-.+.-+-| |..+.-.. ..+.+.+..=-..-.+||.+..=+-+
T Consensus 175 ~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~y 238 (348)
T PRK09250 175 RRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKL 238 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecC
Confidence 456889999999999999998776777 76653211 01133444444455678877766543
No 400
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.58 E-value=3.3e+02 Score=22.44 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCC
Q psy629 25 EEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEM 91 (166)
Q Consensus 25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~ 91 (166)
.-+..+.++.++..-..-+.++-|.-..-+ .+.+.+...+.+|.++|| .|..||.+...
T Consensus 103 ~~~~~l~~~l~~~~~~~~~l~lEitE~~~~-----~~~~~~~~~l~~L~~~G~---~ialDDFGtG~ 161 (256)
T COG2200 103 GLVDLLLRLLARLGLPPHRLVLEITESALI-----DDLDTALALLRQLRELGV---RIALDDFGTGY 161 (256)
T ss_pred hHHHHHHHHHHHhCCCcceEEEEEeCchhh-----cCHHHHHHHHHHHHHCCC---eEEEECCCCCH
Confidence 334444444444222222555555553322 234578889999999995 46699999654
No 401
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.54 E-value=3.7e+02 Score=23.60 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHCCCe--EEEEecCCCCCCCCCHHHHHHHHHH---------HHHHHHcCCCeeEEecCCCC
Q psy629 34 ISAAKEQGID--FYYALSPGLDITYSSGKEVATLKRK---------LEQVAQFGCRGFALLFDDIE 88 (166)
Q Consensus 34 ~~~a~~~~v~--Fv~aisPG~~~~~s~~~d~~~L~~K---------~~ql~~lGvr~FailfDDi~ 88 (166)
...+++.|+. .+.++.||.. +.++.-.+.+| ++.+.+.|+. -++||=.=
T Consensus 139 l~llk~yg~aavIvLa~d~~~p----t~e~Rl~i~~~~~~~~~~gll~~a~~~GI~--diliDplV 198 (308)
T PRK00979 139 IEALKESDIKAAIVLAFDPMDP----SVEGRLKMLEEGGKGQDKGMLPLAEEAGIE--RPLVDTAV 198 (308)
T ss_pred HHHHHHhCCceEEEEEcCCCCC----CHHHHHHHHHhccccchHHHHHHHHHcCCC--cEEeccCC
Confidence 5788899977 5567888632 45566666666 8888999996 77788433
No 402
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=1.2e+02 Score=27.59 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=39.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHC-----------CCeEEEEecC-CCCCCCCC-------HHHHHHHHHHHHHHHH
Q psy629 19 RDLYSVEEAEHLTGLISAAKEQ-----------GIDFYYALSP-GLDITYSS-------GKEVATLKRKLEQVAQ 74 (166)
Q Consensus 19 re~Yp~~~l~~l~~L~~~a~~~-----------~v~Fv~aisP-G~~~~~s~-------~~d~~~L~~K~~ql~~ 74 (166)
|..=|++.++.|+.+.+...=. ||-++|+++| -.++++++ .+-+.+|+.=|+-+..
T Consensus 12 r~~~p~et~~~~q~~l~~~gitrI~~~t~Ld~~gIPv~~a~rp~~~~~~~~~GKGat~~~A~vSAimE~~Er~sA 86 (398)
T COG1944 12 RDASPEETLAAFQPLLAALGITRIEDITWLDRLGIPVVWAVRPRALGLSVSQGKGATKAAARVSALMEALERLSA 86 (398)
T ss_pred ccCCHHHHHHHHHHHHHhcCceeeeeeeccccCCCceEEEeeeccccceeecCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4455778888888887777655 8999999999 34677775 2456666666665543
No 403
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=20.51 E-value=5.4e+02 Score=21.97 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 86 (166)
++.+.++.+++.|+.+..-+=-|... .+..+.++.+++-++.+.+++ +.+.+.-=-
T Consensus 156 ~~~~ai~~~~~~Gi~v~~~~i~G~P~-~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~ 211 (313)
T TIGR01210 156 DFIRAAELARKYGAGVKAYLLFKPPF-LSEKEAIADMISSIRKCIPVT-DTVSINPTN 211 (313)
T ss_pred HHHHHHHHHHHcCCcEEEEEEecCCC-CChhhhHHHHHHHHHHHHhcC-CcEEEECCE
Confidence 45566666777777654444433321 122345666777777777777 666655333
No 404
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=20.50 E-value=1.3e+02 Score=27.92 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=28.2
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 44 FYYALSPG--LDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 44 Fv~aisPG--~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
.+|-|+|. .+-+=+..-++..+.+||+.|.+|||+..-|.
T Consensus 6 v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~ 47 (543)
T TIGR02403 6 VIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLN 47 (543)
T ss_pred EEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEEC
Confidence 46777772 11111123579999999999999999998765
No 405
>PRK12313 glycogen branching enzyme; Provisional
Probab=20.49 E-value=1.3e+02 Score=28.42 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEecC
Q psy629 27 AEHLTGLISAAKEQGIDFYYALSP 50 (166)
Q Consensus 27 l~~l~~L~~~a~~~~v~Fv~aisP 50 (166)
.+.|++||++|+++||..+.=+-|
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999999999998876655
No 406
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=20.41 E-value=5.7e+02 Score=22.19 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHc---CC-CeeEEecCCCCCCCCHHHHHHHhhH
Q psy629 29 HLTGLISAAKEQGIDFYYALSPGLD-ITYSSGKEVATLKRKLEQVAQF---GC-RGFALLFDDIESEMSEADKEVFQSF 102 (166)
Q Consensus 29 ~l~~L~~~a~~~~v~Fv~aisPG~~-~~~s~~~d~~~L~~K~~ql~~l---Gv-r~FailfDDi~~~~~~~d~~~f~~~ 102 (166)
+++.|.+.+....++...-|-+|++ +-+. .++...+.+++.++-.+ |+ .+||- .|+........|.++|...
T Consensus 102 ~l~~l~~~~~~~~~~v~l~vDtGm~R~Gi~-~~e~~~~~~~i~~~~~l~l~Gi~tH~a~-ad~~~~~~~~~Q~~~F~~~ 178 (354)
T cd06827 102 QLEWLEQAALSKPLNVWLKLDSGMHRLGFS-PEEYAAAYQRLKASPNVASIVLMTHFAC-ADEPDSPGTAKQLAIFEQA 178 (354)
T ss_pred HHHHHHHhcCCCCeEEEEEeeCCcCCCCCC-HHHHHHHHHHHHhCCCceEEEEEeeccC-CCCCCcHHHHHHHHHHHHH
Confidence 3334444433445778888889975 3333 34566666666554222 33 33432 4554433334455556443
No 407
>PHA02546 47 endonuclease subunit; Provisional
Probab=20.34 E-value=5.6e+02 Score=22.04 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC---CHHHHHHHHHH-HHHHHHcCCCeeEEec
Q psy629 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYS---SGKEVATLKRK-LEQVAQFGCRGFALLF 84 (166)
Q Consensus 24 ~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s---~~~d~~~L~~K-~~ql~~lGvr~Failf 84 (166)
++..+.|+++++.+++.++++++= -|--+... +.+....+..+ +..|.++|+.-|.|.-
T Consensus 22 ~~~~~~l~~ii~~a~~~~vD~Vli--aGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~G 84 (340)
T PHA02546 22 NYQLKFIKQAIEYSKAHGITTWIQ--LGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVG 84 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE--CCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEcc
Confidence 445678999999999999998863 34333221 22333444442 4556678999988763
No 408
>PRK07505 hypothetical protein; Provisional
Probab=20.33 E-value=3.3e+02 Score=23.52 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCeEEEEecC----CC---CCCCC---CHHHHHHHHHHHHHHHHcCC
Q psy629 31 TGLISAAKEQGIDFYYALSP----GL---DITYS---SGKEVATLKRKLEQVAQFGC 77 (166)
Q Consensus 31 ~~L~~~a~~~~v~Fv~aisP----G~---~~~~s---~~~d~~~L~~K~~ql~~lGv 77 (166)
.++.+.+.+.||-..-.-.| |. -++.. +.++++.+++.|+++.+-|.
T Consensus 345 ~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~~ 401 (402)
T PRK07505 345 IKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDEGL 401 (402)
T ss_pred HHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHhhc
Confidence 56778888889876544222 21 13333 57899999999999887764
No 409
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.26 E-value=4.1e+02 Score=22.92 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCe-EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629 28 EHLTGLISAAKEQGID-FYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 28 ~~l~~L~~~a~~~~v~-Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 83 (166)
+++.+.++.+++.|+. +..-+--|+.- +..+.+.+-++.+.++|+.++.+.
T Consensus 136 ~~~~~ai~~l~~~G~~~v~~dli~GlPg-----qt~~~~~~~l~~~~~l~~~~is~y 187 (360)
T TIGR00539 136 KNIAPAIETALKSGIENISLDLMYGLPL-----QTLNSLKEELKLAKELPINHLSAY 187 (360)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccCCCCC-----CCHHHHHHHHHHHHccCCCEEEee
Confidence 3445566666777763 33333333321 123556666778888999988764
No 410
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=20.19 E-value=1.6e+02 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCCeeEEe
Q psy629 62 VATLKRKLEQVAQFGCRGFALL 83 (166)
Q Consensus 62 ~~~L~~K~~ql~~lGvr~Fail 83 (166)
++.+..-+++|+++|+|.|.|+
T Consensus 140 ~~~~~~~v~~L~~~GAr~ilv~ 161 (281)
T cd01847 140 AADLASQVKNLLDAGARYILVP 161 (281)
T ss_pred HHHHHHHHHHHHHCCCCEEEEe
Confidence 5777788999999999999665
No 411
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=20.19 E-value=5e+02 Score=22.40 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEecCCCC----CCCC-CHHHHHHHHHHHHHHHH-cCCCeeEEecCCCCC
Q psy629 23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLD----ITYS-SGKEVATLKRKLEQVAQ-FGCRGFALLFDDIES 89 (166)
Q Consensus 23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~----~~~s-~~~d~~~L~~K~~ql~~-lGvr~FailfDDi~~ 89 (166)
+.+|++.|.+++... ..++++..-|.|+.. -+|. +.++...+.+.+.++.. -|++-.+|.|==-+.
T Consensus 107 s~~el~~l~~~~~~~-~~~~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~~~~~~~~~l~~~Glh~H~gs~ 178 (379)
T cd06841 107 SFDELERILEIAKEL-GRVAKVGIRLNMNYGNNVWSRFGFDIEENGEALAALKKIQESKNLSLVGLHCHVGSN 178 (379)
T ss_pred CHHHHHHHHHHHHhc-CCcceEEEEECCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCCCeeEEEEEecCCCc
Confidence 455666666555432 234667777778322 3343 23456666666666543 377777777654443
No 412
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=20.16 E-value=2.9e+02 Score=26.82 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCCCCC-C-HHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629 26 EAEHLTGLISAAKEQGIDFYYALSPGLDITYS-S-GKEVATLKRKLEQVAQFGCRGFALLF 84 (166)
Q Consensus 26 ~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s-~-~~d~~~L~~K~~ql~~lGvr~Failf 84 (166)
.++.|+..+....+.+. +..+|.++|.-|+ + ....++|-+.|++|.++|++..-+-.
T Consensus 297 sl~~f~~~v~~~~~~~~--~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqa 355 (671)
T PRK14582 297 SLKEFAQQIITVQEKSP--QRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQA 355 (671)
T ss_pred CHHHHHHHHhcccCCCC--EEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45566666665555665 7788999998874 3 34578999999999999999955543
No 413
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=20.10 E-value=1.2e+02 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=21.0
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHH
Q psy629 45 YYALSPGLDITYSSGKEVATLKRKLEQ 71 (166)
Q Consensus 45 v~aisPG~~~~~s~~~d~~~L~~K~~q 71 (166)
+||-|||.++.-.+++|++.|.+-|+.
T Consensus 29 vWA~s~g~~f~~~~~~E~~~i~~~f~~ 55 (129)
T smart00392 29 VWAASAGGNFQKITPEEIAAIAALFNS 55 (129)
T ss_pred eeeccCCCCCCcCCHHHHHHHHHHccC
Confidence 799999866544457889999988865
No 414
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=20.04 E-value=2.2e+02 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCCeeEEecC
Q psy629 63 ATLKRKLEQVAQFGCRGFALLFD 85 (166)
Q Consensus 63 ~~L~~K~~ql~~lGvr~FailfD 85 (166)
+...+||+.+.++||++|.+.+.
T Consensus 289 e~v~e~l~~~~~~Gv~~~~l~~~ 311 (330)
T TIGR03842 289 EAHIEKLRELRALGVDQFAIYLQ 311 (330)
T ss_pred HHHHHHHHHHHHcCCceEEEeCC
Confidence 56778899999999999988764
Done!