RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy629
(166 letters)
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain
{Clostridium perfringens [TaxId: 1502]}
Length = 317
Score = 177 bits (449), Expect = 3e-56
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 9/167 (5%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS-- 58
+++Y+YAPKDD HR WR+ Y E + + LI+A+ E +DF + +SPG+DI +
Sbjct: 32 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 91
Query: 59 -GKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
++ L K E + G R FA+ +DDI+ + + +V F V +V
Sbjct: 92 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 147
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+ PT+Y + V N + Y + I++MWTGP V
Sbjct: 148 --KPLITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 192
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 162 bits (411), Expect = 1e-50
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 32 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 90
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FDDI E + K A + + +
Sbjct: 91 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK-----QAELLNYIDEKFAQVKPD 145
Query: 120 -PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+ ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 146 INQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 188
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644)
{Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 27.4 bits (60), Expect = 0.71
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 112 EVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTG 161
E L P + + S R E LG LA+ + TG
Sbjct: 26 ETLSELQVP----LVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTG 71
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 26.9 bits (58), Expect = 1.0
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 4/111 (3%)
Query: 24 VEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL 83
V++ HL L + + I A + YS GK+ A + + G F ++
Sbjct: 2 VDKLTHLKQLEAESIHI-IREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVM 60
Query: 84 FDDIESEMSEAD---KEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCS 131
D + E ++ + ++ N G F ++
Sbjct: 61 HVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTD 111
>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
typhimurium [TaxId: 90371]}
Length = 291
Score = 26.2 bits (57), Expect = 2.3
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHL---------TGLISAAKEQGIDFYYALSPG 51
++ + P+ K + + +E A+ + L+
Sbjct: 158 IEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGH 217
Query: 52 LDITY---SSGKEVATLKRKLEQVAQFGCRGFA 81
+++ + SSG + R + + G GF
Sbjct: 218 INMPWVILSSGVDEKLFPRAVRVAMEAGASGFL 250
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 25.0 bits (53), Expect = 4.6
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 12 YKHRAYWRDLYSVEEAEHLTGLISAAK 38
++H +W+ + ++ + +L GL K
Sbjct: 226 FEHPGFWQPMDTLRDKVYLEGLWEKGK 252
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 24.9 bits (54), Expect = 5.5
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 1 MDSYLYAPKDDYKH-RAYWRDLYSVEEAEHL 30
+ + A D+ RA++ ++ + E+ + L
Sbjct: 425 VRRFNTANDDNVTQVRAFYVNVLNEEQRKRL 455
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 24.9 bits (54), Expect = 5.8
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 10 DDYK-HRAYWRDLYSVEEAEHL 30
DD+ R+++S +E +
Sbjct: 420 DDFGQAGTLVREVFSDQERDDF 441
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 23.8 bits (51), Expect = 7.2
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 118 GQPKFMLCPTQYCSTRAVPNV 138
G+ + CP +YC R PNV
Sbjct: 18 GELFKIECPVKYCVHR--PNV 36
>d1ulva4 b.30.5.5 (A:2-273) Glucodextranase, domain N {Arthrobacter
globiformis [TaxId: 1665]}
Length = 272
Score = 24.0 bits (52), Expect = 10.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 30 LTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQ 74
TG I A +F AL G D + A+L ++V++
Sbjct: 213 QTGQIPLAAGGKTEFSLALGFGADTAEALATAKASLGTGYKKVSK 257
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,399
Number of extensions: 24384
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 13
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)