BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6291
         (79 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9VJ38|RM13_DROME 39S ribosomal protein L13, mitochondrial OS=Drosophila melanogaster
           GN=mRpL13 PE=2 SV=2
          Length = 178

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 53/78 (67%)

Query: 2   LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           +VMKKAV   +  +L +   M RLH+F D +VPE++L+NV++QIR  R +P+ L     +
Sbjct: 101 MVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRLDHIDKE 160

Query: 62  EVDEFPKINDFPKDYILK 79
            ++ FP I D+PKDYIL+
Sbjct: 161 TLENFPNIMDYPKDYILR 178


>sp|Q3SYS1|RM13_BOVIN 39S ribosomal protein L13, mitochondrial OS=Bos taurus GN=MRPL13
           PE=1 SV=1
          Length = 178

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 55/76 (72%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           ++K A+   LP++L +  LM RLH+FPD+++PED+LKN++ ++ Q R VPR L  Y+ +E
Sbjct: 103 IVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEE 162

Query: 63  VDEFPKINDFPKDYIL 78
           ++ FP++   P+DY L
Sbjct: 163 IEAFPRVWSPPEDYRL 178


>sp|Q9BYD1|RM13_HUMAN 39S ribosomal protein L13, mitochondrial OS=Homo sapiens GN=MRPL13
           PE=1 SV=1
          Length = 178

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 53/76 (69%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           ++K A+   LP++L +  +M RLH+FPD+ +PED+LKN+  ++ Q R +P+ L  Y+ +E
Sbjct: 103 IVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEE 162

Query: 63  VDEFPKINDFPKDYIL 78
           +D FP++   P+DY L
Sbjct: 163 IDAFPRLWTPPEDYRL 178


>sp|Q9D1P0|RM13_MOUSE 39S ribosomal protein L13, mitochondrial OS=Mus musculus GN=Mrpl13
           PE=2 SV=1
          Length = 178

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 52/74 (70%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKE 62
           ++K A+   LP++L +  +M RLH+FPD+++PED+LKN+  ++ Q R VP+ L  Y+ +E
Sbjct: 103 IVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEE 162

Query: 63  VDEFPKINDFPKDY 76
           ++ FP++   P D+
Sbjct: 163 IEAFPRVWTPPDDF 176


>sp|Q7S2X0|FYV10_NEUCR Protein fyv-10 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
           / CBS 708.71 / DSM 1257 / FGSC 987) GN=fyv-10 PE=3 SV=1
          Length = 410

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 27/37 (72%)

Query: 34  PEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKIN 70
           PED++KN+ + I ++R + R L++Y+++E   + +++
Sbjct: 65  PEDVVKNLDTMIAKMRGMKRKLSTYANEETRLYKQLD 101


>sp|Q38X24|CARB_LACSS Carbamoyl-phosphate synthase large chain OS=Lactobacillus sakei
           subsp. sakei (strain 23K) GN=carB PE=3 SV=1
          Length = 1060

 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 30  DQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVDEFPKINDFP 73
           DQ    +L KN+ +Q+ +  P+P +  ++S  +  EF K N FP
Sbjct: 124 DQAEDRELFKNLMNQLNE--PIPESAIAHSLDDAQEFVKQNGFP 165


>sp|B6HAN0|AMPP2_PENCW Probable Xaa-Pro aminopeptidase Pc16g13390 OS=Penicillium
           chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin
           54-1255) GN=Pc16g13390 PE=3 SV=1
          Length = 505

 Score = 29.3 bits (64), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 7   AVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDK 61
           ++++EL   L + +  + L++  D E PE L K++   + QLRP   T     D+
Sbjct: 151 SLKYELQAWLDERKQGSELYLIHDSEKPEHLPKDLPLNLEQLRPAMDTARGVKDE 205


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.140    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,177,205
Number of Sequences: 539616
Number of extensions: 925873
Number of successful extensions: 2872
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2864
Number of HSP's gapped (non-prelim): 10
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)