Query psy6291
Match_columns 79
No_of_seqs 107 out of 411
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:41:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_H L13MT, MRP-L13, 39S rib 99.6 8.2E-17 2.8E-21 112.4 3.0 47 2-48 102-148 (148)
2 3r8s_J 50S ribosomal protein L 99.5 1.5E-14 5.3E-19 100.4 3.0 35 2-36 99-133 (142)
3 3v2d_N 50S ribosomal protein L 99.5 1.9E-14 6.5E-19 99.7 3.2 35 2-36 97-131 (140)
4 1j3a_A 50S ribosomal protein L 99.4 7.4E-14 2.5E-18 96.5 3.3 35 2-36 73-108 (142)
5 3f1f_N 50S ribosomal protein L 99.4 6E-14 2.1E-18 99.5 2.8 35 2-36 120-154 (163)
6 2zjr_G 50S ribosomal protein L 99.4 9.9E-14 3.4E-18 99.2 3.6 35 2-36 125-159 (174)
7 3bbo_L Ribosomal protein L13; 99.4 6.9E-14 2.3E-18 104.7 1.8 45 2-46 198-242 (250)
8 3jyw_M 60S ribosomal protein L 99.3 3.6E-13 1.2E-17 96.2 1.7 35 2-36 72-107 (178)
9 4a17_I RPL13A, 60S ribosomal p 99.3 8E-13 2.7E-17 95.8 3.4 35 2-36 77-112 (198)
10 3iz5_K 60S ribosomal protein L 99.3 8.1E-13 2.8E-17 96.3 2.6 35 2-36 83-118 (206)
11 1vq8_J 50S ribosomal protein L 99.3 1.8E-12 6.2E-17 90.1 3.6 33 2-34 77-110 (145)
12 2zkr_j 60S ribosomal protein L 99.3 1.2E-12 4.1E-17 95.2 2.8 35 2-36 78-113 (203)
13 4b6a_O 60S ribosomal protein L 99.3 1.8E-12 6.2E-17 94.1 3.8 35 2-36 78-113 (199)
14 1dul_A Signal recognition part 50.2 5.2 0.00018 24.1 0.9 21 50-71 14-34 (69)
15 2dkz_A Hypothetical protein LO 36.9 6.3 0.00022 25.0 -0.3 28 50-77 10-37 (84)
16 1hq1_A Signal recognition part 32.9 14 0.00047 23.7 0.9 22 49-71 47-68 (105)
17 2eo2_A Adult MALE hypothalamus 32.5 11 0.00036 23.3 0.2 20 55-74 47-66 (71)
18 2jqe_A SRP54, signal recogniti 31.5 14 0.00047 24.3 0.7 20 51-71 58-77 (119)
19 2eap_A Lymphocyte cytosolic pr 27.8 25 0.00086 22.4 1.4 18 53-70 51-68 (90)
20 2kbw_B BH3-interacting domain 22.8 45 0.0015 17.8 1.6 21 29-49 3-23 (35)
21 2fho_A Spliceosomal protein SF 22.0 33 0.0011 19.5 1.0 28 50-77 14-45 (47)
22 2ebo_A Ebola virus envelope gl 20.9 15 0.00051 22.6 -0.7 17 33-49 55-71 (74)
No 1
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.63 E-value=8.2e-17 Score=112.38 Aligned_cols=47 Identities=40% Similarity=0.704 Sum_probs=44.4
Q ss_pred hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHHHhhHHHhhhcc
Q psy6291 2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQL 48 (79)
Q Consensus 2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~~~Ni~~~~~q~ 48 (79)
+||++||+||||||.+||.+|+|||||+|++|||+.++|+.-.+.|+
T Consensus 102 ~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~~~ 148 (148)
T 2ftc_H 102 AIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQP 148 (148)
T ss_pred HHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccCCC
Confidence 68999999999999999999999999999999999999998877764
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=99.47 E-value=1.5e-14 Score=100.36 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||||.+||.+|+|||||+|++|||+
T Consensus 99 ~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~ 133 (142)
T 3r8s_J 99 RVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHA 133 (142)
T ss_dssp HHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCG
T ss_pred HHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcc
Confidence 68999999999999999999999999999999985
No 3
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=99.46 E-value=1.9e-14 Score=99.73 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||+|.+||.+|+|||||+|++|||+
T Consensus 97 ~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~ 131 (140)
T 3v2d_N 97 RVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ 131 (140)
T ss_dssp HHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCG
T ss_pred HHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcc
Confidence 68999999999999999999999999999999985
No 4
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=99.41 E-value=7.4e-14 Score=96.55 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+|||| ||.+||.+|+|||||+|++|||+
T Consensus 73 ~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~ 108 (142)
T 1j3a_A 73 EIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQ 108 (142)
T ss_dssp HHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGT
T ss_pred HHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCcc
Confidence 689999999999 99999999999999999999974
No 5
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=99.41 E-value=6e-14 Score=99.49 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||||.+||.+|+|||||+|++|||+
T Consensus 120 ~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~ 154 (163)
T 3f1f_N 120 RVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ 154 (163)
T ss_dssp HHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCC
T ss_pred HHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcc
Confidence 68999999999999999999999999999999974
No 6
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=99.40 E-value=9.9e-14 Score=99.15 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||||.|||.+|+|||||+|++|||+
T Consensus 125 ~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~ 159 (174)
T 2zjr_G 125 RVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHS 159 (174)
T ss_dssp HHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGG
T ss_pred HHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChh
Confidence 68999999999999999999999999999999974
No 7
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.39 E-value=6.9e-14 Score=104.67 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=37.6
Q ss_pred hHHHHHHHhcCCCChhHHHHHhhccccCCCCChHHHHhhHHHhhh
Q psy6291 2 LVMKKAVRWELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIR 46 (79)
Q Consensus 2 ~il~~AV~gMLPkn~lrr~~m~RL~Vy~g~~hph~~~~Ni~~~~~ 46 (79)
+||++||+||||||+|||.+|+|||||+|++|||+-++++.-.+.
T Consensus 198 rIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia 242 (250)
T 3bbo_L 198 RIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLR 242 (250)
T ss_dssp HHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSCC------
T ss_pred HHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCHHHcCCeeechh
Confidence 699999999999999999999999999999999988877654343
No 8
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.31 E-value=3.6e-13 Score=96.20 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=33.3
Q ss_pred hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+|||| ||.+||.+|+|||||+|++|||+
T Consensus 72 ~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~ 107 (178)
T 3jyw_M 72 RIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYD 107 (178)
T ss_dssp THHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSC
T ss_pred HHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchh
Confidence 699999999999 69999999999999999999985
No 9
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.31 E-value=8e-13 Score=95.83 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=33.2
Q ss_pred hHHHHHHHhcCCC-ChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPk-n~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||+ |.+||.+|+|||||+|++|||+
T Consensus 77 rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~ 112 (198)
T 4a17_I 77 RIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYD 112 (198)
T ss_dssp HHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGT
T ss_pred HHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChh
Confidence 6899999999995 9999999999999999999985
No 10
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.29 E-value=8.1e-13 Score=96.33 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=33.3
Q ss_pred hHHHHHHHhcCCC-ChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPk-n~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||+ |.+||.+|+|||||+|++|||+
T Consensus 83 ~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~ 118 (206)
T 3iz5_K 83 KILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYD 118 (206)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCC
T ss_pred HHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChh
Confidence 6899999999997 8999999999999999999975
No 11
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.28 E-value=1.8e-12 Score=90.06 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=32.3
Q ss_pred hHHHHHHHhcCC-CChhHHHHHhhccccCCCCCh
Q psy6291 2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVP 34 (79)
Q Consensus 2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hp 34 (79)
+||++||+|||| ||++||.+|+|||||+|++||
T Consensus 77 ~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p 110 (145)
T 1vq8_J 77 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD 110 (145)
T ss_dssp HHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS
T ss_pred HHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC
Confidence 689999999999 999999999999999999999
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.28 E-value=1.2e-12 Score=95.19 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=33.4
Q ss_pred hHHHHHHHhcCCC-ChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELPR-SLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLPk-n~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+||||+ |.+|+.+|+||+||+|++|||+
T Consensus 78 ~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~ 113 (203)
T 2zkr_j 78 RIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYD 113 (203)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSS
T ss_pred HHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchh
Confidence 6899999999999 7999999999999999999975
No 13
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=99.28 E-value=1.8e-12 Score=94.06 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCC-CChhHHHHHhhccccCCCCChHH
Q psy6291 2 LVMKKAVRWELP-RSLIKFRLMARLHIFPDQEVPED 36 (79)
Q Consensus 2 ~il~~AV~gMLP-kn~lrr~~m~RL~Vy~g~~hph~ 36 (79)
+||++||+|||| ||.+|+.+|+||+||+|.+|||+
T Consensus 78 ~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~ 113 (199)
T 4b6a_O 78 RILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYD 113 (199)
T ss_dssp HHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGG
T ss_pred HHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcc
Confidence 689999999999 89999999999999999999985
No 14
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=50.23 E-value=5.2 Score=24.11 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.8
Q ss_pred CcchhhccCCHHHHhhCCCCCC
Q psy6291 50 PVPRTLASYSDKEVDEFPKIND 71 (79)
Q Consensus 50 ~vpk~l~~y~~eE~~~fPkl~~ 71 (79)
++-.=+++.|++|+++ |+|++
T Consensus 14 r~~aII~SMT~~Er~n-P~ii~ 34 (69)
T 1dul_A 14 RMEAIINSMTMKERAK-PEIIK 34 (69)
T ss_dssp HHHHHHHTSCHHHHHC-GGGCC
T ss_pred HHHHHHHcCCHHHHhC-ccccC
Confidence 3445678999999998 98875
No 15
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.95 E-value=6.3 Score=24.96 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.2
Q ss_pred CcchhhccCCHHHHhhCCCCCCCCCccc
Q psy6291 50 PVPRTLASYSDKEVDEFPKINDFPKDYI 77 (79)
Q Consensus 50 ~vpk~l~~y~~eE~~~fPkl~~~~~d~~ 77 (79)
++|+-|+.+|.+|+.++=+...-+++++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~igL~e~vv 37 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFIGLSEDVI 37 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGTCCCHHHH
T ss_pred CCchhhhhcCHHHHHHHHHHcCCcHHHH
Confidence 4799999999999999988888887653
No 16
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=32.90 E-value=14 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.2
Q ss_pred CCcchhhccCCHHHHhhCCCCCC
Q psy6291 49 RPVPRTLASYSDKEVDEFPKIND 71 (79)
Q Consensus 49 ~~vpk~l~~y~~eE~~~fPkl~~ 71 (79)
.++..=+++.|++|+++ |+|.+
T Consensus 47 kr~~aII~SMT~~Er~~-P~ii~ 68 (105)
T 1hq1_A 47 VRMEAIINSMTMKERAK-PEIIK 68 (105)
T ss_dssp HHHHHHHHTSCHHHHHC-GGGCC
T ss_pred HHHHHHHHcCCHHHhhC-hhhcC
Confidence 33555678999999998 98874
No 17
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.55 E-value=11 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.3
Q ss_pred hccCCHHHHhhCCCCCCCCC
Q psy6291 55 LASYSDKEVDEFPKINDFPK 74 (79)
Q Consensus 55 l~~y~~eE~~~fPkl~~~~~ 74 (79)
.+++|+||+..|-+|-.=|+
T Consensus 47 P~~LT~eEi~~FaRLdIDP~ 66 (71)
T 2eo2_A 47 PSTLTEEEVRKFARLNIDPA 66 (71)
T ss_dssp TTTCCHHHHHHHHHTCCCST
T ss_pred cccCCHHHHhhceecccCcc
Confidence 37899999999998866554
No 18
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=31.51 E-value=14 Score=24.27 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.2
Q ss_pred cchhhccCCHHHHhhCCCCCC
Q psy6291 51 VPRTLASYSDKEVDEFPKIND 71 (79)
Q Consensus 51 vpk~l~~y~~eE~~~fPkl~~ 71 (79)
+..=+++.|++|+++ |+|.+
T Consensus 58 ~~aII~SMT~~Er~~-P~ii~ 77 (119)
T 2jqe_A 58 FRVIMDSMTEEELLN-PKIID 77 (119)
T ss_dssp HHHHHHHSCHHHHHC-GGGCC
T ss_pred HHHHHHhCCHHHHhC-hhhcC
Confidence 445578999999998 98875
No 19
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.76 E-value=25 Score=22.44 Aligned_cols=18 Identities=17% Similarity=0.643 Sum_probs=15.0
Q ss_pred hhhccCCHHHHhhCCCCC
Q psy6291 53 RTLASYSDKEVDEFPKIN 70 (79)
Q Consensus 53 k~l~~y~~eE~~~fPkl~ 70 (79)
++|=.+|++.+++||||.
T Consensus 51 ~~lL~LtE~Dlrk~Pkl~ 68 (90)
T 2eap_A 51 ARFLNLTENDIQKFPKLR 68 (90)
T ss_dssp HHHHTCCHHHHTTSCTTT
T ss_pred hhhhcccHHHhccCCccc
Confidence 345679999999999985
No 20
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=22.79 E-value=45 Score=17.82 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=16.1
Q ss_pred CCCCChHHHHhhHHHhhhccC
Q psy6291 29 PDQEVPEDLLKNVSSQIRQLR 49 (79)
Q Consensus 29 ~g~~hph~~~~Ni~~~~~q~~ 49 (79)
+|+++..++..+|..++.|..
T Consensus 3 ~dse~qe~~i~~ia~qla~ig 23 (35)
T 2kbw_B 3 LGSESQEDIIRNIARHLAQVG 23 (35)
T ss_dssp --CCCHHHHHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHccchh
Confidence 588999999999988887764
No 21
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.02 E-value=33 Score=19.47 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=20.9
Q ss_pred CcchhhccCCHHHHhh-CC---CCCCCCCccc
Q psy6291 50 PVPRTLASYSDKEVDE-FP---KINDFPKDYI 77 (79)
Q Consensus 50 ~vpk~l~~y~~eE~~~-fP---kl~~~~~d~~ 77 (79)
++..|-.-+|+||++. +| ++.+.|.+|.
T Consensus 14 ei~~rnrpltDEeLD~~LP~GY~il~pP~~Y~ 45 (47)
T 2fho_A 14 EIDERNRPLSDEELDAMFPEGYKVLPPPAGYV 45 (47)
T ss_dssp CCCCCCCCSCTTHHHHHSCTTEEECCCCTTCC
T ss_pred ccccccCCCCHHHHHHhCCCCCeecCCCCCCC
Confidence 3555556689999987 56 7788888885
No 22
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=20.87 E-value=15 Score=22.57 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.3
Q ss_pred ChHHHHhhHHHhhhccC
Q psy6291 33 VPEDLLKNVSSQIRQLR 49 (79)
Q Consensus 33 hph~~~~Ni~~~~~q~~ 49 (79)
-||+.-+||+.+|.|+.
T Consensus 55 ~~~d~tknitd~idqi~ 71 (74)
T 2ebo_A 55 EPHDWTKNITDKIDQII 71 (74)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred CHHHHhhhHHHHHHHHh
Confidence 38889999999998863
Done!