RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6291
         (79 letters)



>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score = 34.6 bits (79), Expect = 3e-04
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36
           V++ AV   LP+      +  RL ++  +  P  
Sbjct: 97  VIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHS 130


>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 139

 Score = 33.9 bits (77), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36
           V++ AV+  LP+  +  RL  RL ++   + P  
Sbjct: 98  VLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQ 131


>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
           [TaxId: 562]}
          Length = 140

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 3   VMKKAVRWELPRSLIKFRLMARLHIFPDQEVPED 36
           V++ AV+  LP+  +   +  +L ++   E    
Sbjct: 100 VIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHA 133


>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 197

 Score = 25.2 bits (55), Expect = 0.78
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 11 ELPRSLIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLRPVPRTLASYSDKEVD 64
          ++P +++K    A+L     +E+PE+  K V+    +L    + +  + D EVD
Sbjct: 14 KIPDNVLK----AKLGFGGAEEIPEEFRKTVNRAYEELLDAAKPVVLWRDFEVD 63


>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
           {Haemophilus influenzae [TaxId: 727]}
          Length = 252

 Score = 23.7 bits (51), Expect = 2.8
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 16  LIKFRLMARLHIFPDQEVPEDLLKNVSSQIRQLR 49
           L+      R  +     VP  L+     +IR+ R
Sbjct: 177 LLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWR 210


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
          ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 23.8 bits (50), Expect = 3.1
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 50 PVPRTLASYSDKEVDEFPKINDFP 73
          P P+T  +   +E     +   +P
Sbjct: 14 PQPKTALATDREEALRLMEAFGYP 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.408 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,125
Number of extensions: 11827
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 10
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)