BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy63
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 93/185 (50%), Gaps = 15/185 (8%)
Query: 338 RNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKS 397
+ + C C K F+ L EH+R H KPY+C CG S KK
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGE---------------KPYKCPECGKSFSDKKD 64
Query: 398 LDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSH 457
L H R HTGEK Y C +CG SF+Q A+L H+ +H+ + C CGK++ HLR+H
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 458 LNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
THT ++ Y C CGK F + + L +H TH +P+ C C F + L+ H RTH
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 518 KRKDT 522
K T
Sbjct: 185 TGKKT 189
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 15/186 (8%)
Query: 308 GEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRK 367
GEK Y C CGK F + H TH+ + ++C C K F +++K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF--------------SDKK 63
Query: 368 NMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLF 427
++ HQR H KPY+C CG S + +L H R HTGEK Y C +CG SF+Q A L
Sbjct: 64 DLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 428 YHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLT 487
H+ +H+ + C CGK++ ++L +H THT ++ Y C CGK F + + L H
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 488 THLAAR 493
TH +
Sbjct: 183 THTGKK 188
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 373 QRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFS 432
Q ++ KPY C CG S L +H R HTGEK Y C +CG SF+ L H+ +
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 433 HSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAA 492
H+ + C CGK++ +LR+H THT ++ Y C CGK F +L L++H TH
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
+P+ C C F + +L H RTH + + ++C C ++F L
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGE--------------KPYKCPECGKSFSRRDAL 177
Query: 553 KLHMRIHTGEK 563
+H R HTG+K
Sbjct: 178 NVHQRTHTGKK 188
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 88/195 (45%), Gaps = 30/195 (15%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRH 275
C CGK F L EH HT ++P+ C C +F KK L RH
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL--------------TRH 68
Query: 276 TNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
HTG Y+C CG+ + R NL+ H R HTGEK Y C CGK F Q + H TH
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 335 SESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSS 394
+ + ++C C K F+ L H+R H KPY+C CG S
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGE---------------KPYKCPECGKSFSR 173
Query: 395 KKSLDDHYRIHTGEK 409
+ +L+ H R HTG+K
Sbjct: 174 RDALNVHQRTHTGKK 188
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
Y C CG+ + +L H R HTGEK Y C CGK F H TH+ + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 344 VCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYR 403
C K F+ A LR H+R H KPY C CG S L H R
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGE---------------KPYACPECGKSFSQLAHLRAHQR 126
Query: 404 IHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTK 463
HTGEK Y C +CG SF++ +L H+ +H+ + C CGK++ + L H THT
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Query: 464 KR 465
K+
Sbjct: 187 KK 188
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
YAC ECGKSF L H + H G++ C CG+++ K L +H + H+ +
Sbjct: 22 YACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK---- 76
Query: 62 AIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHI 121
YKCP+C + ++H H EK Y C C K F + +L H
Sbjct: 77 -----------PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSH 181
+ H + ++C CGK+F+ N+ H R HTGEK Y C CG SF+ +LNVH +H
Sbjct: 126 R-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 182 TN 183
T
Sbjct: 185 TG 186
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 17/190 (8%)
Query: 123 AVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
A+ + + C CGK+F+ ++ H R HTGEK Y C CG SF+ L H +HT
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 183 NTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDR 241
+ + C CG ++ L +H R +HT + C CGK F L+ H HT ++
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 242 PFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGP-GYQCNICGRVMNDRTNLK 300
P+ C C +F E++L+ H HTG Y+C CG+ + R L
Sbjct: 133 PYKCPECGKSF--------------SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178
Query: 301 VHMRNHTGEK 310
VH R HTG+K
Sbjct: 179 VHQRTHTGKK 188
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
Query: 95 IHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 154
+ EK Y C C K F R+ +L H + H + ++C CGK+F+D ++ H R HT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 155 GEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQ 213
GEK Y C CG SF+ +L H +HT + + C CG ++ L +H R +HT +
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEK 132
Query: 214 KSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C CGK F + L H HT ++P+ C C +F + L H + H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 404 IHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTK 463
+ GEK Y C +CG SF++ L H+ +H+ + C CGK++ + L H THT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTL 523
++ Y C CGK F + L++H TH +P+ C C F HL H RTH +
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE--- 131
Query: 524 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENISAQFAV 580
+ ++C C ++F NL H R HTGEK Y ++ S + A+
Sbjct: 132 -----------KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
YAC ECGKSF L AH + H G++ C CG+++ + +L+ H + H+ +
Sbjct: 106 YACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK---- 160
Query: 62 AIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEK 100
YKCP+C H H +K
Sbjct: 161 -----------PYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 379 LLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+ KPY+C CG S +L H R HTGEK Y C +CG SF+Q + L H+ +H+ +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKR 465
C CGK++ +HL H TH K+
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 98 VEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 157
+EK Y C C K F ++ NL H + H + ++C CGK+F+ ++++ H R HTGEK
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 158 KYVCETCGASFALWGSLNVHSYSHTN 183
Y C CG SF+ L+ H +H N
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
Y+C CG+ + +NL+ H R HTGEK Y C CGK F Q S H TH+ + ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 344 VCDKKFATPAGLREHKRVH 362
C K F+ L H+R H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFC 500
C CGK++ ++L+ H THT ++ Y C CGK F + L+ H TH +P+ C C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 501 SAGFKTKKHLSQHHRTHKRK 520
F HLS+H RTH+ K
Sbjct: 67 GKSFSRSDHLSRHQRTHQNK 86
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FV 187
+ ++C CGK+F+ +N++ H R HTGEK Y C CG SF+ L H +HT + +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 188 CSYCGNTYKNPKALTSHIR 206
C CG ++ L+ H R
Sbjct: 63 CPECGKSFSRSDHLSRHQR 81
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLY 467
EK Y C +CG SF+Q ++L H+ +H+ + C CGK++ + L+ H THT ++ Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 468 VCETCGKEFMKLELLKSHLTTH 489
C CGK F + + L H TH
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 338 RNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKS 397
+ ++C C K F+ + L++H+R H KPY+C CG S
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGE---------------KPYKCPECGKSFSQSSD 47
Query: 398 LDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
L H R HTGEK Y C +CG SF++ L H+ +H
Sbjct: 48 LQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 309 EKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKN 368
EK Y C CGK F Q S+ H TH+ + ++C C K F+ + L++H+R H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE--- 58
Query: 369 MIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C CG S L H R H +K
Sbjct: 59 ------------KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGP-GYQCNICGRVMNDRTN 298
++P+ C C +F ++L +H HTG Y+C CG+ + ++
Sbjct: 2 EKPYKCPECGKSFS--------------QSSNLQKHQRTHTGEKPYKCPECGKSFSQSSD 47
Query: 299 LKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
L+ H R HTGEK Y C CGK F + H TH
Sbjct: 48 LQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
+ C CG ++ L H R +HT + C CGK F L++H HT ++P+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 246 NMCPSTFKLKKHLRQHYKVH 265
C +F HL +H + H
Sbjct: 64 PECGKSFSRSDHLSRHQRTH 83
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTL 523
++ Y C CGK F + L+ H TH +P+ C C F L +H RTH T
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH----TG 57
Query: 524 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
E + ++C C ++F +L H R H +K
Sbjct: 58 E----------KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSH 92
C CG+++ +L +H + H+ + YKCP+C S + H
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEK---------------PYKCPECGKSFSQSSDLQKH 51
Query: 93 LDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVR 129
H EK Y C C K F R+ +L H + H+N +
Sbjct: 52 QRTHTGEKPYKCPECGKSFSRSDHLSRHQR-THQNKK 87
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
+P+ C C F +L +H RTH T E + ++C C ++F +L
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH----TGE----------KPYKCPECGKSFSQSSDL 48
Query: 553 KLHMRIHTGEKKY 565
+ H R HTGEK Y
Sbjct: 49 QKHQRTHTGEKPY 61
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
Y C ECGKSF L H + H G++ C CG+++ L +H + H+ +
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK---- 59
Query: 62 AIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEK 100
YKCP+C H H +K
Sbjct: 60 -----------PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 101 EYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYV 160
+ C IC K F R+ L H+ +H + R + C CGK F ++MK H IHTGEK +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 161 CETCGASFALWGSLNVHSYSHTN 183
C+ CG +F+ +L HS HT
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C +CGK F+ L H+ +H+ RP+ C C F K ++ +HT
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMK--------------KHT 49
Query: 277 NIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTG 308
IHTG ++C +CG+ + +NL H R HTG
Sbjct: 50 FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ C ICG+ + L H+ H+ + Y C+ CGK F Q S H F H+ + +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 344 VCDKKFATPAGLREHKRVHV 363
VC K F+ + L H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFC 500
C CGK++K + L +HL H+ R Y C+ CGK F + +K H H +P C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 501 SAGFKTKKHLSQHHRTH 517
F +L H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 339 NFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSL 398
+F C +C K F + L H +H R PY C CG K +
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTR---------------PYPCQYCGKRFHQKSDM 45
Query: 399 DDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
H IHTGEK + CQ CG +F+Q ++L H H+
Sbjct: 46 KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 312 YICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMID 371
+ C++CGK F + S+ H+ HS++R + C C K+F + +++H +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE------ 55
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTG 407
KP++C CG S +L H R HTG
Sbjct: 56 ---------KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 411 YVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCE 470
+ C+ CG SF + ++L H HS+TR C YCGK + + ++ H HT ++ + C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 471 TCGKEFMKLELLKSHLTTHLA 491
CGK F + L +H H
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENH 526
+ C+ CGK F + L +HL H RP+ C++C F K + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH------------- 48
Query: 527 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG 561
+H + +C+VC +AF NL H R HTG
Sbjct: 49 -TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 73 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQ 132
S+ C C S +HL IH+ + Y C C K F + ++ H +H + H+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHK 59
Query: 133 CSVCGKAFADITNMKVHMRIHTG 155
C VCGKAF+ +N+ H R HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCS 442
++C CG +L H IH+ + Y CQ CG F Q + + H F H+ + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 443 YCGKTYKNPNHLRSHLNTHT 462
CGK + ++L +H HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
F C CG ++K L++H+ H+ + C CGK F K +K+H +HT ++P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 246 NMCPSTFKLKKHLRQHYKVH 265
+C F +L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSH 92
C CG+++K +L+ H+ IHSD R Y C C S K H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTR---------------PYPCQYCGKRFHQKSDMKKH 48
Query: 93 LDIHNVEKEYFCHICKKVFLRNRNLVCH 120
IH EK + C +C K F ++ NL+ H
Sbjct: 49 TFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 159 YVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKSIC 217
+ C+ CG SF +L+ H H++T+ + C YCG + + H HT + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 218 DVCGKEFRMKRQLKEHMAVHT 238
VCGK F L H HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++ KR TL H+ +H R + C+ C + F ++K H IHTGEK +
Sbjct: 9 KSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
+ C+ CGKSFK L H L+H + C CG+ + K + +H IH+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
Y C+ CGK F K + H +H G++ C CG+ + +L H + H+
Sbjct: 30 YPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 384 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQ---V 440
EC TC SK L H R HTGEK + C +CG + + +L H+ + R++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHL 486
CS C +T++ LR H+ +HT + Y C +C ++FM+ + L+SH+
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 27/131 (20%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYC 191
+C C K F +KVH R HTGEK + C CG +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY----------------------- 45
Query: 192 GNTYKNPKALTSHIRN-SHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
++ L RN + Q C VC + FR + +L+ HM HT + P+ C+ C
Sbjct: 46 ---FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
Query: 251 TFKLKKHLRQH 261
F KK L+ H
Sbjct: 103 QFMQKKDLQSH 113
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 283 GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRN--- 339
G +C C + + LKVH R HTGEK + C CGK + + + H + +R+
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLD 399
F C+VC + F LR H M+ H + PY+C +C KK L
Sbjct: 67 FTCSVCQETFRRRMELRLH----------MVSHTGEM-----PYKCSSCSQQFMQKKDLQ 111
Query: 400 DHY-RIHTG 407
H ++H+G
Sbjct: 112 SHMIKLHSG 120
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 75 KCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREH--Q 132
+CP C +S K H H EK + C C K + R NL+ H N E
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 177
CSVC + F +++HM HTGE Y C +C F L H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 469 CETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMK 528
C TC K+F+ LK H H +PF C C + K++L +H +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN----------- 58
Query: 529 AVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++ + F C VC F L+LHM HTGE Y
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAI 63
C C K F +K L H H G++ C CG+ Y K +L +H A
Sbjct: 10 CPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEH-----------EAR 57
Query: 64 HVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKA 123
+ N +++V + C C + H+ H E Y C C + F++ ++L H+
Sbjct: 58 NCMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Query: 124 VH 125
+H
Sbjct: 117 LH 118
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 538 QCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+C C + F Y LK+H R HTGEK +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPF 36
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 2 YACEECGKSFKTKIQLCAH--KELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGK 59
+ C +CGK + K L H + ++ +Q C C T++ + L HM H+
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG---- 91
Query: 60 KNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHL 93
++ YKC CS + +SH+
Sbjct: 92 -----------EMPYKCSSCSQQFMQKKDLQSHM 114
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + +TNL H+R HTG+K + C +C + F Q +S H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFAT H ++H+
Sbjct: 65 CDICGRKFATLHTRTRHTKIHL 86
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ TN+ H+RIHTG+K + C C +F+ SLN H +HT +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHT 210
F C CG + T H R HT
Sbjct: 63 FACDICGRKF-----ATLHTRTRHT 82
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F + NL HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA + H+ H
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIH 85
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 30/114 (26%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S K +LD H RIHTG+K + C+ C +F+Q ASL H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH------- 53
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
+ THT ++ + C+ CG++F L H HL
Sbjct: 54 ---------------------IRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 266 LKMENHLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQW 324
+ +L+ H IHTG +QC IC R + + +L H+R HTGEK + C++CG+ F
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATL 75
Query: 325 SSHYYHMFTHSESRN 339
+ H H ++
Sbjct: 76 HTRTRHTKIHLRQKD 90
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ L H R+H KP++C C S +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQ---------------KPFQCRICMRNFSQQ 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASF 420
SL+ H R HTGEK + C CG F
Sbjct: 48 ASLNAHIRTHTGEKPFACDICGRKF 72
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + +L +H+ HT ++ + C C + F + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F T ++H + H R+
Sbjct: 72 FATLHTRTRHTKIHLRQ 88
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + L +H+ H +PF C C F + L+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F ++ H +IH +K
Sbjct: 61 -------------KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C + +H+ IH +K + C IC + F + +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA + H +IH +K
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + L +HIR HT + C +C + F + L H+ HT ++PF C++C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F +H K+HL+ ++
Sbjct: 71 KFATLHTRTRHTKIHLRQKD 90
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C E C F K +L H R +H + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR--------------IHTGQKPFQCRICMRNFSQQA 48
Query: 551 NLKLHMRIHTGEKKY 565
+L H+R HTGEK +
Sbjct: 49 SLNAHIRTHTGEKPF 63
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F + L AH H G++ CD CGR + T H+ +H KIH
Sbjct: 35 FQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENISAQFAV 580
R + C V CDR F NL H+RIHTG+K + N S Q ++
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL 50
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS----- 54
YAC E C + F K L H +H G++ C C R + + SLN H++ H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 55 --DVRGKKNA 62
D+ G+K A
Sbjct: 64 ACDICGRKFA 73
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 34 DTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHL 93
++C R + K +L+ H++IH+ G+K ++C C + +H+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHT---GQK------------PFQCRICMRNFSQQASLNAHI 54
Query: 94 DIHNVEKEYFCHICKKVF 111
H EK + C IC + F
Sbjct: 55 RTHTGEKPFACDICGRKF 72
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 434 SETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTH 489
S T C Y CGKTY +HL++HL THT ++ Y C + CG +F + + L H H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 490 LAARPFICEFCSAGFKTKKHLSQHHRTH 517
RPF C+ C F HL+ H + H
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 472 CGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVH 531
CGK + K LK+HL TH +P+ C++ G+K R D L H + H
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA-----------RSDELTRHYRK-H 61
Query: 532 EKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
R FQC+ CDRAF +L LHM+ H
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEV--CGKGFVQWSSHYYHMFTHSESRNFQCTVCD 346
CG+ ++LK H+R HTGEK Y C+ CG F + H H+ R FQC CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 347 KKFATPAGLREHKRVHV 363
+ F+ L H + H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 187 VCSY--CGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRP 242
C Y CG TY L +H+R +HT + CD CG +F +L H HT RP
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 243 FVCNMCPSTFKLKKHLRQHYKVHL 266
F C C F HL H K H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRHF 90
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 134 SVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN-TQFVCSY 190
+ CGK + +++K H+R HTGEK Y C + CG FA L H HT F C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 191 CGNTYKNPKALTSHIR 206
C + L H++
Sbjct: 72 CDRAFSRSDHLALHMK 87
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 216 ICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLN 273
CD CGK + LK H+ HT ++P+ C+ +K + + L
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFAR------------SDELT 55
Query: 274 RHTNIHTG-PGYQCNICGRVMNDRTNLKVHMRNH 306
RH HTG +QC C R + +L +HM+ H
Sbjct: 56 RHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 79 CSVIVVSYSGFKSHLDIHNVEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVC 136
C S K+HL H EK Y C C F R+ L H + H R QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 72
Query: 137 GKAFADITNMKVHMRIH 153
+AF+ ++ +HM+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 385 CDTCGHGLSSKKS--LDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRNQV 440
CD G G + KS L H R HTGEK Y C CG F + L H H+ R
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 441 CSYCGKTYKNPNHLRSHLNTH 461
C C + + +HL H+ H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 345 CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHY 402
C K + + L+ H R H KPY CD CG + L HY
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGE---------------KPYHCDWDGCGWKFARSDELTRHY 58
Query: 403 RIHTGEKKYVCQQCGASFTQ 422
R HTG + + CQ+C +F++
Sbjct: 59 RKHTGHRPFQCQKCDRAFSR 78
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 164
C K + ++ +L H++ H + + C CG FA + H R HTG + + C+ C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 165 GASFALWGSLNVH 177
+F+ L +H
Sbjct: 73 DRAFSRSDHLALH 85
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLY 467
+K+++C+ CG FT+ +L H+ +H++ R C C K ++ +HLR H H+K++ +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 468 VCETCGKEFMKLELLKSHLTTHL 490
C+ CGK F + L H T H+
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHM 97
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ C CGR NL +H R HT E+ Y C++C K F + H + HS+ + F+C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 344 VCDKKFATPAGLREHKRVHV 363
C K F L HK +H+
Sbjct: 78 ECGKGFCQSRTLAVHKTLHM 97
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 98 VEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 157
+KE+ C C + F ++ NL+ H + H + R + C +C KAF +++ H IH+ EK
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 158 KYVCETCGASFALWGSLNVHSYSHTNT 184
+ C+ CG F +L VH H T
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 362 HVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFT 421
H T N++ H+R+ H +PY CD C + L DH IH+ EK + CQ+CG F
Sbjct: 26 HFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84
Query: 422 QWASLFYHKFSHSETRNQVCS 442
Q +L HK H +T + +
Sbjct: 85 QSRTLAVHKTLHMQTSSPTAA 105
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 180 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTT 239
S T +F+C +CG + L H R +HT + CD+C K FR + L++H +H+
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMEN 270
++PF C C F + L H +H++ +
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEF 499
+C +CG+ + +L H THT +R Y C+ C K F + + L+ H H +PF C+
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 500 CSAGFKTKKHLSQHHRTH 517
C GF + L+ H H
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 309 EKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKN 368
+K++IC+ CG+ F + + H TH++ R + C +C K F LR+H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH---------- 64
Query: 369 MIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIH 405
R +H KP++C CG G ++L H +H
Sbjct: 65 -----RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 458 LNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
L + TKK ++C+ CG+ F K L H TH RP+ C+ C F+ + HL H
Sbjct: 10 LPSKTKKE-FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH---- 64
Query: 518 KRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
+ +H K + F+C+ C + F L +H +H
Sbjct: 65 ----------RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRH 275
IC CG+ F L H HT +RP+ C++C F+ + HLR H +H K +
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK------ 72
Query: 276 TNIHTGPGYQCNICGRVMNDRTNLKVH 302
++C CG+ L VH
Sbjct: 73 -------PFKCQECGKGFCQSRTLAVH 92
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQV 440
K + C CG + +L H R HT E+ Y C C +F + L H++ HS+ +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 441 CSYCGKTYKNPNHLRSHLNTH 461
C CGK + L H H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 239 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTN 298
T + F+C C +H + Y + + H + Y C+IC + + +
Sbjct: 14 TKKEFICKFC------GRHFTKSYNLLIHERTHTDERP-------YTCDICHKAFRRQDH 60
Query: 299 LKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSES 337
L+ H H+ EK + C+ CGKGF Q + H H ++
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 23 LVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVI 82
L + K+ +C CGR + ++L H + H+D R Y C C
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDER---------------PYTCDICHKA 54
Query: 83 VVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCH 120
+ H IH+ EK + C C K F ++R L H
Sbjct: 55 FRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++F CK C R F YNL +H R HT E+ Y
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPY 46
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 554
FIC+FC F +L H RTH + R + C +C +AF +L+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDE--------------RPYTCDICHKAFRRQDHLRD 63
Query: 555 HMRIHTGEKKY 565
H IH+ EK +
Sbjct: 64 HRYIHSKEKPF 74
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
+ C+ CG+ F L H E H ++ CD C + ++ + L H IHS
Sbjct: 18 FICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + +TNL H+R HTG+K + C +C + F Q + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFAT H ++H+
Sbjct: 65 CDICGRKFATLHTRDRHTKIHL 86
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F + NL HI+ +H + QC +C + F+ T + H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA + + H+ H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ TN+ H+RIHTG+K + C C +F+ LN H +HT +
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHT 210
F C CG + T H R+ HT
Sbjct: 63 FACDICGRKF-----ATLHTRDRHT 82
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 30/114 (26%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S K +LD H RIHTG+K + C+ C +F+Q L
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGL---------- 50
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
NQ H+ THT ++ + C+ CG++F L H HL
Sbjct: 51 -NQ-----------------HIRTHTGEKPFACDICGRKFATLHTRDRHTKIHL 86
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 266 LKMENHLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQW 324
+ +L+ H IHTG +QC IC R + T L H+R HTGEK + C++CG+ F
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATL 75
Query: 325 SSHYYHMFTHSESRN 339
+ H H ++
Sbjct: 76 HTRDRHTKIHLRQKD 90
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 337 SRNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSS 394
R + C V CD++F+ L H R+H KP++C C S
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ---------------KPFQCRICMRNFSQ 46
Query: 395 KKSLDDHYRIHTGEKKYVCQQCGASF 420
L+ H R HTGEK + C CG F
Sbjct: 47 HTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + L +H+ H +PF C C F L+QH RTH +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F ++ H +IH +K
Sbjct: 61 -------------KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + +L +H+ HT ++ + C C + F + L H+ TH +PF C+ C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F T +H + H R+
Sbjct: 72 FATLHTRDRHTKIHLRQ 88
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C + +H+ IH +K + C IC + F ++ L HI+ H +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA + H +IH +K
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + L +HIR HT + C +C + F L +H+ HT ++PF C++C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F +H K+HL+ ++
Sbjct: 71 KFATLHTRDRHTKIHLRQKD 90
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C E C F K +L H R +H + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIR--------------IHTGQKPFQCRICMRNFSQHT 48
Query: 551 NLKLHMRIHTGEKKY 565
L H+R HTGEK +
Sbjct: 49 GLNQHIRTHTGEKPF 63
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + T H+ ++H KIH
Sbjct: 35 FQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 34 DTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHL 93
++C R + K +L+ H++IH+ G+K ++C C ++G H+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHT---GQK------------PFQCRICMRNFSQHTGLNQHI 54
Query: 94 DIHNVEKEYFCHICKKVFL----RNRNLVCHIK 122
H EK + C IC + F R+R+ H++
Sbjct: 55 RTHTGEKPFACDICGRKFATLHTRDRHTKIHLR 87
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS----- 54
YAC E C + F K L H +H G++ C C R + LNQH++ H+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 55 --DVRGKKNA-IHVNNINKKVSYKCPD 78
D+ G+K A +H + + K+ + D
Sbjct: 64 ACDICGRKFATLHTRDRHTKIHLRQKD 90
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 218 DVCGKEFRMKRQLKEHMA---VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNR 274
D C +EF + QL H+ +H + FVC+ + +L+ +K + H+ R
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRP-----FKAQYMLVVHMRR 61
Query: 275 HTNIHTGPGYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYH 330
HT ++C C + + NLK H+R+HTGEK Y+C E C K F S H
Sbjct: 62 HTGEKP---HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 331 M-FTHSESRNFQCTV--CDKKFATPAGLREH-KRVH 362
THS + + C + C K++ P+ LR+H K VH
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 95 IHNVEKEYFCHICK-----KVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMK 147
IH KE+ CH + F LV H++ H + H+C+ C K+++ + N+K
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNV---HSYSHTNTQ-FVCSYCGNT--YKNPKAL 201
H+R HTGEK Y+CE G S A + + + +H+N + +VC G T Y +P +L
Sbjct: 87 THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSL 146
Query: 202 TSHIRNSH 209
H++ H
Sbjct: 147 RKHVKTVH 154
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
Query: 416 CGASFTQWASLFYHKFS---HSETRNQVCSYCG-----KTYKNPNHLRSHLNTHTKKRLY 467
C F L +H S H E + VC + G + +K L H+ HT ++ +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 468 VC--ETCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTHKRKDTL 523
C E C K + +LE LK+HL +H +P++CE CS F ++
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK----------- 117
Query: 524 ENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRI 558
H H + + CK+ C + + D +L+ H++
Sbjct: 118 --HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 369 MIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWA 424
++ H R H KP++C + C S ++L H R HTGEK Y+C+ C +F+ +
Sbjct: 55 LVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 425 SLFYHK-FSHSETRNQVCSY--CGKTYKNPNHLRSHLNT 460
H+ +HS + VC C K Y +P+ LR H+ T
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 24/157 (15%)
Query: 7 CGKSFKTKIQLCAH--KELVHEGKQRSVCDTCG-----RTYKTKHSLNQHMKIHSDVRGK 59
C + F ++ QL H E +H ++ VC G R +K ++ L HM+ H+ +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 60 KNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFC--HICKKVFLRNRNL 117
K C K+HL H EK Y C C K F +
Sbjct: 69 KCTFE-------------GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR 115
Query: 118 VCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRI 152
H H N + + C + C K + D ++++ H++
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 470 ETCGKEFMKLELLKSHLTT---HLAARPFICEFCSAGFKTKKHLSQHHRT-HKRKDTLEN 525
+ C +EF E L H+ + H + F+C + + + +Q+ H R+ T E
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 526 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYL 566
K E C +++ + NLK H+R HTGEK Y+
Sbjct: 67 PHKCTFEG--------CRKSYSRLENLKTHLRSHTGEKPYM 99
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 435 ETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHL 490
T C Y CGKTY +HL++HL THT ++ Y C + CG +F + + L H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 491 AARPFICEFCSAGFKTKKHLSQHHRTH 517
RPF C+ C F HL+ H + H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 472 CGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVH 531
CGK + K LK+HL TH +P+ C++ G+K R D L H + H
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA-----------RSDELTRHYRK-H 60
Query: 532 EKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
R FQC+ CDRAF +L LHM+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEV--CGKGFVQWSSHYYHMFTHSESRNFQCTVCD 346
CG+ ++LK H+R HTGEK Y C+ CG F + H H+ R FQC CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 347 KKFATPAGLREHKRVHV 363
+ F+ L H + H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 187 VCSY--CGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRP 242
C Y CG TY L +H+R +HT + CD CG +F +L H HT RP
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 243 FVCNMCPSTFKLKKHLRQHYKVHL 266
F C C F HL H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRHF 89
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 134 SVCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN-TQFVCSY 190
+ CGK + +++K H+R HTGEK Y C + CG FA L H HT F C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 191 CGNTYKNPKALTSHIR 206
C + L H++
Sbjct: 71 CDRAFSRSDHLALHMK 86
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 216 ICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLN 273
CD CGK + LK H+ HT ++P+ C+ +K + + L
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFAR------------SDELT 54
Query: 274 RHTNIHTG-PGYQCNICGRVMNDRTNLKVHMRNH 306
RH HTG +QC C R + +L +HM+ H
Sbjct: 55 RHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 385 CDTCGHGLSSKKS--LDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRNQV 440
CD G G + KS L H R HTGEK Y C CG F + L H H+ R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 441 CSYCGKTYKNPNHLRSHLNTH 461
C C + + +HL H+ H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 345 CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHY 402
C K + + L+ H R H KPY CD CG + L HY
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGE---------------KPYHCDWDGCGWKFARSDELTRHY 57
Query: 403 RIHTGEKKYVCQQCGASFTQ 422
R HTG + + CQ+C +F++
Sbjct: 58 RKHTGHRPFQCQKCDRAFSR 77
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 79 CSVIVVSYSGFKSHLDIHNVEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVC 136
C S K+HL H EK Y C C F R+ L H + H R QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKC 71
Query: 137 GKAFADITNMKVHMRIH 153
+AF+ ++ +HM+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 164
C K + ++ +L H++ H + + C CG FA + H R HTG + + C+ C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 165 GASFALWGSLNVHSYSH 181
+F+ L +H H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 130 EHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVC 188
H+C VCGK F+ +K HMR HTG K Y C+TC + A SLN H H++ + F C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 189 SYCGNTYKNPKALTSHIRNSHT 210
C +N LT H+R SHT
Sbjct: 68 QICPYASRNSSQLTVHLR-SHT 88
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 280 TGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRN 339
+GP ++C +CG+ + + LK HMR HTG K Y C+ C SS H+ HS+ R
Sbjct: 6 SGP-HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTN 365
F+C +C + L H R H +
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 469 CETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMK 528
CE CGK F + + LK+H+ H +P+ C+ C L++H R
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR------------- 57
Query: 529 AVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 562
+H R F+C++C A + L +H+R HTG+
Sbjct: 58 -IHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C+VCGK F K +LK HM HT +P+ C C L +H ++H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP------ 64
Query: 277 NIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGE 309
++C IC + + L VH+R+HTG+
Sbjct: 65 -------FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 104 CHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
C +C K F R L H++ H V+ ++C C A AD +++ H+RIH+ E+ + C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 164 CGASFALWGSLNVHSYSHTN 183
C + L VH SHT
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 382 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVC 441
P++C+ CG S K L H R HTG K Y C+ C + +SL H HS+ R C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 442 SYCGKTYKNPNHLRSHLNTHT 462
C +N + L HL +HT
Sbjct: 68 QICPYASRNSSQLTVHLRSHT 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFC 500
C CGK + + L++H+ HT + Y C+TC L HL H RPF C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 501 SAGFKTKKHLSQHHRTH 517
+ L+ H R+H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 341 QCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDD 400
+C VC K F+ L+ H R H +KPY+C TC + + SL+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTG---------------VKPYKCKTCDYAAADSSSLNK 54
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
H RIH+ E+ + CQ C + + L H SH+
Sbjct: 55 HLRIHSDERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 314 CEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQ 373
CEVCGK F + HM H+ + ++C CD A + L +H R+H R
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER------- 63
Query: 374 RSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGE 408
P++C C + + L H R HTG+
Sbjct: 64 --------PFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 491 AARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
++ P CE C F RKD L+ HM+ H ++ ++CK CD A D
Sbjct: 5 SSGPHKCEVCGKCFS-------------RKDKLKTHMR-CHTGVKPYKCKTCDYAAADSS 50
Query: 551 NLKLHMRIHTGEKKY 565
+L H+RIH+ E+ +
Sbjct: 51 SLNKHLRIHSDERPF 65
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSH 92
C+ CG+ + K L HM+ H+ V+ YKC C S H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVK---------------PYKCKTCDYAAADSSSLNKH 55
Query: 93 LDIHNVEKEYFCHICKKVFLRNRNLVCHIKA 123
L IH+ E+ + C IC + L H+++
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 188 CSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM 247
C CG + L +H+R HT + C C L +H+ +H+ +RPF C +
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 248 CP----STFKLKKHLRQH 261
CP ++ +L HLR H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQC 133
+KC C K+H+ H K Y C C + +L H++ +H + R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 134 SVCGKAFADITNMKVHMRIHTGE 156
+C A + + + VH+R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVR 57
CE CGK F K +L H H G + C TC SLN+H++IHSD R
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 404 IHT-GEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNHLRSHLNT 460
+HT G + +VC +CG +F + + L H+ H+ + C++ CGK + +LR+H+
Sbjct: 27 LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Query: 461 HTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAAR 493
HT R YVC + C K+F + LKSH+ TH A+
Sbjct: 87 HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 31/138 (22%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNT 194
C K F D + M+ H+ H G + +VC CG +F L H HT + F C++ G
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG-- 69
Query: 195 YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTF 252
CGK F + L+ H+ +HT DRP+VC + C F
Sbjct: 70 -------------------------CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104
Query: 253 KLKKHLRQHYKVHLKMEN 270
+L+ H H K +N
Sbjct: 105 AQSTNLKSHILTHAKAKN 122
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC--ETC 164
C K+F N + H+ R H C+ CGKAF + + +K H +HTGEK + C E C
Sbjct: 13 CTKMFRDNSAMRKHLHT--HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 165 GASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKALTSHI 205
G F+L +L H HT + +VC + C + L SHI
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTV--CD 346
C ++ D + ++ H+ H G + ++C CGK FV+ S H H+ + FQCT C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 347 KKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHYRI 404
K+F+ LR H R+H +R PY C D C + +L H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDR---------------PYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 405 HTGEK 409
H K
Sbjct: 117 HAKAK 121
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
+ CP C+ + S + HL H + + C C K F+ + L H + VH +
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRH-QLVHTGEKP 62
Query: 131 HQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ 185
QC+ CGK F+ N++ H+RIHTG++ YVC + C FA +L H +H +
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 435 ETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAA 492
E R C + C K +++ + +R HL+TH R++VC CGK F++ LK H H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVY 550
+PF C F G + L + RTH R +H R + C C++ F
Sbjct: 61 KPFQCTFEGCG--KRFSLDFNLRTHVR----------IHTGDRPYVCPFDGCNKKFAQST 108
Query: 551 NLKLHMRIHTGEK 563
NLK H+ H K
Sbjct: 109 NLKSHILTHAKAK 121
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIH 279
C K FR +++H+ H R VC C F + L RH +H
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFV--------------ESSKLKRHQLVH 57
Query: 280 TGP-GYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTH 334
TG +QC CG+ + NL+ H+R HTG++ Y+C + C K F Q ++ H+ TH
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 335 SESRNFQ 341
++++N Q
Sbjct: 118 AKAKNNQ 124
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 317 CGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSV 376
C K F S+ H+ TH R C C K F + L+ H+ VH
Sbjct: 13 CTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGE----------- 60
Query: 377 HELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFS 432
KP++C + CG S +L H RIHTG++ YVC C F Q +L H +
Sbjct: 61 ----KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 433 HSETRN 438
H++ +N
Sbjct: 117 HAKAKN 122
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 272 LNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYY 329
+ +H + H + C CG+ + + LK H HTGEK + C E CGK F +
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 330 HMFTHSESRNFQCTV--CDKKFATPAGLREHKRVHVTNRKN 368
H+ H+ R + C C+KKFA L+ H H + N
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 1 MYACEECGKSFKTKIQLCAHKELVHEGKQRSVC--DTCGRTYKTKHSLNQHMKIHSDVRG 58
++ C ECGK+F +L H +LVH G++ C + CG+ + +L H++IH+ R
Sbjct: 34 VHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR- 91
Query: 59 KKNAIHVNNINKKVSYKCP--DCSVIVVSYSGFKSHLDIHNVEK 100
Y CP C+ + KSH+ H K
Sbjct: 92 --------------PYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 539 CKVCDRAFFDVYNLKLHMRIHTGEKKY 565
C C +AF + LK H +HTGEK +
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPF 63
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R +D +NL H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F + NL HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 270 NHLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
++L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F +
Sbjct: 20 SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 329 YHMFTH 334
H H
Sbjct: 80 RHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 30/114 (26%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S +L H RIHTG+K + C+ C +F++
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRS------------- 47
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
+HL +H+ THT ++ + C+ CG++F + + K H HL
Sbjct: 48 ---------------DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+D +N+ H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C S H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA K H +IH +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ + L H R+H KP++C C S
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQ---------------KPFQCRICMRNFSRS 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F ++H K+HL+ ++
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + + ++L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F +H + H R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F L H+ H +PF C C F HL+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F K H +IH +K
Sbjct: 61 -------------KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C E C F +L++H R +H + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIR--------------IHTGQKPFQCRICMRNFSRSD 48
Query: 551 NLKLHMRIHTGEKKY 565
+L H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 210 TIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 265
++++ IC CG + +L+ H+ HT ++PF C C F
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFT------------ 55
Query: 266 LKMENHLNRHTNIHTGP-GYQCNI--CGRVMNDRTNLKVHMRNHTGEK--KYIC--EVCG 318
+HL RH+ HTG + C+ C + N+K H K Y+C E CG
Sbjct: 56 --SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCG 113
Query: 319 KGFVQWSSHYYHMFTHSESRNFQCT--VCDKKFATPAGLREHKRVHV 363
K F + + H F+H++ ++C CDK+F+ P+ L+ H++VH
Sbjct: 114 KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 67/159 (42%), Gaps = 18/159 (11%)
Query: 122 KAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVH 177
KA+ + + CS CG A+ ++ H+ HTGEK + C E C F L H
Sbjct: 4 KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Query: 178 SYSHTNTQ-FVCSY--CGNTYKNPKALTSHIRNSHTIHQKSIC------DVCGKEFRMKR 228
S +HT + F C C + + H H I IC + CGK F+
Sbjct: 64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI---KICVYVCHFENCGKAFKKHN 120
Query: 229 QLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 265
QLK H HT P+ C C F L L++H KVH
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 24/171 (14%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCTV-- 344
CG N L+ H+ HTGEK + C E C KGF H TH+ +NF C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 345 CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYEC--DTCGHGLSSKKSLDDHY 402
CD +F T A +++H NR + I + Y C + CG L H
Sbjct: 80 CDLRFTTKANMKKH-----FNRFHNIK--------ICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 403 RIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSE---TRNQVCSYCGKTY 448
HT + Y C + C F+ + L H+ H+ ++ CS+ GKT+
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 381 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASL--FYHKFSHS 434
KP+ C + C G +S L H HTGEK + C C FT A++ +++F +
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 435 ETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHL 490
+ VC + CGK +K N L+ H +HT++ Y C E C K F LK H H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Query: 491 A 491
Sbjct: 161 G 161
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 26/148 (17%)
Query: 440 VCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPF 495
+CS+ CG Y L++HL HT ++ + C E C K F L L H TH + F
Sbjct: 14 ICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNF 73
Query: 496 IC--EFCSAGFKTKKHLSQH-HRTHKRKDTL-----ENHMKAV------------HEKIR 535
C + C F TK ++ +H +R H K + EN KA H +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 536 DFQC--KVCDRAFFDVYNLKLHMRIHTG 561
++C + CD+ F LK H ++H G
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 467 YVCE--TCGKEFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHHRTH 517
Y+C CG + K L++HL H +PF C E C GF + HL++H TH
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 6 ECGKSFKTKIQLCAHKELVHEGKQRSVC--DTCGRTYKTKHSLNQHMKIHSDVRGKKNAI 63
+CG ++ +L AH H G++ C + C + + + H L +H H+ G+KN
Sbjct: 19 DCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT---GEKNFT 74
Query: 64 HVNNINKKVSYKCPDCSVIVVSYSGFKSHLD-IHNVEK-EYFCHI--CKKVFLRNRNLVC 119
++ C + + + K H + HN++ Y CH C K F ++ L
Sbjct: 75 CDSD----------GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 120 HIKAVHENVREHQCS--VCGKAFADITNMKVHMRIHTG---EKKYVCETCGASFALW 171
H + H ++C C K F+ + +K H ++H G +K C G ++ L+
Sbjct: 125 H-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT---QFVCS 189
C +CGK F D+ ++ H H+GEK Y C CG F ++ H SH + ++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 190 YCGNTYKNPKALTSHIRNSHT 210
CG + P L HI+ H+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHS 90
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 434 SETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLA-- 491
S + C CGK +++ HL H +H+ ++ Y C CG F + + + H+ +H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 492 ARPFICEFCSAGFKTKKHLSQH 513
+P+IC+ C GF HL+ H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGH 84
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 283 GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSES--RNF 340
G C ICG++ D +L H +H+GEK Y C VCG F + YH+ +H S + +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 341 QCTVCDKKFATPAGLREH-KRVH 362
C C K F+ P L H K+VH
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTH--TK 463
+G C+ CG F L HK SHS + C CG +K + + H+ +H +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 464 KRLYVCETCGKEFMKLELLKSHL 486
+ Y+C++CGK F + + L H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 385 CDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH--SETRNQVCS 442
C+ CG L+ H H+GEK Y C CG F + + YH SH S + +C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 443 YCGKTYKNPNHLRSHL 458
CGK + P+HL H+
Sbjct: 70 SCGKGFSRPDHLNGHI 85
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 104 CHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE--KKYVC 161
C IC K+F +L H K H + + C VCG F M H+R H G K Y+C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 162 ETCGASFALWGSLNVH 177
++CG F+ LN H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 180 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH-- 237
S ++ C CG +++ L H + SH+ + C VCG F+ K ++ H+ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 238 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGP 282
+ +P++C C F HL H K +H+GP
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIK-------------QVHSGP 92
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 468 VCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH---------- 517
CE CGK F + L H +H +P+ C C FK K +S H R+H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 518 -------KRKDTLENHMKAVHE 532
R D L H+K VH
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS 90
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C++CGK FR L H H+ ++P+ C +C FK K + H + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH----------- 58
Query: 277 NIHTGPGYQCNICGRVMNDRTNLKVHMRN-HTGE 309
+ G Y C CG+ + +L H++ H+G
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRN-SHTI 211
+G CE CG F LN H SH+ + + C CG +K ++ H+R+ ++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 212 HQKSICDVCGKEFRMKRQLKEHM 234
+ IC CGK F L H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 17/97 (17%)
Query: 335 SESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSS 394
S S C +C K F L HK H KPY C CG
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE---------------KPYSCPVCGLRFKR 47
Query: 395 KKSLDDHYRIHTGE--KKYVCQQCGASFTQWASLFYH 429
K + H R H G K Y+CQ CG F++ L H
Sbjct: 48 KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 44/125 (35%), Gaps = 42/125 (33%)
Query: 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNA 62
ACE CGK F+ L HK L H G++ C CG +K K ++ H++ H
Sbjct: 9 ACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG------- 60
Query: 63 IHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIK 122
+V K Y C C K F R +L HIK
Sbjct: 61 ----------------------------------SVGKPYICQSCGKGFSRPDHLNGHIK 86
Query: 123 AVHEN 127
VH
Sbjct: 87 QVHSG 91
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 539 CKVCDRAFFDVYNLKLHMRIHTGEKKY 565
C++C + F DVY+L H H+GEK Y
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPY 36
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGK--QRSVCDTCGRTYKTKHSLNQHMK-IHS 54
Y+C CG FK K ++ H H+G + +C +CG+ + LN H+K +HS
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F R+ +L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 272 LNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYH 330
L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F + H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 331 MFTH 334
H
Sbjct: 82 TKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + +L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 408 EKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
E+ Y C + C F++ A L H H+ + C C + + +HL +H+ THT ++
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 466 LYVCETCGKEFMKLELLKSHLTTHL 490
+ C+ CG++F + + K H HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ A L H R+H KP++C C S
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQ---------------KPFQCRICMRNFSRS 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
+ C CG+ + + + H H +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C + H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA K H +IH +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F ++H K+HL+ ++
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + L H+ H +PF C C F HL+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F K H +IH +K
Sbjct: 61 -------------KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ ++ H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F +H + H R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C E C F L++H R +H + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIR--------------IHTGQKPFQCRICMRNFSRSD 48
Query: 551 NLKLHMRIHTGEKKY 565
+L H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 270 NHLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
+ L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F +
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 329 YHMFTH 334
H H
Sbjct: 80 RHTKIH 85
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 30/114 (26%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S L H RIHTG+K + C+ C +F++
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS------------- 47
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
+HL +H+ THT ++ + C+ CG++F + + K H HL
Sbjct: 48 ---------------DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + + L H+ H +PF C C F HL+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F K H +IH +K
Sbjct: 61 -------------KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F ++H K+HL+ ++
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F +H + H R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ L H R+H KP++C C S
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQ---------------KPFQCRICMRNFSRS 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA K H +IH +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
R R D L H++ +H + FQC++C R F +L H+R HTGEK +
Sbjct: 14 RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
R + C V CDR F L H+RIHTG+K +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPF 35
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 272 LNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYH 330
L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F + H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 331 MFTH 334
H
Sbjct: 82 TKIH 85
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 30/114 (26%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S L H RIHTG+K + C+ C +F++
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRS------------- 47
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
+HL +H+ THT ++ + C+ CG++F + + K H HL
Sbjct: 48 ---------------DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ A L H R+H KP++C C S
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQ---------------KPFQCRICMRNFSRS 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F ++H K+HL+ ++
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C + H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA K H +IH +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + L H+ H +PF C C F HL+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F K H +IH +K
Sbjct: 61 -------------KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F +H + H R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C E C F L++H R +H + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIR--------------IHTGQKPFQCRICMRNFSRSD 48
Query: 551 NLKLHMRIHTGEKKY 565
+L H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 462 TKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTH 517
++KR ++C C K + KL L+ H H +P+ C+F C F
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFS------------ 49
Query: 518 KRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
R D L+ H + H ++ FQCK C R F +LK H R HTGEK +
Sbjct: 50 -RSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 270 NHLNRHTNIHTGP-GYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSS 326
+HL H+ HTG YQC+ C R + LK H R HTG K + C+ C + F +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 327 HYYHMFTHSESRNFQC--TVCDKKFATPAGLREHKRVH 362
H TH+ + F C C KKFA L H +H
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 398 LDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLR 455
L H R HTGEK Y C + C F++ L H+ H+ + C C + + +HL+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 456 SHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTH 489
+H THT ++ + C +C K+F + + L H H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 416 CGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVCETCG 473
C + + + L H H+ + C + C + + + L+ H HT + + C+TC
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 474 KEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTH 517
++F + + LK+H TH +PF C + C F L +HH H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 43/135 (31%)
Query: 297 TNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLR 356
++L++H R HTGEK Y C+ C+++F+ L+
Sbjct: 22 SHLQMHSRKHTGEKPYQCDF--------------------------KDCERRFSRSDQLK 55
Query: 357 EHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQ-- 414
H+R H +KP++C TC S L H R HTGEK + C+
Sbjct: 56 RHQRRHTG---------------VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWP 100
Query: 415 QCGASFTQWASLFYH 429
C F + L H
Sbjct: 101 SCQKKFARSDELVRH 115
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 32/134 (23%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFALWGSLNVHSYSHTNTQFVCSYCGN 193
C K + ++++++H R HTGEK Y C+ C F+ L H HT +
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF------ 67
Query: 194 TYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPST 251
C C ++F LK H HT ++PF C C
Sbjct: 68 ----------------------QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKK 105
Query: 252 FKLKKHLRQHYKVH 265
F L +H+ +H
Sbjct: 106 FARSDELVRHHNMH 119
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 164
C K + + +L H + H + +QC C + F+ +K H R HTG K + C+TC
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72
Query: 165 GASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKALTSH 204
F+ L H+ +HT + F C + C + L H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 186 FVCSY--CGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDR 241
F+C+Y C Y L H R HT + CD C + F QLK H HT +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 242 PFVCNMCPSTFKLKKHLRQHYKVH 265
PF C C F HL+ H + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 99 EKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 156
E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 157 KKYVCETCGASFALWGSLNVHSYSH 181
K + C+ CG FA H+ H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 270 NHLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
+ L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F +
Sbjct: 19 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 78
Query: 329 YHMFTH 334
H H
Sbjct: 79 RHTKIH 84
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 30/112 (26%)
Query: 381 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+PY C ++C S L H RIHTG+K + C+ C +F++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS--------------- 46
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
+HL +H+ THT ++ + C+ CG++F + + K H HL
Sbjct: 47 -------------DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 64 CDICGRKFARSDERKRHTKIHL 85
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 504 FKTKKHLSQHHRTHKRK 520
F +H + H R+
Sbjct: 71 FARSDERKRHTKIHLRQ 87
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + + L H+ H +PF C C F HL+ H RTH +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 59
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
+ F C +C R F K H +IH
Sbjct: 60 -------------KPFACDICGRKFARSDERKRHTKIH 84
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ L H R+H KP++C C S
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQ---------------KPFQCRICMRNFSRS 46
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 47 DHLTTHIRTHTGEKPFACDICGRKFAR 73
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 251 TFKLKKHLRQHYKVHLKM 268
F ++H K+HL+
Sbjct: 70 KFARSDERKRHTKIHLRQ 87
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 62 FACDICGRKF 71
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 61
Query: 131 HQCSVCGKAFADITNMKVHMRIH 153
C +CG+ FA K H +IH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
R R D L H++ +H + FQC++C R F +L H+R HTGEK +
Sbjct: 13 RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 34 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
R + C V CDR F L H+RIHTG+K +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPF 34
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 99 EKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 156
E+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 157 KKYVCETCGASFALWGSLNVHSYSH 181
K + C+ CG FA H+ H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 270 NHLNRHTNIHTG-PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
+ L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F +
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 329 YHMFTH 334
H H
Sbjct: 80 RHTKIH 85
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 30/112 (26%)
Query: 381 KPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+PY C ++C S L H RIHTG+K + C+ C +F++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS--------------- 47
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
+HL +H+ THT ++ + C+ CG++F + + K H HL
Sbjct: 48 -------------DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + + L H+ H +PF C C F HL+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
+ F C +C R F K H +IH
Sbjct: 61 -------------KPFACDICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ L H R+H KP++C C S
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQ---------------KPFQCRICMRNFSRS 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLK 267
F ++H K+HL+
Sbjct: 71 KFARSDERKRHTKIHLR 87
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKR 519
F +H + H R
Sbjct: 72 FARSDERKRHTKIHLR 87
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ + H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIH 153
C +CG+ FA K H +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
R R D L H++ +H + FQC++C R F +L H+R HTGEK +
Sbjct: 14 RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
R + C V CDR F L H+RIHTG+K +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPF 35
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 272 LNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYH 330
L RH IHTG +QC IC R + +L H+R HTGEK + C++CG+ F + H
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 331 MFTH 334
H
Sbjct: 82 TKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F ++ +L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSH 181
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 408 EKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
E+ Y C + C F+Q SL H H+ + C C + + +HL +H+ THT ++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 466 LYVCETCGKEFMKLELLKSHLTTHL 490
+ C+ CG++F + + K H HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + +L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVHV 363
C +C +KFA + H ++H+
Sbjct: 65 CDICGRKFARSDERKRHTKIHL 86
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 379 LLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ +PY C ++C S SL H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
+ C CG+ + + + H H +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ L H R+H KP++C C S
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQ---------------KPFQCRICMRNFSRS 47
Query: 396 KSLDDHYRIHTGEKKYVCQQCGASFTQ 422
L H R HTGEK + C CG F +
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + +LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVHLKMEN 270
F ++H K+HL+ ++
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 73 SYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE 130
Y CP C H+ IH +K + C IC + F R+ +L HI+ H +
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
C +CG+ FA K H +IH +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 464 KRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKD 521
+R Y C E+C + F + L H+ H +PF C C F HL+ H RTH +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE- 60
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F K H +IH +K
Sbjct: 61 -------------KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTHKRK 520
F +H + H R+
Sbjct: 72 FARSDERKRHTKIHLRQ 88
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ- 185
R + C V C + F+ ++ H+RIHTG+K + C C +F+ L H +HT +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 186 FVCSYCGNTY 195
F C CG +
Sbjct: 63 FACDICGRKF 72
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C E C F L++H R +H + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR--------------IHTGQKPFQCRICMRNFSRSD 48
Query: 551 NLKLHMRIHTGEKKY 565
+L H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 437 RNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAA 492
R C Y C K Y +HL++HL THT ++ Y C E C F + + L H H A
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHK 518
+PF C C+ F HL+ H + H+
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 463 KKRLYVCE--TCGKEFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHHRTHK 518
K+R++ C+ C K + K LK+HL TH +P+ C E C F L++H+R H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH- 70
Query: 519 RKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
+ FQC VC+R+F +L LHM+ H
Sbjct: 71 -------------TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCTVCD 346
C +V ++LK H+R HTGEK Y C E C F + H H+ ++ FQC VC+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 347 KKFATPAGLREHKRVH 362
+ F+ L H + H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 77 PDCSVIVVSYSGFKSHLDIHNVEKEYFC--HICKKVFLRNRNLVCHIKAVHENVREHQCS 134
P C+ + S K+HL H EK Y C C F R+ L H + H + QC
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 135 VCGKAFADITNMKVHMRIH 153
VC ++F+ ++ +HM+ H
Sbjct: 80 VCNRSFSRSDHLALHMKRH 98
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 217 CDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNR 274
CD C K + LK H+ HT ++P+ C ++ + + L R
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR------------SDELTR 65
Query: 275 HTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNH 306
H HTG +QC +C R + +L +HM+ H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETC 164
C KV+ ++ +L H++ H + ++C+ C FA + H R HTG K + C C
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 165 GASFALWGSLNVHSYSHTN 183
SF+ L +H H N
Sbjct: 82 NRSFSRSDHLALHMKRHQN 100
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 188 CSYCGNT--YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKR--QLKEHMAVHTTDRPF 243
C Y G T Y L +H+R +HT + C G ++R R +L H HT +PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Query: 244 VCNMCPSTFKLKKHLRQHYKVH 265
C +C +F HL H K H
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRH 98
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 398 LDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLR 455
L H R HTGEK Y C + C F + L H H+ + C C +++ +HL
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 456 SHLNTH 461
H+ H
Sbjct: 93 LHMKRH 98
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 376 VHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
H KPY+C + C + L HYR HTG K + C C SF++ L H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
+G+K Y CQ CG SFT + H H R C CGK +K +HL H+ HT +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 466 LYVCETCGKEFMKLELLKSHLTT 488
Y C C K FM + H+T+
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTS 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIH 279
CGK F K Q HM++H RP+ C +C FK+K HL H K+H ++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP--------- 65
Query: 280 TGPGYQCNICGRVMNDRTNLKVHM 303
Y+CNIC + R + H+
Sbjct: 66 ----YECNICAKRFMWRDSFHRHV 85
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 465 RLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLE 524
+LY C+ CGK F H++ HL RP+ C C FK K HL
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLV------------- 54
Query: 525 NHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENIS 575
HMK +H I+ ++C +C + F ++ H + + K Y + + +N +
Sbjct: 55 GHMK-IHTGIKPYECNICAKRF--MWRDSFHRHVTSCTKSYEAAKAEQNTT 102
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 261
C VCGK+F+MK L HM +HT +P+ CN+C F + +H
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+K Y C C K F H+ ++H +R + C VCGK F ++ HM+IHTG K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 159 YVCETCGASFALW 171
Y C C F +W
Sbjct: 66 YECNICAKRF-MW 77
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 307 TGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNR 366
+G+K Y C+ CGK F S HM H R + C VC KKF ++ H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK----MKHH-------- 52
Query: 367 KNMIDHQRSVHELLKPYECDTC 388
++ H + +H +KPYEC+ C
Sbjct: 53 --LVGHMK-IHTGIKPYECNIC 71
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 367 KNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASL 426
K+ D S+H L+PY C CG K L H +IHTG K Y C C F W
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF-MWRDS 80
Query: 427 FY 428
F+
Sbjct: 81 FH 82
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
CGK++ + + H++ H R Y C CGK+F L H+ H +P+ C C+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 504 FKTKKHLSQH 513
F + +H
Sbjct: 75 FMWRDSFHRH 84
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 273 NRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYH 330
+RH ++H G P Y C +CG+ + +L HM+ HTG K Y C +C K F+ S + H
Sbjct: 26 DRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Query: 331 M 331
+
Sbjct: 85 V 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 1 MYACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVR 57
+Y C+ CGKSF K Q H + H G + C CG+ +K KH L HMKIH+ ++
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
Y C CG+ ++ HM H G + Y C VCGK F HM H+ + ++C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 344 VCDKKF 349
+C K+F
Sbjct: 70 ICAKRF 75
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 92 HLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAF 140
H+ +H + Y C +C K F +LV H+K +H ++ ++C++C K F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRF 75
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIH 212
+G+K Y C+ CG SF + H H + + C CG +K L H++ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGI 63
Query: 213 QKSICDVCGKEFRMKRQLKEHM 234
+ C++C K F + H+
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV 85
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHM 50
Y C CGK FK K L H + +H G + C+ C + + + S ++H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT-QFVCSYC 191
C VC +++ +T+++ H IH+ EKKY C C F L H HT ++ C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 192 GNTYKNPKALTSHIRNSHT 210
G ++ N + ++SHI++ H+
Sbjct: 85 GKSFINYQFMSSHIKSVHS 103
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 399 DDHYR-IHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSH 457
DDHY I G Y+C C S+ SL H HS + C YC K + + H
Sbjct: 10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH 69
Query: 458 LNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
HT +R Y C CGK F+ + + SH+ + + P
Sbjct: 70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 68 INKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHEN 127
++ +V Y C C V + + H +IH+ EK+Y C C+KVF H + H
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTG 75
Query: 128 VREHQCSVCGKAFADITNMKVHMR 151
R +QC CGK+F + M H++
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIK 99
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCS 442
Y C C SL H+ IH+ EKKY C+ C F H+ H+ R C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 443 YCGKTYKNPNHLRSHLNT 460
CGK++ N + SH+ +
Sbjct: 83 ACGKSFINYQFMSSHIKS 100
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
Y C +C R T+L+ H H+ EKKY C C K F H H+ R +QC
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 344 VCDKKFATPAGLREH-KRVHVTN 365
C K F + H K VH +
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQD 105
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 12 KTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKK 71
+ K++ H EL+ +G+ +C C R+Y SL +H IHS KK
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKK 50
Query: 72 VSYKCPDCSVIVVSYSGFKSHLDIHNV-EKEYFCHICKKVFLRNRNLVCHIKAVHEN 127
Y C C V + +++ +IH+ E+ Y C C K F+ + + HIK+VH
Sbjct: 51 --YPCRYCEK-VFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEF 499
+C C ++Y LR H N H+ ++ Y C C K F E H H R + C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 500 CSAGFKTKKHLSQH 513
C F + +S H
Sbjct: 84 CGKSFINYQFMSSH 97
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 225 RMKRQLKEHMAVHTTDRPF-VCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPG 283
RMK + +H + R + +C +C ++ LR+H+ +H +
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK------------- 50
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
Y C C +V H +HTGE++Y C CGK F+ Y M +H +S + Q
Sbjct: 51 YPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN----YQFMSSHIKSVHSQDP 106
Query: 344 VCDKKF 349
D K
Sbjct: 107 SGDSKL 112
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENH 526
Y+C C + ++ L L+ H H + + C +C F ++ ++H E H
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH----------EIH 72
Query: 527 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR 557
H R +QC C ++F + + H++
Sbjct: 73 ----HTGERRYQCLACGKSFINYQFMSSHIK 99
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 43/116 (37%)
Query: 308 GEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRK 367
G YIC VC + +V +S H HS + + C C+K F
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP----------------- 61
Query: 368 NMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQW 423
+ R+ HE+ HTGE++Y C CG SF +
Sbjct: 62 --LAEYRTKHEIH------------------------HTGERRYQCLACGKSFINY 91
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
++C C +Y +L H N H+ +K C C K F + +H HT +R + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 246 NMCPSTF 252
C +F
Sbjct: 82 LACGKSF 88
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
KPY C CG S L H R+HTGEK Y C +CG +F+Q + L H+ H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 183
+ + C CGKAF+ + + H R+HTGEK Y C CG +F+ L H HT+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 154
EK Y C C K F R+ LV H + VH + ++C CGKAF+ + + H RIHT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 309 EKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTN 365
EK Y C CGK F + S H H+ + ++C C K F+ +GL H+R+H +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
Y C CG+ + + L H R HTGEK Y C CGK F Q S H H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 338 RNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKS 397
+ + C C K F+ + L +H+RVH KPY+C CG S
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE---------------KPYKCLECGKAFSQNSG 57
Query: 398 LDDHYRIHT 406
L +H RIHT
Sbjct: 58 LINHQRIHT 66
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
++ Y C CGK F + +L H H +P+ C C F L H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSD 55
Y C ECGK+F L H+ VH G++ C CG+ + L H +IH+
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C CGK F L +H VHT ++P+ C C F L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHT 462
EK Y C +CG +F++ + L H+ H+ + C CGK + + L +H HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAA 492
C CGK + + L H HT ++ Y C CGK F + L +H H +
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
+P+ C C F L QH R VH + ++C C +AF L
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR--------------VHTGEKPYKCLECGKAFSQNSGL 58
Query: 553 KLHMRIHT 560
H RIHT
Sbjct: 59 INHQRIHT 66
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCH 120
Y C +C S H +H EK Y C C K F +N L+ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ + C C +AF L H R+HTGEK Y
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPY 43
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNL 299
++P+ C C F L QH +VH + Y+C CG+ + + L
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKP-------------YKCLECGKAFSQNSGL 58
Query: 300 KVHMRNHT 307
H R HT
Sbjct: 59 INHQRIHT 66
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTD 240
+ C CG + L H R HT + C CGK F L H +HT+
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCTV-- 344
CG N L+ H+ HTGEK + C E C KGF H TH+ +NF C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 345 CDKKFATPAGLREH 358
CD +F T A +++H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 467 YVCE--TCGKEFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHHRTH 517
Y+C CG + K L++HL+ H +PF C E C GF + HL++H TH
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCG 192
CG A+ ++ H+ HTGEK + C E C F L HS +HT + F C G
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 388 CGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRNQVCSY-- 443
CG + L H HTGEK + C++ C FT L H +H+ +N C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 444 CGKTYKNPNHLRSHLN 459
C + +++ H N
Sbjct: 71 CDLRFTTKANMKKHFN 86
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 185 QFVCSY--CGNTYKNPKALTSHIRNSHTIHQKSIC--DVCGKEFRMKRQLKEHMAVHTTD 240
+++CS+ CG Y L +H+ + HT + C + C K F L H HT +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHL-SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 241 RPFVCNM--CPSTFKLKKHLRQHY 262
+ F C+ C F K ++++H+
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 100 KEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQC--SVCGKAFADITNMKVHMRIHTG 155
K Y C C + +N L H+ + H + C C K F + ++ H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHL-SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 156 EKKYVCETCGASFALWGSLNV 176
EK + C++ G N+
Sbjct: 61 EKNFTCDSDGCDLRFTTKANM 81
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 375 SVHELLKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASL 426
S H KP+ C + C G +S L H HTGEK + C C FT A++
Sbjct: 26 SKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 81
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 409 KKYVCQ--QCGASFTQWASLFYHKFSHSETRNQVC--SYCGKTYKNPNHLRSHLNTHTKK 464
K+Y+C CGA++ + L H H+ + C C K + + +HL H THT +
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 465 RLYVCETCG 473
+ + C++ G
Sbjct: 62 KNFTCDSDG 70
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 213 QKSICDV--CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVHLKM 268
++ IC CG + +L+ H++ HT ++PF C C F +H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFT---------SLH--- 49
Query: 269 ENHLNRHTNIHTGP-GYQCNI--CGRVMNDRTNLKVHM 303
HL RH+ HTG + C+ C + N+K H
Sbjct: 50 --HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 157
+K Y C C+ F NL H K VH + ++C++CG F N+K H RIH+GEK
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
KPY+CD C K +L H +HTGEK Y C CGA F + A+L H HS
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNL 299
D+P+ C+ C ++F+ K +L H VH + Y+CNICG N NL
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP-------------YRCNICGAQFNRPANL 61
Query: 300 KVHMRNHTGEK 310
K H R H+GEK
Sbjct: 62 KTHTRIHSGEK 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
CD C FR K L H VHT ++P+ CN+C + F +L+ H ++H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
+P+ C+ C A F+ K +L+ H K VH + ++C +C F NL
Sbjct: 16 KPYKCDRCQASFRYKGNLASH--------------KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 553 KLHMRIHTGEK 563
K H RIH+GEK
Sbjct: 62 KTHTRIHSGEK 72
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 183
+ ++C C +F N+ H +HTGEK Y C CGA F +L H+ H+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
+K Y C +C ASF +L HK H+ + C+ CG + P +L++H H+ ++
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
Y C+ C SF+ K L +HK VH G++ C+ CG + +L H +IHS
Sbjct: 18 YKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 309 EKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+K Y C+ C F + H H+ + ++C +C +F PA L+ H R+H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
C C +++ +L SH HT ++ Y C CG +F + LK+H H +P
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 337 SRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKK 396
+ ++C C F L HK VH KPY C+ CG +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGE---------------KPYRCNICGAQFNRPA 59
Query: 397 SLDDHYRIHTGEK 409
+L H RIH+GEK
Sbjct: 60 NLKTHTRIHSGEK 72
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 465 RLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ Y C+ C F L SH T H +P+ C C A F +L H R H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
Y+C+ C + NL H HTGEK Y C +CG F + ++ H HS
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 183 NTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 242
+ + C C +++ L SH + HT + C++CG +F LK H +H+ ++P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 58/159 (36%), Gaps = 49/159 (30%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVC--------GKEFRMKRQLKEHMAVHTTDRP 242
C T+ L +H+ H + VC GK F+ K +L H+ VHT ++P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 243 FVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVH 302
F C PG CG++ NLK+H
Sbjct: 91 FPCPF----------------------------------PG-----CGKIFARSENLKIH 111
Query: 303 MRNHTGEKKYICEV--CGKGFVQWSSHYYHMFTHSESRN 339
R HTGEK + CE C + F S HM H+ ++
Sbjct: 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 264 VHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEV--CGKGF 321
H+ ME+ N H +C G+ + L H+R HTGEK + C CGK F
Sbjct: 43 THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF 102
Query: 322 VQWSSHYYHMFTHSESRNFQCTV--CDKKFATPAGLREHKRVHVTNR 366
+ + H TH+ + F+C CD++FA + ++H VH +++
Sbjct: 103 ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 38/146 (26%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSVC--------GKAFADITNMKVHMRIHTGEKK 158
C + F LV H+ H E VC GK+F + H+R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 159 YVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKS 215
+ C CG FA +L +H +HT + F C + G
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG----------------------- 127
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDR 241
C + F K+HM VHT+D+
Sbjct: 128 ----CDRRFANSSDRKKHMHVHTSDK 149
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 42/131 (32%)
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCE--TCGKEFMKLELLKSHLTTHLAARPFI 496
+ C GK++K L +H+ HT ++ + C CGK F + E LK H TH +PF
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 497 CEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM 556
CEF + CDR F + + K HM
Sbjct: 123 CEF----------------------------------------EGCDRRFANSSDRKKHM 142
Query: 557 RIHTGEKKYLS 567
+HT +K S
Sbjct: 143 HVHTSDKSGPS 153
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 384 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVC 441
EC G +K L +H R+HTGEK + C CG F + +L HK +H+ + C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 442 SY--CGKTYKNPNHLRSHLNTHTKKR 465
+ C + + N + + H++ HT +
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 52/161 (32%)
Query: 7 CGKSFKTKIQLCAHKELVHEGKQR--------SVCDTCGRTYKTKHSLNQHMKIHSDVRG 58
C ++F T +L H + H G C G+++K K+ L H+++H+ +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK- 89
Query: 59 KKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLV 118
+ CP + G C K+F R+ NL
Sbjct: 90 --------------PFPCP--------FPG------------------CGKIFARSENLK 109
Query: 119 CHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEK 157
H K H + +C C + FA+ ++ K HM +HT +K
Sbjct: 110 IH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRT 516
Y+CE CG K +LK H+ TH RP+ C +C+ FKTK +L++H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 214 KSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 263
K IC+ CG + LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 311 KYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREH 358
KYICE CG + S H+ TH++ R + CT C+ F T L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 410 KYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNT--HTKK 464
KY+C++CG + + L H +H++ R C+YC ++K +L H+ + H+KK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 158 KYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRN 207
KY+CE CG L H +HT+ + + C+YC ++K LT H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAAR 493
+C CG K P+ L+ H+ THT R Y C C F K +LT H+ ++
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK----TKGNLTKHMKSK 52
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHM 234
+++C CG K P L HIR +HT + C C F+ K L +HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ 185
C CG + +K H+R HT + Y C C SF G+L H S +++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
Y C+ CG L H R HT + Y C C SF +L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSES 337
Y+C+ CG+ + ++L H R HTGEK Y C+ CGK F+Q S H H+ S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
Y+CD CG S L H R HTGEK Y C +CG +F Q + L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT 184
R ++C CGK+F+ +++ H R HTGEK Y C+ CG +F L H HT +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 463 KKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
++R Y C+ CGK F L H TH +P+ C+ C F + HL HHR H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 430 KFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
++ E R C CGK++ + + L H THT ++ Y C+ CGK F++ L H H
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 490 LAARP 494
+ P
Sbjct: 70 TGSGP 74
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
CD CGK F L +H HT ++P+ C+ C F + HL H++VH
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 332 FTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHG 391
+ E R ++C C K F+ + L +H+R H KPY+CD CG
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE---------------KPYKCDECGKA 55
Query: 392 LSSKKSLDDHYRIHTG 407
+ L H+R+HTG
Sbjct: 56 FIQRSHLIGHHRVHTG 71
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 409 KKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHT 462
++Y C +CG SF+ + L H+ +H+ + C CGK + +HL H HT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
Y C+ECGKSF L H+ H G++ CD CG+ + + L H ++H+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 242
++ C CG ++ + L+ H R +HT + CD CGK F + L H VHT P
Sbjct: 18 RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 100 KEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+ Y C C K F + +L H + H + ++C CGKAF +++ H R+HTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 310 KKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTN 365
++Y C+ CGK F S H TH+ + ++C C K F + L H RVH +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCH 120
YKC +C S H H EK Y C C K F++ +L+ H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
R + C+ C F LS+H RTH T E + ++C C +AF +L
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH----TGE----------KPYKCDECGKAFIQRSHL 62
Query: 553 KLHMRIHTG 561
H R+HTG
Sbjct: 63 IGHHRVHTG 71
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
R ++C C ++F +L H R HTGEK Y
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPY 47
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYH 330
+QC IC R + +L H+R HTGEK + C++CG+ F + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 169
QC +C + F+ ++ H+R HTGEK + C+ CG FA
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQ 422
+KP++C C S L H R HTGEK + C CG F +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSH 485
C C + + +HL +H+ THT ++ + C+ CG++F + + K H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 237
F C C + LT+HIR +HT + CD+CG++F + K H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 310 KKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
K + C +C + F + H+ TH+ + F C +C +KFA + H+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENH 526
+ C C + F + + L +H+ TH +PF C+ C F +H LE+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 527 MKAVHEK 533
++ + K
Sbjct: 64 VEELLSK 70
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++ FQC++C R F +L H+R HTGEK +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 32
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C +C + F L H+ HT ++PF C++C F ++H +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 100 KEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIH 153
K + C IC + F R+ +L HI+ H + C +CG+ FA K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAF 546
+PF C C F HL+ H RTH + + F C +C R F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACDICGRKF 41
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 285 QCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+C+ CG+ L +H+R HTGEK Y CE C Q +S YH+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 177
+CS CGK F + +H+R HTGEK Y CE C + A SL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 384 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
EC CG S L+ H R HTGEK Y C+ C + Q SL YH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 436 TRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+ ++ CSYCGK +++ +L HL THT ++ Y CE C + L+ HL H
Sbjct: 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 267
C CGK FR L H+ HT ++P+ C C K LR H + H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 469 CETCGKEFMKLELLKSHLTTHLAARPFICEFC--SAGFKT--KKHLSQHHR 515
C CGK F L HL TH +P+ CEFC +A KT + HL +HH+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 538 QCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+C C + F Y L +H+R HTGEK Y
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPY 33
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 188 CSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 237
CSYCG +++ L H+R +HT + C+ C K L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSIC---DVCGKEFRMKRQLKEHMAVHTTDRPFVCNM 247
CG + N + L H + H IHQKS CGK F K+ LKEHM +H+ R ++C
Sbjct: 15 CGRIFSNRQYLNHHKKYQH-IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETC 164
C ++F + L H K H + + C CGK+F ++K HM++H+ + Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 165 GAS 167
G S
Sbjct: 75 GPS 77
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 7 CGKSFKTKIQLCAHKELVHEGKQRSVCD--TCGRTYKTKHSLNQHMKIHSDVR 57
CG+ F + L HK+ H ++ C CG+++ K L +HMK+HSD R
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 434 SETRNQVCSY--CGKTYKNPNHLRSHLN-THTKKRLYVCE--TCGKEFMKLELLKSHLTT 488
S + C + CG+ + N +L H H ++ + C CGK F + LK H+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 489 HLAARPFICEF 499
H R +ICEF
Sbjct: 63 HSDTRDYICEF 73
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 416 CGASFTQWASLFYHK-FSHSETRNQVCS--YCGKTYKNPNHLRSHLNTHTKKRLYVCETC 472
CG F+ L +HK + H ++ C CGK++ HL+ H+ H+ R Y+CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 473 GK 474
G
Sbjct: 75 GP 76
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 363 VTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGAS 419
+NR+ + H++ H K + C CG + KK L +H ++H+ + Y+C+ G S
Sbjct: 19 FSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEVCGK 319
CG+ N + +LK HM+ H+ + YICE G
Sbjct: 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFSGP 76
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 217 CDV--CGKEFRMKRQLKEHMAV-HTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMENH 271
CD CG+ F ++ L H H + F C C +F KKHL++H K+H ++
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 272 LNRHTNIHTG 281
+ + +G
Sbjct: 70 ICEFSGPSSG 79
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 463 KKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
K R Y C E+C + F + + L H+ H +PF C C F HL+ H RTH
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 121 IKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHS 178
+ V +R + C V C + F+ + H+RIHTG+K + C C +F+ L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 179 YSHT 182
+HT
Sbjct: 70 RTHT 73
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 380 LKPYEC--DTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
++PY C ++C S L H RIHTG+K + C+ C +F++ L H +H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 218 DVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ C + F +L H+ +HT +PF C +C F HL H + H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 523 LENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
+ N + V K+R + C V CDR F L H+RIHTG+K +
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPF 50
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 283 GYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
Y C + C R + L H+R HTG+K + C +C + F + H+ TH+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 100 KEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 154
+ Y C + C + F R+ L HI+ +H + QC +C + F+ ++ H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 560
R R D L H++ +H + FQC++C R F +L H+R HT
Sbjct: 29 RRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 270 NHLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHT 307
+ L RH IHTG +QC IC R + +L H+R HT
Sbjct: 35 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 17/71 (23%)
Query: 338 RNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSK 395
R + C V CD++F+ L H R+H KP++C C S
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ---------------KPFQCRICMRNFSRS 62
Query: 396 KSLDDHYRIHT 406
L H R HT
Sbjct: 63 DHLTTHIRTHT 73
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 68 INKKVSYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKA 123
+ K Y CP C H+ IH +K + C IC + F R+ +L HI+
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 310 KKYICEV--CGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHV 363
+ Y C V C + F + H+ H+ + FQC +C + F+ L H R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
C + + + L H+ HT ++ + C C + F + + L +H+ TH
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 182 TNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 237
+ F C++CG TY++ L+ H R +H ++ C CGK FR + ++ H+ VH
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 183
C+ CGK + D + + H R H G + C CG F +N H H N
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIH 153
E+ +FC+ C K + L H +A H R C CGK F D + + H+++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
R C++CGKTY++ + L H H R C CGK F + HL H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKK 464
E+ + C CG ++ + L H+ +H R + C CGK +++ + + HL H K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDT 522
+R + C CGK + L H HL RP C C F+ + +++H + H+ K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 286 CNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
CN CG+ D + L H R H G + C CGK F S H+ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSD 55
+ C CGK+++ L H+ H G + C CG+ ++ + +N+H+K+H +
Sbjct: 5 FFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 239 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQ---CNICGRVMND 295
++RPF CN C T++ L +H + HL GY+ C CG+ D
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHL----------------GYRPRSCPECGKCFRD 44
Query: 296 RTNLKVHMRNH 306
++ + H++ H
Sbjct: 45 QSEVNRHLKVH 55
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
+P+ C+ CG L H R H G + C +CG F + + H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 338 RNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKS 397
R F C C K + +GL H+R H+ R P C CG +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYR---------------PRSCPECGKCFRDQSE 47
Query: 398 LDDHYRIH 405
++ H ++H
Sbjct: 48 VNRHLKVH 55
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 15/65 (23%)
Query: 32 VCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKS 91
C+ CG+TY+ L++H + H R + CP+C S
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPR---------------SCPECGKCFRDQSEVNR 50
Query: 92 HLDIH 96
HL +H
Sbjct: 51 HLKVH 55
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 434 SETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTH 489
S R+ +CS+ CGKTY +HL++H THT ++ + C + C + F + + L H TH
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 450 NPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTK 507
+ + +RSH+ +H CGK + K LK+H TH +PF C + C F
Sbjct: 11 DSSRIRSHICSH--------PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 508 KHLSQHHRTH 517
LS+H RTH
Sbjct: 63 DELSRHRRTH 72
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 128 VREHQCS--VCGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSH 181
+R H CS CGK + +++K H R HTGEK + C + C FA L+ H +H
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH 265
CGK + LK H HT ++PF C+ C F L +H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 26/74 (35%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKK 348
CG+ ++LK H R HTGEK + C G C+++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKG--------------------------CERR 58
Query: 349 FATPAGLREHKRVH 362
FA L H+R H
Sbjct: 59 FARSDELSRHRRTH 72
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 533 KIRDFQC--KVCDRAFFDVYNLKLHMRIHTGEKKY 565
+IR C C + +F +LK H R HTGEK +
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPF 48
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
R + C+VCGKAF D +N+ H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
R + C VC +AF D NL H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y C +CG+ DR+NL H + HTGEK
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
+PY C CG + + +L H +IHTGEK
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
IC VCGK F + L +H +HT ++P
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 312 YIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCT--VCDKKFATPAGLREHKRVHV 363
Y+C E CGK F + + H F+H++ ++C CDK+F+ P+ L+ H++VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 265
CGK F+ QLK H HT P+ C C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN----TQFVCS 189
CGKAF +KVH HT + Y C E C F+L L H H CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 190 YCGNTY 195
+ G T+
Sbjct: 69 FVGKTW 74
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLA 491
CGK +K N L+ H +HT++ Y C E C K F LK H H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 411 YVC--QQCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNHLRSHLNTHT 462
YVC + CG +F + L H+FSH++ C + C K + P+ L+ H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 312 YIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCT--VCDKKFATPAGLREHKRVHV 363
Y+C E CGK F + + H F+H++ ++C CDK+F+ P+ L+ H++VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 265
CGK F+ QLK H HT P+ C C F L L++H KVH
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTN----TQFVCS 189
CGKAF +KVH HT + Y C E C F+L L H H CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 190 YCGNTY 195
+ G T+
Sbjct: 69 FVGKTW 74
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLA 491
CGK +K N L+ H +HT++ Y C E C K F LK H H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 411 YVC--QQCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNHLRSHLNTHT 462
YVC + CG +F + L H+FSH++ C + C K + P+ L+ H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
R ++CS CGKAFA + + +H RIHTGEK
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEK 409
YEC CG + K +L H RIHTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
R ++C C +AF L +H RIHTGEK
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C+ CG+ ++ L +H R HTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGKAF D +N+ H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ DR+NL H + HTGEK
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C C +AF D NL H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY C CG + + +L H +IHTGEK
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHS 434
EK Y C +CG +FT ++LF H+ H+
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHT 36
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C CGKAFA N+ H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY C CG + K +L H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C C +AF NL H RIHTGEK
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ + NL H R HTGEK
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C CGK F K L +H +HT ++P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG G +SK +LD H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C+ C + + +NL +H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ N + NL +H + HTGE+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C CGK + N+ +H ++HTGE+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVR 57
C+ CG+ Y +K +L+ H K+H+ R
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 126 ENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 158
V+ + CS CGKAF + + +HMR HTGEK
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y C+ CG+ ++ L +HMR HTGEK
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
++ + C C +AF L +HMR HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
+KPY C CG SK L H R HTGEK
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C CGK FR K L HM HT ++P
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++CSVCGKAF+ ++ VH RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPYEC CG S ++SL H RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C++CG+ + R +L VH R H+G+K
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C VC +AF +L +H RIH+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
+ C+ C + ++ L HYR HT EK Y C C +FT+ L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQH 513
+VCE C + F + E LK H +H +P+ C C+ F + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 261
+C+VC + F + LK H HT ++P+ C +C F + L +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHS 178
C VC +AFA ++K H R HT EK Y C C +F L H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQ 323
+ C +C R + +LK H R+HT EK Y C +C + F +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSH 485
VC C + + HL+ H +HT ++ Y C C + F + +LL H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 554
F+CE C+ F ++HL +H+R+H + + + C +C+RAF L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE--------------KPYPCGLCNRAFTRRDLLIR 48
Query: 555 H-MRIHTG 561
H +IH+G
Sbjct: 49 HAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F C+VC RAF +LK H R HT EK Y
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPY 31
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 73 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
S+ C C+ K H H EK Y C +C + F R L+ H + +H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 243 FVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVH 302
FVC +C F ++HL++HY+ H + Y C +C R R L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK-------------PYPCGLCNRAFTRRDLLIRH 49
Query: 303 MRN-HTG 308
+ H+G
Sbjct: 50 AQKIHSG 56
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 159 YVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 210
+VCE C +FA L H SHTN + + C C + L H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 312 YICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMID 371
++CEVC + F + H +H+ + + C +C++ F T R +I
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF--------------TRRDLLIR 48
Query: 372 HQRSVH 377
H + +H
Sbjct: 49 HAQKIH 54
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 102 YFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVH-MRIHTG 155
+ C +C + F R +L H ++ H N + + C +C +AF + H +IH+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 339 NFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSL 398
+F C VC + FA L+ H R H KPY C C + + L
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE---------------KPYPCGLCNRAFTRRDLL 46
Query: 399 DDHY-RIHTG 407
H +IH+G
Sbjct: 47 IRHAQKIHSG 56
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ +QC+ CGKAF+ + + H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG S L H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ +QC C +AF L H R+HTGEK
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
YQCN CG+ + + L H R HTGEK
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK F +L H VHT ++P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTNT----QFVCSYCGNTYKNPKALTSHIRNSH 209
+G CE CG + SLN H H T +F C +CG ++ P ++ +H SH
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQV---CSYCGKTYKNPNHLRSH 457
+G C+ CG + Q ASL +H+ H+ET + C +CGK ++ P+ + +H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 283 GYQCNICGRVMNDRTNLKVHMRNHT---GEKKYICEVCGKGF 321
G QC ICG + +L H R H ++ CE CGK F
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 307 TGEKKYICEVCGKGFVQWSSHYYHMFTHSES---RNFQCTVCDKKFATPAGLREHK 359
+G CE+CG Q +S +H H+E+ F C C K+F P + H+
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++CS+CGK+F + + VH +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPYEC CG + K L H +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C+ICG+ ++ L VH + HTGEK
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C +C ++F L +H +IHTGEK
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C +CGK F K QL H +HT ++P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPYEC+ CG S + SL H IHTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGKAF+ +++ H IHTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+ + R++L H HTG+K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK F ++ L H A+HT +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG G + + +LD H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ N R NL +H R H GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C CGK + N+ +H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C+ C + + NL +H R+H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY CD CG S K SL H R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
+ ++C CGKAF+ ++ VH+R+HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 156 EKKYVCETCGASFALWGSLNVHSYSHTNT 184
EK Y C+ CG +F+ GSL VH HT +
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTG 308
Y+C+ CG+ + + +L VH+R HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 408 EKKYVCQQCGASFTQWASLFYH 429
EK Y C QCG +F+Q SL H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVH 30
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
CD CGK F K L H+ VHT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
R H+CS CGK F +N H RIHTGEK
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
R +C C + F N H RIHTGEK
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C+ CG + L +H+RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C+ CGK F +++ H RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y+CN CG+V ++L H R HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ ++C C + F +L H RIHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG S L H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGKAF+ + + H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C C +AF L H RIHTGEK
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+ + + L H R HTGEK
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 96 HNVEKEYFCHICKKVFLRNRNLVCHIKAVH-ENVREHQCSVCGKAFADITNMKVHMR 151
H+ EK Y C+IC F ++ + HI H ENV + C C A +++ VH+R
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVH---SYSHTNTQFVCSYCGNTYKNPKALTSHIRN 207
R H+GEK Y C C A F G++ +H ++ +F C +C L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 208 SHT 210
H+
Sbjct: 68 QHS 70
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHYYHMFT-HSES-RNFQCTVCDKKFATPAGLREHKR 360
R H+GEK Y C +C F Q + H+ H+E+ F C CD A + L H R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFS-HSETRNQV-CSYCGKTYKNPNHLRSHL 458
R H+GEK Y C C A FTQ ++ H H+E + C +C + L HL
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 98 VEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSV 135
V K Y C C K F R +L HIK VH + R H+C V
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYR-IHTGEKKYVCQ 414
KPY C +CG G S L+ H + +HT E+ + CQ
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 465 RLYVCETCGKEFMKLELLKSHL-TTHLAARPFICEFCSAG 503
+ Y+C++CGK F + + L H+ H + RP C+ +G
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 491 AARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV 541
+P+IC+ C GF R D L H+K VH R +C+V
Sbjct: 9 VGKPYICQSCGKGF-------------SRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 440 VCSYCGKTYKNPNHLRSHL-NTHTKKRLYVCET 471
+C CGK + P+HL H+ HT +R + C+
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 216 ICDVCGKEFRMKRQLKEHM-AVHTTDRPFVCNM 247
IC CGK F L H+ VHT++RP C +
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ + CS CGKAF+ + + +HMR H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y C+ CG+ + ++ L +HMR H+GEK
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY C CG SSK L H R H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ + C C +AF L +HMR H+GEK
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTG 407
++PY C CG S K ++ HYR+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTG 155
+R + CSVCGK F+ M+ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVH 265
RP+ C++C F LK + HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHT 238
C VCGK F +K Q++ H VHT
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHT 27
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPYECD C S SL H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ ++C VC +AF +L H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C VC KAF+ ++ H R+H+GEK
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY C+ CG SSK L H RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ + C+ CGK F+ + + VH RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y CN CG+ + ++ L VH R HTGEK
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ + C C + F L +H RIHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C CG G S + +L+ H+++HTGEK
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C CGK F+ + + VH ++HTGEK
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEK 157
++C VCGK F+ ++++ H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
CDVCGKEF L+ H VHT ++P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C++CG+ + ++L+ H R HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEK 409
Y+CD CG S L H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEK 563
++C VC + F +L+ H R+HTGEK
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
++ Y C+ CGKEF + L++H H +P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C CGKAF+ T++ H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPYEC CG S L H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++CK C +AF +L H R+HTGEK
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ + T+L H R HTGEK
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVH--SYSHTN---TQFVCSYCGNTYKNPKALTSHI 205
R HTGEK Y C C +F L++H Y N FVCS CG T+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 206 RN 207
N
Sbjct: 68 DN 69
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN-----QVCSYCGKTYKNPNHLRSH 457
R HTGEK Y C C +F Q L H F N VCS CGKT+ N + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Query: 458 LN 459
+
Sbjct: 67 AD 68
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 236 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMND 295
HT ++P+ C+ C TF+ K+ L H+K + H + C+ CG+
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRY---------HDPNFVPAAFVCSKCGKTFTR 59
Query: 296 RTNLKVHMRNHTGEKKYICEVCGK 319
R + H N G E G
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGP 83
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHL----TTHLAARPFICEFCSAGFKTKKHLSQHHR 515
THT ++ Y C C K F + +LL H + F+C C F + +++H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 516 THKRKDTLEN 525
D +E
Sbjct: 69 NCAGPDGVEG 78
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 95 IHNVEKEYFCHICKKVFLRNRNLVCHIKAVHEN---VREHQCSVCGKAFADITNMKVHMR 151
H EK Y C C K F + + L H K H+ CS CGK F M H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 152 IHTGEKKYVCETCGAS 167
G E G S
Sbjct: 69 NCAGPDGVEGENSGPS 84
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 376 VHELLKPYECDTCGHGLSSKKSLDDHY-RIHTG---EKKYVCQQCGASFTQWASLFYH 429
H KPY C C K+ LD H+ R H +VC +CG +FT+ ++ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 172 GSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT---IHQKSICDVCGKEFRMK 227
GS +HT + + CS+C T++ + L H + H + +C CGK F +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 228 RQLKEHM 234
+ H
Sbjct: 61 NTMARHA 67
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEG---KQRSVCDTCGRTYKTKHSLNQHM 50
YAC C K+F+ K L H + H+ VC CG+T+ ++++ +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C CG G + LD H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C CGK + ++ H R+HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ R +L H R HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
R ++CS CGKAF + + +H RIH GEK
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
R ++C C +AF L +H RIH GEK
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEK 409
YEC CG K +L H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C+ CG+ ++ L +H R H GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
Y+CN C + N ++NL VH R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPYEC+ C ++K +L H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ ++C+ C KAF +N+ VH R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 562
+ ++C C +AF NL +H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP+ CDTC + +L+ H IHTGEK
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 207 NSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRP 242
+S T + CD C K FR + L H +HT ++P
Sbjct: 5 SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F+C CD++F L H IHTGEK
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP+EC CG +K +L H RIHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C+ CGK+F N+ H RIHTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLS 567
+ F+C C ++F NL H RIHTGEK S
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
++C CG+ + NL H R HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP+EC CG S L H RIHTGEK
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C+ CGK+F+ + + H RIHTGEK
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F+C C ++F L H RIHTGEK
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C CGK F + QL H +HT ++P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ FQCK C R F +LK H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C TC S L H R HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
+QC C R + +LK H R HTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
QC C + F+ ++K H R HTGEK
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY CD CG L H RIHTGEK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ + C CGKAF + H RIHTGEK
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
+CD CGK F + +L H +HT ++P
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 156 EKKYVCETCGASFALWGSLNVHSYSHT 182
EK YVC+ CG +F L L H HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F+CK C +AF +L H+RIHTGEK
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C CGKAF ++ H+RIHTGEK
Sbjct: 14 KCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C CG L H RIHTGEK
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C CGK FR L H+ +HT ++P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
++C CG+ +L H+R HTGEK
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
R H+C+ CGK+F ++ H RIHTGEK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
R +C C ++F +L H RIHTGEK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
+P++C+ CG L H RIHTGEK
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GEK YVCQ+CG +FTQ + L H+ H+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ + C CGKAF + + +H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPY C CG + L H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 562
+ + C+ C +AF L +H R+HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTN 183
+GEK YVC+ CG +F L++H HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 305 NHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
+GEK Y+C+ CGK F Q S H H+
Sbjct: 4 GSSGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ ++CS CGK+F + + VH RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPYEC CG K L H RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 562
+ ++C C ++F L +H RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
Y+C+ CG+ ++ L VH R HTGE
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
+KPY C+ CG S SL H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEKK 158
V+ + C+ CGKAF+ +++ H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
++ + C C +AF +L H IHTGEK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
+C+ CGK F + L H +HT ++P
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y CN CG+ + ++L H HTGEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 157 KKYVCETCGASFALWGSLNVHSYSHTN 183
K Y+C CG +F+++ SL H HT
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTG 37
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C CG S L+ H RIHTGEK
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEK 157
C CGKAF+D + H RIHTGEK
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C C +AF D L H RIHTGEK
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGE 156
H+C+ CGKAF+ + + +H RIHTGE
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
K +EC+ CG S K L H RIHTGE
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
++CN CG+ + ++ L +H R HTGE
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY C+ CG L +H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ + C CGKAF + ++ H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ + C+ C +AF L+ H RIHTGEK
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK F QL+EH +HT ++P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY C+ CG S K L H R HTGEK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y CN CG+ + ++ L H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ + C+ CGK F+ + + H R HTGEK
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
++ Y C CGK F + +L +H TH +P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 159 YVCETCGASFALWGSLNVH-SYSHTNTQFVCSYCGNTYKNPKALTSHIRNSH 209
++C CG SFA G+ H H F C YC T+ + LT HI H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 261
+C VCG+ F K + H+ + + F C CP+TF L +H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQH 513
++C CG+ F + HL AA+ F C++C A F + L++H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASF 168
H C VCG++FA + H+R+ + + C+ C A+F
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 312 YICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREH 358
++C VCG+ F + H+ ++ F C C F + GL H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+ R++L +H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG ++ SL H H+GEK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGKAF +++ +H H+GEK
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK FR + L H A H+ ++P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ H+C CGK+F+ + + VH RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KP+EC CG S L H RIHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
QC +CGKAF +++ H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 285 QCNICGRVMNDRTNLKVHMRNHTGEK 310
QC +CG+ ++L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP +C CG + SL H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 538 QCKVCDRAFFDVYNLKLHMRIHTGEK 563
QC +C +AF +L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKK 158
CS CGK F TN+ +H +IHTGE+
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
+ C+ CG+V +TNL +H + HTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
F C C + F NL +H +IHTGE+
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
IC CGK F K L H +HT +RP
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY C+ CG K L+ H RIHTGEK
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEK 157
C+ CGK+F +++ H RIHTGEK
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVH 265
++P++CN C +F K HL +H ++H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
IC+ CGK F K L H +HT ++P
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ + C C ++F +L H RIHTGEK
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHS 434
EK Y+C +CG SF Q + L H+ H+
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
++C+ C + N ++NL VH R HTGEK
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F+C C +AF NL +H R HTGEK
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ +CS C KAF +N+ VH R HTGEK
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP+EC C ++K +L H R HTGEK
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTD 240
+CD+CGK+F+ K LK H +HT D
Sbjct: 11 LCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTNT 184
+GEK Y C+ CG SF+ GSL VH HT +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY+C CG S + SL H R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GEK Y C++CG SF+Q SL H+ H+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
+ +QC CGK+F+ ++ VH R+HTG
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTG 308
YQC CG+ + R +L VH R HTG
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ HQC CG+ F +++ H RIHTGEK
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
K ++C CG G + K L+ H RIHTGEK
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ QC C R F +L H RIHTGEK
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
+QC+ CGR +++L H R HTGEK
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C CG+ F +K L +H +HT ++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++CKVC +AF +L H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPYEC C + K L H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTH 517
+P+ C+ CS F K HL+QH +TH
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C +C + + +L H + HTGEK
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C VC KAF ++ H + HTGEK
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVH 265
++P+ C +C F K HL QH K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C CGK F N+K H+RIH+GEK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+C+ C + F NLK H+RIH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 382 PYECDTCGHGLSSKKSLDDHYRIHTGEK 409
P +C CG ++ +L H RIH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 281 GPGYQCNICGRVMNDRTNLKVHMRNHTGEK 310
GP +C CG+ NLK H+R H+GEK
Sbjct: 1 GP-LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ H C CGK F I+ +++H R+H GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C VCGK FR+ L +H +VH+ +RP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVH 265
++P+ C +C F++ HL QH+ VH
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTH 517
+P+ C+ C F+ HL QHH H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C CG L H+ +H+GE+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C VCGKAF +++ H +H+GE+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C+ CG G ++ L H+ +HTGEK
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMS 571
+ C++C + F DVY+L H H+GEK Y S S
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKY 159
C +CGK F D+ ++ H H+GEK Y
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 286 CNICGRVMNDRTNLKVHMRNHTGEKKY 312
C ICG++ D +L H +H+GEK Y
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C+ CGKAF + + +H +IHTGEK
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F+C C +AF L +H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEK 409
+EC CG + K +L H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
++C CG+ ++ L +H + HTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
+PYEC CG +K SL H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
R ++C CGKAF +++ H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C CG+ +++L H R+HTGEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
R ++C C +AF +L H R HTGEK
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPYEC CG K L H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ ++C+ CGKAF + + +H R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C CG +F L L +H +HT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
Y+C CG+ ++ L +H R HTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPY C+ CG K L H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ + C+ CGKAF + + +H RIHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHT 182
+G+K YVC CG +F L L +H HT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGK 28
Y C ECGK+F K QL H E +H G+
Sbjct: 11 YVCNECGKAFGLKSQLIIH-ERIHTGE 36
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
Y CN CG+ ++ L +H R HTGE
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVH 265
+P+VCN C F LK L H ++H
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIH 33
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+G+K YVC +CG +F + L H+ H+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C CGKAF +N+ H IHTGEK+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRS 31
Y C ECGK+F+T+ L H +++H G++RS
Sbjct: 13 YKCYECGKAFRTRSNLTTH-QVIHTGEKRS 41
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C CG ++ +L H IHTGEK+
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 533 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
K + ++C C +AF NL H IHTGEK+
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y+C CG+ R+NL H HTGEK+
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEKR 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 240 DRPFVCNMCPSTFKLKKHLRQHYKVH 265
++P+ CN+C F L HL QH +VH
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ + C+VCGKAF ++ H+R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPY C+ CG L+ H R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTD 240
C+VCGK F + L +H+ VHT +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 562
+ + C VC +AF +L H+R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C VC K+F +++ VH RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+CD C SL H RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ ++C VC ++F +L +H RIHTGEK
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
CDVC K FR L H +HT ++P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y+C++C + ++L VH R HTGEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C+ CGKAF +N+ H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C+ CG + +L H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y+CN CG+ +NL H HTGEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ ++C C +AF NL H IHTGEK
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK FR L H +HT ++P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGE 408
+KPY C+ CG SK L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
Y CN CG+ ++ L +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGE 156
++ + C+ CGKAF + + +H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C+ CG + L H R+HTGEK
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C CGK F + + H R+HTGEK
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F+C+ C + F L H R+HTGEK
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK F QL H VHT ++P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
++ Y CE CG F L+ LKSHL H + P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
+ + C +CG F + +K H+RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY C+ CG ++L H RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C++CG FR + LK H+ +HT P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTG 561
+ + C++C F + LK H+RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C+ CG + L H R+HTGEK
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
QC CGK F +++ H R+HTGEK
Sbjct: 14 QCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ FQC+ C + F +L H R+HTGEK
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
+QC CG+ ++L H R HTGEK
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 180 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHM 234
S +QFVC C + + +L HIR +T H K +C VC KEF +H+
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIR--YTEHTK-VCPVCKKEFTSTDSALDHV 120
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 412 VCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCET 471
VC CG FT L Y + + + C +C Y++P + R H C
Sbjct: 130 VCTNCGPRFTIIEDLPYDRENTTXKEFPXCDFCRSEYEDPLNRRYHAEPTA------CPV 183
Query: 472 CGKEF 476
CG +
Sbjct: 184 CGPSY 188
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F+C C + F +L +H RIHTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C+ C K F +++ VH RIHTGEK
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
++CN C + ++L VH R HTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C CGKAF D ++ H R+HTG++
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C CG S H R+HTG++
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 382 PYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
PYEC CG S K L H R H GEK
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
++C C +AF Y L H R H GEK
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y+C+ CG+ + + L H R H GEK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRS 31
Y C ECGK+F K QL +H+ H G++ S
Sbjct: 13 YECHECGKAFSRKYQLISHQR-THAGEKPS 41
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 227 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 263
K L+ H +H TDRPF CN C K +L +H K
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++CK C + F + +L H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPYEC C L+ H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C C K F I ++ H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
+KPY C C + +L H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
++ + C C R F D L+ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEK 157
++ + C C + FAD ++ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG L H RIHTGEK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+V + L H R HTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGK F + + H RIHTGEK
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++CS CGK+F + +++H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C+ CG+ ++ L++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C CG + K L H + HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C+ CG + L +H RIHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
Y+CN CG+V ++L H R HTG K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ ++C+ CGK F +++ H RIHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++CS CGKAF + + +H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+C+ CG+ ++ L +H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C CG + K L H + HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETR 437
EK Y C CG +FT+ + L H+ SH+ R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 280 TGPGYQCNICGRVMNDRTNLKVHMRNHTGEK 310
+G Y+C C + NL VH+R HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C C + + K +L+ H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C C A A N+ VH+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C C A NL +H+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
CD+CGK F + +L H VHT ++P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++CD CG + L+ H +HT EK
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+V + + L H + HTGEK
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGK F+ + + H +IHTGEK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
K Y+C+ CG S L H +IHTGEK
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK F QL +H +HT ++P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 382 PYECDTCGHGLSSKKSLDDHYRIHTGE 408
PYEC CG + K L H R H GE
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGE 309
Y+C+ CG+ N + L H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ ++CS CGKAF + + VH R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPYEC CG L H R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHS 434
T EK Y C +CG +F + + L H+ +HS
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK YVC CG +F L VH HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GEK YVC CG +FT + L H+ H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY C CG + K L H IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
+ + CS CGKAF + + VH IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
+ ++CS CGKAF T++ H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY+C CG L++H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVH 265
RPFVC +C S F K + +H KVH
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLE 524
RPF+C C + F TK + ++H + H DTL
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH--TDTLS 35
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C CG + + L H R+HTGEK
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
++C CG+ N R +L H R HTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F+C C +++ +L H R+HTGEK
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
+C CGK++ ++ H R+HTGEK
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+EH+C C K F + N+K H++IH +
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ ++C+ CD F +L+LH +H GEK
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIKAVHE-NVREHQCSVCGKAFADITNMKVHMRI 152
E Y C +C +V+ N H H+ NV+ + C C K F NM H++I
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 73 SYKCPDCSVIVVSYSGFKSHLDI---HNVEKEYFCHICKKVFLRNRNLVCHIKAVHE 126
+Y+C CS + S F H NV K Y C C K F R N+ H+K +H+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNV-KVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSET 436
E Y+C QCG SFTQ SL H+ S S++
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDT---LENHMKAVHEKIRDF 537
++C C+A F T LS+H R+ R D L M ++ IR F
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM--INNAIRSF 160
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDT---LENHMKAVHEKIRDF 537
++C C+A F T LS+H R+ R D L M ++ IR F
Sbjct: 99 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM--INNAIRSF 142
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C+ CGK F K QL H VHT +P
Sbjct: 13 CNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRS 31
Y+C ECGK+F K QL HK VH G + S
Sbjct: 11 YSCNECGKAFTFKSQLIVHKG-VHTGVKPS 39
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSETR 437
+GEK Y C +CG +FT + L HK H+ +
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGE 156
H+CS C K F+ + + +H RIHTGE
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGE 36
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
++ Y CETCG F+++ L++H+ H + P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 156 EKKYVCETCGASFALWGSLNVHSYSHTNT 184
EK Y CETCGA F L H HT +
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGS 37
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
+ ++C CG F + +++ H+ IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY+C+TCG L H IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTG 561
R ++C+ C ++F +L LH RIHTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTG 155
R ++C CGK+F ++ +H RIHTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 MYACEECGKSFKTKIQLCAHKELVHEGKQRS 31
+Y C+ECGKSF+ K L H E +H G S
Sbjct: 10 VYECQECGKSFRQKGSLTLH-ERIHTGSGPS 39
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+G++ Y CQ+CG SF Q SL H+ H+ +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTNT 184
+G++ Y C+ CG SF GSL +H HT +
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTG 407
YEC CG K SL H RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRP 242
C CGK FR K L H +HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 239 TDRPFVCNMCPSTFKLKKHLRQHYKVH 265
T + + C+ C +TF L+KHL QH K H
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTH 35
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYR-IHTGEKK 410
KPYEC CG SL H+R HTGEK
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDT 522
RPF C C GF + HL+ H R H R+ +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKS 40
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
+P++C+ CG G + L H R+H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKK 158
H+C C + F D TN+K H R +K+
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHKKR 78
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 27 GKQRSVCDTCGRTYKTKHSLNQHMKIHSD 55
GK+ VC+ CG+T++ L++H +IHS
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSG 35
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
+C+ CGK FR L +H +H+ ++P
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEK 157
C+ CGK F + + H RIH+GEK
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG + L H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+V ++L H HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG + L H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+V ++L H HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|3J21|II Chain i, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 83
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 121 IKAVHENVRE-HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 169
+ AV +R+ H C VCG+ K RI TG + C+ CGA+FA
Sbjct: 25 VAAVEAKMRQKHTCPVCGR--------KAVKRISTG--IWQCQKCGATFA 64
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG + L H R+HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+V ++L H R HTG K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGK F +++ H R+HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F C+VC RAF +LK H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 495 FICEFCSAGFKTKKHLSQHHRTH 517
F+CE C+ F ++HL +H+R+H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 243 FVCNMCPSTFKLKKHLRQHYKVH 265
FVC +C F ++HL++HY+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEK 157
C VC +AFA ++K H R HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F C+VC RAF LK H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEK 157
++ +QC CG++F+D T+ H+ H +K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 107 CKKVFLRNRNLVCHIKAVHENVREHQCSVC--------GKAFADITNMKVHMRIHTGEK 157
C + F LV H+ H E VC GK+F + H+R+HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C+ CG + L H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y+CN CG+V ++L H HTGEK
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C+ CGK F +++ H IHTGEK
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 129 REHQCSVCGKAFADITNMKVHMRI-HTGEK 157
+ +QC C K FAD +N+K H++ H+ EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY C CG L H R+H+GEK
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|4DLQ|A Chain A, Crystal Structure Of The Gain And Hormr Domains Of Cirl
1LATROPHILIN 1 (Cl1)
Length = 381
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 438 NQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGK-EFMK--LELLKSHLTTHLAARP 494
NQV K+ +N ++ S L HT+ +Y + + M+ L++L + L A RP
Sbjct: 82 NQVAQKI-KSGENAANIASELARHTRGSIYAGDVSSSVKLMEQLLDILDAQLQ---ALRP 137
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDF 537
E SAG +++ HKR+ T ++++KAV E + +
Sbjct: 138 I--ERESAG-------KNYNKMHKRERTCKDYIKAVVETVDNL 171
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEK 157
++H C + CGK + ++++ H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKR 465
CGK Y +HLR+HL HT +R
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 280 TGPGYQCNICGRVMNDRTNLKVHMRNHTGEK 310
+G ++C++C ++NLK HM H+ EK
Sbjct: 6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F C+ C++ F ++L+ H+RIHT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 32 VCDTCGRTYKTKHSLNQHMKIHSD 55
C+ C + +K KHSL H++IH++
Sbjct: 11 TCEYCNKVFKFKHSLQAHLRIHTN 34
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
KPY+C CG S L H+ HT EK
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGE 156
+ + C+ CGKAF ++ H RIHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGE 408
KPY C CG K H RIHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F C+VC RAF LK H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEK 157
V ++CS C K+F+ + VH R+HT EK
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRP 242
IC CGK F ++ L +H +HT +P
Sbjct: 14 ICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETR 437
EK Y+C +CG +FT ++L H+ H++ +
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 494 PFICEFCSAGFKTKKHLSQHHRTHKRK 520
PF C C F + +L QH RTH RK
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARK 38
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEKK 158
V+ + CS C K F+ + + VH R HTG K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP++C+ CG G + H R H+GEK
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPYEC+ CG K L H R H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.133 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,413,450
Number of Sequences: 62578
Number of extensions: 772021
Number of successful extensions: 5709
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2485
Number of HSP's gapped (non-prelim): 2737
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)