Query psy63
Match_columns 585
No_of_seqs 579 out of 2881
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 22:51:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy63.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/63hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 100.0 2.7E-31 5.9E-36 260.1 3.8 236 283-520 605-933 (958)
2 KOG1074|consensus 100.0 9.9E-31 2.1E-35 256.2 4.1 302 283-584 353-927 (958)
3 KOG2462|consensus 100.0 5.5E-29 1.2E-33 214.9 5.3 134 380-515 128-264 (279)
4 KOG3608|consensus 99.9 3.6E-28 7.9E-33 214.5 9.6 267 283-578 69-400 (467)
5 KOG2462|consensus 99.9 2.2E-28 4.8E-33 211.1 6.4 126 439-580 131-259 (279)
6 KOG3608|consensus 99.9 5.3E-27 1.1E-31 207.2 13.2 231 243-491 135-377 (467)
7 KOG3623|consensus 99.9 6.6E-25 1.4E-29 211.6 6.6 118 214-331 210-329 (1007)
8 KOG3623|consensus 99.9 4.4E-25 9.4E-30 212.9 5.1 93 337-431 238-330 (1007)
9 KOG3576|consensus 99.8 2E-19 4.3E-24 146.9 2.1 129 435-566 114-242 (267)
10 KOG3576|consensus 99.7 8.7E-18 1.9E-22 137.4 3.2 114 408-521 115-239 (267)
11 PLN03086 PRLI-interacting fact 99.3 7.7E-12 1.7E-16 123.8 7.7 145 340-518 408-564 (567)
12 PLN03086 PRLI-interacting fact 99.2 3.6E-11 7.7E-16 119.1 7.0 144 383-559 408-563 (567)
13 PHA00733 hypothetical protein 99.1 3.9E-11 8.5E-16 96.3 4.5 81 436-519 38-124 (128)
14 PHA00733 hypothetical protein 99.1 4.9E-11 1.1E-15 95.7 4.3 96 451-562 25-125 (128)
15 PHA02768 hypothetical protein; 99.0 1.9E-10 4.1E-15 74.4 1.8 43 536-580 5-47 (55)
16 PHA02768 hypothetical protein; 98.9 4.5E-10 9.7E-15 72.7 2.4 44 466-511 5-48 (55)
17 KOG1146|consensus 98.9 1.5E-09 3.3E-14 114.5 6.1 90 467-562 1261-1354(1406)
18 KOG3993|consensus 98.8 1.8E-09 3.9E-14 99.6 2.0 179 382-560 267-482 (500)
19 KOG3993|consensus 98.8 1.9E-09 4.2E-14 99.4 1.0 52 467-518 431-482 (500)
20 PF13465 zf-H2C2_2: Zinc-finge 98.8 3.2E-09 6.9E-14 58.7 1.3 26 551-576 1-26 (26)
21 PF13465 zf-H2C2_2: Zinc-finge 98.7 6.7E-09 1.4E-13 57.4 1.7 25 481-505 1-25 (26)
22 PHA00616 hypothetical protein 98.6 1.7E-08 3.8E-13 62.0 1.8 39 536-574 1-39 (44)
23 PHA00616 hypothetical protein 98.5 6.5E-08 1.4E-12 59.4 1.5 34 466-499 1-34 (44)
24 KOG1146|consensus 98.4 1.3E-07 2.9E-12 100.2 3.6 77 76-152 439-540 (1406)
25 PHA00732 hypothetical protein 98.3 2.8E-07 6E-12 66.6 2.6 49 494-561 1-49 (79)
26 PHA00732 hypothetical protein 98.3 5.1E-07 1.1E-11 65.2 2.9 47 466-518 1-48 (79)
27 PF05605 zf-Di19: Drought indu 98.3 1.5E-06 3.2E-11 58.3 4.4 50 2-54 3-53 (54)
28 PF05605 zf-Di19: Drought indu 98.1 3.4E-06 7.4E-11 56.6 3.6 50 102-154 3-53 (54)
29 PF00096 zf-C2H2: Zinc finger, 97.9 5.6E-06 1.2E-10 44.5 1.6 23 537-559 1-23 (23)
30 PF00096 zf-C2H2: Zinc finger, 97.8 1.4E-05 3.1E-10 42.9 1.6 22 467-488 1-22 (23)
31 PF13894 zf-C2H2_4: C2H2-type 97.6 3.1E-05 6.8E-10 42.1 1.8 24 537-560 1-24 (24)
32 PF13912 zf-C2H2_6: C2H2-type 97.5 4.4E-05 9.6E-10 42.8 1.5 26 536-561 1-26 (27)
33 PF12756 zf-C2H2_2: C2H2 type 97.5 4.5E-05 9.7E-10 59.6 2.0 25 536-560 50-74 (100)
34 COG5189 SFP1 Putative transcri 97.5 3E-05 6.4E-10 69.4 0.7 66 491-556 346-418 (423)
35 PF13894 zf-C2H2_4: C2H2-type 97.4 0.00011 2.4E-09 39.9 1.8 22 2-23 1-22 (24)
36 PF09237 GAGA: GAGA factor; I 97.4 0.0001 2.2E-09 46.3 1.8 33 532-564 20-52 (54)
37 PF12756 zf-C2H2_2: C2H2 type 97.4 0.00012 2.5E-09 57.2 2.4 73 187-265 1-73 (100)
38 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00013 2.7E-09 40.9 1.5 23 467-489 2-24 (27)
39 PF13909 zf-H2C2_5: C2H2-type 97.0 0.00039 8.4E-09 37.6 1.6 24 537-561 1-24 (24)
40 PF09237 GAGA: GAGA factor; I 97.0 0.00059 1.3E-08 43.0 2.3 41 118-158 12-52 (54)
41 smart00355 ZnF_C2H2 zinc finge 96.9 0.00068 1.5E-08 37.4 2.1 25 537-561 1-25 (26)
42 COG5189 SFP1 Putative transcri 96.9 0.00037 8E-09 62.6 1.3 69 28-121 347-418 (423)
43 KOG2231|consensus 96.8 0.002 4.4E-08 65.7 6.0 105 384-518 117-236 (669)
44 smart00355 ZnF_C2H2 zinc finge 96.6 0.0017 3.7E-08 35.8 2.1 22 468-489 2-23 (26)
45 PRK04860 hypothetical protein; 96.5 0.0011 2.3E-08 55.6 1.4 41 535-579 118-158 (160)
46 PF13909 zf-H2C2_5: C2H2-type 96.4 0.0019 4.1E-08 34.9 1.5 21 467-488 1-21 (24)
47 PF12874 zf-met: Zinc-finger o 96.4 0.002 4.2E-08 35.2 1.4 23 537-559 1-23 (25)
48 PF12874 zf-met: Zinc-finger o 96.3 0.0023 5E-08 34.9 1.5 22 31-52 1-22 (25)
49 PRK04860 hypothetical protein; 96.2 0.0023 4.9E-08 53.7 1.7 39 466-508 119-157 (160)
50 KOG2231|consensus 96.0 0.017 3.7E-07 59.2 7.0 96 13-125 126-236 (669)
51 KOG2482|consensus 95.9 0.012 2.6E-07 53.9 4.6 168 15-182 129-358 (423)
52 COG5236 Uncharacterized conser 95.8 0.015 3.2E-07 53.3 4.8 130 2-154 152-305 (493)
53 KOG2785|consensus 95.8 0.025 5.5E-07 53.1 6.3 51 2-52 4-90 (390)
54 KOG2785|consensus 95.7 0.019 4.2E-07 53.8 5.2 177 185-361 3-242 (390)
55 COG5048 FOG: Zn-finger [Genera 95.6 0.0069 1.5E-07 62.3 2.7 155 410-576 289-458 (467)
56 PF12171 zf-C2H2_jaz: Zinc-fin 95.6 0.0036 7.8E-08 34.9 0.1 22 537-558 2-23 (27)
57 PF12171 zf-C2H2_jaz: Zinc-fin 95.5 0.0048 1E-07 34.4 0.4 22 31-52 2-23 (27)
58 KOG2482|consensus 95.2 0.04 8.8E-07 50.6 5.4 77 284-362 280-357 (423)
59 COG5236 Uncharacterized conser 94.8 0.025 5.4E-07 51.8 3.2 19 193-211 289-307 (493)
60 TIGR00622 ssl1 transcription f 94.3 0.099 2.1E-06 40.3 4.8 90 382-489 15-104 (112)
61 PF13913 zf-C2HC_2: zinc-finge 94.1 0.053 1.1E-06 29.4 2.2 20 2-22 3-22 (25)
62 COG5048 FOG: Zn-finger [Genera 93.5 0.031 6.7E-07 57.4 1.3 139 381-519 288-443 (467)
63 KOG2893|consensus 93.5 0.024 5.1E-07 49.0 0.3 49 493-560 10-59 (341)
64 PF13913 zf-C2HC_2: zinc-finge 93.5 0.056 1.2E-06 29.3 1.7 21 537-558 3-23 (25)
65 smart00451 ZnF_U1 U1-like zinc 92.1 0.086 1.9E-06 31.4 1.3 23 494-516 3-25 (35)
66 TIGR00622 ssl1 transcription f 91.5 0.57 1.2E-05 36.3 5.4 99 2-120 2-100 (112)
67 smart00451 ZnF_U1 U1-like zinc 91.5 0.16 3.4E-06 30.3 2.0 23 30-52 3-25 (35)
68 KOG4173|consensus 90.8 0.15 3.2E-06 43.3 1.8 78 72-152 78-168 (253)
69 KOG2893|consensus 90.6 0.086 1.9E-06 45.7 0.3 47 76-126 13-59 (341)
70 cd00350 rubredoxin_like Rubred 90.1 0.18 3.9E-06 29.5 1.3 10 493-502 16-25 (33)
71 KOG4173|consensus 88.8 0.16 3.4E-06 43.1 0.6 74 410-486 79-166 (253)
72 COG4049 Uncharacterized protei 88.2 0.21 4.6E-06 32.2 0.7 25 70-94 14-38 (65)
73 PF12013 DUF3505: Protein of u 87.6 0.69 1.5E-05 36.4 3.5 26 536-561 80-109 (109)
74 PF12013 DUF3505: Protein of u 86.3 1.4 3E-05 34.7 4.6 25 131-155 81-109 (109)
75 COG4049 Uncharacterized protei 85.2 0.48 1E-05 30.6 1.1 30 97-126 13-42 (65)
76 PF09986 DUF2225: Uncharacteri 82.8 0.37 8.1E-06 43.2 -0.1 54 492-549 3-61 (214)
77 cd00729 rubredoxin_SM Rubredox 81.4 0.88 1.9E-05 26.8 1.2 9 494-502 18-26 (34)
78 PF09538 FYDLN_acid: Protein o 81.2 1 2.2E-05 35.0 1.8 30 2-43 10-39 (108)
79 PRK00398 rpoP DNA-directed RNA 78.0 1.1 2.3E-05 28.8 0.8 30 1-41 3-32 (46)
80 PF09986 DUF2225: Uncharacteri 78.0 0.57 1.2E-05 42.0 -0.6 13 383-395 49-61 (214)
81 TIGR01384 TFS_arch transcripti 76.9 0.89 1.9E-05 35.4 0.3 27 3-42 2-28 (104)
82 PF10571 UPF0547: Uncharacteri 76.8 1.8 3.9E-05 23.7 1.4 11 383-393 15-25 (26)
83 TIGR02098 MJ0042_CXXC MJ0042 f 76.0 1.5 3.3E-05 26.6 1.1 34 2-41 3-36 (38)
84 PF09538 FYDLN_acid: Protein o 75.8 1.8 4E-05 33.6 1.7 13 437-449 25-37 (108)
85 PF13717 zinc_ribbon_4: zinc-r 74.1 2.2 4.7E-05 25.6 1.4 33 340-392 3-35 (36)
86 PF13719 zinc_ribbon_5: zinc-r 72.7 2.4 5.3E-05 25.5 1.4 34 2-41 3-36 (37)
87 smart00659 RPOLCX RNA polymera 71.2 2.1 4.5E-05 27.0 0.9 28 1-40 2-29 (44)
88 PRK00464 nrdR transcriptional 69.5 1.6 3.5E-05 36.4 0.2 13 340-352 29-41 (154)
89 COG1592 Rubrerythrin [Energy p 69.5 2.6 5.7E-05 35.5 1.4 24 466-502 134-157 (166)
90 COG1592 Rubrerythrin [Energy p 68.1 2.9 6.3E-05 35.3 1.4 23 494-543 134-156 (166)
91 KOG2186|consensus 67.9 2.9 6.2E-05 37.3 1.4 47 2-52 4-50 (276)
92 TIGR02300 FYDLN_acid conserved 67.1 3.8 8.2E-05 32.4 1.7 33 2-46 10-42 (129)
93 smart00614 ZnF_BED BED zinc fi 66.5 4.2 9.1E-05 26.5 1.6 24 537-560 19-48 (50)
94 PRK14890 putative Zn-ribbon RN 64.8 5 0.00011 26.9 1.7 11 29-39 24-34 (59)
95 KOG2186|consensus 64.4 3.2 7E-05 37.0 1.0 46 439-487 4-49 (276)
96 PF02892 zf-BED: BED zinc fing 64.3 5.5 0.00012 25.2 1.9 21 102-122 17-41 (45)
97 COG2888 Predicted Zn-ribbon RN 64.2 6.3 0.00014 26.3 2.0 14 29-42 26-39 (61)
98 PF03604 DNA_RNApol_7kD: DNA d 63.9 4.3 9.3E-05 23.5 1.1 27 2-40 1-27 (32)
99 smart00834 CxxC_CXXC_SSSS Puta 63.5 3.7 8E-05 25.3 0.9 10 131-140 6-15 (41)
100 PHA00626 hypothetical protein 63.4 3.1 6.7E-05 27.3 0.5 12 466-477 23-34 (59)
101 TIGR00373 conserved hypothetic 63.1 6.8 0.00015 33.2 2.7 18 409-426 108-125 (158)
102 smart00734 ZnF_Rad18 Rad18-lik 62.9 5.6 0.00012 21.7 1.4 20 537-557 2-21 (26)
103 PF00301 Rubredoxin: Rubredoxi 62.7 6.3 0.00014 25.3 1.8 13 379-391 31-43 (47)
104 PRK00464 nrdR transcriptional 62.1 2.8 6.1E-05 35.0 0.3 13 102-114 29-41 (154)
105 PF15269 zf-C2H2_7: Zinc-finge 61.8 5 0.00011 24.7 1.2 22 537-558 21-42 (54)
106 PF02176 zf-TRAF: TRAF-type zi 61.4 4.5 9.8E-05 27.5 1.2 21 451-471 23-43 (60)
107 TIGR02605 CxxC_CxxC_SSSS putat 60.5 4.2 9.1E-05 26.7 0.8 11 131-141 6-16 (52)
108 PF12907 zf-met2: Zinc-binding 59.7 6.2 0.00013 24.2 1.4 27 2-28 2-31 (40)
109 cd00730 rubredoxin Rubredoxin; 59.7 7.5 0.00016 25.3 1.8 12 340-351 2-13 (50)
110 PF06524 NOA36: NOA36 protein; 59.6 4.2 9.1E-05 36.4 0.9 27 492-518 207-233 (314)
111 KOG2807|consensus 59.4 14 0.0003 34.6 4.1 76 29-120 289-364 (378)
112 KOG2807|consensus 59.4 17 0.00036 34.0 4.6 100 213-346 275-374 (378)
113 smart00531 TFIIE Transcription 59.0 10 0.00022 31.7 3.1 13 410-422 99-111 (147)
114 KOG2071|consensus 58.9 5.9 0.00013 40.4 1.9 27 464-490 416-442 (579)
115 TIGR02300 FYDLN_acid conserved 58.8 6.8 0.00015 31.1 1.8 11 438-448 26-36 (129)
116 PRK09678 DNA-binding transcrip 58.6 3.3 7.1E-05 29.4 0.1 7 499-505 34-40 (72)
117 PF08274 PhnA_Zn_Ribbon: PhnA 58.0 3.7 8.1E-05 23.3 0.2 26 3-40 4-29 (30)
118 PF12907 zf-met2: Zinc-binding 57.3 4.6 9.9E-05 24.8 0.5 27 102-128 2-31 (40)
119 smart00531 TFIIE Transcription 57.2 11 0.00025 31.4 3.1 36 100-140 98-133 (147)
120 COG1996 RPC10 DNA-directed RNA 57.2 5.2 0.00011 25.8 0.8 11 466-476 6-16 (49)
121 TIGR00373 conserved hypothetic 56.7 8.8 0.00019 32.5 2.3 31 464-503 107-137 (158)
122 COG5151 SSL1 RNA polymerase II 56.5 13 0.00028 34.3 3.3 78 283-362 322-411 (421)
123 PF06524 NOA36: NOA36 protein; 56.4 11 0.00024 33.8 2.9 84 127-232 139-227 (314)
124 PF05443 ROS_MUCR: ROS/MUCR tr 55.9 6.1 0.00013 32.0 1.1 25 537-564 73-97 (132)
125 PF15269 zf-C2H2_7: Zinc-finge 55.7 14 0.00031 22.8 2.4 25 71-95 18-42 (54)
126 PRK06266 transcription initiat 54.5 11 0.00024 32.6 2.7 17 410-426 117-133 (178)
127 PRK06266 transcription initiat 54.4 9.1 0.0002 33.1 2.1 30 100-139 116-145 (178)
128 PF09723 Zn-ribbon_8: Zinc rib 54.2 6.2 0.00014 24.6 0.8 9 160-168 7-15 (42)
129 PF07754 DUF1610: Domain of un 52.5 5.3 0.00012 21.3 0.2 7 2-8 17-23 (24)
130 PRK00432 30S ribosomal protein 52.0 10 0.00022 24.7 1.6 12 29-40 36-47 (50)
131 KOG2593|consensus 49.3 13 0.00029 36.3 2.5 36 99-138 126-161 (436)
132 COG1997 RPL43A Ribosomal prote 49.0 12 0.00025 27.4 1.5 31 1-42 35-65 (89)
133 KOG2071|consensus 48.8 14 0.0003 37.9 2.6 27 436-462 416-442 (579)
134 COG1594 RPB9 DNA-directed RNA 46.5 11 0.00024 29.7 1.2 18 27-44 19-36 (113)
135 PF02176 zf-TRAF: TRAF-type zi 46.0 11 0.00024 25.6 1.1 44 535-579 8-57 (60)
136 COG1198 PriA Primosomal protei 45.9 15 0.00032 39.6 2.4 10 437-446 474-483 (730)
137 COG1198 PriA Primosomal protei 45.8 15 0.00033 39.5 2.5 40 439-503 445-484 (730)
138 KOG2272|consensus 44.9 14 0.0003 33.0 1.7 14 157-170 220-233 (332)
139 PRK04023 DNA polymerase II lar 44.8 22 0.00047 39.1 3.4 11 495-505 664-674 (1121)
140 KOG4377|consensus 44.2 18 0.00039 34.9 2.5 25 537-561 402-428 (480)
141 KOG4167|consensus 42.7 7.1 0.00015 40.6 -0.4 27 535-561 791-817 (907)
142 KOG2593|consensus 40.1 18 0.0004 35.4 1.9 17 2-18 129-145 (436)
143 COG4530 Uncharacterized protei 38.6 19 0.00041 27.4 1.4 27 3-41 11-37 (129)
144 PRK04023 DNA polymerase II lar 38.3 34 0.00073 37.8 3.6 7 384-390 628-634 (1121)
145 PF04959 ARS2: Arsenite-resist 38.2 20 0.00044 31.9 1.7 31 180-210 72-102 (214)
146 PF04959 ARS2: Arsenite-resist 36.0 28 0.00061 31.1 2.3 28 99-126 75-102 (214)
147 KOG4167|consensus 35.9 10 0.00023 39.5 -0.4 27 129-155 791-817 (907)
148 PF12760 Zn_Tnp_IS1595: Transp 35.3 91 0.002 19.8 4.0 9 159-167 19-27 (46)
149 PRK10220 hypothetical protein; 34.8 29 0.00062 26.7 1.8 30 3-44 5-34 (111)
150 TIGR00686 phnA alkylphosphonat 33.9 26 0.00057 26.9 1.5 30 3-44 4-33 (109)
151 PF05495 zf-CHY: CHY zinc fing 33.8 12 0.00026 26.6 -0.3 12 438-449 41-52 (71)
152 KOG3214|consensus 33.6 12 0.00026 28.0 -0.3 44 532-579 19-62 (109)
153 KOG2272|consensus 33.5 48 0.001 29.7 3.2 97 158-256 137-235 (332)
154 KOG1280|consensus 33.3 47 0.001 31.6 3.3 37 185-221 79-116 (381)
155 PF14353 CpXC: CpXC protein 33.3 20 0.00044 29.0 0.9 8 161-168 4-11 (128)
156 COG5188 PRP9 Splicing factor 3 32.9 62 0.0013 30.7 4.0 24 310-333 237-260 (470)
157 KOG4377|consensus 32.7 32 0.0007 33.4 2.2 126 382-519 271-428 (480)
158 COG4957 Predicted transcriptio 32.3 25 0.00054 28.1 1.2 25 537-564 77-101 (148)
159 PF13451 zf-trcl: Probable zin 31.7 40 0.00086 21.9 1.8 11 102-112 5-15 (49)
160 PTZ00255 60S ribosomal protein 31.5 20 0.00042 26.7 0.5 12 30-41 54-65 (90)
161 PF13878 zf-C2H2_3: zinc-finge 31.0 39 0.00085 20.9 1.7 24 31-54 14-39 (41)
162 PF13453 zf-TFIIB: Transcripti 30.5 39 0.00084 20.8 1.6 16 102-117 20-35 (41)
163 KOG1280|consensus 30.1 37 0.0008 32.2 2.1 37 101-137 79-116 (381)
164 PRK14714 DNA polymerase II lar 29.8 51 0.0011 37.5 3.4 54 411-506 668-721 (1337)
165 TIGR01206 lysW lysine biosynth 28.9 27 0.00059 23.2 0.8 31 2-41 3-33 (54)
166 smart00661 RPOL9 RNA polymeras 28.8 41 0.00088 21.9 1.7 30 4-42 3-32 (52)
167 PF09963 DUF2197: Uncharacteri 28.7 36 0.00078 22.8 1.3 10 128-137 29-38 (56)
168 TIGR00280 L37a ribosomal prote 28.5 22 0.00047 26.5 0.3 12 30-41 53-64 (91)
169 PF05443 ROS_MUCR: ROS/MUCR tr 28.3 31 0.00068 28.0 1.2 23 467-492 73-95 (132)
170 PF08271 TF_Zn_Ribbon: TFIIB z 28.1 45 0.00098 20.8 1.7 12 100-111 18-29 (43)
171 COG5151 SSL1 RNA polymerase II 27.6 49 0.0011 30.7 2.4 25 536-560 388-412 (421)
172 PF04780 DUF629: Protein of un 27.5 40 0.00088 34.0 2.0 25 3-27 59-83 (466)
173 PF05290 Baculo_IE-1: Baculovi 27.3 63 0.0014 26.0 2.6 16 380-395 78-93 (140)
174 PRK14714 DNA polymerase II lar 27.2 62 0.0013 36.9 3.5 7 383-389 668-674 (1337)
175 smart00440 ZnF_C2C2 C2C2 Zinc 27.0 26 0.00056 21.6 0.4 10 102-111 29-38 (40)
176 TIGR00595 priA primosomal prot 26.6 46 0.00099 34.6 2.4 47 411-501 214-260 (505)
177 PF04810 zf-Sec23_Sec24: Sec23 26.2 35 0.00075 21.0 0.9 33 73-111 2-34 (40)
178 KOG2907|consensus 26.2 51 0.0011 25.6 1.9 29 4-43 10-38 (116)
179 COG3357 Predicted transcriptio 26.1 47 0.001 24.5 1.6 14 338-351 57-70 (97)
180 PRK14873 primosome assembly pr 25.9 45 0.00097 35.9 2.2 25 463-503 407-431 (665)
181 KOG4124|consensus 25.7 22 0.00049 33.5 -0.1 51 534-584 347-418 (442)
182 PF01096 TFIIS_C: Transcriptio 25.4 17 0.00037 22.2 -0.6 10 102-111 29-38 (39)
183 smart00154 ZnF_AN1 AN1-like Zi 25.4 35 0.00075 20.9 0.7 14 494-507 12-25 (39)
184 PF08790 zf-LYAR: LYAR-type C2 25.1 22 0.00049 19.8 -0.1 20 537-557 1-20 (28)
185 PF01780 Ribosomal_L37ae: Ribo 24.2 33 0.00071 25.6 0.6 13 129-141 52-64 (90)
186 PF03811 Zn_Tnp_IS1: InsA N-te 24.1 32 0.00068 20.6 0.4 29 440-472 7-35 (36)
187 PF09845 DUF2072: Zn-ribbon co 23.9 43 0.00094 26.9 1.2 15 466-480 1-15 (131)
188 PF13824 zf-Mss51: Zinc-finger 23.3 60 0.0013 21.6 1.6 16 26-41 10-25 (55)
189 PRK03824 hypA hydrogenase nick 23.2 38 0.00083 27.8 0.9 8 340-347 108-115 (135)
190 PF04780 DUF629: Protein of un 23.1 56 0.0012 33.0 2.1 28 185-212 57-84 (466)
191 PF01363 FYVE: FYVE zinc finge 22.6 36 0.00078 23.9 0.5 26 537-574 10-35 (69)
192 PRK03976 rpl37ae 50S ribosomal 22.3 31 0.00067 25.7 0.1 12 30-41 54-65 (90)
193 KOG0717|consensus 22.3 46 0.001 33.1 1.3 39 102-154 293-332 (508)
194 KOG3408|consensus 21.9 65 0.0014 25.4 1.8 25 128-152 55-79 (129)
195 PF14446 Prok-RING_1: Prokaryo 21.8 63 0.0014 21.5 1.4 9 384-392 7-15 (54)
196 COG1655 Uncharacterized protei 21.6 28 0.0006 30.9 -0.3 23 438-460 19-41 (267)
197 cd00065 FYVE FYVE domain; Zinc 21.1 64 0.0014 21.4 1.5 10 495-504 19-28 (57)
198 KOG1842|consensus 20.8 61 0.0013 32.0 1.7 27 2-28 16-42 (505)
199 PF06220 zf-U1: U1 zinc finger 20.2 61 0.0013 19.7 1.1 22 494-515 3-26 (38)
No 1
>KOG1074|consensus
Probab=99.96 E-value=2.7e-31 Score=260.10 Aligned_cols=236 Identities=27% Similarity=0.536 Sum_probs=175.2
Q ss_pred CCCCCchhhhccCchhHHHHHhhcCCCCccccccccccccCcccHHHHhhhcCCC----CCcccc---cCCcccCChHHH
Q psy63 283 GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSES----RNFQCT---VCDKKFATPAGL 355 (585)
Q Consensus 283 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~---~C~~~f~~~~~l 355 (585)
+-+|-+|-++..=.+.|+.|.+.|+|++||+|.+||+.|.++.+|+.||-+|... ..+.|+ +|-+.|.....|
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l 684 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL 684 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence 4689999999999999999999999999999999999999999999999998654 358899 999999999999
Q ss_pred HhhhhhhcccccchhhhhhhhccCCCCccCCCccccCCChhhHHHHHhhccC----------------CC----CccCCc
Q psy63 356 REHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTG----------------EK----KYVCQQ 415 (585)
Q Consensus 356 ~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~----------------~~----~~~C~~ 415 (585)
..|+++|......-..-. .......-+|..|.+.|.....+..++..|.+ +. +..+..
T Consensus 685 pQhIriH~~~~~s~g~~a--~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~ 762 (958)
T KOG1074|consen 685 PQHIRIHLGGQISNGGTA--AEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENS 762 (958)
T ss_pred cceEEeecCCCCCCCccc--ccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCccccc
Confidence 999999874321110000 01122335799999999888888888766622 22 466778
Q ss_pred cccccCChHHHHhhhh-----------------------hcCCCCcc-ccCccCCccCCchhhh----hH--------h-
Q psy63 416 CGASFTQWASLFYHKF-----------------------SHSETRNQ-VCSYCGKTYKNPNHLR----SH--------L- 458 (585)
Q Consensus 416 C~~~f~~~~~l~~H~~-----------------------~h~~~~~~-~C~~C~~~f~~~~~l~----~H--------~- 458 (585)
|+..+.....+..+-. ..+++++. .+.+++......-... .- .
T Consensus 763 ~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~ 842 (958)
T KOG1074|consen 763 CGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLA 842 (958)
T ss_pred cccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccccc
Confidence 8888766555443321 12344455 5666664432211110 00 0
Q ss_pred -----hhcCC------------------------CCcccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchh
Q psy63 459 -----NTHTK------------------------KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKH 509 (585)
Q Consensus 459 -----~~h~~------------------------~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~ 509 (585)
.++.+ .....|.+|++.|.+.++|..|+++|++++||.|.+|++.|+++.+
T Consensus 843 t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgn 922 (958)
T KOG1074|consen 843 TKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGN 922 (958)
T ss_pred cccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhh
Confidence 00000 0127899999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCc
Q psy63 510 LSQHHRTHKRK 520 (585)
Q Consensus 510 l~~H~~~h~~~ 520 (585)
|+.||.+|...
T Consensus 923 LKvHMgtH~w~ 933 (958)
T KOG1074|consen 923 LKVHMGTHMWV 933 (958)
T ss_pred hhhhhcccccc
Confidence 99999998753
No 2
>KOG1074|consensus
Probab=99.96 E-value=9.9e-31 Score=256.21 Aligned_cols=302 Identities=25% Similarity=0.474 Sum_probs=224.4
Q ss_pred CCCCCchhhhccCchhHHHHHhhcCCCCccccccccccccCcccHHHHhhhcCCCCC------------cccccCCcccC
Q psy63 283 GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRN------------FQCTVCDKKFA 350 (585)
Q Consensus 283 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~------------~~C~~C~~~f~ 350 (585)
..+|.+|.++|.+.+.|+.|++.|+|++||+|.+||..|.++.+|+.|...|....| +.|.+|.-.+.
T Consensus 353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~p~~~m~p~~~~e~l~~~i~st~~p 432 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKYPHVQMNPHPVQEHLQYVITSTGLP 432 (958)
T ss_pred cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccCCccccCCCCchhhhcceeeccccC
Confidence 467999999999999999999999999999999999999999999999988865542 44555555444
Q ss_pred ChHHHHhhhhhhc-------------------------------------------------------------------
Q psy63 351 TPAGLREHKRVHV------------------------------------------------------------------- 363 (585)
Q Consensus 351 ~~~~l~~H~~~h~------------------------------------------------------------------- 363 (585)
....+.-+.....
T Consensus 433 ~g~~vpp~k~~~~~~~~e~~~~~~sts~g~~~~~~~~~sv~~~~ts~~~~~~~s~~~~~~~~~i~~~s~e~e~~vs~g~~ 512 (958)
T KOG1074|consen 433 YGPSVPPEKAEEEAATVEPKLLVRSTSVGSATESLTPSSVSFGETSAPPLPAFSKFVLMKTVEIKSKSEEPEPAVSEGSA 512 (958)
T ss_pred CCCCCCCCCCcchhccccccccccccccCCCCCcccccccccccccCCCCCccccccccCCcccccccCCCCcccccccc
Confidence 4333332221000
Q ss_pred -cc--------------c------cchhhhh--------------------------h----------------------
Q psy63 364 -TN--------------R------KNMIDHQ--------------------------R---------------------- 374 (585)
Q Consensus 364 -~~--------------~------~~~~~~~--------------------------~---------------------- 374 (585)
.+ . ..+..+. .
T Consensus 513 ~~~~~~gs~l~~s~~ks~~s~~~~~~~~~~~asa~m~~~~~~~~p~g~s~~~~aq~~~l~d~~~~~~~~~~tsseS~kl~ 592 (958)
T KOG1074|consen 513 ISGVLEGSPLRMSSGKSVESLPVEADLLNHAASAGMFPPSYVSRPLGPSEDTTAQALQLVDKIPEALIEISTSSESPKLT 592 (958)
T ss_pred ccccccCCccccccccCccccchhccccchhhccccCCchhhcCCCCcchhhHHHhhhhhccChhhcceeecccCCcccc
Confidence 00 0 0000000 0
Q ss_pred -----hhccCCCCccCCCccccCCChhhHHHHHhhccCCCCccCCccccccCChHHHHhhhhhcCCCC----ccccC---
Q psy63 375 -----SVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETR----NQVCS--- 442 (585)
Q Consensus 375 -----~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~--- 442 (585)
.......|-+|-+|-+..+-++.|+.|++.|+||+||+|.+|++.|+++.+|+.|+..|.... .+.|+
T Consensus 593 slv~~~~~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ 672 (958)
T KOG1074|consen 593 SLVENSENKRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTF 672 (958)
T ss_pred ccccccccccCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchh
Confidence 000112357899999999999999999999999999999999999999999999998886553 57899
Q ss_pred ccCCccCCchhhhhHhhhcCCCC-------------cccccccccccCChhhHHHHHhhc----------------cCCC
Q psy63 443 YCGKTYKNPNHLRSHLNTHTKKR-------------LYVCETCGKEFMKLELLKSHLTTH----------------LAAR 493 (585)
Q Consensus 443 ~C~~~f~~~~~l~~H~~~h~~~~-------------~~~C~~C~~~f~~~~~L~~H~~~H----------------~~~~ 493 (585)
+|-+.|.+.-.|..|+++|.+.. .=+|..|.+.|.....+..++.-| +++.
T Consensus 673 ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~ 752 (958)
T KOG1074|consen 673 ICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEEL 752 (958)
T ss_pred hhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCccccccccccccc
Confidence 99999999999999999998421 247999999999998888888766 2222
Q ss_pred ----CccCcccccccCCchhhhhhhhhccC-----------------------ch--------------------hhhh-
Q psy63 494 ----PFICEFCSAGFKTKKHLSQHHRTHKR-----------------------KD--------------------TLEN- 525 (585)
Q Consensus 494 ----~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------------~~--------------------~l~~- 525 (585)
+..+..|+..+.....+..+--.+.. .+ .|.+
T Consensus 753 ~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~ 832 (958)
T KOG1074|consen 753 DVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQ 832 (958)
T ss_pred ccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcc
Confidence 57789999999888777766433210 00 0000
Q ss_pred --------------hhh-------hhhc----------C-----CCccccccccccccChhhHHHHHhhhcCCCcccccc
Q psy63 526 --------------HMK-------AVHE----------K-----IRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMR 569 (585)
Q Consensus 526 --------------~~~-------~~~~----------~-----~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~ 569 (585)
.+. .+-. + .-...|.+|++.|...++|.+|||+|+|+|||.|.+
T Consensus 833 ~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~f 912 (958)
T KOG1074|consen 833 ETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHF 912 (958)
T ss_pred cccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchh
Confidence 000 0000 0 012679999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhcc
Q psy63 570 MSENISAQFAVKHLQ 584 (585)
Q Consensus 570 c~~~~~~~~~~~~~~ 584 (585)
|+++|..+..|+-|.
T Consensus 913 C~~aFttrgnLKvHM 927 (958)
T KOG1074|consen 913 CEEAFTTRGNLKVHM 927 (958)
T ss_pred hhhhhhhhhhhhhhh
Confidence 999999999996553
No 3
>KOG2462|consensus
Probab=99.95 E-value=5.5e-29 Score=214.91 Aligned_cols=134 Identities=30% Similarity=0.664 Sum_probs=127.8
Q ss_pred CCCccCCCccccCCChhhHHHHHhhccC---CCCccCCccccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhh
Q psy63 380 LKPYECDTCGHGLSSKKSLDDHYRIHTG---EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRS 456 (585)
Q Consensus 380 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 456 (585)
...|+|+.||+.+.+.++|.+|.+.|-. .+.+.|++|++.|.+...|.+|+++|+ -+.+|.+|||.|..+.-|+-
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG 205 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG 205 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence 4469999999999999999999999854 577999999999999999999999997 57999999999999999999
Q ss_pred HhhhcCCCCcccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchhhhhhhh
Q psy63 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHR 515 (585)
Q Consensus 457 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~ 515 (585)
|+|+|+|||||.|+.|++.|.++++|+.||++|.+.++|+|..|+++|..++.|.+|..
T Consensus 206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999975
No 4
>KOG3608|consensus
Probab=99.95 E-value=3.6e-28 Score=214.55 Aligned_cols=267 Identities=25% Similarity=0.466 Sum_probs=185.2
Q ss_pred CCCC--CchhhhccC-chhHHHHHhhcCC----------------C------------------Ccccc--ccccccccC
Q psy63 283 GYQC--NICGRVMND-RTNLKVHMRNHTG----------------E------------------KKYIC--EVCGKGFVQ 323 (585)
Q Consensus 283 ~~~C--~~C~~~f~~-~~~l~~H~~~h~~----------------~------------------~~~~C--~~C~~~f~~ 323 (585)
.++| ..|++...+ ...|.+|.-.|-- + ..|.| ..|+..|.+
T Consensus 69 e~qC~w~~C~f~~~~~s~~l~RHvy~H~y~~~l~q~G~~al~~~~dig~c~~~f~~~~~ip~~g~~f~C~WedCe~~F~s 148 (467)
T KOG3608|consen 69 EHQCTWNSCDFRTENSSADLIRHVYFHCYHTKLKQQGKLALDLHPDIGACTAPFRLMEKIPALGQNFRCGWEDCEREFVS 148 (467)
T ss_pred ceeEEeccCCccccchHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCcCcccCCcchhhccccchhhhccChhhcCCcccC
Confidence 5666 457777766 4788888765521 0 11444 557777887
Q ss_pred cccHHHHhhhcCC------------CC-Ccccc--cCCcccCChHHHHhhhhhhcccccchhhhhhhhccCCCCccCCCc
Q psy63 324 WSSHYYHMFTHSE------------SR-NFQCT--VCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTC 388 (585)
Q Consensus 324 ~~~l~~H~~~h~~------------~~-~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C 388 (585)
...+..|+..|.. ++ .+.|. .|.+.|.++..|++|++.|. +++...|+.|
T Consensus 149 ~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs---------------~eKvvACp~C 213 (467)
T KOG3608|consen 149 IVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHS---------------NEKVVACPHC 213 (467)
T ss_pred HHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcC---------------CCeEEecchH
Confidence 7777777765531 11 24454 47777888888888877654 3455678888
Q ss_pred cccCCChhhHHHHHhhcc--CCCCccCCccccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhh-cCCCC
Q psy63 389 GHGLSSKKSLDDHYRIHT--GEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNT-HTKKR 465 (585)
Q Consensus 389 ~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~ 465 (585)
|..|.++..|..|++..+ ...+|+|..|.+.|.+...|..|+..|-. -|+|+.|+.+...++.|..|++. |..++
T Consensus 214 g~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dk 291 (467)
T KOG3608|consen 214 GELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDK 291 (467)
T ss_pred HHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCC
Confidence 888888888888876544 34578888888888888888888777754 47788888888888888888763 66677
Q ss_pred cccccccccccCChhhHHHHHhhccCCCCccCcc--cccccCCchhhhhhhhhccCchhhhhhhhhhhcCCCcccccccc
Q psy63 466 LYVCETCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCD 543 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~l~~~~~~~~~~~~~~~C~~C~ 543 (585)
||+|+.|++.|.+.+.|..|+.+|. +..|+|+. |.++|.+...|++|++.++.. .++-+|.|..|+
T Consensus 292 pfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg-----------~np~~Y~CH~Cd 359 (467)
T KOG3608|consen 292 PFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEG-----------NNPILYACHCCD 359 (467)
T ss_pred CccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccC-----------CCCCceeeecch
Confidence 8888888888888888888877776 56688877 888888888888887765522 133568888888
Q ss_pred ccccChhhHHHHHhhhcC------CCcccccccchhhhhhh
Q psy63 544 RAFFDVYNLKLHMRIHTG------EKKYLSMRMSENISAQF 578 (585)
Q Consensus 544 ~~f~~~~~l~~H~~~h~~------~k~~~c~~c~~~~~~~~ 578 (585)
+.|++-.+|..|++..++ -+.|.=..|...|....
T Consensus 360 r~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~mRLq 400 (467)
T KOG3608|consen 360 RFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFMRLQ 400 (467)
T ss_pred hhhccchhHHHHHHHhhcccCCCCCCceeeeeccCceeeee
Confidence 888888888888766554 23344445555555443
No 5
>KOG2462|consensus
Probab=99.95 E-value=2.2e-28 Score=211.14 Aligned_cols=126 Identities=33% Similarity=0.635 Sum_probs=69.9
Q ss_pred cccCccCCccCCchhhhhHhhhcCC---CCcccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchhhhhhhh
Q psy63 439 QVCSYCGKTYKNPNHLRSHLNTHTK---KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHR 515 (585)
Q Consensus 439 ~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~ 515 (585)
|+|+.||+.+.+.+.|.+|.++|.. .+.+.|++||+.|.+..+|+.|+++|+ .|++|.+||+.|.+...|+-|+|
T Consensus 131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR 208 (279)
T ss_pred eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence 4444455555445555555444432 344555555555555555555555554 44555555555555555555555
Q ss_pred hccCchhhhhhhhhhhcCCCccccccccccccChhhHHHHHhhhcCCCcccccccchhhhhhhhh
Q psy63 516 THKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENISAQFAV 580 (585)
Q Consensus 516 ~h~~~~~l~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~c~~~~~~~~~~ 580 (585)
+|+ |||||.|+.|+++|.++++|+.||++|.+.|+|.|..|+|+|+..+.|
T Consensus 209 THT--------------GEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyL 259 (279)
T KOG2462|consen 209 THT--------------GEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYL 259 (279)
T ss_pred ccc--------------CCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHH
Confidence 433 445555555666666666666666666655566666666666655555
No 6
>KOG3608|consensus
Probab=99.94 E-value=5.3e-27 Score=207.25 Aligned_cols=231 Identities=28% Similarity=0.500 Sum_probs=191.7
Q ss_pred ccC--CCCCccccChHHHHHHHHHhhhhhhhhcccccCCCCCCCCCC--chhhhccCchhHHHHHhhcCCCCcccccccc
Q psy63 243 FVC--NMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCN--ICGRVMNDRTNLKVHMRNHTGEKKYICEVCG 318 (585)
Q Consensus 243 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 318 (585)
|.| ..|+..|.+...+..|+..|.-.-+.-.........+.+.|. .|...+.+++.|++|++.|.+++...|+.||
T Consensus 135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg 214 (467)
T KOG3608|consen 135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG 214 (467)
T ss_pred hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence 556 569999999999999987775432111111222222456664 5999999999999999999999999999999
Q ss_pred ccccCcccHHHHhhhcC--CCCCcccccCCcccCChHHHHhhhhhhcccccchhhhhhhhccCCCCccCCCccccCCChh
Q psy63 319 KGFVQWSSHYYHMFTHS--ESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKK 396 (585)
Q Consensus 319 ~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~ 396 (585)
.-|.....|..|++..+ ...+|+|..|.+.|++...|..|+..|.. .|+|+.|+.+.+..+
T Consensus 215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-----------------~ykCplCdmtc~~~s 277 (467)
T KOG3608|consen 215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-----------------CYKCPLCDMTCSSAS 277 (467)
T ss_pred HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-----------------cccccccccCCCChH
Confidence 99999999999998654 56689999999999999999999988753 589999999999999
Q ss_pred hHHHHHh-hccCCCCccCCccccccCChHHHHhhhhhcCCCCccccCc--cCCccCCchhhhhHhhhcC-C--CCccccc
Q psy63 397 SLDDHYR-IHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNHLRSHLNTHT-K--KRLYVCE 470 (585)
Q Consensus 397 ~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~-~--~~~~~C~ 470 (585)
+|..|++ .|..++||+|+.|++.|.+.++|..|...|+ +..|.|.. |..+|.+...|++|++.++ | +-+|.|-
T Consensus 278 sL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH 356 (467)
T KOG3608|consen 278 SLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACH 356 (467)
T ss_pred HHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeee
Confidence 9999987 4777899999999999999999999999888 66799988 9999999999999987654 4 4569999
Q ss_pred ccccccCChhhHHHHHhhccC
Q psy63 471 TCGKEFMKLELLKSHLTTHLA 491 (585)
Q Consensus 471 ~C~~~f~~~~~L~~H~~~H~~ 491 (585)
.|++.|++-.+|.+|++.-++
T Consensus 357 ~Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 357 CCDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred cchhhhccchhHHHHHHHhhc
Confidence 999999999999999765433
No 7
>KOG3623|consensus
Probab=99.91 E-value=6.6e-25 Score=211.64 Aligned_cols=118 Identities=28% Similarity=0.554 Sum_probs=92.0
Q ss_pred cccccccCccccCHHHHHHHHhhcCC--CCCccCCCCCccccChHHHHHHHHHhhhhhhhhcccccCCCCCCCCCCchhh
Q psy63 214 KSICDVCGKEFRMKRQLKEHMAVHTT--DRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGR 291 (585)
Q Consensus 214 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~~ 291 (585)
...|+.|+..+.....|++|++..+. +..|.|..|.++|..+..|.+|+..|..................|+|..||+
T Consensus 210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK 289 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK 289 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence 35688888887777788888765433 3457888888888888888888888776544332223333345799999999
Q ss_pred hccCchhHHHHHhhcCCCCccccccccccccCcccHHHHh
Q psy63 292 VMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHM 331 (585)
Q Consensus 292 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 331 (585)
.|..+..|+.|+++|.|++||.|+.|+++|+...++..||
T Consensus 290 AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm 329 (1007)
T KOG3623|consen 290 AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM 329 (1007)
T ss_pred hhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence 9999999999999999999999999999999877777765
No 8
>KOG3623|consensus
Probab=99.91 E-value=4.4e-25 Score=212.86 Aligned_cols=93 Identities=31% Similarity=0.647 Sum_probs=74.2
Q ss_pred CCCcccccCCcccCChHHHHhhhhhhcccccchhhhhhhhccCCCCccCCCccccCCChhhHHHHHhhccCCCCccCCcc
Q psy63 337 SRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQC 416 (585)
Q Consensus 337 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 416 (585)
+..|.|.+|.++|+....|.+|+.+|....+.-+.+. .....+.|+|..||+.|..+-.|+.|+|+|.|+|||.|+.|
T Consensus 238 e~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~slt--qsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnC 315 (1007)
T KOG3623|consen 238 EPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLT--QSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNC 315 (1007)
T ss_pred CCCCcchhhhhhhhhHHHHHHHHHhhcCCCccccccc--chhhhccccccccchhhhhHHHHHhhheeecCCCCcCCccc
Confidence 4457788888888888888888888765443321111 12345679999999999999999999999999999999999
Q ss_pred ccccCChHHHHhhhh
Q psy63 417 GASFTQWASLFYHKF 431 (585)
Q Consensus 417 ~~~f~~~~~l~~H~~ 431 (585)
+++|....++..|+.
T Consensus 316 kKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 316 KKRFSHSGSYSSHMS 330 (1007)
T ss_pred ccccccCCccccccc
Confidence 999999888888864
No 9
>KOG3576|consensus
Probab=99.75 E-value=2e-19 Score=146.89 Aligned_cols=129 Identities=24% Similarity=0.451 Sum_probs=107.4
Q ss_pred CCCccccCccCCccCCchhhhhHhhhcCCCCcccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchhhhhhh
Q psy63 435 ETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHH 514 (585)
Q Consensus 435 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~ 514 (585)
+...|.|.+|++.|.-...|.+|++-|...+.|-|..||+.|.+..+|++|+++|+|.+||+|..|+++|+..-.|..|+
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCchhhhhhhhhhhcCCCccccccccccccChhhHHHHHhhhcCCCccc
Q psy63 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYL 566 (585)
Q Consensus 515 ~~h~~~~~l~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~ 566 (585)
+..++...-- .......+.|.|..||.+-.....+..|++.|+..-|+.
T Consensus 194 ~kvhgv~~~y---aykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spal 242 (267)
T KOG3576|consen 194 KKVHGVQHQY---AYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPAL 242 (267)
T ss_pred HHHcCchHHH---HHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHH
Confidence 8777632211 111223578999999999999999999999998776543
No 10
>KOG3576|consensus
Probab=99.69 E-value=8.7e-18 Score=137.37 Aligned_cols=114 Identities=28% Similarity=0.567 Sum_probs=96.6
Q ss_pred CCCccCCccccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhhcCCCCcccccccccccCChhhHHHHHh
Q psy63 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLT 487 (585)
Q Consensus 408 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~ 487 (585)
...|.|.+|++.|.-...|.+|++-|.+.+.+.|..||+.|.....|++|+++|+|.+||+|..|++.|+++-.|..|++
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence 45678888888888888888888888888888888999999888999999999999999999999999999999999987
Q ss_pred hccCC-----------CCccCcccccccCCchhhhhhhhhccCch
Q psy63 488 THLAA-----------RPFICEFCSAGFKTKKHLSQHHRTHKRKD 521 (585)
Q Consensus 488 ~H~~~-----------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 521 (585)
.-+|. +.|.|+.||+.-.....+..|++.|+...
T Consensus 195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 65553 56889999999999999999998888643
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.27 E-value=7.7e-12 Score=123.79 Aligned_cols=145 Identities=19% Similarity=0.427 Sum_probs=111.2
Q ss_pred cccccCCcccCChHHHHhhhhhhcccccchhhhhhhhccCCCCccCCC--ccccCCChhhHHHHHhhccCCCCccCCccc
Q psy63 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDT--CGHGLSSKKSLDDHYRIHTGEKKYVCQQCG 417 (585)
Q Consensus 340 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 417 (585)
-.|+.|....+ ...|..|.....- ....|+. ||..|. +..+.. .+.|+.|+
T Consensus 408 V~C~NC~~~i~-l~~l~lHe~~C~r----------------~~V~Cp~~~Cg~v~~-r~el~~---------H~~C~~Cg 460 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHEAYCSR----------------HNVVCPHDGCGIVLR-VEEAKN---------HVHCEKCG 460 (567)
T ss_pred EECCCCCCccc-hhHHHHHHhhCCC----------------cceeCCcccccceee-cccccc---------CccCCCCC
Confidence 46888888765 4556677644321 1235874 888883 333343 35899999
Q ss_pred cccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhhcCCCCcccccccccccC----------ChhhHHHHHh
Q psy63 418 ASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFM----------KLELLKSHLT 487 (585)
Q Consensus 418 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~----------~~~~L~~H~~ 487 (585)
+.|. ...|..|+..++ .++.|+ ||+.+ .+..|..|+.+|.+++++.|++|++.|. ..+.|..|+.
T Consensus 461 k~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~ 535 (567)
T PLN03086 461 QAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES 535 (567)
T ss_pred Cccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHH
Confidence 9996 678999999985 789999 99765 6789999999999999999999999995 2458999998
Q ss_pred hccCCCCccCcccccccCCchhhhhhhhhcc
Q psy63 488 THLAARPFICEFCSAGFKTKKHLSQHHRTHK 518 (585)
Q Consensus 488 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 518 (585)
.. |.+++.|..||+.+. ...|..|+...|
T Consensus 536 ~C-G~rt~~C~~Cgk~Vr-lrdm~~H~~~~h 564 (567)
T PLN03086 536 IC-GSRTAPCDSCGRSVM-LKEMDIHQIAVH 564 (567)
T ss_pred hc-CCcceEccccCCeee-ehhHHHHHHHhh
Confidence 85 999999999998885 456777876543
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.18 E-value=3.6e-11 Score=119.13 Aligned_cols=144 Identities=22% Similarity=0.495 Sum_probs=95.1
Q ss_pred ccCCCccccCCChhhHHHHHhhccCCCCccCCc--cccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhh
Q psy63 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNT 460 (585)
Q Consensus 383 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 460 (585)
..|+.|..... ...|..|...-.- ..-.|+. |+..|. +..+..| +.|++|++.|. ...|..|+.+
T Consensus 408 V~C~NC~~~i~-l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~~ 474 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHEAYCSR-HNVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMKV 474 (567)
T ss_pred EECCCCCCccc-hhHHHHHHhhCCC-cceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHHh
Confidence 46888876554 4455577643322 3345763 887773 3333333 47888888885 5678888887
Q ss_pred cCCCCcccccccccccCChhhHHHHHhhccCCCCccCcccccccCC----------chhhhhhhhhccCchhhhhhhhhh
Q psy63 461 HTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKT----------KKHLSQHHRTHKRKDTLENHMKAV 530 (585)
Q Consensus 461 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~----------~~~l~~H~~~h~~~~~l~~~~~~~ 530 (585)
++ +++.|+ ||+.+ .+..|..|+.+|.+.+|+.|.+|++.|.. ...|..|...
T Consensus 475 ~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-------------- 536 (567)
T PLN03086 475 FH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-------------- 536 (567)
T ss_pred cC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh--------------
Confidence 75 678888 88654 56788888888888888888888888742 2345555442
Q ss_pred hcCCCccccccccccccChhhHHHHHhhh
Q psy63 531 HEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559 (585)
Q Consensus 531 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 559 (585)
.+.+++.|..||+.+.. .+|..|+..-
T Consensus 537 -CG~rt~~C~~Cgk~Vrl-rdm~~H~~~~ 563 (567)
T PLN03086 537 -CGSRTAPCDSCGRSVML-KEMDIHQIAV 563 (567)
T ss_pred -cCCcceEccccCCeeee-hhHHHHHHHh
Confidence 36777888888876654 3577776543
No 13
>PHA00733 hypothetical protein
Probab=99.14 E-value=3.9e-11 Score=96.29 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=57.6
Q ss_pred CCccccCccCCccCCchhhhh------HhhhcCCCCcccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchh
Q psy63 436 TRNQVCSYCGKTYKNPNHLRS------HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKH 509 (585)
Q Consensus 436 ~~~~~C~~C~~~f~~~~~l~~------H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~ 509 (585)
.+++.|.+|...|.++..|.. |+. +.+++||.|+.|++.|.+...|..|++.| +.+|.|++|++.|.....
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s 114 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS 114 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence 344555555555554444443 333 34577888888888888888888888876 357889999999988888
Q ss_pred hhhhhhhccC
Q psy63 510 LSQHHRTHKR 519 (585)
Q Consensus 510 l~~H~~~h~~ 519 (585)
|..|+...|+
T Consensus 115 L~~H~~~~h~ 124 (128)
T PHA00733 115 TLDHVCKKHN 124 (128)
T ss_pred HHHHHHHhcC
Confidence 8888876554
No 14
>PHA00733 hypothetical protein
Probab=99.12 E-value=4.9e-11 Score=95.74 Aligned_cols=96 Identities=20% Similarity=0.332 Sum_probs=75.9
Q ss_pred chhhhhHhhhcCCCCcccccccccccCChhhHHHH--Hh---hccCCCCccCcccccccCCchhhhhhhhhccCchhhhh
Q psy63 451 PNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSH--LT---THLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLEN 525 (585)
Q Consensus 451 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H--~~---~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~l~~ 525 (585)
...|..+-..-...+++.|.+|+..|.....|..+ ++ .+.+++||.|+.|++.|.+...|..|++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~------- 97 (128)
T PHA00733 25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTE------- 97 (128)
T ss_pred HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCC-------
Confidence 34444443333335789999999999988888777 32 3356889999999999999999999998541
Q ss_pred hhhhhhcCCCccccccccccccChhhHHHHHhhhcCC
Q psy63 526 HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 562 (585)
Q Consensus 526 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 562 (585)
.+|.|++|+++|.....|..|+...++.
T Consensus 98 ---------~~~~C~~CgK~F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 98 ---------HSKVCPVCGKEFRNTDSTLDHVCKKHNI 125 (128)
T ss_pred ---------cCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence 4699999999999999999999988763
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.98 E-value=1.9e-10 Score=74.42 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=40.9
Q ss_pred ccccccccccccChhhHHHHHhhhcCCCcccccccchhhhhhhhh
Q psy63 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENISAQFAV 580 (585)
Q Consensus 536 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~c~~~~~~~~~~ 580 (585)
.|.|+.||+.|.+.++|..||++|+ +||.|..|++.|++.+.|
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 4899999999999999999999999 799999999999998877
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.94 E-value=4.5e-10 Score=72.72 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=36.0
Q ss_pred cccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchhhh
Q psy63 466 LYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLS 511 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~ 511 (585)
-|.|+.||+.|...+.|..|+++|+ +||+|..|++.|.+.+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 4788888888888888888888887 6888888888888777664
No 17
>KOG1146|consensus
Probab=98.91 E-value=1.5e-09 Score=114.48 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=65.2
Q ss_pred ccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchhhhhhhhhccC----chhhhhhhhhhhcCCCccccccc
Q psy63 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKR----KDTLENHMKAVHEKIRDFQCKVC 542 (585)
Q Consensus 467 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~----~~~l~~~~~~~~~~~~~~~C~~C 542 (585)
+.|..|++.|.....+. |+- ...+|.|..|...|.....|..|.+.-.. .+....+.- .+....+| |..|
T Consensus 1261 ~~c~~~~~~~~~~~~~~-~l~---~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l-~~~d~~~~-c~~c 1334 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLD---VTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPL-RVPDCTYH-CLAC 1334 (1406)
T ss_pred chhhhccccccCcccee-ecc---cchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcc-cCcccccc-chHH
Confidence 78999999999888877 553 35679999999999999999999843221 111111111 11223456 9999
Q ss_pred cccccChhhHHHHHhhhcCC
Q psy63 543 DRAFFDVYNLKLHMRIHTGE 562 (585)
Q Consensus 543 ~~~f~~~~~l~~H~~~h~~~ 562 (585)
...|.....|.+||+.-.++
T Consensus 1335 ~~~~~~~~alqihm~~~~~~ 1354 (1406)
T KOG1146|consen 1335 EVLLSGREALQIHMRSSAHR 1354 (1406)
T ss_pred HhhcchhHHHHHHHHHhhhc
Confidence 99999999999999875443
No 18
>KOG3993|consensus
Probab=98.80 E-value=1.8e-09 Score=99.57 Aligned_cols=179 Identities=18% Similarity=0.290 Sum_probs=98.3
Q ss_pred CccCCCccccCCChhhHHHHHhhccCCCCccCCccccccCChHHHHhhhhhcCCCCcccc---CccCCccCCchhhhhHh
Q psy63 382 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVC---SYCGKTYKNPNHLRSHL 458 (585)
Q Consensus 382 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C---~~C~~~f~~~~~l~~H~ 458 (585)
.|.|.+|...|.+...|.+|.-.--.--.|+|+.|+|.|+-.++|..|.++|.....-.= +-=.+...+....+.=.
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 489999999999999999996221122369999999999999999999999854211000 00000000000000000
Q ss_pred hh--cCCCCcccccccccccCChhhHHHHHhhccCCC-----------------CccCcccccccCCchhhhhhhhhccC
Q psy63 459 NT--HTKKRLYVCETCGKEFMKLELLKSHLTTHLAAR-----------------PFICEFCSAGFKTKKHLSQHHRTHKR 519 (585)
Q Consensus 459 ~~--h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~-----------------~~~C~~C~~~f~~~~~l~~H~~~h~~ 519 (585)
+. -..+..|.|.+|++.|.+...|+.|+.+|.... -+-|..|+-.+.....--.+...+.+
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~ 426 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG 426 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence 00 012336778888888888888888876663210 12244444333333322222222221
Q ss_pred chhhhhhh---------------hhhhcCCCccccccccccccChhhHHHHHhhhc
Q psy63 520 KDTLENHM---------------KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 560 (585)
Q Consensus 520 ~~~l~~~~---------------~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 560 (585)
...+..-- ...-.....|.|.+|..+|.+..+|.+|++.-|
T Consensus 427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H 482 (500)
T KOG3993|consen 427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH 482 (500)
T ss_pred cccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence 11110000 001112345889999999999999999987644
No 19
>KOG3993|consensus
Probab=98.76 E-value=1.9e-09 Score=99.36 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=31.5
Q ss_pred ccccccccccCChhhHHHHHhhccCCCCccCcccccccCCchhhhhhhhhcc
Q psy63 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHK 518 (585)
Q Consensus 467 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 518 (585)
-.|++|+-.+.++..--.+.+.-..+.-|.|.+|...|.+...|.+|+..-|
T Consensus 431 ~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H 482 (500)
T KOG3993|consen 431 ELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH 482 (500)
T ss_pred cCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence 3456666656555544444444444556777777777777777777765544
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.75 E-value=3.2e-09 Score=58.70 Aligned_cols=26 Identities=46% Similarity=0.643 Sum_probs=23.8
Q ss_pred hHHHHHhhhcCCCcccccccchhhhh
Q psy63 551 NLKLHMRIHTGEKKYLSMRMSENISA 576 (585)
Q Consensus 551 ~l~~H~~~h~~~k~~~c~~c~~~~~~ 576 (585)
+|++||++|+|+|||.|.+|+++|++
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 58999999999999999999999864
No 21
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.70 E-value=6.7e-09 Score=57.40 Aligned_cols=25 Identities=32% Similarity=0.909 Sum_probs=18.5
Q ss_pred hHHHHHhhccCCCCccCcccccccC
Q psy63 481 LLKSHLTTHLAARPFICEFCSAGFK 505 (585)
Q Consensus 481 ~L~~H~~~H~~~~~~~C~~C~~~f~ 505 (585)
+|..|+++|+|++||.|++|+++|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 4677777777777777777777775
No 22
>PHA00616 hypothetical protein
Probab=98.61 E-value=1.7e-08 Score=61.95 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=34.9
Q ss_pred ccccccccccccChhhHHHHHhhhcCCCcccccccchhh
Q psy63 536 DFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENI 574 (585)
Q Consensus 536 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~c~~~~ 574 (585)
||+|+.||+.|.++++|..|+++|+|++|+.|.+=.-.|
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f 39 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF 39 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence 699999999999999999999999999999988644444
No 23
>PHA00616 hypothetical protein
Probab=98.47 E-value=6.5e-08 Score=59.44 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=27.1
Q ss_pred cccccccccccCChhhHHHHHhhccCCCCccCcc
Q psy63 466 LYVCETCGKEFMKLELLKSHLTTHLAARPFICEF 499 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~ 499 (585)
||+|+.||+.|..++.|..|++.|+|++|+.|++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 5788888888888888888888888888877765
No 24
>KOG1146|consensus
Probab=98.42 E-value=1.3e-07 Score=100.23 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=51.8
Q ss_pred CCCCcccccChhHHHhhhh-hcCCCceeecccccccccCchhHHHHHHhhhcC------------------------CCc
Q psy63 76 CPDCSVIVVSYSGFKSHLD-IHNVEKEYFCHICKKVFLRNRNLVCHIKAVHEN------------------------VRE 130 (585)
Q Consensus 76 C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~------------------------~~~ 130 (585)
|..|+..+.+...+..|+. ++...+.|.|+.|++.|+....|..|++..|.. .++
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p 518 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP 518 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence 4444555555555555543 344457788888888888888888888775532 246
Q ss_pred eeCcccccccCCHHHHHHHHhh
Q psy63 131 HQCSVCGKAFADITNMKVHMRI 152 (585)
Q Consensus 131 ~~C~~C~~~f~~~~~l~~H~~~ 152 (585)
|.|..|...+.+..+|.+||..
T Consensus 519 ~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 519 YPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccceeeeeeeecchHHHHHHHH
Confidence 7778888888877777777753
No 25
>PHA00732 hypothetical protein
Probab=98.35 E-value=2.8e-07 Score=66.56 Aligned_cols=49 Identities=27% Similarity=0.473 Sum_probs=39.3
Q ss_pred CccCcccccccCCchhhhhhhhhccCchhhhhhhhhhhcCCCccccccccccccChhhHHHHHhhhcC
Q psy63 494 PFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 494 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~l~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 561 (585)
||.|+.||+.|.+...|+.|++.++ .++.|+.||++|. .|..|++++.+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H----------------~~~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNH----------------TLTKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhccc----------------CCCccCCCCCEeC---ChhhhhcccCC
Confidence 6889999999999999999987532 1357999999997 58889877665
No 26
>PHA00732 hypothetical protein
Probab=98.29 E-value=5.1e-07 Score=65.20 Aligned_cols=47 Identities=28% Similarity=0.595 Sum_probs=34.2
Q ss_pred cccccccccccCChhhHHHHHhh-ccCCCCccCcccccccCCchhhhhhhhhcc
Q psy63 466 LYVCETCGKEFMKLELLKSHLTT-HLAARPFICEFCSAGFKTKKHLSQHHRTHK 518 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 518 (585)
||.|+.|++.|.+...|+.|++. |. ++.|+.||+.|. .|..|+.+..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence 57788888888888888888774 54 357888888886 5777776544
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.26 E-value=1.5e-06 Score=58.29 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=41.9
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCC-CceecCccccccCChhhHHHHHhhcc
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGK-QRSVCDTCGRTYKTKHSLNQHMKIHS 54 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~ 54 (585)
|.||+|++. -+...|..|....|..+ +.+.||+|...+. .+|..|+..++
T Consensus 3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 899999995 56889999998888764 5799999998755 49999998765
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.10 E-value=3.4e-06 Score=56.55 Aligned_cols=50 Identities=22% Similarity=0.507 Sum_probs=30.9
Q ss_pred eecccccccccCchhHHHHHHhhhcCC-CceeCcccccccCCHHHHHHHHhhcc
Q psy63 102 YFCHICKKVFLRNRNLVCHIKAVHENV-REHQCSVCGKAFADITNMKVHMRIHT 154 (585)
Q Consensus 102 ~~C~~C~~~f~~~~~l~~H~~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~ 154 (585)
|.||+|++ ..+..+|..|+...|..+ +.+.|++|...+. .+|..|+..++
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 56777777 445566777766666653 3566777766543 36666766544
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.92 E-value=5.6e-06 Score=44.50 Aligned_cols=23 Identities=43% Similarity=0.934 Sum_probs=21.7
Q ss_pred cccccccccccChhhHHHHHhhh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIH 559 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h 559 (585)
|.|+.|++.|.+..+|..||++|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 68999999999999999999985
No 30
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.76 E-value=1.4e-05 Score=42.86 Aligned_cols=22 Identities=41% Similarity=0.821 Sum_probs=11.3
Q ss_pred ccccccccccCChhhHHHHHhh
Q psy63 467 YVCETCGKEFMKLELLKSHLTT 488 (585)
Q Consensus 467 ~~C~~C~~~f~~~~~L~~H~~~ 488 (585)
|+|+.|++.|.++..|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 3455555555555555555544
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.63 E-value=3.1e-05 Score=42.09 Aligned_cols=24 Identities=42% Similarity=0.915 Sum_probs=20.6
Q ss_pred cccccccccccChhhHHHHHhhhc
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIHT 560 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h~ 560 (585)
|.|++|++.|.+..+|+.|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999999875
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.54 E-value=4.4e-05 Score=42.82 Aligned_cols=26 Identities=31% Similarity=0.700 Sum_probs=24.1
Q ss_pred ccccccccccccChhhHHHHHhhhcC
Q psy63 536 DFQCKVCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 536 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 561 (585)
||.|..|++.|.+..+|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 68999999999999999999998864
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.52 E-value=4.5e-05 Score=59.62 Aligned_cols=25 Identities=32% Similarity=0.684 Sum_probs=22.0
Q ss_pred ccccccccccccChhhHHHHHhhhc
Q psy63 536 DFQCKVCDRAFFDVYNLKLHMRIHT 560 (585)
Q Consensus 536 ~~~C~~C~~~f~~~~~l~~H~~~h~ 560 (585)
.+.|.+|++.|.+...|..||+.+.
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 5999999999999999999999753
No 34
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.50 E-value=3e-05 Score=69.37 Aligned_cols=66 Identities=23% Similarity=0.577 Sum_probs=44.1
Q ss_pred CCCCccCcc--cccccCCchhhhhhhhhccCchh-----hhhhhhhhhcCCCccccccccccccChhhHHHHH
Q psy63 491 AARPFICEF--CSAGFKTKKHLSQHHRTHKRKDT-----LENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM 556 (585)
Q Consensus 491 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~-----l~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~ 556 (585)
+++||+|++ |++.|++...|+-|+.--|...- -...+.......|||+|++|++++.....|+-|.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 457777766 77777777777777653331100 0111222334679999999999999999999884
No 35
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.38 E-value=0.00011 Score=39.89 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=10.4
Q ss_pred CCCCccccccCCHHHHHHHHHH
Q psy63 2 YACEECGKSFKTKIQLCAHKEL 23 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~ 23 (585)
|.|++|++.|.+...|..|+..
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 3455555555555555555543
No 36
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.38 E-value=0.0001 Score=46.33 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=25.0
Q ss_pred cCCCccccccccccccChhhHHHHHhhhcCCCc
Q psy63 532 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564 (585)
Q Consensus 532 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~ 564 (585)
..+.|-.|++|+..+.+..+|++||.++|+.||
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 456789999999999999999999999999987
No 37
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.35 E-value=0.00012 Score=57.25 Aligned_cols=73 Identities=19% Similarity=0.468 Sum_probs=19.7
Q ss_pred eccccCCCCCChHHHHHHHHhhcCCCCcccccccCccccCHHHHHHHHhhcCCCCCccCCCCCccccChHHHHHHHHHh
Q psy63 187 VCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265 (585)
Q Consensus 187 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 265 (585)
+|.+|+..|.+...|..|+...|....+ ....+.....+..++... ....+.|..|+..|.+...|..|++.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccc-----cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 4778888888888888888777764332 111222333444443322 222688889988888888888888764
No 38
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.31 E-value=0.00013 Score=40.94 Aligned_cols=23 Identities=39% Similarity=0.946 Sum_probs=11.2
Q ss_pred ccccccccccCChhhHHHHHhhc
Q psy63 467 YVCETCGKEFMKLELLKSHLTTH 489 (585)
Q Consensus 467 ~~C~~C~~~f~~~~~L~~H~~~H 489 (585)
|.|..|++.|.+..+|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 44445555555555555554443
No 39
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=97.02 E-value=0.00039 Score=37.60 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.0
Q ss_pred cccccccccccChhhHHHHHhhhcC
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h~~ 561 (585)
|+|+.|+.... ..+|.+|+++|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 78999999998 9999999999875
No 40
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.99 E-value=0.00059 Score=43.01 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHhhhcCCCceeCcccccccCCHHHHHHHHhhccCCCC
Q psy63 118 VCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 158 (585)
Q Consensus 118 ~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 158 (585)
..+.+.....+.|-.|++|+..+....+|++|+.+.++.+|
T Consensus 12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 44444455566777888888888888888888877776654
No 41
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.92 E-value=0.00068 Score=37.43 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=22.6
Q ss_pred cccccccccccChhhHHHHHhhhcC
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h~~ 561 (585)
|.|+.|+++|.+...|..|++.|..
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~~ 25 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHXX 25 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhcc
Confidence 5799999999999999999997753
No 42
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.90 E-value=0.00037 Score=62.59 Aligned_cols=69 Identities=23% Similarity=0.433 Sum_probs=40.5
Q ss_pred CCceecCc--cccccCChhhHHHHHhh-ccCccCccccccccccCCCccccCCCCcccccChhHHHhhhhhcCCCceeec
Q psy63 28 KQRSVCDT--CGRTYKTKHSLNQHMKI-HSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFC 104 (585)
Q Consensus 28 ~~~~~C~~--C~~~f~~~~~l~~H~~~-h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C 104 (585)
++||.|++ |+|.|.+...|+-|+.- |.......+. +-..|...-..+|||+|
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p-------------------------~p~~~~~F~~~~KPYrC 401 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP-------------------------SPEKMNIFSAKDKPYRC 401 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCC-------------------------CccccccccccCCceec
Confidence 47888876 88888888888888742 3211111110 00111111244567777
Q ss_pred ccccccccCchhHHHHH
Q psy63 105 HICKKVFLRNRNLVCHI 121 (585)
Q Consensus 105 ~~C~~~f~~~~~l~~H~ 121 (585)
++|++.++....|..|.
T Consensus 402 evC~KRYKNlNGLKYHr 418 (423)
T COG5189 402 EVCDKRYKNLNGLKYHR 418 (423)
T ss_pred cccchhhccCccceecc
Confidence 77777777777777774
No 43
>KOG2231|consensus
Probab=96.82 E-value=0.002 Score=65.72 Aligned_cols=105 Identities=24% Similarity=0.437 Sum_probs=56.2
Q ss_pred cCCCccccCCChhhHHHHHhhccCCCCccCCccccc---------cCChHHHHhhhhhcCCCCccccCccCCccCCchhh
Q psy63 384 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGAS---------FTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHL 454 (585)
Q Consensus 384 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~---------f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 454 (585)
.|..| -.|.+...|+.|+..-+ +.+.|.+|-.. ..+...|..|+..--. +++.+
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~--------d~~s~------ 179 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP--------DDESC------ 179 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehHHHHHHHHhcCCC--------ccccc------
Confidence 68888 78889999999985433 34566665322 1233444555433211 11111
Q ss_pred hhHhhhcCCCCcccccccccccCChhhHHHHHhhccCCCCccCcccc------cccCCchhhhhhhhhcc
Q psy63 455 RSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCS------AGFKTKKHLSQHHRTHK 518 (585)
Q Consensus 455 ~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~------~~f~~~~~l~~H~~~h~ 518 (585)
.| --.|..|...|.....|..|++.++ |.|-+|+ ..|..-..|..|.+..|
T Consensus 180 -------rG--hp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 180 -------RG--HPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred -------cC--CccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence 11 1246666666666666666665543 4455542 34555566666666544
No 44
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.59 E-value=0.0017 Score=35.76 Aligned_cols=22 Identities=45% Similarity=0.839 Sum_probs=10.4
Q ss_pred cccccccccCChhhHHHHHhhc
Q psy63 468 VCETCGKEFMKLELLKSHLTTH 489 (585)
Q Consensus 468 ~C~~C~~~f~~~~~L~~H~~~H 489 (585)
.|+.|++.|.+...|..|++.|
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHHh
Confidence 4444444444444444444433
No 45
>PRK04860 hypothetical protein; Provisional
Probab=96.54 E-value=0.0011 Score=55.62 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=36.5
Q ss_pred CccccccccccccChhhHHHHHhhhcCCCcccccccchhhhhhhh
Q psy63 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENISAQFA 579 (585)
Q Consensus 535 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~c~~~~~~~~~ 579 (585)
-+|.|. |+. ....+++|.++|.|++||.|..|+..|....+
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~~ 158 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKGE 158 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEecc
Confidence 369998 997 77889999999999999999999999876654
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.41 E-value=0.0019 Score=34.86 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=8.7
Q ss_pred ccccccccccCChhhHHHHHhh
Q psy63 467 YVCETCGKEFMKLELLKSHLTT 488 (585)
Q Consensus 467 ~~C~~C~~~f~~~~~L~~H~~~ 488 (585)
|+|+.|++... ...|.+|++.
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~ 21 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKR 21 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHh
Confidence 34444444444 4444444444
No 47
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.37 E-value=0.002 Score=35.22 Aligned_cols=23 Identities=30% Similarity=0.834 Sum_probs=21.1
Q ss_pred cccccccccccChhhHHHHHhhh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIH 559 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h 559 (585)
|.|++|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 67999999999999999999865
No 48
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.31 E-value=0.0023 Score=34.92 Aligned_cols=22 Identities=32% Similarity=0.845 Sum_probs=15.9
Q ss_pred eecCccccccCChhhHHHHHhh
Q psy63 31 SVCDTCGRTYKTKHSLNQHMKI 52 (585)
Q Consensus 31 ~~C~~C~~~f~~~~~l~~H~~~ 52 (585)
|.|..|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 5677777777777777777754
No 49
>PRK04860 hypothetical protein; Provisional
Probab=96.24 E-value=0.0023 Score=53.67 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=27.8
Q ss_pred cccccccccccCChhhHHHHHhhccCCCCccCcccccccCCch
Q psy63 466 LYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKK 508 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 508 (585)
+|.|. |+. ....+++|.++|+++++|.|..|+..|....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 67776 776 6666777777777777777777777765443
No 50
>KOG2231|consensus
Probab=96.02 E-value=0.017 Score=59.22 Aligned_cols=96 Identities=21% Similarity=0.372 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHhcCCCCceecCcccc---------ccCChhhHHHHHhhccCccCccccccccccCCCccccCCCCcccc
Q psy63 13 TKIQLCAHKELVHEGKQRSVCDTCGR---------TYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIV 83 (585)
Q Consensus 13 ~~~~L~~H~~~~h~~~~~~~C~~C~~---------~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f 83 (585)
+...|..|+...|. .+.|.+|-. ..-++..|+.|+..--. .+.+-...-.|..|...|
T Consensus 126 s~~~Lk~H~~~~H~---~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~----------d~~s~rGhp~C~~C~~~f 192 (669)
T KOG2231|consen 126 SVENLKNHMRDQHK---LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP----------DDESCRGHPLCKFCHERF 192 (669)
T ss_pred HHHHHHHHHHHhhh---hhccccccccceeeeeeeehehHHHHHHHHhcCCC----------ccccccCCccchhhhhhh
Confidence 66777777765553 345555532 12345666666643111 000111123466777777
Q ss_pred cChhHHHhhhhhcCCCceeecccc------cccccCchhHHHHHHhhh
Q psy63 84 VSYSGFKSHLDIHNVEKEYFCHIC------KKVFLRNRNLVCHIKAVH 125 (585)
Q Consensus 84 ~~~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~~h 125 (585)
-....|..|++.++ |.|..| +.-|.....|..|.+..|
T Consensus 193 ld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 193 LDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred ccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence 77777777766554 345444 344556666766666555
No 51
>KOG2482|consensus
Probab=95.88 E-value=0.012 Score=53.91 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCCCceecCccccccC-ChhhHHHHHhh-ccC-ccCcccccccccc-----CCCccccCCCCcccccCh
Q psy63 15 IQLCAHKELVHEGKQRSVCDTCGRTYK-TKHSLNQHMKI-HSD-VRGKKNAIHVNNI-----NKKVSYKCPDCSVIVVSY 86 (585)
Q Consensus 15 ~~L~~H~~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~-h~~-~~~~~~~~~~~~~-----~~~~~~~C~~C~~~f~~~ 86 (585)
..|.++++..-......+|-+|...+. .++....|+-. |.= .....|.+.++.. .+-..+.|-.|.++|..+
T Consensus 129 eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdk 208 (423)
T KOG2482|consen 129 EALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDK 208 (423)
T ss_pred HHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCc
Confidence 346666553322333567999988775 67778888754 432 2222233333221 112347899999999999
Q ss_pred hHHHhhhhhcC--CCce----ee-cccccccccCchhHHHHHHh------hhc------------CCC--ceeCcccccc
Q psy63 87 SGFKSHLDIHN--VEKE----YF-CHICKKVFLRNRNLVCHIKA------VHE------------NVR--EHQCSVCGKA 139 (585)
Q Consensus 87 ~~l~~H~~~h~--~~~~----~~-C~~C~~~f~~~~~l~~H~~~------~h~------------~~~--~~~C~~C~~~ 139 (585)
..|+.||+... ...| |- =-+=++.-..++....|... .+. +.. ...|-.|...
T Consensus 209 ntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~ 288 (423)
T KOG2482|consen 209 NTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNF 288 (423)
T ss_pred HHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccc
Confidence 99999997532 1111 00 00001111111111111110 000 011 2578888888
Q ss_pred cCCHHHHHHHHhhccC---------------------------CCCccCCCcchhhhccccccccccccc
Q psy63 140 FADITNMKVHMRIHTG---------------------------EKKYVCETCGASFALWGSLNVHSYSHT 182 (585)
Q Consensus 140 f~~~~~l~~H~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~h~ 182 (585)
..+...|..||++-+. ...-.|-.|.-.|.....|..||..+.
T Consensus 289 ~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k 358 (423)
T KOG2482|consen 289 YENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDK 358 (423)
T ss_pred hhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccc
Confidence 8888888888876432 122468889999999999999987653
No 52
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.76 E-value=0.015 Score=53.25 Aligned_cols=130 Identities=21% Similarity=0.419 Sum_probs=75.0
Q ss_pred CCCCc--cccccCCHHHHHHHHHHhcCCCCceecCccc---cccC------ChhhHHHHHhhccCccCccccccccccCC
Q psy63 2 YACEE--CGKSFKTKIQLCAHKELVHEGKQRSVCDTCG---RTYK------TKHSLNQHMKIHSDVRGKKNAIHVNNINK 70 (585)
Q Consensus 2 y~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~---~~f~------~~~~l~~H~~~h~~~~~~~~~~~~~~~~~ 70 (585)
|.||. |.........|..|.+..|. .+.|.+|- +.|. ++..|+.|...=..+. .-
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~---~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~-----------GF 217 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHG---FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEE-----------GF 217 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcC---cEEhHhhhcCcccCccceeeeecccccccccCCcccc-----------Cc
Confidence 55655 66666667777778765442 46677763 2332 3344555532111100 00
Q ss_pred CccccCCCCcccccChhHHHhhhhhcCCCceeeccccccc-------ccCchhHHHHHHhhhcCCCceeCcc--cc----
Q psy63 71 KVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKV-------FLRNRNLVCHIKAVHENVREHQCSV--CG---- 137 (585)
Q Consensus 71 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~-------f~~~~~l~~H~~~~h~~~~~~~C~~--C~---- 137 (585)
...-.|..|...|-+-..|..|++..+. .|-+|+++ |.+..+|..|.+..| |.|.+ |-
T Consensus 218 KGHP~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~ 288 (493)
T COG5236 218 KGHPLCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKC 288 (493)
T ss_pred CCCchhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcE
Confidence 1123577788778777788888776553 36677654 677777777766544 44422 31
Q ss_pred cccCCHHHHHHHHhhcc
Q psy63 138 KAFADITNMKVHMRIHT 154 (585)
Q Consensus 138 ~~f~~~~~l~~H~~~h~ 154 (585)
.+|.....|..|+..-+
T Consensus 289 ~vf~~~~el~~h~~~~h 305 (493)
T COG5236 289 YVFPYHTELLEHLTRFH 305 (493)
T ss_pred EEeccHHHHHHHHHHHh
Confidence 46777777777775543
No 53
>KOG2785|consensus
Probab=95.76 E-value=0.025 Score=53.07 Aligned_cols=51 Identities=20% Similarity=0.537 Sum_probs=42.3
Q ss_pred CCCCccccccCCHHHHHHHHHHh------------------------------------cCCCCceecCccccccCChhh
Q psy63 2 YACEECGKSFKTKIQLCAHKELV------------------------------------HEGKQRSVCDTCGRTYKTKHS 45 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~------------------------------------h~~~~~~~C~~C~~~f~~~~~ 45 (585)
|+|..|...|.+...-+.|++.. -..+.++.|..|.+.|.+...
T Consensus 4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a 83 (390)
T KOG2785|consen 4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA 83 (390)
T ss_pred ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence 78999999999998888897531 123356899999999999999
Q ss_pred HHHHHhh
Q psy63 46 LNQHMKI 52 (585)
Q Consensus 46 l~~H~~~ 52 (585)
...|++.
T Consensus 84 ~~~hl~S 90 (390)
T KOG2785|consen 84 HENHLKS 90 (390)
T ss_pred HHHHHHH
Confidence 9999865
No 54
>KOG2785|consensus
Probab=95.65 E-value=0.019 Score=53.78 Aligned_cols=177 Identities=19% Similarity=0.319 Sum_probs=96.8
Q ss_pred ceeccccCCCCCChHHHHHHHHhh-cCCC---Ccccc-cccCccccCHHHHHHH---HhhcCCCCCccCCCCCccccChH
Q psy63 185 QFVCSYCGNTYKNPKALTSHIRNS-HTIH---QKSIC-DVCGKEFRMKRQLKEH---MAVHTTDRPFVCNMCPSTFKLKK 256 (585)
Q Consensus 185 ~~~C~~C~~~f~~~~~l~~H~~~~-h~~~---~~~~C-~~C~~~f~~~~~l~~H---~~~h~~~~~~~C~~C~~~f~~~~ 256 (585)
.|.|.-|...|.+....+.|.++. |.-. +.+.= ++=...|..+..-..- ...-...-++.|..|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 578999999999999888887642 2100 00000 0001111111110000 00123445688888888888888
Q ss_pred HHHHHHHHhhhhhhhhc--c--cc-------cC------CCCCCCCCCchhhhccCchhHHHHHhh------------cC
Q psy63 257 HLRQHYKVHLKMENHLN--R--HT-------NI------HTGPGYQCNICGRVMNDRTNLKVHMRN------------HT 307 (585)
Q Consensus 257 ~l~~H~~~h~~~~~~~~--~--~~-------~~------~~~~~~~C~~C~~~f~~~~~l~~H~~~------------h~ 307 (585)
....|++.....+...+ + .. .+ ..+.+=.+..+.....+......+... ..
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~ 162 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED 162 (390)
T ss_pred hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence 88888764322111000 0 00 00 000010133344444433333222211 11
Q ss_pred CCCccccccccccccCcccHHHHhhhcCCC-----------------------CCcccccCC---cccCChHHHHhhhhh
Q psy63 308 GEKKYICEVCGKGFVQWSSHYYHMFTHSES-----------------------RNFQCTVCD---KKFATPAGLREHKRV 361 (585)
Q Consensus 308 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~ 361 (585)
...|-.|-.|+..+.+...-..||..+++- ..+.|-.|+ +.|.+....+.||..
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 123567888999999888888898877652 247788898 999999999999864
No 55
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.64 E-value=0.0069 Score=62.25 Aligned_cols=155 Identities=23% Similarity=0.292 Sum_probs=73.5
Q ss_pred CccCCccccccCChHHHHhhhh--hcCCC--CccccC--ccCCccCCchhhhhHhhhcCCCCcccccc--cccccCChhh
Q psy63 410 KYVCQQCGASFTQWASLFYHKF--SHSET--RNQVCS--YCGKTYKNPNHLRSHLNTHTKKRLYVCET--CGKEFMKLEL 481 (585)
Q Consensus 410 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~ 481 (585)
++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|...|.+..++.+.. +...+.....
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence 3444444444444444444444 44444 455555 45555555555555555555544444432 2222222211
Q ss_pred H-----HHHHhhccCCCCccCcc--cccccCCchhhhhhhhhccCchhhhhhhhhhhcCCCccccccccccccChhhHHH
Q psy63 482 L-----KSHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 554 (585)
Q Consensus 482 L-----~~H~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~l~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~ 554 (585)
- ......-.....+.+.. |...+.....+..|...+-. .....+.+..|...|.....+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 436 (467)
T COG5048 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS------------FRPYNCKNPPCSKSFNRHYNLIP 436 (467)
T ss_pred CCCccchhhccCccCCccccccccchhhhhccccccccccccccc------------cCCcCCCCCcchhhccCcccccc
Confidence 0 00011111122222322 44444444444444433321 11234667777777888788888
Q ss_pred HHhhhcCCCcccccccchhhhh
Q psy63 555 HMRIHTGEKKYLSMRMSENISA 576 (585)
Q Consensus 555 H~~~h~~~k~~~c~~c~~~~~~ 576 (585)
|++.|....+..|...+.....
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~ 458 (467)
T COG5048 437 HKKIHTNHAPLLCSILKSFRRD 458 (467)
T ss_pred cccccccCCceeeccccccchh
Confidence 8877777777666655544443
No 56
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.57 E-value=0.0036 Score=34.88 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=20.5
Q ss_pred cccccccccccChhhHHHHHhh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRI 558 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~ 558 (585)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999875
No 57
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.48 E-value=0.0048 Score=34.38 Aligned_cols=22 Identities=36% Similarity=0.815 Sum_probs=16.1
Q ss_pred eecCccccccCChhhHHHHHhh
Q psy63 31 SVCDTCGRTYKTKHSLNQHMKI 52 (585)
Q Consensus 31 ~~C~~C~~~f~~~~~l~~H~~~ 52 (585)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5677777777777777777653
No 58
>KOG2482|consensus
Probab=95.15 E-value=0.04 Score=50.56 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=39.9
Q ss_pred CCCCchhhhccCchhHHHHHhhcCCCCccc-cccccccccCcccHHHHhhhcCCCCCcccccCCcccCChHHHHhhhhhh
Q psy63 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYI-CEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362 (585)
Q Consensus 284 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 362 (585)
..|-.|.....+...|..||...+.-...+ =..=+-.|-+.-.+..=.+ .....-.|-.|.-.|-.+.+|..|+..+
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiR--kq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIR--KQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHH--HHhhccccccccccccCcchhhhhcccc
Confidence 578888888888888888887644210000 0000000111111110000 1122345778888888888888887543
No 59
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.83 E-value=0.025 Score=51.84 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=14.2
Q ss_pred CCCCChHHHHHHHHhhcCC
Q psy63 193 NTYKNPKALTSHIRNSHTI 211 (585)
Q Consensus 193 ~~f~~~~~l~~H~~~~h~~ 211 (585)
.+|+....|..|+...|..
T Consensus 289 ~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 289 YVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred EEeccHHHHHHHHHHHhhc
Confidence 3678888888888777753
No 60
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.25 E-value=0.099 Score=40.32 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=44.4
Q ss_pred CccCCCccccCCChhhHHHHHhhccCCCCccCCccccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhhc
Q psy63 382 PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTH 461 (585)
Q Consensus 382 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 461 (585)
|..|+.||.+..+...|.+-..-=-..++|. .. .+ -.......|--|+..|........= .-
T Consensus 15 P~~CpiCgLtLVss~HLARSyHHLfPl~~f~---------ev-~~------~~~~~~~~C~~C~~~f~~~~~~~~~--~~ 76 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARSYHHLFPLKAFQ---------EI-PL------EEYNGSRFCFGCQGPFPKPPVSPFD--EL 76 (112)
T ss_pred CCcCCcCCCEEeccchHHHhhhccCCCcccc---------cc-cc------cccCCCCcccCcCCCCCCccccccc--cc
Confidence 6788888888888877776432111112221 00 00 0011112366666666543211100 01
Q ss_pred CCCCcccccccccccCChhhHHHHHhhc
Q psy63 462 TKKRLYVCETCGKEFMKLELLKSHLTTH 489 (585)
Q Consensus 462 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H 489 (585)
.....|+|+.|...|-..-+.-.|...|
T Consensus 77 ~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 77 KDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ccccceeCCCCCCccccccchhhhhhcc
Confidence 1233577777777777666666666655
No 61
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.11 E-value=0.053 Score=29.42 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=13.0
Q ss_pred CCCCccccccCCHHHHHHHHH
Q psy63 2 YACEECGKSFKTKIQLCAHKE 22 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~ 22 (585)
..|+.||+.| ..+.|..|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 4577777777 5666666654
No 62
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.51 E-value=0.031 Score=57.38 Aligned_cols=139 Identities=22% Similarity=0.377 Sum_probs=106.9
Q ss_pred CCccCCCccccCCChhhHHHHHh--hccCC--CCccCC--ccccccCChHHHHhhhhhcCCCCccccCc--cCCccCCch
Q psy63 381 KPYECDTCGHGLSSKKSLDDHYR--IHTGE--KKYVCQ--QCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPN 452 (585)
Q Consensus 381 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~ 452 (585)
.++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|...|.+..+..+.. +...+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 47899999999999999999999 89999 999999 89999999999999999999988877765 333333222
Q ss_pred hhhhH-----hhhcCCCCcccc--cccccccCChhhHHHHHhhccCCC--CccCcccccccCCchhhhhhhhhccC
Q psy63 453 HLRSH-----LNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAAR--PFICEFCSAGFKTKKHLSQHHRTHKR 519 (585)
Q Consensus 453 ~l~~H-----~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~ 519 (585)
.-..+ ...-.....+.+ ..|...+.....+..|...|...+ .+.+..|...|.....+..|++.+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN 443 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence 21111 111122334444 347778888888888888887766 57788899999999999999887653
No 63
>KOG2893|consensus
Probab=93.50 E-value=0.024 Score=49.04 Aligned_cols=49 Identities=33% Similarity=0.879 Sum_probs=41.5
Q ss_pred CCccCcccccccCCchhhhhhhhhccCchhhhhhhhhhhcCCCccccccccccccChhhHHHH-Hhhhc
Q psy63 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLH-MRIHT 560 (585)
Q Consensus 493 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~l~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~ 560 (585)
+| .|-+|++.|.....|.+|++. |-|+|.+|-+...+--.|.+| |++|.
T Consensus 10 kp-wcwycnrefddekiliqhqka------------------khfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 10 KP-WCWYCNREFDDEKILIQHQKA------------------KHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred Cc-eeeecccccchhhhhhhhhhh------------------ccceeeeehhhhccCCCceeehhhhhh
Confidence 44 499999999999999999875 449999999999999999988 55554
No 64
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.49 E-value=0.056 Score=29.30 Aligned_cols=21 Identities=33% Similarity=0.770 Sum_probs=17.5
Q ss_pred cccccccccccChhhHHHHHhh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRI 558 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~ 558 (585)
..|+.||++| ....|.+|+++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4699999999 67779999864
No 65
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.07 E-value=0.086 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.642 Sum_probs=19.8
Q ss_pred CccCcccccccCCchhhhhhhhh
Q psy63 494 PFICEFCSAGFKTKKHLSQHHRT 516 (585)
Q Consensus 494 ~~~C~~C~~~f~~~~~l~~H~~~ 516 (585)
+|.|++|+..|.....+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999988899999864
No 66
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.49 E-value=0.57 Score=36.26 Aligned_cols=99 Identities=21% Similarity=0.317 Sum_probs=50.7
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCChhhHHHHHhhccCccCccccccccccCCCccccCCCCcc
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSV 81 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 81 (585)
|.||.|+... -+.|-.|+.|+.+..+...|.+-. |+- -+..+-..+..........|.-|..
T Consensus 2 Y~CPrC~skv---------------C~LP~~CpiCgLtLVss~HLARSy--HHL-fPl~~f~ev~~~~~~~~~~C~~C~~ 63 (112)
T TIGR00622 2 YFCPQCRAKV---------------CELPVECPICGLTLILSTHLARSY--HHL-FPLKAFQEIPLEEYNGSRFCFGCQG 63 (112)
T ss_pred ccCCCCCCCc---------------cCCCCcCCcCCCEEeccchHHHhh--hcc-CCCcccccccccccCCCCcccCcCC
Confidence 7788887543 246789999999998888877642 221 0111111111000111234777777
Q ss_pred cccChhHHHhhhhhcCCCceeecccccccccCchhHHHH
Q psy63 82 IVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCH 120 (585)
Q Consensus 82 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 120 (585)
.|....... ...-.....|.|+.|...|--.-++-.|
T Consensus 64 ~f~~~~~~~--~~~~~~~~~y~C~~C~~~FC~dCD~fiH 100 (112)
T TIGR00622 64 PFPKPPVSP--FDELKDSHRYVCAVCKNVFCVDCDVFVH 100 (112)
T ss_pred CCCCccccc--ccccccccceeCCCCCCccccccchhhh
Confidence 766432111 0001122346666666666666555555
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.46 E-value=0.16 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.7
Q ss_pred ceecCccccccCChhhHHHHHhh
Q psy63 30 RSVCDTCGRTYKTKHSLNQHMKI 52 (585)
Q Consensus 30 ~~~C~~C~~~f~~~~~l~~H~~~ 52 (585)
+|.|.+|++.|.+...+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999998899999864
No 68
>KOG4173|consensus
Probab=90.80 E-value=0.15 Score=43.33 Aligned_cols=78 Identities=23% Similarity=0.454 Sum_probs=58.7
Q ss_pred ccccCCC--CcccccChhHHHhhhhhcCCCceeecccccccccCchhHHHHHHhhhc---------CCCceeC--ccccc
Q psy63 72 VSYKCPD--CSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHE---------NVREHQC--SVCGK 138 (585)
Q Consensus 72 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~---------~~~~~~C--~~C~~ 138 (585)
..+.|+. |...|.+...+..|...-++. .|..|.+.|.+...|..|+...|. +..-|+| ..|+.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 3466764 888899888888888665543 599999999999999999877663 3445777 45888
Q ss_pred ccCCHHHHHHHHhh
Q psy63 139 AFADITNMKVHMRI 152 (585)
Q Consensus 139 ~f~~~~~l~~H~~~ 152 (585)
.|.+...-..||-.
T Consensus 155 KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIR 168 (253)
T ss_pred hhhhhhhhhhHHHH
Confidence 88887777777744
No 69
>KOG2893|consensus
Probab=90.58 E-value=0.086 Score=45.71 Aligned_cols=47 Identities=26% Similarity=0.452 Sum_probs=32.1
Q ss_pred CCCCcccccChhHHHhhhhhcCCCceeecccccccccCchhHHHHHHhhhc
Q psy63 76 CPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHE 126 (585)
Q Consensus 76 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~ 126 (585)
|-+|++.|.....|.+|++.. -|+|.+|.+...+--.|..|...+|.
T Consensus 13 cwycnrefddekiliqhqkak----hfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehhhhhh
Confidence 677777777777777776543 36777777777776777777666654
No 70
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=90.14 E-value=0.18 Score=29.54 Aligned_cols=10 Identities=40% Similarity=1.301 Sum_probs=5.0
Q ss_pred CCccCccccc
Q psy63 493 RPFICEFCSA 502 (585)
Q Consensus 493 ~~~~C~~C~~ 502 (585)
.|+.|++||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4455555544
No 71
>KOG4173|consensus
Probab=88.77 E-value=0.16 Score=43.13 Aligned_cols=74 Identities=24% Similarity=0.567 Sum_probs=39.3
Q ss_pred CccCCc--cccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhh-c---------CCCCcccc--cccccc
Q psy63 410 KYVCQQ--CGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNT-H---------TKKRLYVC--ETCGKE 475 (585)
Q Consensus 410 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C--~~C~~~ 475 (585)
.|.|++ |...|.+......|...-++. .|.+|.+.|.+..-|..|+.. | .|...|+| ..|+..
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K 155 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK 155 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence 355654 555666555555554332222 366666666666666666532 1 23445555 345666
Q ss_pred cCChhhHHHHH
Q psy63 476 FMKLELLKSHL 486 (585)
Q Consensus 476 f~~~~~L~~H~ 486 (585)
|.+...-+.|+
T Consensus 156 FkT~r~RkdH~ 166 (253)
T KOG4173|consen 156 FKTSRDRKDHM 166 (253)
T ss_pred hhhhhhhhhHH
Confidence 66555555553
No 72
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=88.20 E-value=0.21 Score=32.24 Aligned_cols=25 Identities=16% Similarity=0.569 Sum_probs=12.9
Q ss_pred CCccccCCCCcccccChhHHHhhhh
Q psy63 70 KKVSYKCPDCSVIVVSYSGFKSHLD 94 (585)
Q Consensus 70 ~~~~~~C~~C~~~f~~~~~l~~H~~ 94 (585)
++..++||.|+..|....++.+|..
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhh
Confidence 3444555555555555555555544
No 73
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=87.65 E-value=0.69 Score=36.41 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=24.2
Q ss_pred cccc----ccccccccChhhHHHHHhhhcC
Q psy63 536 DFQC----KVCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 536 ~~~C----~~C~~~f~~~~~l~~H~~~h~~ 561 (585)
.|.| ..|+..+.+...|.+|++.+||
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 3899 9999999999999999999886
No 74
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=86.34 E-value=1.4 Score=34.69 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.8
Q ss_pred eeC----cccccccCCHHHHHHHHhhccC
Q psy63 131 HQC----SVCGKAFADITNMKVHMRIHTG 155 (585)
Q Consensus 131 ~~C----~~C~~~f~~~~~l~~H~~~h~~ 155 (585)
|.| +.|++.+.+...|..|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 788 8888888888888888887654
No 75
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=85.18 E-value=0.48 Score=30.65 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.4
Q ss_pred CCCceeecccccccccCchhHHHHHHhhhc
Q psy63 97 NVEKEYFCHICKKVFLRNRNLVCHIKAVHE 126 (585)
Q Consensus 97 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~ 126 (585)
.+|..+.||-|+..|....+..+|+...|.
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 455667777777777777777777766663
No 76
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.77 E-value=0.37 Score=43.16 Aligned_cols=54 Identities=28% Similarity=0.503 Sum_probs=36.6
Q ss_pred CCCccCcccccccCCchhhhhhhhhccCchhhhhhhhhhhcCCCc-----cccccccccccCh
Q psy63 492 ARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRD-----FQCKVCDRAFFDV 549 (585)
Q Consensus 492 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~l~~~~~~~~~~~~~-----~~C~~C~~~f~~~ 549 (585)
++.+.|++|+..|.++..+....+.-....++..+-. +..| ..|+.||.+|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~----~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYK----GVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccC----CCCCeeeeEEECCCCCCccccc
Confidence 3567899999999988877777765544444433222 2233 4699999998865
No 77
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=81.39 E-value=0.88 Score=26.85 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=4.7
Q ss_pred CccCccccc
Q psy63 494 PFICEFCSA 502 (585)
Q Consensus 494 ~~~C~~C~~ 502 (585)
|..|++||.
T Consensus 18 p~~CP~Cg~ 26 (34)
T cd00729 18 PEKCPICGA 26 (34)
T ss_pred CCcCcCCCC
Confidence 445555554
No 78
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.20 E-value=1 Score=35.00 Aligned_cols=30 Identities=30% Similarity=0.789 Sum_probs=24.5
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCCh
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTK 43 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~ 43 (585)
..|+.||+.| .--++.|-+||.||..|.-.
T Consensus 10 R~Cp~CG~kF------------YDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKF------------YDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchh------------ccCCCCCccCCCCCCccCcc
Confidence 3699999998 33456789999999999866
No 79
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=77.97 E-value=1.1 Score=28.75 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=21.3
Q ss_pred CCCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccC
Q psy63 1 MYACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYK 41 (585)
Q Consensus 1 ~y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~ 41 (585)
.|.|+.||..|... .....+.|+.|+..+.
T Consensus 3 ~y~C~~CG~~~~~~-----------~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 3 EYKCARCGREVELD-----------EYGTGVRCPYCGYRIL 32 (46)
T ss_pred EEECCCCCCEEEEC-----------CCCCceECCCCCCeEE
Confidence 48999999988532 2222689999997654
No 80
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.95 E-value=0.57 Score=42.02 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.1
Q ss_pred ccCCCccccCCCh
Q psy63 383 YECDTCGHGLSSK 395 (585)
Q Consensus 383 ~~C~~C~~~f~~~ 395 (585)
..||.||+++...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5688888876643
No 81
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=76.86 E-value=0.89 Score=35.41 Aligned_cols=27 Identities=26% Similarity=0.663 Sum_probs=19.5
Q ss_pred CCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCC
Q psy63 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKT 42 (585)
Q Consensus 3 ~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~ 42 (585)
-|+.||..+.- ....+.|+.|++.+..
T Consensus 2 fC~~Cg~~l~~-------------~~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTP-------------KNGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCccccc-------------CCCeEECcCCCCcccc
Confidence 38999987731 1236899999988764
No 82
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=76.85 E-value=1.8 Score=23.67 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=8.9
Q ss_pred ccCCCccccCC
Q psy63 383 YECDTCGHGLS 393 (585)
Q Consensus 383 ~~C~~C~~~f~ 393 (585)
-.|+.||+.|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 47999998885
No 83
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=76.01 E-value=1.5 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.530 Sum_probs=24.4
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccC
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYK 41 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~ 41 (585)
+.||.|+..|.-..... ........|+.|+..|.
T Consensus 3 ~~CP~C~~~~~v~~~~~------~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQL------GANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHc------CCCCCEEECCCCCCEEE
Confidence 57999999997665432 22334689999998874
No 84
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=75.77 E-value=1.8 Score=33.63 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=5.9
Q ss_pred CccccCccCCccC
Q psy63 437 RNQVCSYCGKTYK 449 (585)
Q Consensus 437 ~~~~C~~C~~~f~ 449 (585)
.|..|++||..|.
T Consensus 25 ~PivCP~CG~~~~ 37 (108)
T PF09538_consen 25 DPIVCPKCGTEFP 37 (108)
T ss_pred CCccCCCCCCccC
Confidence 3444444444443
No 85
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=74.12 E-value=2.2 Score=25.59 Aligned_cols=33 Identities=21% Similarity=0.581 Sum_probs=22.3
Q ss_pred cccccCCcccCChHHHHhhhhhhcccccchhhhhhhhccCCCCccCCCccccC
Q psy63 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGL 392 (585)
Q Consensus 340 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f 392 (585)
..|+.|+..|.-..+. +.......+|+.|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~--------------------ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK--------------------IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH--------------------CCCCCcEEECCCCCCEe
Confidence 4688888888765542 22334457899998876
No 86
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=72.65 E-value=2.4 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.697 Sum_probs=25.2
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccC
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYK 41 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~ 41 (585)
.+||.|+..|.-..+- +-.+.....|+.|+-.|.
T Consensus 3 i~CP~C~~~f~v~~~~------l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDK------LPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHH------cccCCcEEECCCCCcEee
Confidence 3699999999877642 234455789999998874
No 87
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=71.24 E-value=2.1 Score=27.04 Aligned_cols=28 Identities=36% Similarity=0.851 Sum_probs=21.1
Q ss_pred CCCCCccccccCCHHHHHHHHHHhcCCCCceecCcccccc
Q psy63 1 MYACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTY 40 (585)
Q Consensus 1 ~y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f 40 (585)
.|.|..||..|... ...+..|+.|+..-
T Consensus 2 ~Y~C~~Cg~~~~~~------------~~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIK------------SKDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecC------------CCCceECCCCCceE
Confidence 38899999988632 34678999998654
No 88
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=69.53 E-value=1.6 Score=36.43 Aligned_cols=13 Identities=38% Similarity=0.835 Sum_probs=7.2
Q ss_pred cccccCCcccCCh
Q psy63 340 FQCTVCDKKFATP 352 (585)
Q Consensus 340 ~~C~~C~~~f~~~ 352 (585)
++|+.||++|.+.
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 5555555555543
No 89
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=69.47 E-value=2.6 Score=35.51 Aligned_cols=24 Identities=38% Similarity=1.005 Sum_probs=15.3
Q ss_pred cccccccccccCChhhHHHHHhhccCCCCccCccccc
Q psy63 466 LYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSA 502 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~ 502 (585)
.|.|++||+. +-|+.|-+|++||.
T Consensus 134 ~~vC~vCGy~-------------~~ge~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYT-------------HEGEAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCc-------------ccCCCCCcCCCCCC
Confidence 5777777653 34566777777763
No 90
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=68.12 E-value=2.9 Score=35.28 Aligned_cols=23 Identities=22% Similarity=0.626 Sum_probs=18.4
Q ss_pred CccCcccccccCCchhhhhhhhhccCchhhhhhhhhhhcCCCcccccccc
Q psy63 494 PFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCD 543 (585)
Q Consensus 494 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~l~~~~~~~~~~~~~~~C~~C~ 543 (585)
.|.|.+||+.+ .++.|-+||+||
T Consensus 134 ~~vC~vCGy~~---------------------------~ge~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGYTH---------------------------EGEAPEVCPICG 156 (166)
T ss_pred EEEcCCCCCcc---------------------------cCCCCCcCCCCC
Confidence 59999998854 346788999998
No 91
>KOG2186|consensus
Probab=67.92 E-value=2.9 Score=37.31 Aligned_cols=47 Identities=32% Similarity=0.620 Sum_probs=38.5
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCChhhHHHHHhh
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKI 52 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 52 (585)
|.|..||.... +..|-+|+...+. .-|.|-.|++.|.. .+...|.+-
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn--~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRN--AYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccC--CeeEEeeccccccc-chhhhhhhh
Confidence 78999999876 5567889875543 67999999999998 888889754
No 92
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=67.14 E-value=3.8 Score=32.42 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=25.5
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCChhhH
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSL 46 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~~~l 46 (585)
..|+.||+.|- --++.|-.|+.|+..|.-...+
T Consensus 10 r~Cp~cg~kFY------------DLnk~p~vcP~cg~~~~~~~~~ 42 (129)
T TIGR02300 10 RICPNTGSKFY------------DLNRRPAVSPYTGEQFPPEEAL 42 (129)
T ss_pred ccCCCcCcccc------------ccCCCCccCCCcCCccCcchhh
Confidence 47999999983 3456789999999998765333
No 93
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=66.46 E-value=4.2 Score=26.54 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=19.7
Q ss_pred cccccccccccCh-----hhHHHHHh-hhc
Q psy63 537 FQCKVCDRAFFDV-----YNLKLHMR-IHT 560 (585)
Q Consensus 537 ~~C~~C~~~f~~~-----~~l~~H~~-~h~ 560 (585)
-.|..|++.+... +.|.+|++ +|.
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 4799999999776 69999998 554
No 94
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.83 E-value=5 Score=26.89 Aligned_cols=11 Identities=27% Similarity=0.909 Sum_probs=8.1
Q ss_pred CceecCccccc
Q psy63 29 QRSVCDTCGRT 39 (585)
Q Consensus 29 ~~~~C~~C~~~ 39 (585)
..|.|+.||..
T Consensus 24 ~~F~CPnCG~~ 34 (59)
T PRK14890 24 VKFLCPNCGEV 34 (59)
T ss_pred CEeeCCCCCCe
Confidence 45888888776
No 95
>KOG2186|consensus
Probab=64.40 E-value=3.2 Score=36.99 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=26.6
Q ss_pred cccCccCCccCCchhhhhHhhhcCCCCcccccccccccCChhhHHHHHh
Q psy63 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLT 487 (585)
Q Consensus 439 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~ 487 (585)
|.|..||.+.. +..+.+|+..-++ .-|.|-.|++.|.. .+...|..
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 45666666554 3345556655555 45666666666666 55566654
No 96
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=64.34 E-value=5.5 Score=25.17 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=8.2
Q ss_pred eecccccccccCc----hhHHHHHH
Q psy63 102 YFCHICKKVFLRN----RNLVCHIK 122 (585)
Q Consensus 102 ~~C~~C~~~f~~~----~~l~~H~~ 122 (585)
..|.+|++.+... ..|.+|++
T Consensus 17 a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 17 AKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp EEETTTTEE-----SSTHHHHHHHH
T ss_pred EEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 4455555444432 44555543
No 97
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=64.23 E-value=6.3 Score=26.34 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.2
Q ss_pred CceecCccccccCC
Q psy63 29 QRSVCDTCGRTYKT 42 (585)
Q Consensus 29 ~~~~C~~C~~~f~~ 42 (585)
..|.|+.||..-..
T Consensus 26 v~F~CPnCGe~~I~ 39 (61)
T COG2888 26 VKFPCPNCGEVEIY 39 (61)
T ss_pred eEeeCCCCCceeee
Confidence 45788888855443
No 98
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=63.85 E-value=4.3 Score=23.54 Aligned_cols=27 Identities=30% Similarity=0.763 Sum_probs=18.3
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCcccccc
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTY 40 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f 40 (585)
|.|..|+..+. -....+..|+.||...
T Consensus 1 Y~C~~Cg~~~~------------~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVE------------LKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-------------BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeE------------cCCCCcEECCcCCCeE
Confidence 78999998875 1224567899998653
No 99
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=63.46 E-value=3.7 Score=25.30 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=3.9
Q ss_pred eeCccccccc
Q psy63 131 HQCSVCGKAF 140 (585)
Q Consensus 131 ~~C~~C~~~f 140 (585)
|+|..||..|
T Consensus 6 y~C~~Cg~~f 15 (41)
T smart00834 6 YRCEDCGHTF 15 (41)
T ss_pred EEcCCCCCEE
Confidence 3344444333
No 100
>PHA00626 hypothetical protein
Probab=63.38 E-value=3.1 Score=27.28 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=5.5
Q ss_pred cccccccccccC
Q psy63 466 LYVCETCGKEFM 477 (585)
Q Consensus 466 ~~~C~~C~~~f~ 477 (585)
.|.|+.||+.|+
T Consensus 23 rYkCkdCGY~ft 34 (59)
T PHA00626 23 DYVCCDCGYNDS 34 (59)
T ss_pred ceEcCCCCCeec
Confidence 344444444443
No 101
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=63.07 E-value=6.8 Score=33.20 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=9.4
Q ss_pred CCccCCccccccCChHHH
Q psy63 409 KKYVCQQCGASFTQWASL 426 (585)
Q Consensus 409 ~~~~C~~C~~~f~~~~~l 426 (585)
.-|.|+.|+..|+...++
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAM 125 (158)
T ss_pred CeEECCCCCcEeeHHHHH
Confidence 345555555555555444
No 102
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=62.94 E-value=5.6 Score=21.75 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.4
Q ss_pred cccccccccccChhhHHHHHh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMR 557 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~ 557 (585)
..|++|++.+ ....++.|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3599999998 6678888876
No 103
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=62.68 E-value=6.3 Score=25.28 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=6.7
Q ss_pred CCCCccCCCcccc
Q psy63 379 LLKPYECDTCGHG 391 (585)
Q Consensus 379 ~~~~~~C~~C~~~ 391 (585)
....|.|+.|+..
T Consensus 31 Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 31 LPDDWVCPVCGAP 43 (47)
T ss_dssp S-TT-B-TTTSSB
T ss_pred CCCCCcCcCCCCc
Confidence 3456889888753
No 104
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=62.13 E-value=2.8 Score=35.03 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=6.0
Q ss_pred eecccccccccCc
Q psy63 102 YFCHICKKVFLRN 114 (585)
Q Consensus 102 ~~C~~C~~~f~~~ 114 (585)
++|+.|+++|.+.
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 4444444444443
No 105
>PF15269 zf-C2H2_7: Zinc-finger
Probab=61.75 E-value=5 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred cccccccccccChhhHHHHHhh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRI 558 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~ 558 (585)
|+|-.|+.+...++.|-.||+-
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 7899999999999999999974
No 106
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=61.43 E-value=4.5 Score=27.52 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=8.7
Q ss_pred chhhhhHhhhcCCCCcccccc
Q psy63 451 PNHLRSHLNTHTKKRLYVCET 471 (585)
Q Consensus 451 ~~~l~~H~~~h~~~~~~~C~~ 471 (585)
+..|..|+...-..++..|++
T Consensus 23 r~~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 23 RKELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp CCCHHHHHHTTSTTSEEE-SS
T ss_pred HHHHHHHHHccCCCCcEECCC
Confidence 344445544333334444444
No 107
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=60.55 E-value=4.2 Score=26.74 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=5.3
Q ss_pred eeCcccccccC
Q psy63 131 HQCSVCGKAFA 141 (585)
Q Consensus 131 ~~C~~C~~~f~ 141 (585)
|+|..|+..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 44555554443
No 108
>PF12907 zf-met2: Zinc-binding
Probab=59.69 E-value=6.2 Score=24.22 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=17.0
Q ss_pred CCCCcccc---ccCCHHHHHHHHHHhcCCC
Q psy63 2 YACEECGK---SFKTKIQLCAHKELVHEGK 28 (585)
Q Consensus 2 y~C~~C~~---~f~~~~~L~~H~~~~h~~~ 28 (585)
++|.+|-. ...+...|..|....|...
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 56777774 3355566777777666554
No 109
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=59.68 E-value=7.5 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.930 Sum_probs=8.5
Q ss_pred cccccCCcccCC
Q psy63 340 FQCTVCDKKFAT 351 (585)
Q Consensus 340 ~~C~~C~~~f~~ 351 (585)
|+|..|++.+.-
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 677778777664
No 110
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=59.63 E-value=4.2 Score=36.36 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=19.2
Q ss_pred CCCccCcccccccCCchhhhhhhhhcc
Q psy63 492 ARPFICEFCSAGFKTKKHLSQHHRTHK 518 (585)
Q Consensus 492 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 518 (585)
.+|+.|+.||+....-..|..=.|+|.
T Consensus 207 ~k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 207 GKPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred CCCCCCCCCCCcccccccceeeeecch
Confidence 367888888887777777766666554
No 111
>KOG2807|consensus
Probab=59.44 E-value=14 Score=34.57 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=39.9
Q ss_pred CceecCccccccCChhhHHHHHhhccCccCccccccccccCCCccccCCCCcccccChhHHHhhhhhcCCCceeeccccc
Q psy63 29 QRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICK 108 (585)
Q Consensus 29 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 108 (585)
.|-.|+.|+.+..+...|.+=..-=-+.+ +...++.......-.|..|+.. -.+...|.|..|.
T Consensus 289 LP~eCpiC~ltLVss~hLARSyhhL~PL~---~F~Eip~~~~~~~~~Cf~C~~~-------------~~~~~~y~C~~Ck 352 (378)
T KOG2807|consen 289 LPIECPICSLTLVSSPHLARSYHHLFPLK---PFVEIPETEYNGSRFCFACQGE-------------LLSSGRYRCESCK 352 (378)
T ss_pred CCccCCccceeEecchHHHHHHHhhcCCc---chhhccccccCCCcceeeeccc-------------cCCCCcEEchhcc
Confidence 57789999998888777765332111111 1111111111111225555111 1223458888888
Q ss_pred ccccCchhHHHH
Q psy63 109 KVFLRNRNLVCH 120 (585)
Q Consensus 109 ~~f~~~~~l~~H 120 (585)
..|-..-+.-.|
T Consensus 353 ~~FCldCDv~iH 364 (378)
T KOG2807|consen 353 NVFCLDCDVFIH 364 (378)
T ss_pred ceeeccchHHHH
Confidence 888777777777
No 112
>KOG2807|consensus
Probab=59.39 E-value=17 Score=34.01 Aligned_cols=100 Identities=21% Similarity=0.465 Sum_probs=50.6
Q ss_pred CcccccccCccccCHHHHHHHHhhcCCCCCccCCCCCccccChHHHHHHHHHhhhhhhhhcccccCCCCCCCCCCchhhh
Q psy63 213 QKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRV 292 (585)
Q Consensus 213 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~C~~C~~~ 292 (585)
..|.|+.|.... -.-|..|+.|+-+..+..+|.+-..--.+..+-.........+. -.|-.|+.
T Consensus 275 ~Gy~CP~Ckakv--------------CsLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~-~~Cf~C~~- 338 (378)
T KOG2807|consen 275 GGYFCPQCKAKV--------------CSLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGS-RFCFACQG- 338 (378)
T ss_pred CceeCCcccCee--------------ecCCccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCC-cceeeecc-
Confidence 456777775433 23477888888888777777654321111111111111111111 12555511
Q ss_pred ccCchhHHHHHhhcCCCCccccccccccccCcccHHHHhhhcCCCCCcccccCC
Q psy63 293 MNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCD 346 (585)
Q Consensus 293 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~ 346 (585)
.-.+...|.|+.|...|-..-+...|...| .|+.|.
T Consensus 339 ------------~~~~~~~y~C~~Ck~~FCldCDv~iHesLh------~CpgCe 374 (378)
T KOG2807|consen 339 ------------ELLSSGRYRCESCKNVFCLDCDVFIHESLH------NCPGCE 374 (378)
T ss_pred ------------ccCCCCcEEchhccceeeccchHHHHhhhh------cCCCcC
Confidence 112334577777777777666666666554 355554
No 113
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=58.95 E-value=10 Score=31.69 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=6.4
Q ss_pred CccCCccccccCC
Q psy63 410 KYVCQQCGASFTQ 422 (585)
Q Consensus 410 ~~~C~~C~~~f~~ 422 (585)
.|.|+.|+..|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 3455555555443
No 114
>KOG2071|consensus
Probab=58.88 E-value=5.9 Score=40.38 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.2
Q ss_pred CCcccccccccccCChhhHHHHHhhcc
Q psy63 464 KRLYVCETCGKEFMKLELLKSHLTTHL 490 (585)
Q Consensus 464 ~~~~~C~~C~~~f~~~~~L~~H~~~H~ 490 (585)
..|-+|..||.+|........||..|.
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 457889999999999888888887774
No 115
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.83 E-value=6.8 Score=31.05 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=4.7
Q ss_pred ccccCccCCcc
Q psy63 438 NQVCSYCGKTY 448 (585)
Q Consensus 438 ~~~C~~C~~~f 448 (585)
|..|++||..|
T Consensus 26 p~vcP~cg~~~ 36 (129)
T TIGR02300 26 PAVSPYTGEQF 36 (129)
T ss_pred CccCCCcCCcc
Confidence 34444444443
No 116
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=58.63 E-value=3.3 Score=29.37 Aligned_cols=7 Identities=57% Similarity=0.800 Sum_probs=2.7
Q ss_pred ccccccC
Q psy63 499 FCSAGFK 505 (585)
Q Consensus 499 ~C~~~f~ 505 (585)
.||..|+
T Consensus 34 eCg~tF~ 40 (72)
T PRK09678 34 NCSATFI 40 (72)
T ss_pred CCCCEEE
Confidence 3444333
No 117
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=57.97 E-value=3.7 Score=23.35 Aligned_cols=26 Identities=31% Similarity=0.850 Sum_probs=13.2
Q ss_pred CCCccccccCCHHHHHHHHHHhcCCCCceecCcccccc
Q psy63 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTY 40 (585)
Q Consensus 3 ~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f 40 (585)
+|+.|+..+.- .+...|.|+.|+..+
T Consensus 4 ~Cp~C~se~~y------------~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTY------------EDGELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----E------------E-SSSEEETTTTEEE
T ss_pred CCCCCCCccee------------ccCCEEeCCcccccC
Confidence 58888877643 345679999998653
No 118
>PF12907 zf-met2: Zinc-binding
Probab=57.32 E-value=4.6 Score=24.80 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=14.0
Q ss_pred eecccccccc---cCchhHHHHHHhhhcCC
Q psy63 102 YFCHICKKVF---LRNRNLVCHIKAVHENV 128 (585)
Q Consensus 102 ~~C~~C~~~f---~~~~~l~~H~~~~h~~~ 128 (585)
+.|.+|..+| .+...|..|....|+..
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 3466665333 33345666666555543
No 119
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=57.20 E-value=11 Score=31.42 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=18.6
Q ss_pred ceeecccccccccCchhHHHHHHhhhcCCCceeCccccccc
Q psy63 100 KEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAF 140 (585)
Q Consensus 100 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f 140 (585)
..|.|+.|+..|....++.. ... ...|.|+.||...
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~----~d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQL----LDM-DGTFTCPRCGEEL 133 (147)
T ss_pred cEEECcCCCCEeeHHHHHHh----cCC-CCcEECCCCCCEE
Confidence 45667777666664443322 011 2336666666543
No 120
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=57.15 E-value=5.2 Score=25.76 Aligned_cols=11 Identities=45% Similarity=1.183 Sum_probs=6.2
Q ss_pred ccccccccccc
Q psy63 466 LYVCETCGKEF 476 (585)
Q Consensus 466 ~~~C~~C~~~f 476 (585)
.|.|..||+.|
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 35555666555
No 121
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=56.71 E-value=8.8 Score=32.50 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=15.8
Q ss_pred CCcccccccccccCChhhHHHHHhhccCCCCccCcccccc
Q psy63 464 KRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503 (585)
Q Consensus 464 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~ 503 (585)
..-|.|+.|+..|+...++. .-|.|+.||..
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM 137 (158)
T ss_pred CCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence 33455555555555555543 13555555553
No 122
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=56.52 E-value=13 Score=34.33 Aligned_cols=78 Identities=23% Similarity=0.448 Sum_probs=46.7
Q ss_pred CCCCCchhhhccCchhHHHHHhhc----------CCC--CccccccccccccCcccHHHHhhhcCCCCCcccccCCcccC
Q psy63 283 GYQCNICGRVMNDRTNLKVHMRNH----------TGE--KKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFA 350 (585)
Q Consensus 283 ~~~C~~C~~~f~~~~~l~~H~~~h----------~~~--~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 350 (585)
+..|+.|+........|.+-..-- .++ +.--|-.|.-.|.....-..- .-.....|+|+.|...|-
T Consensus 322 Pi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~--~~~ss~rY~Ce~CK~~FC 399 (421)
T COG5151 322 PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFD--ESTSSGRYQCELCKSTFC 399 (421)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCccc--ccccccceechhhhhhhh
Confidence 567888887766554444322110 111 123488888877654321110 112345799999999999
Q ss_pred ChHHHHhhhhhh
Q psy63 351 TPAGLREHKRVH 362 (585)
Q Consensus 351 ~~~~l~~H~~~h 362 (585)
.--+.-.|...|
T Consensus 400 ~dCdvfiHe~Lh 411 (421)
T COG5151 400 SDCDVFIHETLH 411 (421)
T ss_pred hhhHHHHHHHHh
Confidence 988888887654
No 123
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=56.36 E-value=11 Score=33.84 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=41.1
Q ss_pred CCCceeCcccccccCCHHHHHHHHhhc--cCCCCccCCCcchhhhcccccccccccccCCceeccccCCCCCChHHHHHH
Q psy63 127 NVREHQCSVCGKAFADITNMKVHMRIH--TGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSH 204 (585)
Q Consensus 127 ~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H 204 (585)
+.+.|+|.+|+.- .-...--.|+..- .....|+|..|++. ..|.|--|...|-. .|
T Consensus 139 GGrif~CsfC~~f-lCEDDQFEHQAsCQvLe~E~~KC~SCNrl----------------Gq~sCLRCK~cfCd-----dH 196 (314)
T PF06524_consen 139 GGRIFKCSFCDNF-LCEDDQFEHQASCQVLESETFKCQSCNRL----------------GQYSCLRCKICFCD-----DH 196 (314)
T ss_pred CCeEEEeecCCCe-eeccchhhhhhhhhhhhcccccccccccc----------------cchhhhheeeeehh-----hh
Confidence 4567777777532 2222223344332 12345777777642 23444444444432 23
Q ss_pred HHhh---cCCCCcccccccCccccCHHHHHH
Q psy63 205 IRNS---HTIHQKSICDVCGKEFRMKRQLKE 232 (585)
Q Consensus 205 ~~~~---h~~~~~~~C~~C~~~f~~~~~l~~ 232 (585)
++.. -...++++|+.|+........|..
T Consensus 197 vrrKg~ky~k~k~~PCPKCg~et~eTkdLSm 227 (314)
T PF06524_consen 197 VRRKGFKYEKGKPIPCPKCGYETQETKDLSM 227 (314)
T ss_pred hhhcccccccCCCCCCCCCCCccccccccee
Confidence 3221 122356777777776665555543
No 124
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=55.85 E-value=6.1 Score=32.01 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=17.1
Q ss_pred cccccccccccChhhHHHHHhhhcCCCc
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKK 564 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~ 564 (585)
..|-+||+.|. .|.+|++.|+|-.|
T Consensus 73 i~clecGk~~k---~LkrHL~~~~gltp 97 (132)
T PF05443_consen 73 IICLECGKKFK---TLKRHLRTHHGLTP 97 (132)
T ss_dssp EE-TBT--EES---BHHHHHHHTT-S-H
T ss_pred eEEccCCcccc---hHHHHHHHccCCCH
Confidence 57999999997 57999999988654
No 125
>PF15269 zf-C2H2_7: Zinc-finger
Probab=55.66 E-value=14 Score=22.85 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=18.1
Q ss_pred CccccCCCCcccccChhHHHhhhhh
Q psy63 71 KVSYKCPDCSVIVVSYSGFKSHLDI 95 (585)
Q Consensus 71 ~~~~~C~~C~~~f~~~~~l~~H~~~ 95 (585)
...|+|..|+++....+.|-.||+-
T Consensus 18 p~~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 18 PFKYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred CccceeecCCcccchHHHHHHHHHH
Confidence 4457788888887777777777753
No 126
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.47 E-value=11 Score=32.57 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=8.7
Q ss_pred CccCCccccccCChHHH
Q psy63 410 KYVCQQCGASFTQWASL 426 (585)
Q Consensus 410 ~~~C~~C~~~f~~~~~l 426 (585)
-|.|+.|+..|+...++
T Consensus 117 ~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAM 133 (178)
T ss_pred EEECCCCCcEEeHHHHh
Confidence 45555555555554443
No 127
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.38 E-value=9.1 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.621 Sum_probs=17.7
Q ss_pred ceeecccccccccCchhHHHHHHhhhcCCCceeCcccccc
Q psy63 100 KEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKA 139 (585)
Q Consensus 100 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~ 139 (585)
..|.|+.|+..|+...++. ..|.|+.||..
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~----------~~F~Cp~Cg~~ 145 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME----------YGFRCPQCGEM 145 (178)
T ss_pred CEEECCCCCcEEeHHHHhh----------cCCcCCCCCCC
Confidence 4566766666666655542 24666666654
No 128
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.22 E-value=6.2 Score=24.59 Aligned_cols=9 Identities=56% Similarity=1.387 Sum_probs=3.6
Q ss_pred cCCCcchhh
Q psy63 160 VCETCGASF 168 (585)
Q Consensus 160 ~C~~C~~~f 168 (585)
.|..||..|
T Consensus 7 ~C~~Cg~~f 15 (42)
T PF09723_consen 7 RCEECGHEF 15 (42)
T ss_pred EeCCCCCEE
Confidence 344444333
No 129
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=52.53 E-value=5.3 Score=21.33 Aligned_cols=7 Identities=43% Similarity=1.682 Sum_probs=4.3
Q ss_pred CCCCccc
Q psy63 2 YACEECG 8 (585)
Q Consensus 2 y~C~~C~ 8 (585)
|.||.||
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 5666665
No 130
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=52.04 E-value=10 Score=24.71 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=9.8
Q ss_pred CceecCcccccc
Q psy63 29 QRSVCDTCGRTY 40 (585)
Q Consensus 29 ~~~~C~~C~~~f 40 (585)
..+.|..|+.++
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 578999998875
No 131
>KOG2593|consensus
Probab=49.29 E-value=13 Score=36.32 Aligned_cols=36 Identities=25% Similarity=0.582 Sum_probs=23.2
Q ss_pred CceeecccccccccCchhHHHHHHhhhcCCCceeCccccc
Q psy63 99 EKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGK 138 (585)
Q Consensus 99 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~ 138 (585)
...|.|+.|++.|+...++.- .-.....|.|..|+-
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~~L----~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEALQL----LDNETGEFHCENCGG 161 (436)
T ss_pred cccccCCccccchhhhHHHHh----hcccCceEEEecCCC
Confidence 345788888888877766642 233345677877763
No 132
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=49.04 E-value=12 Score=27.43 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=20.4
Q ss_pred CCCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCC
Q psy63 1 MYACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKT 42 (585)
Q Consensus 1 ~y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~ 42 (585)
+|.||.|++.-. .-.+..-+.|..|++.|.-
T Consensus 35 ~~~Cp~C~~~~V-----------kR~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 35 KHVCPFCGRTTV-----------KRIATGIWKCRKCGAKFAG 65 (89)
T ss_pred CCcCCCCCCcce-----------eeeccCeEEcCCCCCeecc
Confidence 478888887621 1123345889999998863
No 133
>KOG2071|consensus
Probab=48.85 E-value=14 Score=37.92 Aligned_cols=27 Identities=19% Similarity=0.583 Sum_probs=22.4
Q ss_pred CCccccCccCCccCCchhhhhHhhhcC
Q psy63 436 TRNQVCSYCGKTYKNPNHLRSHLNTHT 462 (585)
Q Consensus 436 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 462 (585)
..+..|..||.+|........||..|-
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 456789999999999988888877663
No 134
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=46.53 E-value=11 Score=29.75 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=13.8
Q ss_pred CCCceecCccccccCChh
Q psy63 27 GKQRSVCDTCGRTYKTKH 44 (585)
Q Consensus 27 ~~~~~~C~~C~~~f~~~~ 44 (585)
....+.|+.|++.+.-..
T Consensus 19 ~~~~l~C~kCgye~~~~~ 36 (113)
T COG1594 19 EGGKLVCRKCGYEEEASN 36 (113)
T ss_pred CCcEEECCCCCcchhccc
Confidence 344799999999887653
No 135
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=46.02 E-value=11 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=29.6
Q ss_pred Ccccccc--ccccccChhhHHHHHhhhcCCCcccccc----cchhhhhhhh
Q psy63 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYLSMR----MSENISAQFA 579 (585)
Q Consensus 535 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~c~~----c~~~~~~~~~ 579 (585)
.+..|+. |...+. +..|..|+...-..++-.|.+ |++.+.....
T Consensus 8 ~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l 57 (60)
T PF02176_consen 8 RPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVPREDL 57 (60)
T ss_dssp SEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEEHHHH
T ss_pred CEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccchhHH
Confidence 4567888 444455 668999999888889999999 9887765543
No 136
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=45.89 E-value=15 Score=39.59 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=4.8
Q ss_pred CccccCccCC
Q psy63 437 RNQVCSYCGK 446 (585)
Q Consensus 437 ~~~~C~~C~~ 446 (585)
.|..|+.||-
T Consensus 474 ~p~~Cp~Cgs 483 (730)
T COG1198 474 IPQSCPECGS 483 (730)
T ss_pred CCCCCCCCCC
Confidence 3445555553
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=45.78 E-value=15 Score=39.47 Aligned_cols=40 Identities=25% Similarity=0.566 Sum_probs=24.3
Q ss_pred cccCccCCccCCchhhhhHhhhcCCCCcccccccccccCChhhHHHHHhhccCCCCccCcccccc
Q psy63 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503 (585)
Q Consensus 439 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~ 503 (585)
..|+.|+.. |.- |.......|.+||. ....|..|+.||-.
T Consensus 445 ~~Cp~Cd~~------lt~----H~~~~~L~CH~Cg~---------------~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSP------LTL----HKATGQLRCHYCGY---------------QEPIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcc------eEE----ecCCCeeEeCCCCC---------------CCCCCCCCCCCCCC
Confidence 357777654 223 33335677877874 34567778888764
No 138
>KOG2272|consensus
Probab=44.93 E-value=14 Score=32.98 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=9.9
Q ss_pred CCccCCCcchhhhc
Q psy63 157 KKYVCETCGASFAL 170 (585)
Q Consensus 157 ~~~~C~~C~~~f~~ 170 (585)
.-|.|..|.+.|..
T Consensus 220 eHFvCa~CekPFlG 233 (332)
T KOG2272|consen 220 EHFVCAKCEKPFLG 233 (332)
T ss_pred hheeehhcCCcccc
Confidence 34788888887754
No 139
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.82 E-value=22 Score=39.14 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=6.4
Q ss_pred ccCcccccccC
Q psy63 495 FICEFCSAGFK 505 (585)
Q Consensus 495 ~~C~~C~~~f~ 505 (585)
+.|+.||..-.
T Consensus 664 y~CPKCG~El~ 674 (1121)
T PRK04023 664 DECEKCGREPT 674 (1121)
T ss_pred CcCCCCCCCCC
Confidence 55777765443
No 140
>KOG4377|consensus
Probab=44.16 E-value=18 Score=34.94 Aligned_cols=25 Identities=28% Similarity=0.711 Sum_probs=20.3
Q ss_pred cccc--cccccccChhhHHHHHhhhcC
Q psy63 537 FQCK--VCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 537 ~~C~--~C~~~f~~~~~l~~H~~~h~~ 561 (585)
|-|. -|+.++.+.+.+..|.|.|..
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkheR 428 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHER 428 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhhh
Confidence 4454 399999999999999988874
No 141
>KOG4167|consensus
Probab=42.68 E-value=7.1 Score=40.61 Aligned_cols=27 Identities=30% Similarity=0.737 Sum_probs=24.4
Q ss_pred CccccccccccccChhhHHHHHhhhcC
Q psy63 535 RDFQCKVCDRAFFDVYNLKLHMRIHTG 561 (585)
Q Consensus 535 ~~~~C~~C~~~f~~~~~l~~H~~~h~~ 561 (585)
--|-|..|++.|.....++.||++|--
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 349999999999999999999999963
No 142
>KOG2593|consensus
Probab=40.06 E-value=18 Score=35.41 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=8.9
Q ss_pred CCCCccccccCCHHHHH
Q psy63 2 YACEECGKSFKTKIQLC 18 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~ 18 (585)
|.||.|.+.|.+...|+
T Consensus 129 Y~Cp~C~kkyt~Lea~~ 145 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQ 145 (436)
T ss_pred ccCCccccchhhhHHHH
Confidence 55555555555544443
No 143
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.56 E-value=19 Score=27.45 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred CCCccccccCCHHHHHHHHHHhcCCCCceecCccccccC
Q psy63 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYK 41 (585)
Q Consensus 3 ~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~ 41 (585)
.||.|++.|- -.+..|.+||+|+++|.
T Consensus 11 idPetg~KFY------------DLNrdPiVsPytG~s~P 37 (129)
T COG4530 11 IDPETGKKFY------------DLNRDPIVSPYTGKSYP 37 (129)
T ss_pred cCccccchhh------------ccCCCccccCcccccch
Confidence 4778888773 34567899999999994
No 144
>PRK04023 DNA polymerase II large subunit; Validated
Probab=38.35 E-value=34 Score=37.75 Aligned_cols=7 Identities=43% Similarity=1.531 Sum_probs=3.1
Q ss_pred cCCCccc
Q psy63 384 ECDTCGH 390 (585)
Q Consensus 384 ~C~~C~~ 390 (585)
.|+.||.
T Consensus 628 fCpsCG~ 634 (1121)
T PRK04023 628 KCPSCGK 634 (1121)
T ss_pred cCCCCCC
Confidence 4444443
No 145
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=38.19 E-value=20 Score=31.91 Aligned_cols=31 Identities=29% Similarity=0.729 Sum_probs=23.2
Q ss_pred cccCCceeccccCCCCCChHHHHHHHHhhcC
Q psy63 180 SHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 210 (585)
Q Consensus 180 ~h~~~~~~C~~C~~~f~~~~~l~~H~~~~h~ 210 (585)
......|.|+.|++.|.-..-+..||.+.|.
T Consensus 72 e~~~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 72 EEDEDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SSSSEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred HHcCCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 3344579999999999999999999998885
No 146
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=36.02 E-value=28 Score=31.05 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=18.2
Q ss_pred CceeecccccccccCchhHHHHHHhhhc
Q psy63 99 EKEYFCHICKKVFLRNRNLVCHIKAVHE 126 (585)
Q Consensus 99 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~ 126 (585)
+..|.|++|+|.|.-..-...||...|.
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 3457777777777777777777777665
No 147
>KOG4167|consensus
Probab=35.92 E-value=10 Score=39.47 Aligned_cols=27 Identities=33% Similarity=0.660 Sum_probs=24.4
Q ss_pred CceeCcccccccCCHHHHHHHHhhccC
Q psy63 129 REHQCSVCGKAFADITNMKVHMRIHTG 155 (585)
Q Consensus 129 ~~~~C~~C~~~f~~~~~l~~H~~~h~~ 155 (585)
..|.|..|++.|.....++.||++|..
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 459999999999999999999999853
No 148
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=35.34 E-value=91 Score=19.78 Aligned_cols=9 Identities=44% Similarity=1.475 Sum_probs=5.0
Q ss_pred ccCCCcchh
Q psy63 159 YVCETCGAS 167 (585)
Q Consensus 159 ~~C~~C~~~ 167 (585)
+.|+.|+..
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 556666543
No 149
>PRK10220 hypothetical protein; Provisional
Probab=34.76 E-value=29 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.641 Sum_probs=22.9
Q ss_pred CCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCChh
Q psy63 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKH 44 (585)
Q Consensus 3 ~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~~ 44 (585)
.||.|+..|. ......|.|+.|+..++...
T Consensus 5 ~CP~C~seyt------------Y~d~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 5 HCPKCNSEYT------------YEDNGMYICPECAHEWNDAE 34 (111)
T ss_pred cCCCCCCcce------------EcCCCeEECCcccCcCCccc
Confidence 5999998773 34455799999999887654
No 150
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=33.93 E-value=26 Score=26.93 Aligned_cols=30 Identities=13% Similarity=0.590 Sum_probs=22.7
Q ss_pred CCCccccccCCHHHHHHHHHHhcCCCCceecCccccccCChh
Q psy63 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKH 44 (585)
Q Consensus 3 ~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~~ 44 (585)
.||.|+..|. ......|.||.|+..+....
T Consensus 4 ~CP~C~seyt------------Y~dg~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 4 PCPKCNSEYT------------YHDGTQLICPSCLYEWNENE 33 (109)
T ss_pred cCCcCCCcce------------EecCCeeECccccccccccc
Confidence 6999998873 34455799999999887553
No 151
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.
Probab=33.75 E-value=12 Score=26.64 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=5.1
Q ss_pred ccccCccCCccC
Q psy63 438 NQVCSYCGKTYK 449 (585)
Q Consensus 438 ~~~C~~C~~~f~ 449 (585)
...|..|+..+.
T Consensus 41 ~v~Cg~C~~~~~ 52 (71)
T PF05495_consen 41 RVICGKCRTEQP 52 (71)
T ss_dssp EEEETTT--EEE
T ss_pred CeECCCCCCccC
Confidence 455555555443
No 152
>KOG3214|consensus
Probab=33.56 E-value=12 Score=27.96 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=27.8
Q ss_pred cCCCccccccccccccChhhHHHHHhhhcCCCcccccccchhhhhhhh
Q psy63 532 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENISAQFA 579 (585)
Q Consensus 532 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~c~~~~~~~~~ 579 (585)
..+..|.|++|.-- ....-=|.+-++-..-.|++|+.+|.....
T Consensus 19 ~ldt~FnClfcnHe----k~v~~~~Dk~~~iG~~sC~iC~esFqt~it 62 (109)
T KOG3214|consen 19 PLDTQFNCLFCNHE----KSVSCTLDKKHNIGKASCRICEESFQTTIT 62 (109)
T ss_pred chheeeccCccccc----cceeeeehhhcCcceeeeeehhhhhccchH
Confidence 34467999999632 223333344444455679999999987643
No 153
>KOG2272|consensus
Probab=33.51 E-value=48 Score=29.74 Aligned_cols=97 Identities=23% Similarity=0.420 Sum_probs=45.5
Q ss_pred CccCCCcchhhhcccccccccccccCCceeccccCCCCCChHH-HHHHHHhhcCCCCcccccccCccccCH-HHHHHHHh
Q psy63 158 KYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKA-LTSHIRNSHTIHQKSICDVCGKEFRMK-RQLKEHMA 235 (585)
Q Consensus 158 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~-l~~H~~~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~ 235 (585)
.|.|..|...... ..|.--...-+..-|.|..|++...+.+. +..-+- --.-...+.+++|+.--... .....-|-
T Consensus 137 ~YvC~KCh~~iD~-~~l~fr~d~yH~yHFkCt~C~keL~sdaRevk~eLy-ClrChD~mgipiCgaC~rpIeervi~amg 214 (332)
T KOG2272|consen 137 RYVCQKCHAHIDE-QPLTFRGDPYHPYHFKCTTCGKELTSDAREVKGELY-CLRCHDKMGIPICGACRRPIEERVIFAMG 214 (332)
T ss_pred eeehhhhhhhccc-ccccccCCCCCccceecccccccccchhhhhcccee-ccccccccCCcccccccCchHHHHHHHhc
Confidence 5777777655443 22322222233445788888877655431 111000 00000123455555322221 12222233
Q ss_pred hcCCCCCccCCCCCccccChH
Q psy63 236 VHTTDRPFVCNMCPSTFKLKK 256 (585)
Q Consensus 236 ~h~~~~~~~C~~C~~~f~~~~ 256 (585)
.|-...-|.|..|.+.|---.
T Consensus 215 KhWHveHFvCa~CekPFlGHr 235 (332)
T KOG2272|consen 215 KHWHVEHFVCAKCEKPFLGHR 235 (332)
T ss_pred cccchhheeehhcCCcccchh
Confidence 333344699999999886543
No 154
>KOG1280|consensus
Probab=33.33 E-value=47 Score=31.55 Aligned_cols=37 Identities=27% Similarity=0.700 Sum_probs=27.5
Q ss_pred ceeccccCCCCCChHHHHHHHHhhcCCCC-cccccccC
Q psy63 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQ-KSICDVCG 221 (585)
Q Consensus 185 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~-~~~C~~C~ 221 (585)
.|.|++|+..--+...+..|+...|+... ...|++|+
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 58888888888888888888888886433 34566664
No 155
>PF14353 CpXC: CpXC protein
Probab=33.29 E-value=20 Score=29.04 Aligned_cols=8 Identities=50% Similarity=1.464 Sum_probs=3.3
Q ss_pred CCCcchhh
Q psy63 161 CETCGASF 168 (585)
Q Consensus 161 C~~C~~~f 168 (585)
|+.|+..|
T Consensus 4 CP~C~~~~ 11 (128)
T PF14353_consen 4 CPHCGHEF 11 (128)
T ss_pred CCCCCCee
Confidence 44444433
No 156
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=32.89 E-value=62 Score=30.71 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=18.9
Q ss_pred CccccccccccccCcccHHHHhhh
Q psy63 310 KKYICEVCGKGFVQWSSHYYHMFT 333 (585)
Q Consensus 310 ~~~~C~~C~~~f~~~~~l~~H~~~ 333 (585)
..+-|+.|++.|....-+..|+..
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~g 260 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEG 260 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhh
Confidence 346799999999888888888753
No 157
>KOG4377|consensus
Probab=32.66 E-value=32 Score=33.35 Aligned_cols=126 Identities=25% Similarity=0.499 Sum_probs=65.7
Q ss_pred CccC--CCccccCCChhhHHHHHhhccCC------------CCccC--CccccccCChHHHHhhhhhcCCCC-------c
Q psy63 382 PYEC--DTCGHGLSSKKSLDDHYRIHTGE------------KKYVC--QQCGASFTQWASLFYHKFSHSETR-------N 438 (585)
Q Consensus 382 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~------------~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~-------~ 438 (585)
-|.| +.|++.+-.+..+.+|+.+|... ..|.| .+|++ +-++...|..-|++.+ -
T Consensus 271 hyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrth 347 (480)
T KOG4377|consen 271 HYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTH 347 (480)
T ss_pred hhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecce
Confidence 4666 56888888899999999887532 23566 45877 3445556655554332 2
Q ss_pred cccCccC--CccCCchhhhhHhhhcCCC-----CcccccccccccCChhhHHHHHhhccCCCCccCcc--cccccCCchh
Q psy63 439 QVCSYCG--KTYKNPNHLRSHLNTHTKK-----RLYVCETCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKKH 509 (585)
Q Consensus 439 ~~C~~C~--~~f~~~~~l~~H~~~h~~~-----~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~ 509 (585)
|-|.-+| .+|.....-..|.+-+.++ +.|+=..|.+.--..+..- .-|.|.. |+..+.+.+.
T Consensus 348 fhC~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~c---------nhfhc~r~Gc~~tl~s~sq 418 (480)
T KOG4377|consen 348 FHCQRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGIC---------NHFHCDRLGCEATLYSVSQ 418 (480)
T ss_pred eEEeccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccce---------eeeeecccCCceEEEehhh
Confidence 5576666 4444222222233222221 1122122221111111111 1144543 7777888888
Q ss_pred hhhhhhhccC
Q psy63 510 LSQHHRTHKR 519 (585)
Q Consensus 510 l~~H~~~h~~ 519 (585)
+..|.|.|.+
T Consensus 419 m~shkrkheR 428 (480)
T KOG4377|consen 419 MASHKRKHER 428 (480)
T ss_pred hhhhhhhhhh
Confidence 8888777754
No 158
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=32.31 E-value=25 Score=28.13 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred cccccccccccChhhHHHHHhhhcCCCc
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKK 564 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~ 564 (585)
..|-.+|+.|. +|++|+.+|.|--|
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 47999999996 79999999998655
No 159
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=31.68 E-value=40 Score=21.87 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=4.6
Q ss_pred eeccccccccc
Q psy63 102 YFCHICKKVFL 112 (585)
Q Consensus 102 ~~C~~C~~~f~ 112 (585)
+.|..|+..|.
T Consensus 5 l~C~dCg~~Fv 15 (49)
T PF13451_consen 5 LTCKDCGAEFV 15 (49)
T ss_pred EEcccCCCeEE
Confidence 34444444433
No 160
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=31.54 E-value=20 Score=26.74 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=7.7
Q ss_pred ceecCccccccC
Q psy63 30 RSVCDTCGRTYK 41 (585)
Q Consensus 30 ~~~C~~C~~~f~ 41 (585)
.+.|..|+++|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PTZ00255 54 IWRCKGCKKTVA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 466777776664
No 161
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=31.04 E-value=39 Score=20.91 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=18.4
Q ss_pred eecCccccccC--ChhhHHHHHhhcc
Q psy63 31 SVCDTCGRTYK--TKHSLNQHMKIHS 54 (585)
Q Consensus 31 ~~C~~C~~~f~--~~~~l~~H~~~h~ 54 (585)
-.|+.|+..|. ...+-..|.+-|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 57999998886 5677778877663
No 162
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.47 E-value=39 Score=20.82 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=7.0
Q ss_pred eecccccccccCchhH
Q psy63 102 YFCHICKKVFLRNRNL 117 (585)
Q Consensus 102 ~~C~~C~~~f~~~~~l 117 (585)
+.|+.|+-.+.+..+|
T Consensus 20 d~C~~C~G~W~d~~el 35 (41)
T PF13453_consen 20 DVCPSCGGIWFDAGEL 35 (41)
T ss_pred EECCCCCeEEccHHHH
Confidence 3444444444444433
No 163
>KOG1280|consensus
Probab=30.11 E-value=37 Score=32.20 Aligned_cols=37 Identities=19% Similarity=0.529 Sum_probs=22.3
Q ss_pred eeecccccccccCchhHHHHHHhhhcCCC-ceeCcccc
Q psy63 101 EYFCHICKKVFLRNRNLVCHIKAVHENVR-EHQCSVCG 137 (585)
Q Consensus 101 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~-~~~C~~C~ 137 (585)
.|.|++|+..=.+...|..|+...|.... ...|++|+
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 46677777666666677777666665432 23455553
No 164
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=29.84 E-value=51 Score=37.54 Aligned_cols=54 Identities=28% Similarity=0.653 Sum_probs=34.0
Q ss_pred ccCCccccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhhcCCCCcccccccccccCChhhHHHHHhhcc
Q psy63 411 YVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490 (585)
Q Consensus 411 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~ 490 (585)
++|+.||..-. ...|+.||... +.+|.|+.||....... +
T Consensus 668 rkCPkCG~~t~----------------~~fCP~CGs~t---------------e~vy~CPsCGaev~~de---------s 707 (1337)
T PRK14714 668 RRCPSCGTETY----------------ENRCPDCGTHT---------------EPVYVCPDCGAEVPPDE---------S 707 (1337)
T ss_pred EECCCCCCccc----------------cccCcccCCcC---------------CCceeCccCCCccCCCc---------c
Confidence 78999986421 13688888763 23578999998654311 1
Q ss_pred CCCCccCcccccccCC
Q psy63 491 AARPFICEFCSAGFKT 506 (585)
Q Consensus 491 ~~~~~~C~~C~~~f~~ 506 (585)
+ ...|+.|+.....
T Consensus 708 ~--a~~CP~CGtplv~ 721 (1337)
T PRK14714 708 G--RVECPRCDVELTP 721 (1337)
T ss_pred c--cccCCCCCCcccc
Confidence 1 3469999865443
No 165
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.89 E-value=27 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.703 Sum_probs=21.1
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCCCceecCccccccC
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYK 41 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~ 41 (585)
|.||.||..+.-.... . .....|+.|+..+.
T Consensus 3 ~~CP~CG~~iev~~~~--------~-GeiV~Cp~CGaele 33 (54)
T TIGR01206 3 FECPDCGAEIELENPE--------L-GELVICDECGAELE 33 (54)
T ss_pred cCCCCCCCEEecCCCc--------c-CCEEeCCCCCCEEE
Confidence 7899999987533221 1 23568999998764
No 166
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.83 E-value=41 Score=21.90 Aligned_cols=30 Identities=33% Similarity=0.698 Sum_probs=18.4
Q ss_pred CCccccccCCHHHHHHHHHHhcCCCCceecCccccccCC
Q psy63 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKT 42 (585)
Q Consensus 4 C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~ 42 (585)
|+.||....... -.+...+.|+.|++.+.-
T Consensus 3 Cp~Cg~~l~~~~---------~~~~~~~vC~~Cg~~~~~ 32 (52)
T smart00661 3 CPKCGNMLIPKE---------GKEKRRFVCRKCGYEEPI 32 (52)
T ss_pred CCCCCCcccccc---------CCCCCEEECCcCCCeEEC
Confidence 888987432110 111247999999987654
No 167
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=28.72 E-value=36 Score=22.76 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=4.8
Q ss_pred CCceeCcccc
Q psy63 128 VREHQCSVCG 137 (585)
Q Consensus 128 ~~~~~C~~C~ 137 (585)
...|.|+.|.
T Consensus 29 i~tYmC~eC~ 38 (56)
T PF09963_consen 29 IHTYMCDECK 38 (56)
T ss_pred CcceeChhHH
Confidence 3445555553
No 168
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=28.48 E-value=22 Score=26.53 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=7.8
Q ss_pred ceecCccccccC
Q psy63 30 RSVCDTCGRTYK 41 (585)
Q Consensus 30 ~~~C~~C~~~f~ 41 (585)
.+.|..|+++|.
T Consensus 53 IW~C~~C~~~~A 64 (91)
T TIGR00280 53 IWTCRKCGAKFA 64 (91)
T ss_pred EEEcCCCCCEEe
Confidence 466777776664
No 169
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=28.34 E-value=31 Score=28.01 Aligned_cols=23 Identities=48% Similarity=0.896 Sum_probs=10.0
Q ss_pred ccccccccccCChhhHHHHHhhccCC
Q psy63 467 YVCETCGKEFMKLELLKSHLTTHLAA 492 (585)
Q Consensus 467 ~~C~~C~~~f~~~~~L~~H~~~H~~~ 492 (585)
-.|-.||+.|.. |++|++.|+|-
T Consensus 73 i~clecGk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S
T ss_pred eEEccCCcccch---HHHHHHHccCC
Confidence 445555655543 35555555544
No 170
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=28.13 E-value=45 Score=20.79 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=6.0
Q ss_pred ceeecccccccc
Q psy63 100 KEYFCHICKKVF 111 (585)
Q Consensus 100 ~~~~C~~C~~~f 111 (585)
..+.|+.|+.+.
T Consensus 18 g~~vC~~CG~Vl 29 (43)
T PF08271_consen 18 GELVCPNCGLVL 29 (43)
T ss_dssp TEEEETTT-BBE
T ss_pred CeEECCCCCCEe
Confidence 345666665543
No 171
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=27.56 E-value=49 Score=30.72 Aligned_cols=25 Identities=24% Similarity=0.688 Sum_probs=20.0
Q ss_pred ccccccccccccChhhHHHHHhhhc
Q psy63 536 DFQCKVCDRAFFDVYNLKLHMRIHT 560 (585)
Q Consensus 536 ~~~C~~C~~~f~~~~~l~~H~~~h~ 560 (585)
.|.|+.|...|-..-+.-.|...|-
T Consensus 388 rY~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 388 RYQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred ceechhhhhhhhhhhHHHHHHHHhh
Confidence 4888888888888888888877764
No 172
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=27.45 E-value=40 Score=33.97 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=15.4
Q ss_pred CCCccccccCCHHHHHHHHHHhcCC
Q psy63 3 ACEECGKSFKTKIQLCAHKELVHEG 27 (585)
Q Consensus 3 ~C~~C~~~f~~~~~L~~H~~~~h~~ 27 (585)
.|+.|.+.|.+...+..|+...|.+
T Consensus 59 iCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 59 ICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred eCCcccceeCCHHHHHHHHHHhhhh
Confidence 4666666666666666666555544
No 173
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=27.28 E-value=63 Score=26.01 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=10.0
Q ss_pred CCCccCCCccccCCCh
Q psy63 380 LKPYECDTCGHGLSSK 395 (585)
Q Consensus 380 ~~~~~C~~C~~~f~~~ 395 (585)
.+.|+|.+|..+....
T Consensus 78 ~~lYeCnIC~etS~ee 93 (140)
T PF05290_consen 78 PKLYECNICKETSAEE 93 (140)
T ss_pred CCceeccCcccccchh
Confidence 3567777777665443
No 174
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.18 E-value=62 Score=36.91 Aligned_cols=7 Identities=43% Similarity=1.379 Sum_probs=3.2
Q ss_pred ccCCCcc
Q psy63 383 YECDTCG 389 (585)
Q Consensus 383 ~~C~~C~ 389 (585)
++|+.||
T Consensus 668 rkCPkCG 674 (1337)
T PRK14714 668 RRCPSCG 674 (1337)
T ss_pred EECCCCC
Confidence 3444444
No 175
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=27.02 E-value=26 Score=21.57 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=5.4
Q ss_pred eecccccccc
Q psy63 102 YFCHICKKVF 111 (585)
Q Consensus 102 ~~C~~C~~~f 111 (585)
|.|..|+..+
T Consensus 29 y~C~~C~~~w 38 (40)
T smart00440 29 YVCTKCGHRW 38 (40)
T ss_pred EEeCCCCCEe
Confidence 5555555544
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.64 E-value=46 Score=34.61 Aligned_cols=47 Identities=30% Similarity=0.731 Sum_probs=0.0
Q ss_pred ccCCccccccCChHHHHhhhhhcCCCCccccCccCCccCCchhhhhHhhhcCCCCcccccccccccCChhhHHHHHhhcc
Q psy63 411 YVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490 (585)
Q Consensus 411 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~ 490 (585)
..|..|| ....|+.|+-. +..|.......|..||+ .
T Consensus 214 ~~C~~Cg-------------------~~~~C~~C~~~----------l~~h~~~~~l~Ch~Cg~---------------~ 249 (505)
T TIGR00595 214 LLCRSCG-------------------YILCCPNCDVS----------LTYHKKEGKLRCHYCGY---------------Q 249 (505)
T ss_pred eEhhhCc-------------------CccCCCCCCCc----------eEEecCCCeEEcCCCcC---------------c
Q ss_pred CCCCccCcccc
Q psy63 491 AARPFICEFCS 501 (585)
Q Consensus 491 ~~~~~~C~~C~ 501 (585)
...|..|+.|+
T Consensus 250 ~~~~~~Cp~C~ 260 (505)
T TIGR00595 250 EPIPKTCPQCG 260 (505)
T ss_pred CCCCCCCCCCC
No 177
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=26.25 E-value=35 Score=20.97 Aligned_cols=33 Identities=15% Similarity=0.552 Sum_probs=14.2
Q ss_pred cccCCCCcccccChhHHHhhhhhcCCCceeecccccccc
Q psy63 73 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVF 111 (585)
Q Consensus 73 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 111 (585)
+.+|..|...+... ..+..+.+.+.|++|+...
T Consensus 2 p~rC~~C~aylNp~------~~~~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 2 PVRCRRCRAYLNPF------CQFDDGGKTWICNFCGTKN 34 (40)
T ss_dssp S-B-TTT--BS-TT------SEEETTTTEEEETTT--EE
T ss_pred ccccCCCCCEECCc------ceEcCCCCEEECcCCCCcC
Confidence 34566676554333 3333345667777777643
No 178
>KOG2907|consensus
Probab=26.23 E-value=51 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.675 Sum_probs=18.1
Q ss_pred CCccccccCCHHHHHHHHHHhcCCCCceecCccccccCCh
Q psy63 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTK 43 (585)
Q Consensus 4 C~~C~~~f~~~~~L~~H~~~~h~~~~~~~C~~C~~~f~~~ 43 (585)
|+.||.....+ .......|..|...|.-.
T Consensus 10 C~~CG~ll~~~-----------~~~~~~~C~~Ck~~~~v~ 38 (116)
T KOG2907|consen 10 CSDCGSLLEEP-----------SAQSTVLCIRCKIEYPVS 38 (116)
T ss_pred hhhhhhhcccc-----------cccCceEeccccccCCHH
Confidence 67777655322 233446699999887643
No 179
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=26.05 E-value=47 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.6
Q ss_pred CCcccccCCcccCC
Q psy63 338 RNFQCTVCDKKFAT 351 (585)
Q Consensus 338 ~~~~C~~C~~~f~~ 351 (585)
.|-.|..||+.|.+
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 46789999999975
No 180
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.91 E-value=45 Score=35.91 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=15.6
Q ss_pred CCCcccccccccccCChhhHHHHHhhccCCCCccCcccccc
Q psy63 463 KKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503 (585)
Q Consensus 463 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~ 503 (585)
+.....|..||+. . .|..|+.||..
T Consensus 407 ~~~~l~Ch~CG~~---------------~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 407 AGGTPRCRWCGRA---------------A-PDWRCPRCGSD 431 (665)
T ss_pred CCCeeECCCCcCC---------------C-cCccCCCCcCC
Confidence 3446677777742 1 36678888764
No 181
>KOG4124|consensus
Probab=25.70 E-value=22 Score=33.47 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=38.5
Q ss_pred CCcccccc--ccccccChhhHHHHHh---------------hhcC----CCcccccccchhhhhhhhhhhcc
Q psy63 534 IRDFQCKV--CDRAFFDVYNLKLHMR---------------IHTG----EKKYLSMRMSENISAQFAVKHLQ 584 (585)
Q Consensus 534 ~~~~~C~~--C~~~f~~~~~l~~H~~---------------~h~~----~k~~~c~~c~~~~~~~~~~~~~~ 584 (585)
.++|+|++ |++.+.....|+.|-. -|.+ +|||.|.+|.+.+...-.|+-|+
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~ 418 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCcee
Confidence 47899985 9999999889988852 2333 68999999999887766665443
No 182
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=25.39 E-value=17 Score=22.20 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=5.5
Q ss_pred eecccccccc
Q psy63 102 YFCHICKKVF 111 (585)
Q Consensus 102 ~~C~~C~~~f 111 (585)
|.|..|+..|
T Consensus 29 y~C~~C~~~w 38 (39)
T PF01096_consen 29 YVCCNCGHRW 38 (39)
T ss_dssp EEESSSTEEE
T ss_pred EEeCCCCCee
Confidence 5566665543
No 183
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=25.37 E-value=35 Score=20.89 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.7
Q ss_pred CccCcccccccCCc
Q psy63 494 PFICEFCSAGFKTK 507 (585)
Q Consensus 494 ~~~C~~C~~~f~~~ 507 (585)
||+|..|+..|=.+
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 89999999998643
No 184
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=25.09 E-value=22 Score=19.83 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=10.2
Q ss_pred cccccccccccChhhHHHHHh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMR 557 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~ 557 (585)
|.|-.|++.| ...+.+.|..
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~ 20 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTS 20 (28)
T ss_dssp EEETTTTEEE-EGGGTTT---
T ss_pred CeeecCCCCc-CcCCcCCCCc
Confidence 3466677777 4445555544
No 185
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=24.23 E-value=33 Score=25.58 Aligned_cols=13 Identities=46% Similarity=0.953 Sum_probs=7.4
Q ss_pred CceeCcccccccC
Q psy63 129 REHQCSVCGKAFA 141 (585)
Q Consensus 129 ~~~~C~~C~~~f~ 141 (585)
..+.|..|++.|.
T Consensus 52 GIW~C~~C~~~~A 64 (90)
T PF01780_consen 52 GIWKCKKCGKKFA 64 (90)
T ss_dssp TEEEETTTTEEEE
T ss_pred EEeecCCCCCEEe
Confidence 3466666666553
No 186
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=24.10 E-value=32 Score=20.65 Aligned_cols=29 Identities=21% Similarity=0.616 Sum_probs=13.9
Q ss_pred ccCccCCccCCchhhhhHhhhcCCCCccccccc
Q psy63 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETC 472 (585)
Q Consensus 440 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C 472 (585)
.||.|+.. ..+.+|=....|...|.|..|
T Consensus 7 ~CP~C~s~----~~v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 7 HCPRCQST----EGVKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred eCCCCCCC----CcceeCCCCCCCCEeEecCcC
Confidence 45556532 113344444445555666655
No 187
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=23.94 E-value=43 Score=26.93 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=8.7
Q ss_pred cccccccccccCChh
Q psy63 466 LYVCETCGKEFMKLE 480 (585)
Q Consensus 466 ~~~C~~C~~~f~~~~ 480 (585)
|++|..||+.|.+.+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 455666666666543
No 188
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=23.34 E-value=60 Score=21.65 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.1
Q ss_pred CCCCceecCccccccC
Q psy63 26 EGKQRSVCDTCGRTYK 41 (585)
Q Consensus 26 ~~~~~~~C~~C~~~f~ 41 (585)
.+...|.|+.||..+-
T Consensus 10 ~~~v~~~Cp~cGipth 25 (55)
T PF13824_consen 10 PAHVNFECPDCGIPTH 25 (55)
T ss_pred ccccCCcCCCCCCcCc
Confidence 3456799999998764
No 189
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.24 E-value=38 Score=27.77 Aligned_cols=8 Identities=25% Similarity=1.045 Sum_probs=4.6
Q ss_pred cccccCCc
Q psy63 340 FQCTVCDK 347 (585)
Q Consensus 340 ~~C~~C~~ 347 (585)
+.||.||.
T Consensus 108 ~~CP~Cgs 115 (135)
T PRK03824 108 LKCPKCGS 115 (135)
T ss_pred cCCcCCCC
Confidence 45666653
No 190
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=23.08 E-value=56 Score=33.02 Aligned_cols=28 Identities=18% Similarity=0.597 Sum_probs=24.4
Q ss_pred ceeccccCCCCCChHHHHHHHHhhcCCC
Q psy63 185 QFVCSYCGNTYKNPKALTSHIRNSHTIH 212 (585)
Q Consensus 185 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~ 212 (585)
-+.|+.|++.|.+...+..|+...|...
T Consensus 57 FWiCp~CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 57 FWICPRCSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred EeeCCcccceeCCHHHHHHHHHHhhhhh
Confidence 3689999999999999999999888653
No 191
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.59 E-value=36 Score=23.87 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=11.5
Q ss_pred cccccccccccChhhHHHHHhhhcCCCcccccccchhh
Q psy63 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSMRMSENI 574 (585)
Q Consensus 537 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~c~~c~~~~ 574 (585)
-.|..|++.|.- -.+.+.|+.||..|
T Consensus 10 ~~C~~C~~~F~~------------~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 10 SNCMICGKKFSL------------FRRRHHCRNCGRVV 35 (69)
T ss_dssp SB-TTT--B-BS------------SS-EEE-TTT--EE
T ss_pred CcCcCcCCcCCC------------ceeeEccCCCCCEE
Confidence 458889999853 24556677777655
No 192
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=22.35 E-value=31 Score=25.73 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=6.9
Q ss_pred ceecCccccccC
Q psy63 30 RSVCDTCGRTYK 41 (585)
Q Consensus 30 ~~~C~~C~~~f~ 41 (585)
.+.|..|+++|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PRK03976 54 IWECRKCGAKFA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 356666666553
No 193
>KOG0717|consensus
Probab=22.29 E-value=46 Score=33.06 Aligned_cols=39 Identities=21% Similarity=0.564 Sum_probs=28.8
Q ss_pred eecccccccccCchhHHHHHHhh-hcCCCceeCcccccccCCHHHHHHHHhhcc
Q psy63 102 YFCHICKKVFLRNRNLVCHIKAV-HENVREHQCSVCGKAFADITNMKVHMRIHT 154 (585)
Q Consensus 102 ~~C~~C~~~f~~~~~l~~H~~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 154 (585)
+.|.+|+++|.+..+|..|.... |. .....|..+|..+.
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHk--------------env~eLrqemEEEe 332 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHK--------------ENVAELRQEMEEEE 332 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHH--------------HHHHHHHHHHHHhh
Confidence 88999999999999999997532 21 24456677776653
No 194
>KOG3408|consensus
Probab=21.95 E-value=65 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=15.5
Q ss_pred CCceeCcccccccCCHHHHHHHHhh
Q psy63 128 VREHQCSVCGKAFADITNMKVHMRI 152 (585)
Q Consensus 128 ~~~~~C~~C~~~f~~~~~l~~H~~~ 152 (585)
...|.|-.|.+-|.+...|..|.++
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhc
Confidence 3446666666666666666666543
No 195
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.78 E-value=63 Score=21.48 Aligned_cols=9 Identities=33% Similarity=1.169 Sum_probs=4.0
Q ss_pred cCCCccccC
Q psy63 384 ECDTCGHGL 392 (585)
Q Consensus 384 ~C~~C~~~f 392 (585)
+|+.||+.|
T Consensus 7 ~C~~Cg~~~ 15 (54)
T PF14446_consen 7 KCPVCGKKF 15 (54)
T ss_pred cChhhCCcc
Confidence 344444444
No 196
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.61 E-value=28 Score=30.86 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=12.0
Q ss_pred ccccCccCCccCCchhhhhHhhh
Q psy63 438 NQVCSYCGKTYKNPNHLRSHLNT 460 (585)
Q Consensus 438 ~~~C~~C~~~f~~~~~l~~H~~~ 460 (585)
.+.||+|+..|.....+..-+++
T Consensus 19 ~ieCPvC~tkFkkeev~tgsiRi 41 (267)
T COG1655 19 TIECPVCNTKFKKEEVKTGSIRI 41 (267)
T ss_pred eeccCcccchhhhhheeccceeE
Confidence 34566666666555444433443
No 197
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.15 E-value=64 Score=21.42 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.8
Q ss_pred ccCccccccc
Q psy63 495 FICEFCSAGF 504 (585)
Q Consensus 495 ~~C~~C~~~f 504 (585)
+.|..||..|
T Consensus 19 ~~Cr~Cg~~~ 28 (57)
T cd00065 19 HHCRNCGRIF 28 (57)
T ss_pred cccCcCcCCc
Confidence 4455555444
No 198
>KOG1842|consensus
Probab=20.84 E-value=61 Score=32.01 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=21.4
Q ss_pred CCCCccccccCCHHHHHHHHHHhcCCC
Q psy63 2 YACEECGKSFKTKIQLCAHKELVHEGK 28 (585)
Q Consensus 2 y~C~~C~~~f~~~~~L~~H~~~~h~~~ 28 (585)
|.||+|.+.|.+...|..|....|.++
T Consensus 16 flCPiC~~dl~~~~~L~~H~d~eH~~e 42 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLDVEHFEE 42 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHhhhcccc
Confidence 678888888888888888887777654
No 199
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=20.19 E-value=61 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=9.2
Q ss_pred CccCcccccccC-Cc-hhhhhhhh
Q psy63 494 PFICEFCSAGFK-TK-KHLSQHHR 515 (585)
Q Consensus 494 ~~~C~~C~~~f~-~~-~~l~~H~~ 515 (585)
.|-|++|+..|+ .. +.-+.|.+
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT-
T ss_pred CeecccccceecCCChHHHHHhhc
Confidence 477889988883 33 34466654
Done!