RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy63
(585 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 136 bits (344), Expect = 2e-37
Identities = 67/214 (31%), Positives = 89/214 (41%), Gaps = 32/214 (14%)
Query: 251 TFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTG 308
+ + G P Y C CG+ + +L H R HTG
Sbjct: 2 SEFGSSSSVAQAA--------------LEPGEKP-YACPECGKSFSRSDHLAEHQRTHTG 46
Query: 309 EKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKN 368
EK Y C CGK F H TH+ + ++C C K F+ A LR H+R H T
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGE-- 103
Query: 369 MIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFY 428
KPY C CG S L H R HTGEK Y C +CG SF++ +L
Sbjct: 104 ------------KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT 151
Query: 429 HKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHT 462
H+ +H+ + C CGK++ + L H THT
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 133 bits (337), Expect = 2e-36
Identities = 75/222 (33%), Positives = 99/222 (44%), Gaps = 43/222 (19%)
Query: 296 RTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGL 355
++ GEK Y C CGK F + S H L
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSR-SDH---------------------------L 37
Query: 356 REHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
EH+R H T K PY+C CG S KK L H R HTGEK Y C +
Sbjct: 38 AEHQRTH-TGEK--------------PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE 82
Query: 416 CGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKE 475
CG SF+Q A+L H+ +H+ + C CGK++ HLR+H THT ++ Y C CGK
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 476 FMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
F + + L +H TH +P+ C C F + L+ H RTH
Sbjct: 143 FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 129 bits (327), Expect = 5e-35
Identities = 69/195 (35%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C CGK F L EH HT ++P+ C C +F KK L +H +
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR------------- 70
Query: 277 NIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
HTG P Y+C CG+ + R NL+ H R HTGEK Y C CGK F Q + H TH
Sbjct: 71 -THTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 335 SESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSS 394
+ + ++C C K F+ L H+R H T KPY+C CG S
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTH-TGE--------------KPYKCPECGKSFSR 173
Query: 395 KKSLDDHYRIHTGEK 409
+ +L+ H R HTG+K
Sbjct: 174 RDALNVHQRTHTGKK 188
Score = 118 bits (299), Expect = 4e-31
Identities = 69/227 (30%), Positives = 96/227 (42%), Gaps = 48/227 (21%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
S + + EK Y C C K F R+ +L H + H + ++C CGK+F+D ++
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDL 65
Query: 147 KVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCG-NTYKNPKALTSHI 205
H R HTGEK Y C CG SF+ +L H +HT G Y
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT---------GEKPYA--------- 107
Query: 206 RNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C CGK F L+ H HT ++P+ C C +F + +L H +
Sbjct: 108 -----------CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-- 154
Query: 266 LKMENHLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEK 310
HTG P Y+C CG+ + R L VH R HTG+K
Sbjct: 155 ------------THTGEKP-YKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 117 bits (295), Expect = 2e-30
Identities = 57/173 (32%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 393 SSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPN 452
S + GEK Y C +CG SF++ L H+ +H+ + C CGK++ +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 453 HLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQ 512
L H THT ++ Y C CGK F + L++H TH +P+ C C F HL
Sbjct: 64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 513 HHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
H RTH T E + ++C C ++F NL H R HTGEK Y
Sbjct: 124 HQRTH----TGE----------KPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 102 bits (257), Expect = 2e-25
Identities = 64/181 (35%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
YAC ECGKSF L H+ H G++ C CG+++ K L +H + H+ G+K
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHT---GEK- 76
Query: 62 AIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHI 121
YKCP+C + ++H H EK Y C C K F + +L H
Sbjct: 77 -----------PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH- 124
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSH 181
+ H + ++C CGK+F+ N+ H R HTGEK Y C CG SF+ +LNVH +H
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 182 T 182
T
Sbjct: 185 T 185
Score = 94.0 bits (235), Expect = 2e-22
Identities = 59/199 (29%), Positives = 83/199 (41%), Gaps = 18/199 (9%)
Query: 45 SLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFC 104
S + G+K Y CP+C H H EK Y C
Sbjct: 8 SSVAQAALEP---GEK------------PYACPECGKSFSRSDHLAEHQRTHTGEKPYKC 52
Query: 105 HICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETC 164
C K F ++L H + H + ++C CGK+F+ N++ H R HTGEK Y C C
Sbjct: 53 PECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 165 GASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKE 223
G SF+ L H +HT + + C CG ++ L +H R +HT + C CGK
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKS 170
Query: 224 FRMKRQLKEHMAVHTTDRP 242
F + L H HT +
Sbjct: 171 FSRRDALNVHQRTHTGKKT 189
Score = 83.3 bits (207), Expect = 1e-18
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
Y C ECGKSF K L H+ H G++ C CG+++ + +L H + H+ G+K
Sbjct: 50 YKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHT---GEK- 104
Query: 62 AIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHI 121
Y CP+C + ++H H EK Y C C K F R NL H
Sbjct: 105 -----------PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH- 152
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ H + ++C CGK+F+ + VH R HTG+K
Sbjct: 153 QRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 30.1 bits (69), Expect = 1.4
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 545 AFFDVYNLKLHMRIHTGEKKY 565
+ F + + GEK Y
Sbjct: 2 SEFGSSSSVAQAALEPGEKPY 22
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 107 bits (269), Expect = 5e-27
Identities = 56/230 (24%), Positives = 75/230 (32%), Gaps = 56/230 (24%)
Query: 302 HMRNHTGEKKYICEV--CGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHK 359
K+YIC CG + + L+ H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWK----------------------------LQAHL 34
Query: 360 RVHVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQ-- 415
H T K P+ C C G +S L H HTGEK + C
Sbjct: 35 CKH-TGEK--------------PFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 416 CGASFTQWASLFYHKFSHSETRNQ--VCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC-- 469
C FT A++ H + VC + CGK +K N L+ H +HT++ Y C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 470 ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHH-RTHK 518
E C K F LK H H + CS KT +H H+
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 104 bits (261), Expect = 5e-26
Identities = 43/212 (20%), Positives = 66/212 (31%), Gaps = 44/212 (20%)
Query: 233 HMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCN- 287
A+ + ++C+ C + + L+ H HTG P + C
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC--------------KHTGEKP-FPCKE 47
Query: 288 -ICGRVMNDRTNLKVHMRNHTGEKKYICE--VCGKGFVQWSSHYYHMFTHSESRN--FQC 342
C + +L H HTGEK + C+ C F ++ H + + C
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 343 TV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYEC--DTCGHGLSSKKSL 398
C K F L+ H+ H T + PYEC + C S L
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSH-TQQL--------------PYECPHEGCDKRFSLPSRL 152
Query: 399 DDHYRIHTGEKKYVCQQCGASFTQWASLFYHK 430
H ++H G C W H
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 184
Score = 98.4 bits (246), Expect = 6e-24
Identities = 47/212 (22%), Positives = 69/212 (32%), Gaps = 52/212 (24%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCG 192
CG A+ ++ H+ HTGEK + C E C F L HS +HT + F C G
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 193 NTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTT--DRPFVCNM--C 248
C F K +K+H +VC+ C
Sbjct: 80 ---------------------------CDLRFTTKANMKKHFNRFHNIKICVYVCHFENC 112
Query: 249 PSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG-PGYQCN--ICGRVMNDRTNLKVHMRN 305
FK L+ H HT Y+C C + + + LK H +
Sbjct: 113 GKAFKKHNQLKVHQF--------------SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMF-THSE 336
H G + C W+ + H+ H +
Sbjct: 159 HAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 93.8 bits (234), Expect = 3e-22
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 26/177 (14%)
Query: 401 HYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNHLRS 456
+ K+Y+C CGA++ + L H H+ + C C K + + +HL
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 457 HLNTHTKKRLYVCE--TCGKEFMKLELLKSHLTTHLA--ARPFICEF--CSAGFKTKKHL 510
H THT ++ + C+ C F +K H ++C F C FK L
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 511 SQHHRTHKRKDTLENHMKAVHEKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGEKKY 565
H +H T + ++C CD+ F LK H ++H G
Sbjct: 123 KVHQFSH----TQQ----------LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 165
Score = 75.7 bits (187), Expect = 4e-16
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 2 YACE--ECGKSFKTKIQLCAHKELVHEGKQRSVCD--TCGRTYKTKHSLNQHMKIHSDVR 57
Y C +CG ++ +L AH H G++ C C + + + H L +H H+
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT--- 68
Query: 58 GKKNAIHVNNINKKVSYKC--PDCSVIVVSYSGFKSHLDIHNVEKE--YFCHI--CKKVF 111
G+KN + C C + + + K H + + K Y CH C K F
Sbjct: 69 GEKN------------FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116
Query: 112 LRNRNLVCHIKAVHENVREHQCS--VCGKAFADITNMKVHMRIHTGEKKYVCETCGASFA 169
++ L H + H ++C C K F+ + +K H ++H G ++C
Sbjct: 117 KKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 175
Query: 170 LWGSLNVH 177
W H
Sbjct: 176 TWTLYLKH 183
Score = 42.6 bits (101), Expect = 9e-05
Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 24/133 (18%)
Query: 2 YACEE--CGKSFKTKIQLCAHKELVHEGKQRS--VCDT--CGRTYKTKHSLNQHMKIHSD 55
+ C+ C F TK + H + VC CG+ +K + L H H+
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT- 130
Query: 56 VRGKKNAIHVNNINKKVSYKC--PDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLR 113
+ Y+C C S K H +H C V
Sbjct: 131 --QQL------------PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 176
Query: 114 NRNLVCHIKAVHE 126
+ H+ H+
Sbjct: 177 WTLYLKHVAECHQ 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 96.8 bits (242), Expect = 3e-24
Identities = 29/125 (23%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTN 365
+G C C K F+ H H+ + F+C C K + L EH+ +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM- 60
Query: 366 RKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWAS 425
+ + + C C + L H HTGE Y C C F Q
Sbjct: 61 -----------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKD 109
Query: 426 LFYHK 430
L H
Sbjct: 110 LQSHM 114
Score = 94.1 bits (235), Expect = 3e-23
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C C K+F K LK H HT ++PF C C + K++L +H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE-----------ARN 58
Query: 277 NIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHM 331
++ + C++C R L++HM +HTGE Y C C + F+Q HM
Sbjct: 59 CMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 91.4 bits (228), Expect = 3e-22
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH---KFSHSETR 437
EC TC SK L H R HTGEK + C +CG + + +L H + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 438 NQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
CS C +T++ LR H+ +HT + Y C +C ++FM+ K L +H
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ----KKDLQSH 113
Score = 78.3 bits (194), Expect = 1e-17
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNS--H 209
+G C TC F L VH+ HT + F C CG Y + L H + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 210 TIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKME 269
Q C VC + FR + +L+ HM HT + P+ C+ C F KK L+ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH-------- 113
Query: 270 NHLNRHTNIHTG 281
+H+G
Sbjct: 114 -----MIKLHSG 120
Score = 78.3 bits (194), Expect = 1e-17
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCH--IKAVHENVREH 131
+CP C +S K H H EK + C C K + R NL+ H ++ + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 177
CSVC + F +++HM HTGE Y C +C F L H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 74.1 bits (183), Expect = 4e-16
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 96 HNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMR---I 152
+ C C K FL L H H + +C CGK + N+ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 210
+ E+ + C C +F L +H SHT + CS C + K L SH+ H+
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 64.8 bits (159), Expect = 5e-13
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 461 HTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRK 520
+ C TC K+F+ LK H H +PF C C + K++L +H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN--- 58
Query: 521 DTLENHMKAVH--EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++ E+ F C VC F L+LHM HTGE Y
Sbjct: 59 --------CMNRSEQ--VFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Score = 29.8 bits (68), Expect = 1.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEG 27
Y C C + F K L +H +H G
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSG 120
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 96.1 bits (240), Expect = 1e-23
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 47/191 (24%)
Query: 381 KPYECDTCGHGLSSKKSLDDH---YRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETR 437
D C S++ L H IH K++VC G
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG-------------------- 41
Query: 438 NQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPF 495
CS + +K L H+ HT ++ + C E C K + +LE LK+HL +H +P+
Sbjct: 42 ---CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 496 ICEF--CSAGFKTKKHLSQH-HRTHKRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVY 550
+CE CS F ++H +RTH +EK + CK+ C + + D
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTH------------SNEK--PYVCKLPGCTKRYTDPS 144
Query: 551 NLKLHMRIHTG 561
+L+ H++ G
Sbjct: 145 SLRKHVKTVHG 155
Score = 95.4 bits (238), Expect = 3e-23
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 217 CDVCGKEFRMKRQLKEHMA---VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLN 273
D C +EF + QL H+ +H + FVC+ + + + + Y L
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCS-RELRPFKAQY--------MLV 56
Query: 274 RHTNIHTG--PGYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICE--VCGKGFVQWSSH 327
H HTG P ++C C + + NLK H+R+HTGEK Y+CE C K F S
Sbjct: 57 VHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR 115
Query: 328 YYHMF-THSESRNFQCTV--CDKKFATPAGLREHKRVH 362
H THS + + C + C K++ P+ LR+H +
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 88.4 bits (220), Expect = 7e-21
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 48/189 (25%)
Query: 284 YQCNICGRVMNDRTNLKVHMRN---HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNF 340
+ + C + + + L H+ + H K+++C G
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41
Query: 341 QCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDT--CGHGLSSKKSL 398
C+ + F L H R H T K P++C C S ++L
Sbjct: 42 -CSRELRPFKAQYMLVVHMRRH-TGEK--------------PHKCTFEGCRKSYSRLENL 85
Query: 399 DDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKF-SHSETRNQVCSY--CGKTYKNPNH 453
H R HTGEK Y+C+ C +F+ + H+ +HS + VC C K Y +P+
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 454 LRSHLNTHT 462
LR H+ T
Sbjct: 146 LRKHVKTVH 154
Score = 82.3 bits (204), Expect = 1e-18
Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 48/188 (25%)
Query: 132 QCSVCGKAFADITNMKVHM---RIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVC 188
+ C + F + H+ IH K++VC G C
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------------------C 42
Query: 189 SYCGNTYKNPKALTSHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCN 246
S +K L H+R HT + C C K + LK H+ HT ++P++C
Sbjct: 43 SRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 247 --MCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNI--CGRVMNDRTNLK 300
C F +H H+ P Y C + C + D ++L+
Sbjct: 102 HEGCSKAFSNASDRAKH-------------QNRTHSNEKP-YVCKLPGCTKRYTDPSSLR 147
Query: 301 VHMRNHTG 308
H++ G
Sbjct: 148 KHVKTVHG 155
Score = 77.2 bits (191), Expect = 6e-17
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 74 YKCPDCSVIVVSYSGFKSHLD---IHNVEKEYFCHIC-----KKVFLRNRNLVCHIKAVH 125
+ CS S H++ IH KE+ CH + F LV H++ H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 126 ENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCE--TCGASFALWGSLNVHSY-S 180
+ H+C+ C K+++ + N+K H+R HTGEK Y+CE C +F+ H +
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 181 HTNTQ-FVCSY--CGNTYKNPKALTSHIRNSHT 210
H+N + +VC C Y +P +L H++ +
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVK-TVH 154
Score = 71.1 bits (175), Expect = 9e-15
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 28/167 (16%)
Query: 2 YACEECGKSFKTKIQLCAH--KELVHEGKQRSVCDTCG-----RTYKTKHSLNQHMKIHS 54
+ C + F ++ QL H E +H ++ VC G R +K ++ L HM+ H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 55 DVRGKKNAIHVNNINKKVSYKCP--DCSVIVVSYSGFKSHLDIHNVEKEYFCH--ICKKV 110
G+K +KC C K+HL H EK Y C C K
Sbjct: 64 ---GEK------------PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 111 FLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTG 155
F + H H N + + C + C K + D ++++ H++ G
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 48.0 bits (115), Expect = 8e-07
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCD-----RAFF 547
+ CS F +++ L H + +H + ++F C R F
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH-----------IHGERKEFVCHWGGCSRELRPFK 50
Query: 548 DVYNLKLHMRIHTGEKKY 565
Y L +HMR HTGEK +
Sbjct: 51 AQYMLVVHMRRHTGEKPH 68
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 94.4 bits (236), Expect = 2e-23
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 303 MRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+G+K Y C+ CGK F S HM H R + C VC KKF L H ++H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 363 VTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQ 422
KPYEC+ C + S H + + K Y + + T+
Sbjct: 61 TGI---------------KPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Query: 423 WASL 426
+
Sbjct: 104 ASGP 107
Score = 81.7 bits (203), Expect = 4e-19
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIH 279
CGK F K Q HM++H RP+ C +C FK+K HL H K IH
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK--------------IH 60
Query: 280 TG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSS 326
TG P Y+CNIC + R + H + K Y + + S
Sbjct: 61 TGIKP-YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 70.5 bits (174), Expect = 4e-15
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHT 462
+G+K Y C QCG SFT + H H R C CGK +K +HL H+ HT
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 463 KKRLYVCETCGKEFMKLELLKSHLT--THLAARPFICEFCSAGFKTKKHLS 511
+ Y C C K FM + + + S
Sbjct: 62 GIKPYECNICAKRFMW----RDSFHRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 69.0 bits (170), Expect = 2e-14
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 95 IHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHT 154
+ +K Y C C K F H+ +H +R + C VCGK F ++ HM+IHT
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 155 GEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTS 203
G K Y C C F S H + + T+ + + +S
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 64.8 bits (159), Expect = 5e-13
Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 32/125 (25%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCG-NT 194
CGK+F + HM +H G + Y C CG F + L H HT G
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT---------GIKP 65
Query: 195 YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKL 254
Y+ C++C K F + H V + + +
Sbjct: 66 YE--------------------CNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Query: 255 KKHLR 259
Sbjct: 104 ASGPS 108
Score = 63.6 bits (156), Expect = 1e-12
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
S H+ +H + Y C +C K F +LV H+K +H ++ ++C++C K F +
Sbjct: 23 SQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF 81
Query: 147 KVHMRIHTGEKKYVCETCGASFALWGSLN 175
H + + K Y + +
Sbjct: 82 --HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 61.3 bits (150), Expect = 7e-12
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKR 519
+ +LY C+ CGK F H++ HL RP+ C C FK K HL H + H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-- 60
Query: 520 KDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
T + ++C +C + F ++ H + + K Y
Sbjct: 61 --TGI----------KPYECNICAKRF--MWRDSFHRHVTSCTKSY 92
Score = 50.1 bits (121), Expect = 5e-08
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 487 TTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAF 546
+ + + C+ C F K +H H R + C VC + F
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH----LGL----------RPYGCGVCGKKF 47
Query: 547 FDVYNLKLHMRIHTGEKKY 565
++L HM+IHTG K Y
Sbjct: 48 KMKHHLVGHMKIHTGIKPY 66
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 88.3 bits (220), Expect = 2e-21
Identities = 29/145 (20%), Positives = 44/145 (30%), Gaps = 46/145 (31%)
Query: 271 HLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
+ + C CGR NL +H R HT E+ Y C++C K F +
Sbjct: 4 GSSGGRLPSKTKKE-FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH-- 60
Query: 329 YHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTC 388
LR+H+ +H KP++C C
Sbjct: 61 --------------------------LRDHRYIHSKE---------------KPFKCQEC 79
Query: 389 GHGLSSKKSLDDHYRIHTGEKKYVC 413
G G ++L H +H
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 85.6 bits (213), Expect = 2e-20
Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 43/136 (31%)
Query: 298 NLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLRE 357
+K++IC+ CG+ F + + L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYN----------------------------LLI 35
Query: 358 HKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCG 417
H+R H +PY CD C + L DH IH+ EK + CQ+CG
Sbjct: 36 HERTHTDE---------------RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 418 ASFTQWASLFYHKFSH 433
F Q +L HK H
Sbjct: 81 KGFCQSRTLAVHKTLH 96
Score = 80.6 bits (200), Expect = 1e-18
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 368 NMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLF 427
+ + K + C CG + +L H R HT E+ Y C C +F + L
Sbjct: 4 GSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 428 YHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCET 471
H++ HS+ + C CGK + L H H + +
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 79.0 bits (196), Expect = 3e-18
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 230 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCN 287
T + F+C C F +L H + HT P Y C+
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER--------------THTDERP-YTCD 49
Query: 288 ICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
IC + + +L+ H H+ EK + C+ CGKGF Q + H H ++ +
Sbjct: 50 ICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 75.2 bits (186), Expect = 8e-17
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
SG +KE+ C C + F ++ NL+ H + H + R + C +C KAF ++
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHL 61
Query: 147 KVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+ H IH+ EK + C+ CG F +L VH H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 72.5 bits (179), Expect = 8e-16
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 397 SLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRS 456
+K+++C+ CG FT+ +L H+ +H++ R C C K ++ +HLR
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRT 516
H H+K++ + C+ CGK GF + L+ H
Sbjct: 64 HRYIHSKEKPFKCQECGK----------------------------GFCQSRTLAVHKTL 95
Query: 517 H 517
H
Sbjct: 96 H 96
Score = 72.1 bits (178), Expect = 1e-15
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C CG+ F L H HT +RP+ C++C F+ + HLR H
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY------------- 66
Query: 277 NIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
IH+ P ++C CG+ L VH H
Sbjct: 67 -IHSKEKP-FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 69.8 bits (172), Expect = 7e-15
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 453 HLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQ 512
K+ ++C+ CG+ F K L H TH RP+ C+ C F+ + HL
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 513 HHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
H H + E + F+C+ C + F L +H +H
Sbjct: 64 HRYIH----SKE----------KPFKCQECGKGFCQSRTLAVHKTLHMQTSSP 102
Score = 69.0 bits (170), Expect = 1e-14
Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 28/116 (24%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSY 190
C CG+ F N+ +H R HT E+ Y C+ C +F L H Y H+ +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK----- 72
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
+K C CGK F R L H +H
Sbjct: 73 ---PFK--------------------CQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 67.5 bits (166), Expect = 5e-14
Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 16/119 (13%)
Query: 45 SLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFC 104
+ KK + C C H H E+ Y C
Sbjct: 4 GSSGGRLPSK---TKK------------EFICKFCGRHFTKSYNLLIHERTHTDERPYTC 48
Query: 105 HICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
IC K F R +L H + +H + +C CGK F + VH +H +
Sbjct: 49 DICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 41.3 bits (98), Expect = 6e-05
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
Y C+ C K+F+ + L H+ +H ++ C CG+ + +L H +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 89.7 bits (223), Expect = 3e-21
Identities = 40/211 (18%), Positives = 63/211 (29%), Gaps = 62/211 (29%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT-NTQFVCSYCGNT 194
G + I I + ++C +F+ L H ++
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 195 YKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKL 254
+ C GK F+ K +L H+ VHT ++PF C
Sbjct: 63 EE--------------------CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG----- 97
Query: 255 KKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
CG++ NLK+H R HTGEK + C
Sbjct: 98 ----------------------------------CGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 315 EV--CGKGFVQWSSHYYHMFTHSESRNFQCT 343
E C + F S HM H+ ++ +
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 87.7 bits (218), Expect = 1e-20
Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 388 CGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH---------SETRN 438
G K I + + C +F+ L H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFI 496
+ C GK++K L +H+ HT ++ + C CGK F + E LK H TH +PF
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 497 CEF--CSAGFKTKKHLSQHHRTH 517
CEF C F +H H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145
Score = 84.3 bits (209), Expect = 2e-19
Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 25/172 (14%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNR-HTNI 278
G + +Q + C TF L H + H+ N
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME-----HVGGPEQNN 57
Query: 279 HTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEV--CGKGFVQWSSHYYHMFTHSE 336
H +C G+ + L H+R HTGEK + C CGK F + + H TH+
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Query: 337 SRNFQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECD 386
+ F+C CD++FA + ++H VH ++ K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSD---------------KSGPSS 154
Score = 84.3 bits (209), Expect = 2e-19
Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 38/167 (22%)
Query: 91 SHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH--------ENVREHQCSVCGKAFAD 142
S I + C + F LV H+ H +C GK+F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 143 ITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPK 199
+ H+R+HTGEK + C CG FA +L +H +HT + F C + G
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG------- 127
Query: 200 ALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C + F K+HM VHT+D+ +
Sbjct: 128 --------------------CDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 83.1 bits (206), Expect = 6e-19
Identities = 32/167 (19%), Positives = 47/167 (28%), Gaps = 28/167 (16%)
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH---------SESRN 339
G + + C + F H+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDT--CGHGLSSKKS 397
+C K F L H RVH T KP+ C CG + ++
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH-TGE--------------KPFPCPFPGCGKIFARSEN 107
Query: 398 LDDHYRIHTGEKKYVCQ--QCGASFTQWASLFYHKFSHSETRNQVCS 442
L H R HTGEK + C+ C F + H H+ ++ S
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 81.2 bits (201), Expect = 2e-18
Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 34/183 (18%)
Query: 317 CGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSV 376
G + + CD+ F+T L H + +H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH---- 58
Query: 377 HELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ EC G +K L +H R+HTGEK + C G
Sbjct: 59 --VCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG------------------- 97
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCET--CGKEFMKLELLKSHLTTHLAARP 494
CGK + +L+ H THT ++ + CE C + F K H+ H + +
Sbjct: 98 -------CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 495 FIC 497
Sbjct: 151 GPS 153
Score = 77.7 bits (192), Expect = 4e-17
Identities = 45/189 (23%), Positives = 62/189 (32%), Gaps = 41/189 (21%)
Query: 6 ECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHV 65
G S + Q + K + E + +C RT+ T H L H+ +
Sbjct: 2 SSGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH---VGG----- 52
Query: 66 NNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
+ C K F LV HI+ VH
Sbjct: 53 -------PEQNNHV-------------------CYWEECPREGKSFKAKYKLVNHIR-VH 85
Query: 126 ENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET--CGASFALWGSLNVHSYSH 181
+ C CGK FA N+K+H R HTGEK + CE C FA H + H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Query: 182 TNTQ-FVCS 189
T+ + S
Sbjct: 146 TSDKSGPSS 154
Score = 75.4 bits (186), Expect = 3e-16
Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 25/133 (18%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH---------LAARP 494
G + + S + ++C + F + L +H+T
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNL 552
C FK K L H R H T E + F C C + F NL
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH----TGE----------KPFPCPFPGCGKIFARSENL 108
Query: 553 KLHMRIHTGEKKY 565
K+H R HTGEK +
Sbjct: 109 KIHKRTHTGEKPF 121
Score = 68.5 bits (168), Expect = 6e-14
Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 52/170 (30%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGK--------QRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C ++F T +L H + H G C G+++K K+ L H+++H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 54 SDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLR 113
+ G+K + CP C K+F R
Sbjct: 86 T---GEK------------PFPCPFPG--------------------------CGKIFAR 104
Query: 114 NRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC 161
+ NL H + H + +C C + FA+ ++ K HM +HT +K
Sbjct: 105 SENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 82.2 bits (204), Expect = 4e-19
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 30/141 (21%)
Query: 381 KPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+P+ C C L H R HTGEK Y C
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD--------------------- 43
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
C + + + L+ H HT + + C+TC ++F + + LK+H TH +PF C
Sbjct: 44 -----CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 499 F--CSAGFKTKKHLSQHHRTH 517
+ C F L +HH H
Sbjct: 99 WPSCQKKFARSDELVRHHNMH 119
Score = 80.6 bits (200), Expect = 1e-18
Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 271 HLNRHTNIHTG--PGYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSS 326
HL H+ HTG P YQC+ C R + LK H R HTG K + C+ C + F +
Sbjct: 23 HLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 327 HYYHMFTHSESRNFQC--TVCDKKFATPAGLREHKRVH 362
H TH+ + F C C KKFA L H +H
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 74.9 bits (185), Expect = 2e-16
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 44/158 (27%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
+ ++ ++C G C K Y +HL+ H HT ++
Sbjct: 2 SEKRPFMCAYPG--------------------------CNKRYFKLSHLQMHSRKHTGEK 35
Query: 466 LYVCET--CGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTL 523
Y C+ C + F + + LK H H +PF C+ C F HL H RTH T
Sbjct: 36 PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH----TG 91
Query: 524 ENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIH 559
E + F C+ C + F L H +H
Sbjct: 92 E----------KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 68.7 bits (169), Expect = 3e-14
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 467 YVCE--TCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTHKRKDT 522
++C C K + KL L+ H H +P+ C+F C F L +H R H T
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH----T 62
Query: 523 LENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ FQCK C R F +LK H R HTGEK +
Sbjct: 63 GV----------KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 67.9 bits (167), Expect = 4e-14
Identities = 36/187 (19%), Positives = 56/187 (29%), Gaps = 75/187 (40%)
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQ 213
+ ++ ++C C+
Sbjct: 2 SEKRPFMCA----------------------YPGCN------------------------ 15
Query: 214 KSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMENH 271
K + L+ H HT ++P+ C+ C F L++H +
Sbjct: 16 --------KRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-------- 59
Query: 272 LNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEV--CGKGFVQWSSH 327
HTG P +QC C R + +LK H R HTGEK + C C K F +
Sbjct: 60 ------RHTGVKP-FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 328 YYHMFTH 334
H H
Sbjct: 113 VRHHNMH 119
Score = 65.6 bits (161), Expect = 3e-13
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 99 EKEYFC--HICKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHT 154
++ + C C K + + +L H + H + +QC C + F+ +K H R HT
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 155 GEKKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKALTSHIR 206
G K + C+TC F+ L H+ +HT + F C + C + L H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 58.7 bits (143), Expect = 8e-11
Identities = 32/148 (21%), Positives = 43/148 (29%), Gaps = 48/148 (32%)
Query: 34 DTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKC--PDCSVIVVSYSGFKS 91
C + Y L H + H+ G+K Y+C DC K
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHT---GEK------------PYQCDFKDCERRFSRSDQLKR 56
Query: 92 HLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMR 151
H H K + C C + F+ ++K H R
Sbjct: 57 HQRRHTGVKPFQC-----------------------------KTCQRKFSRSDHLKTHTR 87
Query: 152 IHTGEKKYVCET--CGASFALWGSLNVH 177
HTGEK + C C FA L H
Sbjct: 88 THTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 37.5 bits (88), Expect = 0.002
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT--CGRTYKTKHSLNQHMKIH 53
+ C+ C + F L H H G++ C C + + L +H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 36.3 bits (85), Expect = 0.004
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 2 YACE--ECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
Y C+ +C + F QL H+ H G + C TC R + L H + H
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 80.6 bits (200), Expect = 8e-19
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTN 365
+G CE+CGK F H +HS + + C VC +F + H R H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG- 60
Query: 366 RKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHY-RIHTGEK 409
+ KPY C +CG G S L+ H ++H+G
Sbjct: 61 ------------SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 73.3 bits (181), Expect = 3e-16
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS--ETRN 438
C+ CG L+ H H+GEK Y C CG F + + YH SH +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 439 QVCSYCGKTYKNPNHLRSHL-NTHT 462
+C CGK + P+HL H+ H+
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 72.1 bits (178), Expect = 7e-16
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ---FV 187
C +CGK F D+ ++ H H+GEK Y C CG F ++ H SH + ++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 188 CSYCGNTYKNPKALTSHIRNSHT 210
C CG + P L HI+ H+
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHS 90
Score = 66.7 bits (164), Expect = 5e-14
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 96 HNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+ C IC K+F +L H K H + + C VCG F M H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 156 E--KKYVCETCGASFALWGSLNVH 177
K Y+C++CG F+ LN H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGH 84
Score = 64.0 bits (157), Expect = 5e-13
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C++CGK FR L H H+ ++P+ C +C FK K + H +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR------------- 56
Query: 277 NIHTGPG---YQCNICGRVMNDRTNLKVHM-RNHTGEK 310
H G Y C CG+ + +L H+ + H+G
Sbjct: 57 -SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 62.9 bits (154), Expect = 1e-12
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 461 HTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRK 520
+ CE CGK F + L H +H +P+ C C FK K +S H R+H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG- 60
Query: 521 DTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGEK 563
+ + C+ C + F +L H+ ++H+G
Sbjct: 61 -----------SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 60.2 bits (147), Expect = 1e-11
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 39/120 (32%)
Query: 405 HTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKK 464
+G C+ CG F HL H +H+ +
Sbjct: 2 SSGSSGVACEICGKIFRDVY----------------------------HLNRHKLSHSGE 33
Query: 465 RLYVCETCGKEFMKLELLKSHLTTHL------AARPFICEFCSAGFKTKKHLSQH-HRTH 517
+ Y C CG F + K ++ H+ +P+IC+ C GF HL+ H + H
Sbjct: 34 KPYSCPVCGLRFKR----KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 56.7 bits (138), Expect = 2e-10
Identities = 30/131 (22%), Positives = 42/131 (32%), Gaps = 43/131 (32%)
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIH 212
+G CE CG F LN H SH+ + Y
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEK--------PYS---------------- 37
Query: 213 QKSICDVCGKEFRMKRQLKEHMAVHT--TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMEN 270
C VCG F+ K ++ H+ H +P++C C F HL H K
Sbjct: 38 ----CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK------- 86
Query: 271 HLNRHTNIHTG 281
+H+G
Sbjct: 87 ------QVHSG 91
Score = 56.7 bits (138), Expect = 2e-10
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH--ENVREH 131
C C I H H+ EK Y C +C F R + H H + +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPY 66
Query: 132 QCSVCGKAFADITNMKVHM-RIHTGEK 157
C CGK F+ ++ H+ ++H+G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 46.7 bits (112), Expect = 7e-07
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 494 PFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLK 553
CE C F+ HL++H +H + E + + C VC F +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSH----SGE----------KPYSCPVCGLRFKRKDRMS 52
Query: 554 LHMRIHTGEKK 564
H+R H G
Sbjct: 53 YHVRSHDGSVG 63
Score = 44.4 bits (106), Expect = 4e-06
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
ACE CGK F+ L HK L H G++ C CG +K K ++ H++ H GK
Sbjct: 8 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK-- 64
Query: 62 AIHVNNINKKVSYKCPDC 79
Y C C
Sbjct: 65 -----------PYICQSC 71
Score = 40.2 bits (95), Expect = 1e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
C++C + F DVY+L H H+GEK Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPY 36
Score = 37.9 bits (89), Expect = 8e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRS--VCDTCGRTYKTKHSLNQHMK-IHS 54
Y+C CG FK K ++ H H+G +C +CG+ + LN H+K +HS
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 29.4 bits (67), Expect = 0.77
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEG 27
Y C+ CGK F L H + VH G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSG 91
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 80.5 bits (200), Expect = 9e-19
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 46/137 (33%)
Query: 279 HTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSE 336
P ++C +CG+ + + LK HMR HTG K Y C+ C SS
Sbjct: 3 SGSSGP-HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSS---------- 51
Query: 337 SRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKK 396
L +H R+H +P++C C + +
Sbjct: 52 ------------------LNKHLRIHSDE---------------RPFKCQICPYASRNSS 78
Query: 397 SLDDHYRIHTGEKKYVC 413
L H R HTG+
Sbjct: 79 QLTVHLRSHTGDSGPSS 95
Score = 79.0 bits (196), Expect = 3e-18
Identities = 30/89 (33%), Positives = 40/89 (44%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQV 440
P++C+ CG S K L H R HTG K Y C+ C + +SL H HS+ R
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVC 469
C C +N + L HL +HT
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 77.5 bits (192), Expect = 1e-17
Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 43/128 (33%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTN 365
+ CEVCGK F + L+ H R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDK----------------------------LKTHMRCHTGV 34
Query: 366 RKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWAS 425
KPY+C TC + + SL+ H RIH+ E+ + CQ C + +
Sbjct: 35 ---------------KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQ 79
Query: 426 LFYHKFSH 433
L H SH
Sbjct: 80 LTVHLRSH 87
Score = 73.2 bits (181), Expect = 3e-16
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNICGRVMN 294
+ P C +C F K L+ H + HTG P Y+C C
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR--------------CHTGVKP-YKCKTCDYAAA 47
Query: 295 DRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
D ++L H+R H+ E+ + C++C S H+ +H
Sbjct: 48 DSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 72.5 bits (179), Expect = 6e-16
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 96 HNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+ C +C K F R L H++ H V+ ++C C A AD +++ H+RIH+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 156 EKKYVCETCGASFALWGSLNVHSYSHT 182
E+ + C+ C + L VH SHT
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 70.9 bits (175), Expect = 2e-15
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 28/115 (24%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSY 190
H+C VCGK F+ +K HMR HTG K Y C+TC + A SLN H H++ +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER----- 63
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
+K C +C R QL H+ HT D
Sbjct: 64 ---PFK--------------------CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 70.1 bits (173), Expect = 3e-15
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKR 519
+ + CE CGK F + + LK+H+ H +P+ C+ C L++H R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-- 59
Query: 520 KDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ E R F+C++C A + L +H+R HTG+
Sbjct: 60 --SDE----------RPFKCQICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 67.1 bits (165), Expect = 5e-14
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQC 133
+KC C K+H+ H K Y C C + +L H +H + R +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 134 SVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C A + + + VH+R HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 65.5 bits (161), Expect = 2e-13
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 28/113 (24%)
Query: 405 HTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKK 464
+ C+ CG F++ + L++H+ HT
Sbjct: 3 SGSSGPHKCEVCGKCFSR----------------------------KDKLKTHMRCHTGV 34
Query: 465 RLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ Y C+TC L HL H RPF C+ C + L+ H R+H
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 58.6 bits (143), Expect = 4e-11
Identities = 28/162 (17%), Positives = 43/162 (26%), Gaps = 69/162 (42%)
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIH 212
+ CE CG F+ L H HT + YK
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--------PYK---------------- 38
Query: 213 QKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHL 272
C C L +H+ +H+ +RP
Sbjct: 39 ----CKTCDYAAADSSSLNKHLRIHSDERP------------------------------ 64
Query: 273 NRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
++C IC + + L VH+R+HTG+
Sbjct: 65 -----------FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 79.1 bits (196), Expect = 2e-18
Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 39/123 (31%)
Query: 298 NLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLRE 357
+ R HTGEK Y C C K F Q L
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQL----------------------------LDM 33
Query: 358 HKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCG 417
H + + + + + C CG + + ++ H G + G
Sbjct: 34 HFKRYHDP-----------NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG 82
Query: 418 ASF 420
S
Sbjct: 83 PSS 85
Score = 75.3 bits (186), Expect = 5e-17
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 397 SLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQ----VCSYCGKTYKNPN 452
S R HTGEK Y C C +F Q L H + + VCS CGKT+ N
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 453 HLRSHLNTHTKKRLYVCETCGKEF 476
+ H + E G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 73.7 bits (182), Expect = 2e-16
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 19/97 (19%)
Query: 230 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPG-----Y 284
HT ++P+ C+ C TF+ K+ L H+K + P +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK--------------RYHDPNFVPAAF 48
Query: 285 QCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGF 321
C+ CG+ R + H N G E G
Sbjct: 49 VCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 67.2 bits (165), Expect = 3e-14
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 89 FKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH--ENVRE--HQCSVCGKAFADIT 144
S H EK Y C C K F + + L H K + N CS CGK F
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 145 NMKVHMRIHTGEKKYVCETCGASF 168
M H G E G S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 65.6 bits (161), Expect = 1e-13
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 271 HLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGE----KKYICEVCGKGFVQW 324
HTG P Y C+ C + + L +H + + ++C CGK F +
Sbjct: 2 SSGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 325 SSHYYHMFTHSESRNFQCTVCDKKF 349
++ H + +
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 61.4 bits (150), Expect = 3e-12
Identities = 22/108 (20%), Positives = 31/108 (28%), Gaps = 24/108 (22%)
Query: 145 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSH 204
+ R HTGEK Y C C +F L++H + + FV P A
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV----------PAAFV-- 49
Query: 205 IRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTF 252
C CGK F + + H +
Sbjct: 50 ------------CSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 54.1 bits (131), Expect = 1e-09
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 482 LKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV 541
S TH +P+ C C F+ K+ L H + + + F C
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY----HDP------NFVPAAFVCSK 52
Query: 542 CDRAFFDVYNLKLHMRIHTGEKKY 565
C + F + H G
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGV 76
Score = 42.1 bits (100), Expect = 2e-05
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRS----VCDTCGRTYKTKHSLNQHMKIH 53
YAC C K+F+ K L H + + VC CG+T+ ++++ +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 14/55 (25%)
Query: 509 HLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
RTH T E + + C CD+ F L +H + +
Sbjct: 2 SSGSSGRTH----TGE----------KPYACSHCDKTFRQKQLLDMHFKRYHDPN 42
Score = 36.0 bits (84), Expect = 0.003
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 11/79 (13%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSH 92
C C +T++ K L+ H K + D A + C C + H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----------FVCSKCGKTFTRRNTMARH 66
Query: 93 LDIHNVEKEYFCHICKKVF 111
D
Sbjct: 67 ADNCAGPDGVEGENSGPSS 85
Score = 30.2 bits (69), Expect = 0.37
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 551 NLKLHMRIHTGEKKY 565
+ R HTGEK Y
Sbjct: 2 SSGSSGRTHTGEKPY 16
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 76.8 bits (190), Expect = 1e-17
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+QC IC R + +L H+R HTGEK + C++CG+ F + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62
Query: 344 VCDKKFATPAGLREHK---RVH 362
++ + L +
Sbjct: 63 KVEELLSKNYHLENEVARLKKL 84
Score = 69.8 bits (172), Expect = 4e-15
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQ 439
+KP++C C S L H R HTGEK + C CG F + H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPI 59
Query: 440 VCSYCGKTYKNPNHLRSHLN---THT 462
+ + HL + +
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLV 85
Score = 69.4 bits (171), Expect = 6e-15
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFV 187
++ QC +C + F+ ++ H+R HTGEK + C+ CG FA H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 188 CSYCGNTYKNPKALTSHIRNSHT 210
L + +
Sbjct: 61 EDKVEELLSKNYHLENEVARLKK 83
Score = 66.4 bits (163), Expect = 8e-14
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 310 KKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNM 369
K + C +C + F + H+ TH+ + F C +C +KFA + H+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ------- 54
Query: 370 IDHQRSVHELLKPYECDTCGHGLSSKKSLDDH---YRIHTGEK 409
H P D LS L++ + GE+
Sbjct: 55 -------HI--LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 64.8 bits (159), Expect = 2e-13
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENH 526
+ C C + F + + L +H+ TH +PF C+ C F +H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ--------- 54
Query: 527 MKAVHEKIRDFQCKVCDRAFFDVYNLKLH---MRIHTGEK 563
H + Y+L+ ++ GE+
Sbjct: 55 ----HIL--PILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 64.8 bits (159), Expect = 2e-13
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 21/99 (21%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNICGRVMNDRTN 298
+PF C +C F HL H + HTG P + C+ICGR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR--------------THTGEKP-FACDICGRKFARSDE 46
Query: 299 LKVHMRNHTGEKKYICEVCGKGFVQWSS---HYYHMFTH 334
K H + + + + +
Sbjct: 47 RKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 62.9 bits (154), Expect = 1e-12
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C +C + F L H+ HT ++PF C++C F + RH
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS--------------DERKRHR 51
Query: 277 NIHTGPGYQCNICGRVMNDRTNLKVH---MRNHTGEK 310
+I + +++ +L+ ++ GE+
Sbjct: 52 DIQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 62.1 bits (152), Expect = 2e-12
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 100 KEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKY 159
K + C IC + F R+ +L HI+ H + C +CG+ FA K H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 160 VCETCGASFALWGSLNVH 177
+ + + L
Sbjct: 60 LEDKVEELLSKNYHLENE 77
Score = 57.5 bits (140), Expect = 9e-11
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFC 500
C C + + +HL +H+ THT ++ + C+ CG++F + + K H P + +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKV 64
Query: 501 SAGFKTKKHLS---QHHRTH 517
HL +
Sbjct: 65 EELLSKNYHLENEVARLKKL 84
Score = 53.7 bits (130), Expect = 2e-09
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQC 133
++C C +H+ H EK + C IC + F R+ H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPILE 61
Query: 134 SVCGKAF---ADITNMKVHMRIHTGEK 157
+ + N ++ GE+
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 48.3 bits (116), Expect = 2e-07
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
+PF C C F HL+ H RTH T E + F C +C R F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH----TGE----------KPFACDICGRKFARSDER 47
Query: 553 KLHMRIHTGEKKY 565
K H I
Sbjct: 48 KRHRDIQH-ILPI 59
Score = 32.5 bits (75), Expect = 0.066
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSL---NQHMKIH 53
+AC+ CG+ F + H++ + + D + L +K
Sbjct: 32 FACDICGRKFARSDERKRHRD-IQHIL-PILEDKVEELLSKNYHLENEVARLKKL 84
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 76.8 bits (190), Expect = 4e-17
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEF--CS 501
C K +++ + +R HL+TH + ++VC CGK F++ LK H H +PF C F C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 502 AGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIH 559
F +L H R H T + R + C C++ F NLK H+ H
Sbjct: 72 KRFSLDFNLRTHVRIH----TGD----------RPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 560 TGEKKY 565
K
Sbjct: 118 AKAKNN 123
Score = 74.5 bits (184), Expect = 2e-16
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 271 HLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEV--CGKGFVQWSSHY 328
+ +H + H + C CG+ + + LK H HTGEK + C CGK F +
Sbjct: 22 AMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 329 YHMFTHSESRNFQCTV--CDKKFATPAGLREHKRVH 362
H+ H+ R + C C+KKFA L+ H H
Sbjct: 82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 73.7 bits (182), Expect = 5e-16
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 340 FQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKS 397
C C K F + +R+H H + + C CG
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH--------------GP--RVHVCAECGKAFVESSK 49
Query: 398 LDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSETRNQVCSY--CGKTYKNPNH 453
L H +HTGEK + C + CG F+ +L H H+ R VC + C K + +
Sbjct: 50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 454 LRSHLNTHTKKRLY 467
L+SH+ TH K +
Sbjct: 110 LKSHILTHAKAKNN 123
Score = 73.7 bits (182), Expect = 5e-16
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 35/143 (24%)
Query: 381 KPYECDT--CGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+ C C ++ H H G + +VC +CG +F + +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESS-------------- 48
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFI 496
L+ H HT ++ + C E CGK F L++H+ H RP++
Sbjct: 49 --------------KLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 497 CEF--CSAGFKTKKHLSQHHRTH 517
C F C+ F +L H TH
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTH 117
Score = 69.5 bits (171), Expect = 2e-14
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 99 EKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 156
+ C C K+F N + H+ R H C+ CGKAF + + +K H +HTGE
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP--RVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 157 KKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHTIHQ 213
K + C E CG F+L +L H HT + +VC +
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF----------------------- 97
Query: 214 KSICDVCGKEFRMKRQLKEHMAVHTTDRPF 243
D C K+F LK H+ H +
Sbjct: 98 ----DGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 68.3 bits (168), Expect = 3e-14
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 27/130 (20%)
Query: 191 CGNTYKNPKALTSHIRNSHTIH-QKS-ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNM- 247
C +++ A+ H+ H + +C CGK F +LK H VHT ++PF C
Sbjct: 13 CTKMFRDNSAMRKHLH----THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 248 -CPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNI--CGRVMNDRTNLKVH 302
C F L +LR H + IHTG P Y C C + TNLK H
Sbjct: 69 GCGKRFSLDFNLRTHVR--------------IHTGDRP-YVCPFDGCNKKFAQSTNLKSH 113
Query: 303 MRNHTGEKKY 312
+ H K
Sbjct: 114 ILTHAKAKNN 123
Score = 66.0 bits (162), Expect = 2e-13
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 36 CGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDI 95
C + ++ ++ +H+ H G + + C +C V S K H +
Sbjct: 13 CTKMFRDNSAMRKHLHTH----GPR------------VHVCAECGKAFVESSKLKRHQLV 56
Query: 96 HNVEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMR 151
H EK + C C K F + NL H++ +H R + C C K FA TN+K H+
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 152 IHTGEKKY 159
H K
Sbjct: 116 THAKAKNN 123
Score = 61.0 bits (149), Expect = 1e-11
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 469 CETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMK 528
+ C K F ++ HL TH R +C C F L +H H T E
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH----TGE---- 60
Query: 529 AVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
+ FQC C + F +NL+ H+RIHTG++ Y
Sbjct: 61 ------KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Score = 49.4 bits (119), Expect = 2e-07
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 493 RPFICEF--CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
R C C+ F+ + +H TH + C C +AF +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRV---------------HVCAECGKAFVESS 48
Query: 551 NLKLHMRIHTGEKKY 565
LK H +HTGEK +
Sbjct: 49 KLKRHQLVHTGEKPF 63
Score = 41.7 bits (99), Expect = 7e-05
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT--CGRTYKTKHSLNQHMKIHSDVRGK 59
+ C ECGK+F +L H+ LVH G++ C CG+ + +L H++IH+ G
Sbjct: 35 HVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT---GD 90
Query: 60 KNAIHVNNINKKVSYKCP--DCSVIVVSYSGFKSHLDIHNVEKEY 102
+ Y CP C+ + KSH+ H K
Sbjct: 91 R------------PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 74.8 bits (185), Expect = 9e-17
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
Y C + C R + +L H+R HTG+K + C +C + F + H+ TH+ + F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 342 CTVCDKKFATPAGLREHKRVH 362
C +C +KFA + H ++H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 73.7 bits (182), Expect = 2e-16
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 271 HLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
L RH IHTG P +QC IC R + +L H+R HTGEK + C++CG+ F +
Sbjct: 21 SLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 329 YHMFTH 334
H H
Sbjct: 80 RHTKIH 85
Score = 71.0 bits (175), Expect = 2e-15
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 98 VEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+E+ Y C + C + F ++ +L HI+ +H + QC +C + F+ ++ H+R HTG
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 156 EKKYVCETCGASFALWGSLNVHSYSHT 182
EK + C+ CG FA H+ H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHL 86
Score = 68.3 bits (168), Expect = 2e-14
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 467 YVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLE 524
Y C E+C + F + L H+ H +PF C C F HL+ H RTH T E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----TGE 60
Query: 525 NHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C +C R F K H +IH +K
Sbjct: 61 ----------KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 68.3 bits (168), Expect = 2e-14
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 30/111 (27%)
Query: 381 KPYECDT--CGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+PY C C S SL H RIHTG+K + C+ C +F++
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR---------------- 46
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+HL +H+ THT ++ + C+ CG++F + + K H H
Sbjct: 47 ------------SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 64.8 bits (159), Expect = 3e-13
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAG 503
C + + L H+ HT ++ + C C + F + + L +H+ TH +PF C+ C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 504 FKTKKHLSQHHRTH 517
F +H + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 62.5 bits (153), Expect = 1e-12
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 28/103 (27%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTY 195
C + F+ ++ H+RIHTG+K + C C +F+ L H +HT + +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK--------PF 63
Query: 196 KNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 238
CD+CG++F + K H +H
Sbjct: 64 A--------------------CDICGRKFARSDERKRHTKIHL 86
Score = 62.5 bits (153), Expect = 2e-12
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 340 FQCTV--CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKS 397
+ C V CD++F+ L H R+H T +K P++C C S
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIH-TGQK--------------PFQCRICMRNFSRSDH 49
Query: 398 LDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
L H R HTGEK + C CG F + H H
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 59.0 bits (144), Expect = 2e-11
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
H+ IH +K + C IC + F R+ +L HI+ H + C +CG+ FA
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDER 78
Query: 147 KVHMRIHTGEK 157
K H +IH +K
Sbjct: 79 KRHTKIHLRQK 89
Score = 50.5 bits (122), Expect = 3e-08
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 493 RPFICEF--CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 550
RP+ C C F L++H R H T + + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIH----TGQ----------KPFQCRICMRNFSRSD 48
Query: 551 NLKLHMRIHTGEKKY 565
+L H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63
Score = 49.8 bits (120), Expect = 5e-08
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 191 CGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPS 250
C + +LT HIR HT + C +C + F L H+ HT ++PF C++C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 251 TFKLKKHLRQHYKVH 265
F ++H K+H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 42.1 bits (100), Expect = 2e-05
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C C ++F L H H G++ CD CGR + +H KIH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.7 bits (99), Expect = 3e-05
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGK 59
YAC E C + F L H +H G++ C C R + L H++ H+ G+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT---GE 60
Query: 60 KNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKE 101
K + C C K H IH +K+
Sbjct: 61 K------------PFACDICGRKFARSDERKRHTKIHLRQKD 90
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 72.5 bits (179), Expect = 4e-16
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ C ICG+ + L H+ H+ + Y C+ CGK F Q S H F H+ + +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 344 VCDKKFATPAGLREHKRVH 362
VC K F+ + L H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 67.1 bits (165), Expect = 3e-14
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 YFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ C IC K F R+ L H +H + R + C CGK F ++MK H IHTGEK + C
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 162 ETCGASFALWGSLNVHSYSHT 182
+ CG +F+ +L HS HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 67.1 bits (165), Expect = 3e-14
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLD 399
F C +C K F + L H +H +PY C CG K +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDT---------------RPYPCQYCGKRFHQKSDMK 46
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
H IHTGEK + CQ CG +F+Q ++L H H
Sbjct: 47 KHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 65.5 bits (161), Expect = 1e-13
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 243 FVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNICGRVMNDRTNLK 300
F C +C +FK L H IH+ P Y C CG+ + ++++K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL--------------IHSDTRP-YPCQYCGKRFHQKSDMK 46
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
H HTGEK + C+VCGK F Q S+ H H
Sbjct: 47 KHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 64.4 bits (158), Expect = 3e-13
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C +CGK F+ L H+ +H+ RP+ C C F K +++H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF------------- 50
Query: 277 NIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTG 308
IHTG P ++C +CG+ + +NL H R HTG
Sbjct: 51 -IHTGEKP-HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 62.8 bits (154), Expect = 9e-13
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 32/107 (29%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCS 442
++C CG +L H IH+ + Y CQ CG F Q + + H F
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF----------- 50
Query: 443 YCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
HT ++ + C+ CGK F + S+L TH
Sbjct: 51 -----------------IHTGEKPHKCQVCGKAFSQ----SSNLITH 76
Score = 57.0 bits (139), Expect = 1e-10
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENH 526
+ C+ CGK F + L +HL H RP+ C++C F K + +H H T E
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH----TGE-- 55
Query: 527 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG 561
+ +C+VC +AF NL H R HTG
Sbjct: 56 --------KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 56.3 bits (137), Expect = 2e-10
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 73 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQ 132
S+ C C S +HL IH+ + Y C C K F + ++ H +H + H+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK 59
Query: 133 CSVCGKAFADITNMKVHMRIHTG 155
C VCGKAF+ +N+ H R HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 52.4 bits (127), Expect = 5e-09
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 56/134 (41%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYC 191
C +CGK+F + + H+ IH+ + Y C+ YC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQ---------------------------YC 35
Query: 192 GNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPST 251
GK F K +K+H +HT ++P C +C
Sbjct: 36 -----------------------------GKRFHQKSDMKKHTFIHTGEKPHKCQVCGKA 66
Query: 252 FKLKKHLRQHYKVH 265
F +L H + H
Sbjct: 67 FSQSSNLITHSRKH 80
Score = 44.7 bits (107), Expect = 2e-06
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 497 CEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHM 556
C+ C FK LS H H + R + C+ C + F ++K H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIH----SDT----------RPYPCQYCGKRFHQKSDMKKHT 49
Query: 557 RIHTGEKKY 565
IHTGEK +
Sbjct: 50 FIHTGEKPH 58
Score = 41.3 bits (98), Expect = 4e-05
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKN 61
+ C+ CGKSFK L H L+H + C CG+ + K + +H IH+ G+K
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT---GEK- 56
Query: 62 AIHVNNINKKVSYKCPDC 79
+KC C
Sbjct: 57 -----------PHKCQVC 63
Score = 40.9 bits (97), Expect = 6e-05
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
Y C+ CGK F K + H +H G++ C CG+ + +L H + H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 37.0 bits (87), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F CK+C ++F L H+ IH+ + Y
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPY 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 71.1 bits (175), Expect = 2e-15
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 418 ASFTQWASLFYHKFSHSETRNQVCS--YCGKTYKNPNHLRSHLNTHTKKRLYVC--ETCG 473
S + H C C K Y +HL++HL THT ++ Y C E C
Sbjct: 1 GSSGSSGPDLEKRRIH------YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCD 54
Query: 474 KEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
F + + L H H A+PF C C+ F HL+ H + H
Sbjct: 55 WRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 62.6 bits (153), Expect = 2e-12
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 459 NTHTKKRLYVCE--TCGKEFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHH 514
K+R++ C+ C K + K LK+HL TH +P+ C E C F L++H+
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 515 RTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 560
R H T + FQC VC+R+F +L LHM+ H
Sbjct: 68 RKH----TGA----------KPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 59.6 bits (145), Expect = 2e-11
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 89 FKSHLDIHNVEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADIT 144
S + ++C C KV+ ++ +L H++ H + ++C+ C FA
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSD 61
Query: 145 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 183
+ H R HTG K + C C SF+ L +H H N
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 55.7 bits (135), Expect = 4e-10
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 271 HLNRHTNIHTG--PGYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSS 326
HL H HTG P Y+C C L H R HTG K + C VC + F +
Sbjct: 32 HLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH 90
Query: 327 HYYHMFTH 334
HM H
Sbjct: 91 LALHMKRH 98
Score = 55.7 bits (135), Expect = 5e-10
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 381 KPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVC--QQCGASFTQWASLFYHKFSHSET 436
+ + CD C + L H R HTGEK Y C + C F + L H H+
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHT 462
+ C C +++ +HL H+ H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 54.9 bits (133), Expect = 1e-09
Identities = 33/114 (28%), Positives = 40/114 (35%), Gaps = 32/114 (28%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNT 184
R H C C K + +++K H+R HTGEK Y C E C FA
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA--------------- 58
Query: 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 238
LT H R HT + C VC + F L HM H
Sbjct: 59 ------------RSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 34.9 bits (81), Expect = 0.011
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSD 55
Y C E C F +L H H G + C C R++ L HMK H +
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 33.4 bits (77), Expect = 0.033
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 46/121 (38%)
Query: 36 CGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDI 95
C + Y L H++ H+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTG---------------------------------------- 42
Query: 96 HNVEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIH 153
EK Y C C F R+ L H + H + QC VC ++F+ ++ +HM+ H
Sbjct: 43 ---EKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Query: 154 T 154
Sbjct: 99 Q 99
Score = 33.4 bits (77), Expect = 0.034
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 531 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
EK R C C + + +LK H+R HTGEK Y
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY 46
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 69.0 bits (170), Expect = 6e-15
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 268 MENHLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWS 325
M +H + H+++ P Y+C+ C + NL H HTGEK Y C +CG F + +
Sbjct: 1 MGHHHHHHSHMTHSDKP-YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Query: 326 SHYYHMFTH 334
+ H H
Sbjct: 60 NLKTHTRIH 68
Score = 64.8 bits (159), Expect = 2e-13
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 368 NMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLF 427
+ H + KPY+CD C K +L H +HTGEK Y C CGA F + A+L
Sbjct: 4 HHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 428 YHKFSH 433
H H
Sbjct: 63 THTRIH 68
Score = 64.0 bits (157), Expect = 3e-13
Identities = 26/114 (22%), Positives = 34/114 (29%), Gaps = 43/114 (37%)
Query: 298 NLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLRE 357
+ H +K Y C+ C F + L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGN----------------------------LAS 35
Query: 358 HKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
HK VH KPY C+ CG + +L H RIH+GEK Y
Sbjct: 36 HKTVHTGE---------------KPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 60.5 bits (148), Expect = 5e-12
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 226 MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PG 283
M H + +D+P+ C+ C ++F+ K +L H +HTG P
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT--------------VHTGEKP- 45
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKY 312
Y+CNICG N NLK H R H+GEK Y
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 59.0 bits (144), Expect = 2e-11
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
++C C +F N+ H +HTGEK Y C CGA F +L H+ H+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 58.2 bits (142), Expect = 4e-11
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
H + + +K Y C C+ F NL H K VH + ++C++CG F N+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 147 KVHMRIHTGEKKY 159
K H RIH+GEK Y
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 54.8 bits (133), Expect = 6e-10
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 34/98 (34%)
Query: 392 LSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNP 451
+ H + +K Y C +C ASF
Sbjct: 1 MGH--HHHHHSHMTHSDKPYKCDRCQASFRY----------------------------K 30
Query: 452 NHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+L SH HT ++ Y C CG +F + ++L TH
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNR----PANLKTH 64
Score = 54.0 bits (131), Expect = 1e-09
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 482 LKSHLT----THLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDF 537
+ H + +P+ C+ C A F+ K +L+ H H T E + +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH----TGE----------KPY 46
Query: 538 QCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+C +C F NLK H RIH+GEK Y
Sbjct: 47 RCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 52.5 bits (127), Expect = 3e-09
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 453 HLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQ 512
H H + + Y C+ C F L SH T H +P+ C C A F +L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 513 HHRTH 517
H R H
Sbjct: 64 HTRIH 68
Score = 49.8 bits (120), Expect = 4e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 145 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSH 204
+ H + +K Y C+ C ASF G+L H HT + Y+
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK--------PYR-------- 47
Query: 205 IRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 243
C++CG +F LK H +H+ ++P+
Sbjct: 48 ------------CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 45.9 bits (110), Expect = 8e-07
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 201 LTSHIRNSHTIH--QKS-ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKH 257
+ H + + K CD C FR K L H VHT ++P+ CN+C + F +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 258 LRQHYKVH 265
L+ H ++H
Sbjct: 61 LKTHTRIH 68
Score = 41.3 bits (98), Expect = 3e-05
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
Y C+ C SF+ K L +HK VH G++ C+ CG + +L H +IH
Sbjct: 18 YKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 67.2 bits (165), Expect = 4e-14
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICE 498
+ CGKTY +HL++HL THT ++ Y C + CG +F + + L H H RPF C+
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 499 FCSAGFKTKKHLSQHHRTH 517
C F HL+ H + H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 60.2 bits (147), Expect = 9e-12
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 461 HTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHHRTHK 518
T CGK + K LK+HL TH +P+ C + C F L++H+R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH- 60
Query: 519 RKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
T R FQC+ CDRAF +L LHM+ H
Sbjct: 61 ---TGH----------RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 59.5 bits (145), Expect = 2e-11
Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 26/114 (22%)
Query: 377 HELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSET 436
+ CG + L H R HTGEK Y C G
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG------------------- 42
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
CG + + L H HT R + C+ C + F + + L H+ H
Sbjct: 43 -------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 57.5 bits (140), Expect = 9e-11
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 96 HNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIH 153
C K + ++ +L H++ H + + C CG FA + H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 154 TGEKKYVCETCGASFALWGSLNVHSYSH 181
TG + + C+ C +F+ L +H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.2 bits (134), Expect = 5e-10
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNI--CGRV 292
T C T+ HL+ H + HTG P Y C+ CG
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR--------------THTGEKP-YHCDWDGCGWK 46
Query: 293 MNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
L H R HTG + + C+ C + F + HM H
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.2 bits (134), Expect = 7e-10
Identities = 32/142 (22%), Positives = 41/142 (28%), Gaps = 54/142 (38%)
Query: 125 HENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNT 184
+ CGK + +++K H+R HTGEK Y
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH------------------------ 37
Query: 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFV 244
C + G CG +F +L H HT RPF
Sbjct: 38 ---CDWDG---------------------------CGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 245 CNMCPSTFKLKKHLRQHYKVHL 266
C C F HL H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 54.5 bits (132), Expect = 1e-09
Identities = 32/130 (24%), Positives = 42/130 (32%), Gaps = 45/130 (34%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTN 365
T CGK + + SSH L+ H R H
Sbjct: 2 RTATHTCDYAGCGKTYTK-SSH---------------------------LKAHLRTHTGE 33
Query: 366 RKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQW 423
KPY CD CG + L HYR HTG + + CQ+C +F++
Sbjct: 34 ---------------KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRS 78
Query: 424 ASLFYHKFSH 433
L H H
Sbjct: 79 DHLALHMKRH 88
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 531 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
C + + +LK H+R HTGEK Y
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY 36
Score = 32.9 bits (76), Expect = 0.049
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKC--PDCSVI 82
CG+TY L H++ H+ G+K Y C C
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHT---GEK------------PYHCDWDGCGWK 46
Query: 83 VVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIK 122
H H + + C C + F R+ +L H+K
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 28.3 bits (64), Expect = 1.9
Identities = 18/81 (22%), Positives = 22/81 (27%), Gaps = 29/81 (35%)
Query: 2 YACEECGKSFKTKIQLCAHK------------------------ELV-----HEGKQRSV 32
CGK++ L AH EL H G +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 33 CDTCGRTYKTKHSLNQHMKIH 53
C C R + L HMK H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 66.8 bits (164), Expect = 4e-14
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 96 HNVEKEYFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCS--VCGKAFADITNMKVHMR 151
+ C C ++F + L H K H + + C CGK+F ++K HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 152 IHTGEKKYVCETCGASF 168
+H+ + Y+CE G S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 62.2 bits (152), Expect = 2e-12
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 20/91 (21%)
Query: 237 HTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCN--ICG 290
+ C+ C F +++L H K H + C CG
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKY-------------QHIHQKS-FSCPEPACG 47
Query: 291 RVMNDRTNLKVHMRNHTGEKKYICEVCGKGF 321
+ N + +LK HM+ H+ + YICE G
Sbjct: 48 KSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 59.9 bits (146), Expect = 1e-11
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 405 HTGEKKYVC--QQCGASFTQWASLFYHK-FSHSETRNQVCSY--CGKTYKNPNHLRSHLN 459
+G C CG F+ L +HK + H ++ C CGK++ HL+ H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 460 THTKKRLYVCETCGKEF 476
H+ R Y+CE G
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 59.9 bits (146), Expect = 1e-11
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 46/119 (38%)
Query: 306 HTGEKKYICEV--CGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHV 363
+G C+ CG+ F
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQ-------------------------------------- 23
Query: 364 TNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASF 420
+ H++ H K + C CG + KK L +H ++H+ + Y+C+ G S
Sbjct: 24 ----YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 51.4 bits (124), Expect = 1e-08
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 27/102 (26%)
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIH 212
+G C+ G CG + N + L H + H
Sbjct: 2 SSGSSGMPCDFPG-------------------------CGRIFSNRQYLNHHKKYQHIHQ 36
Query: 213 QKSICD--VCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTF 252
+ C CGK F K+ LKEHM +H+ R ++C +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 46.0 bits (110), Expect = 8e-07
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 19/91 (20%)
Query: 461 HTKKRLYVC--ETCGKEFMKLELLKSHL-TTHLAARPFICEF--CSAGFKTKKHLSQHHR 515
+ C CG+ F + L H H+ + F C C F KKHL +H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 516 THKRKDTLENHMKAVHEKIRDFQCKVCDRAF 546
H + RD+ C+ +
Sbjct: 62 LH----SDT----------RDYICEFSGPSS 78
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 493 RPFICEF--CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCK--VCDRAFFD 548
C+F C F +++L+ H + H + F C C ++F
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKY-------------QHIHQKSFSCPEPACGKSFNF 52
Query: 549 VYNLKLHMRIHTGEKKY 565
+LK HM++H+ + Y
Sbjct: 53 KKHLKEHMKLHSDTRDY 69
Score = 42.2 bits (100), Expect = 2e-05
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCD--TCGRTYKTKHSLNQHMKIHSDVR 57
C CG+ F + L HK+ H ++ C CG+++ K L +HMK+HS
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS--- 64
Query: 58 GKKNAIHVNNINKKVSYKCPDC 79
+ Y C
Sbjct: 65 DTR------------DYICEFS 74
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 66.4 bits (163), Expect = 5e-14
Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 42/115 (36%)
Query: 298 NLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLRE 357
+ R H+GEK Y C +C F Q + ++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGT----------------------------MKM 33
Query: 358 HKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYR-IHTGEKKY 411
H T E + + C C ++ K L H R H+
Sbjct: 34 HILQKHT-------------ENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 64.5 bits (158), Expect = 2e-13
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 271 HLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGE--KKYICEVCGKGFVQWSS 326
H+G P Y+C IC +K+H+ E K+ C C + S
Sbjct: 2 SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 327 HYYHM 331
H+
Sbjct: 61 LGVHL 65
Score = 64.1 bits (157), Expect = 3e-13
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 145 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ---FVCSYCGNTYKNPKAL 201
+ R H+GEK Y C C A F G++ +H F C +C L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 202 TSHIRNSHT 210
H+R H+
Sbjct: 62 GVHLRKQHS 70
Score = 60.6 bits (148), Expect = 6e-12
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 90 KSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH--ENVREHQCSVCGKAFADITNMK 147
S H+ EK Y C+IC F ++ + HI ENV + C C A +++
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 148 VHMR-IHTGEKKY 159
VH+R H+
Sbjct: 63 VHLRKQHSYSGPS 75
Score = 60.6 bits (148), Expect = 6e-12
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 482 LKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV 541
S TH +P+ C C A F + H E + F C
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK------------HTENVAKFHCPH 50
Query: 542 CDRAFFDVYNLKLHMR-IHTGEKKY 565
CD +L +H+R H+
Sbjct: 51 CDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 59.1 bits (144), Expect = 2e-11
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 397 SLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQV--CSYCGKTYKNPNHL 454
S R H+GEK Y C C A FTQ ++ H C +C + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 455 RSHL-NTHT 462
HL H+
Sbjct: 62 GVHLRKQHS 70
Score = 58.3 bits (142), Expect = 3e-11
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGE--KKYVCETCGASFALWGSLNVH 177
++C +C F MK+H+ E K+ C C A L VH
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 230 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPG---YQC 286
H+ ++P+ C +C + F + H + C
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQS--------------GTMKMHILQKHTENVAKFHC 48
Query: 287 NICGRVMNDRTNLKVHMRN-HTGEKKY 312
C V+ +++L VH+R H+
Sbjct: 49 PHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 53.7 bits (130), Expect = 1e-09
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGE--KKYVCQQCGASFTQWASLFYH 429
R H KPYEC C + ++ H E K+ C C + + L H
Sbjct: 6 SGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 52.9 bits (128), Expect = 3e-09
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 453 HLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL--AARPFICEFCSAGFKTKKHL 510
S TH+ ++ Y C C F + +K H+ F C C K L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 511 SQHHRTH 517
H R
Sbjct: 62 GVHLRKQ 68
Score = 44.0 bits (105), Expect = 4e-06
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 201 LTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT--TDRPFVCNMCPSTFKLKKHL 258
S R +H+ + C +C F +K H+ F C C + K L
Sbjct: 3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 259 RQH 261
H
Sbjct: 62 GVH 64
Score = 36.7 bits (86), Expect = 0.002
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSV--CDTCGRTYKTKHSLNQHM-KIHS 54
Y C C F + H L + + C C K L H+ K HS
Sbjct: 16 YECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 31.7 bits (73), Expect = 0.085
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 551 NLKLHMRIHTGEKKY 565
+ R H+GEK Y
Sbjct: 2 SSGSSGRTHSGEKPY 16
Score = 31.3 bits (72), Expect = 0.10
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 14/71 (19%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSH 92
C C + ++ H+ K + CP C ++ S H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAK-------------FHCPHCDTVIARKSDLGVH 64
Query: 93 L-DIHNVEKEY 102
L H+
Sbjct: 65 LRKQHSYSGPS 75
Score = 29.4 bits (67), Expect = 0.50
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEG 27
+ C C K L H H
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSY 71
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 65.5 bits (161), Expect = 1e-13
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 368 NMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLF 427
+ + + Y+CD CG S L H R HTGEK Y C +CG +F Q + L
Sbjct: 5 SSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 428 YHKFSH 433
H H
Sbjct: 64 GHHRVH 69
Score = 63.2 bits (155), Expect = 5e-13
Identities = 24/114 (21%), Positives = 34/114 (29%), Gaps = 43/114 (37%)
Query: 298 NLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLRE 357
+ ++Y C+ CGK F S L +
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSD----------------------------LSK 36
Query: 358 HKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
H+R H KPY+CD CG + L H+R+HTG
Sbjct: 37 HRRTHTGE---------------KPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 63.2 bits (155), Expect = 6e-13
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 271 HLNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
R Y+C+ CG+ + ++L H R HTGEK Y C+ CGK F+Q S
Sbjct: 5 SSGRSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 329 YHMFTH 334
H H
Sbjct: 64 GHHRVH 69
Score = 56.7 bits (138), Expect = 1e-10
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
+ Y C C K F + +L H + H + ++C CGKAF +++
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 147 KVHMRIHTGEKKY 159
H R+HTG
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 56.3 bits (137), Expect = 2e-10
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 17/86 (19%)
Query: 229 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQC 286
R + C+ C +F L +H + HTG P Y+C
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR--------------THTGEKP-YKC 49
Query: 287 NICGRVMNDRTNLKVHMRNHTGEKKY 312
+ CG+ R++L H R HTG
Sbjct: 50 DECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 54.8 bits (133), Expect = 5e-10
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
++C CGK+F+ +++ H R HTGEK Y C+ CG +F L H HT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 53.2 bits (129), Expect = 2e-09
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 32/93 (34%)
Query: 397 SLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRS 456
S ++Y C +CG SF+ + L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSS----------------------------DLSK 36
Query: 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
H THT ++ Y C+ CGK F++ +SHL H
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQ----RSHLIGH 65
Score = 49.7 bits (120), Expect = 4e-08
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 482 LKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV 541
R + C+ C F LS+H RTH T E + ++C
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH----TGE----------KPYKCDE 51
Query: 542 CDRAFFDVYNLKLHMRIHTGEKKY 565
C +AF +L H R+HTG
Sbjct: 52 CGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 44.4 bits (106), Expect = 3e-06
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 30/100 (30%)
Query: 145 NMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNT-YKNPKALTS 203
+ ++Y C+ CG SF+ L+ H +HT G YK
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT---------GEKPYK------- 48
Query: 204 HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 243
CD CGK F + L H VHT P
Sbjct: 49 -------------CDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 43.6 bits (104), Expect = 6e-06
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
CD CGK F L +H HT ++P+ C+ C F + HL H++VH
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 14/57 (24%)
Query: 509 HLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ R ++C C ++F +L H R HTGEK Y
Sbjct: 5 SSGRSEWQQ----RER----------RRYKCDECGKSFSHSSDLSKHRRTHTGEKPY 47
Score = 38.6 bits (91), Expect = 3e-04
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
Y C+ECGKSF L H+ H G++ CD CG+ + + L H ++H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 65.2 bits (160), Expect = 1e-13
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 370 IDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH 429
+H KPY C CG S L H R+HTGEK Y C +CG +F+Q + L H
Sbjct: 3 SGSSG-IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 430 KFSHS 434
+ H+
Sbjct: 62 QRIHT 66
Score = 60.9 bits (149), Expect = 4e-12
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 272 LNRHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYY 329
+ + IH+G P Y C CG+ + + L H R HTGEK Y C CGK F Q S
Sbjct: 2 SSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 330 HMFTHS 335
H H+
Sbjct: 61 HQRIHT 66
Score = 60.6 bits (148), Expect = 5e-12
Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 43/113 (38%)
Query: 299 LKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREH 358
H+GEK Y C CGK F + S
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSS--------------------------------- 28
Query: 359 KRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
++ HQR VH KPY+C CG S L +H RIHT
Sbjct: 29 ---------ILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 59.0 bits (144), Expect = 2e-11
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 88 GFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMK 147
G IH+ EK Y C C K F R+ LV H + VH + ++C CGKAF+ + +
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 148 VHMRIHTGEKKY 159
H RIHT
Sbjct: 60 NHQRIHTSGPSS 71
Score = 57.5 bits (140), Expect = 6e-11
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 398 LDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSH 457
IH+GEK Y C +CG +F++ + L H+ H+ + C CGK + + L +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 458 LNTHT 462
HT
Sbjct: 62 QRIHT 66
Score = 56.7 bits (138), Expect = 1e-10
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 17/85 (20%)
Query: 230 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCN 287
+H+ ++P+ C C F L QH + +HTG P Y+C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR--------------VHTGEKP-YKCL 46
Query: 288 ICGRVMNDRTNLKVHMRNHTGEKKY 312
CG+ + + L H R HT
Sbjct: 47 ECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 55.2 bits (134), Expect = 4e-10
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+ C CGKAF+ + + H R+HTGEK Y C CG +F+ L H HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 50.5 bits (122), Expect = 2e-08
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 482 LKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV 541
H +P+ C C F L QH R H T E + ++C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH----TGE----------KPYKCLE 47
Query: 542 CDRAFFDVYNLKLHMRIHTGEKKY 565
C +AF L H RIHT
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPSS 71
Score = 45.5 bits (109), Expect = 1e-06
Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 28/95 (29%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNS 208
IH+GEK Y C CG +F+ L H HT + YK
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK--------PYK------------ 44
Query: 209 HTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 243
C CGK F L H +HT+
Sbjct: 45 --------CLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 44.8 bits (107), Expect = 2e-06
Identities = 18/64 (28%), Positives = 25/64 (39%)
Query: 454 LRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQH 513
H+ ++ Y C CGK F + +L H H +P+ C C F L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 514 HRTH 517
R H
Sbjct: 62 QRIH 65
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C CGK F L +H VHT ++P+ C C F L H ++H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.5 bits (96), Expect = 5e-05
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
Y C ECGK+F L H+ VH G++ C CG+ + L H +IH+
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 64.8 bits (159), Expect = 2e-13
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
P +C C + SSK +L H RIH ++ + C C Q ++L H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 61.4 bits (150), Expect = 3e-12
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
CS C + + +++H RIH ++ + C C +L+ H
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 61.0 bits (149), Expect = 3e-12
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 279 HTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ P +C+ C + + L++H R H ++ + C C Q S+ HM
Sbjct: 4 GSSGHP-EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 43/108 (39%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHV 363
+ + C C ++ LR H+R+H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAA----------------------------LRIHERIHC 33
Query: 364 TNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
T+ +P++C+ C +L H + G+
Sbjct: 34 TD---------------RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Score = 54.4 bits (132), Expect = 7e-10
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 235 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNICGRV 292
+ ++ P C+ C + K LR H + IH P ++CN C
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER--------------IHCTDRP-FKCNYCSFD 46
Query: 293 MNDRTNLKVHMRNHTGEKKY 312
+NL HM+ G+
Sbjct: 47 TKQPSNLSKHMKKFHGDMSG 66
Score = 53.7 bits (130), Expect = 1e-09
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHT 462
+ C +C S + A+L H+ H R C+YC K P++L H+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 53.3 bits (129), Expect = 2e-09
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 488 THLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFF 547
+ + P C CS +K L H R H + R F+C C
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIH----CTD----------RPFKCNYCSFDTK 48
Query: 548 DVYNLKLHMRIHTGEKKY 565
NL HM+ G+
Sbjct: 49 QPSNLSKHMKKFHGDMSG 66
Score = 51.7 bits (125), Expect = 5e-09
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 96 HNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+ C C L H + +H R +C+ C +N+ HM+ G
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 156 EKKY 159
+
Sbjct: 63 DMSG 66
Score = 49.8 bits (120), Expect = 3e-08
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C C K L+ H +H TDRPF CN C K +L +H K
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 46.3 bits (111), Expect = 4e-07
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ + C C L+ H H RPF C +CS K +LS+H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 43.3 bits (103), Expect = 5e-06
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 28/88 (31%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 210
+ C C S + +L +H H + +K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDR--------PFK-------------- 39
Query: 211 IHQKSICDVCGKEFRMKRQLKEHMAVHT 238
C+ C + + L +HM
Sbjct: 40 ------CNYCSFDTKQPSNLSKHMKKFH 61
Score = 42.5 bits (101), Expect = 1e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
C EC S +K L H+ +H + C+ C K +L++HMK
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 64.0 bits (156), Expect = 3e-13
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSES---RNFQCTVCDKKFATPAGLREHKRVH 362
+G CE+CG Q +S +H H+E+ F C C K+F P + H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 62.8 bits (153), Expect = 8e-13
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHT---GEKKYICEVCGKGFVQWSSHYYHMFTHSESRNF 340
QC ICG + +L H R H ++ CE CGK F + S H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 341 QCTVCDKK 348
Sbjct: 68 APQESSGP 75
Score = 62.4 bits (152), Expect = 1e-12
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHT---GEKKYVCQQCGASFTQWASLFYH-KFSHSET 436
+C+ CG K SL+ H R H ++ C+ CG F + S+ H SH
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 437 RNQVCSYCGKT 447
G +
Sbjct: 66 LLAPQESSGPS 76
Score = 62.4 bits (152), Expect = 1e-12
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHT---GEKKYVCETCGASFALWGSLNVHSYSH 181
QC +CG ++ H R H ++ CE CG F S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 60.5 bits (147), Expect = 7e-12
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 405 HTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQ---VCSYCGKTYKNPNHLRSHLNTH 461
+G C+ CG + Q ASL +H+ H+ET C +CGK ++ P+ + +H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 462 TKKRLYVCETCGK 474
L +
Sbjct: 62 HPALLLAPQESSG 74
Score = 56.6 bits (137), Expect = 1e-10
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ----FVCSYCGNTYKNPKALTSHIRNS 208
+G CE CG + SLN H H T F C +CG ++ P ++ +H S
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 209 HTIHQKSICDVCGKEF 224
H + + G
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 54.7 bits (132), Expect = 6e-10
Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 12/77 (15%)
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLD 399
QC +C A L H+R H + C+ CG S+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAA------------LRFPCEFCGKRFEKPDSVA 55
Query: 400 DHYRIHTGEKKYVCQQC 416
H Q+
Sbjct: 56 AHRSKSHPALLLAPQES 72
Score = 53.2 bits (128), Expect = 2e-09
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTT---DRPFVCNMCPSTFKLKKHLRQHYKVH 265
C++CG R K L H H F C C F+ + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 51.3 bits (123), Expect = 1e-08
Identities = 14/79 (17%), Positives = 20/79 (25%), Gaps = 11/79 (13%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
CE C + K L+ H R H F C+ C + F ++
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVA-----------ALRFPCEFCGKRFEKPDSV 54
Query: 553 KLHMRIHTGEKKYLSMRMS 571
H S
Sbjct: 55 AAHRSKSHPALLLAPQESS 73
Score = 50.9 bits (122), Expect = 1e-08
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 461 HTKKRLYVCETCGKEFMKLELLKSHLTTH---LAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ CE CG + L H H +AA F CEFC F+ ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 50.1 bits (120), Expect = 3e-08
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIK--AVHENVREHQCSVCGKAFADITNMKVHMRIHTGE 156
C IC + +L H + A C CGK F ++ H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 157 KKYVC-ETCGASFA 169
E+ G S
Sbjct: 65 LLLAPQESSGPSSG 78
Score = 48.9 bits (117), Expect = 8e-08
Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 10/83 (12%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDR 296
+ C +C T + K L H + H + C CG+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK----------HAETVAALRFPCEFCGKRFEKP 51
Query: 297 TNLKVHMRNHTGEKKYICEVCGK 319
++ H +
Sbjct: 52 DSVAAHRSKSHPALLLAPQESSG 74
Score = 45.9 bits (109), Expect = 8e-07
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKEL--VHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
CE CG + + K L H+ R C+ CG+ ++ S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 44.7 bits (106), Expect = 2e-06
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 40/109 (36%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSH 92
C+ CG T + K SLN H + H++
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVA---------------------------------- 35
Query: 93 LDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFA 141
+ C C K F + ++ H H + G +
Sbjct: 36 ------ALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRT 39
+ CE CGK F+ + AH+ H + ++ G +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPS 76
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 59.4 bits (145), Expect = 9e-12
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHK 430
+ + C+ C + ++ L HYR HT EK Y C C +FT+ L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 54.4 bits (132), Expect = 5e-10
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHS 178
C VC +AFA ++K H R HT EK Y C C +F L H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 52.5 bits (127), Expect = 3e-09
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSS 326
+ C +C R + +LK H R+HT EK Y C +C + F +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDL 45
Score = 47.1 bits (113), Expect = 2e-07
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 552
R F+CE C+ F ++HL +H+R+H T E + + C +C+RAF L
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH----TNE----------KPYPCGLCNRAFTRRDLL 46
Query: 553 KLHM-RIHTGEK 563
H +IH+G
Sbjct: 47 IRHAQKIHSGNL 58
Score = 45.6 bits (109), Expect = 6e-07
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 100 KEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHM-RIHTGEK 157
+ + C +C + F R +L H + H N + + C +C +AF + H +IH+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 44.8 bits (107), Expect = 1e-06
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 18/73 (24%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCNICGRVMNDRTN 298
R FVC +C F ++HL++HY+ HT P Y C +C R R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR--------------SHTNEKP-YPCGLCNRAFTRRDL 45
Query: 299 LKVHM-RNHTGEK 310
L H + H+G
Sbjct: 46 LIRHAQKIHSGNL 58
Score = 43.2 bits (103), Expect = 5e-06
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHY-KVH 265
C+VC + F + LK H HT ++P+ C +C F + L +H K+H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.9 bits (102), Expect = 7e-06
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
VC C + + HL+ H +HT ++ Y C C + F + + L H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR----RDLLIRH 49
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 310 KKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREH-KRVH 362
+ ++CEVC + F + H +H+ + + C +C++ F L H +++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 38.6 bits (91), Expect = 2e-04
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F C+VC RAF +LK H R HT EK Y
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPY 31
Score = 34.4 bits (80), Expect = 0.006
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHM-KIHS 54
+ CE C ++F + L H H ++ C C R + + L +H KIHS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 32.1 bits (74), Expect = 0.040
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 74 YKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
+ C C+ K H H EK Y C +C + F R L+ H + +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 31.7 bits (73), Expect = 0.052
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 157 KKYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIRNSHT 210
+ +VCE C +FA L H SHTN + + C C + L H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEG 27
Y C C ++F + L H + +H G
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 59.6 bits (145), Expect = 2e-11
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 440 VCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPF 495
VC + CGK +K N L+ H +HT++ Y C E C K F LK H H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 496 ICEFCSAGFKTKKHLSQHH-RTH 517
+ CS KT +H H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
Score = 56.5 bits (137), Expect = 2e-10
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTHSESRN 339
Y C+ CG+ LKVH +HT + Y C E C K F S H H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 340 FQCTVCDKKFATPAGLREH-KRVH 362
+ C T +H H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 54.5 bits (132), Expect = 1e-09
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 131 HQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHT-NTQ 185
+ C CGKAF +KVH HT + Y C E C F+L L H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 186 FVCSYCGNTYKNPKALTSHIRNSH 209
C K H+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 52.6 bits (127), Expect = 5e-09
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 270 NHLNRHTNIHTG-PGYQCN--ICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSS 326
N L H HT Y+C C + + + LK H + H G + C W+
Sbjct: 17 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 76
Query: 327 HYYHM 331
+ H+
Sbjct: 77 YLKHV 81
Score = 51.9 bits (125), Expect = 9e-09
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 102 YFCHI--CKKVFLRNRNLVCHIKAVHENVREHQCSV--CGKAFADITNMKVHMRIHTGEK 157
Y CH C K F ++ L H H ++C C K F+ + +K H ++H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 158 KYVCETCGASFALWGSLNVH 177
++C W H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKH 80
Score = 46.8 bits (112), Expect = 4e-07
Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 17/87 (19%)
Query: 345 CDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECD--TCGHGLSSKKSLDDHY 402
C K F L+ H+ H T PYEC C S L H
Sbjct: 9 CGKAFKKHNQLKVHQFSH-TQ--------------QLPYECPHEGCDKRFSLPSRLKRHE 53
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYH 429
++H G C W H
Sbjct: 54 KVHAGYPCKKDDSCSFVGKTWTLYLKH 80
Score = 46.1 bits (110), Expect = 9e-07
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 383 YECDT--CGHGLSSKKSLDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRN 438
Y C CG L H HT + Y C C F+ + L H+ H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 439 QVCSYCGKTYKNPNHLRSH 457
+ C K H
Sbjct: 62 KKDDSCSFVGKTWTLYLKH 80
Score = 43.8 bits (104), Expect = 6e-06
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 21/100 (21%)
Query: 466 LYVC--ETCGKEFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHHRTHKRKD 521
+YVC E CGK F K LK H +H P+ C E C F L +H + H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH---- 56
Query: 522 TLENHMKAVHEKIRDFQCKVCDRAF--FDVYNLKLHMRIH 559
+ C + +Y LK H
Sbjct: 57 ----------AGYPCKKDDSCSFVGKTWTLY-LKHVAECH 85
Score = 42.2 bits (100), Expect = 2e-05
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMENHLNRHTN 277
CGK F+ QLK H HT P+ C C F L L++H K
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-------------- 54
Query: 278 IHTG-PGYQCNICGRVMNDRTNLKVHMR 304
+H G P + + C V T H+
Sbjct: 55 VHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 39.5 bits (93), Expect = 2e-04
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 18/75 (24%)
Query: 495 FICEF--CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVY 550
++C F C FK L H +H T + ++C CD+ F
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH----TQQ----------LPYECPHEGCDKRFSLPS 47
Query: 551 NLKLHMRIHTGEKKY 565
LK H ++H G
Sbjct: 48 RLKRHEKVHAGYPCK 62
Score = 31.4 bits (72), Expect = 0.13
Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 74 YKC--PDCSVIVVSYSGFKSHLDIHNVEKEYFCH--ICKKVFLRNRNLVCHIKAVHENVR 129
Y C +C ++ K H H + Y C C K F L H K VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 130 EHQCSVCGKAFADITNMKVHMR 151
+ C T H+
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVA 82
Score = 31.1 bits (71), Expect = 0.18
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMK 51
Y C E C K F +L H++ VH G D+C KT +H+
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 30.7 bits (70), Expect = 0.27
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCD--TCGRTYKTKHSLNQHMKIHSDVRGKK 60
E CGK+FK QL H+ H + C C + + L +H K+H+ KK
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Score = 29.9 bits (68), Expect = 0.39
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 17/95 (17%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKC--PDCSVIVVSYSGFK 90
+ CG+ +K + L H H+ + Y+C C S K
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHT---QQL------------PYECPHEGCDKRFSLPSRLK 50
Query: 91 SHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
H +H C V + H+ H
Sbjct: 51 RHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 60.2 bits (145), Expect = 2e-11
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 393 SSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN-----QVCSYCGKT 447
SS S + I TG K+ C+ C A++ L H R+ + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 448 YKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
L +++ C CG F L+ L H+
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 58.6 bits (141), Expect = 9e-11
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 144 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTS 203
++ K++ I TG K+ C+ C A++ L VH + + N +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 204 HIR-----NSHTIHQKSICDVCGKEFRMKRQLKEHMA 235
+ C CG F + L HM
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 53.6 bits (128), Expect = 5e-09
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 10/122 (8%)
Query: 296 RTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGL 355
++ K++ TG K+ C+ C + HM R+ D
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD-DNHETDNNNPKRWSK 62
Query: 356 REHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
+ + K + K +C CGH S + L H +K
Sbjct: 63 PRKRSLLEMEGK---------EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
Query: 416 CG 417
G
Sbjct: 114 SG 115
Score = 48.2 bits (114), Expect = 3e-07
Identities = 17/111 (15%), Positives = 26/111 (23%), Gaps = 8/111 (7%)
Query: 229 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNI 288
K + ++ T F C C + + L H H N
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET--------GHYRDDNHETDNNNP 57
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRN 339
+ +L +K C CG F HM +
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 47.1 bits (111), Expect = 8e-07
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 85 SYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHE----NVREHQCSVCGKAF 140
S S K + I ++ C C + L H+ N + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 141 ADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVH 177
++ +K C CG SF L+VH
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 42.8 bits (100), Expect = 2e-05
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 482 LKSHLTTHLAARPFICEFCSAGFKTKKHLSQH-----HRTHKRKDTLEN----------- 525
K + + A F C+ CSA + T L+ H H +T N
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 526 ---HMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR 557
M+ + + +C C +F + +L +HM
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 39.0 bits (90), Expect = 7e-04
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 10/99 (10%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIV 83
+ G + C C Y T L HM H + N + +
Sbjct: 13 IFTGASKFRCKDCSAAYDTLVELTVHMNETG---------HYRDDNHE-TDNNNPKRWSK 62
Query: 84 VSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIK 122
+ +K C C F ++L H+
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 35.1 bits (80), Expect = 0.012
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 57 RGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDI-----HNVEKEYFCHICKKVF 111
G ++ + ++C DCS + H++ + + + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 112 LRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMR 151
R R+L+ + + + +C CG +F + ++ VHM
Sbjct: 63 PRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 29.3 bits (65), Expect = 1.4
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 2 YACEECGKSFKTKIQLCAH-KELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKK 60
+ C++C ++ T ++L H E H D +K +++ +K
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Score = 27.8 bits (61), Expect = 3.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 528 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI 558
++ F+CK C A+ + L +HM
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNE 41
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 56.0 bits (136), Expect = 1e-10
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 278 IHTG--PGYQCNICGRVMNDRTNLKVHMRN--HTGEKKYICEVCGKGFVQWSSHYYHMFT 333
G Y+C +C RV +N H K Y C C K F + + H+
Sbjct: 4 TKEGEHT-YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 334 H 334
Sbjct: 63 I 63
Score = 54.1 bits (131), Expect = 7e-10
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHK--FSHSETRNQVCSYCGKTYKNPNHLRSHLNT 460
GE Y C+ C +T ++ H + C +C K + +++ +H+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 461 HTK 463
K
Sbjct: 63 IHK 65
Score = 54.1 bits (131), Expect = 8e-10
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHYYHMFT--HSESRNFQCTVCDKKFATPAGLREHKRV 361
GE Y C+VC + + S+ H T + + C C K+F + H ++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 362 H 362
Sbjct: 63 I 63
Score = 52.6 bits (127), Expect = 3e-09
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 121 IKAVHENVREHQCSVCGKAFADITNMKVHMRI--HTGEKKYVCETCGASFALWGSLNVHS 178
++ E ++C VC + + I+N H K Y C C F ++ H
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 179 YSHT 182
Sbjct: 61 KIIH 64
Score = 52.2 bits (126), Expect = 3e-09
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 95 IHNVEKEYFCHICKKVFLRNRNLVCHIK-AVHENVREHQCSVCGKAFADITNMKVHMRIH 153
E Y C +C +V+ N H + NV+ + C C K F NM H++I
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 154 TG 155
Sbjct: 64 HK 65
Score = 51.8 bits (125), Expect = 6e-09
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTT--HLAARPFICEFCSAGFKTKKHLSQHHRTH 517
T + Y C+ C + + + H T + + C FC F K +++ H +
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 518 KR 519
+
Sbjct: 64 HK 65
Score = 48.7 bits (117), Expect = 6e-08
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 488 THLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFF 547
T + C+ CS + + +H+ T ++ + C C + F
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTS------------HKRNVKVYPCPFCFKEFT 51
Query: 548 DVYNLKLHMRIHTG 561
N+ H++I
Sbjct: 52 RKDNMTAHVKIIHK 65
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 217 CDVCGKEFRMKRQLKEHM--AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 268
C VC + + H + + + C C F K ++ H K+ K+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 44.5 bits (106), Expect = 2e-06
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 13/75 (17%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGL 392
T ++C VC + + + H +K Y C C
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSH-------------KRNVKVYPCPFCFKEF 50
Query: 393 SSKKSLDDHYRIHTG 407
+ K ++ H +I
Sbjct: 51 TRKDNMTAHVKIIHK 65
Score = 44.1 bits (105), Expect = 2e-06
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPG-YQCNICGRVMND 295
+ + C +C + + +HY T+ Y C C +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYV------------TSHKRNVKVYPCPFCFKEFTR 52
Query: 296 RTNLKVHMRNHTG 308
+ N+ H++
Sbjct: 53 KDNMTAHVKIIHK 65
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ---FVCSYCGNTYKNPKALTSHIRN 207
GE Y C+ C + + H + + C +C + +T+H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 208 SHTI 211
H I
Sbjct: 63 IHKI 66
Score = 42.5 bits (101), Expect = 9e-06
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 2 YACEECGKSFKTKIQLCAHK-ELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDV 56
Y C+ C + + C H + C C + + K ++ H+KI +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 527 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI--HTGEKKY 565
M+ E ++CKVC R + + N H K Y
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVY 41
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 55.9 bits (135), Expect = 3e-10
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 453 HLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEF--CSAGFKTKK 508
++ R ++C CGK + K LK+H TH +PF C + C F
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 509 HLSQHHRTH 517
LS+H RTH
Sbjct: 64 ELSRHRRTH 72
Score = 48.2 bits (115), Expect = 1e-07
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 125 HENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYS 180
+R H CS CGK + +++K H R HTGEK + C + C FA L+ H +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 181 H 181
H
Sbjct: 72 H 72
Score = 45.5 bits (108), Expect = 9e-07
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 296 RTNLKVHMRNHTGEKKYICEV--CGKGFVQWSSHYYHMFTHSESRNFQCTV--CDKKFAT 351
+ + + + +IC CGK + + S H TH+ + F C+ C+++FA
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 352 PAGLREHKRVH 362
L H+R H
Sbjct: 62 SDELSRHRRTH 72
Score = 44.7 bits (106), Expect = 2e-06
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 429 HKFSHSETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKS 484
+ S R+ +CS+ CGKTY +HL++H THT ++ + C + C + F + + L
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 485 HLTTH 489
H TH
Sbjct: 68 HRRTH 72
Score = 37.4 bits (87), Expect = 9e-04
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 202 TSHIRNSHTIHQKS---ICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNM--CPSTFKL 254
+S + IC CGK + LK H HT ++PF C+ C F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 255 KKHLRQHYKVH 265
L +H + H
Sbjct: 62 SDELSRHRRTH 72
Score = 35.8 bits (83), Expect = 0.003
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 374 RSVHELLKPYECDTCGHGLSSKKS--LDDHYRIHTGEKKYVCQQ--CGASFTQWASLFYH 429
+ ++ + C G G + KS L H R HTGEK + C C F + L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 430 KFSH 433
+ +H
Sbjct: 69 RRTH 72
Score = 35.8 bits (83), Expect = 0.003
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 531 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
+IR C C + +F +LK H R HTGEK +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPF 48
Score = 30.0 bits (68), Expect = 0.35
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 147 KVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCSY--CGNTYKNPKAL 201
+ + ++C CG ++ L H+ +HT + F CS+ C + L
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 202 TSHIR 206
+ H R
Sbjct: 66 SRHRR 70
Score = 27.0 bits (60), Expect = 4.2
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 21/86 (24%)
Query: 227 KRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--P 282
+ R +C+ C T+ HL+ HT HTG P
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLK--------------AHTRTHTGEKP 47
Query: 283 GYQCNI--CGRVMNDRTNLKVHMRNH 306
+ C+ C R L H R H
Sbjct: 48 -FSCSWKGCERRFARSDELSRHRRTH 72
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.4 bits (134), Expect = 3e-10
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 452 NHLRSHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKH 509
N+L +++ + Y C E+C + F + + L H+ H +PF C C F H
Sbjct: 7 NNLLNYVVPKMRP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 510 LSQHHRTH 517
L+ H RTH
Sbjct: 65 LTTHIRTH 72
Score = 48.8 bits (117), Expect = 7e-08
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 270 NHLNRHTNIHTGPGYQCNI--CGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSH 327
N+L + P Y C + C R + L H+R HTG+K + C +C + F +
Sbjct: 7 NNLLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 328 YYHMFTHS 335
H+ TH+
Sbjct: 66 TTHIRTHT 73
Score = 48.1 bits (115), Expect = 1e-07
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 136 CGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
C + F+ + H+RIHTG+K + C C +F+ L H +HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 46.5 bits (111), Expect = 4e-07
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 475 EFMKLELLKSHLTTHLAARPFIC--EFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHE 532
E + L +++ RP+ C E C F L++H R H
Sbjct: 2 EPHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTG------------- 46
Query: 533 KIRDFQCKVCDRAFFDVYNLKLHMRIHT 560
+ FQC++C R F +L H+R HT
Sbjct: 47 -QKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 46.5 bits (111), Expect = 4e-07
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 298 NLKVHMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGL 355
NL ++ + Y C E C + F + H+ H+ + FQC +C + F+ L
Sbjct: 8 NLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 356 REHKRVH 362
H R H
Sbjct: 66 TTHIRTH 72
Score = 43.4 bits (103), Expect = 6e-06
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 26/98 (26%)
Query: 392 LSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNP 451
+ + + + Y C C + +
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVES--------------------------CDRRFSRS 34
Query: 452 NHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+ L H+ HT ++ + C C + F + + L +H+ TH
Sbjct: 35 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.7 bits (101), Expect = 1e-05
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 203 SHIRNSHTIHQKS-ICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLR 259
+++ N + C V C + F +L H+ +HT +PF C +C F HL
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 260 QHYKVH 265
H + H
Sbjct: 67 THIRTH 72
Score = 33.8 bits (78), Expect = 0.014
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 518 KRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
+ L N++ + + C V CDR F L H+RIHTG+K +
Sbjct: 4 HPMNNLLNYVV-PKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPF 50
Score = 32.7 bits (75), Expect = 0.036
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 2 YAC--EECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
YAC E C + F +L H +H G++ C C R + L H++ H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.9 bits (73), Expect = 0.076
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 32/96 (33%)
Query: 145 NMKVHMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALT 202
N+ ++ + Y C E+C F+ L T
Sbjct: 8 NLLNYVV--PKMRPYACPVESCDRRFSRSDEL---------------------------T 38
Query: 203 SHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 238
HIR HT + C +C + F L H+ HT
Sbjct: 39 RHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.0 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 90 KSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIK 122
H+ IH +K + C IC + F R+ +L HI+
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 53.7 bits (130), Expect = 7e-10
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 375 SVHELLKPYECDTCGHGLSSKKSLDDHY-RIHTGEKKYVCQQCGASFTQ 422
S + KPY C +CG G S L+ H ++HT E+ + CQ + +
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 49.5 bits (119), Expect = 2e-08
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 121 IKAVHENVREHQCSVCGKAFADITNMKVHM-RIHTGEKKYVCETCGASFA 169
+ + + C CGK F+ ++ H+ ++HT E+ + C+ + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 49.1 bits (118), Expect = 4e-08
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 91 SHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFAD 142
S +V K Y C C K F R +L HIK VH + R H+C V +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 47.6 bits (114), Expect = 1e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHM-FTHSESRNFQCTVCDKKFAT 351
+ + K YIC+ CGKGF + H+ H+ R +C V ++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 42.6 bits (101), Expect = 7e-06
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 29/77 (37%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHL-N 459
+ K Y+CQ CG F++ P+HL H+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSR----------------------------PDHLNGHIKQ 34
Query: 460 THTKKRLYVCETCGKEF 476
HT +R + C+
Sbjct: 35 VHTSERPHKCQVWVSGP 51
Score = 40.3 bits (95), Expect = 4e-05
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 208 SHTIHQKSICDVCGKEFRMKRQLKEHM-AVHTTDRPFVCNMCPSTF 252
S ++ + IC CGK F L H+ VHT++RP C + S
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 39.9 bits (94), Expect = 6e-05
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAA-----RPFICEFCSAGFKT 506
S ++ + + Y+C++CGK F + HL H+ RP C+ +G +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSR----PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 39.9 bits (94), Expect = 6e-05
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 40/89 (44%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRV 292
+ + +P++C C F HL H K
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK----------------------------- 33
Query: 293 MNDRTNLKVHMRNHTGEKKYICEVCGKGF 321
+ HT E+ + C+V G
Sbjct: 34 -----------QVHTSERPHKCQVWVSGP 51
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKT 42
Y C+ CGK F L H + VH ++ C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYS-HTNTQ-FVCSYCG 192
+ K Y+C++CG F+ LN H HT+ + C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 35.2 bits (82), Expect = 0.003
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCD 543
S ++ +P+IC+ C GF HL+ H+K VH R +C+V
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNG-------------HIKQVHTSERPHKCQVWV 48
Query: 544 RAF 546
Sbjct: 49 SGP 51
Score = 32.6 bits (75), Expect = 0.029
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 528 KAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGEKKY 565
+ + + C+ C + F +L H+ ++HT E+ +
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH 42
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 54.2 bits (130), Expect = 2e-09
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 95 IHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQ--------CSVCGKAFADITNM 146
I + C + F LV H+ H E C GK+F +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 147 KVHMRIHTGEKKYVC 161
H+R+HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 45.0 bits (106), Expect = 3e-06
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVC--------GKEFRMKRQLKEHMAV 236
C T+ L +H+ H + VC GK F+ K +L H+ V
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 237 HTTDRPFVC 245
HT ++
Sbjct: 85 HTGEKSGPS 93
Score = 42.3 bits (99), Expect = 3e-05
Identities = 16/84 (19%), Positives = 21/84 (25%), Gaps = 14/84 (16%)
Query: 236 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQC-----NICG 290
+ C TF L H H + C G
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVT---------MEHVGGPEQNNHVCYWEECPREG 69
Query: 291 RVMNDRTNLKVHMRNHTGEKKYIC 314
+ + L H+R HTGEK
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 42.3 bits (99), Expect = 3e-05
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGL 392
+ CD+ F+T L H + +H EC G
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV------CYWEECPREGKSF 72
Query: 393 SSKKSLDDHYRIHTGEKKYVC 413
+K L +H R+HTGEK
Sbjct: 73 KAKYKLVNHIRVHTGEKSGPS 93
Score = 41.9 bits (98), Expect = 3e-05
Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 488 THLAARPFICEFCSAGFKTKKHLSQH-HRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAF 546
A + C F T L H H NH +C ++F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH------VCYWEECPREGKSF 72
Query: 547 FDVYNLKLHMRIHTGEK 563
Y L H+R+HTGEK
Sbjct: 73 KAKYKLVNHIRVHTGEK 89
Score = 38.8 bits (90), Expect = 4e-04
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 376 VHELLKPYECDTCGHGLSSKKSLDDHY-RIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+ E +C S+ L H H G + C W
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC-----YWEE--------- 64
Query: 435 ETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVC 469
C GK++K L +H+ HT ++
Sbjct: 65 ------CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 38.0 bits (88), Expect = 7e-04
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 433 HSETRNQVCSYCGKTYKNPNHLRSHLNT----HTKKRLYVCE-----TCGKEFMKLELLK 483
++ C +T+ + L +H+ ++ +VC GK F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 484 SHLTTHLAARPFIC 497
+H+ H +
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 37.3 bits (86), Expect = 0.002
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTC--------GRTYKTKHSLNQHMKIH 53
+ C ++F T +L H + H G C G+++K K+ L H+++H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 54 S 54
+
Sbjct: 86 T 86
Score = 35.7 bits (82), Expect = 0.005
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 10/76 (13%)
Query: 278 IHTGPG-YQCNICGRVMNDRTNLKVHMRN-HTGEKKYI--------CEVCGKGFVQWSSH 327
I C R + L H+ H G + C GK F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 328 YYHMFTHSESRNFQCT 343
H+ H+ ++ +
Sbjct: 79 VNHIRVHTGEKSGPSS 94
Score = 28.8 bits (64), Expect = 1.7
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 14/85 (16%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSY----KCPDC 79
+ E + +C RT+ T H L H+ HV + +CP
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHV----------TMEHVGGPEQNNHVCYWEECPRE 68
Query: 80 SVIVVSYSGFKSHLDIHNVEKEYFC 104
+ +H+ +H EK
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKSGPS 93
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 50.3 bits (121), Expect = 1e-08
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
KPY C CG L H R+H+GEK
Sbjct: 3 SGS-SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y C CG+ + L H R H+GEK
Sbjct: 2 SSGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
TGEK Y C++CG SF + L H+ HS
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 43.3 bits (103), Expect = 4e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
+ C CGK+F + + H R+H+GEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ CG SF L H H+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 39.9 bits (94), Expect = 6e-05
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+ CGK F S H HS + +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.9 bits (81), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ CK C ++F L H R+H+GEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPS 41
Score = 32.2 bits (74), Expect = 0.031
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK FR L +H VH+ ++P +
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.097
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C C +F+ L +H +VH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 29.1 bits (66), Expect = 0.34
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y C+ CGK F L H H +P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.70
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ C F+ L +H R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 26.4 bits (59), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C+ECGKSF+ L H+
Sbjct: 13 YNCKECGKSFRWASCLLKHQ 32
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG G +SK +LD H ++HTGE+
Sbjct: 3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C CG+ N + NL +H + HTGE+
Sbjct: 3 SGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGK + N+ +H ++HTGE+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C++CG + +L H+ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y CE CG + +L++H HT
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y CE CGKG+ + H H+ R +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+ C + + +NL +H ++HTGE+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
Score = 31.7 bits (73), Expect = 0.045
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK + K L H VHT +RP +
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 31.3 bits (72), Expect = 0.054
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ CE C G+ +K +L H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 31.3 bits (72), Expect = 0.063
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C C + K +L H KVH
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.0 bits (66), Expect = 0.40
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y CE CGK + K +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNS----KFNLDMH 31
Score = 27.9 bits (63), Expect = 0.83
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y CE+CGK + +K L H+
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQ 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-08
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
KPY CD CG L H RIHTGEK
Sbjct: 3 SGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P Y C+ CG+ L H R HTGEK
Sbjct: 2 SSGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK YVC CG +F A L H+ H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
C CGKAF + H RIHTGEK
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK YVC+ CG +F L L H HT
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK Y+C+ CGK F + H H+ + +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ + E + + C C +AF L H RIHTGEK
Sbjct: 2 SSGSSG----SGE----------KPYVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
Score = 32.5 bits (75), Expect = 0.023
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
CD CGK F + +L H +HT ++P +
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.048
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+VC+ C F L L +H ++H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 29.8 bits (68), Expect = 0.22
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P++C++C F L +H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 29.0 bits (66), Expect = 0.33
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ YVC+ CGK F + L H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGL----SAELVRH 31
Score = 25.6 bits (57), Expect = 6.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C+ CGK+F +L H+
Sbjct: 13 YVCDYCGKAFGLSAELVRHQ 32
Score = 25.6 bits (57), Expect = 6.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
G++ VCD CG+ + L +H +IH
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-08
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC CG S ++SL H RIH+G+K
Sbjct: 3 SGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C++CG+ + R +L VH R H+G+K
Sbjct: 2 SSGSSGTGEKP-YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
CSVCGKAF+ ++ VH RIH+G+K +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
TGEK Y C CG +F+ SL H+ HS
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F+ SL+VH H+
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C VCGK F S H HS + +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C VC +AF +L +H RIH+G+K
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
Score = 32.1 bits (74), Expect = 0.028
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C VCGK F ++ L H +H+ +P +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C++C F ++ L H ++H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 27.1 bits (61), Expect = 1.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F ++ LS H R H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 26.7 bits (60), Expect = 2.9
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y C CGK F + L H H +P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 25.5 bits (57), Expect = 7.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C CGK+F + L H+
Sbjct: 13 YECSVCGKAFSHRQSLSVHQ 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 2e-08
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+PYEC CG +K SL H R HTGEK
Sbjct: 3 SGS-SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG++ Y C +CG +F +SL H+ SH
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C CG+ +++L H R+HTGEK
Sbjct: 2 SSGSSGTGQRP-YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGKAF +++ H R HTGEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TG++ Y C CGK F SS H +H+ + +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG++ Y C CG +F SL H SHT
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT 36
Score = 34.4 bits (80), Expect = 0.004
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T + R ++C C +AF +L H R HTGEK
Sbjct: 2 SSGSSG----TGQ----------RPYECIECGKAFKTKSSLICHRRSHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.034
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F+ K L H HT ++P +
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.050
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ RP+ C C FKTK L H R+H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 31.4 bits (72), Expect = 0.051
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T RP+ C C FK K L H + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 29.8 bits (68), Expect = 0.21
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T +R Y C CGK F L H +H +P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+FKTK L H+
Sbjct: 13 YECIECGKAFKTKSSLICHR 32
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++C CG G S + +L+ H+++HTGEK
Sbjct: 2 SSGS-SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P ++C CG+ + R+ L VH + HTGEK
Sbjct: 2 SSGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C +CG F++ ++L H H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C CGK F+ + + VH ++HTGEK +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C CG F+ +LNVH HT
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT 36
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C CGKGF + S+ H H+ + +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C C + F L +H ++HTGEK
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.035
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C C F + L H+K+H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C C GF + L+ HH+ H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F + L H +HT ++P +
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.20
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ + C CGK F + L H H +P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGK F + L H
Sbjct: 13 FKCVECGKGFSRRSALNVH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 2e-08
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC CG K L H RIHTGE
Sbjct: 3 SGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++CS CGK+F + + VH RIHTGE +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C CG SF + + L H+ H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 43.3 bits (103), Expect = 3e-06
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C+ CG+ ++ L VH R HTGE
Sbjct: 3 SGSSGTGEKP-YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG SF L+VH HT
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 39.4 bits (93), Expect = 8e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ TGEK Y C CGK F++ S + H H+
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C C ++F L +H RIHTGE
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPS 41
Score = 31.7 bits (73), Expect = 0.041
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C+ C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.6 bits (70), Expect = 0.090
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K QL H +HT + P +
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K L H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 29.0 bits (66), Expect = 0.34
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F+K KS L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIK----KSQLHVH 31
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C +CGKSF K QL H
Sbjct: 13 YECSDCGKSFIKKSQLHVH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-08
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC+ CG S + SL H IHTG+K
Sbjct: 3 SGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+ + R++L H HTG+K
Sbjct: 2 SSGSSGTGEKP-YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C QCG +F+ +SL H+ H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C+ CGKAF+ +++ H IHTG+K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F++ SL H HT
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT 36
Score = 39.4 bits (93), Expect = 8e-05
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F SS H H+ + +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C C +AF +L H IHTG+K
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F ++ L H A+HT +P +
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 31.0 bits (71), Expect = 0.085
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F ++ L H +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 28.7 bits (65), Expect = 0.52
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F +S LTTH
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSV----RSSLTTH 31
Score = 27.9 bits (63), Expect = 0.95
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F + L+ H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 25.2 bits (56), Expect = 9.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C +CGK+F + L H+
Sbjct: 13 YECNQCGKAFSVRSSLTTHQ 32
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 49.0 bits (118), Expect = 3e-08
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKY 159
+ C +CG F + +K H+RIHTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKY 312
+ G P Y C ICG LK H+R HTG
Sbjct: 2 SSGSSGGEKP-YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 45.6 bits (109), Expect = 5e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ GEK Y CE+CG F + H+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C++C F + LK H+RIHTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
KPY C+ CG ++L H RIHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK Y CE CG F +L H HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GEK Y C+ CG F +L H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 36.7 bits (86), Expect = 6e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPF 495
+ ++ Y CE CG F L+ LKSHL H + P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPF 243
C++CG FR + LK H+ +HT P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 33.2 bits (77), Expect = 0.012
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ +P+ CE C F+ + L H R H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 30.9 bits (71), Expect = 0.076
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + + C +C +F L+ H R+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 28.2 bits (64), Expect = 0.56
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 33 CDTCGRTYKTKHSLNQHMKIH 53
C+ CG ++ +L H++IH
Sbjct: 14 CEICGTRFRHLQTLKSHLRIH 34
Score = 27.1 bits (61), Expect = 1.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y CE CG F+ L +H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-08
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC CG + K L H +IHTGEK
Sbjct: 3 SGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C+ICG+ ++ L VH + HTGEK
Sbjct: 2 SSGSSGTGEKP-YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C CG SFT+ + L H+ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++CS+CGK+F + + VH +IHTGEK +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 41.8 bits (99), Expect = 1e-05
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG SF L+VH HT
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C +CGK F + S + H H+ + +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C +C ++F L +H +IHTGEK
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.036
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C +CGK F K QL H +HT ++P +
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.054
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C++C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 29.0 bits (66), Expect = 0.35
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F K KS L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTK----KSQLHVH 31
Score = 28.7 bits (65), Expect = 0.57
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K L H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 26.7 bits (60), Expect = 2.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C CGKSF K QL H
Sbjct: 13 YECSICGKSFTKKSQLHVH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.6 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S +KPY C+ CG SK L H R HTGE
Sbjct: 3 SGSS-GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.9 bits (110), Expect = 3e-07
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y CN CG+ ++ L +H R HTGE
Sbjct: 2 SSGSSGTGMKP-YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ C+ CGKAF + + +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 3e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG K YVC +CG +F + L H +H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG K YVC CG +F L +H+ +HT
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 39.4 bits (93), Expect = 6e-05
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ TG K Y+C CGK F S H TH+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C +AF L +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGP 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +P+VCN C F+ K +L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.9 bits (71), Expect = 0.072
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P++C C F++K +L H RTH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.1 bits (69), Expect = 0.15
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C+ CGK FR K L H HT +
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.23
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T + YVC CGK F L H TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F++K L H
Sbjct: 13 YVCNECGKAFRSKSYLIIHT 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S KPY C+ CG S K L H R HTGEK
Sbjct: 3 SGSS-GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ +G P Y CN CG+ + ++ L H R HTGEK
Sbjct: 3 SGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK Y C +CG +F+Q + L H+ +H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
+ C+ CGK F+ + + H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C CG +F+ L+ H +HT
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK Y C CGK F Q S H TH+ + +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.007
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C + F L H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ CN C TF K L H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 31.7 bits (73), Expect = 0.034
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F K L H HT ++P +
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.061
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K LS H RTH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.8 bits (68), Expect = 0.21
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ + ++ Y C CGK F + +L +H TH +P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F K L AH+
Sbjct: 13 YGCNECGKTFSQKSILSAHQ 32
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCG 417
KP++C+ CG G + H R H+GEK G
Sbjct: 3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCG 318
+ +G P ++C CG+ + H R+H+GEK G
Sbjct: 3 SGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 165
+C CGK F + H R H+GEK G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 42.5 bits (101), Expect = 6e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GEK + C++CG F + + H+ SHS
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 40.6 bits (96), Expect = 3e-05
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK + CE CGKGF S Y H +HS + +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK + CE CG F H SH+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 34.5 bits (80), Expect = 0.004
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C+ C + F+ H R H+GEK
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
Score = 32.5 bits (75), Expect = 0.020
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF CE C GF T H R+H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ + ++ + CE CGK F SH +H +P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.067
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F Q H H+ ++P +
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++PF C C F H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 29.1 bits (66), Expect = 0.34
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCG 37
+ CEECGK F T Q +H+ H G++ S + G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQR-SHSGEKPSGP-SSG 46
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYECD C S SL H R+H+GEK
Sbjct: 3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C++C + + +L H R H+GEK
Sbjct: 3 SGSSGTGEKP-YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C VC KAF+ ++ H R+H+GEK
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
TGEK Y C C +F+ ASL H+ HS
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ C +F+ SL H H+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 40.2 bits (95), Expect = 4e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+VC K F +S H HS + +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C VC +AF +L H R+H+GEK
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
CDVC K F L +H VH+ ++P +
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.11
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C++C F L QH +VH
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 28.2 bits (64), Expect = 0.73
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ C F L+QH R H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 28.2 bits (64), Expect = 0.79
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y C+ C K F L H H +P
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 25.5 bits (57), Expect = 7.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C+ C K+F L H+
Sbjct: 13 YECDVCRKAFSHHASLTQHQ 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG G ++ L H+ +HTGEK
Sbjct: 2 SSGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C CG+ R +L H HTGEK
Sbjct: 3 SGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C CGK F ++ H +HTGEK +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C++CG F L+ H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y CE CGKGF+ Y H H+ + +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y CE CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+ C + F +L H +HTGEK
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.037
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F +R L H VHT ++P +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.047
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ CE C GF ++ L HH H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 31.4 bits (72), Expect = 0.056
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y CE CGK F+ L +H H +P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.18
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C C F ++ L H+ VH
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 28.3 bits (64), Expect = 0.80
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y CEECGK F + L H
Sbjct: 13 YKCEECGKGFICRRDLYTHH 32
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP+EC CG S L H RIHTGEK
Sbjct: 3 SGS-SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P ++C CG+ + + L H R HTGEK
Sbjct: 2 SSGSSGTGEKP-FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C+ CGK+F+ + + H RIHTGEK +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C +CG SF+ + L H+ H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C CG SF++ L H HT
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHT 36
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C CGK F S H H+ + +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C C ++F L H RIHTGEK
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPS 41
Score = 31.3 bits (72), Expect = 0.057
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C C +F + L H ++H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 30.5 bits (70), Expect = 0.096
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CGK F + QL H +HT ++P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.28
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C C F L+ H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 28.6 bits (65), Expect = 0.59
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ + C CGK F S L TH
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSI----SSQLATH 31
Score = 27.1 bits (61), Expect = 1.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGKSF QL H
Sbjct: 13 FECAECGKSFSISSQLATH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
K +EC CG + K +L H +IHTGEK
Sbjct: 3 SGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG ++C CG+ ++ L +H + HTGEK
Sbjct: 2 SSGSSGTGGKH-FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
+C+ CGKAF + + +H +IHTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 6e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG K + C +CG +FT+ ++L H+ H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 39.0 bits (92), Expect = 9e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG K + C CG +F +L++H HT
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT 36
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TG K + C CGK F + S+ H H+ + +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 511 SQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T H F+C C +AF L +H +IHTGEK
Sbjct: 1 GSSGSSG----TGGKH----------FECTECGKAFTRKSTLSMHQKIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.032
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K L H +HT ++P +
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.046
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T + F C C F K L H K+H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 30.6 bits (70), Expect = 0.094
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + F C C F K LS H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.4 bits (67), Expect = 0.24
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T + + C CGK F + KS L+ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTR----KSTLSMH 31
Score = 26.7 bits (60), Expect = 2.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGK+F K L H
Sbjct: 13 FECTECGKAFTRKSTLSMH 31
Score = 25.2 bits (56), Expect = 7.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + ++F+CT C K F + L H+++H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C CG + K L H + HTGE+
Sbjct: 3 SGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C+ CG+ ++ L +H ++HTGE+
Sbjct: 2 SSGSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C CG +FT+ + L H+ SH
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++CS CGKAF + + +H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F L++H SHT
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 39.4 bits (93), Expect = 7e-05
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F + S + H +H+ R+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF L +H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K L H HT +R +
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 30.6 bits (70), Expect = 0.098
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K L H ++H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C+ C F K L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 29.8 bits (68), Expect = 0.22
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ Y C CGK F + L H +H R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 27.1 bits (61), Expect = 2.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C +CGK+F K L H
Sbjct: 13 YKCSDCGKAFTRKSGLHIH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP+EC CG +K +L H RIHTGEK
Sbjct: 3 SGS-SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P ++C CG+ + NL H R HTGEK
Sbjct: 3 SGSSGTGQKP-FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C+ CGK+F N+ H RIHTGEK
Sbjct: 14 ECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG+K + C CG SF +L H+ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG+K + C CG SF G+L H HT
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 39.4 bits (93), Expect = 8e-05
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TG+K + C CGK F + H H+ ++ +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 36.8 bits (86), Expect = 6e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ F+C C ++F NL H RIHTGEK
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG 41
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK FR K L H +HT ++ +
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 31.4 bits (72), Expect = 0.046
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +PF C C +F+ K +L H ++H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 31.4 bits (72), Expect = 0.062
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C C F+ K +L H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ + C CGK F K +L TH
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRA----KGNLVTH 31
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C CGKSF+ K L H
Sbjct: 13 FECTHCGKSFRAKGNLVTH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP+EC CG S L H RIHTGE
Sbjct: 3 SGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P ++C CG+ + + L VH R HTGE
Sbjct: 2 SSGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
H+C CGK+F+ + + VH RIHTGE
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C++CG SF+ + L H+ H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 40.2 bits (95), Expect = 4e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C CG SF+ L VH HT
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C CGK F S H H+ +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 34.0 bits (79), Expect = 0.006
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+C+ C ++F L +H RIHTGE
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPS 41
Score = 31.4 bits (72), Expect = 0.054
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F QL H +HT + P +
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 31.0 bits (71), Expect = 0.073
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P C C +F L H ++H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 28.3 bits (64), Expect = 0.60
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P C C F L H R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 27.1 bits (61), Expect = 1.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ + C CGK F S L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSF----NSQLIVH 31
Score = 26.3 bits (59), Expect = 3.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGKSF QL H
Sbjct: 13 HECRECGKSFSFNSQLIVH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.2 bits (116), Expect = 5e-08
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC+ C ++K +L H R HTGE
Sbjct: 3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+CN C + N ++NL VH R HTGE
Sbjct: 3 SGSSGTGEKP-YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 3e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C+ C KAF +N+ VH R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 43.2 bits (103), Expect = 3e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +C +F ++L H+ +H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 42.1 bits (100), Expect = 7e-06
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C C +F +L VH +HT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ TGEK Y C C K F S+ H TH+
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C C +AF NL +H R HTGE
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP 41
Score = 30.1 bits (69), Expect = 0.15
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F TK +L H RTH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C+ C K F K L H HT +
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 28.6 bits (65), Expect = 0.44
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ Y C C K F L H TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 1.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C EC K+F TK L H+
Sbjct: 13 YECNECQKAFNTKSNLMVHQ 32
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
K Y+CD CG S L H R+HTGEK
Sbjct: 3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ G Y+C++CG+ + ++L+ H R HTGEK
Sbjct: 3 SGSSGMGEKC-YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GEK Y C CG F+Q + L H+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C VCGK F+ ++++ H R+HTGEK +
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ GEK Y C+VCGK F Q S H H+ + +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK Y C+ CG F+ L H HT
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C VC + F +L+ H R+HTGEK
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS 41
Score = 34.0 bits (79), Expect = 0.006
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
CDVCGKEF L+ H VHT ++P +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.040
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ ++ + C++C F HL+ H +VH
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ ++ Y C+ CGKEF + SHL TH
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQ----SSHLQTH 31
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + + + C+ C F HL H R H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 27.1 bits (61), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
Y C+ CGK F L H+ VH G++ S +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C CG G + LD H R+HTGEK
Sbjct: 2 SSGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P Y+C CG+ R +L H R HTGEK
Sbjct: 3 SGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGK + ++ H R+HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK Y C +CG + + L +H+ H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C CG + L+ H HT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 39.4 bits (93), Expect = 7e-05
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK Y C CGKG+ + +H H+ + +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + + +L H R+HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLS 41
Score = 32.5 bits (75), Expect = 0.022
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK ++ + L H VHT ++ +
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 32.1 bits (74), Expect = 0.033
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C G+K + L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ + ++ Y C CGK + + L H H +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ C C +K + L H +VH
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 29.4 bits (67), Expect = 0.31
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCD 34
Y C ECGK +K ++ L H+ VH G++ S
Sbjct: 13 YKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQ 414
KPY+CD C SL H RIHTGEK
Sbjct: 3 SGS-SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C++C + ++L VH R HTGEK
Sbjct: 3 SGSSGTGEKP-YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C VC K+F +++ VH RIHTGEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C C SF +SL H+ H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ C SF SL VH HT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 39.4 bits (93), Expect = 8e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+VC K F SS H H+ + +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 8e-04
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + ++C VC ++F +L +H RIHTGEK
Sbjct: 2 SSGSSG----TGE----------KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
CDVC K FR L H +HT ++P +
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C++C +F+ L H ++H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.0 bits (66), Expect = 0.37
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ C F+ L+ H R H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 28.6 bits (65), Expect = 0.48
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C+ C K F S LT H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRY----GSSLTVH 31
Score = 28.2 bits (64), Expect = 0.82
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C+ C KSF+ L H+
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQ 32
Score = 25.2 bits (56), Expect = 9.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
G++ CD C ++++ SL H +IH
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 49.3 bits (117), Expect = 5e-08
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 394 SKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNH 453
S S +IH G++ C +CG F + + + S + +C C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEAA 54
Query: 454 LRSHLNTHTKKRLY 467
L + K+
Sbjct: 55 LNKDEGNESGKKTS 68
Score = 48.1 bits (114), Expect = 1e-07
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 297 TNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLR 356
+ + H G++ C CG F++ S+ S + C C K A L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALN 56
Query: 357 EHKRVH 362
+ +
Sbjct: 57 KDEGNE 62
Score = 44.7 bits (105), Expect = 2e-06
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 85 SYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADIT 144
S IH ++ C C +F+R L + C C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEA 53
Query: 145 NMKVHMRIHTGEKKY 159
+ +G+K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 40.8 bits (95), Expect = 5e-05
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 450 NPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKH 509
+ H R C CG F +T + +CE C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 510 LSQHHRTHKRKDT 522
L++ K T
Sbjct: 55 LNKDEGNESGKKT 67
Score = 40.0 bits (93), Expect = 1e-04
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 271 HLNRHTNIHTGP-GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYY 329
+ IH G +C+ CG + R+ + K +CE C K Q ++
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 330 HMFTHSESRNF 340
S +
Sbjct: 58 DEGNESGKKTS 68
Score = 39.3 bits (91), Expect = 2e-04
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 35/100 (35%)
Query: 144 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTS 203
+ +IH G++ C CG F
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIR--------------------------------- 30
Query: 204 HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPF 243
R++ + + +C+ C K+ + L + + +
Sbjct: 31 --RSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 38.5 bits (89), Expect = 4e-04
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 20/84 (23%)
Query: 229 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNI 288
+ +H DR C+ C F + L + C
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT--------------------PMCEK 44
Query: 289 CGRVMNDRTNLKVHMRNHTGEKKY 312
C + L N +G+K
Sbjct: 45 CRKDSCQEAALNKDEGNESGKKTS 68
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 21/84 (25%)
Query: 482 LKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKV 541
HL R C C F + LS+ + C+
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR---------------------KTPMCEK 44
Query: 542 CDRAFFDVYNLKLHMRIHTGEKKY 565
C + L +G+K
Sbjct: 45 CRKDSCQEAALNKDEGNESGKKTS 68
Score = 35.4 bits (81), Expect = 0.004
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
C +CG F + L K +C+ C + + +LN+ S
Sbjct: 19 QKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAALNKDEGNES 63
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
KP++C+ CG + L H R+HTGEK
Sbjct: 2 SSGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P ++C CG+ + L H R HTGEK
Sbjct: 2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK + C++CG FTQ + L H+ H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C CGK F + + H R+HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK + CE CG F L+ H HT
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ +GEK + CE CGK F Q S + H H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C+ C + F L H R+HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.044
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++PF C C F L H +VH
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.7 bits (73), Expect = 0.045
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F QL H VHT ++P +
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF CE C F L H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.6 bits (65), Expect = 0.53
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ + CE CGK F + S L +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQ----NSQLHSH 31
Score = 27.1 bits (61), Expect = 1.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
+ CEECGK F QL +H+ VH G++ S
Sbjct: 13 FKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-08
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+ KPY+C+ CG G + + +LD H R+H GEK
Sbjct: 3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ + P Y+C CG+ N R NL +H R H GEK
Sbjct: 3 SGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 43.6 bits (104), Expect = 3e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C CGK + N+ +H R+H GEK +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 41.7 bits (99), Expect = 1e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+ EK Y C+ CG + + +L H+ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ + EK Y CE CGKG+ + + H H + +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 40.2 bits (95), Expect = 4e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+ EK Y CE CG + +L++H H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+ C + + NL +H R+H GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTS 41
Score = 33.2 bits (77), Expect = 0.013
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ CE C G+ + +L H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK + + L H VH ++ +
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 31.7 bits (73), Expect = 0.048
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ Y CE CGK + + + +L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNR----RLNLDMH 31
Score = 31.3 bits (72), Expect = 0.063
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ C C + + +L H +VH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.4 bits (67), Expect = 0.26
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y CE+CGK + ++ L H+ VH G++ S
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-08
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+ YEC CG K +L H RIH GEK
Sbjct: 3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG Y+C+ CG+ ++ L +H R H GEK
Sbjct: 3 SGSSGTGERH-YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++CS CGKAF + + +H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGE+ Y C +CG +F Q ++L H+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 39.8 bits (94), Expect = 6e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE+ Y C CG +F +L++H H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR 36
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGE+ Y C CGK F+Q S+ H H + +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E R ++C C +AF L +H RIH GEK
Sbjct: 2 SSGSSG----TGE----------RHYECSECGKAFIQKSTLSMHQRIHRGEKPS 41
Score = 32.1 bits (74), Expect = 0.028
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 232 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +R + C+ C F K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.3 bits (72), Expect = 0.065
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K L H +H ++P +
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ R + C C F K LS H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 29.4 bits (67), Expect = 0.30
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T +R Y C CGK F++ L H H +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK+F K L H
Sbjct: 13 YECSECGKAFIQKSTLSMH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 6e-08
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG ++ SL H H+GEK
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+CN CG+ R++L +H H+GEK
Sbjct: 2 SSGSSGTGEKP-YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG +F +SL H+ +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 42.5 bits (101), Expect = 5e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C+ CGKAF +++ +H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F SL +H +H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 39.4 bits (93), Expect = 7e-05
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F SS H THS + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF +L +H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPS 41
Score = 32.9 bits (76), Expect = 0.017
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK FR + L H A H+ ++P +
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F+ + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 29.4 bits (67), Expect = 0.30
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F+ + L+ H TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 29.0 bits (66), Expect = 0.33
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ Y C CGK F L H TH +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F+ + L H+
Sbjct: 13 YKCNECGKAFRARSSLAIHQ 32
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 6e-08
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY C CG + + +L H +IHT +K
Sbjct: 3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ C+ CGKAF +N+ H +IHT +K +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y+C +CG +FT ++L H+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y C CG+ R+NL H + HT +K
Sbjct: 3 SGSSGTGEKP-YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y+C CG +F + +L H HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT 36
Score = 39.8 bits (94), Expect = 5e-05
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK YIC CGK F S+ H H++ + +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C +AF NL H +IHT +K
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPS 41
Score = 32.1 bits (74), Expect = 0.032
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P++C C F ++ +L +H K+H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.9 bits (71), Expect = 0.074
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F ++ L +H +HT +P +
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+IC C F + +L +H + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y+C CGK F +S+L H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTI----RSNLIKH 31
Score = 26.3 bits (59), Expect = 3.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK+F + L H
Sbjct: 13 YICAECGKAFTIRSNLIKH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 6e-08
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S KPY C CG SSK L H R H+GEK
Sbjct: 3 SGSS-GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ G P Y C+ CG+ + ++ L +HMR H+GEK
Sbjct: 2 SSGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ CS CGKAF+ + + +HMR H+GEK +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
GEK Y C +CG +F+ + L H +HS
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 41.8 bits (99), Expect = 1e-05
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ GEK Y C CGK F S HM THS + +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK Y C CG +F+ L +H +H+
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C +AF L +HMR H+GEK
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
Score = 32.1 bits (74), Expect = 0.033
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F +K +L H RTH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 31.4 bits (72), Expect = 0.055
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ ++P+ C+ C F K +L H + H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ ++ Y C CGK F L H+ TH +P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 29.1 bits (66), Expect = 0.31
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CGK F K L HM H+ ++P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F +K L H
Sbjct: 13 YGCSECGKAFSSKSYLIIHM 32
Score = 26.4 bits (59), Expect = 3.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + + + C+ C K F++ + L H R H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C CG + K L H + HTGE+
Sbjct: 3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++CS CGK+F + +++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C+ CG+ ++ L++H + HTGE+
Sbjct: 3 SGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C CG SFT + L H+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 41.8 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG SF L +H HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 39.4 bits (93), Expect = 7e-05
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F S H H+ R+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C ++F L++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHS 41
Score = 32.1 bits (74), Expect = 0.031
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C+ C +F K LR H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.7 bits (73), Expect = 0.041
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K +L+ H HT +R +
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 30.6 bits (70), Expect = 0.099
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ Y C CGK F L+ H H R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C +CGKSF K +L H
Sbjct: 13 YKCSDCGKSFTWKSRLRIH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
K ++C+ C + SL H RIHTGEK
Sbjct: 3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ G ++CN C + ++L VH R HTGEK
Sbjct: 3 SGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
G+K + C +C +FTQ +SL H+ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 42.5 bits (101), Expect = 7e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C+ C K F +++ VH RIHTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
G+K + C C +F SL VH HT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ G+K + C C K F Q SS H H+ + +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C C + F +L +H RIHTGEK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.043
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ C K F L H +HT ++P +
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.046
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + F CN C TF L H ++H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 29.8 bits (68), Expect = 0.20
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + F C C F L+ H R H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 29.4 bits (67), Expect = 0.28
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ K+L+ C C K F + S LT H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQ----SSSLTVH 31
Score = 26.3 bits (59), Expect = 3.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C EC K+F L H
Sbjct: 13 FKCNECKKTFTQSSSLTVH 31
Score = 25.5 bits (57), Expect = 5.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + + F+C C K F + L H+R+H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+KPY C C S K L H R HTG K
Sbjct: 3 SGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y C+ C + + ++ L VH R+HTG K
Sbjct: 2 SSGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ CS C K F+ + + VH R HTG K +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG K Y C QC +F+ + L H+ SH
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG K Y C C +F+L L VH SHT
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT 36
Score = 39.1 bits (92), Expect = 9e-05
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TG K Y C C K F S H +H+ + +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C + F L +H R HTG K
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
Score = 32.1 bits (74), Expect = 0.032
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +P+ C+ C TF LK L H + H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 32.1 bits (74), Expect = 0.033
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C C K F +K QL H HT +P +
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C+ F K L H R+H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 29.4 bits (67), Expect = 0.29
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T + Y C C K F L H +H +P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 28.3 bits (64), Expect = 0.76
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C +C K+F K QL H
Sbjct: 13 YGCSQCAKTFSLKSQLIVH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-08
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQ 414
+PY C CG + + +L H +IHTGEK
Sbjct: 3 SGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 45.9 bits (110), Expect = 3e-07
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y C +CG+ DR+NL H + HTGEK
Sbjct: 2 SSGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ C+VCGKAF D +N+ H +IHTGEK
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGE+ Y+C CG +FT ++L H+ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE+ Y+C CG +F +L H HT
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT 36
Score = 40.2 bits (95), Expect = 4e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ TGE+ YIC VCGK F S+ H H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 36.7 bits (86), Expect = 8e-04
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E R + C VC +AF D NL H +IHTGEK
Sbjct: 2 SSGSSG----TGE----------RPYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.042
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C VCGK F + L +H +HT ++P +
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.11
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +RP++C +C F + +L +H K+H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ RP+IC C F + +L +H + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.4 bits (67), Expect = 0.27
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T +R Y+C CGK F +S+L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTD----RSNLIKH 31
Score = 26.3 bits (59), Expect = 3.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C CGK+F + L H
Sbjct: 13 YICTVCGKAFTDRSNLIKH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-08
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP+EC C ++K +L H R HTGEK
Sbjct: 3 SGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P ++C+ C + N ++NL VH R HTGEK
Sbjct: 2 SSGSSGTGEKP-FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+CS C KAF +N+ VH R HTGEK +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 43.6 bits (104), Expect = 3e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C +C +F ++L H+ +H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 40.9 bits (97), Expect = 2e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C C K F S+ H TH+ + +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 40.5 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C C +F +L VH +HT
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C C +AF NL +H R HTGEK
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPS 41
Score = 30.9 bits (71), Expect = 0.068
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C C F TK +L H RTH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 30.9 bits (71), Expect = 0.073
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C+ C F K +L H + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.8 bits (68), Expect = 0.20
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ + C C K F L H TH +P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.28
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C C K F K L H HT ++P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 1.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C EC K+F TK L H
Sbjct: 13 FECSECQKAFNTKSNLIVH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-08
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
K Y C CG S L H R+H+GEK
Sbjct: 3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG Y C CG+ + L H R H+GEK
Sbjct: 3 SGSSGTGEKL-YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
TGEK Y C++CG SF++ L H+ HS
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 42.5 bits (101), Expect = 7e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ C CGK+F+ + H R+H+GEK
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ CG SF+ L H H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+ CGK F + H HS + +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ CK C ++F L H R+H+GEK
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPS 41
Score = 31.3 bits (72), Expect = 0.059
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F L +H +H+ ++P +
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.091
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++ + C C +F L +H ++H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++LY C+ CGK F + L H H +P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.14
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + + C+ C F L +H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 27.1 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C+ECGKSF L H+
Sbjct: 13 YNCKECGKSFSRAPCLLKHE 32
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-08
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
PYEC CG S K L H R H GEK
Sbjct: 3 SGS-SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C+ CG+ + + L H R H GEK
Sbjct: 2 SSGSSGTGENP-YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGKAF+ + H R H GEK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGE Y C +CG +F++ L H+ +H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 39.4 bits (93), Expect = 7e-05
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE Y C CG +F+ L H +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA 36
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGE Y C CGK F + H TH+ + +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF Y L H R H GEK
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPS 41
Score = 31.3 bits (72), Expect = 0.052
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T + P+ C+ C F K L H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 30.9 bits (71), Expect = 0.067
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K QL H H ++P +
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.25
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ P+ C C F K L H RTH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 28.2 bits (64), Expect = 0.81
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T + Y C CGK F + K L +H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSR----KYQLISH 31
Score = 26.7 bits (60), Expect = 2.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK+F K QL +H
Sbjct: 13 YECHECGKAFSRKYQLISH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 47.6 bits (114), Expect = 8e-08
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
KPY CD CG S K SL H R+HTG
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GEK Y C QCG +F+Q SL H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 43.3 bits (103), Expect = 3e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK Y C+ CG +F+ GSL VH HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 42.2 bits (100), Expect = 7e-06
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKY 312
+ G P Y+C+ CG+ + + +L VH+R HTG
Sbjct: 2 SSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ GEK Y C+ CGK F Q S H+ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKY 159
++C CGKAF+ ++ VH+R+HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 36.4 bits (85), Expect = 9e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF +L +H+R+HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 31.8 bits (73), Expect = 0.038
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
++P+ C+ C F K L H +VH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.5 bits (67), Expect = 0.22
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPF 243
CD CGK F K L H+ VHT P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.1 bits (66), Expect = 0.29
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 485 HLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ +P+ C+ C F K L H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.3 bits (64), Expect = 0.68
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPF 495
+ ++ Y C+ CGK F + L H+ H + P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 26.8 bits (60), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C++CGK+F K L H
Sbjct: 12 YRCDQCGKAFSQKGSLIVHI 31
Score = 24.8 bits (55), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
G++ CD CG+ + K SL H+++H
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-08
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY C+ CG L +H RIHTGEK
Sbjct: 3 SGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y C CG+ + L+ H R HTGEK
Sbjct: 2 SSGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ C CGKAF + ++ H RIHTGEK +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 9e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C++CG +F + L H+ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y CE CG +F L H HT
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ TGEK Y CE CGK F+ S H H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C+ C +AF L+ H RIHTGEK
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.034
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F QL+EH +HT ++P +
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C C F L++H ++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.4 bits (67), Expect = 0.26
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ CE C F L +H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.0 bits (66), Expect = 0.43
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y CE CGK F+ S L H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIH----DSQLQEH 31
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y CEECGK+F QL H+
Sbjct: 13 YNCEECGKAFIHDSQLQEHQ 32
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 8e-08
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
S + PY+C C S K L H R+HT EK
Sbjct: 3 SGSS-GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++CS C K+F+ + VH R+HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ G P Y+C+ C + + + L VH R HT EK
Sbjct: 3 SGSSGAGVNP-YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
G Y C QC SF+ L H+ H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ G Y C C K F H H+ + +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 36.4 bits (85), Expect = 8e-04
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
G Y C C SF+ L VH HT
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C+++F L +H R+HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPS 41
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C C K F K +L H +HT ++P +
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ P+ C C F K L H R H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 31.4 bits (72), Expect = 0.049
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ P+ C+ C +F K L H ++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 31.0 bits (71), Expect = 0.075
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ Y C C K F K L H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSG----KLRLLVH 31
Score = 27.5 bits (62), Expect = 1.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C +C KSF K++L H
Sbjct: 13 YKCSQCEKSFSGKLRLLVH 31
Score = 27.5 bits (62), Expect = 1.5
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + ++C+ C+K F+ L H+R+H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+ YEC CG + K +L H RIHTGEK
Sbjct: 3 SGS-SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG Y+C+ CG+ ++ L +H R HTGEK
Sbjct: 2 SSGSSGTGERH-YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++CS CGKAFA + + +H RIHTGEK +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGE+ Y C +CG +F + ++L H+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGE+ Y C CGK F + S+ H H+ + +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE+ Y C CG +FA +L +H HT
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E H ++C C +AF L +H RIHTGEK
Sbjct: 2 SSGSSG----TGERH----------YECSECGKAFARKSTLIMHQRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.017
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 232 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +R + C+ C F K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 31.7 bits (73), Expect = 0.047
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K L H +HT ++P +
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.11
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ R + C C F K L H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 29.8 bits (68), Expect = 0.22
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T +R Y C CGK F + KS L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFAR----KSTLIMH 31
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK+F K L H
Sbjct: 13 YECSECGKAFARKSTLIMH 31
Score = 25.5 bits (57), Expect = 6.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + R+++C+ C K FA + L H+R+H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-08
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+KPY C+ CG S SL H IHTGEK
Sbjct: 3 SGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y CN CG+ + ++L H HTGEK
Sbjct: 2 SSGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
+ C+ CGKAF+ +++ H IHTGEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG K Y+C +CG +F+ ++SL H+ H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG K Y+C CG +F+++ SL H HT
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ TG K Y+C CGK F +SS H H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C +AF +L H IHTGEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F + L H +HT ++P +
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T + Y+C CGK F S LTTH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSV----YSSLTTH 31
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +P++CN C F + L H +H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 29.4 bits (67), Expect = 0.31
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P++C C F L+ H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C ECGK+F L H+ +H G++ S
Sbjct: 13 YMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 9e-08
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC C + K L H + HTGEK
Sbjct: 3 SGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C +C + + +L H + HTGEK
Sbjct: 2 SSGSSGTGEKP-YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C VC KAF ++ H + HTGEK
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C+ C +FTQ A L H+ +H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 39.4 bits (93), Expect = 8e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ C +F L H +HT
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+VC K F Q + H TH+ + +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++CKVC +AF +L H + HTGEK
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.025
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C +C F K HL QH K H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 32.1 bits (74), Expect = 0.032
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C VC K F K L +H HT ++P +
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ CS F K HL+QH +TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 28.3 bits (64), Expect = 0.72
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C+ C K F + K+HL H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQ----KAHLAQH 31
Score = 26.0 bits (58), Expect = 4.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C+ C K+F K L H
Sbjct: 13 YECKVCSKAFTQKAHLAQH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY C CG + + +L H +IHTGEK
Sbjct: 2 SSGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C CG+ DR+NL H + HTGEK
Sbjct: 2 SSGSSGTGEKP-YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C+ CGKAF D +N+ H +IHTGEK +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG +FT ++LF H+ H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F +L H HT
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ TGEK Y C CGK F S+ + H H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF D NL H +IHTGEK
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
Score = 30.9 bits (71), Expect = 0.077
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F +S+L TH
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTD----RSNLFTH 31
Score = 30.9 bits (71), Expect = 0.089
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F + +L H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 30.2 bits (69), Expect = 0.17
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CGK F + L H +HT ++P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK+F + L H
Sbjct: 13 YRCAECGKAFTDRSNLFTH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++C CG S L+ H RIHTGEK
Sbjct: 3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P + C CG+ +D L H R HTGEK
Sbjct: 3 SGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
C CGKAF+D + H RIHTGEK +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C CG +F+ L H+ H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C CG +F+ LN H HT
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C CGK F H H+ + +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 8e-04
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + F C C +AF D L H RIHTGEK
Sbjct: 2 SSGSSG----TGE----------KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41
Score = 30.9 bits (71), Expect = 0.084
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C C F L+QH R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.9 bits (71), Expect = 0.089
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F L +H +HT ++P +
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C C F L QH ++H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 29.0 bits (66), Expect = 0.40
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ + C CGK F L H H +P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 4.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
+ C +CGK+F I L H+
Sbjct: 13 FDCIDCGKAFSDHIGLNQHR 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG S L H RIHTGEK
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 4e-07
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+ + + L H R HTGEK
Sbjct: 2 SSGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 7e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG +F+Q + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C+ CGKAF+ + + H RIHTGEK +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 9e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F+ L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.006
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF L H RIHTGEK
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPS 41
Score = 31.3 bits (72), Expect = 0.061
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F +L H +HT ++P +
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.071
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.0 bits (66), Expect = 0.34
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F L++H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y C CGK F + L H H +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 4.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F +L H+
Sbjct: 13 YKCNECGKAFSQTSKLARHQ 32
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
P+ C CG + K +L H +IHTGE+
Sbjct: 3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P + C+ CG+V +TNL +H + HTGE+
Sbjct: 3 SGSSGTGENP-FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
CS CGK F TN+ +H +IHTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGE ++C +CG FT +L H+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE ++C CG F +L +H HT
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT 36
Score = 40.2 bits (95), Expect = 4e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGE +IC CGK F ++ H H+ R +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F C C + F NL +H +IHTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41
Score = 32.1 bits (74), Expect = 0.027
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ PFIC C F K +L H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 31.7 bits (73), Expect = 0.035
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T + PF+C+ C F K +L H K+H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 31.7 bits (73), Expect = 0.045
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K L H +HT +RP +
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 30.9 bits (71), Expect = 0.069
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T + ++C CGK F L H H RP
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 27.8 bits (63), Expect = 1.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGK F K L H
Sbjct: 13 FICSECGKVFTHKTNLIIH 31
Score = 26.7 bits (60), Expect = 2.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 15/56 (26%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYEC 385
+ + F C+ C K F T++ N+I HQ+ +H +P
Sbjct: 3 SGSSGTGENPFICSECGKVF--------------THKTNLIIHQK-IHTGERPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY C CG + K +L H RIHTGEK
Sbjct: 3 SGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C CG+ + NL H R HTGEK
Sbjct: 2 SSGSSGTGEKP-YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 4e-06
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGKAFA N+ H RIHTGEK
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 7e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG +F Q A+L H+ H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 39.0 bits (92), Expect = 9e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +FA +L H HT
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F Q ++ H H+ + +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + ++C C +AF NL H RIHTGEK
Sbjct: 2 SSGSSG----TGE----------KPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.028
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C C F K +L QH ++H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 32.1 bits (74), Expect = 0.034
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K L +H +HT ++P +
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.054
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K +L+QH R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 29.8 bits (68), Expect = 0.21
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F + K++LT H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQ----KANLTQH 31
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F K L H+
Sbjct: 13 YRCGECGKAFAQKANLTQHQ 32
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++C+ CG + L H R+HTGEK
Sbjct: 2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P +QC CG+ ++L H R HTGEK
Sbjct: 2 SSGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK + C++CG FTQ + L H+ H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
QC CGK F +++ H R+HTGEK +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK + CE CGK F Q S + H H+ + +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK + CE CG F L+ H HT
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 34.4 bits (80), Expect = 0.005
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
FQC+ C + F +L H R+HTGEK
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
Score = 32.5 bits (75), Expect = 0.018
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 232 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++PF C C F HL H +VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 31.4 bits (72), Expect = 0.055
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H VHT ++P +
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.074
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF CE C F HL H R H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.61
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ + ++ + CE CGK F + L SH H +P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 26.4 bits (59), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
+ CEECGK F L +H+ VH G++ S +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG S L H R+HTGEK
Sbjct: 3 SGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P YQCN CG+ + + L H R HTGEK
Sbjct: 3 SGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 5e-06
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+QC+ CGKAF+ + + H R+HTGEK +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG K Y C +CG +F+Q + L H+ H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG K Y C CG +F+ L H HT
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TG K Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+QC C +AF L H R+HTGEK
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPS 41
Score = 31.0 bits (71), Expect = 0.068
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +P+ CN C F L +H +VH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 30.6 bits (70), Expect = 0.094
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F +L H VHT ++P +
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.54
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F L++H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 27.9 bits (63), Expect = 0.89
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T + Y C CGK F + L H H +P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 25.6 bits (57), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F +L H+
Sbjct: 13 YQCNECGKAFSQTSKLARHQ 32
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C CG S H R+HTG++
Sbjct: 3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 44.9 bits (107), Expect = 9e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C CG+ D ++ H R HTG++
Sbjct: 3 SGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C CGKAF D ++ H R+HTG++
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG +F +S H+ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 39.5 bits (93), Expect = 7e-05
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F S H HT
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F SS H H+ R +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF D + H R+HTG++
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
Score = 31.4 bits (72), Expect = 0.050
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F +H +HT RP +
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 29.9 bits (68), Expect = 0.18
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y C CGK F H H RP
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 29.9 bits (68), Expect = 0.20
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F +QH R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 26.0 bits (58), Expect = 5.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F H+
Sbjct: 13 YKCMECGKAFGDNSSCTQHQ 32
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++CD CG + L+ H +HT EK
Sbjct: 3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.6 bits (109), Expect = 6e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P ++C+ICG+ R+ L H HT EK
Sbjct: 3 SGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
C +CGK+F + + H +HT EK +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 42.9 bits (102), Expect = 4e-06
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C+ CG SF LN HS HT
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C CG SF + L H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C++CGK F S H H+ + +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ F+C +C ++F L H +HT EK
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS 41
Score = 34.4 bits (80), Expect = 0.005
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
CD+CGK F + +L H VHT ++P +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.033
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C++C +F + L +H VH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 31.7 bits (73), Expect = 0.044
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C+ C F + L++H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ + C+ CGK F L H H A +P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.48
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
+ C+ CGKSF + +L H VH ++ S +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPSS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 375 SVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S KP+ C C SSK L H + H EK
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 45.2 bits (108), Expect = 7e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
CS C KAF+ + + VH + H EK +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 276 TNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
++ +G P + C+ C + + ++ L VH + H EK
Sbjct: 2 SSGSSGEKP-FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 36.7 bits (86), Expect = 6e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F C C++AF L +H + H EK
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCS 442
+GEK + C C +F+ + L H+ +H+E + S
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+GEK + C C K F S H TH+E + +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK + C C +F+ L VH +H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 34.0 bits (79), Expect = 0.006
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C C K F K L H H ++P +
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 487 TTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ +PF C C F +K +L H +TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 235 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++PF C+ C F K +L H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.0 bits (66), Expect = 0.31
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCET 471
CS C K + + ++L H TH +++ +
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 28.3 bits (64), Expect = 0.66
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C C K+F +K L H
Sbjct: 11 FGCSCCEKAFSSKSYLLVH 29
Score = 27.1 bits (61), Expect = 1.7
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
+ ++ + C C K F L H TH +P
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 26.7 bits (60), Expect = 2.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVH 362
S + F C+ C+K F++ + L H++ H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
K Y+C+ CG S L H +IHTGEK
Sbjct: 3 SGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG Y+CN CG+V + + L H + HTGEK
Sbjct: 2 SSGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 7e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C+ CGK F+ + + H +IHTGEK +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK+Y C +CG F++ + L H+ H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK+Y C CG F+ L+ H HT
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT 36
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK+Y C CGK F + S H H+ + +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + ++C C + F L H +IHTGEK
Sbjct: 2 SSGSSG----TGE----------KRYKCNECGKVFSRNSQLSQHQKIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.034
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++ + CN C F L QH K+H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 32.1 bits (74), Expect = 0.034
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F QL +H +HT ++P +
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.27
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + + C C F LSQH + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 28.3 bits (64), Expect = 0.74
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F + S L+ H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSR----NSQLSQH 31
Score = 25.9 bits (58), Expect = 5.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F QL H+
Sbjct: 13 YKCNECGKVFSRNSQLSQHQ 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + L +H RIHTG K
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+V ++L H R HTG K
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 42.1 bits (100), Expect = 8e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C+ CGK F +++ H RIHTG K +
Sbjct: 14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG FTQ + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F +L H RIHTG K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPS 41
Score = 31.7 bits (73), Expect = 0.036
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F HL H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.3 bits (72), Expect = 0.062
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H +HT +P +
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL+ H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 27.9 bits (63), Expect = 0.95
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F + SHL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQ----NSHLANH 31
Score = 26.3 bits (59), Expect = 3.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F L H+
Sbjct: 13 YKCNECGKVFTQNSHLANHQ 32
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 46.7 bits (112), Expect = 2e-07
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPYEC CG S L H R+HTGEK
Sbjct: 3 SGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C CG+ + T+L H R HTGEK
Sbjct: 2 SSGSSGTGEKP-YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C++CG +F+Q L H+ H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 42.1 bits (100), Expect = 8e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGKAF+ T++ H R+HTGEK
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ CG +F+ L H HT
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+ CGK F Q + H H+ + +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++CK C +AF +L H R+HTGEK
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS 41
Score = 31.7 bits (73), Expect = 0.042
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C C F HL QH +VH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 30.9 bits (71), Expect = 0.081
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F L +H VHT ++P +
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.34
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ C F HL QH R H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 27.1 bits (61), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C+ CGK F + +HL H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQ----TTHLIQH 31
Score = 25.5 bits (57), Expect = 5.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C+ECGK+F L H+ VH G++ S
Sbjct: 13 YECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-07
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S KPY C+ CG K L+ H RIHTGEK
Sbjct: 3 SGSS-GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y CN CG+ +++L H R HTGEK
Sbjct: 3 SGSSGTGEKP-YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 5e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y+C +CG SF Q + L H+ H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 42.5 bits (101), Expect = 6e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
+ C+ CGK+F +++ H RIHTGEK
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK YIC CGK F+Q S H H+ + +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 8e-05
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y+C CG SF LN H HT
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C ++F +L H RIHTGEK
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.017
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+IC C F K HL++H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 32.5 bits (75), Expect = 0.021
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F K L H +HT ++P +
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.024
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P++CN C +F K HL +H ++H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.6 bits (70), Expect = 0.11
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y+C CGK F++ KSHL H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQ----KSHLNRH 31
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGKSF K L H+
Sbjct: 13 YICNECGKSFIQKSHLNRHR 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-07
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 374 RSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S E KPY+C CG S L H+ HT EK
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ E + +QCS CGK+F+ + H HT EK
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ G P YQC+ CG+ + L H HT EK
Sbjct: 3 SGSSGEGEKP-YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.4 bits (93), Expect = 8e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GEK Y C +CG SF+ L H +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ GEK Y C CGK F H TH+ + +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK Y C CG SF+ L H +HT
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 528 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ E + +QC C ++F Y L H HT EK
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPS 41
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F L+QH TH
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 33.3 bits (77), Expect = 0.013
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ ++ Y C CGK F LT H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSG----SYRLTQH 31
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F +L +H HT ++P +
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 32.5 bits (75), Expect = 0.020
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ ++P+ C+ C +F L QH+ H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 28.7 bits (65), Expect = 0.48
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C ECGKSF +L H H ++ S
Sbjct: 13 YQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 26.4 bits (59), Expect = 3.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
EG++ C CG+++ + L QH H
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 25.6 bits (57), Expect = 5.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + +QC+ C K F+ L +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG L H RIHTGEK
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 9e-07
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+V + L H R HTGEK
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C+ CGK F + + H RIHTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG F + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG F L+ H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ TGEK Y C CGK F S H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F L H RIHTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK FR L H +HT ++P +
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.040
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F+ +L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 30.6 bits (70), Expect = 0.11
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F+ +LS+H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.0 bits (66), Expect = 0.36
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F S+L+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRH----NSYLSRH 31
Score = 27.9 bits (63), Expect = 0.97
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C ECGK F+ L H+ +H G++ S
Sbjct: 13 YKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + L +H+RIHTGEK
Sbjct: 3 SGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P Y+CN CG+V ++L H R HTGEK
Sbjct: 2 SSGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK Y C +CG FTQ + L H H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C+ CGK F +++ H RIHTGEK
Sbjct: 14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C CG F L H HT
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.009
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F +L H RIHTGEK
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
Score = 31.3 bits (72), Expect = 0.056
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.073
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ CN C F HL H+++H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 30.2 bits (69), Expect = 0.13
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL+ H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.4 bits (67), Expect = 0.28
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ Y C CGK F + SHLT H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQ----NSHLTNH 31
Score = 26.7 bits (60), Expect = 2.2
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F L H
Sbjct: 13 YKCNECGKVFTQNSHLTNHW 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/40 (35%), Positives = 15/40 (37%)
Query: 374 RSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S PYEC CG + K L H R H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++CS CGKAF + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 277 NIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P Y+C+ CG+ N + L H R H GE
Sbjct: 3 SGSSGENP-YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 38.3 bits (90), Expect = 2e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GE Y C +CG +F + L H+ +H+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+GE Y C CGK F + H TH+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GE Y C CG +F L H +H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF L H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGP 39
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CGK F K QL H H +
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.16
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 459 NTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
+ + + Y C CGK F + + L SH TH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.18
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 488 THLAARPFICEFCSAGFKTKKHLSQHHRTH 517
P+ C C F K L H RTH
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 29.4 bits (67), Expect = 0.24
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + P+ C+ C F K L H + H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 28.2 bits (64), Expect = 0.63
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK+F K QL +H
Sbjct: 11 YECSECGKAFNRKDQLISH 29
Score = 25.2 bits (56), Expect = 8.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVH 362
S ++C+ C K F L H+R H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S KPYEC+ CG K L H R H G
Sbjct: 3 SGSS-GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P Y+CN CG+ ++ L VH R H G
Sbjct: 2 SSGSSGSGEKP-YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK Y C +CG +F + L H+ +H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 41.7 bits (99), Expect = 1e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C+ CGKAF + + VH R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C CG +F L VH +H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36
Score = 39.8 bits (94), Expect = 5e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ +GEK Y C CGK F+ S H TH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF L +H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGP 41
Score = 30.6 bits (70), Expect = 0.10
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ CN C F K L H + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F K L H RTH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 29.0 bits (66), Expect = 0.35
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C+ CGK F K L H H
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 28.7 bits (65), Expect = 0.52
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ + ++ Y C CGK F+ LL H TH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 26.7 bits (60), Expect = 2.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F K L H+
Sbjct: 13 YECNECGKAFIWKSLLIVHE 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+P++C+ CG L H RIHTGEK
Sbjct: 3 SGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P ++CN CG+ +L H R HTGEK
Sbjct: 2 SSGSSGTGERP-HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGE+ + C +CG SF Q A L H+ H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 41.3 bits (98), Expect = 1e-05
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
H+C+ CGK+F ++ H RIHTGEK
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE+ + C CG SF L H HT
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT 36
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGE+ + C CGK F+Q + H H+ + +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.009
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
R +C C ++F +L H RIHTGEK
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS 41
Score = 32.5 bits (75), Expect = 0.024
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +RP CN C +F HL QH ++H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 31.3 bits (72), Expect = 0.055
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ RP C C F HL QH R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 31.3 bits (72), Expect = 0.060
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L +H +HT ++P +
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.47
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T +R + C CGK F++ +HL H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQ----SAHLIQH 31
Score = 25.9 bits (58), Expect = 4.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGKSF L H
Sbjct: 13 HKCNECGKSFIQSAHLIQH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.5 bits (110), Expect = 3e-07
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETC 164
++ C +CGK F D+ ++ H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.9 bits (93), Expect = 6e-05
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQC 416
K C+ CG L+ H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.8 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C++C + F DVY+L H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 38.4 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVC 317
C ICG++ D +L H +H+GEK Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.0 bits (88), Expect = 3e-04
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 432 SHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETC 472
S + C CGK +++ HL H +H+ ++ Y
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 5e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMC 248
C++CGK FR L H H+ ++P+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.002
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSA 502
+ ++ CE CGK F + L H +H +P+ S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
Score = 35.7 bits (82), Expect = 0.002
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVC 345
+ K+ CE+CGK F H +HS + +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.4 bits (71), Expect = 0.050
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYC 444
K+ C+ CG F L HK SHS +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.3 bits (68), Expect = 0.13
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTH 517
+ CE C F+ HL++H +H
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSH 35
Score = 30.3 bits (68), Expect = 0.15
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 183
K+ CE CG F LN H SH+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
Score = 29.5 bits (66), Expect = 0.26
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVR 57
+++ C+ CG+ ++ + LN+H HS +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 29.1 bits (65), Expect = 0.38
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + C +C K F L HK H
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
T + C +C F+ HL +H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 26.4 bits (58), Expect = 3.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTC 36
ACE CGK F+ L HK L H G++
Sbjct: 13 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPS 46
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 46.6 bits (110), Expect = 3e-07
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+ C CG + +K H+R HT + Y C C SF G+L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 46.6 bits (110), Expect = 3e-07
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
Y C CG + LK H+R HT + Y C C F + HM + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 45.9 bits (108), Expect = 6e-07
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 383 YECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
Y C+ CG L H R HT + Y C C SF +L H S +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 45.1 bits (106), Expect = 9e-07
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 467 YVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
Y+CE CG K +LK H+ TH RP+ C +C+ FKTK +L++H ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 42.8 bits (100), Expect = 7e-06
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+C CG K P+ L+ H+ THT R Y C C F L H+ +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 41.6 bits (97), Expect = 2e-05
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 311 KYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRK 367
KYICE CG + S H+ TH++ R + CT C+ F T L +H + ++K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 40.9 bits (95), Expect = 3e-05
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
Y CEECG K L H H + C C ++KTK +L +HMK +
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 40.9 bits (95), Expect = 3e-05
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 102 YFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 158
Y C C + L HI+ H +VR + C+ C +F N+ HM+ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 40.9 bits (95), Expect = 3e-05
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
C+ CG + LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 40.5 bits (94), Expect = 4e-05
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLD 399
+ C C + P+ L++H R H +PY C C +K +L
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV---------------RPYHCTYCNFSFKTKGNLT 46
Query: 400 DHYRIHTGEKK 410
H + KK
Sbjct: 47 KHMKSKAHSKK 57
Score = 39.3 bits (91), Expect = 1e-04
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 410 KYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHT 462
KY+C++CG + + L H +H++ R C+YC ++K +L H+ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 38.2 bits (88), Expect = 3e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 270 NHLNRHTNIHTGPG-YQCNICGRVMNDRTNLKVHMRNHTGEKK 311
+ L +H HT Y C C + NL HM++ KK
Sbjct: 15 SMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 37.4 bits (86), Expect = 5e-04
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 14/70 (20%)
Query: 495 FICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 554
+ICE C K L +H RTH R + C C+ +F NL
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV--------------RPYHCTYCNFSFKTKGNLTK 47
Query: 555 HMRIHTGEKK 564
HM+ KK
Sbjct: 48 HMKSKAHSKK 57
Score = 35.1 bits (80), Expect = 0.003
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 185 QFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 238
+++C CG K P L HIR +HT + C C F+ K L +HM
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 31.2 bits (70), Expect = 0.097
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 158 KYVCETCGASFALWGSLNVHSYSHTNTQ-FVCSYCGNTYKNPKALTSHIR 206
KY+CE CG L H +HT+ + + C+YC ++K LT H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 28.9 bits (64), Expect = 0.57
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 30 RSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVSYSGF 89
+ +C+ CG K L +H++ H+DVR Y C C+ +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVR---------------PYHCTYCNFSFKTKGNL 45
Query: 90 KSHLDIHNVEK 100
H+ K
Sbjct: 46 TKHMKSKAHSK 56
Score = 26.2 bits (57), Expect = 4.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C+ C LK H+R HT + Y
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPY 30
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 374 RSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S +P++C+ CG G + L H R+H+ EK
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P ++CN CG+ R++L H+R H+ EK
Sbjct: 2 SSGSSGSGERP-FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ R +C+ CGK F +++ H+R+H+ EK +
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 38.3 bits (90), Expect = 2e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GE+ + C +CG F + + L H HS
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GE+ + C CGKGF + S H+ HS ++ +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ RPF C C GF + HL+ H R H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GE+ + C CG F L H H+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 528 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ R F+C C + F +L H+R+H+ EK
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSS 41
Score = 34.4 bits (80), Expect = 0.005
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + +RPF CN C F + HL H ++H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F + L H+ +H+ ++ +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + +R + C CGK F + +SHL H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGR----RSHLAGH 31
Score = 28.7 bits (65), Expect = 0.48
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
+ C ECGK F + L H +H ++ S
Sbjct: 13 FKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 26.3 bits (59), Expect = 3.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ S R F+C C K F + L H R+H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++C CG L H RIHTGEK
Sbjct: 3 SGS-SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ +G P ++C CG+ +L H+R HTGEK
Sbjct: 2 SSGSSGSGEKP-FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C CGKAF ++ H+RIHTGEK +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK + C++CG +F Q L H H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK + C+ CG +F L H HT
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK + C+ CGK F Q H+ H+ + +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+CK C +AF +L H+RIHTGEK
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.031
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++PF C C F+ HL H ++H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 31.7 bits (73), Expect = 0.039
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK FR L H+ +HT ++P +
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.093
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C+ C F+ HL+ H R H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ + C+ CGK F + HL +H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQ----NIHLASH 31
Score = 26.3 bits (59), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
+ C+ECGK+F+ I L +H +H G++ S +
Sbjct: 13 FKCKECGKAFRQNIHLASHLR-IHTGEKPSGPSS 45
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
S K ++C C S SL H +H GEK
Sbjct: 3 SGSS-GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 42.9 bits (102), Expect = 4e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C C F+ +++++H +H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ G ++C C + ++L++H H GEK
Sbjct: 3 SGSSGMGEKT-WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 39.8 bits (94), Expect = 6e-05
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ GEK + C C F Q SS H H + +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 39.8 bits (94), Expect = 6e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GEK + C++C F+Q +SL H+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK + C C F+ SL +H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+ CD F +L+LH +H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPS 41
Score = 32.5 bits (75), Expect = 0.021
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C C F L+ H VH ++P +
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.065
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + + + C C F L H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 31.0 bits (71), Expect = 0.066
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ ++ + C C F + L+ H H+ +P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.099
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ ++ + C C F LR H VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 29.4 bits (67), Expect = 0.26
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + ++C CD F+ + LR H+ VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 26.7 bits (60), Expect = 2.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
+ C EC F L H+
Sbjct: 13 WKCRECDMCFSQASSLRLHQ 32
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 373 QRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S K ++C CG G + K L+ H RIHTGEK
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ + + HQC CG+ F +++ H RIHTGEK +
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ + +QC+ CGR +++L H R HTGEK
Sbjct: 2 SSGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 1e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+ K + C +CG FT + L H+ H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+ K + C CG F L LN H HT
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ + K + C CG+GF S H H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 36.8 bits (86), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + + C C GF K HL+QH R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
QC C R F +L H RIHTGEK
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPS 41
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ ++ + C+ C F LK HL QH ++H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 32.5 bits (75), Expect = 0.024
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + + + C CG+ F LKSHL H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFT----LKSHLNQH 31
Score = 31.7 bits (73), Expect = 0.042
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CG+ F +K L +H +HT ++P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.58
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
+ C CGR + K LNQH +IH
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
+ C ECG+ F K L H+ +H G++ S +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR-IHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 2.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ S +++ QC C + F + L +H+R+H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + +L H IHTGEK
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+ +NL H HTGEK
Sbjct: 3 SGSSGTGEKP-YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C+ CGKAF +N+ H IHTGEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG +F ++L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F +L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F S+ H H+ + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + ++C C +AF NL H IHTGEK
Sbjct: 2 SSGSSG----TGE----------KPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.026
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK FR L H +HT ++P +
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.10
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F S+LTTH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRA----HSNLTTH 31
Score = 30.6 bits (70), Expect = 0.11
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F+ +L H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 30.6 bits (70), Expect = 0.11
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F+ +L+ H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 28.2 bits (64), Expect = 0.70
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C ECGK+F+ L H+ +H G++ S
Sbjct: 13 YKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.5 bits (109), Expect = 4e-07
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + L H IHTGEK
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 5e-07
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+V ++L H HTGEK
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG FTQ + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C+ CGK F +++ H IHTGEK +
Sbjct: 14 KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.010
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F +L H IHTGEK
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPS 41
Score = 30.9 bits (71), Expect = 0.074
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 30.9 bits (71), Expect = 0.087
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.15
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL +H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 28.2 bits (64), Expect = 0.65
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F + SHL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQ----NSHLVRH 31
Score = 26.3 bits (59), Expect = 3.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F L H+
Sbjct: 13 YKCNECGKVFTQNSHLVRHR 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C CG L H+ +H+GE+
Sbjct: 3 SGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C +CG+ ++L H H+GE+
Sbjct: 2 SSGSSGTGEKP-YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C VCGKAF +++ H +H+GE+ +
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 42.5 bits (101), Expect = 7e-06
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
TGEK Y CQ CG +F + L H HS
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 39.0 bits (92), Expect = 9e-05
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C+VCGK F S H HS R +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C+ CG +F + L H H+
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+VC +AF +L H +H+GE+
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
Score = 32.9 bits (76), Expect = 0.015
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C VCGK FR+ L +H +VH+ +RP +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 31.3 bits (72), Expect = 0.055
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 232 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C +C F++ HL QH+ VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ C F+ HL QHH H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.9 bits (63), Expect = 1.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C+ CGK F SHL H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRV----SSHLVQH 31
Score = 25.6 bits (57), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
Y C+ CGK+F+ L H VH G++ S +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY C+ CG L+ H R+HT E
Sbjct: 3 SGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y CN+CG+ +L H+R HT E
Sbjct: 2 SSGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ C+VCGKAF ++ H+R+HT E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C VCGK FV + H+ H++ +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C CG +F A L H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG +F L LN H HT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 36.3 bits (85), Expect = 8e-04
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 512 QHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + + C VC +AF +L H+R+HT E
Sbjct: 2 SSGSSG----TGE----------KPYSCNVCGKAFVLSAHLNQHLRVHTQETLS 41
Score = 34.0 bits (79), Expect = 0.007
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 232 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN+C F L HL QH +VH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+VCGK F + L +H+ VHT + +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL+QH R H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 29.0 bits (66), Expect = 0.38
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F+ +HL H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVL----SAHLNQH 31
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
Y+C CGK+F L H VH + S +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
KPYEC C L+ H R+HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 44.1 bits (105), Expect = 2e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++C C K F I ++ H R+HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ +G P Y+C C + +L H R HTGE+
Sbjct: 2 SSGSSGSGKKP-YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ +G+K Y C+ C K F+Q H H+ R+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+G+K Y C++C +F Q L HK H+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 36.4 bits (85), Expect = 8e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+G+K Y C+ C +F G LN H HT
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++CK C + F + +L H R+HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSS 41
Score = 34.4 bits (80), Expect = 0.005
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C C K F L +H VHT +R +
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C+ C F HL+QH R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 32.1 bits (74), Expect = 0.028
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ + K+ Y C+ C K F+++ L H H R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 31.7 bits (73), Expect = 0.040
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + +P+ C C TF HL QH +VH
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 27.9 bits (63), Expect = 0.84
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C+EC K+F L HK VH G++ S
Sbjct: 13 YECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 26.3 bits (59), Expect = 3.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ S + ++C C K F L +HKRVH
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQ 415
KPY+C CG L++H RIHTG +
Sbjct: 3 SGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 44.8 bits (107), Expect = 8e-07
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ +G P Y+C+ CG+ + T+L H R HTG +
Sbjct: 2 SSGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
++CS CGKAF T++ H RIHTG +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+GEK Y C +CG +F + L H+ H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C CG +F LN H HT
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GEK Y C CGK F + + H H+ R +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C +AF +L H RIHTG +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
Score = 31.3 bits (72), Expect = 0.051
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F L EH +HT RP +
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 30.5 bits (70), Expect = 0.11
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ C+ C F HL +H ++H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 30.2 bits (69), Expect = 0.14
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL++H R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 29.0 bits (66), Expect = 0.39
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ Y C CGK F + +HL H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHR----HTHLNEH 31
Score = 26.7 bits (60), Expect = 2.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F L H+
Sbjct: 13 YKCSECGKAFHRHTHLNEHR 32
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + L H IHTGEK
Sbjct: 3 SGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+V ++L H HTGEK
Sbjct: 3 SGSSGTGKKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TG+K Y C +CG FTQ + L H+ H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCE 162
+C+ CGK F +++ H IHTGEK
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 301 VHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TG+K Y C CGK F Q S H H+ + +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 148 VHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TG+K Y C CG F L H HT
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ ++C C + F +L H IHTGEK
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 30.9 bits (71), Expect = 0.074
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T +P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.6 bits (70), Expect = 0.096
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL++H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.6 bits (65), Expect = 0.48
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T K+ Y C CGK F + SHL H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQ----NSHLARH 31
Score = 26.3 bits (59), Expect = 3.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F L H+
Sbjct: 13 YKCNECGKVFTQNSHLARHR 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-07
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + L H R+HTG K
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+V ++L H R HTG K
Sbjct: 3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 42.1 bits (100), Expect = 9e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG FTQ + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C+ CGK F +++ H R+HTG K +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F +L H R+HTG K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPS 41
Score = 31.0 bits (71), Expect = 0.076
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F HL +H +VH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.0 bits (71), Expect = 0.077
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H VHT +P +
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL++H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.1 bits (61), Expect = 1.6
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ Y C CGK F + L H H +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 25.6 bits (57), Expect = 6.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F L H+
Sbjct: 13 YKCNECGKVFTQNSHLARHR 32
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C+ CG + L H IHTGEK
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+CN CG+V ++L H HTGEK
Sbjct: 3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG FTQ + L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+C+ CGK F +++ H IHTGEK +
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F Q S H H+ + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.011
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F +L H IHTGEK
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 30.9 bits (71), Expect = 0.072
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.075
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L H +HT ++P +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.084
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F HL++H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.9 bits (63), Expect = 0.93
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F + SHL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQ----NSHLARH 31
Score = 26.3 bits (59), Expect = 3.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK F L H+
Sbjct: 13 YKCNECGKVFTQNSHLARHR 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.5 bits (109), Expect = 6e-07
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P Y+C+ CG+V ++L H HTGEK
Sbjct: 2 SSGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 8e-07
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY+C CG L H IHTGEK
Sbjct: 3 SGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
++C CGK F +++ H IHTGEK +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 1e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK Y C +CG F + + L H+ H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK Y C CGK F + S H H+ + +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 37.8 bits (89), Expect = 2e-04
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK Y C CG F L H HT
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT 36
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C C + F +L H IHTGEK
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK FR L H +HT ++P +
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.030
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P+ C+ C F+ HL +H +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 30.1 bits (69), Expect = 0.15
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P+ C C F+ HL++H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 28.2 bits (64), Expect = 0.76
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ Y C CGK F + SHL H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRR----NSHLARH 31
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y C ECGK F+ L H+ +H G++ S
Sbjct: 13 YKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++C CG + + L H R+HTGEK
Sbjct: 3 SGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P ++C CG+ N R +L H R HTGEK
Sbjct: 2 SSGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C CGK++ ++ H R+HTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK + C +CG S+ Q L H+ H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C CG S+ L H HT
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C CGK + Q H H+ + +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
F+C C +++ +L H R+HTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.030
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C C ++ + HL QH +VH
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 32.1 bits (74), Expect = 0.031
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK + + L +H VHT ++P +
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.052
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +PF C C + + HL+QH R H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 28.3 bits (64), Expect = 0.73
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T ++ + C CGK + + + HLT H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQ----RVHLTQH 31
Score = 26.7 bits (60), Expect = 2.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 2 YACEECGKSFKTKIQLCAH 20
+ C ECGKS+ ++ L H
Sbjct: 13 FKCGECGKSYNQRVHLTQH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 45.3 bits (108), Expect = 6e-07
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
+ YEC CG K SL H RIHTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 41.8 bits (99), Expect = 1e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKY 159
++C CGK+F ++ +H RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.1 bits (92), Expect = 8e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 276 TNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKY 312
++ +G Y+C CG+ + +L +H R HTG
Sbjct: 2 SSGSSGQRV-YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.6 bits (88), Expect = 4e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
+G++ Y CQ+CG SF Q SL H+ H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+ C ++F +L LH RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+G++ Y C+ CG SF GSL +H HT
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 33.7 bits (78), Expect = 0.008
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+G++ Y C+ CGK F Q S H H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 29.8 bits (68), Expect = 0.15
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPF 243
C CGK FR K L H +HT P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.5 bits (67), Expect = 0.22
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ R + C C +F+ K L H ++H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 28.3 bits (64), Expect = 0.63
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C+ECGKSF+ K L H
Sbjct: 11 YECQECGKSFRQKGSLTLH 29
Score = 27.9 bits (63), Expect = 0.86
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 487 TTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ R + C+ C F+ K L+ H R H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.5 bits (62), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 459 NTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+ + +R+Y C+ CGK F + K LT H
Sbjct: 3 SGSSGQRVYECQECGKSFRQ----KGSLTLH 29
Score = 25.2 bits (56), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 33 CDTCGRTYKTKHSLNQHMKIH 53
C CG++++ K SL H +IH
Sbjct: 13 CQECGKSFRQKGSLTLHERIH 33
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 7e-07
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S + + C CG + H RIHTGEK
Sbjct: 3 SGSS-GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
H+CS CGK F +N H RIHTGEK +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ G ++C+ CG+ +N H R HTGEK
Sbjct: 2 SSGSSGHGERG-HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 6e-05
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GE+ + C CG F Q ++ H+ H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ GE+ + C CGK F+Q S+ H H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 37.1 bits (87), Expect = 6e-04
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GE+ + C CG F + H HT
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 528 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ R +C C + F N H RIHTGEK
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.018
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ R C C F + QH R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 31.7 bits (73), Expect = 0.039
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ +R + C CGK F++ S+ H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQ----ASNFIQH 31
Score = 31.0 bits (71), Expect = 0.071
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 206 RNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
+S + C CGK F +H +HT ++P +
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.12
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ +R C+ C F + QH ++H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
+ C +CGK F H+ +H G++ S
Sbjct: 13 HRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.6
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ R +C+ C K F + +H+R+H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 8e-07
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S KP +C CG K L H R H +K
Sbjct: 3 SGSS-GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+C+ CGKAF + + +H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 274 RHTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P +C CG+ ++ L +H R H +K
Sbjct: 2 SSGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK C CGK F S H TH + ++ +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 39.5 bits (93), Expect = 8e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
TGEK C +CG +F + L H+ +H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK C CG +F L +H +H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+C C +AF L +H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHS 41
Score = 34.5 bits (80), Expect = 0.004
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ +P C C F K L H RTH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 32.9 bits (76), Expect = 0.015
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C CGK F K QL H H D+ +
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 32.5 bits (75), Expect = 0.023
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ C CGK F L H TH+ +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 31.0 bits (71), Expect = 0.086
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++P C C F K L H + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 29.1 bits (66), Expect = 0.34
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
C ECGK+F K QL H+ H + S
Sbjct: 13 CKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 26.4 bits (59), Expect = 3.3
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + + +CT C K F + L H+R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 46.8 bits (110), Expect = 9e-07
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 177 HSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAV 236
S + C C + SH R ++C C F +EH +
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEHES- 63
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQH 261
+ C C TFK + +H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 42.6 bits (99), Expect = 2e-05
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 126 ENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQ 185
EN +QC +C + + H R+ VC C F H +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKSICD 218
C C T+K+ ++ H H + +
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS 102
Score = 41.4 bits (96), Expect = 8e-05
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 272 LNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHM 331
+ + + YQC +C ++ H R +C C F H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
Query: 332 FTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNM 369
+ E + C C + F + + H +V V N+ NM
Sbjct: 63 -SKCEYKKLTCLECMRTFKSSFSIWRH-QVEVHNQNNM 98
Score = 41.0 bits (95), Expect = 9e-05
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQV 440
+ Y+C C LSS H R+ VC C F H+ S E +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE-SKCEYKKLT 71
Query: 441 CSYCGKTYKNPNHLRSH 457
C C +T+K+ + H
Sbjct: 72 CLECMRTFKSSFSIWRH 88
Score = 40.7 bits (94), Expect = 1e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFC 500
C C + SH + VC C F EL + H + + C C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEY-KKLTCLEC 75
Query: 501 SAGFKTKKHLSQHHRTHKRKDTL 523
FK+ + +H ++ +
Sbjct: 76 MRTFKSSFSIWRHQVEVHNQNNM 98
Score = 37.2 bits (85), Expect = 0.002
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 407 GEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRL 466
++ Y C+ C A + H+ VC YC + +P + H + + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 467 YVCETCGKEFMKLELLKSH 485
C C + F + H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 34.5 bits (78), Expect = 0.021
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 18/91 (19%)
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLD 399
+QC +C+ K ++ H+R+ C C S +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNA-----------------AVCPYCSLRFFSPELKQ 59
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHK 430
+H KK C +C +F S++ H+
Sbjct: 60 EH-ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 33.0 bits (74), Expect = 0.066
Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 99 EKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKK 158
++ Y C +C H + C C F + H KK
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAA---VCPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 159 YVCETCGASFALWGSLNVH 177
C C +F S+ H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 29.5 bits (65), Expect = 1.0
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVR 57
Y C C + ++ +H+ L +VC C + + +H +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEHESKCEYKK 69
Score = 28.7 bits (63), Expect = 1.7
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 58 GKKNAIHVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNL 117
G + + + K Y+C C+ + S SH + C C F
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELK 58
Query: 118 VCHIKAVHENVREHQCSVCGKAFADITNMKVH 149
H ++ C C + F ++ H
Sbjct: 59 QEH--ESKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 28.3 bits (62), Expect = 2.7
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 16/86 (18%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHT 276
C +C + + H + VC C F + ++H E+
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH-------ESK----- 64
Query: 277 NIHTGPGYQCNICGRVMNDRTNLKVH 302
C C R ++ H
Sbjct: 65 --CEYKKLTCLECMRTFKSSFSIWRH 88
Score = 27.6 bits (60), Expect = 4.8
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 11/74 (14%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKR-----------KDTLENHMKAVHEKIRDFQCKV 541
+ C C+A + H R + + + C
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74
Query: 542 CDRAFFDVYNLKLH 555
C R F +++ H
Sbjct: 75 CMRTFKSSFSIWRH 88
Score = 26.8 bits (58), Expect = 9.7
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 26 EGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIVVS 85
E K+ C C + H ++ + + CP CS+ S
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLC-----------------RNAAVCPYCSLRFFS 54
Query: 86 YSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
+ H + K+ C C + F + ++ H VH
Sbjct: 55 PELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 9e-07
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
K + CD CG +L H R+H GEK
Sbjct: 3 SGS-SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
H C CGK F I+ +++H R+H GEK +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK + C+ CG +F +L +H H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 40.7 bits (96), Expect = 3e-05
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ +G + C+ CG+ + L++H R H GEK
Sbjct: 3 SGSSGSGEKS-HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 40.3 bits (95), Expect = 4e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GEK + C +CG +F ++L H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
+ +GEK + C+ CGK F S+ H H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 34.1 bits (79), Expect = 0.006
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
C C + F + L++H R+H GEK
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCS 41
Score = 31.8 bits (73), Expect = 0.038
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++ C+ C F LR H +VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 31.4 bits (72), Expect = 0.048
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ + C+ C F L H R H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 30.3 bits (69), Expect = 0.12
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + ++ + C+ CGK F + L+ H H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 29.5 bits (67), Expect = 0.27
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDT 35
+ C+ECGK+F L H+ VH G++ S +
Sbjct: 13 HTCDECGKNFCYISALRIHQR-VHMGEKCSGPSS 45
Score = 29.1 bits (66), Expect = 0.36
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
CD CGK F L+ H VH ++ +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 1e-06
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETR 437
TGEK + C++CG +F+ SLF H SH T
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 43.0 bits (102), Expect = 4e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ TGEK + C+ CG F S + H+ +H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 42.2 bits (100), Expect = 8e-06
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KP++C CG S SL H R H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.8 bits (99), Expect = 1e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGEK + C+ CG +F+ SL H SH
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P +QC CG + +L H+R+H
Sbjct: 3 SGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
QC CG F+ ++ H+R H +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 36.8 bits (86), Expect = 6e-04
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ T ++ + C+ CG F L HL +H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
FQCK C F +L H+R H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPS 41
Score = 32.2 bits (74), Expect = 0.028
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKR 519
S ++ +PF C+ C F L +H R+H+R
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 31.4 bits (72), Expect = 0.052
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CG F L +H+ H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 30.6 bits (70), Expect = 0.087
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T ++PF C C F L +H + H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 27.2 bits (61), Expect = 2.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
+ C+ECG +F L H
Sbjct: 13 FQCKECGMNFSWSCSLFKHL 32
Score = 25.6 bits (57), Expect = 6.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHS 54
C CG + SL +H++ H
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHE 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
+ GEK Y CE CG FVQ + H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
KPY+C+TCG L H IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKY 159
++C CG F + +++ H+ IHTG
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKY 312
+ G P Y+C CG +L+ H+ HTG
Sbjct: 2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 42.1 bits (100), Expect = 7e-06
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GEK Y CETCGA F L H HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 41.7 bits (99), Expect = 9e-06
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
GEK Y C+ CGA F Q A L H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
++C+ C F V +L+ H+ IHTG
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 34.4 bits (80), Expect = 0.005
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 485 HLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ +P+ CE C A F HL H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 33.7 bits (78), Expect = 0.009
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+ ++ Y CETCG F+++ L++H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.9 bits (76), Expect = 0.015
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
++P+ C C + F HLR H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 31.3 bits (72), Expect = 0.045
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPF 243
C+ CG F L+ H+ +HT P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 31.0 bits (71), Expect = 0.074
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + ++C C +F A LR H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 26.3 bits (59), Expect = 2.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y CE CG F L AH
Sbjct: 12 YKCETCGARFVQVAHLRAHV 31
Score = 25.9 bits (58), Expect = 4.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 33 CDTCGRTYKTKHSLNQHMKIH 53
C+TCG + L H+ IH
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 373 QRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
S PYEC CG S K L H + H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
++C CGK F+ + H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ TG P Y+C CG+V + + L H + H+G+
Sbjct: 3 SGSSGTGENP-YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
TGE Y C +CG F++ L H+ +HS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ TGE Y C CGK F + H THS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
TGE Y C CG F+ L H +H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 33.2 bits (77), Expect = 0.011
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ P+ C C F K L H +TH
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T + Y C CGK F + K L +H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSR----KDQLVSH 31
Score = 32.1 bits (74), Expect = 0.028
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYLS 567
++C C + F L H + H+G+ S
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.9 bits (71), Expect = 0.066
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T + P+ C C F K L H K H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C CGK F K QL H H+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.0 bits (66), Expect = 0.39
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C ECGK F K QL +H
Sbjct: 13 YECCECGKVFSRKDQLVSH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 44.2 bits (105), Expect = 1e-06
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
GE Y+C QCG SFTQ SL H+ S S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 43.4 bits (103), Expect = 3e-06
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKY 411
PY C CG + + SL H R +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 42.3 bits (100), Expect = 6e-06
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKY 159
+ C CGK+F ++ VH R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 41.9 bits (99), Expect = 9e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
+ GE Y+C CGK F Q S H + S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKY 312
+ G P Y C CG+ R +L VH R+ +
Sbjct: 2 SSGSSGGETP-YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 39.6 bits (93), Expect = 5e-05
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GE Y+C CG SF GSL VH S +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 38.0 bits (89), Expect = 2e-04
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C ++F +L +H R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 31.9 bits (73), Expect = 0.030
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 216 ICDVCGKEFRMKRQLKEHMAVHTTDRPF 243
+C CGK F + L H + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 28.8 bits (65), Expect = 0.40
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ P++C C +F + L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.8 bits (65), Expect = 0.48
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 488 THLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ P++C C F + L+ H R+
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.0 bits (63), Expect = 0.73
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
G+ +C CG+++ + SL H + S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 27.6 bits (62), Expect = 0.98
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 2 YACEECGKSFKTKIQLCAH 20
Y C +CGKSF + L H
Sbjct: 12 YLCGQCGKSFTQRGSLAVH 30
Score = 26.9 bits (60), Expect = 2.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPF 495
+ + Y+C CGK F + L H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 25.7 bits (57), Expect = 5.2
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + C C K F L H+R
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 46.9 bits (110), Expect = 1e-06
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 87 SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNM 146
SG K +L H K F H+ + R L K + + + + D ++
Sbjct: 8 SGSKKYLSNH---KGIFIHVTLEELKRYHQLTPEQKRLIRAIV--KTLIHNPQLLDESSY 62
Query: 147 KVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIR 206
+ ++VC C F+ SL H +T VC C + + + H+
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT-KVCPVCKKEFTSTDSALDHVC 121
Query: 207 NSHTI 211
H I
Sbjct: 122 KKHNI 126
Score = 39.1 bits (90), Expect = 7e-04
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 416 CGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKE 475
+S Y + VC C + + L+ H+ VC C KE
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKE 109
Query: 476 FMKLELLKSHL 486
F + H+
Sbjct: 110 FTSTDSALDHV 120
Score = 37.6 bits (86), Expect = 0.002
Identities = 21/118 (17%), Positives = 30/118 (25%), Gaps = 20/118 (16%)
Query: 444 CGKTYKNPNHLRSHLNTHTKKRLYVC----ETCGKEFMKLELLKSHLTTHLAARPFICEF 499
R H T +KRL + + L A F+C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 500 CSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR 557
C F + L QH R + C VC + F + H+
Sbjct: 80 CLMPFSSSVSLKQHIRYTE----------------HTKVCPVCKKEFTSTDSALDHVC 121
Score = 36.8 bits (84), Expect = 0.004
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 269 ENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHY 328
++L R + C +C + +LK H+R E +C VC K F S
Sbjct: 60 SSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSAL 117
Query: 329 YHM 331
H+
Sbjct: 118 DHV 120
Score = 35.3 bits (80), Expect = 0.016
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 73 SYKCPDCSVIVVSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
+ CP C + S K H+ E C +CKK F + + H+ H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 30.3 bits (67), Expect = 0.65
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 18/122 (14%)
Query: 282 PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQ 341
G ++ + L + + + SS+ Y + F
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYRLLASKAISQFV 76
Query: 342 CTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDH 401
C +C F++ L++H R C C +S S DH
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYT-----------------EHTKVCPVCKKEFTSTDSALDH 119
Query: 402 YR 403
Sbjct: 120 VC 121
Score = 29.1 bits (64), Expect = 1.8
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 17/128 (13%)
Query: 179 YSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 238
Y + K LT + K++ + + +
Sbjct: 13 YLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLI--HNPQLLDESSYLYRLLASK 70
Query: 239 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTN 298
FVC +C F L+QH + C +C + +
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEH---------------TKVCPVCKKEFTSTDS 115
Query: 299 LKVHMRNH 306
H+
Sbjct: 116 ALDHVCKK 123
Score = 28.7 bits (63), Expect = 2.5
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMK 51
+ C C F + + L H + + VC C + + + S H+
Sbjct: 75 FVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKKEFTSTDSALDHVC 121
Score = 28.0 bits (61), Expect = 3.9
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 10/109 (9%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHR 515
S +++ +KK L + EL + H T R + H
Sbjct: 4 SDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTL----------IHN 53
Query: 516 THKRKDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
++ + + I F C +C F +LK H+R K
Sbjct: 54 PQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV 102
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ +G P Y CN CG+ ++L H++ H EK
Sbjct: 3 SGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+PY C+ CG L +H + H EK
Sbjct: 3 SGS-SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCET 163
+ R + C+ CGK F +++ H++ H EK +
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 42.1 bits (100), Expect = 8e-06
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCS 442
+GE+ Y C +CG +F + + L H H ++ S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ +GE+ Y C CGK F + S H+ H ++ +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GE+ Y C CG +F L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFIC 497
S ++ + +R Y C CGK F + L HL H +
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 34.0 bits (79), Expect = 0.006
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 565
+ C C + F +L H++ H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSS 41
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + +RP+ CN C F HL +H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 33.3 bits (77), Expect = 0.010
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
S ++ RP+ C C F HL +H + H
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.5 bits (75), Expect = 0.023
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCN 246
C+ CGK F L EH+ H ++ +
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 27.1 bits (61), Expect = 1.9
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ S R + C C K F + L EH + H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 25.9 bits (58), Expect = 4.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 2 YACEECGKSFKTKIQLCAHK 21
Y C ECGK+F L H
Sbjct: 13 YGCNECGKNFGRHSHLIEHL 32
Score = 25.6 bits (57), Expect = 7.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHS 54
C+ CG+ + L +H+K H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHF 36
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 44.1 bits (105), Expect = 2e-06
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 372 HQRSVHELLKPYECDTCGHGLSSKKSLDDHYR-IHTGEKKYVC 413
KPYEC CG SL H+R HTGEK
Sbjct: 3 SGS-SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.2 bits (100), Expect = 7e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYH 429
TG+K Y C +CG +F Q SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 40.2 bits (95), Expect = 4e-05
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRN-HTGEKKYIC 314
+ TG P Y+C CG+ T+L H R HTGEK
Sbjct: 3 SGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 131 HQCSVCGKAFADITNMKVHMR-IHTGEKKYVC 161
++C CGKAF T++ H R HTGEK
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 42/84 (50%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRV 361
+ TG+K Y C CGK F+Q +S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTS----------------------------------- 27
Query: 362 HVTNRKNMIDHQRSVHELLKPYEC 385
+I H R H KP
Sbjct: 28 -------LIRHWRYYHTGEKPSGP 44
Score = 36.8 bits (86), Expect = 6e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVH 177
TG+K Y C CG +F SL H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 16/57 (28%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTG--PGYQCN 287
+ T +P+ C C F L +H++ HTG P +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWR-------------YYHTGEKP-SGPS 45
Score = 29.8 bits (68), Expect = 0.20
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEG 27
Y C ECGK+F L H H G
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 29.5 bits (67), Expect = 0.28
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T K+ Y C CGK F++ + L H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQ----NTSLIRH 31
Score = 29.5 bits (67), Expect = 0.29
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 537 FQCKVCDRAFFDVYNLKLHMR-IHTGEKKY 565
++C C +AF +L H R HTGEK
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPS 42
Score = 28.3 bits (64), Expect = 0.65
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 217 CDVCGKEFRMKRQLKEHM-AVHTTDRPFVCN 246
C CGK F L H HT ++P +
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 25.6 bits (57), Expect = 6.4
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRT 516
S ++ +P+ C C F L +H R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
T K Y C +CG +FT+ L H+ H+
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 371 DHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
K Y C+ CG + L H +IHT +
Sbjct: 2 SSGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
T K Y C CG +F L H HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 36.8 bits (86), Expect = 6e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 275 HTNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
+ T Y CN CG+ +L H + HT +
Sbjct: 3 SGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ C+ CGKAF I ++ H +IHT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
+ T K Y C CGK F + H H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 232 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ T + + CN C F HL +H K+H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 33.3 bits (77), Expect = 0.012
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 529 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLS 567
+ + C C +AF +++L H +IHT + S
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 30.6 bits (70), Expect = 0.095
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRK 520
S ++ ++ + C C F HL++H + H RK
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 27.9 bits (63), Expect = 0.77
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ T + Y C CGK F + HLT H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTR----IFHLTRH 31
Score = 26.4 bits (59), Expect = 3.0
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ ++S+++ C C K F L H+++H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 46.0 bits (108), Expect = 4e-05
Identities = 7/58 (12%), Positives = 14/58 (24%)
Query: 432 SHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+ ++ T + Y C C L +H+ +H
Sbjct: 146 NQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 42.9 bits (100), Expect = 3e-04
Identities = 12/52 (23%), Positives = 16/52 (30%)
Query: 313 ICEVCGKGFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVT 364
I E + + T S +QC VC +P L H H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 41.8 bits (97), Expect = 6e-04
Identities = 12/71 (16%), Positives = 19/71 (26%)
Query: 469 CETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMK 528
E K T + + C CSA + L H +H +
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSS 214
Query: 529 AVHEKIRDFQC 539
+ I +F
Sbjct: 215 EIQRHITEFIS 225
Score = 41.4 bits (96), Expect = 9e-04
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQ 439
+ +S + + Y C C A L H SH N
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 39.5 bits (91), Expect = 0.003
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 124 VHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTN 183
+ +QC VC ++ H+ H +L
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH-------------GLHGNMTLTSSEIQRHI 220
Query: 184 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSI 216
T+F+ S+ + A + + + +H +
Sbjct: 221 TEFISSWQNHPIVQVSADVENKKTAQLLHADTP 253
Score = 36.8 bits (84), Expect = 0.021
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 279 HTGPGYQCNICGRVMNDRTNLKVHMRNH 306
+G GYQC++C V+ +L H+ +H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.8 bits (84), Expect = 0.025
Identities = 7/55 (12%), Positives = 13/55 (23%)
Query: 285 QCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRN 339
+++ + Y C VC H+ +H N
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 35.6 bits (81), Expect = 0.050
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 530 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIH--TGEKKYLSMRMSENISA 576
+QC VC F +L H+ H G S + +I+
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITE 222
Score = 34.8 bits (79), Expect = 0.097
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 413 CQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTH 461
+ A ++ + + S C C +P L +H+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.4 bits (78), Expect = 0.12
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 184 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH 237
+ + A + + H C VC L H+A H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHG-YQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.7 bits (76), Expect = 0.20
Identities = 7/54 (12%), Positives = 10/54 (18%), Gaps = 1/54 (1%)
Query: 3 ACEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDV 56
E G C C + L+ H+ H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGY-QCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 33.7 bits (76), Expect = 0.21
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 6/71 (8%)
Query: 362 HVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIH-----TGEKKYVCQQC 416
+ ++ Y+C C L S LD H H Q+
Sbjct: 160 AIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219
Query: 417 GASFTQ-WASL 426
F W +
Sbjct: 220 ITEFISSWQNH 230
Score = 33.7 bits (76), Expect = 0.22
Identities = 9/65 (13%), Positives = 13/65 (20%), Gaps = 2/65 (3%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSH--TNTQFVCS 189
+ + Y C C A L+ H SH + S
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTS 213
Query: 190 YCGNT 194
Sbjct: 214 SEIQR 218
Score = 33.3 bits (75), Expect = 0.30
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 215 SICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTF----KLKKHLRQH 261
I + ++ + C++C + L H+ H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.81
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 178 SYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 210
+ + + C C +P L +H+ +
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 124 VHENVREHQCSV--CGKAFADITNMKVHMRIHTGEKKYVCET 163
+ C+ CG F+ + H R H+G K +
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 38.1 bits (89), Expect = 3e-04
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 302 HMRNHTGEKKYIC--EVCGKGFVQWSSHYYHMFTHSESRNFQCT 343
+ TGEK + C CG F + H +HS + +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 149 HMRIHTGEKKYVC--ETCGASFALWGSLNVHSYSHTNTQ-FVCS 189
TGEK + C CG F+ L+ H SH+ + S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 456 SHLNTHTKKRLYVC--ETCGKEFMKLELLKSHLTTHLAARPFICE 498
S ++ T ++ + C CG F + + L H +H +P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 36.1 bits (84), Expect = 0.001
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 372 HQRSVHELLKPYECD--TCGHGLSSKKSLDDHYRIHTGEKKYVCQ 414
S KP+ C CG S L H R H+G K
Sbjct: 3 SGSS-GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 35.7 bits (83), Expect = 0.002
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 275 HTNIHTG--PGYQCN--ICGRVMNDRTNLKVHMRNHTGEKKYICE 315
+ TG P + C CG + L H R+H+G K
Sbjct: 3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 35.4 bits (82), Expect = 0.002
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 401 HYRIHTGEKKYVCQQ--CGASFTQWASLFYHKFSHSETRNQVCS 442
TGEK + C CG F++ L H+ SHS + S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 33.4 bits (77), Expect = 0.011
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 12/52 (23%)
Query: 516 THKRKDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 565
+ T E + F C C F L H R H+G K
Sbjct: 2 SSGSSGTGE----------KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPS 43
Score = 31.9 bits (73), Expect = 0.039
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 203 SHIRNSHTIHQKSICDV--CGKEFRMKRQLKEHMAVHTTDRPFVCN 246
S S T + C CG F +L H H+ +P +
Sbjct: 2 SSGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.0 bits (68), Expect = 0.16
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 484 SHLTTHLAARPFICEF--CSAGFKTKKHLSQHHRTH 517
S ++ +PF C + C F LS+H R+H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 25.7 bits (57), Expect = 6.4
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 17/58 (29%)
Query: 233 HMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPG-YQCN 287
+ T ++PF C C F + L+RH H+G +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRS--------------DELSRHRRSHSGVKPSGPS 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 29/176 (16%)
Query: 22 ELVHEGKQRSV--CDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDC 79
+V++ + S+ T + S+ +K+ + + V++ N ++ D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 80 SVIVV-SYSGFKSHLDIH--NVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVC 136
+ Y F SH+ H N+E + + VFL R L I+ H +
Sbjct: 465 IPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--------HDSTAW 514
Query: 137 GKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSL---------NVHSYSHTN 183
A I N ++ + K Y+C+ L ++ N+ +T+
Sbjct: 515 N-ASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 36.8 bits (84), Expect = 0.021
Identities = 66/580 (11%), Positives = 139/580 (23%), Gaps = 163/580 (28%)
Query: 64 HVNNINKKVSYKCPDCSVIVVSYSGFKSHLDIHNVE--------KEYFCHICKKVFLRNR 115
H++ + Y+ D ++ V F + D +V+ KE HI + ++
Sbjct: 6 HMDFETGEHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-----IMSK 58
Query: 116 NLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLN 175
+ V + + Q + K ++ Y F L +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----------RINY-------KF-LMSPIK 99
Query: 176 VHSYSHT-NTQFVCSYCGNTYKNPKALTS-HIRNSHTIHQ--------KSICDV------ 219
+ T+ Y + + ++ + + +V
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 220 -CGKEFRMKRQLKEHMAVHT-TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTN 277
GK + +A+ C M F L L+ +E
Sbjct: 160 GSGKTW---------VALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQ 208
Query: 278 IHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKY-IC-----EVCGKGFVQWSSHYYHM 331
I + + + +++ +R K Y C V ++ ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-------QNAKAWNA 261
Query: 332 FTHSESRNFQC----TVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLK------ 381
F N C T K+ + + + + LLK
Sbjct: 262 F------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 382 -----------PYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHK 430
P + + D+++ H K T +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDK---------LTTIIESSLNV 365
Query: 431 FSHSETRNQVCSYCGKTYKN----PNHLRSHLNTHTKKRL------YVCETCGKEFMKLE 480
+E R K + P +H+ T + + K
Sbjct: 366 LEPAEYR--------KMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 481 LLKSHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMKAVHEKIRD---F 537
L++ K+ + + A+H I D
Sbjct: 416 LVEKQ--------------------PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 538 QCKVCDRAFF----DVY---NLKLHMRIHTGEKKYLSMRM 570
D Y ++ H++ ++ RM
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Score = 32.9 bits (74), Expect = 0.35
Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 50/197 (25%)
Query: 252 FKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKK 311
+LK L Y +H + +H N + + D +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPK------TFDSDDLIPPYLD---------------Q 471
Query: 312 YICEVCGKGFVQWSSHYYHMFT--HSESRN-FQCTVCDKKFATPAGLREHKRVHVTNRKN 368
Y G +H+ H E F+ D +F E K H + N
Sbjct: 472 YFYSHIG----------HHLKNIEHPERMTLFRMVFLDFRFL------EQKIRHDSTAWN 515
Query: 369 MIDHQRSVHELLKPYE---CDTCGHGLSSKKSLDD--HYRIHTGEKKYVCQQCGASFTQW 423
+ + LK Y+ CD ++ ++ + E + +
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENLICSKYT--DLLRI 570
Query: 424 ASLFYHKFSHSETRNQV 440
A + + E QV
Sbjct: 571 ALMAEDEAIFEEAHKQV 587
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
KPY C C S L H ++HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 403 RIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
+GEK Y C +C +F+ L H+ H+
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 35.4 bits (82), Expect = 0.002
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 131 HQCSVCGKAFADITNMKVHMRIHTGEKKYVC 161
+ C+ C + F+D + H ++HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.8 bits (78), Expect = 0.006
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 235 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + ++P+ C C TF L QH K+H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 33.1 bits (76), Expect = 0.013
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
+GEK Y C C + F + H H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 32.7 bits (75), Expect = 0.016
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 276 TNIHTG--PGYQCNICGRVMNDRTNLKVHMRNHTGEKKYIC 314
++ +G P Y C C +D L H + HT +
Sbjct: 2 SSGSSGEKP-YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 32.7 bits (75), Expect = 0.016
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
+GEK Y C C +F+ L H HT
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 31.9 bits (73), Expect = 0.033
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEKKYLS 567
+ C C F D L H ++HT + S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.1 bits (71), Expect = 0.069
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 487 TTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+ +P+ C C F L QH + H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 27.7 bits (62), Expect = 1.2
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 460 THTKKRLYVCETCGKEFMKLELLKSHLTTH 489
+ ++ Y C C + F + L H
Sbjct: 4 GSSGEKPYSCAECKETFSD----NNRLVQH 29
Score = 26.5 bits (59), Expect = 2.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
G++ C C T+ + L QH K+H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 26.1 bits (58), Expect = 3.4
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRSVC 33
Y+C EC ++F +L H++ +H K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
Score = 26.1 bits (58), Expect = 4.2
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVH 362
S + + C C + F+ L +H+++H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 25.4 bits (56), Expect = 6.3
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVC 245
C C + F +L +H +HT
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.8 bits (83), Expect = 0.001
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH 334
R TG K + C C + F + H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSH 433
R TG K + C C SF++ L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 34.2 bits (79), Expect = 0.004
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 268
T +PF C C +F HL H K H+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 33.8 bits (78), Expect = 0.005
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSH 181
R TG K + C C SF+ L +H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 32.7 bits (75), Expect = 0.015
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 485 HLTTHLAARPFICEFCSAGFKTKKHLSQHHRTH 517
+PF C C F HL+ H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.8 bits (70), Expect = 0.066
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 457 HLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHL 490
T + + C C + F + + L H H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 29.6 bits (67), Expect = 0.21
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVT 364
+ + FQC CD+ F+ L H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 29.2 bits (66), Expect = 0.26
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 531 HEKIRDFQCKVCDRAFFDVYNLKLHMRIH 559
I+ FQC CDR+F +L LH + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 0.89
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 125 HENVREHQCSVCGKAFADITNMKVHMRIH 153
++ QC C ++F+ ++ +H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 275 HTNIHTGPG-YQCNICGRVMNDRTNLKVHMRNH 306
T TG +QC C R + +L +H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.0 bits (55), Expect = 9.1
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 92 HLDIHNVEKEYFCHICKKVFLRNRNLVCHIK 122
K + C C + F R+ +L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 25.0 bits (55), Expect = 9.1
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIH 53
G + C C R++ L H K H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 484 SHLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRK 520
S ++ PF C C F + +L QH RTH RK
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 34.4 bits (79), Expect = 0.005
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
P++C C + + L H R H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 33.3 bits (76), Expect = 0.011
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 233 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ + PF C+ C F + +L QH + H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 32.9 bits (75), Expect = 0.014
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 401 HYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHS 434
GE + C +C FTQ L H+ +H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 32.1 bits (73), Expect = 0.025
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ +CS C + F + H R H +
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 31.8 bits (72), Expect = 0.038
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 274 RHTNIHTGPG-YQCNICGRVMNDRTNLKVHMRNHTGEK 310
+ G ++C+ C RV R L H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 31.4 bits (71), Expect = 0.048
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 537 FQCKVCDRAFFDVYNLKLHMRIHTGEK 563
F+C CDR F L H R H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 31.4 bits (71), Expect = 0.058
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVH 362
+ + F+C+ CD+ F L +H+R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 31.0 bits (70), Expect = 0.085
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 302 HMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHS 335
+ GE + C C + F Q + H TH+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 28.7 bits (64), Expect = 0.51
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 149 HMRIHTGEKKYVCETCGASFALWGSLNVHSYSHT 182
GE + C C F L H +H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.9 bits (62), Expect = 1.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 429 HKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
S + CS C + + N+L H TH +K
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 26.4 bits (58), Expect = 3.9
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH 489
S ++ + + C C + F + L H TH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 26.0 bits (57), Expect = 4.6
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRG 58
G+ C C R + ++ L QH + H+ G
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 25.2 bits (55), Expect = 9.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 91 SHLDIHNVEKEYFCHICKKVFLRNRNLVCH 120
S E + C C +VF + LV H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.7 bits (79), Expect = 0.003
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTGEK 157
++ + C C + FAD ++ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 32.4 bits (73), Expect = 0.017
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
++ + C C R F D L+ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.3 bits (70), Expect = 0.043
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
+KPY C C + +L H RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.8 bits (61), Expect = 0.82
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
Y C C R D L+ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.4 bits (60), Expect = 1.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 338 RNFQCTVCDKKFATPAGLREHKRVH 362
+ + C C ++FA P L+ H R+H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 437 RNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
+ VC +C + + +P L+ H+ HT ++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 39.7 bits (92), Expect = 0.003
Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 22/165 (13%)
Query: 307 TGEKKYICEVCGKGFVQWSSHY---------YH--MFTHSES-RNFQCTVCDKKFATPAG 354
T ++++ C+ CG+ H+ +H + + C C K +
Sbjct: 62 TIDRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSN 121
Query: 355 LREHKRVHVTNRKNMIDHQRSVHELLKP-YECDTCGHGLSSKKSLDDHYRIHTGEKKYVC 413
+ + + KN ++ V + K CDT + D++ +
Sbjct: 122 PKFNDTQRYRDPKNRLNA---VWNVCKTKMVCDTG------LSAGSDNFDLSNPSANMGH 172
Query: 414 QQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHL 458
CGA+ + + K +P + +
Sbjct: 173 GGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLEVHTIF 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.006
Identities = 50/271 (18%), Positives = 87/271 (32%), Gaps = 90/271 (33%)
Query: 279 HTGPGYQCNICGRVMNDRTNLKVHMRNHTGEK------KYICEVCGKGFVQW-------- 324
H Y +I V+N+ NL +H G++ I E G ++
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 325 --SSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLK- 381
S+ Y F + T +F PA + +++ E LK
Sbjct: 1712 EHSTSY--TFRSEKGLLSA-T----QFTQPA---------------LTLMEKAAFEDLKS 1749
Query: 382 ----PYECDTCGH--G----LSSKK---SLDD-----HYR----------IHTGEKKYVC 413
P + GH G L+S S++ YR G Y
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 414 -----QQCGASFTQWASLFYHKFSHSET-----------RNQ--VCSYCGKTYKNPNHLR 455
+ ASF+Q A + + T NQ V + G + + +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GDL-RALDTVT 1866
Query: 456 SHLNTHTKKRLYVCETCGKEFMKLELLKSHL 486
+ LN +++ + E ++ + LE ++ HL
Sbjct: 1867 NVLNFIKLQKIDIIEL--QKSLSLEEVEGHL 1895
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.007
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 229 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGPGYQCNI 288
+ + + C C H + H N+ Y C
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVD---------SEHPNVVLNSSYVCVE 55
Query: 289 CGRVMNDRTNLKVH-MRNHTGEKKYICEV 316
C + L H ++ H GE+ + +
Sbjct: 56 CNFLTKRYDALSEHNLKYHPGEENFKLTM 84
Score = 34.0 bits (77), Expect = 0.025
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 84 VSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVRE---HQCSVCGKAF 140
+++ + VE Y C C H+ + H NV + C C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 141 ADITNMKVH-MRIHTGEKKYVC 161
+ H ++ H GE+ +
Sbjct: 61 KRYDALSEHNLKYHPGEENFKL 82
Score = 32.8 bits (74), Expect = 0.069
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 144 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYS-----HTNTQFVCSYCGNTYKNP 198
+ + + E Y C+ C H S N+ +VC C K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 199 KALTSHIRNSHTIHQKSICDV 219
AL+ H H + +
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
Score = 32.8 bits (74), Expect = 0.070
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 452 NHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTH----LAARPFICEFCSAGFKTK 507
+H + + Y C+ C + L + H+ + + ++C C+ K
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 508 KHLSQHHRTH 517
LS+H+ +
Sbjct: 64 DALSEHNLKY 73
Score = 31.7 bits (71), Expect = 0.16
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 296 RTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTH----SESRNFQCTVCDKKFAT 351
+ + +N E Y C+ C + +H+ + + ++ C C+
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 352 PAGLREH 358
L EH
Sbjct: 63 YDALSEH 69
Score = 29.0 bits (64), Expect = 1.3
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 425 SLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTH----TKKRLYVCETCGKEFMKLE 480
+++ + C YC + N H+++ YVC C + +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 481 LLKSHLTTH 489
L H +
Sbjct: 65 ALSEHNLKY 73
Score = 29.0 bits (64), Expect = 1.6
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSHTIHQKS---ICDVCGKEFRMKRQLKEHMA-VHTTDR 241
+ C YC + T H+ + H + +C C + L EH H +
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 78
Query: 242 PFVCNM 247
F M
Sbjct: 79 NFKLTM 84
Score = 28.6 bits (63), Expect = 1.7
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 268 MENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRN-HTGEKK---YICEVCGKGFVQ 323
+H + N GY+C C D H+ + H Y+C C +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 324 WSSHYYH-MFTHSESRNFQCTV 344
+ + H + H NF+ T+
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 26.7 bits (58), Expect = 8.9
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 325 SSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVH---ELLK 381
H+++ ++C C F TP + H S H L
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCT--FQTP------------DLNMFTFHVDSEHPNVVLNS 49
Query: 382 PYECDTCGHGLSSKKSLDDH-YRIHTGEKKYVCQ 414
Y C C +L +H + H GE+ +
Sbjct: 50 SYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.9 bits (78), Expect = 0.007
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEK 157
++H C + CGK + ++++ H+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.8 bits (70), Expect = 0.066
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 434 SETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKR 465
+ + +C CGK Y +HLR+HL HT +R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.9 bits (65), Expect = 0.34
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 462 TKKRLYVC--ETCGKEFMKLELLKSHLTTH 489
KK+ ++C + CGK + K L++HL H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 28.9 bits (65), Expect = 0.34
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 532 EKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 563
K + C + C + + +L+ H+R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.9 bits (65), Expect = 0.34
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEK 310
+ C+I CG+V ++L+ H+R HTGE+
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.1 bits (76), Expect = 0.010
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
R F C+VC RAF +LK H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 32.7 bits (75), Expect = 0.012
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
R C VC +AFA ++K H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 32.3 bits (74), Expect = 0.017
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTH 517
R F+CE C+ F ++HL +H+R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 29.2 bits (66), Expect = 0.26
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
+ + C+ C + ++ L HYR HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.40
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
+ C +C R + +LK H R+HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (63), Expect = 0.61
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 440 VCSYCGKTYKNPNHLRSHLNTHTKKR 465
VC C + + HL+ H +HT ++
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.7 bits (62), Expect = 0.69
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVH 265
R FVC +C F ++HL++HY+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 27.7 bits (62), Expect = 0.77
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 465 RLYVCETCGKEFMKLELLKSHLTTH 489
R +VCE C + F + E LK H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 35.3 bits (80), Expect = 0.012
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 373 QRSVHELLKPYECDTCGHGLSSKKSLDDHY--RIHTGEKKYVCQQCG---ASFTQWASLF 427
R + +C C L S+ HY R H + + + +
Sbjct: 23 IRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA 82
Query: 428 YHKFSHSETRNQVCSYCGKTYKNPNHLRSHLN--THTKK 464
+ S E R++ C C T+ +P SH TH K
Sbjct: 83 PAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
Score = 27.6 bits (60), Expect = 6.1
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 285 QCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFV-----QWSSHYYHMFTHSESRN 339
QC +C V+ + H ++ K + + + E R+
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRS 93
Query: 340 FQCTVCDKKFATPAGLREH 358
C VC+ F++P H
Sbjct: 94 KCCPVCNMTFSSPVVAESH 112
Score = 27.2 bits (59), Expect = 7.2
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 184 TQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVH------ 237
+ C C + +H ++ H + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRK--HANKVRRYMAINQGEDSVPAKKFKAAPAEISD 88
Query: 238 TTDRPFVCNMCPSTFKLKKHLRQHY--KVHLKM 268
DR C +C TF HY K H+K
Sbjct: 89 GEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.9 bits (74), Expect = 0.014
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KPY+C C + + K +L+ H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.0 bits (69), Expect = 0.066
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 280 TGPGYQCNICGRVMNDRTNLKVHMRNHTGEK 310
+G Y+C C + NL VH+R HTGEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.6 bits (63), Expect = 0.44
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEK 157
+ ++C C A A N+ VH+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.1 bits (59), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ ++C C A NL +H+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.031
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 8/41 (19%)
Query: 126 ENVREHQ-CSVCGKAFADITNMKVHMRIHTGEKKYVCETCG 165
N+ C C I R G+ VC CG
Sbjct: 16 PNLNIVLTCPECKVYPPKIVE-----RFSEGD--VVCALCG 49
Score = 31.6 bits (71), Expect = 0.46
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 12/55 (21%)
Query: 286 CNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNF 340
C C + R G+ +C +C G V S T SE R F
Sbjct: 24 CPECK---VYPPKIVE--RFSEGD--VVCALC--GLVL-SDKLVD--TRSEWRTF 66
Score = 31.6 bits (71), Expect = 0.55
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 19/58 (32%)
Query: 58 GKKNAIHVNNINKKVSYKCPDC----SVIVVSY-SGFKSHLDIHNVEKEYFCHICKKV 110
K+ N+N + CP+C IV + G + C +C V
Sbjct: 8 DKRAGRRGPNLNIVL--TCPECKVYPPKIVERFSEG------------DVVCALCGLV 51
Score = 30.8 bits (69), Expect = 0.82
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 385 CDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCG 417
C C K ++ G+ VC CG
Sbjct: 24 CPECKV--YPPKIVERFSE---GD--VVCALCG 49
Score = 29.6 bits (66), Expect = 2.1
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCG 445
C +C + +FS + VC+ CG
Sbjct: 19 NIVLTCPECKVYPPK----IVERFSEGDV---VCALCG 49
Score = 29.2 bits (65), Expect = 2.9
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCG 37
C EC ++ + ++ VC CG
Sbjct: 24 CPECKVYPPKIVERFSEGDV--------VCALCG 49
Score = 27.7 bits (61), Expect = 8.5
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 7/35 (20%)
Query: 439 QVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCG 473
C C P + + VC CG
Sbjct: 22 LTCPECKV--YPPKIVERF-----SEGDVVCALCG 49
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 35.9 bits (82), Expect = 0.039
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 182 TNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKS 215
+ +VC+ C + AL+ H+R+ H +
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHRDDAST 146
Score = 32.5 bits (73), Expect = 0.43
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 467 YVCETCGKEFMKLELLKSHL-TTH 489
YVC C F + L HL + H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.7 bits (71), Expect = 0.77
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 127 NVREHQCSVCGKAFADITNMKVHMR 151
N + C+VC F+ ++ + H+R
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLR 137
Score = 31.3 bits (70), Expect = 1.0
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 337 SRNFQCTVCDKKFATPAGLREHKRV-HVTNRKNMI---DHQRSVHELLKPYECDTCGHGL 392
++ C VC+ +F+T + L EH R H + ++ ++ L ++
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLTAWDDIRILSPD 173
Query: 393 SSKKSLDDH 401
S KSL +
Sbjct: 174 VSSKSLSAY 182
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 31.3 bits (70), Expect = 0.041
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTG 407
++PY C CG S K ++ HYR+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.6 bits (63), Expect = 0.43
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 128 VREHQCSVCGKAFADITNMKVHMRIHTG 155
+R + CSVCGK F+ M+ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 1.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 241 RPFVCNMCPSTFKLKKHLRQHYKVH 265
RP+ C++C F LK + HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 26.3 bits (57), Expect = 2.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHT 238
C VCGK F +K Q++ H VHT
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHT 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.0 bits (71), Expect = 0.053
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 563
R F C C + F L+ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.068
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 129 REHQCSV--CGKAFADITNMKVHMRIHTGEK 157
R C+ CGK F ++ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.9 bits (68), Expect = 0.15
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 381 KPYECD--TCGHGLSSKKSLDDHYRIHTGEK 409
+P+ C CG + L H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.6 bits (62), Expect = 1.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 493 RPFIC--EFCSAGFKTKKHLSQHHRTH 517
RPF+C +C F L +H RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 25.6 bits (57), Expect = 3.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEK 310
+ C CG+ L+ H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 35.4 bits (81), Expect = 0.058
Identities = 33/267 (12%), Positives = 63/267 (23%), Gaps = 31/267 (11%)
Query: 108 KKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGAS 167
K V H + CS C G++ + C+ C
Sbjct: 30 KNVHEVK----NHKFTARFFKQPTFCSHCTDFIWGF-----------GKQGFQCQVC--- 71
Query: 168 FALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHTIHQKSICDVCGKEFR-M 226
S VH H F C + + H HT + CD CG +
Sbjct: 72 -----SFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGL 126
Query: 227 KRQLKE----HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMENHLNRHTNIHTGP 282
Q + M VH V ++C + R + ++ +
Sbjct: 127 IHQGMKCDTCMMNVHKRCVMNVPSLCGTDH---TERRGRIYIQAHIDREVLIVVVRDAKN 183
Query: 283 GYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQWSSHYYHMFTHSESRNFQC 342
+ G + ++K + + + + R
Sbjct: 184 LVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSV 243
Query: 343 TVCDKKFATPAGLREHKRVHVTNRKNM 369
+ D + ++ +
Sbjct: 244 EIWDWDLTSRNDFMGSLSFGISELQKA 270
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.0 bits (74), Expect = 0.058
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 181 HTNTQFVCSYCGN-TYKNPKALTSHIRNSHTIHQKSICDVCGKEFRMKRQLKEH-MAVHT 238
H + VC C T K L H+ + C C K+F+ K L H MA H+
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 239 TD 240
Sbjct: 80 AK 81
Score = 32.6 bits (73), Expect = 0.069
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 66 NNINKKVSYKCPDCSVIVV-SYSGFKSHLDIHNVEKEYF-CHICKKVFLRNRNLVCHIKA 123
I+++ CP C+V+ + G K H+++ ++ C C+K F L H A
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 124 VHEN 127
H
Sbjct: 77 EHSA 80
Score = 31.1 bits (69), Expect = 0.26
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 YACEECGK-SFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMK 51
C C + KT + L H E+ + + C C + +K+K LN H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 27.2 bits (59), Expect = 5.5
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 100 KEYFCHICKKVFLRN-RNLVCHIKAVHENVREHQCSVCGKAFADITNMKVHMR 151
E C C V + L H++ + +C C K F + H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 26.8 bits (58), Expect = 7.8
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 310 KKYICEVCGKGFVQWSSHY-YHMFT-HSESRNFQCTVCDKKFATPAGLREHKRVHVTNRK 367
+ +C C + HM +C C K+F + AGL H + +
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.8 bits (58), Expect = 8.2
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 284 YQCNICGRVMNDR-TNLKVHMRN-HTGEKKYICEVCGKGFVQWSSHYYHMFTHSESR 338
C C V LK HM + C+ C K F + YH ++
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 26.4 bits (57), Expect = 9.1
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 440 VCSYCGK-TYKNPNHLRSHLNT-HTKKRLYVCETCGKEFMKLELLKSHLTTHLAARP 494
VC C T K L+ H+ + C+ C K+F L H +A+P
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.5 bits (68), Expect = 0.074
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGEK 157
QC +CGKAF +++ H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.2 bits (62), Expect = 0.62
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 285 QCNICGRVMNDRTNLKVHMRNHTGEK 310
QC +CG+ ++L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.8 bits (61), Expect = 0.67
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
KP +C CG + SL H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 2.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 538 QCKVCDRAFFDVYNLKLHMRIHTGEK 563
QC +C +AF +L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 34.7 bits (77), Expect = 0.080
Identities = 33/282 (11%), Positives = 62/282 (21%), Gaps = 19/282 (6%)
Query: 151 RIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 210
IH + C C + ++ C C K
Sbjct: 21 DIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVR-- 78
Query: 211 IHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMEN 270
+ + VH C C S ++ K ++
Sbjct: 79 -CHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKS 137
Query: 271 HLNRHTNIHT-GPGYQCNICGRVMNDRTNLKVHMRNHTGEK--------KYICEVCGKGF 321
H + C C + M + M+ Y C C
Sbjct: 138 CGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHTKL 197
Query: 322 VQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELL- 380
+ + + C C + + + H + + ++ SV E
Sbjct: 198 FAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYF 257
Query: 381 ------KPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQC 416
++C C + + + EK C C
Sbjct: 258 DHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVC 299
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.7 bits (68), Expect = 0.11
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ ++P+ C +C FK K + H + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 28.3 bits (62), Expect = 0.70
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 489 HLAARPFICEFCSAGFKTKKHLSQHHRTHKR 519
+P+ C C FK K +S H R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.8 bits (58), Expect = 2.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTG 407
KPY C CG K + H R H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.4 bits (57), Expect = 3.2
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 334 HSESRNFQCTVCDKKFATPAGLREHKRVH 362
S + + C VC +F + H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.4 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 125 HENVREHQCSVCGKAFADITNMKVHMRIHTG 155
+ + C VCG F M H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.3 bits (54), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 306 HTGEKKYICEVCGKGFVQWSSHYYHMFTHSES 337
+GEK Y C VCG F + YH+ +H S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.16
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 235 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 267
+ ++ F CN C TF K+L QH ++H +
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 28.6 bits (63), Expect = 0.66
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 487 TTHLAARPFICEFCSAGFKTKKHLSQHHRTHKR 519
++ + F C C F K+L+QH R H R
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 26.7 bits (58), Expect = 2.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHT 406
K ++C+ C S K L H RIHT
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 26.7 bits (58), Expect = 3.2
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHS 54
+ ++ C+ C +T+ L QH +IH+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 26.3 bits (57), Expect = 4.1
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 333 THSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKN 368
+ + + F+C C+K F+ L +H+R+H K+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.4 bits (70), Expect = 0.20
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 68 INKKVSYKCPDCSVIVVSY-SGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVH 125
I K S CP C + G K H++ E + CH C K + H+ A H
Sbjct: 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
Score = 28.3 bits (62), Expect = 2.2
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 157 KKYVCETCGA-SFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTSHIRNSHT 210
C TC A L H + F C +CG ++ + H+ +H
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 27.1 bits (59), Expect = 6.0
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 440 VCSYCGK-TYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICE 498
C C K L+ H+ K+ ++ C CGK+ L +K H+ + + P
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS 94
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.24
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 406 TGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQ 439
+ EK + C++CG F Q+ SL H+ H +N
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNS 41
Score = 28.2 bits (62), Expect = 0.71
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 129 REHQCSVCGKAFADITNMKVHMRIHTGEKK 158
+ HQC CG+ F ++ H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 27.9 bits (61), Expect = 1.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHTGEKK 410
K ++C CG SL +H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 27.1 bits (59), Expect = 2.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 307 TGEKKYICEVCGKGFVQWSSHYYHMFTHSESRN 339
+ EK + C CG+ F Q+ S H H +N
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 25.9 bits (56), Expect = 4.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 564
+ QC+ C FF +L H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 25.9 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 2 YACEECGKSFKTKIQLCAHKELVHEGKQRS 31
+ C ECG+ F + L H +++H G++ S
Sbjct: 13 HQCRECGEIFFQYVSLIEH-QVLHMGQKNS 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.25
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 373 QRSVHEL---LKPYECDTCGHGLSSKKSLD 399
++++ +L LK Y D+ L+ K +++
Sbjct: 19 KQALKKLQASLKLYADDS-APALAIKATME 47
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.4 bits (66), Expect = 0.25
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 465 RLYVC--ETCGKEFMKLELLKSHLTTHLAAR 493
+ + C C K F + ++SH+ THL R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.4 bits (66), Expect = 0.32
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 435 ETRNQVCSY--CGKTYKNPNHLRSHLNTHTKKR 465
+ C + C KT+K ++RSH+ TH + R
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.9 bits (62), Expect = 1.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 136 CGKAFADITNMKVHMRIHTGEK 157
C K F N++ H++ H ++
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.5 bits (61), Expect = 1.4
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 535 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 563
+ F+C C + F YN++ H++ H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.4 bits (58), Expect = 3.6
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 284 YQCNI--CGRVMNDRTNLKVHMRNHTGEK 310
++C C + R N++ H++ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 8.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 220 CGKEFRMKRQLKEHMAVHTTDR 241
C K F+ + ++ H+ H DR
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.9 bits (65), Expect = 0.31
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 337 SRNFQCTVCDKKFATPAGLREHKRVHVTNR 366
R++ C+ C ++F + L H VH +R
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 28.2 bits (63), Expect = 0.72
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLE 524
R + C FC F++ + L H H+R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 36
Score = 27.8 bits (62), Expect = 1.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 441 CSYCGKTYKNPNHLRSHLNTHTKKR 465
CS+C + +++ L H+N H + R
Sbjct: 9 CSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.1 bits (55), Expect = 8.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 535 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKYLSM 568
R + C C R F L HM +H ++ L +
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL 38
Score = 25.1 bits (55), Expect = 8.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 33 CDTCGRTYKTKHSLNQHMKIHSDVRGK 59
C C R +++ +L HM +H R +
Sbjct: 9 CSFCKREFRSAQALGGHMNVHRRDRAR 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.0 bits (64), Expect = 0.35
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 237 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ RPFVC +C S F K + +H KVH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 26.6 bits (58), Expect = 2.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 489 HLAARPFICEFCSAGFKTKKHLSQHHRTH 517
RPF+C C + F TK + ++H + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 26.3 bits (57), Expect = 2.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 405 HTGEKKYVCQQCGASFTQWASLFYHKFSHSETRN 438
+G++ +VC+ C ++FT A+ H H++T +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS 35
Score = 25.5 bits (55), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 25 HEGKQRSVCDTCGRTYKTKHSLNQHMKIHSD 55
GK+ VC C + TK + +H+K+H+D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 25.5 bits (55), Expect = 6.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 334 HSESRNFQCTVCDKKFATPAGLREHKRVH 362
S R F C +C F T A H +VH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.5 bits (55), Expect = 6.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 531 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 560
R F C++C AF N H+++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.1 bits (54), Expect = 6.9
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 381 KPYECDTCGHGLSSKKSLDDHYRIHT 406
+P+ C C ++K + H ++HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.1 bits (54), Expect = 9.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 125 HENVREHQCSVCGKAFADITNMKVHMRIHT 154
R C +C AF N H+++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.1 bits (54), Expect = 9.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 153 HTGEKKYVCETCGASFALWGSLNVHSYSHTNT 184
+G++ +VC C ++F + H HT+T
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.37
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 207 NSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTD 240
+S + + +CD+CGK+F+ K LK H +HT D
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.6 bits (55), Expect = 6.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 28 KQRSVCDTCGRTYKTKHSLNQHMKIHSD 55
+ +CD CG+ +K+K +L H +H+
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.81
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 4 CEECGKSFKTKIQLCAHKELVHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGK 59
E+ K + Q H+ L G++R + + L + + +GK
Sbjct: 183 SEDYMKRLHSMSQETIHRNL-ARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
Score = 30.6 bits (68), Expect = 1.3
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 2/59 (3%)
Query: 378 ELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYH-KFSHSE 435
L Y + L S H + GEK+ ++ L S
Sbjct: 177 WLRVWY-SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 30.6 bits (68), Expect = 1.4
Identities = 5/49 (10%), Positives = 11/49 (22%)
Query: 217 CDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 265
+ K Q H + ++ + LR +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 30.2 bits (67), Expect = 1.5
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 403 RIHTGEKKYV--CQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNT 460
I GE V + + H+ + + NP LR ++
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Query: 461 HTKKR 465
++
Sbjct: 231 SVLRQ 235
Score = 29.4 bits (65), Expect = 2.5
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 330 HMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNR 366
H + Q ++ P LR + V +
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.0 bits (64), Expect = 3.6
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 451 PNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHL 486
+ H N ++ E + E L+ +
Sbjct: 193 MSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 31.6 bits (72), Expect = 0.81
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 119 CHIKAVH----ENVREHQCSVCGKAFADITNMKVHMRIHTGE-KKYVCETCGASFALWGS 173
CH K + E QC C +A++ N K+ H C +C
Sbjct: 18 CHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSC--------- 68
Query: 174 LNVHSYSHTNTQFVCSYCGNTYKNPKALTS 203
H H +F C+ C + P +
Sbjct: 69 ---HK-GHEEPKFYCNECHSFDIKPMPFSD 94
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 30.9 bits (69), Expect = 0.99
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 24/124 (19%)
Query: 355 LREHKRVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQ 414
L +V ++ ++ V + C CG + TG + C
Sbjct: 156 LGAALQVAWSHWLLGLEEGAVVETESRTL-CPACGS--PPMAGMIRQGGKETGLRYLSCS 212
Query: 415 QCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRS-----HLNTHTKKRLYVC 469
C +W R + CS+C ++ S R C
Sbjct: 213 LCA---CEW----------HYVRIK-CSHCEES--KHLAYLSLEHDGQPAEKAVLRAETC 256
Query: 470 ETCG 473
+C
Sbjct: 257 PSCQ 260
Score = 28.6 bits (63), Expect = 5.8
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 21/119 (17%)
Query: 122 KAVHENVREHQCSVCGKAFADITNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSH 181
AV E C CG + ++ + TG + C C + +
Sbjct: 174 GAVVETESRTLCPACG-SPPMAGMIRQGGK-ETGLRYLSCSLCA-----------CEWHY 220
Query: 182 TNTQFVCSYCGNTYKNPKALTS----HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAV 236
+ CS+C + A S + + C C + + A
Sbjct: 221 VRIK--CSHCEES--KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHAD 275
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 1.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 207 NSHTIHQKSICDVCGKEFRMKRQLKEHMAVHT 238
+S S C CGK FR L EH A+H
Sbjct: 5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHA 36
Score = 26.0 bits (56), Expect = 4.1
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 382 PYECDTCGHGLSSKKSLDDHYRIHTGE 408
EC CG L +H +H GE
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 25.6 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 132 QCSVCGKAFADITNMKVHMRIHTGE 156
+C CGK F + + H +H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
Score = 25.6 bits (55), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 4 CEECGKSFKTKIQLCAHKELVHEGK 28
C+ECGK F+ L H+ +H G+
Sbjct: 15 CQECGKIFRHSSLLIEHQA-LHAGE 38
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 280 TGPGYQCNICGRVMNDRTNLKVHMRNHTGEK 310
+G ++C++C ++NLK HM H+ EK
Sbjct: 6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 1.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 534 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 563
+ F C+ C++ F ++L+ H+RIHT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 432 SHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKR 465
S S + C YC K +K + L++HL HT ++
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 133 CSVCGKAFADITNMKVHMRIHTGEK 157
C C K F +++ H+RIHT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 4.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 284 YQCNICGRVMNDRTNLKVHMRNHTGEK 310
+ C C +V + +L+ H+R HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.2 bits (54), Expect = 7.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 380 LKPYECDTCGHGLSSKKSLDDHYRIHTGEK 409
K + C+ C K SL H RIHT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 27.9 bits (62), Expect = 1.3
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 146 MKVHMRIHTGEKKYVCETCGASFALWGSLNV-HSYSHTNTQFVCSYCG 192
++ R T + C C ++F L + F C++C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFT---DLEANQLFDPMTGTFRCTFCH 46
Score = 27.5 bits (61), Expect = 2.1
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 454 LRSHLNTHTKKRLYVCETCGKEFMKLELLK--SHLTTHLAARPFICEFCSA 502
+ + T + + C C F LE + +T F C FC
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGT-----FRCTFCHT 47
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 30.2 bits (67), Expect = 1.4
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 400 DHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLN 459
D YR G K +C C F + ++ R C + KN + ++
Sbjct: 65 DIYRTGKGYDKKICNICHILKNT--DGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSST 122
Query: 460 T--------HTKKRLYVCETCGKEFMKL---ELLKSHLTTHLAARPFICEFCSAG 503
K ++ C C K + L+ H R +IC+ C+ G
Sbjct: 123 EKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTG 177
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 30.6 bits (69), Expect = 1.9
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 17/104 (16%)
Query: 304 RNHTGEKKYICEVCGKGFVQWSSHY---------YH--MFTHSESR-NFQCTVCDKKFAT 351
R E C CG H+ H H C C + +
Sbjct: 48 RLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKIS 107
Query: 352 PAGLREHKRVHVTNRKNMID-----HQRSVHELLKPYECDTCGH 390
+ ++ R++ +K + +K C CG
Sbjct: 108 EDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGE 151
Score = 29.0 bits (65), Expect = 5.1
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 24/135 (17%)
Query: 30 RSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSY---KCPDCSVIVVSY 86
C TCG T H+++ V IHV + + C C
Sbjct: 55 GQKCPTCGNTLGNCPGHFGHIELVRPV------IHVGFVKHVYEFLKATCRRC------- 101
Query: 87 SGFKSHLDIHNVEKEYFCHI---CKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADI 143
+ I E E + I KK + + ++ C CG+ I
Sbjct: 102 ----GRVKISEDEIEKYSRIYNAIKKRWPSAARRLTE-YVKKTAMKAQVCPHCGEKQFKI 156
Query: 144 TNMKVHMRIHTGEKK 158
K + ++
Sbjct: 157 KLEKPYNFYEERKEG 171
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 239 TDRPFVCNMCPSTFKLKKHLRQHYKVH 265
T + + C+ C +TF L+KHL QH K H
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTH 35
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 29.7 bits (66), Expect = 2.0
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 240 DRPFVCNMCPSTF-----KLKKHLRQHYKVHLK 267
C C TF KLK HL++ Y L
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLD 199
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 28.0 bits (62), Expect = 2.1
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 454 LRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLAARPFICEFCSAGFKTKKHLSQH 513
H T RL VC+ C E L+ LK H + AR +C C K L H
Sbjct: 5 SSGHEETECPLRLAVCQHCDLELSILK-LKEHE-DYCGARTELCGNCGR-NVLVKDLKTH 61
Query: 514 HRTHKRK 520
R+
Sbjct: 62 PEVCGRE 68
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.1 bits (59), Expect = 2.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 186 FVCSYCGNTYKNPKALTSHIRNSH 209
+ C CG YKN L+ H +SH
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSH 31
Score = 25.5 bits (55), Expect = 8.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 493 RPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMK 528
+P+ C+ C +K + LS +H H E K
Sbjct: 6 KPYACDICGKRYKNRPGLS-YHYAHSHLAEEEGEDK 40
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 29.6 bits (67), Expect = 3.0
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 386 DTCGHGLSSKKSLDDHYRIHT 406
D GHG SS + Y T
Sbjct: 60 DLFGHGRSSHLEMVTSYSSLT 80
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 29.7 bits (66), Expect = 4.0
Identities = 24/145 (16%), Positives = 32/145 (22%), Gaps = 18/145 (12%)
Query: 437 RNQVCSYCGKTYKN-PNH-----LRS-----HLNTHTKKRL-YVCETCGKEFMKLELLKS 484
RN C C + P H L KK VC CGK +
Sbjct: 63 RNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM 122
Query: 485 HLTTHLAARPFICEFCSAGFKTKKHLSQHHRTHKRKDTLENHMK--AVHEKIRDFQCKVC 542
+ KTK + L + IR K+
Sbjct: 123 RQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKL- 181
Query: 543 DRAFFDVYNLKLHMRIHTGEKKYLS 567
+ E + LS
Sbjct: 182 ---VGSWKKDRATGDADEPELRVLS 203
Score = 28.5 bits (63), Expect = 7.8
Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 309 EKKYICEVCGK---------GFVQWSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHK 359
++ C+ C + G + + +H+ ++ + VC
Sbjct: 62 DRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNEL 121
Query: 360 RVHVTNRKNMIDHQRSVHELLKPYECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGA 418
K+ ++ L K C D + CG
Sbjct: 122 MRQALAIKDSKKRFAAIWTLCKT--KMVCET---------DVPSEDDPTQLVSRGGCGN 169
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 29.3 bits (63), Expect = 4.1
Identities = 41/440 (9%), Positives = 91/440 (20%), Gaps = 27/440 (6%)
Query: 24 VHEGKQRSVCDTCGRTYKTKHSLNQHMKIHSDVRGKKNAIHVNNINKKVSYKCPDCSVIV 83
+H+G V + + + + + C C
Sbjct: 310 IHKGTYAMVGYSGTAYDFSGTMAKAAAESGYPQYREGKDVSERVTLPVSIGNCQSCHSTD 369
Query: 84 VSYSGFKSHLDIHNVEKEYFCHICKKVFLRNRNLVCHIKAVHENVREHQCSVCGKAFADI 143
+ H CH+ F N + R +
Sbjct: 370 DKGPVDAASFKHHKGLACASCHM--SGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATPE 427
Query: 144 TNMKVHMRIHTGEKKYVCETCGASFALWGSLNVHSYSHTNTQFVCSYCGNTYKNPKALTS 203
+ + + + C +C A GS H T+ + + +N +
Sbjct: 428 IDGIPGVNLVHVFQNGGCASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKLENGTFDVA 487
Query: 204 HIRNSHTIHQKSICDVCGKEFRMKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 263
+ T+ ++ ++K A + T+ T ++
Sbjct: 488 KGELTFTV-NWHSDVAPHQDPKVKEFWVSLTAFNGTEYTMGPRPSNGTLGRSENRISVNL 546
Query: 264 VHLKMENHLNRHTNIHTGPGYQCNICGRVMNDRTNLKVHMRNHTGEKKYICEVCGKGFVQ 323
++ +L N I + K + G +C
Sbjct: 547 AKVETNANLTAVPNGSKVTYTLTGIKAVIGTSSVPYKQIVSIGKGFMDGKLLIC------ 600
Query: 324 WSSHYYHMFTHSESRNFQCTVCDKKFATPAGLREHKRVHVTNRKNMIDHQRSVHELLKPY 383
+ C+ + ++
Sbjct: 601 ---ANSAELDPTMDAAIDCSNTEAPIYEVIVGSNKASFSADASNVTARSI-----VISEA 652
Query: 384 ECDTCGHGLSSKKSLDDHYRIHTGEKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSY 443
+C C HG + S + C C ++ + + C
Sbjct: 653 KCANC-HGEKADFSASHALTHAADKPDNSCGTCHSA---------VPNTAVALADGSCVA 702
Query: 444 CGKTYKNPNHLRSHLNTHTK 463
C + K
Sbjct: 703 CHNGAPAHSKKPFERGFDFK 722
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.1 bits (64), Expect = 4.7
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 434 SETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLYVCETCGKEFMKLELLKSHLTTHLA 491
SE + C +C + +K + SHL K+ E+ + F+ E +L
Sbjct: 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKN---ESKRRNFVYSEYKLHRYLKYLN 342
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 10/44 (22%)
Query: 186 FVCSYCGNTYKNPKALTSHIR-NSHTIHQKSICDVCGKEFRMKR 228
+C N + +C VCG R
Sbjct: 127 RICKNNPNHP--------NNIFIDAIKPNGDVCRVCGGAL-SAR 161
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.7 bits (61), Expect = 7.6
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 408 EKKYVCQQCGASFTQWASLFYHKFSHSETRNQVCSYCGKTYKNPNHLRSHLNTHTKKRLY 467
C G +H E C C + ++ H+ H+ +R
Sbjct: 80 SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQK-FHINIHILKDCPRRQV 138
Query: 468 VCETCGKEFMKLEL 481
C+ C +
Sbjct: 139 SCDNCAASMAFEDK 152
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase,
zymogen, pantothenate biosynthesis, pyruvate; 2.99A
{Mycobacterium tuberculosis}
Length = 139
Score = 27.5 bits (61), Expect = 7.7
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 342 CTVCDKKFATPAGLREHKRVHVTNRKN 368
T+ D A L E ++V + + N
Sbjct: 26 VTI-DADLMDAADLLEGEQVTIVDIDN 51
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 27.8 bits (62), Expect = 9.7
Identities = 9/39 (23%), Positives = 11/39 (28%), Gaps = 11/39 (28%)
Query: 129 REHQ-CSVCGKAFADITNMKVHMRIHTGEKKYVCETCGA 166
R H+ C CG M E +C C
Sbjct: 105 RSHKYCGYCGHE----------MYPSKTEWAMLCSHCRE 133
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 9.7
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 340 FQCTVCDKKFATPAGLREHKRVHVTNRKN 368
F C C K+F L +H +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEE 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.133 0.434
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,770,289
Number of extensions: 506914
Number of successful extensions: 7146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5466
Number of HSP's successfully gapped: 2257
Length of query: 585
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 486
Effective length of database: 3,937,614
Effective search space: 1913680404
Effective search space used: 1913680404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.5 bits)