BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy630
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RJK8|ACBD6_RAT Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus
GN=Acbd6 PE=2 SV=1
Length = 282
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 46/255 (18%)
Query: 93 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 152
++ + F +A ++ LV+ LL YA YKQ VG CNI KP++++ E K K+ AW
Sbjct: 41 SLAELFEKAAAHVQGLVQVASREQLLYLYARYKQVKVGNCNIPKPNFFDFEGKQKWEAWK 100
Query: 153 SLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWED 212
+LG + S+AM +YIA +K++D GW
Sbjct: 101 ALGDSSPSQAMQEYIAAVKKLDPGW----------------------------------- 125
Query: 213 KEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVK 272
N S++ G + + G G VSS+ ++E+ + + +KNI+++ +E +D + K
Sbjct: 126 ------NPQVSEKKGKEGSSG--FGGPVVSSLYHEET-IREEDKNIFDYCRENNIDHITK 176
Query: 273 QLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332
+ K K ++N DE G LHWACDRGH ++V+ L++ C A +N D++G L YA A
Sbjct: 177 AI-KSKTVDVNMTDEEGRALLHWACDRGHKELVKVLLQ-CEAGINCQDNEGQTALHYAAA 234
Query: 333 IEHTDLIEYLVNSGS 347
E +D++E L+ SG+
Sbjct: 235 CEFSDIVELLLQSGA 249
>sp|Q9BR61|ACBD6_HUMAN Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens
GN=ACBD6 PE=1 SV=1
Length = 282
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 46/254 (18%)
Query: 94 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 153
+ + F +A +L L++ LL YA YKQ VG CN KPS+++ E K K+ AW +
Sbjct: 42 LAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKA 101
Query: 154 LGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDK 213
LG + S+AM +YIA++K++D GW
Sbjct: 102 LGDSSPSQAMQEYIAVVKKLDPGW------------------------------------ 125
Query: 214 EQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQ 273
N ++ G + N G G +SS+ ++E+ + + +KNI+++ +E +D + K
Sbjct: 126 -----NPQIPEKKGKEANTG--FGGPVISSLYHEET-IREEDKNIFDYCRENNIDHITKA 177
Query: 274 LTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 333
+ K K+ ++N DE G LHWACDRGH ++V L++ AD+N D++G L YA A
Sbjct: 178 I-KSKNVDVNVKDEEGRALLHWACDRGHKELVTVLLQH-RADINCQDNEGQTALHYASAC 235
Query: 334 EHTDLIEYLVNSGS 347
E D++E L+ SG+
Sbjct: 236 EFLDIVELLLQSGA 249
>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6
PE=2 SV=1
Length = 282
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 132/257 (51%), Gaps = 46/257 (17%)
Query: 91 AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
+ ++ + F +A ++L LV+ LL YA YKQ VG CN KPS+++ E K K+ A
Sbjct: 39 SRSLPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEA 98
Query: 151 WNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASW 210
W +LG + S+AM +YIA++K++D W
Sbjct: 99 WKALGDSSPSQAMQEYIAVVKKLDPSW--------------------------------- 125
Query: 211 EDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDML 270
N ++ G + N G G VSS+ ++E + + +K+I+++ +E +D +
Sbjct: 126 --------NPQSPEKKGKEANTG--FGGPVVSSLYHEEI-IREEDKDIFDYCRENNIDHI 174
Query: 271 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330
K + K K+ ++N DE G LHWACDRGH ++V L++ AD+N D++G L YA
Sbjct: 175 TK-VIKTKNMDVNMKDEEGRTLLHWACDRGHKELVTVLLQY-RADINCQDNEGQTALHYA 232
Query: 331 KAIEHTDLIEYLVNSGS 347
A E D++E L+ SG+
Sbjct: 233 AACEFLDIVELLLQSGA 249
>sp|Q9D061|ACBD6_MOUSE Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus
GN=Acbd6 PE=1 SV=2
Length = 282
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 48/256 (18%)
Query: 93 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 152
++ + F +A ++ LV+ LL YA +KQ VG CN KP++++ E K K+ AW
Sbjct: 41 SLAELFEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWK 100
Query: 153 SLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWED 212
+LG + S+AM +YIA +K++D GW
Sbjct: 101 ALGDSSPSQAMQEYIAAVKKLDPGW----------------------------------- 125
Query: 213 KEQEEINWDESQESGSKENEGQTK-GWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLV 271
Q S K EG + G VSS+ ++E+ + + +KNI+++ +E +D +
Sbjct: 126 ---------NPQVSEKKGKEGSSGFGGPVVSSLYHEET-IREEDKNIFDYCRENNIDHIA 175
Query: 272 KQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331
K + K K ++N DE G LHWACDRGH ++V+ L++ A +N D++G L YA
Sbjct: 176 KAI-KSKAADVNMTDEEGRALLHWACDRGHKELVKVLLQY-EAGINCQDNEGQTALHYAA 233
Query: 332 AIEHTDLIEYLVNSGS 347
A E D++E L+ SG+
Sbjct: 234 ACEFLDIVELLLQSGA 249
>sp|Q4V8X4|ACBD6_DANRE Acyl-CoA-binding domain-containing protein 6 OS=Danio rerio
GN=acbd6 PE=2 SV=1
Length = 300
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 127/264 (48%), Gaps = 47/264 (17%)
Query: 85 DSHNRM-AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNME 143
D+ R+ ++E+ F A D + LV+ LL YA +KQ VG+CN KP +++ E
Sbjct: 50 DASARLEGADLENEFESAADRVRDLVQTASREQLLYLYARFKQVKVGKCNTSKPGFFDFE 109
Query: 144 AKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALL 203
+ K++AW LG M+ +AM +Y+ + +D
Sbjct: 110 GQRKWSAWKQLGDMSAEQAMQEYVTCVHALDP---------------------------- 141
Query: 204 NEVDASWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAK 263
E + S+ G ++ G G VSS+ +E ++ + +KNI+++ +
Sbjct: 142 -------------EGSQKSSERRGGEKRTG--FGGPAVSSLYQEE-KIREEDKNIFDYCR 185
Query: 264 EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 323
E ++ + K ++ K ++N DE G LHWACDRGH +V L++ AD+N D +G
Sbjct: 186 ENNIEHVSKAISS-KTVDVNTRDEEGRALLHWACDRGHKDLVSLLLQN-NADINSQDDEG 243
Query: 324 DYGLDYAKAIEHTDLIEYLVNSGS 347
L YA A E +++E L+ +G+
Sbjct: 244 QTALHYASACEFAEIVELLLKAGA 267
>sp|Q66JD7|ACBD6_XENTR Acyl-CoA-binding domain-containing protein 6 OS=Xenopus tropicalis
GN=acbd6 PE=2 SV=1
Length = 286
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 45/259 (17%)
Query: 89 RMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKY 148
+ E ++ +F QA ++ ++ + LL YA YKQ VG+CN KP +++ E K K+
Sbjct: 27 KTEEELQGQFEQAAKHVQNVASVASTEQLLFLYARYKQVKVGRCNTPKPGFFDYEGKKKW 86
Query: 149 NAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDA 208
AW +LG + +AM++YI +K++D W + EE P+++ + +
Sbjct: 87 EAWKALGDYSCQQAMNEYIETVKKLDPDWSPQALEE------PHKEPKTTF--------- 131
Query: 209 SWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLD 268
G VS + + L + +K+I+++ +E +
Sbjct: 132 ----------------------------GGPVVSCLYKVQETLREEDKDIFDYCRENNIS 163
Query: 269 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 328
+ L+ ++N D+ G LHWACDRGH ++V L+ A +N+ DS+G L
Sbjct: 164 RVSHALST-GAIDVNVADDEGRCLLHWACDRGHTQLVSVLLFH-NAHINMQDSEGQTPLH 221
Query: 329 YAKAIEHTDLIEYLVNSGS 347
YA A E D+++ L++ G+
Sbjct: 222 YASACEFPDIVDLLLDHGA 240
>sp|Q4V869|ACBD6_XENLA Acyl-CoA-binding domain-containing protein 6 OS=Xenopus laevis
GN=acbd6 PE=2 SV=1
Length = 286
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 124/259 (47%), Gaps = 45/259 (17%)
Query: 89 RMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKY 148
+ E ++ +F QA ++ ++ + LL YA YKQ VG+CN KP +++ E K K+
Sbjct: 27 KTEEELQCQFEQAAKHVQNVASVASTEQLLYLYARYKQVKVGRCNTPKPGFFDYEGKKKW 86
Query: 149 NAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDA 208
AW +LG + +AM++YI +K++D DW P
Sbjct: 87 EAWKALGDYSHQQAMTEYIETVKKLDP------------DWSP----------------- 117
Query: 209 SWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLD 268
++ E KE + G V VS + + L + +K+I+++ +E
Sbjct: 118 -------------QALEEPYKEPKTTFGGPV-VSCLYKVQETLREEDKDIFDYCRENNHS 163
Query: 269 MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 328
+ L+ ++N D+ G + LHWACDRGH ++V +I A +N+ DS+G L
Sbjct: 164 RVSHALST-GSVDVNVADDEGRSLLHWACDRGHTQLVS-VILFHNAHINMQDSEGQTPLH 221
Query: 329 YAKAIEHTDLIEYLVNSGS 347
YA A E D+++ L++ G+
Sbjct: 222 YASACEFPDIVDLLLDHGA 240
>sp|Q9SM23|ACBP1_ARATH Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis
thaliana GN=ACBP1 PE=1 SV=2
Length = 338
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 110/243 (45%), Gaps = 58/243 (23%)
Query: 108 LVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 167
L +K+ + L+ Y LYK AT G C +PS M A++K+ AW LG M
Sbjct: 113 LSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAM---------- 162
Query: 168 ALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESG 227
P ++AM KYI L+ ++ +W E G
Sbjct: 163 -----------------------PPEEAMEKYIDLVTQLYPAW-------------VEGG 186
Query: 228 SKEN--EGQTKGWVN--VSSMINDESQLDDNE---KNIYEWAKEGKLDMLVKQLTKLKDF 280
SK G+ G + SS++ +E DNE I+ +A+EG+++ L+K +
Sbjct: 187 SKRRNRSGEAAGPMGPVFSSLVYEEE--SDNELKIDAIHAFAREGEVENLLKCIEN--GI 242
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 340
+N D G LHWA DRGHL V + L++K ADVN D++G L YA E L E
Sbjct: 243 PVNARDSEGRTPLHWAIDRGHLNVAEALVDK-NADVNAKDNEGQTSLHYAVVCEREALAE 301
Query: 341 YLV 343
+LV
Sbjct: 302 FLV 304
>sp|Q54GC8|ACBD6_DICDI Acyl-CoA-binding domain-containing protein 6 homolog
OS=Dictyostelium discoideum GN=acbd6 PE=3 SV=1
Length = 288
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 141/265 (53%), Gaps = 23/265 (8%)
Query: 94 MEDRFNQACDYLPSLVKKLDS---STLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
+E++F A DY+ + KL + L Y YKQAT+G CN P +Y+ KSK+N+
Sbjct: 6 IENKFKLAVDYITNNSGKLSNIKNEEQLYLYCNYKQATIGDCNTKAPPFYDYIGKSKWNS 65
Query: 151 WNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASW 210
WNSL + K AM+ YI+L+ + GW+ + E + S ++ +
Sbjct: 66 WNSLKGVEKIVAMNSYISLVNALSPGWDSNIKVE--------RATQSVFLNDEEFKELEK 117
Query: 211 EDKEQEEINWDESQESGSKENEGQTKGWVNVS----SMINDESQLDDNEKNIYE----WA 262
++KE++E +E+G + + ++K W+ S+++DE+ L+ EKN + W
Sbjct: 118 KEKEEKEELKKLEEENGGEIEKPKSK-WMGPVLSKFSLVDDET-LEKLEKNTKQDLGYWV 175
Query: 263 KEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD 322
++ + K++ K+ IN++DE+G L WACDRG+ ++ + LIE G++VNV D +
Sbjct: 176 SVNDIERVKKEIENDKNI-INEVDEDGRTALIWACDRGYFEIAKLLIEN-GSNVNVQDGE 233
Query: 323 GDYGLDYAKAIEHTDLIEYLVNSGS 347
G L YA + ++ + L++ S
Sbjct: 234 GMTPLHYAVVCDQFEICKLLLSQSS 258
>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis
thaliana GN=ACBP2 PE=1 SV=1
Length = 354
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 110/242 (45%), Gaps = 51/242 (21%)
Query: 108 LVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 167
L +K+ S + Y LYK AT G C +PS M A++K+ AW LG M
Sbjct: 123 LSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAM---------- 172
Query: 168 ALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESG 227
P ++AM KYI ++ ++ +W D ++G
Sbjct: 173 -----------------------PPEEAMEKYIEIVTQLYPTW---------LDGGVKAG 200
Query: 228 SK------ENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN 281
S+ N T G V S + ++ES+ + I+ +A+EG+++ L+K +
Sbjct: 201 SRGGDDAASNSRGTMGPVFSSLVYDEESENELKIDAIHGFAREGEVENLLKSIES--GIP 258
Query: 282 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY 341
+N D G LHWA DRGHL + + L++K ADVN D++G L YA + + E+
Sbjct: 259 VNARDSEGRTPLHWAIDRGHLNIAKVLVDK-NADVNAKDNEGQTPLHYAVVCDREAIAEF 317
Query: 342 LV 343
LV
Sbjct: 318 LV 319
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
++ K+FVG L W+ + L+ +FS+YG++++ +M DK T S+GFGFV F++ V V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 67 FSTDSHVLEGSRLSIQPSDSHNRMAENMEDR 97
++ H L+G + +P E R
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERSRPR 98
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
NKIFVG +P ELK++F+ +G + +++D +GFGF+TF+++++VD+ +
Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Query: 69 TDSHVLEGSRLSI---QPSDSHNRMA 91
H + G ++ + +P DS ++
Sbjct: 174 MHFHDIMGKKVEVKRAEPRDSKSQTP 199
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAV-DKVFS 68
+++VGNLPW V + L++ FSE+G++++A V+ D+ TG S+GFGFVT ++ V D + +
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 69 TDSHVLEGSRLSIQPSDSHNRMA 91
D L+G + + ++ R A
Sbjct: 210 LDGQTLDGRAVRVNVAEERPRRA 232
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS- 68
K+FVGNLP+ V +L F G + A V++++ T S+GFGFVT E +K
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 69 TDSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACD-YLPSLVKKLDSSTLLKFYALYKQA 127
+ + ++G +L++ + F +C Y+ +L +D+S L + ++ + +
Sbjct: 116 LNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKV 175
Query: 128 TVGQCNIDK 136
+ D+
Sbjct: 176 VSARVVSDR 184
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
++ K+FVG L W+ + L+ +FS+YG++++ +M DK T S+GFGFV F++ V V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 67 FSTDSHVLEGSRLSIQPSDSHNRMAENMEDR 97
++ H L+G + +P E +
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPK 98
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
NKIFVG +P EL+++F ++G + +++D +GFGF+TF+++++VD+ +
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 69 TDSHVLEGSRLSI---QPSDSHNRMA 91
H + G ++ + +P DS N+
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKNQAP 198
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
++ K+FVG L W+ + L+ +FS+YG++++ +M DK T S+GFGFV F++ V V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 67 FSTDSHVLEGSRLSIQPSDSHNRMAENMEDR 97
++ H L+G + +P E +
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPK 98
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
NKIFVG +P EL+++F ++G + +++D +GFGF+TF+++++VD+ +
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 69 TDSHVLEGSRLSI---QPSDS 86
H + G ++ + +P DS
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDS 193
>sp|Q502L1|ACB5A_DANRE Acyl-CoA-binding domain-containing protein 5A OS=Danio rerio
GN=acbd5a PE=2 SV=1
Length = 501
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
E RFN A + +L + +LKFY+ YKQAT G CNI +P +++ K+K++A
Sbjct: 10 EQRFNAAVKVIQNLPPNGSFQPSHDMMLKFYSYYKQATQGPCNIPRPGFWDPVGKAKWDA 69
Query: 151 WNSLGQMAKSEAMSKYIALLK 171
W+SLG+M K EAM+ Y+ LK
Sbjct: 70 WSSLGEMPKEEAMAAYVDDLK 90
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W S L+ +F YG I A VM D T S+GFGFVTF + +VDKV +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 70 DSHVLEGSRLSIQ---PSDSHNRMAENMEDRF 98
+H L+G ++ + P +H +M + F
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVTRTKKIF 121
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVD 64
+ + KIFVG L + ++K +F ++G I +A +MFDK T +GFGFVTFQ+++ VD
Sbjct: 114 VTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVD 173
Query: 65 KV 66
KV
Sbjct: 174 KV 175
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+FVG +P + E + FF+++G++++A++M DK+TG +GFGFVT++N+ AV+ S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 70 DSHVLEGSRLSIQPS-------DSHNR 89
+ G + ++ + DSH+R
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSHDR 334
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%)
Query: 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK 65
R+ K+F+G L W + + L+ +F ++G++++ +VM D TG S+GFGF+TF+N + V++
Sbjct: 160 REDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNE 219
Query: 66 VFSTDSHV 73
V S + H+
Sbjct: 220 VMSKEHHL 227
>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis
thaliana GN=ACBP4 PE=1 SV=1
Length = 668
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 96 DRFNQACDYL---------PSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKS 146
+RF A Y+ +++ K T L YALY+QATVG CN KPS + +S
Sbjct: 14 ERFYAAASYVGLDGSDSSAKNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQS 73
Query: 147 KYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEI 185
K+ +W LG M EAM ++ +L+E D GW + +I
Sbjct: 74 KWKSWQGLGTMPSIEAMRLFVKILEEDDPGWYSRASNDI 112
>sp|Q640U0|ACBD5_XENTR Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis
GN=acbd5 PE=2 SV=1
Length = 458
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 97 RFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 152
RF A + SL K + + +LKFY+ YKQAT+G CN +P +++ + K++AWN
Sbjct: 11 RFEAAVSVIQSLPKNGSFQPSNEMMLKFYSFYKQATLGPCNTPRPGFWDPVGRYKWDAWN 70
Query: 153 SLGQMAKSEAMSKYIALLKEV 173
SLG M+K +AM Y+ +K++
Sbjct: 71 SLGDMSKEDAMIAYVDEMKKI 91
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+++VGNLPW V + L++ FSE+G+++ A V++D+ TG S+GFGFVT + + +++ S
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 70 -DSHVLEGSRLSI 81
D LEG + +
Sbjct: 305 LDGQNLEGRAIRV 317
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQN-KEAVDKVFS 68
K+FVGNL + V+ L F + G + A V++++ T S+GFGFVT + EA V
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 69 TDSHVLEGSRLSI---QPSDSHNRMAENM-EDRFNQACDYLP 106
+ + L G L++ P S A + E F LP
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 252
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK-E 61
+ Q +I+VGN+PW + L++ FSE+G++++A V++D+ TG S+GFGFVT ++ E
Sbjct: 224 RTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAE 283
Query: 62 AVDKVFSTDSHVLEGSRLSIQPSDSHNR 89
D + + D L+G + + ++ +R
Sbjct: 284 MSDAIANLDGQSLDGRTIRVNVAEDRSR 311
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+FVGNLP+ V L + F + G + A V+++++T S+GFGFVT E +K
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 70 -DSHVLEGSRLSIQPSDSHNRMAENMEDRFNQA 101
+ + + G L++ + E F Q+
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFEQS 229
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+FVG L W + L ++F +G I++ VM + +G S+GFGFVTF + V+ V
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 70 DSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYA 122
H L+G + +P + + LPS V + D T Y
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYG 120
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G LP V+ +L+ FF+ YG++ +M+D+ S+GFGF++F+ + +V+ V +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 70 DSHVLEGSRLSIQ 82
L G ++ I+
Sbjct: 157 RYINLNGKQVEIK 169
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+FVG L W + EL+ F +YG+I + +V D TG S+GF F+ F N EA+DKV +
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 70 DSHVLEGSRL 79
D H++ ++
Sbjct: 117 DEHIINSKKV 126
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
KIFVG L +S E+K +F ++G I+ + FDK KGF F+TF +++ V + T
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 70 DSHVLEGSRLSIQ 82
+ G + ++
Sbjct: 197 PKQKIAGKEVDVK 209
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
K+FVG L W S +LK +F+++G++++ ++ D NTG S+GFGF+ F++ +V+KV
Sbjct: 75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
Query: 69 TDSHVLEG 76
H L+G
Sbjct: 135 QKEHRLDG 142
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+ KIFVG L + +++++F ++G+I + D +GF F+TF+ ++ V KV
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
Query: 68 STDSHVLEGSRLSIQ 82
H + GS+ I+
Sbjct: 218 EKKFHTVSGSKCEIK 232
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
KIFVG LP T++ E +++F YG + + ++M+D+ T +GFGFV+F +++AVD V
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 70 DSHVLEGSRLSIQ 82
H L G ++ ++
Sbjct: 171 TFHDLSGKQVEVK 183
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
K+FVG + W ++L++ F+ YG++ A VM DK TG +GFGFV F + +D+V
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
>sp|Q641E3|ACBD5_XENLA Acyl-CoA-binding domain-containing protein 5 OS=Xenopus laevis
GN=acbd5 PE=2 SV=1
Length = 467
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
+ RF A + SL K + + +LKFY+ YKQAT+G CN +P +++ + K++A
Sbjct: 9 QTRFEAAVSVIQSLPKNGSFQPSNEMMLKFYSFYKQATLGPCNTARPGFWDPVGRYKWDA 68
Query: 151 WNSLGQMAKSEAMSKYIALLKEV 173
WNSLG M+K +AM Y+ +K++
Sbjct: 69 WNSLGDMSKEDAMIAYVDEMKKI 91
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
L KIFVG L + + +++F+S++G+I + VM D T S+GFGFVTF K VD
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
Query: 68 STDSHVLEGSRLSIQ---PSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALY 124
H+++G + + P D NR N+ + Y+ + + L +++ Y
Sbjct: 82 KQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRL----YVSGVREDHTEDMLTEYFTKY 137
Query: 125 KQATVGQCNIDKPS 138
T + +DK +
Sbjct: 138 GTVTKSEIILDKAT 151
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+++V + + + L ++F++YG + + ++ DK T +GFGFVTF + ++VD+
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 70 DSHVLEGSRLSIQPSDSHNRMAENMEDR 97
SH++ G R ++ S + M++ +R
Sbjct: 175 KSHMVNGHRCDVRKGLSKDEMSKAQMNR 202
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF- 67
N+++VGNL W V + L+ FSE G++++A V++D+++G S+GFGFVT+ + E V+
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 68 STDSHVLEGSRLSIQPSDSH 87
S D L G + + P+++
Sbjct: 248 SLDGVDLNGRAIRVSPAEAR 267
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVD 64
KIFVGNLP++ L + F G + V++DK TG S+GFGFVT +KE V+
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVE 142
>sp|Q5R7V3|ACBD5_PONAB Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii
GN=ACBD5 PE=2 SV=1
Length = 525
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
E RF A + SL K + + +LKFY+ YKQAT G C + +P +++ + K++A
Sbjct: 44 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 103
Query: 151 WNSLGQMAKSEAMSKYIALLKEV 173
W+SLG M K EAMS Y+ +K++
Sbjct: 104 WSSLGDMTKEEAMSAYVEEMKKI 126
>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=ACBP5 PE=1 SV=1
Length = 648
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 96 DRFNQACDYL-----PSLVKKLDSS----TLLKFYALYKQATVGQCNIDKPSWYNMEAKS 146
+RF A Y+ S VK+L S T L Y L++QAT+G C+I KPS +N +S
Sbjct: 15 ERFYAAASYVGLDGSQSSVKQLSSKFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQS 74
Query: 147 KYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEI 185
K+ +W LG M EAM ++ +L+E D GW + +
Sbjct: 75 KWKSWQGLGTMPSIEAMRLFVKILEEADPGWYPRTSNSV 113
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
K+FVG L W S +LK +F+++G++++ ++ D NTG S+GFGF+ F++ +V+KV
Sbjct: 69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 128
Query: 69 TDSHVLEG 76
H L+G
Sbjct: 129 QKEHRLDG 136
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 8 LNKIFVGNL-PWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
+ KIFVG L P + + +++++F E+G+I + D +GF F+TF+ +E V KV
Sbjct: 152 VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 67 FSTDSHVLEGSRLSIQ 82
H + GS+ I+
Sbjct: 212 LEKKFHTVSGSKCEIK 227
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF- 67
N+++VGNL W V + L+ FSE G++++A V++D+++G S+GFGFVT+ + E V+
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253
Query: 68 STDSHVLEGSRLSIQPSDSH 87
S D L G + + P+++
Sbjct: 254 SLDGVDLNGRAIRVSPAEAR 273
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVD 64
KIFVGNL ++ L + F G + V++DK TG S+GFGFVT +KE V+
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVE 142
>sp|Q2KHT9|ACBD4_BOVIN Acyl-CoA-binding domain-containing protein 4 OS=Bos taurus GN=ACBD4
PE=2 SV=1
Length = 303
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 117 LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEV 173
+L+FY+ YKQAT+G C I +P +++ + K+ AWNSLGQM++ EAMS YI +K V
Sbjct: 39 MLRFYSYYKQATMGPCLIPQPGFWDPIGRYKWEAWNSLGQMSREEAMSAYITEMKLV 95
>sp|P07106|ACBD5_BOVIN Acyl-CoA-binding domain-containing protein 5 OS=Bos taurus GN=ACBD5
PE=2 SV=2
Length = 533
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
E RF A + SL K + + +LKFY+ YKQAT G C + KP +++ + K++A
Sbjct: 43 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSKPGFWDPVGRYKWDA 102
Query: 151 WNSLGQMAKSEAMSKYIALLKEV 173
W+SLG M K EAM Y+ +K++
Sbjct: 103 WSSLGDMTKEEAMIAYVEEMKKI 125
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVFS 68
+I+VGN+PW + L++ FSE+G++++A V+FD+ +G S+GFGFVT ++ E + + +
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 69 TDSHVLEGSRLSIQPSDSHNR 89
D L+G + + ++ R
Sbjct: 252 LDGQTLDGRTIRVNAAEERPR 272
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK 65
K+FVGNLP+ + L + F + G + A V++++ T S+GFGFVT E DK
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153
>sp|Q32P59|SLIRP_BOVIN SRA stem-loop-interacting RNA-binding protein, mitochondrial
OS=Bos taurus GN=SLIRP PE=3 SV=1
Length = 111
Score = 68.2 bits (165), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 47/72 (65%)
Query: 12 FVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDS 71
FV +PWT + +EL++ F+++G + +V FDK TG KG G++ F ++E + ++
Sbjct: 22 FVRKIPWTAASSELREHFAQFGHVRKCTVPFDKETGFHKGMGWIHFSSEEELHNALQQEN 81
Query: 72 HVLEGSRLSIQP 83
HV++G +L +QP
Sbjct: 82 HVIDGVKLHVQP 93
>sp|Q5ZHQ6|ACBD5_CHICK Acyl-CoA-binding domain-containing protein 5 OS=Gallus gallus
GN=ACBD5 PE=2 SV=1
Length = 492
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 97 RFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWN 152
RF A + SL K + + +LKFY+ YKQAT G CNI +P +++ + K++AW+
Sbjct: 11 RFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATQGPCNIPRPGFWDPIGRYKWDAWS 70
Query: 153 SLGQMAKSEAMSKYIALLKEV 173
+LG M+K EAM Y+ +K++
Sbjct: 71 ALGDMSKEEAMIAYVEEMKKI 91
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W + +LK +FS++G++++ ++ D TG S+GFGFV F+ E+VDKV
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 70 DSHVLEG 76
H L G
Sbjct: 158 KEHKLNG 164
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+ KIFVG L +++++F +G++ + + D T +GF F+TF+ +E V K+
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 68 STDSHVLEGSRLSIQ 82
H + S+ I+
Sbjct: 241 EKKYHNVGLSKCEIK 255
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W + +LK +FS++G++++ ++ D TG S+GFGFV F+ E+VDKV
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 70 DSHVLEG 76
H L G
Sbjct: 158 KEHKLNG 164
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+ KIFVG L +++++F +G++ + + D T +GF F+TF+ +E V K+
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 68 STDSHVLEGSRLSIQ 82
H + S+ I+
Sbjct: 241 EKKYHNVGLSKCEIK 255
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 43/57 (75%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
KIFVG + V E ++FFS++G I++A +M DK+TG S+GFGFVT+ + +AVD+V
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 300
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W + + L+++F +YG + + +M D TG S+GFGF++F+ +VD+V T
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 70 DSHVLEG 76
H+L+G
Sbjct: 220 -QHILDG 225
>sp|Q6DGF9|ACBD4_RAT Acyl-CoA-binding domain-containing protein 4 OS=Rattus norvegicus
GN=Acbd4 PE=2 SV=1
Length = 326
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 42/57 (73%)
Query: 117 LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEV 173
+L+FY+ YKQAT G C + +P +++ + K++AWNSLG+M++ EAMS YI +K V
Sbjct: 37 MLRFYSYYKQATAGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLV 93
>sp|Q5XG73|ACBD5_MOUSE Acyl-CoA-binding domain-containing protein 5 OS=Mus musculus
GN=Acbd5 PE=1 SV=1
Length = 508
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
E RF A + SL K + + +LKFY+ YKQAT G C + +P +++ + K++A
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104
Query: 151 WNSLGQMAKSEAMSKYIALLKEV 173
W+SLG M K EAM Y+ +K++
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMKKI 127
>sp|Q5T8D3|ACBD5_HUMAN Acyl-CoA-binding domain-containing protein 5 OS=Homo sapiens
GN=ACBD5 PE=1 SV=1
Length = 534
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
E RF A + SL K + + +LKFY+ YKQAT G C + +P +++ + K++A
Sbjct: 42 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 101
Query: 151 WNSLGQMAKSEAMSKYIALLKEV 173
W+SLG M K EAM Y+ +K++
Sbjct: 102 WSSLGDMTKEEAMIAYVEEMKKI 124
>sp|Q8NC06|ACBD4_HUMAN Acyl-CoA-binding domain-containing protein 4 OS=Homo sapiens
GN=ACBD4 PE=1 SV=2
Length = 268
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 117 LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEV 173
+L+FY+ YKQAT+G C + +P +++ + K++AWNSLG+M++ EAMS YI +K V
Sbjct: 39 MLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLV 95
>sp|Q5R7P6|ACBD4_PONAB Acyl-CoA-binding domain-containing protein 4 OS=Pongo abelii
GN=ACBD4 PE=2 SV=1
Length = 269
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 117 LLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEV 173
+L+FY+ YKQAT+G C + +P +++ + K++AWNSLG+M++ EAMS YI +K V
Sbjct: 39 MLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLV 95
>sp|Q5FXM5|ACBP_DICDI Acyl-CoA-binding protein OS=Dictyostelium discoideum GN=acbA PE=1
SV=1
Length = 84
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 157
F +A + KK + LL Y LYKQ T G CNI +P +EAK+KYNAWN+L
Sbjct: 4 FEEAAQKVKEFTKKPSNDELLSLYGLYKQGTDGDCNISEPWAVQVEAKAKYNAWNALKGT 63
Query: 158 AKSEAMSKYIALLKEV 173
+K +A +KY+AL +++
Sbjct: 64 SKEDAKAKYVALYEQL 79
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W + +LK +FS++G +++ ++ D TG S+GFGFV F+ E+VDKV
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 70 DSHVLEG 76
H L G
Sbjct: 156 KEHKLNG 162
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+ KIFVG L +++++F +G++ + + D T +GF F+TF+ +E V K+
Sbjct: 179 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 238
Query: 68 STDSHVLEGSRLSIQ 82
H + S+ I+
Sbjct: 239 EKKYHNVGLSKCEIK 253
>sp|A0FKI7|ACBD5_RAT Acyl-CoA-binding domain-containing protein 5 OS=Rattus norvegicus
GN=Acbd5 PE=1 SV=1
Length = 506
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
E RF A + SL K + + +L+FY+ YKQAT G C + +P +++ + K++A
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLRFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104
Query: 151 WNSLGQMAKSEAMSKYIALLKEV 173
W+SLG M K EAM Y+ +K++
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMKKI 127
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+K+F+G L W S +L ++ S +G++++ ++ D TG S+GFGFV F++ +VDKV
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 69 TDSHVLEG 76
T H L+G
Sbjct: 94 TKEHKLDG 101
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+FVG L + ++K++F +G+I N + D T +GF FVT+ ++E V K+ +
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLES 179
Query: 70 DSHVLEGSRLSIQ 82
H + + I+
Sbjct: 180 RFHQIGTGKCEIK 192
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
NK+F+G L W S +L ++ S +G++++ ++ D TG S+GFGFV F++ +VDKV
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 110
Query: 69 TDSHVLEG 76
H L+G
Sbjct: 111 LKEHKLDG 118
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+FVG L S ++K++F +G+I N + D T +GF F+T+ ++E V K+ +
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 70 DSHVLEGSRLSIQ 82
H + + I+
Sbjct: 197 RYHQIGSGKCEIK 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,672,893
Number of Sequences: 539616
Number of extensions: 5530635
Number of successful extensions: 20470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 716
Number of HSP's that attempted gapping in prelim test: 17138
Number of HSP's gapped (non-prelim): 3465
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)