Query psy630
Match_columns 347
No_of_seqs 449 out of 5727
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 3.7E-23 8E-28 187.7 10.6 148 5-166 104-252 (346)
2 TIGR01645 half-pint poly-U bin 99.9 9.6E-22 2.1E-26 187.6 9.5 154 5-165 104-262 (612)
3 PTZ00458 acyl CoA binding prot 99.9 6.1E-22 1.3E-26 141.9 5.9 84 97-180 4-89 (90)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.4E-21 3.1E-26 180.8 9.7 146 7-166 2-148 (352)
5 KOG4412|consensus 99.8 1.2E-21 2.7E-26 154.6 5.6 126 221-347 33-163 (226)
6 KOG4412|consensus 99.8 7.1E-21 1.5E-25 150.3 7.9 99 247-347 98-196 (226)
7 TIGR01622 SF-CC1 splicing fact 99.8 1.3E-20 2.8E-25 180.3 10.3 155 4-165 85-244 (457)
8 cd00435 ACBP Acyl CoA binding 99.8 1.2E-20 2.5E-25 135.1 5.5 82 96-177 3-84 (85)
9 TIGR01628 PABP-1234 polyadenyl 99.8 5E-20 1.1E-24 180.4 10.0 143 10-165 2-145 (562)
10 KOG0131|consensus 99.8 9.5E-20 2.1E-24 143.5 7.0 121 3-129 4-125 (203)
11 KOG0145|consensus 99.8 1.5E-19 3.3E-24 149.8 6.5 146 7-166 40-186 (360)
12 KOG0817|consensus 99.8 1E-19 2.2E-24 141.0 5.2 87 95-181 6-92 (142)
13 KOG0148|consensus 99.8 3.7E-19 8E-24 148.5 7.7 128 9-136 63-200 (321)
14 KOG0144|consensus 99.8 3.3E-19 7.2E-24 157.6 6.8 125 6-136 32-160 (510)
15 KOG0117|consensus 99.8 7.8E-19 1.7E-23 156.0 6.8 169 4-185 79-279 (506)
16 PF00887 ACBP: Acyl CoA bindin 99.8 2.2E-19 4.9E-24 130.4 2.8 84 95-178 2-87 (87)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.6E-18 9.9E-23 157.3 10.3 171 7-190 88-346 (352)
18 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-17 2.4E-22 159.7 11.1 109 5-127 55-165 (578)
19 TIGR01628 PABP-1234 polyadenyl 99.7 7.5E-18 1.6E-22 165.1 9.9 152 6-166 176-343 (562)
20 COG4281 ACB Acyl-CoA-binding p 99.7 3.6E-18 7.7E-23 113.6 4.4 82 96-177 4-85 (87)
21 PHA02743 Viral ankyrin protein 99.7 3.2E-17 6.9E-22 134.9 9.9 99 248-347 50-152 (166)
22 PLN03134 glycine-rich RNA-bind 99.7 4.7E-17 1E-21 129.7 9.9 83 6-88 32-115 (144)
23 PF12796 Ank_2: Ankyrin repeat 99.7 7.7E-17 1.7E-21 118.5 10.1 83 259-347 1-83 (89)
24 KOG0149|consensus 99.7 3.9E-17 8.4E-22 134.3 8.0 80 7-86 11-90 (247)
25 KOG0509|consensus 99.7 6.6E-17 1.4E-21 150.7 9.1 99 247-347 70-169 (600)
26 KOG0508|consensus 99.7 3.6E-17 7.9E-22 146.9 6.2 101 245-347 107-207 (615)
27 KOG0512|consensus 99.7 1E-16 2.3E-21 125.9 8.0 96 247-344 89-185 (228)
28 PHA02736 Viral ankyrin protein 99.7 1E-16 2.2E-21 130.4 8.0 97 250-347 50-150 (154)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 2.7E-16 5.8E-21 150.7 11.9 122 8-135 2-131 (481)
30 PHA02791 ankyrin-like protein; 99.7 3.3E-16 7.2E-21 139.0 11.5 91 254-346 60-151 (284)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.6E-16 3.4E-21 154.3 9.7 166 6-179 293-490 (509)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.2E-16 2.5E-21 155.2 8.7 148 5-165 172-353 (509)
33 PHA02741 hypothetical protein; 99.7 3.7E-16 8.1E-21 129.1 10.1 100 247-347 52-156 (169)
34 KOG0195|consensus 99.7 1.9E-16 4E-21 134.2 8.0 99 247-347 26-124 (448)
35 PHA02741 hypothetical protein; 99.7 7.2E-16 1.6E-20 127.4 10.5 98 249-347 15-123 (169)
36 KOG0124|consensus 99.7 8.6E-17 1.9E-21 139.6 5.0 123 8-132 113-242 (544)
37 KOG0512|consensus 99.6 3.6E-16 7.9E-21 122.9 7.7 89 257-347 66-154 (228)
38 PHA02791 ankyrin-like protein; 99.6 1.2E-15 2.5E-20 135.6 11.1 98 246-347 85-184 (284)
39 KOG0127|consensus 99.6 4.9E-16 1.1E-20 141.4 8.8 126 9-134 6-151 (678)
40 KOG4214|consensus 99.6 5.6E-16 1.2E-20 109.1 6.9 82 262-347 10-91 (117)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1E-15 2.2E-20 146.7 10.7 146 7-166 274-453 (481)
42 KOG0127|consensus 99.6 3.1E-16 6.7E-21 142.7 6.6 153 9-170 118-354 (678)
43 PHA02875 ankyrin repeat protei 99.6 1.6E-15 3.4E-20 143.5 11.5 100 246-347 126-226 (413)
44 PHA02795 ankyrin-like protein; 99.6 1.7E-15 3.8E-20 139.9 10.6 92 254-347 187-286 (437)
45 PHA02878 ankyrin repeat protei 99.6 2E-15 4.4E-20 145.2 11.2 99 247-347 159-259 (477)
46 PHA02874 ankyrin repeat protei 99.6 2.8E-15 6.1E-20 142.6 11.5 100 246-347 115-214 (434)
47 PHA02859 ankyrin repeat protei 99.6 4.1E-15 9E-20 127.0 11.2 100 246-347 77-183 (209)
48 PHA02884 ankyrin repeat protei 99.6 4.2E-15 9E-20 132.2 11.4 89 257-347 35-128 (300)
49 PHA02859 ankyrin repeat protei 99.6 5.4E-15 1.2E-19 126.3 11.3 98 248-347 44-149 (209)
50 KOG0117|consensus 99.6 2.2E-15 4.7E-20 134.3 9.0 124 6-131 162-290 (506)
51 PF00076 RRM_1: RNA recognitio 99.6 4.3E-15 9.3E-20 103.8 8.5 69 11-80 1-70 (70)
52 KOG0509|consensus 99.6 2.4E-15 5.2E-20 140.4 9.0 100 246-347 102-202 (600)
53 PLN03192 Voltage-dependent pot 99.6 4.4E-15 9.5E-20 151.4 11.5 103 243-347 546-679 (823)
54 PHA02743 Viral ankyrin protein 99.6 4E-15 8.7E-20 122.4 9.0 97 249-347 14-119 (166)
55 TIGR01648 hnRNP-R-Q heterogene 99.6 4.3E-15 9.2E-20 142.1 9.9 143 7-166 137-286 (578)
56 KOG4205|consensus 99.6 2.2E-15 4.7E-20 133.1 7.2 129 6-135 4-132 (311)
57 KOG0502|consensus 99.6 1.8E-15 4E-20 123.4 6.1 99 247-347 152-250 (296)
58 KOG0105|consensus 99.6 4.7E-15 1E-19 117.3 8.0 135 5-142 3-157 (241)
59 PF13637 Ank_4: Ankyrin repeat 99.6 3.8E-15 8.2E-20 98.4 6.3 54 289-343 1-54 (54)
60 PHA02875 ankyrin repeat protei 99.6 1.2E-14 2.5E-19 137.6 11.5 95 251-347 98-192 (413)
61 PHA03095 ankyrin-like protein; 99.6 1E-14 2.2E-19 140.2 11.2 101 245-347 212-314 (471)
62 PHA02798 ankyrin-like protein; 99.6 1.1E-14 2.3E-19 140.6 10.8 102 244-347 60-172 (489)
63 TIGR01622 SF-CC1 splicing fact 99.6 3.5E-14 7.5E-19 136.0 13.6 78 8-85 186-264 (457)
64 KOG0515|consensus 99.6 8.3E-15 1.8E-19 133.2 8.5 87 258-347 554-640 (752)
65 PF13857 Ank_5: Ankyrin repeat 99.6 3.5E-15 7.6E-20 99.1 4.5 51 279-330 6-56 (56)
66 KOG0123|consensus 99.6 6.8E-15 1.5E-19 134.6 8.0 129 9-165 2-131 (369)
67 PHA03095 ankyrin-like protein; 99.6 1.6E-14 3.4E-19 139.0 10.9 99 247-347 75-178 (471)
68 KOG0110|consensus 99.6 7.2E-15 1.6E-19 138.0 8.2 155 9-170 516-676 (725)
69 PLN03120 nucleic acid binding 99.6 1.6E-14 3.5E-19 123.0 9.1 77 8-87 4-80 (260)
70 KOG0145|consensus 99.6 7.4E-15 1.6E-19 122.2 6.7 145 4-153 123-326 (360)
71 KOG0121|consensus 99.5 8.2E-15 1.8E-19 109.0 6.0 82 4-85 32-114 (153)
72 PHA02946 ankyin-like protein; 99.5 3E-14 6.4E-19 135.3 11.5 102 243-347 60-164 (446)
73 KOG0125|consensus 99.5 8.1E-15 1.8E-19 125.9 6.8 85 2-88 90-175 (376)
74 KOG0109|consensus 99.5 7.7E-15 1.7E-19 124.1 6.4 108 9-133 3-111 (346)
75 PHA03100 ankyrin repeat protei 99.5 2.6E-14 5.7E-19 137.7 11.0 100 246-347 97-200 (480)
76 PF14259 RRM_6: RNA recognitio 99.5 3.2E-14 6.9E-19 99.5 8.1 69 11-80 1-70 (70)
77 PHA02946 ankyin-like protein; 99.5 3.5E-14 7.6E-19 134.8 10.9 99 246-347 96-199 (446)
78 PHA03100 ankyrin repeat protei 99.5 3.5E-14 7.5E-19 136.9 10.8 99 247-347 201-307 (480)
79 KOG0123|consensus 99.5 2.1E-14 4.5E-19 131.4 8.6 130 6-138 74-205 (369)
80 PHA02878 ankyrin repeat protei 99.5 4.7E-14 1E-18 135.8 10.7 99 245-347 191-291 (477)
81 KOG0122|consensus 99.5 3.5E-14 7.7E-19 117.3 8.2 82 6-87 187-269 (270)
82 PHA02884 ankyrin repeat protei 99.5 6.8E-14 1.5E-18 124.4 10.5 88 252-341 67-155 (300)
83 KOG0510|consensus 99.5 3.6E-14 7.8E-19 135.5 8.8 127 220-347 267-401 (929)
84 PHA02874 ankyrin repeat protei 99.5 9E-14 2E-18 132.3 11.6 100 247-347 60-181 (434)
85 KOG4177|consensus 99.5 3.5E-14 7.7E-19 142.9 8.6 99 247-347 532-630 (1143)
86 PHA02716 CPXV016; CPX019; EVM0 99.5 7.9E-14 1.7E-18 137.5 10.7 101 245-347 202-343 (764)
87 KOG0113|consensus 99.5 6.5E-14 1.4E-18 119.0 7.9 79 6-84 99-178 (335)
88 PHA02736 Viral ankyrin protein 99.5 3E-14 6.5E-19 115.9 5.6 96 249-347 11-117 (154)
89 PHA02989 ankyrin repeat protei 99.5 1.4E-13 3E-18 133.1 10.7 98 246-346 209-312 (494)
90 KOG0126|consensus 99.5 4.4E-15 9.5E-20 117.2 0.2 83 6-88 33-116 (219)
91 TIGR01645 half-pint poly-U bin 99.5 9.8E-14 2.1E-18 133.1 9.4 81 7-87 203-284 (612)
92 PHA02716 CPXV016; CPX019; EVM0 99.5 1.8E-13 3.8E-18 135.1 11.2 84 246-331 167-255 (764)
93 PLN03213 repressor of silencin 99.5 5.8E-14 1.3E-18 126.6 7.0 77 7-87 9-88 (759)
94 KOG0510|consensus 99.5 1E-13 2.2E-18 132.4 8.6 99 248-347 266-365 (929)
95 KOG0514|consensus 99.5 6.6E-14 1.4E-18 122.4 6.5 145 194-345 240-395 (452)
96 PLN03121 nucleic acid binding 99.5 2.2E-13 4.7E-18 114.3 9.1 78 7-87 4-81 (243)
97 PHA02876 ankyrin repeat protei 99.5 2.6E-13 5.6E-18 136.3 11.2 100 246-347 366-467 (682)
98 PLN03192 Voltage-dependent pot 99.5 2.3E-13 5E-18 138.8 10.9 90 256-347 526-615 (823)
99 TIGR01659 sex-lethal sex-letha 99.5 2.3E-13 5E-18 123.8 9.5 82 7-88 192-276 (346)
100 KOG0514|consensus 99.5 1.9E-13 4.1E-18 119.5 8.2 92 252-344 337-428 (452)
101 KOG4207|consensus 99.5 9.7E-14 2.1E-18 111.9 5.8 85 2-86 7-92 (256)
102 COG0724 RNA-binding proteins ( 99.4 6.4E-13 1.4E-17 118.4 11.5 128 8-135 115-260 (306)
103 KOG4177|consensus 99.4 1.8E-13 3.8E-18 137.9 8.4 94 252-347 504-597 (1143)
104 PHA02917 ankyrin-like protein; 99.4 5.3E-13 1.1E-17 131.9 10.2 101 244-347 125-254 (661)
105 PHA02876 ankyrin repeat protei 99.4 8.1E-13 1.8E-17 132.7 11.3 99 247-347 333-433 (682)
106 KOG0505|consensus 99.4 2.4E-13 5.1E-18 124.6 6.7 36 312-347 220-255 (527)
107 KOG0508|consensus 99.4 2.4E-13 5.2E-18 122.6 6.4 93 253-347 82-174 (615)
108 PHA02917 ankyrin-like protein; 99.4 1.3E-12 2.8E-17 129.2 11.7 98 248-347 389-510 (661)
109 PTZ00322 6-phosphofructo-2-kin 99.4 9.3E-13 2E-17 130.8 10.7 85 258-345 86-170 (664)
110 PHA02798 ankyrin-like protein; 99.4 1.1E-12 2.4E-17 126.6 10.9 101 245-347 99-210 (489)
111 PHA02989 ankyrin repeat protei 99.4 9.9E-13 2.1E-17 127.1 10.5 102 244-347 97-209 (494)
112 PHA02795 ankyrin-like protein; 99.4 9.6E-13 2.1E-17 121.9 9.8 92 254-347 148-245 (437)
113 KOG0107|consensus 99.4 5.6E-13 1.2E-17 104.9 6.6 77 7-88 9-86 (195)
114 KOG0147|consensus 99.4 7.2E-14 1.6E-18 128.0 0.9 159 1-166 172-337 (549)
115 PHA02730 ankyrin-like protein; 99.4 2.1E-12 4.5E-17 125.3 11.0 99 247-347 409-522 (672)
116 PHA02730 ankyrin-like protein; 99.4 2E-12 4.3E-17 125.5 10.7 94 250-345 36-138 (672)
117 smart00362 RRM_2 RNA recogniti 99.4 2.1E-12 4.6E-17 89.9 8.2 71 10-82 1-72 (72)
118 KOG4206|consensus 99.4 4.2E-12 9E-17 104.6 10.2 133 4-139 5-185 (221)
119 KOG0505|consensus 99.4 9.1E-13 2E-17 120.8 6.5 92 253-347 39-130 (527)
120 cd00204 ANK ankyrin repeats; 99.4 1E-11 2.2E-16 96.4 11.4 93 252-346 4-96 (126)
121 KOG0111|consensus 99.3 4.1E-13 8.9E-18 109.2 3.2 84 5-88 7-91 (298)
122 KOG0114|consensus 99.3 2.8E-12 6E-17 92.0 6.9 82 4-88 14-96 (124)
123 smart00360 RRM RNA recognition 99.3 4.5E-12 9.8E-17 87.9 7.7 70 13-82 1-71 (71)
124 KOG1710|consensus 99.3 4.4E-12 9.6E-17 107.7 8.6 111 231-343 21-132 (396)
125 KOG0507|consensus 99.3 1.6E-12 3.4E-17 123.5 5.8 100 246-347 40-139 (854)
126 KOG0148|consensus 99.3 8.5E-12 1.9E-16 104.8 7.3 77 4-86 160-237 (321)
127 PHA02792 ankyrin-like protein; 99.3 9.8E-12 2.1E-16 119.5 8.8 100 246-347 363-477 (631)
128 KOG0195|consensus 99.3 1.6E-12 3.4E-17 110.6 2.8 88 257-346 3-90 (448)
129 COG0666 Arp FOG: Ankyrin repea 99.3 3E-11 6.6E-16 103.8 10.8 97 247-345 98-202 (235)
130 KOG1710|consensus 99.3 4.6E-12 9.9E-17 107.7 5.4 95 250-347 8-103 (396)
131 KOG0108|consensus 99.3 8.5E-12 1.8E-16 115.2 7.3 81 9-89 19-100 (435)
132 cd00590 RRM RRM (RNA recogniti 99.3 3.7E-11 8.1E-16 84.0 8.7 72 10-82 1-73 (74)
133 PF13637 Ank_4: Ankyrin repeat 99.3 1.9E-11 4.1E-16 80.5 6.6 54 255-309 1-54 (54)
134 KOG0130|consensus 99.2 8.6E-12 1.9E-16 93.8 5.1 77 10-86 74-151 (170)
135 PF12796 Ank_2: Ankyrin repeat 99.2 2.2E-11 4.7E-16 89.2 7.0 64 255-320 26-89 (89)
136 KOG4211|consensus 99.2 1.6E-11 3.4E-16 111.4 7.3 161 2-170 4-169 (510)
137 KOG0144|consensus 99.2 6.8E-12 1.5E-16 111.8 4.4 84 7-91 123-210 (510)
138 COG0666 Arp FOG: Ankyrin repea 99.2 4.5E-11 9.8E-16 102.7 9.4 97 249-347 67-171 (235)
139 PHA02792 ankyrin-like protein; 99.2 5E-11 1.1E-15 114.7 10.0 90 256-347 340-434 (631)
140 TIGR00870 trp transient-recept 99.2 6.7E-11 1.5E-15 120.0 10.9 105 241-347 68-199 (743)
141 KOG0502|consensus 99.2 1.7E-11 3.6E-16 100.5 5.0 95 247-344 185-279 (296)
142 KOG0515|consensus 99.2 3.4E-11 7.3E-16 110.1 6.6 96 246-343 574-672 (752)
143 KOG4212|consensus 99.2 7.7E-11 1.7E-15 105.2 8.2 130 5-136 41-172 (608)
144 cd00204 ANK ankyrin repeats; 99.2 2.8E-10 6.1E-15 88.1 10.2 93 249-343 34-126 (126)
145 KOG4214|consensus 99.2 1.3E-10 2.9E-15 82.1 7.3 76 253-330 32-107 (117)
146 TIGR00870 trp transient-recept 99.1 7.9E-11 1.7E-15 119.5 7.8 80 253-334 126-219 (743)
147 smart00361 RRM_1 RNA recogniti 99.1 3.2E-10 6.8E-15 78.9 6.8 60 22-81 2-69 (70)
148 KOG0506|consensus 99.1 1.2E-10 2.7E-15 105.1 5.1 88 256-345 508-595 (622)
149 KOG4205|consensus 99.0 2.2E-10 4.7E-15 101.6 5.5 120 7-128 96-215 (311)
150 KOG3676|consensus 99.0 4.5E-10 9.7E-15 108.2 7.7 94 252-347 181-297 (782)
151 KOG1457|consensus 99.0 1.7E-09 3.7E-14 88.6 9.4 83 4-86 30-117 (284)
152 KOG0131|consensus 99.0 3.3E-10 7.1E-15 90.0 4.5 84 5-88 93-178 (203)
153 KOG0147|consensus 99.0 4.8E-10 1E-14 103.2 5.5 81 7-87 277-358 (549)
154 KOG0705|consensus 99.0 9E-10 2E-14 101.8 7.2 95 252-347 622-718 (749)
155 KOG0507|consensus 99.0 2.9E-10 6.4E-15 108.4 3.9 110 234-345 57-170 (854)
156 KOG0153|consensus 99.0 8.4E-10 1.8E-14 96.1 6.2 75 6-86 226-302 (377)
157 KOG0146|consensus 99.0 9.6E-10 2.1E-14 92.4 6.0 84 6-89 283-367 (371)
158 PF13893 RRM_5: RNA recognitio 99.0 8.9E-10 1.9E-14 73.1 4.5 55 25-84 1-56 (56)
159 KOG0818|consensus 99.0 2.6E-09 5.7E-14 97.1 8.7 85 257-344 136-221 (669)
160 PF13606 Ank_3: Ankyrin repeat 98.9 1.2E-09 2.6E-14 62.0 3.6 30 288-318 1-30 (30)
161 PF00023 Ank: Ankyrin repeat H 98.9 2.1E-09 4.6E-14 62.8 4.2 33 288-321 1-33 (33)
162 KOG4208|consensus 98.9 2.6E-09 5.7E-14 86.8 5.9 78 9-86 50-129 (214)
163 PF13857 Ank_5: Ankyrin repeat 98.9 2.5E-09 5.4E-14 70.8 3.8 50 246-296 7-56 (56)
164 KOG3676|consensus 98.9 6.8E-09 1.5E-13 100.3 8.2 90 254-345 239-330 (782)
165 KOG0106|consensus 98.9 3E-09 6.5E-14 88.7 4.9 116 9-132 2-131 (216)
166 KOG0124|consensus 98.8 4.1E-09 8.8E-14 92.3 5.7 83 4-86 206-289 (544)
167 KOG0415|consensus 98.8 3.9E-09 8.5E-14 92.1 5.3 82 7-88 238-320 (479)
168 KOG0783|consensus 98.8 1.5E-09 3.3E-14 104.3 2.9 85 246-332 43-128 (1267)
169 KOG0146|consensus 98.8 3.5E-09 7.6E-14 89.0 4.6 83 7-90 18-104 (371)
170 KOG0109|consensus 98.8 3.7E-09 7.9E-14 90.0 4.6 77 5-89 75-152 (346)
171 PTZ00322 6-phosphofructo-2-kin 98.8 9.7E-09 2.1E-13 102.3 7.7 85 245-331 105-196 (664)
172 KOG4661|consensus 98.8 1.3E-08 2.8E-13 94.0 6.4 80 7-86 404-484 (940)
173 KOG0116|consensus 98.8 1.6E-08 3.4E-13 93.3 6.9 81 6-86 286-366 (419)
174 PF13606 Ank_3: Ankyrin repeat 98.8 1E-08 2.2E-13 58.2 3.5 26 322-347 1-26 (30)
175 KOG0110|consensus 98.7 1.1E-08 2.3E-13 97.1 4.7 82 8-89 613-695 (725)
176 KOG4454|consensus 98.7 7.1E-09 1.5E-13 84.8 2.7 116 3-136 4-120 (267)
177 KOG0522|consensus 98.7 4.2E-08 9.1E-13 90.5 7.9 87 257-344 22-109 (560)
178 KOG4369|consensus 98.7 8.4E-09 1.8E-13 102.0 2.8 92 254-347 756-848 (2131)
179 KOG4212|consensus 98.7 2.8E-08 6.2E-13 89.1 5.7 74 5-83 533-607 (608)
180 KOG1548|consensus 98.7 5.8E-08 1.2E-12 84.8 7.1 164 4-184 130-345 (382)
181 KOG0783|consensus 98.6 3E-08 6.4E-13 95.6 4.2 77 270-347 33-110 (1267)
182 KOG4209|consensus 98.6 5.9E-08 1.3E-12 83.1 5.2 81 6-86 99-179 (231)
183 PF00023 Ank: Ankyrin repeat H 98.6 7.7E-08 1.7E-12 56.1 3.6 26 322-347 1-26 (33)
184 KOG0226|consensus 98.6 6.3E-08 1.4E-12 81.1 4.2 86 3-88 185-271 (290)
185 KOG0132|consensus 98.6 1E-07 2.2E-12 91.3 6.2 77 8-90 421-498 (894)
186 KOG0129|consensus 98.5 2.6E-07 5.7E-12 85.0 7.8 130 5-135 256-406 (520)
187 KOG0533|consensus 98.5 2.6E-07 5.6E-12 78.9 7.1 80 7-87 82-162 (243)
188 KOG4369|consensus 98.4 1.9E-07 4.2E-12 92.7 2.9 99 247-347 782-881 (2131)
189 KOG2384|consensus 98.4 8.9E-07 1.9E-11 71.4 6.0 66 279-345 2-68 (223)
190 KOG0511|consensus 98.3 8.7E-07 1.9E-11 78.6 6.1 73 256-332 38-110 (516)
191 PF04059 RRM_2: RNA recognitio 98.3 3.7E-06 8.1E-11 61.5 8.3 67 9-75 2-71 (97)
192 KOG0782|consensus 98.3 2.3E-06 4.9E-11 79.7 8.5 92 252-344 896-988 (1004)
193 KOG0782|consensus 98.3 1.1E-06 2.5E-11 81.6 6.3 92 253-347 865-958 (1004)
194 KOG0520|consensus 98.3 3.7E-07 8.1E-12 90.7 3.2 96 251-347 570-665 (975)
195 KOG0151|consensus 98.3 1.1E-06 2.3E-11 83.7 5.7 82 5-86 171-256 (877)
196 KOG0120|consensus 98.3 1.9E-06 4.1E-11 80.7 6.6 84 5-88 286-370 (500)
197 KOG4660|consensus 98.2 1.1E-06 2.4E-11 81.6 4.3 72 4-80 71-143 (549)
198 KOG1190|consensus 98.2 5.1E-06 1.1E-10 74.4 8.2 116 8-128 297-442 (492)
199 KOG0521|consensus 98.2 1.7E-06 3.7E-11 86.5 4.8 89 253-343 654-742 (785)
200 KOG0128|consensus 98.1 7.2E-08 1.6E-12 93.3 -5.3 124 4-156 663-786 (881)
201 KOG1365|consensus 98.1 4E-06 8.7E-11 74.4 5.8 142 10-156 163-333 (508)
202 KOG3609|consensus 98.1 6.5E-06 1.4E-10 80.5 6.9 95 252-347 23-155 (822)
203 KOG0520|consensus 97.9 5.1E-06 1.1E-10 82.9 2.6 95 248-344 601-701 (975)
204 KOG4210|consensus 97.9 1.8E-05 4E-10 70.2 5.5 142 7-153 87-233 (285)
205 KOG1190|consensus 97.9 1.1E-05 2.4E-10 72.2 3.9 117 6-128 26-178 (492)
206 KOG0129|consensus 97.9 4.4E-05 9.5E-10 70.7 7.5 83 3-85 365-452 (520)
207 KOG4211|consensus 97.9 2.6E-05 5.7E-10 71.6 6.0 76 7-83 102-178 (510)
208 KOG1995|consensus 97.9 1.8E-05 4E-10 70.0 4.9 83 6-88 64-155 (351)
209 KOG0521|consensus 97.7 2.1E-05 4.5E-10 78.9 3.4 68 279-347 644-713 (785)
210 KOG4210|consensus 97.7 2.7E-05 5.9E-10 69.1 3.6 81 8-88 184-265 (285)
211 KOG0511|consensus 97.7 0.00014 2.9E-09 65.1 6.9 57 290-347 37-93 (516)
212 PF11608 Limkain-b1: Limkain b 97.6 0.00024 5.3E-09 49.7 6.0 67 10-86 4-76 (90)
213 KOG0112|consensus 97.6 3.3E-05 7.1E-10 75.8 2.4 126 4-139 368-494 (975)
214 KOG0705|consensus 97.6 0.00013 2.7E-09 68.5 6.0 66 249-316 655-720 (749)
215 COG5175 MOT2 Transcriptional r 97.5 0.00016 3.5E-09 63.4 5.6 80 8-87 114-203 (480)
216 KOG0120|consensus 97.5 0.00011 2.3E-09 69.2 4.3 142 5-157 172-341 (500)
217 KOG1365|consensus 97.5 0.00015 3.3E-09 64.6 5.0 145 7-156 59-215 (508)
218 PF08777 RRM_3: RNA binding mo 97.4 0.00028 6E-09 52.9 5.3 54 10-69 3-56 (105)
219 KOG0506|consensus 97.4 9.6E-05 2.1E-09 67.8 3.2 60 285-345 502-561 (622)
220 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00057 1.2E-08 44.3 5.6 52 9-67 2-53 (53)
221 KOG2193|consensus 97.3 0.00019 4E-09 64.8 3.9 106 9-129 2-109 (584)
222 KOG1457|consensus 97.3 0.00025 5.4E-09 58.8 3.8 62 9-74 211-273 (284)
223 KOG3878|consensus 97.3 0.00029 6.3E-09 61.6 4.3 70 110-179 51-123 (469)
224 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0012 2.7E-08 48.7 6.7 77 7-84 5-89 (100)
225 KOG4849|consensus 97.2 0.00026 5.7E-09 62.4 3.3 75 10-84 82-159 (498)
226 KOG0818|consensus 97.2 0.00065 1.4E-08 62.8 5.7 67 243-310 154-221 (669)
227 smart00248 ANK ankyrin repeats 97.2 0.00068 1.5E-08 36.8 3.7 28 289-317 2-29 (30)
228 KOG4676|consensus 97.1 0.00058 1.3E-08 61.2 4.4 125 8-132 7-183 (479)
229 PLN03134 glycine-rich RNA-bind 97.1 0.00013 2.7E-09 58.3 -0.2 61 99-166 33-93 (144)
230 KOG0522|consensus 97.1 0.0015 3.2E-08 61.2 6.6 62 249-311 49-110 (560)
231 smart00248 ANK ankyrin repeats 97.0 0.00099 2.1E-08 36.1 3.6 26 322-347 1-26 (30)
232 KOG3152|consensus 97.0 0.00058 1.2E-08 57.9 3.3 72 7-78 73-157 (278)
233 KOG4206|consensus 96.9 0.0035 7.7E-08 52.4 6.9 75 5-84 143-219 (221)
234 KOG0106|consensus 96.9 0.00071 1.5E-08 56.9 2.7 72 6-85 97-169 (216)
235 KOG0149|consensus 96.8 0.00036 7.8E-09 58.4 0.4 69 101-180 13-81 (247)
236 KOG2505|consensus 96.7 0.0046 9.9E-08 57.5 6.9 67 263-331 399-471 (591)
237 PF00076 RRM_1: RNA recognitio 96.7 0.0008 1.7E-08 46.0 1.6 55 103-165 1-55 (70)
238 KOG4307|consensus 96.7 0.004 8.7E-08 60.0 6.4 74 9-82 868-942 (944)
239 KOG0121|consensus 96.3 0.0018 3.9E-08 49.1 1.1 82 93-185 29-110 (153)
240 PF08952 DUF1866: Domain of un 96.2 0.01 2.2E-07 46.6 5.0 55 24-86 52-106 (146)
241 KOG2384|consensus 96.2 0.014 3E-07 47.6 5.8 73 247-321 4-77 (223)
242 KOG0126|consensus 96.1 0.00046 1E-08 55.4 -2.8 53 99-156 34-86 (219)
243 KOG1456|consensus 96.1 0.034 7.5E-07 49.9 8.5 113 8-125 287-431 (494)
244 KOG0122|consensus 96.1 0.0014 3.1E-08 55.2 -0.1 60 99-165 188-247 (270)
245 KOG0105|consensus 96.1 0.023 5.1E-07 46.0 6.7 57 6-69 113-169 (241)
246 KOG0128|consensus 96.1 0.0036 7.8E-08 61.7 2.6 77 9-86 737-814 (881)
247 KOG1855|consensus 96.0 0.0059 1.3E-07 55.6 3.5 63 7-69 230-305 (484)
248 KOG2314|consensus 96.0 0.0099 2.1E-07 56.0 4.9 75 7-82 57-139 (698)
249 PF08675 RNA_bind: RNA binding 95.9 0.048 1E-06 38.3 6.7 56 5-69 6-61 (87)
250 KOG0114|consensus 95.9 0.0046 1E-07 45.1 1.7 36 100-135 18-53 (124)
251 KOG1456|consensus 95.6 0.034 7.4E-07 49.9 6.2 118 6-130 29-152 (494)
252 KOG0115|consensus 95.4 0.018 3.8E-07 49.1 3.8 74 9-83 32-110 (275)
253 KOG0112|consensus 95.4 0.024 5.1E-07 56.5 5.1 78 4-87 451-531 (975)
254 KOG1548|consensus 95.4 0.035 7.5E-07 49.4 5.6 78 5-86 262-351 (382)
255 KOG3609|consensus 95.2 0.02 4.4E-07 56.8 3.9 63 255-319 89-160 (822)
256 PLN03213 repressor of silencin 95.1 0.0092 2E-07 55.3 1.3 34 100-133 10-43 (759)
257 PLN03120 nucleic acid binding 95.1 0.013 2.8E-07 50.8 2.1 37 100-136 4-40 (260)
258 KOG2068|consensus 95.1 0.01 2.3E-07 52.6 1.5 80 9-88 78-164 (327)
259 KOG0125|consensus 95.0 0.018 3.8E-07 50.9 2.7 78 95-185 91-168 (376)
260 KOG4307|consensus 94.9 0.029 6.2E-07 54.4 4.0 120 7-127 310-461 (944)
261 KOG1996|consensus 94.8 0.079 1.7E-06 46.1 6.0 62 23-84 301-364 (378)
262 smart00362 RRM_2 RNA recogniti 94.7 0.011 2.4E-07 40.0 0.5 34 102-135 1-34 (72)
263 KOG0113|consensus 94.3 0.013 2.8E-07 51.0 0.2 62 101-169 102-163 (335)
264 KOG0107|consensus 94.3 0.022 4.8E-07 45.8 1.4 40 100-139 10-49 (195)
265 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.055 1.2E-06 44.6 3.7 73 5-77 4-83 (176)
266 PF06128 Shigella_OspC: Shigel 94.2 0.25 5.4E-06 41.7 7.4 89 256-347 180-278 (284)
267 KOG0226|consensus 94.1 0.035 7.6E-07 47.3 2.4 163 9-184 97-263 (290)
268 PLN03121 nucleic acid binding 94.1 0.031 6.7E-07 47.8 2.1 35 101-135 6-40 (243)
269 PF10309 DUF2414: Protein of u 94.0 0.4 8.6E-06 31.9 6.8 52 9-68 6-60 (62)
270 PF14259 RRM_6: RNA recognitio 93.9 0.029 6.4E-07 38.3 1.2 56 103-166 1-56 (70)
271 cd00590 RRM RRM (RNA recogniti 93.1 0.039 8.5E-07 37.4 0.8 34 102-135 1-34 (74)
272 COG0724 RNA-binding proteins ( 92.9 0.032 7E-07 49.0 0.3 59 100-165 115-173 (306)
273 smart00360 RRM RNA recognition 92.9 0.03 6.4E-07 37.6 0.0 54 105-165 1-54 (71)
274 KOG2135|consensus 92.6 0.05 1.1E-06 50.4 1.1 70 12-87 376-446 (526)
275 KOG0130|consensus 92.6 0.046 1E-06 42.0 0.7 61 98-165 70-130 (170)
276 PF15023 DUF4523: Protein of u 92.0 0.61 1.3E-05 36.4 6.1 74 5-85 83-160 (166)
277 KOG4285|consensus 91.9 0.55 1.2E-05 41.3 6.4 71 9-86 198-269 (350)
278 KOG2202|consensus 91.6 0.081 1.7E-06 45.3 1.1 60 24-84 84-145 (260)
279 KOG4207|consensus 90.0 0.093 2E-06 43.4 0.0 60 101-165 14-74 (256)
280 PF11929 DUF3447: Domain of un 89.9 0.74 1.6E-05 32.1 4.6 47 257-311 8-54 (76)
281 PF07576 BRAP2: BRCA1-associat 89.8 4 8.7E-05 30.7 8.7 65 10-76 15-81 (110)
282 KOG0108|consensus 88.5 0.14 3E-06 48.2 0.1 92 101-205 19-110 (435)
283 PF07292 NID: Nmi/IFP 35 domai 88.2 0.15 3.2E-06 36.6 0.0 70 53-122 1-74 (88)
284 KOG0533|consensus 88.2 0.22 4.7E-06 43.1 1.0 39 101-139 84-122 (243)
285 KOG0151|consensus 87.8 0.28 6E-06 48.0 1.6 62 101-166 175-236 (877)
286 KOG2416|consensus 87.2 0.37 8E-06 46.2 2.0 73 7-85 443-520 (718)
287 KOG2505|consensus 85.8 0.64 1.4E-05 43.8 2.8 48 249-297 424-471 (591)
288 PF03158 DUF249: Multigene fam 82.4 3 6.4E-05 34.3 4.9 47 291-344 145-191 (192)
289 KOG0116|consensus 82.1 0.77 1.7E-05 43.1 1.7 37 101-137 289-325 (419)
290 KOG2591|consensus 80.5 4.2 9E-05 39.0 5.8 66 8-80 175-245 (684)
291 KOG4676|consensus 79.7 0.29 6.4E-06 44.4 -1.8 74 9-86 152-225 (479)
292 KOG4660|consensus 77.7 2.9 6.2E-05 40.0 3.9 66 9-74 389-456 (549)
293 KOG4208|consensus 77.2 0.51 1.1E-05 39.2 -1.0 73 101-178 50-127 (214)
294 KOG0132|consensus 77.0 1.2 2.6E-05 44.2 1.3 37 100-136 421-457 (894)
295 KOG2253|consensus 76.9 1.4 3.1E-05 42.9 1.8 67 7-82 39-106 (668)
296 KOG0804|consensus 76.8 11 0.00025 35.3 7.3 67 8-76 74-142 (493)
297 KOG0115|consensus 75.3 2.6 5.7E-05 36.3 2.7 58 63-134 7-65 (275)
298 PF04847 Calcipressin: Calcipr 74.8 5.6 0.00012 33.0 4.5 59 22-86 9-70 (184)
299 PF11929 DUF3447: Domain of un 73.3 17 0.00037 25.1 6.1 48 290-345 7-54 (76)
300 KOG0415|consensus 66.5 2.7 5.9E-05 37.9 1.0 69 101-176 240-308 (479)
301 PF14111 DUF4283: Domain of un 63.8 11 0.00024 29.9 4.0 122 8-135 15-140 (153)
302 PF06128 Shigella_OspC: Shigel 63.6 17 0.00038 31.0 5.1 47 268-315 230-279 (284)
303 KOG3152|consensus 62.9 4.5 9.8E-05 34.9 1.6 30 100-129 74-103 (278)
304 KOG0111|consensus 62.2 1.5 3.3E-05 36.8 -1.3 37 99-135 9-45 (298)
305 PF11767 SET_assoc: Histone ly 58.5 44 0.00096 22.5 5.5 53 19-80 11-64 (66)
306 KOG4574|consensus 57.6 6.7 0.00015 39.7 2.0 71 10-86 300-373 (1007)
307 KOG4410|consensus 57.4 12 0.00027 32.8 3.3 48 8-61 330-378 (396)
308 KOG1855|consensus 57.2 8.8 0.00019 35.7 2.5 39 98-138 229-267 (484)
309 KOG4454|consensus 56.2 2.6 5.7E-05 35.5 -0.9 66 8-74 80-150 (267)
310 KOG0153|consensus 55.5 7.6 0.00017 35.1 1.8 35 101-135 229-263 (377)
311 PF03468 XS: XS domain; Inter 54.5 34 0.00075 26.0 5.0 47 20-69 29-76 (116)
312 PF15513 DUF4651: Domain of un 52.5 40 0.00086 22.4 4.3 18 23-40 9-26 (62)
313 smart00596 PRE_C2HC PRE_C2HC d 52.4 21 0.00046 24.2 3.1 62 23-86 2-64 (69)
314 KOG4335|consensus 52.3 15 0.00032 35.1 3.2 71 260-331 149-219 (558)
315 KOG2318|consensus 51.5 73 0.0016 31.2 7.6 71 6-76 172-295 (650)
316 smart00295 B41 Band 4.1 homolo 51.0 15 0.00034 30.6 3.0 26 148-173 174-199 (207)
317 KOG2891|consensus 50.4 10 0.00022 33.2 1.7 66 101-166 150-242 (445)
318 PF08777 RRM_3: RNA binding mo 49.7 7.6 0.00017 29.0 0.8 33 102-134 3-35 (105)
319 PF00373 FERM_M: FERM central 47.7 16 0.00034 27.7 2.3 25 149-173 94-118 (126)
320 PF08675 RNA_bind: RNA binding 44.2 10 0.00022 26.9 0.7 27 103-129 11-37 (87)
321 KOG4209|consensus 40.3 6.7 0.00015 33.9 -0.9 64 97-167 98-161 (231)
322 PF09707 Cas_Cas2CT1978: CRISP 38.1 64 0.0014 23.1 3.9 48 9-59 26-73 (86)
323 KOG4483|consensus 37.1 78 0.0017 29.5 5.2 54 9-69 392-446 (528)
324 PF10567 Nab6_mRNP_bdg: RNA-re 35.9 67 0.0015 28.6 4.5 58 7-64 14-78 (309)
325 COG0030 KsgA Dimethyladenosine 35.5 77 0.0017 27.9 4.9 52 10-77 97-148 (259)
326 KOG2891|consensus 35.1 36 0.00077 29.9 2.7 34 8-41 149-194 (445)
327 PF03880 DbpA: DbpA RNA bindin 34.8 36 0.00078 23.4 2.3 57 19-84 12-74 (74)
328 PF07530 PRE_C2HC: Associated 34.0 78 0.0017 21.5 3.7 62 23-86 2-64 (68)
329 KOG2193|consensus 33.1 2.4 5.2E-05 39.1 -4.8 74 7-84 79-154 (584)
330 KOG4661|consensus 32.9 28 0.0006 33.8 1.8 38 101-138 406-445 (940)
331 KOG3702|consensus 32.4 38 0.00082 33.5 2.7 125 10-134 513-641 (681)
332 PRK11558 putative ssRNA endonu 32.0 77 0.0017 23.2 3.6 49 9-60 28-76 (97)
333 COG5193 LHP1 La protein, small 31.8 27 0.00059 32.4 1.5 61 8-68 174-244 (438)
334 PF05189 RTC_insert: RNA 3'-te 31.2 1.1E+02 0.0024 22.5 4.5 49 10-58 12-65 (103)
335 KOG3836|consensus 30.5 13 0.00027 36.4 -0.8 41 278-319 418-458 (605)
336 KOG3836|consensus 25.7 16 0.00034 35.8 -1.1 48 296-344 403-450 (605)
337 KOG0156|consensus 25.2 1.1E+02 0.0023 29.9 4.4 60 11-79 35-97 (489)
338 KOG4008|consensus 23.4 76 0.0016 27.3 2.6 32 6-37 38-69 (261)
339 PTZ00338 dimethyladenosine tra 22.7 1.4E+02 0.0031 26.8 4.5 52 10-77 103-154 (294)
340 COG5584 Predicted small secret 20.8 2.1E+02 0.0045 20.9 4.0 31 15-45 29-59 (103)
341 KOG4365|consensus 20.6 25 0.00055 32.9 -0.8 75 9-84 4-79 (572)
342 PF11411 DNA_ligase_IV: DNA li 20.3 81 0.0018 18.4 1.5 16 18-33 19-34 (36)
343 COG1732 OpuBC Periplasmic glyc 20.3 96 0.0021 27.9 2.8 27 278-304 59-86 (300)
344 KOG4213|consensus 20.2 1.1E+02 0.0025 25.1 2.9 48 33-80 132-180 (205)
345 COG5353 Uncharacterized protei 20.2 4.6E+02 0.0099 20.9 6.6 56 6-61 85-153 (161)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.89 E-value=3.7e-23 Score=187.66 Aligned_cols=148 Identities=20% Similarity=0.287 Sum_probs=124.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++|+++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+|++ +++..+.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 3456899999999999999999999999999999999999999999999999999999999997 499999999999998
Q ss_pred CCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHH
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAM 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~ 163 (347)
+.+... .....++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.+ ..+.++|.
T Consensus 184 a~p~~~-------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~-----tg~~kG~aFV~--F~~~e~A~ 249 (346)
T TIGR01659 184 ARPGGE-------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL-----TGTPRGVAFVR--FNKREEAQ 249 (346)
T ss_pred cccccc-------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC-----CCccceEEEEE--ECCHHHHH
Confidence 865432 12346799999999999999999999999998777765542 34455555554 45577777
Q ss_pred HHH
Q psy630 164 SKY 166 (347)
Q Consensus 164 ~~y 166 (347)
++.
T Consensus 250 ~Ai 252 (346)
T TIGR01659 250 EAI 252 (346)
T ss_pred HHH
Confidence 663
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=9.6e-22 Score=187.59 Aligned_cols=154 Identities=15% Similarity=0.311 Sum_probs=122.7
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|||||||+++++++|+++|++||.|.+|+|++|+.||+++|||||+|.+.++|++|+.. |+..+.||.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 45678999999999999999999999999999999999999999999999999999999999985 99999999999987
Q ss_pred CCcccccchhh----hhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCH
Q psy630 84 SDSHNRMAENM----EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAK 159 (347)
Q Consensus 84 ~~~~~~~~~~~----~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~ 159 (347)
........... ...-...++||+||+..+++++|+++|+.||.+....+..++. .++.|+.+|..+. +.
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~-----tgksKGfGFVeFe--~~ 256 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----GRGHKGYGFIEYN--NL 256 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-----CCCcCCeEEEEEC--CH
Confidence 55432111000 0011236899999999999999999999999998777665432 2455666665543 45
Q ss_pred HHHHHH
Q psy630 160 SEAMSK 165 (347)
Q Consensus 160 ~eA~~~ 165 (347)
++|.++
T Consensus 257 e~A~kA 262 (612)
T TIGR01645 257 QSQSEA 262 (612)
T ss_pred HHHHHH
Confidence 666554
No 3
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.86 E-value=6.1e-22 Score=141.85 Aligned_cols=84 Identities=33% Similarity=0.742 Sum_probs=79.9
Q ss_pred hcccccccccCCcc--cccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy630 97 RFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVD 174 (347)
Q Consensus 97 ~f~~~~~~v~~l~~--~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~ 174 (347)
.|..+..+|++++. .++.+++++||++|+|+|+|+|+.++||++++++|+||+||.++++|++++||++||++++++.
T Consensus 4 ~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~~~l~ 83 (90)
T PTZ00458 4 LFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIVTELF 83 (90)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 48888889999887 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChh
Q psy630 175 AGWEDK 180 (347)
Q Consensus 175 ~~~~~~ 180 (347)
|+|+..
T Consensus 84 ~~w~~~ 89 (90)
T PTZ00458 84 PNWEKG 89 (90)
T ss_pred hccccC
Confidence 999864
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.85 E-value=1.4e-21 Score=180.78 Aligned_cols=146 Identities=21% Similarity=0.332 Sum_probs=121.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|++|+.. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 367899999999999999999999999999999999999999999999999999999999985 9999999999999886
Q ss_pred cccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 86 SHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 86 ~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
+... ....+++||+|||..+++++|..+|+.||.+....+..++. .+..|+.+|.. .-+.++|.++
T Consensus 82 ~~~~-------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~~~~~g~~fv~--f~~~~~A~~a 147 (352)
T TIGR01661 82 PSSD-------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV-----TGLSKGVGFIR--FDKRDEADRA 147 (352)
T ss_pred cccc-------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC-----CCCcCcEEEEE--ECCHHHHHHH
Confidence 6432 22356899999999999999999999999998766655432 22344444443 4467777766
Q ss_pred H
Q psy630 166 Y 166 (347)
Q Consensus 166 y 166 (347)
.
T Consensus 148 i 148 (352)
T TIGR01661 148 I 148 (352)
T ss_pred H
Confidence 3
No 5
>KOG4412|consensus
Probab=99.84 E-value=1.2e-21 Score=154.57 Aligned_cols=126 Identities=26% Similarity=0.411 Sum_probs=106.9
Q ss_pred cccccCCCccccCCCCCccceeeccc-----CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHH
Q psy630 221 DESQESGSKENEGQTKGWVNVSSMIN-----DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHW 295 (347)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~ 295 (347)
.++++.-....-.++-|...++..+. .++..|+.|++|||.|++.+..++++.|+...++++|..+..|+|||||
T Consensus 33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy 112 (226)
T KOG4412|consen 33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY 112 (226)
T ss_pred cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence 33444445555556666554444433 3677799999999999999999999988885699999999999999999
Q ss_pred HHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 296 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 296 A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|+..|+.+|+++||+ .|+.|+.+|..|.||||-|+..|.++++++|+..||
T Consensus 113 AagK~r~eIaqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a 163 (226)
T KOG4412|consen 113 AAGKGRLEIAQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA 163 (226)
T ss_pred hhcCChhhHHHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHHHhcCC
Confidence 999999999999999 799999999999999999999999999999999986
No 6
>KOG4412|consensus
Probab=99.83 E-value=7.1e-21 Score=150.31 Aligned_cols=99 Identities=29% Similarity=0.310 Sum_probs=90.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
++|.....|.|+||+|+..+..++.++|+. +|+.++.+|..|.||||-|+.-|.+.++++|+. .|+.+|.+|..|+||
T Consensus 98 dvna~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~Li~-~~a~~n~qDk~G~Tp 175 (226)
T KOG4412|consen 98 DVNATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS-QGAPLNTQDKYGFTP 175 (226)
T ss_pred CcceecCCCcceehhhhcCChhhHHHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHHHh-cCCCCCcccccCccH
Confidence 567778899999999998888889999999 789999999999999999999999999999998 699999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||.|..-||.++..+|+++||
T Consensus 176 L~~al~e~~~d~a~lLV~~gA 196 (226)
T KOG4412|consen 176 LHHALAEGHPDVAVLLVRAGA 196 (226)
T ss_pred HHHHHhccCchHHHHHHHhcc
Confidence 999988889999999999987
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.83 E-value=1.3e-20 Score=180.32 Aligned_cols=155 Identities=23% Similarity=0.283 Sum_probs=124.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
.....++|||+|||+.+++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|+.+++..+.|++|.|..
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccccchh----hh-hhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCC
Q psy630 84 SDSHNRMAEN----ME-DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMA 158 (347)
Q Consensus 84 ~~~~~~~~~~----~~-~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~ 158 (347)
+......... .. ..-...++||+|||..+++++|.++|+.||.|....+..+.. .|+.|+.||.. ..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~-----~g~~~g~afV~--f~~ 237 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE-----TGRSKGFGFIQ--FHD 237 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCccceEEEEE--ECC
Confidence 6543322111 00 011246899999999999999999999999998776665432 24555556655 445
Q ss_pred HHHHHHH
Q psy630 159 KSEAMSK 165 (347)
Q Consensus 159 ~~eA~~~ 165 (347)
.++|..+
T Consensus 238 ~e~A~~A 244 (457)
T TIGR01622 238 AEEAKEA 244 (457)
T ss_pred HHHHHHH
Confidence 6777666
No 8
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.82 E-value=1.2e-20 Score=135.10 Aligned_cols=82 Identities=39% Similarity=0.752 Sum_probs=79.2
Q ss_pred hhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhc
Q psy630 96 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDA 175 (347)
Q Consensus 96 ~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~ 175 (347)
..|..+..+|+.++..++.+++++||++|+|+++|+|+.++||+++++++.||+||.++++|+++|||+.||++++++.|
T Consensus 3 ~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~~ 82 (85)
T cd00435 3 EEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELIA 82 (85)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy630 176 GW 177 (347)
Q Consensus 176 ~~ 177 (347)
+|
T Consensus 83 ~~ 84 (85)
T cd00435 83 KY 84 (85)
T ss_pred cc
Confidence 87
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.81 E-value=5e-20 Score=180.44 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=117.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCccc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHN 88 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~~ 88 (347)
+|||||||+++|+++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+|+.. ++..+.|+.|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999999999999999999999999999985 9999999999998875432
Q ss_pred ccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 89 RMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 89 ~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.. ......++||+|||.++++++|.++|+.||.|....+..+.. |+.|+.||.. ..+.++|.++
T Consensus 82 ~~-----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~------g~skg~afV~--F~~~e~A~~A 145 (562)
T TIGR01628 82 SL-----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDEN------GKSRGYGFVH--FEKEESAKAA 145 (562)
T ss_pred cc-----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCC------CCcccEEEEE--ECCHHHHHHH
Confidence 21 122345799999999999999999999999998766655432 3344444444 3345555554
No 10
>KOG0131|consensus
Probab=99.80 E-value=9.5e-20 Score=143.52 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=109.0
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
.+.++..+||||||+..++++.|.++|-+.|+|..+++++|+.+...+||||++|.++++|+-|++. |...+.||+|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 3456778999999999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred cCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccce
Q psy630 82 QPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATV 129 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~ 129 (347)
..+..... ..-..+++||+||.+.+++..|.+.|+.||++..
T Consensus 84 ~kas~~~~------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 84 NKASAHQK------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS 125 (203)
T ss_pred Eecccccc------cccccccccccccCcchhHHHHHHHHHhcccccc
Confidence 98873322 1234489999999999999999999999999865
No 11
>KOG0145|consensus
Probab=99.79 E-value=1.5e-19 Score=149.84 Aligned_cols=146 Identities=20% Similarity=0.354 Sum_probs=124.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..++|.|.-||..+|+++++.+|...|+|.+|++++|+.+|.|-||+||.|-++++|++|+.. ||..+..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 446899999999999999999999999999999999999999999999999999999999985 9999999999999998
Q ss_pred cccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 86 SHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 86 ~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
+... ....+++||.+||..++..++.++|++||.|..-++..+.- .|-+|+.+|..+ =.+.||.++
T Consensus 120 PSs~-------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv-----tg~srGVgFiRF--DKr~EAe~A 185 (360)
T KOG0145|consen 120 PSSD-------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV-----TGLSRGVGFIRF--DKRIEAEEA 185 (360)
T ss_pred CChh-------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc-----cceecceeEEEe--cchhHHHHH
Confidence 7543 45678999999999999999999999999998777766642 344555555443 235667666
Q ss_pred H
Q psy630 166 Y 166 (347)
Q Consensus 166 y 166 (347)
.
T Consensus 186 I 186 (360)
T KOG0145|consen 186 I 186 (360)
T ss_pred H
Confidence 3
No 12
>KOG0817|consensus
Probab=99.79 E-value=1e-19 Score=140.95 Aligned_cols=87 Identities=44% Similarity=0.768 Sum_probs=83.1
Q ss_pred hhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy630 95 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVD 174 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~ 174 (347)
...|..+.-.|++|+..++.++++.||++|+|+++|+|++++||+++++||+||+||+.+++|+.++||++||+++.+|.
T Consensus 6 ~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Yv~~~~~l~ 85 (142)
T KOG0817|consen 6 EAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAYVEKVEELI 85 (142)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 45688888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhh
Q psy630 175 AGWEDKE 181 (347)
Q Consensus 175 ~~~~~~~ 181 (347)
+.|....
T Consensus 86 ~~~~~~~ 92 (142)
T KOG0817|consen 86 PKYGAEA 92 (142)
T ss_pred HHhhccc
Confidence 9999874
No 13
>KOG0148|consensus
Probab=99.78 E-value=3.7e-19 Score=148.46 Aligned_cols=128 Identities=22% Similarity=0.428 Sum_probs=112.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
-.+||+.|.+.++.+.|++.|.+||+|.+++|++|..|++|+||+||-|-+.++|+.||.. ||.=|.+|.|+-.|+..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3799999999999999999999999999999999999999999999999999999999985 999999999999998776
Q ss_pred cccch----hhhhhcc-----cccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 88 NRMAE----NMEDRFN-----QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 88 ~~~~~----~~~~~f~-----~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
..... ..++.|+ .+++||+|++..++++.+++.|+.||+|.+.++..++
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence 53211 1122232 3789999999999999999999999999988776553
No 14
>KOG0144|consensus
Probab=99.77 E-value=3.3e-19 Score=157.62 Aligned_cols=125 Identities=22% Similarity=0.416 Sum_probs=108.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc--CCCccCC--ccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEG--SRLSI 81 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g--~~l~v 81 (347)
.+.-++|||.+|..++|.+|+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.. |-+++.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4455899999999999999999999999999999999999999999999999999999999985 8888887 46677
Q ss_pred cCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 82 QPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
++++...++. ....++||+.|+...++.+++++|++||.|....+..+.
T Consensus 112 k~Ad~E~er~------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~ 160 (510)
T KOG0144|consen 112 KYADGERERI------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP 160 (510)
T ss_pred cccchhhhcc------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence 7887655432 345678999999999999999999999999865555443
No 15
>KOG0117|consensus
Probab=99.76 E-value=7.8e-19 Score=155.99 Aligned_cols=169 Identities=18% Similarity=0.311 Sum_probs=125.3
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc-CCccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL-EGSRLSI 81 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~-~g~~l~v 81 (347)
.+...+-||||.||.++.|++|.-+|++.|+|-++++|+|+.+|.+||||||+|.+.+.|+.|++. |.+.| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 345678999999999999999999999999999999999999999999999999999999999986 77766 6999998
Q ss_pred cCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCC-------------------------
Q psy630 82 QPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK------------------------- 136 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~------------------------- 136 (347)
+.+.. .+++||+|+|...+.+++++-+...+.-.+--+..+.
T Consensus 159 c~Sva-------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 159 CVSVA-------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred EEeee-------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 86644 3568999999999999999998887665432222222
Q ss_pred ----CCccchhHHHHHHHHHHcCCCCHHHHHHHH-HHHHHHhhccCChhhhhhh
Q psy630 137 ----PSWYNMEAKSKYNAWNSLGQMAKSEAMSKY-IALLKEVDAGWEDKEQEEI 185 (347)
Q Consensus 137 ----p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y-i~~~~~l~~~~~~~~~~~~ 185 (347)
|+.+.+.|..-...|..-+.-..+|+|.+. +.+|++|+.+..++.++..
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~ 279 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKL 279 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHH
Confidence 233444444444455554444455555554 5555555555555544443
No 16
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.76 E-value=2.2e-19 Score=130.41 Aligned_cols=84 Identities=39% Similarity=0.816 Sum_probs=75.5
Q ss_pred hhhcccccccccCCcc--cccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy630 95 EDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKE 172 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~~--~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~ 172 (347)
+..|..+..+|++++. .++.++.+.||++|+|+++|+|..++|+++++.++.||+||.++++||++|||+.||+++++
T Consensus 2 e~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~ 81 (87)
T PF00887_consen 2 EEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIELVEE 81 (87)
T ss_dssp HHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4568888999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC
Q psy630 173 VDAGWE 178 (347)
Q Consensus 173 l~~~~~ 178 (347)
+.++|.
T Consensus 82 ~~~~~~ 87 (87)
T PF00887_consen 82 LIPKYE 87 (87)
T ss_dssp HHHHH-
T ss_pred HHHhcC
Confidence 998873
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=4.6e-18 Score=157.34 Aligned_cols=171 Identities=20% Similarity=0.357 Sum_probs=127.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC--ccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG--SRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~v~~ 83 (347)
..++|||+|||+++++++|+++|++||.|..++++.+..++.++|||||+|.+.++|..|+.. ++..+.| +++.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456899999999999999999999999999999999988899999999999999999999975 8888877 4566766
Q ss_pred CCcccccch--------------hhh------------------------------------------------------
Q psy630 84 SDSHNRMAE--------------NME------------------------------------------------------ 95 (347)
Q Consensus 84 ~~~~~~~~~--------------~~~------------------------------------------------------ 95 (347)
+........ ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 543220000 000
Q ss_pred --h---------------hcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCC
Q psy630 96 --D---------------RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMA 158 (347)
Q Consensus 96 --~---------------~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~ 158 (347)
. .-...++||+|||..+++++|.++|+.||.|....+..++. .++.|+.|+.. ..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~-----t~~skG~aFV~--F~~ 320 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT-----TNQCKGYGFVS--MTN 320 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC-----CCCccceEEEE--ECC
Confidence 0 00012599999999999999999999999999888776542 45666666665 566
Q ss_pred HHHHHHHHHHHHHHhhccCChhhhhhhhcccc
Q psy630 159 KSEAMSKYIALLKEVDAGWEDKEQEEINWDWK 190 (347)
Q Consensus 159 ~~eA~~~yi~~~~~l~~~~~~~~~~~~~~~~~ 190 (347)
.++|+++ ++.|...+... +.+..+|+
T Consensus 321 ~~~A~~A----i~~lnG~~~~g--r~i~V~~~ 346 (352)
T TIGR01661 321 YDEAAMA----ILSLNGYTLGN--RVLQVSFK 346 (352)
T ss_pred HHHHHHH----HHHhCCCEECC--eEEEEEEc
Confidence 8888765 55555554443 23444444
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=1.1e-17 Score=159.69 Aligned_cols=109 Identities=22% Similarity=0.396 Sum_probs=96.8
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC-Ccccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-GSRLSIQ 82 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~v~ 82 (347)
+...++|||+|||+++++++|+++|++||.|.+++|++| .+|+++|||||+|.+.++|++|++. |+..+. |+.+.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 455689999999999999999999999999999999999 6899999999999999999999986 887774 7877776
Q ss_pred CCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhcccc
Q psy630 83 PSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQA 127 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v 127 (347)
.+. ...++||+|||..+++++|++.|+.++..
T Consensus 134 ~S~-------------~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 134 ISV-------------DNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccc-------------cCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 543 24579999999999999999999998753
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.73 E-value=7.5e-18 Score=165.11 Aligned_cols=152 Identities=20% Similarity=0.385 Sum_probs=124.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC----Ccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE----GSRLS 80 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~l~ 80 (347)
...++|||+|||+++|+++|+++|++||.|.++.++++. +|.++|||||+|.+.++|.+|++. ++..+. |+.+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 345789999999999999999999999999999999986 699999999999999999999985 999999 99999
Q ss_pred ccCCCcccccchhhhh-----------hcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHH
Q psy630 81 IQPSDSHNRMAENMED-----------RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYN 149 (347)
Q Consensus 81 v~~~~~~~~~~~~~~~-----------~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~ 149 (347)
|.++..+..+...... .....++||+||+..+++++|+++|+.||.|+...+..+. .|+.|+.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~------~g~~~g~ 328 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE------KGVSRGF 328 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC------CCCcCCe
Confidence 9988776654322222 2334679999999999999999999999999987776653 3344544
Q ss_pred HHHHcCCCCHHHHHHHH
Q psy630 150 AWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 150 aw~~~~~~~~~eA~~~y 166 (347)
+|.. ..+.++|.++.
T Consensus 329 gfV~--f~~~~~A~~A~ 343 (562)
T TIGR01628 329 GFVC--FSNPEEANRAV 343 (562)
T ss_pred EEEE--eCCHHHHHHHH
Confidence 4443 44677777774
No 20
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.73 E-value=3.6e-18 Score=113.62 Aligned_cols=82 Identities=37% Similarity=0.667 Sum_probs=76.9
Q ss_pred hhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhc
Q psy630 96 DRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDA 175 (347)
Q Consensus 96 ~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~ 175 (347)
..|.++..-|..|+..++.++|+++|++|+|.++|+....+||+|+++|+.||+||..+++.|.++|.++||.+|++|..
T Consensus 4 ~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYialVeeLka 83 (87)
T COG4281 4 TRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALVEELKA 83 (87)
T ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHHHHHHHh
Confidence 45777777899999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cC
Q psy630 176 GW 177 (347)
Q Consensus 176 ~~ 177 (347)
++
T Consensus 84 k~ 85 (87)
T COG4281 84 KY 85 (87)
T ss_pred hc
Confidence 54
No 21
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.72 E-value=3.2e-17 Score=134.94 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=88.5
Q ss_pred CcccCCCCCcHHHHHHcCChHH---HHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCC
Q psy630 248 ESQLDDNEKNIYEWAKEGKLDM---LVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 323 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~~~~---~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g 323 (347)
.+..+..|+|+||+|+..+... ++++|+. .|+++|.+| ..|.||||+|+.+++.+++++|+.+.|++++.+|..|
T Consensus 50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g 128 (166)
T PHA02743 50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQH 128 (166)
T ss_pred hhccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCC
Confidence 4556788999999999876643 3678887 799999998 5899999999999999999999943699999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 324 DYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 324 ~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.||||+|+..++.+++++|+++||
T Consensus 129 ~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 129 ETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999987
No 22
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=4.7e-17 Score=129.68 Aligned_cols=83 Identities=31% Similarity=0.715 Sum_probs=77.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..+.|+.++.|++++|||||+|.+.++|+.|++. ++..+.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4467899999999999999999999999999999999999999999999999999999999984 999999999999988
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.++.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 6644
No 23
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.71 E-value=7.7e-17 Score=118.48 Aligned_cols=83 Identities=31% Similarity=0.531 Sum_probs=74.5
Q ss_pred HHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHH
Q psy630 259 YEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDL 338 (347)
Q Consensus 259 l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~ 338 (347)
||.|+..+...++++|.. .+.+++. |.||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.++
T Consensus 1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence 567777777778888888 6777766 8999999999999999999999 799999999999999999999999999
Q ss_pred HHHHHhCCC
Q psy630 339 IEYLVNSGS 347 (347)
Q Consensus 339 v~~Ll~~GA 347 (347)
+++|+++|+
T Consensus 75 ~~~Ll~~g~ 83 (89)
T PF12796_consen 75 VKLLLEHGA 83 (89)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHcCC
Confidence 999999986
No 24
>KOG0149|consensus
Probab=99.70 E-value=3.9e-17 Score=134.27 Aligned_cols=80 Identities=36% Similarity=0.759 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
..++||||+|+|.++.+.|+++|++||+|++..|+.|+.||+|+||+||+|++.++|.+|++....+|+||+..+..+.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 44699999999999999999999999999999999999999999999999999999999999977889999988887654
No 25
>KOG0509|consensus
Probab=99.69 E-value=6.6e-17 Score=150.68 Aligned_cols=99 Identities=28% Similarity=0.480 Sum_probs=68.1
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+.+..|.+|.++||||+.++...++++|+. +|+++|..+ .-|.|||||||.+||..+|.+|++ +|||++.+|.+|.|
T Consensus 70 ~v~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq-hGAdpt~~D~~G~~ 147 (600)
T KOG0509|consen 70 SVNNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ-HGADPTLKDKQGLT 147 (600)
T ss_pred CCCCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH-cCCCCceecCCCCc
Confidence 455566667777777777777667777666 677777665 456677777777777777777776 57777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|++.|+..+|.|||.+||
T Consensus 148 ~lHla~~~~~~~~vayll~~~~ 169 (600)
T KOG0509|consen 148 PLHLAAQFGHTALVAYLLSKGA 169 (600)
T ss_pred HHHHHHHhCchHHHHHHHHhcc
Confidence 7777777777777777766653
No 26
>KOG0508|consensus
Probab=99.68 E-value=3.6e-17 Score=146.87 Aligned_cols=101 Identities=24% Similarity=0.333 Sum_probs=95.5
Q ss_pred ccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 245 INDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 245 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
..++|.......|||.+||..++.+++++|.+ ++++++..|..|.|+||+||.+||.+|+++|++ .|||+|.++..|+
T Consensus 107 ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGN 184 (615)
T KOG0508|consen 107 GASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGN 184 (615)
T ss_pred cCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCc
Confidence 34577777788899999999999999999998 899999999999999999999999999999999 6999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|+||.|+..|+.+++++||.+||
T Consensus 185 TALH~caEsG~vdivq~Ll~~ga 207 (615)
T KOG0508|consen 185 TALHDCAESGSVDIVQLLLKHGA 207 (615)
T ss_pred hHHHhhhhcccHHHHHHHHhCCc
Confidence 99999999999999999999986
No 27
>KOG0512|consensus
Probab=99.68 E-value=1e-16 Score=125.94 Aligned_cols=96 Identities=23% Similarity=0.245 Sum_probs=84.0
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
-.|..|.++.|+||.|+..++..+++.|+. .|++++.+...||||||-||.+.+.+++.+||+ +|+|||++....+||
T Consensus 89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLq-hgaDVnA~t~g~ltp 166 (228)
T KOG0512|consen 89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQ-HGADVNAQTKGLLTP 166 (228)
T ss_pred cccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchhHHHHHHh-ccCcccccccccchh
Confidence 368889999999999999999999988888 799999999999999999999999999999998 799999999999999
Q ss_pred HHHHHHcCCHH-HHHHHHh
Q psy630 327 LDYAKAIEHTD-LIEYLVN 344 (347)
Q Consensus 327 Lh~A~~~~~~~-~v~~Ll~ 344 (347)
||+||.+.+.. .+.+||.
T Consensus 167 Lhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 167 LHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred hHHhhcccchHHHHHHHhh
Confidence 99999877644 4556654
No 28
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.68 E-value=1e-16 Score=130.44 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=86.8
Q ss_pred ccCCCCCcHHHHHHcCChH---HHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 250 QLDDNEKNIYEWAKEGKLD---MLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~---~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
..+..|.|+||+|+..+.. +++++|+. .|++++.++. .|.||||+|+..++.+++++|+.+.|++++.+|..|.|
T Consensus 50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t 128 (154)
T PHA02736 50 EYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT 128 (154)
T ss_pred HhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence 3467899999999887764 45677777 7999999984 99999999999999999999997359999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 129 pL~~A~~~~~~~i~~~Ll~~ga 150 (154)
T PHA02736 129 PYYVACERHDAKMMNILRAKGA 150 (154)
T ss_pred HHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999997
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.68 E-value=2.7e-16 Score=150.69 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=99.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCccccccCC
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLSIQPS 84 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~v~~~ 84 (347)
.+.|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|+.|+.. ++..+.|++|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999999853 57999999999999999973 789999999999988
Q ss_pred Cccc-ccchhh----hhhcccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 85 DSHN-RMAENM----EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 85 ~~~~-~~~~~~----~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
..+. .+.... ...-....++|.||+..+++++|.++|+.||.|....+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~ 131 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK 131 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence 6542 111100 00011246899999999999999999999999987766443
No 30
>PHA02791 ankyrin-like protein; Provisional
Probab=99.67 E-value=3.3e-16 Score=139.04 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=84.1
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC-cHHHHHHH
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-YGLDYAKA 332 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~-TpLh~A~~ 332 (347)
.+.||||+|+..+..+++++|+. .|++++.+|..|+||||+||..|+.+++++|+. +|++++.++..|+ ||||+|+.
T Consensus 60 d~~TpLh~Aa~~g~~eiV~lLL~-~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~ 137 (284)
T PHA02791 60 ENEFPLHQAATLEDTKIVKILLF-SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVM 137 (284)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCcHHHHHHHH
Confidence 46899999999889999999988 799999999999999999999999999999998 7999999998885 89999999
Q ss_pred cCCHHHHHHHHhCC
Q psy630 333 IEHTDLIEYLVNSG 346 (347)
Q Consensus 333 ~~~~~~v~~Ll~~G 346 (347)
.|+.++|++|+++|
T Consensus 138 ~g~~eivk~LL~~~ 151 (284)
T PHA02791 138 LNDVSIVSYFLSEI 151 (284)
T ss_pred cCCHHHHHHHHhcC
Confidence 99999999999876
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.67 E-value=1.6e-16 Score=154.26 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=117.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.+.|..|+.. ++..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999999999999999999999999999999999974 999999999999877
Q ss_pred Ccccccch---------------hhhh------hcccccccccCCccc--c--------cchhhHHHHhhccccceeccc
Q psy630 85 DSHNRMAE---------------NMED------RFNQACDYLPSLVKK--L--------DSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 85 ~~~~~~~~---------------~~~~------~f~~~~~~v~~l~~~--~--------~~e~l~~~f~~fg~v~~g~~~ 133 (347)
........ .... .....++++.|+... + ..++|.++|+.||.|....+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54221100 0000 012345677777532 1 125789999999999976665
Q ss_pred CCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccCCh
Q psy630 134 IDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWED 179 (347)
Q Consensus 134 ~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~~~~~ 179 (347)
.+.+..- .+..++.+| +...+.++|.++ +..|...|..
T Consensus 453 ~~~~~~~--~~~~~G~~f--V~F~~~e~A~~A----~~~lnGr~~~ 490 (509)
T TIGR01642 453 RPNGDRN--STPGVGKVF--LEYADVRSAEKA----MEGMNGRKFN 490 (509)
T ss_pred ccCcCCC--cCCCcceEE--EEECCHHHHHHH----HHHcCCCEEC
Confidence 4322111 111223333 345567888777 4455554443
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.67 E-value=1.2e-16 Score=155.19 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=107.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhcc------------CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEY------------GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSH 72 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~ 72 (347)
....++|||||||+.+|+++|+++|.++ +.|..+.+ +..+|||||+|.+.++|..|+.+++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 4567899999999999999999999875 23333333 45679999999999999999988999
Q ss_pred ccCCccccccCCCcccccc--------hh--------------hhhhcccccccccCCcccccchhhHHHHhhcccccee
Q psy630 73 VLEGSRLSIQPSDSHNRMA--------EN--------------MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVG 130 (347)
Q Consensus 73 ~~~g~~l~v~~~~~~~~~~--------~~--------------~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g 130 (347)
.+.|+.|.|.+........ .. ....-...+|||+|||..+++++|.++|+.||.+...
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 9999999997543322000 00 0001123589999999999999999999999998866
Q ss_pred cccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 131 QCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 131 ~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.+..+.. .|..|+.||..+ .+.++|..+
T Consensus 326 ~~~~~~~-----~g~~~g~afv~f--~~~~~a~~A 353 (509)
T TIGR01642 326 NLIKDIA-----TGLSKGYAFCEY--KDPSVTDVA 353 (509)
T ss_pred EEEecCC-----CCCcCeEEEEEE--CCHHHHHHH
Confidence 5544321 344555566554 445566555
No 33
>PHA02741 hypothetical protein; Provisional
Probab=99.67 E-value=3.7e-16 Score=129.08 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=89.6
Q ss_pred CCcccCCCCCcHHHHHHcCCh----HHHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 247 DESQLDDNEKNIYEWAKEGKL----DMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~----~~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
+.+..+..|.|+||+|+..+. ..++++|.. .++++|.++. .|+||||+|+..++.+++++||...|++++.+|.
T Consensus 52 ~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~ 130 (169)
T PHA02741 52 ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA 130 (169)
T ss_pred hhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence 456677889999999998776 467888888 7999999985 9999999999999999999999635999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.|+||||+|+..++.+++++|++.+|
T Consensus 131 ~g~tpL~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 131 DNKSPFELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 34
>KOG0195|consensus
Probab=99.66 E-value=1.9e-16 Score=134.17 Aligned_cols=99 Identities=27% Similarity=0.357 Sum_probs=93.7
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
|.|.-|+-|.++||+|+.+++..++++|+. .|+.+|..+....||||+|+.+||-++|+.||+ ..+|+|+.+..|+||
T Consensus 26 dln~gddhgfsplhwaakegh~aivemll~-rgarvn~tnmgddtplhlaaahghrdivqkll~-~kadvnavnehgntp 103 (448)
T KOG0195|consen 26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTP 103 (448)
T ss_pred ccccccccCcchhhhhhhcccHHHHHHHHh-cccccccccCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCc
Confidence 456667889999999999999999999999 899999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||||.-|...+++-|+..||
T Consensus 104 lhyacfwgydqiaedli~~ga 124 (448)
T KOG0195|consen 104 LHYACFWGYDQIAEDLISCGA 124 (448)
T ss_pred hhhhhhhcHHHHHHHHHhccc
Confidence 999999999999999999997
No 35
>PHA02741 hypothetical protein; Provisional
Probab=99.65 E-value=7.2e-16 Score=127.38 Aligned_cols=98 Identities=27% Similarity=0.467 Sum_probs=85.5
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhc-----CCCCccccCCCCchHHHHHHHcCC----HHHHHHHHhhcCCCcccc
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKL-----KDFNINQLDENGLNCLHWACDRGH----LKVVQHLIEKCGADVNVT 319 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~-----~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~ga~i~~~ 319 (347)
+..+..|.++||+|+..+..+++++|... .+++++.+|..|+||||+|+..|+ .+++++|+. +|+++|.+
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~~ 93 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINAQ 93 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCCC
Confidence 34567899999999988888888876431 367899999999999999999999 588999999 79999999
Q ss_pred CC-CCCcHHHHHHHcCCHHHHHHHHh-CCC
Q psy630 320 DS-DGDYGLDYAKAIEHTDLIEYLVN-SGS 347 (347)
Q Consensus 320 d~-~g~TpLh~A~~~~~~~~v~~Ll~-~GA 347 (347)
+. .|+||||+|+..++.+++++|+. .|+
T Consensus 94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~ 123 (169)
T PHA02741 94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGI 123 (169)
T ss_pred CcCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 86 89999999999999999999997 464
No 36
>KOG0124|consensus
Probab=99.65 E-value=8.6e-17 Score=139.55 Aligned_cols=123 Identities=18% Similarity=0.446 Sum_probs=108.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
+++||||.+.+...++.|+..|..||+|.+|.+..|+.|++.+|||||+|+-++.|+.|++. |+..++||.|+|.+.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999996 99999999999998766
Q ss_pred ccccc------hhhhhhcccccccccCCcccccchhhHHHHhhccccceecc
Q psy630 87 HNRMA------ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 132 (347)
Q Consensus 87 ~~~~~------~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~ 132 (347)
...-. ++....| .++||..+.+++++++++..|..||.+.....
T Consensus 193 mpQAQpiID~vqeeAk~f--nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L 242 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKF--NRIYVASVHPDLSETDIKSVFEAFGEIVKCQL 242 (544)
T ss_pred CcccchHHHHHHHHHHhh--heEEeeecCCCccHHHHHHHHHhhcceeeEEe
Confidence 44321 2222334 57899999999999999999999999984333
No 37
>KOG0512|consensus
Probab=99.65 E-value=3.6e-16 Score=122.92 Aligned_cols=89 Identities=25% Similarity=0.330 Sum_probs=79.8
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCH
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 336 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~ 336 (347)
.++-+|..+.+..+..+|.. ..-.+|.+|.+|.||||-|+.+||++||..|+. .||+++++...||||||.||.-++.
T Consensus 66 l~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~ 143 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNF 143 (228)
T ss_pred HHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccch
Confidence 44555666777777777766 677799999999999999999999999999998 7999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q psy630 337 DLIEYLVNSGS 347 (347)
Q Consensus 337 ~~v~~Ll~~GA 347 (347)
+++-.||++||
T Consensus 144 ~va~~LLqhga 154 (228)
T KOG0512|consen 144 EVAGRLLQHGA 154 (228)
T ss_pred hHHHHHHhccC
Confidence 99999999997
No 38
>PHA02791 ankyrin-like protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=135.57 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=87.8
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCc-hHHHHHHHcCCHHHHHHHHhhcCCCccccC-CCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGL-NCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDG 323 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~-tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d-~~g 323 (347)
.+.+..+..|.|+||+|+..+..+++++|+. .+++++.++..|+ ||||+|+..|+.+++++||+ .+.+. .| ..|
T Consensus 85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~-~~~~~--~d~~~g 160 (284)
T PHA02791 85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPST--FDLAIL 160 (284)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHh-cCCcc--cccccC
Confidence 4577788999999999999999999999999 8999999998885 99999999999999999998 56543 23 358
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 324 DYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 324 ~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.||||+|+..|+.+++++||++||
T Consensus 161 ~TpLh~Aa~~g~~eiv~lLL~~gA 184 (284)
T PHA02791 161 LSCIHITIKNGHVDMMILLLDYMT 184 (284)
T ss_pred ccHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999999999999999999997
No 39
>KOG0127|consensus
Probab=99.64 E-value=4.9e-16 Score=141.43 Aligned_cols=126 Identities=24% Similarity=0.406 Sum_probs=108.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
.||||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||+|.-.+++++|+.. ++..|.|+.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999987 999999999999987664
Q ss_pred cccc-----------------hhhhh--hcccccccccCCcccccchhhHHHHhhccccceecccC
Q psy630 88 NRMA-----------------ENMED--RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 134 (347)
Q Consensus 88 ~~~~-----------------~~~~~--~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~ 134 (347)
.+.. .+... ......+.|+|||..+.+.+|..+|+.||.|....++.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~ 151 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPR 151 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEccc
Confidence 4321 00111 11246789999999999999999999999998766664
No 40
>KOG4214|consensus
Probab=99.64 E-value=5.6e-16 Score=109.05 Aligned_cols=82 Identities=29% Similarity=0.483 Sum_probs=74.0
Q ss_pred HHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q psy630 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY 341 (347)
Q Consensus 262 a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~ 341 (347)
...|..+++.+.... +.++|..- .|++|||||+..|.++++.+|+. .||+|+.+|..|-|||..|+..||.+||++
T Consensus 10 vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~cVkl 85 (117)
T KOG4214|consen 10 VKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRDCVKL 85 (117)
T ss_pred hccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHHHHHH
Confidence 345667777777776 78887764 89999999999999999999999 699999999999999999999999999999
Q ss_pred HHhCCC
Q psy630 342 LVNSGS 347 (347)
Q Consensus 342 Ll~~GA 347 (347)
||++||
T Consensus 86 LL~~GA 91 (117)
T KOG4214|consen 86 LLQNGA 91 (117)
T ss_pred HHHcCc
Confidence 999997
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.63 E-value=1e-15 Score=146.70 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=107.9
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 7 QLNKIFVGNLPW-TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 7 ~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
..++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|..|+.. |+..+.|++|.|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 557999999998 69999999999999999999999863 59999999999999999985 999999999999876
Q ss_pred Ccccccc-----------------hhhhhh-------------cccccccccCCcccccchhhHHHHhhccc--cceecc
Q psy630 85 DSHNRMA-----------------ENMEDR-------------FNQACDYLPSLVKKLDSSTLLKFYALYKQ--ATVGQC 132 (347)
Q Consensus 85 ~~~~~~~-----------------~~~~~~-------------f~~~~~~v~~l~~~~~~e~l~~~f~~fg~--v~~g~~ 132 (347)
....... ...... ....++||+|||..+++++|+++|+.||. ++...+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 4321100 000000 12357999999999999999999999998 443333
Q ss_pred cCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 133 NIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 133 ~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...+.+ .+..|+ ++..+.++|.++.
T Consensus 429 ~~~~~~-------~~~~gf--VeF~~~e~A~~Al 453 (481)
T TIGR01649 429 FPKDNE-------RSKMGL--LEWESVEDAVEAL 453 (481)
T ss_pred ecCCCC-------cceeEE--EEcCCHHHHHHHH
Confidence 222211 122233 3345677777763
No 42
>KOG0127|consensus
Probab=99.63 E-value=3.1e-16 Score=142.72 Aligned_cols=153 Identities=18% Similarity=0.328 Sum_probs=120.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
-+|.|+|||+.+...+|+.+|+.||.|..|.|++.+. |+-+|||||.|....+|..|++. |++.|.||+|.|.||-++
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 4699999999999999999999999999999998776 55569999999999999999996 999999999999987653
Q ss_pred cccc------------------------------------------hhhhh-----------------------------
Q psy630 88 NRMA------------------------------------------ENMED----------------------------- 96 (347)
Q Consensus 88 ~~~~------------------------------------------~~~~~----------------------------- 96 (347)
.... +..+.
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 3100 00000
Q ss_pred ------------hcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHH
Q psy630 97 ------------RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMS 164 (347)
Q Consensus 97 ------------~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~ 164 (347)
.-...++||+|||.++++++|.+.|+.||.+....+-..+. .+++|+-||..+.. +.|.+
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~-----T~~skGtAFv~Fkt---~~~~~ 348 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD-----TGHSKGTAFVKFKT---QIAAQ 348 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC-----CCCcccceEEEecc---HHHHH
Confidence 00015789999999999999999999999998877766543 77888888886543 33334
Q ss_pred HHHHHH
Q psy630 165 KYIALL 170 (347)
Q Consensus 165 ~yi~~~ 170 (347)
..|+.+
T Consensus 349 ~ci~~A 354 (678)
T KOG0127|consen 349 NCIEAA 354 (678)
T ss_pred HHHHhc
Confidence 444443
No 43
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.63 E-value=1.6e-15 Score=143.49 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=79.0
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCC-C
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG-D 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g-~ 324 (347)
.+++..+..|.||||+|+..+..+++++|+. .+++++.+|..|.||||+|+..|+.+++++|++ .|++++..+..| .
T Consensus 126 ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~ 203 (413)
T PHA02875 126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCV 203 (413)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCc
Confidence 3566677778888888887777777777777 678888888888888888888888888888887 688888877766 4
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||+|+..|+.+++++|+++||
T Consensus 204 t~l~~A~~~~~~~iv~~Ll~~ga 226 (413)
T PHA02875 204 AALCYAIENNKIDIVRLFIKRGA 226 (413)
T ss_pred hHHHHHHHcCCHHHHHHHHHCCc
Confidence 77888888888888888888876
No 44
>PHA02795 ankyrin-like protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=139.94 Aligned_cols=92 Identities=28% Similarity=0.222 Sum_probs=86.9
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHc
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 333 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~ 333 (347)
.+.+++|.|..++..+++++|.. +|+++|.+|..|.||||+|+..|+.+++++|++ +|+++|.+|..|.||||+|+..
T Consensus 187 ~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~ 264 (437)
T PHA02795 187 IQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDR 264 (437)
T ss_pred hccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHc
Confidence 46689999999999999999999 899999999999999999999999999999999 7999999999999999999998
Q ss_pred C--------CHHHHHHHHhCCC
Q psy630 334 E--------HTDLIEYLVNSGS 347 (347)
Q Consensus 334 ~--------~~~~v~~Ll~~GA 347 (347)
| +.+++++|+++||
T Consensus 265 g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 265 GSVIARRETHLKILEILLREPL 286 (437)
T ss_pred CCcccccccHHHHHHHHHhCCC
Confidence 8 4699999999986
No 45
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.62 E-value=2e-15 Score=145.22 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=67.6
Q ss_pred CCcccCCC-CCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDN-EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~-~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+.+..+.. |.||||+|+..+..+++++|+. .|++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.|
T Consensus 159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~T 236 (477)
T PHA02878 159 DINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNT 236 (477)
T ss_pred CCCccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence 44555555 6677777776666666666666 667777777777777777777777777777776 57777777777777
Q ss_pred HHHHHHHc-CCHHHHHHHHhCCC
Q psy630 326 GLDYAKAI-EHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~-~~~~~v~~Ll~~GA 347 (347)
|||+|+.. ++.+++++|+++||
T Consensus 237 pLh~A~~~~~~~~iv~~Ll~~ga 259 (477)
T PHA02878 237 PLHISVGYCKDYDILKLLLEHGV 259 (477)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCC
Confidence 77777653 56677777777664
No 46
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=142.57 Aligned_cols=100 Identities=25% Similarity=0.304 Sum_probs=90.9
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+..+++++|++ .|++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.|
T Consensus 115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~g~t 192 (434)
T PHA02874 115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGES 192 (434)
T ss_pred CCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCC
Confidence 3566677889999999999888889999888 799999999999999999999999999999998 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 193 pL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 193 PLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred HHHHHHHcCCHHHHHHHHhCCC
Confidence 9999999999999999999885
No 47
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.61 E-value=4.1e-15 Score=127.04 Aligned_cols=100 Identities=21% Similarity=0.191 Sum_probs=85.9
Q ss_pred cCCcccC-CCCCcHHHHHHcC---ChHHHHHHHhhcCCCCccccCCCCchHHHHHHH--cCCHHHHHHHHhhcCCCcccc
Q psy630 246 NDESQLD-DNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACD--RGHLKVVQHLIEKCGADVNVT 319 (347)
Q Consensus 246 ~~~~~~~-~~~~~~l~~a~~~---~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~~ga~i~~~ 319 (347)
.+.+..+ ..+.|+||.|+.. ...+++++|++ .|+++|.+|..|.||||+|+. .++.+++++|++ +|++++.+
T Consensus 77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~ 154 (209)
T PHA02859 77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNK 154 (209)
T ss_pred CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccc
Confidence 3566665 4789999986542 35788898888 899999999999999999876 468999999999 79999999
Q ss_pred CCCCCcHHHH-HHHcCCHHHHHHHHhCCC
Q psy630 320 DSDGDYGLDY-AKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 320 d~~g~TpLh~-A~~~~~~~~v~~Ll~~GA 347 (347)
|..|.||||. |+..++.+++++|+++||
T Consensus 155 d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga 183 (209)
T PHA02859 155 DFDNNNILYSYILFHSDKKIFDFLTSLGI 183 (209)
T ss_pred cCCCCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence 9999999995 567889999999999986
No 48
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.61 E-value=4.2e-15 Score=132.16 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=48.4
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCccccC----CCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc-CCCCCcHHHHHH
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQLD----ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT-DSDGDYGLDYAK 331 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d----~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~-d~~g~TpLh~A~ 331 (347)
++|++|+..+..+++++|++ .|+++|.++ ..|.||||+|+..++.+++++|++ +||++|.+ +..|.||||+|+
T Consensus 35 ~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~~~g~TpLh~Aa 112 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAEEAKITPLYISV 112 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccCCCCCCHHHHHH
Confidence 44455555555555555555 455555542 355555555555555555555555 45555554 234555555555
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..++.+++++|+.+||
T Consensus 113 ~~~~~eivklLL~~GA 128 (300)
T PHA02884 113 LHGCLKCLEILLSYGA 128 (300)
T ss_pred HcCCHHHHHHHHHCCC
Confidence 5555555555555554
No 49
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.61 E-value=5.4e-15 Score=126.33 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred CcccCCCCCcHHHHHHcCC--hHHHHHHHhhcCCCCccccC-CCCchHHHHHHHc---CCHHHHHHHHhhcCCCccccCC
Q psy630 248 ESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~--~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~---g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
.+..+..|.||||+|+..+ ..+++++|++ .|+++|.++ ..|+||||+|+.. ++.+++++|++ +|+++|.+|.
T Consensus 44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~-~gadin~~d~ 121 (209)
T PHA02859 44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILID-SGSSITEEDE 121 (209)
T ss_pred hhccCccCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHH-CCCCCCCcCC
Confidence 3456778999999998643 6788999998 899999997 4899999998764 47999999999 7999999999
Q ss_pred CCCcHHHHHHH--cCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKA--IEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~--~~~~~~v~~Ll~~GA 347 (347)
.|.||||+|+. .++.+++++|+++||
T Consensus 122 ~G~TpLh~a~~~~~~~~~iv~~Li~~ga 149 (209)
T PHA02859 122 DGKNLLHMYMCNFNVRINVIKLLIDSGV 149 (209)
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence 99999999986 468999999999986
No 50
>KOG0117|consensus
Probab=99.61 E-value=2.2e-15 Score=134.29 Aligned_cols=124 Identities=16% Similarity=0.269 Sum_probs=100.3
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEeeeC-CCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCcccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQI-MNASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLS 80 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~~~i~~~~-~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~ 80 (347)
...++|||||||.+.++++|.+.|++.++- ..|-+..++ +..++||||||+|.+...|..|.+. ....+.|+.+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 356799999999999999999999998764 445444333 3467999999999999999888863 56678899999
Q ss_pred ccCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceec
Q psy630 81 IQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQ 131 (347)
Q Consensus 81 v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~ 131 (347)
|.||.+.......... .-..+||+||+..+|+|.|+++|+.||.++.+.
T Consensus 242 VdWAep~~e~ded~ms--~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk 290 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMS--KVKVLYVRNLMESTTEETLKKLFNEFGKVERVK 290 (506)
T ss_pred eeccCcccCCChhhhh--heeeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence 9999997765443322 236789999999999999999999999987433
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=4.3e-15 Score=103.78 Aligned_cols=69 Identities=36% Similarity=0.764 Sum_probs=65.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccc
Q psy630 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLS 80 (347)
Q Consensus 11 l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 80 (347)
|||+|||+++++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|++|+. +++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 579999999999999999999999 499999998874
No 52
>KOG0509|consensus
Probab=99.60 E-value=2.4e-15 Score=140.40 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=88.0
Q ss_pred cCCcccC-CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 246 NDESQLD-DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~-~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
.++|... ..+.||||||+..++..++.+|++ +|++++.+|.+|.||||+||..||..++.+||. .|+++|.+|.+|+
T Consensus 102 advn~~gG~l~stPLHWAar~G~~~vv~lLlq-hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~-~~~d~d~~D~~gr 179 (600)
T KOG0509|consen 102 ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ-HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLS-KGADIDLRDNNGR 179 (600)
T ss_pred CCccccCCCCCCCcchHHHHcCcHHHHHHHHH-cCCCCceecCCCCcHHHHHHHhCchHHHHHHHH-hcccCCCcCCCCC
Confidence 3567666 567899999999999999999999 899999999999999999999999999999998 5999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||||+..|+...+..||..||
T Consensus 180 TpLmwAaykg~~~~v~~LL~f~a 202 (600)
T KOG0509|consen 180 TPLMWAAYKGFALFVRRLLKFGA 202 (600)
T ss_pred CHHHHHHHhcccHHHHHHHHhcc
Confidence 99999999998887888888775
No 53
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.60 E-value=4.4e-15 Score=151.37 Aligned_cols=103 Identities=25% Similarity=0.314 Sum_probs=90.8
Q ss_pred ecccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC---------------------
Q psy630 243 SMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH--------------------- 301 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~--------------------- 301 (347)
....+.+..|..|.|+||.|+..++.+++++|++ .|+++|.+|..|.||||+|+..||
T Consensus 546 ~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~ 624 (823)
T PLN03192 546 KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGD 624 (823)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCch
Confidence 3445688889999999999999999999999999 899999999999999886655554
Q ss_pred ----------HHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 302 ----------LKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 302 ----------~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.+++++|++ +|+++|.+|..|+||||+|+..|+.+++++|+++||
T Consensus 625 ~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 625 LLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred HHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence 555666777 799999999999999999999999999999999997
No 54
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.59 E-value=4e-15 Score=122.44 Aligned_cols=97 Identities=21% Similarity=0.414 Sum_probs=77.9
Q ss_pred cccCCCCC-cHHHHHHcCChHHHH---HHHhhcCCCCccccCCCCchHHHHHHHcCCHHH---HHHHHhhcCCCccccC-
Q psy630 249 SQLDDNEK-NIYEWAKEGKLDMLV---KQLTKLKDFNINQLDENGLNCLHWACDRGHLKV---VQHLIEKCGADVNVTD- 320 (347)
Q Consensus 249 ~~~~~~~~-~~l~~a~~~~~~~~~---~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~---v~~Ll~~~ga~i~~~d- 320 (347)
+..+..+. +++++|+.|+...+. ++|.. .+..++.+|..|+||||+||.+|+.++ +++|+. .|+++|.+|
T Consensus 14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadin~~d~ 91 (166)
T PHA02743 14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADINAREL 91 (166)
T ss_pred hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCCCCCCC
Confidence 33444444 555566777775444 45555 688899999999999999999988654 789998 799999998
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHh-CCC
Q psy630 321 SDGDYGLDYAKAIEHTDLIEYLVN-SGS 347 (347)
Q Consensus 321 ~~g~TpLh~A~~~~~~~~v~~Ll~-~GA 347 (347)
..|.||||+|+..++.+++++|+. .||
T Consensus 92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~ga 119 (166)
T PHA02743 92 GTGNTLLHIAASTKNYELAEWLCRQLGV 119 (166)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhccCC
Confidence 589999999999999999999995 675
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=4.3e-15 Score=142.13 Aligned_cols=143 Identities=15% Similarity=0.248 Sum_probs=106.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCC-eeEEEE-eeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQ-IMNASV-MFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLSI 81 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~~~i-~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~v 81 (347)
+.++|||+|||+++++++|.+.|++++. +..+.+ .....+++++|||||+|.+.++|..|++. ....+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4678999999999999999999999864 333333 33344578899999999999999999974 345688999999
Q ss_pred cCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhc--cccceecccCCCCCccchhHHHHHHHHHHcCCCCH
Q psy630 82 QPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALY--KQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAK 159 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~f--g~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~ 159 (347)
.++.+........ .-...+|||+||+..+++++|+++|+.| |.|....+. + ..|| +...+.
T Consensus 217 dwA~p~~~~d~~~--~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--r-----------gfAF--VeF~s~ 279 (578)
T TIGR01648 217 DWAEPEEEVDEDV--MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--R-----------DYAF--VHFEDR 279 (578)
T ss_pred Eeecccccccccc--cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--c-----------CeEE--EEeCCH
Confidence 9987754322111 1223689999999999999999999999 888754322 1 1233 345567
Q ss_pred HHHHHHH
Q psy630 160 SEAMSKY 166 (347)
Q Consensus 160 ~eA~~~y 166 (347)
++|.++.
T Consensus 280 e~A~kAi 286 (578)
T TIGR01648 280 EDAVKAM 286 (578)
T ss_pred HHHHHHH
Confidence 8887763
No 56
>KOG4205|consensus
Probab=99.59 E-value=2.2e-15 Score=133.09 Aligned_cols=129 Identities=25% Similarity=0.494 Sum_probs=112.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~ 85 (347)
.+.+++||++|+++++++.|+++|.+||.|..|.+++|+.+++++||+||+|.+.+....++....+.+.|+.|.+.++-
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 47789999999999999999999999999999999999999999999999999999999999888899999999999988
Q ss_pred cccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 86 SHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 86 ~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
++....... ......++||+.+|..+++++++++|..||.|....+..+
T Consensus 84 ~r~~~~~~~-~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVG-RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD 132 (311)
T ss_pred Ccccccccc-cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec
Confidence 765432221 1113468999999999999999999999997776555554
No 57
>KOG0502|consensus
Probab=99.59 E-value=1.8e-15 Score=123.43 Aligned_cols=99 Identities=26% Similarity=0.267 Sum_probs=94.7
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
..|..|..|.|+|.||+..++..++++|++ .|++++...+...|+|.+|+..|..+||++||. .+.|||.-|.+|-||
T Consensus 152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTp 229 (296)
T KOG0502|consen 152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTP 229 (296)
T ss_pred cccCccccCchHhHHHHhcCchHHHHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCce
Confidence 468899999999999999999999999999 899999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
|-||++.||.+||+.||..||
T Consensus 230 LlyAvrgnhvkcve~Ll~sGA 250 (296)
T KOG0502|consen 230 LLYAVRGNHVKCVESLLNSGA 250 (296)
T ss_pred eeeeecCChHHHHHHHHhcCC
Confidence 999999999999999999997
No 58
>KOG0105|consensus
Probab=99.58 E-value=4.7e-15 Score=117.29 Aligned_cols=135 Identities=18% Similarity=0.234 Sum_probs=107.9
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
.+..++|||+|||.++.+.+|+++|-+||.|..|.+... ....+||||+|++..+|+.|+.- ++-.++|..|+|.+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 466789999999999999999999999999999987432 34568999999999999999986 99999999999997
Q ss_pred CCcccccc-------------------hhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccch
Q psy630 84 SDSHNRMA-------------------ENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNM 142 (347)
Q Consensus 84 ~~~~~~~~-------------------~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~ 142 (347)
+....... .-....-....+.|.+||+..++.+|++.+..-|.|...++..+-.|..++
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~ 157 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEY 157 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeee
Confidence 75532100 000111223578899999999999999999999999888887776555433
No 59
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.58 E-value=3.8e-15 Score=98.37 Aligned_cols=54 Identities=41% Similarity=0.760 Sum_probs=46.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy630 289 GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 343 (347)
Q Consensus 289 g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll 343 (347)
|+||||+||..|+.+++++|++ .|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 7899999999999999999999 69999999999999999999999999999996
No 60
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=137.56 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=90.1
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
.+..|.||||+|+..+..+++++|++ .|++++.++..|.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|
T Consensus 98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A 175 (413)
T PHA02875 98 FYKDGMTPLHLATILKKLDIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIA 175 (413)
T ss_pred ccCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHH
Confidence 34568899999999999999999999 899999999999999999999999999999999 7999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..|+.+++++|+++||
T Consensus 176 ~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 176 MAKGDIAICKMLLDSGA 192 (413)
T ss_pred HHcCCHHHHHHHHhCCC
Confidence 99999999999999997
No 61
>PHA03095 ankyrin-like protein; Provisional
Probab=99.57 E-value=1e-14 Score=140.24 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=90.8
Q ss_pred ccCCcccCCCCCcHHHHHHcCChH--HHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCC
Q psy630 245 INDESQLDDNEKNIYEWAKEGKLD--MLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD 322 (347)
Q Consensus 245 ~~~~~~~~~~~~~~l~~a~~~~~~--~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~ 322 (347)
..+++..+..|.||||+|+..+.. .++.+|.. .++++|.+|..|+||||+|+..|+.+++++||+ .|++++.+|..
T Consensus 212 g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~ 289 (471)
T PHA03095 212 GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSD 289 (471)
T ss_pred CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCC
Confidence 346788899999999999877653 45566666 699999999999999999999999999999999 79999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 323 GDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 323 g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|.||||+|+..|+.+++++||++|+
T Consensus 290 g~tpl~~A~~~~~~~~v~~LL~~~~ 314 (471)
T PHA03095 290 GNTPLSLMVRNNNGRAVRAALAKNP 314 (471)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 9999999999999999999999875
No 62
>PHA02798 ankyrin-like protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=140.58 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=83.3
Q ss_pred cccCCcccCCCCCcHHHHHHcC-----ChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcC---CHHHHHHHHhhcCCC
Q psy630 244 MINDESQLDDNEKNIYEWAKEG-----KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG---HLKVVQHLIEKCGAD 315 (347)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~ga~ 315 (347)
...+++..+..|.||||.++.+ +...++++|++ .|+++|.+|..|+||||+|+.++ +.+++++|++ .|++
T Consensus 60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~-~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gad 137 (489)
T PHA02798 60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE-NGADINKKNSDGETPLYCLLSNGYINNLEILLFMIE-NGAD 137 (489)
T ss_pred CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH-CCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCC
Confidence 3346777778888888887653 45678888888 78888888888899999888875 6788888888 6899
Q ss_pred ccccCCCCCcHHHHHHHcCC---HHHHHHHHhCCC
Q psy630 316 VNVTDSDGDYGLDYAKAIEH---TDLIEYLVNSGS 347 (347)
Q Consensus 316 i~~~d~~g~TpLh~A~~~~~---~~~v~~Ll~~GA 347 (347)
++.+|..|.||||+|+..++ .+++++|+++||
T Consensus 138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga 172 (489)
T PHA02798 138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV 172 (489)
T ss_pred ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC
Confidence 98888889999998888887 888888888885
No 63
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=3.5e-14 Score=136.03 Aligned_cols=78 Identities=29% Similarity=0.640 Sum_probs=74.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
.++|||+|||+.+++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+.. ++..+.|++|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 57999999999999999999999999999999999999999999999999999999999984 9999999999999854
No 64
>KOG0515|consensus
Probab=99.56 E-value=8.3e-15 Score=133.24 Aligned_cols=87 Identities=34% Similarity=0.507 Sum_probs=78.7
Q ss_pred HHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHH
Q psy630 258 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 337 (347)
Q Consensus 258 ~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~ 337 (347)
+|.+|..|.++.+.+.+-+ --|+...+..|.|+||-|+..||.+||+|||. +|++||+.|++||||||.|+.|++..
T Consensus 554 LLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~ 630 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVP 630 (752)
T ss_pred HHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchH
Confidence 5567778888766666655 56788899999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhCCC
Q psy630 338 LIEYLVNSGS 347 (347)
Q Consensus 338 ~v~~Ll~~GA 347 (347)
+++.|++.||
T Consensus 631 ~ckqLVe~Ga 640 (752)
T KOG0515|consen 631 MCKQLVESGA 640 (752)
T ss_pred HHHHHHhccc
Confidence 9999999997
No 65
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.56 E-value=3.5e-15 Score=99.12 Aligned_cols=51 Identities=43% Similarity=0.677 Sum_probs=33.8
Q ss_pred CCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 279 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 279 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
..+++.+|..|.||||+||..|+.+++++||+ .|++++.+|..|+||||+|
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence 48999999999999999999999999999997 8999999999999999997
No 66
>KOG0123|consensus
Probab=99.56 E-value=6.8e-15 Score=134.56 Aligned_cols=129 Identities=22% Similarity=0.335 Sum_probs=111.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
..|||| +++|+..|.+.|+++|+++++++.+|. | +-|||||.|.++.+|.+|+.. |...+.|++++|.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 999999999999999999986 999999999999998765
Q ss_pred cccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 88 NRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 88 ~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
... +||.||++.++...|.++|+.||+|.+.++.++..| +|+. |.. .-+.++|.++
T Consensus 76 ~~~------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-------~kg~-FV~--f~~e~~a~~a 131 (369)
T KOG0123|consen 76 PSL------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-------SKGY-FVQ--FESEESAKKA 131 (369)
T ss_pred Cce------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-------ceee-EEE--eCCHHHHHHH
Confidence 542 899999999999999999999999999888888776 4554 443 3345555444
No 67
>PHA03095 ankyrin-like protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=138.97 Aligned_cols=99 Identities=23% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCcccCCCCCcHHHHHHcCC-hHHHHHHHhhcCCCCccccCCCCchHHHHHH--HcCCHHHHHHHHhhcCCCccccCCCC
Q psy630 247 DESQLDDNEKNIYEWAKEGK-LDMLVKQLTKLKDFNINQLDENGLNCLHWAC--DRGHLKVVQHLIEKCGADVNVTDSDG 323 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~-~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~ga~i~~~d~~g 323 (347)
+.+..+..|.||||+|+..+ ...++++|.+ .|++++.+|..|.||||+|+ .+++.+++++|++ .|++++.+|..|
T Consensus 75 din~~~~~g~TpLh~A~~~~~~~~iv~lLl~-~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~~g 152 (471)
T PHA03095 75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIK-AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYG 152 (471)
T ss_pred CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCCCC
Confidence 45555556666666655555 3556666665 56666666666666666666 3445566666665 466666666666
Q ss_pred CcHHHHHHHcC--CHHHHHHHHhCCC
Q psy630 324 DYGLDYAKAIE--HTDLIEYLVNSGS 347 (347)
Q Consensus 324 ~TpLh~A~~~~--~~~~v~~Ll~~GA 347 (347)
.||||+|+..+ +.+++++|+++||
T Consensus 153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~ 178 (471)
T PHA03095 153 MTPLAVLLKSRNANVELLRLLIDAGA 178 (471)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence 66666665544 4556666666654
No 68
>KOG0110|consensus
Probab=99.56 E-value=7.2e-15 Score=138.01 Aligned_cols=155 Identities=20% Similarity=0.332 Sum_probs=117.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCC---CCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNT---GLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t---~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
++|||.||++++|.+.+..+|..+|.|.++.|..-+.- -.|.|||||+|.+.++|+.|++. +|+.++|+.|.|+.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999998765431 23569999999999999999996 999999999999887
Q ss_pred Cccccc--chhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHH
Q psy630 85 DSHNRM--AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEA 162 (347)
Q Consensus 85 ~~~~~~--~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA 162 (347)
..+..- .......-....|.|+|+|..++-.+++++|+.||++... +.|+- -..+..++.+| +..+++.||
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksv--RlPKK---~~k~a~rGF~F--v~f~t~~ea 668 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSV--RLPKK---IGKGAHRGFGF--VDFLTPREA 668 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeee--ccchh---hcchhhcccee--eeccCcHHH
Confidence 722110 0111111124589999999999999999999999999854 44432 01222233344 458899999
Q ss_pred HHHHHHHH
Q psy630 163 MSKYIALL 170 (347)
Q Consensus 163 ~~~yi~~~ 170 (347)
.+++-.+.
T Consensus 669 ~nA~~al~ 676 (725)
T KOG0110|consen 669 KNAFDALG 676 (725)
T ss_pred HHHHHhhc
Confidence 99985554
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=1.6e-14 Score=123.05 Aligned_cols=77 Identities=17% Similarity=0.381 Sum_probs=71.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCcc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~~ 87 (347)
.++|||+|||+.+++++|+++|+.||.|..|.|++++. ++|||||+|.+.++|..|+.+++..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998863 579999999999999999988999999999999987654
No 70
>KOG0145|consensus
Probab=99.55 E-value=7.4e-15 Score=122.20 Aligned_cols=145 Identities=21% Similarity=0.426 Sum_probs=112.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC--cccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG--SRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~ 80 (347)
+.-...+|||++||..+|..+|+.+|++||.|...+|+.|..||.++|++||.|+.+.+|+.|+.. ||..-.| .+|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 334456899999999999999999999999999999999999999999999999999999999985 8888766 4788
Q ss_pred ccCCCcccccc--------------------hhh---------------hhhcc---------------------ccccc
Q psy630 81 IQPSDSHNRMA--------------------ENM---------------EDRFN---------------------QACDY 104 (347)
Q Consensus 81 v~~~~~~~~~~--------------------~~~---------------~~~f~---------------------~~~~~ 104 (347)
|+++....... ... ...|. .-++|
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 87765532110 000 00111 13789
Q ss_pred ccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHH
Q psy630 105 LPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 153 (347)
Q Consensus 105 v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~ 153 (347)
|=||.++.++.-|.++|++||-|+..++..+-. ..+.|+.+|..
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~t-----tnkCKGfgFVt 326 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFT-----TNKCKGFGFVT 326 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCC-----cccccceeEEE
Confidence 999999999999999999999999888766532 23445555554
No 71
>KOG0121|consensus
Probab=99.55 E-value=8.2e-15 Score=109.01 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=76.3
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
..+..++||||||++.++|++|.++|+++|.|..|.+-.|+.+..+.|||||+|.+.++|..|++. +++.++.++|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 346778999999999999999999999999999999989999899999999999999999999997 9999999999997
Q ss_pred CCC
Q psy630 83 PSD 85 (347)
Q Consensus 83 ~~~ 85 (347)
+--
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 653
No 72
>PHA02946 ankyin-like protein; Provisional
Probab=99.55 E-value=3e-14 Score=135.28 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=88.9
Q ss_pred ecccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC--HHHHHHHHhhcCCCccc-c
Q psy630 243 SMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH--LKVVQHLIEKCGADVNV-T 319 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~--~~~v~~Ll~~~ga~i~~-~ 319 (347)
+...+++..+..|.||||+|+..+..+++++|+. .|+++|.+|..|+||||+|+..++ .+++++|++ .|+++|. .
T Consensus 60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~ 137 (446)
T PHA02946 60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSV 137 (446)
T ss_pred HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCccccc
Confidence 3445688889999999999999999999999998 799999999999999999987664 788999998 7999995 6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 320 DSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 320 d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|..|.|||| ||..++.+++++|+++||
T Consensus 138 d~~g~tpL~-aa~~~~~~vv~~Ll~~ga 164 (446)
T PHA02946 138 DEEGCGPLL-ACTDPSERVFKKIMSIGF 164 (446)
T ss_pred CCCCCcHHH-HHHCCChHHHHHHHhccc
Confidence 889999997 666789999999999886
No 73
>KOG0125|consensus
Probab=99.55 E-value=8.1e-15 Score=125.87 Aligned_cols=85 Identities=26% Similarity=0.604 Sum_probs=77.1
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
+++....++|+|+|||+...+.||+.+|++||.|.+|.|+.+. .-||||+||+|++.++|++|.+. +|.++.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 4556677899999999999999999999999999999999875 45899999999999999999986 99999999999
Q ss_pred ccCCCccc
Q psy630 81 IQPSDSHN 88 (347)
Q Consensus 81 v~~~~~~~ 88 (347)
|..+..+-
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 99887753
No 74
>KOG0109|consensus
Probab=99.54 E-value=7.7e-15 Score=124.06 Aligned_cols=108 Identities=20% Similarity=0.438 Sum_probs=97.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~~~ 87 (347)
-+|||||||..+++.+|+.+|++||+|++|.|+++ ||||..++...+..|+. +++-.++|..|.|.-+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999865 99999999999999999 5999999999999888776
Q ss_pred cccchhhhhhcccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 88 NRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 88 ~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
+. ...+++|+|+.+..+..+++..|..||.+.+-++.
T Consensus 75 sk---------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv 111 (346)
T KOG0109|consen 75 SK---------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV 111 (346)
T ss_pred CC---------CccccccCCCCccccCHHHhhhhcccCCceeeeee
Confidence 43 34678999999999999999999999999865543
No 75
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.54 E-value=2.6e-14 Score=137.74 Aligned_cols=100 Identities=25% Similarity=0.364 Sum_probs=94.1
Q ss_pred cCCcccCCCCCcHHHHHH--cCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcC--CHHHHHHHHhhcCCCccccCC
Q psy630 246 NDESQLDDNEKNIYEWAK--EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~--~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
.+.+..+..|.||||+|+ ..+..+++++|++ .|++++..+..|.||||+|+..+ +.+++++|++ .|++++.+|.
T Consensus 97 a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~ 174 (480)
T PHA03100 97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNR 174 (480)
T ss_pred CCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccC
Confidence 345667888999999999 9999999999999 89999999999999999999999 9999999999 7999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.|.||||+|+..|+.+++++|+++||
T Consensus 175 ~g~tpL~~A~~~~~~~iv~~Ll~~ga 200 (480)
T PHA03100 175 YGYTPLHIAVEKGNIDVIKFLLDNGA 200 (480)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 99999999999999999999999986
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.2e-14 Score=99.46 Aligned_cols=69 Identities=28% Similarity=0.705 Sum_probs=63.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 11 l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
|||+|||+++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|..|+.. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999997 77999998763
No 77
>PHA02946 ankyin-like protein; Provisional
Probab=99.54 E-value=3.5e-14 Score=134.80 Aligned_cols=99 Identities=18% Similarity=0.285 Sum_probs=83.7
Q ss_pred cCCcccCCCCCcHHHHHHcCC--hHHHHHHHhhcCCCCccc-cCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQ-LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD 322 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~--~~~~~~lL~~~~~~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~ 322 (347)
.+++..|..|.||||+|+..+ ..+++++|+. .|++++. .|..|.|||| ||..++.+++++|++ .|++++.+|..
T Consensus 96 Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~-~gad~~~~d~~ 172 (446)
T PHA02946 96 ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS-IGFEARIVDKF 172 (446)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh-ccccccccCCC
Confidence 467888899999999887654 3567888888 7999985 6889999997 666789999999998 79999999999
Q ss_pred CCcHHHHHHHcCC--HHHHHHHHhCCC
Q psy630 323 GDYGLDYAKAIEH--TDLIEYLVNSGS 347 (347)
Q Consensus 323 g~TpLh~A~~~~~--~~~v~~Ll~~GA 347 (347)
|+||||+|+..++ .+++++|+++||
T Consensus 173 G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga 199 (446)
T PHA02946 173 GKNHIHRHLMSDNPKASTISWMMKLGI 199 (446)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 9999999887554 689999999986
No 78
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.53 E-value=3.5e-14 Score=136.92 Aligned_cols=99 Identities=24% Similarity=0.255 Sum_probs=91.3
Q ss_pred CCcccCCCC------CcHHHHHHcCCh--HHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy630 247 DESQLDDNE------KNIYEWAKEGKL--DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV 318 (347)
Q Consensus 247 ~~~~~~~~~------~~~l~~a~~~~~--~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~ 318 (347)
+.+..+..+ .+++|.|+..+. ..++++|+. .|+++|.+|..|.||||+|+..|+.+++++|++ .|++++.
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~ 278 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNL 278 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCc
Confidence 455555566 899999998888 889999999 799999999999999999999999999999999 7999999
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 319 TDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 319 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+|..|.||||+|+..++.+++++|+++||
T Consensus 279 ~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 279 VNKYGDTPLHIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence 99999999999999999999999999996
No 79
>KOG0123|consensus
Probab=99.53 E-value=2.1e-14 Score=131.40 Aligned_cols=130 Identities=23% Similarity=0.415 Sum_probs=112.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
++...|||.||+++++...|.++|+.||.|++|++.++.. | ++|| ||.|.+.++|.+|+.. ||..+.|++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 3445599999999999999999999999999999999975 6 9999 9999999999999997 999999999999988
Q ss_pred Ccccccchhhhh-hcccccccccCCcccccchhhHHHHhhccccceecccCCCCC
Q psy630 85 DSHNRMAENMED-RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPS 138 (347)
Q Consensus 85 ~~~~~~~~~~~~-~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~ 138 (347)
..+..+..+... .-....++|.+.+.+.+++.+..+|+.||.++...+..+..+
T Consensus 151 ~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 151 ERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred cchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 887665544333 222367899999999999999999999999998888776543
No 80
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.52 E-value=4.7e-14 Score=135.77 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=87.3
Q ss_pred ccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHc-CCHHHHHHHHhhcCCCccccCC-C
Q psy630 245 INDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDR-GHLKVVQHLIEKCGADVNVTDS-D 322 (347)
Q Consensus 245 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~~ga~i~~~d~-~ 322 (347)
..+.+..+..|.||||.|+..+...++++|+. .|++++.+|..|.||||+|+.. ++.+++++|++ +|+++|.++. .
T Consensus 191 gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~ 268 (477)
T PHA02878 191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKSYIL 268 (477)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCC
Confidence 34677788889999999998888889999998 8999999999999999999975 68999999998 6999999886 7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 323 GDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 323 g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|.||||+| .++.+++++|+++||
T Consensus 269 g~TpLh~A--~~~~~~v~~Ll~~ga 291 (477)
T PHA02878 269 GLTALHSS--IKSERKLKLLLEYGA 291 (477)
T ss_pred CCCHHHHH--ccCHHHHHHHHHCCC
Confidence 99999999 567899999999987
No 81
>KOG0122|consensus
Probab=99.52 E-value=3.5e-14 Score=117.35 Aligned_cols=82 Identities=27% Similarity=0.458 Sum_probs=77.3
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
.+..+|-|.|||.++++.+|+++|.+||.|..+.+.+|+.||.++|||||.|.+.+.|.+|+.. ||.-++.-.|+|.++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4567899999999999999999999999999999999999999999999999999999999985 999999999999998
Q ss_pred Ccc
Q psy630 85 DSH 87 (347)
Q Consensus 85 ~~~ 87 (347)
.|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 82
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.52 E-value=6.8e-14 Score=124.45 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=78.6
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
+..|.||||+|+..+..+++++|+. .|+++|.++ ..|.||||+|+..++.+++++|+. +|++++.+|..|.||||+|
T Consensus 67 d~~g~TpLh~Aa~~~~~eivklLL~-~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A 144 (300)
T PHA02884 67 ENSKTNPLIYAIDCDNDDAAKLLIR-YGADVNRYAEEAKITPLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELA 144 (300)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHH
Confidence 3578999999999999999999999 899999964 589999999999999999999999 7999999999999999999
Q ss_pred HHcCCHHHHHH
Q psy630 331 KAIEHTDLIEY 341 (347)
Q Consensus 331 ~~~~~~~~v~~ 341 (347)
+..++..++.+
T Consensus 145 ~~~~~~~~~~~ 155 (300)
T PHA02884 145 LMICNNFLAFM 155 (300)
T ss_pred HHhCChhHHHH
Confidence 98665554433
No 83
>KOG0510|consensus
Probab=99.51 E-value=3.6e-14 Score=135.46 Aligned_cols=127 Identities=24% Similarity=0.278 Sum_probs=99.3
Q ss_pred ccccccCCCccccCCCCCcc----ceeecccCCcccCCCCCcHHHHHHcCCh-HHHHHHHhhcCCCCccccCCCCchHHH
Q psy630 220 WDESQESGSKENEGQTKGWV----NVSSMINDESQLDDNEKNIYEWAKEGKL-DMLVKQLTKLKDFNINQLDENGLNCLH 294 (347)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~lL~~~~~~~~~~~d~~g~tpLh 294 (347)
.+++...-.+......+|.. .+.....+.+....++.+|||.|+.++. ..+.++|.......+|..|-.|+||||
T Consensus 267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH 346 (929)
T KOG0510|consen 267 NDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH 346 (929)
T ss_pred hcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence 44444445555556666653 2334445778888889999998776655 455555553455678999999999999
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcc---ccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 295 WACDRGHLKVVQHLIEKCGADVN---VTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 295 ~A~~~g~~~~v~~Ll~~~ga~i~---~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+..||..++++||+ .||+.+ ..|.+|.||||.|+..|+..+|++|+.+||
T Consensus 347 laa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga 401 (929)
T KOG0510|consen 347 LAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGA 401 (929)
T ss_pred hhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence 9999999999999999 699988 459999999999999999999999999997
No 84
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.51 E-value=9e-14 Score=132.28 Aligned_cols=100 Identities=26% Similarity=0.367 Sum_probs=89.3
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhc----------------------CCCCccccCCCCchHHHHHHHcCCHHH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKL----------------------KDFNINQLDENGLNCLHWACDRGHLKV 304 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~----------------------~~~~~~~~d~~g~tpLh~A~~~g~~~~ 304 (347)
+.+..+..+.+++|.|+..+..+++++|... .|++++.+|..|.||||+|+..|+.++
T Consensus 60 ~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~ 139 (434)
T PHA02874 60 DINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLES 139 (434)
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHH
Confidence 4566777889999999988888888888761 245677889999999999999999999
Q ss_pred HHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 305 VQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 305 v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+++|++ .|++++.+|..|.||||+|+..|+.+++++|+++||
T Consensus 140 v~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~ 181 (434)
T PHA02874 140 IKMLFE-YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181 (434)
T ss_pred HHHHHh-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence 999999 799999999999999999999999999999999986
No 85
>KOG4177|consensus
Probab=99.51 E-value=3.5e-14 Score=142.89 Aligned_cols=99 Identities=24% Similarity=0.221 Sum_probs=92.7
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
.++..+..+.||||.|+..+...++++|++ +|++++.+|+.|+||||.||..|+.+|+.+|++ +||++|..|.+|.||
T Consensus 532 ~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~vna~d~~g~Tp 609 (1143)
T KOG4177|consen 532 NVDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-HGASVNAADLDGFTP 609 (1143)
T ss_pred ceehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHH-cCCCCCcccccCcch
Confidence 356677888999999999999999999999 899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+++++++|+..|+
T Consensus 610 L~iA~~lg~~~~~k~l~~~~~ 630 (1143)
T KOG4177|consen 610 LHIAVRLGYLSVVKLLKVVTA 630 (1143)
T ss_pred hHHHHHhcccchhhHHHhccC
Confidence 999999999999999998775
No 86
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.50 E-value=7.9e-14 Score=137.48 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=88.0
Q ss_pred ccCCcccCCCCCcHHHHHHcCCh--HHHHHHHhhcCCCCccccCCCCchHHHHH--------------------------
Q psy630 245 INDESQLDDNEKNIYEWAKEGKL--DMLVKQLTKLKDFNINQLDENGLNCLHWA-------------------------- 296 (347)
Q Consensus 245 ~~~~~~~~~~~~~~l~~a~~~~~--~~~~~lL~~~~~~~~~~~d~~g~tpLh~A-------------------------- 296 (347)
..+++..+..|.||||+|+..+. .+++++|++ .|+++|.+|..|+||||+|
T Consensus 202 GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe-~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~ 280 (764)
T PHA02716 202 GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIE-LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN 280 (764)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc
Confidence 34677888899999999987763 478999988 8999999999999999975
Q ss_pred -----------HHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCC
Q psy630 297 -----------CDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA--IEHTDLIEYLVNSGS 347 (347)
Q Consensus 297 -----------~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~--~~~~~~v~~Ll~~GA 347 (347)
+..|+.+++++|++ .|++++.+|..|+||||+|+. .++.+++++|+++||
T Consensus 281 ~~~~L~~~i~AA~~g~leiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA 343 (764)
T PHA02716 281 IPMILHSYITLARNIDISVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN 343 (764)
T ss_pred chhhhHHHHHHHHcCCHHHHHHHHh-CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence 44578899999999 799999999999999999864 468899999999997
No 87
>KOG0113|consensus
Probab=99.49 E-value=6.5e-14 Score=118.95 Aligned_cols=79 Identities=25% Similarity=0.566 Sum_probs=74.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
..-+||||+.|+++++|..|+..|+.||+|..|+|++++.||+++|||||+|....+..+|.+. +|.+|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 3458999999999999999999999999999999999999999999999999999999999986 999999999988643
No 88
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.49 E-value=3e-14 Score=115.91 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=75.7
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhh------cCCCCccccCCCCchHHHHHHHcCCHH---HHHHHHhhcCCCcccc
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTK------LKDFNINQLDENGLNCLHWACDRGHLK---VVQHLIEKCGADVNVT 319 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~------~~~~~~~~~d~~g~tpLh~A~~~g~~~---~v~~Ll~~~ga~i~~~ 319 (347)
+..+..|.|+||+|+..+. ++.++.. ..+..++.+|..|+||||+||..|+.+ ++++|+. .|+++|.+
T Consensus 11 ~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~ 87 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGK 87 (154)
T ss_pred HhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCcccc
Confidence 4456789999999887765 2333321 011224557899999999999999874 6889998 79999999
Q ss_pred CC-CCCcHHHHHHHcCCHHHHHHHHhC-CC
Q psy630 320 DS-DGDYGLDYAKAIEHTDLIEYLVNS-GS 347 (347)
Q Consensus 320 d~-~g~TpLh~A~~~~~~~~v~~Ll~~-GA 347 (347)
+. .|+||||+|+..++.+++++|+.+ |+
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~ 117 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGV 117 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Confidence 85 899999999999999999999974 64
No 89
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=133.09 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=86.3
Q ss_pred cCCcccCCCCCcHHHHHHcCC------hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc
Q psy630 246 NDESQLDDNEKNIYEWAKEGK------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 319 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~------~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~ 319 (347)
.+.+..+..+.+++|.+..++ ...++.+|.. ++++|.+|..|+||||+|+..|+.+++++||+ .|+++|.+
T Consensus 209 a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~ 285 (494)
T PHA02989 209 VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNV 285 (494)
T ss_pred CCccccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCcccc
Confidence 356667778899998765543 3567777776 69999999999999999999999999999999 79999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy630 320 DSDGDYGLDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 320 d~~g~TpLh~A~~~~~~~~v~~Ll~~G 346 (347)
|..|.||||+|+..|+.+++++||+.+
T Consensus 286 d~~G~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 286 SKDGDTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999999999999876
No 90
>KOG0126|consensus
Probab=99.48 E-value=4.4e-15 Score=117.19 Aligned_cols=83 Identities=23% Similarity=0.542 Sum_probs=75.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
.+..-|||||||++.|+.+|-.+|++||.|+.|.+++|+.||+|+||||+.|.+..+...|+.. ||..+.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4566899999999999999999999999999999999999999999999999999888888875 999999999999865
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5543
No 91
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=9.8e-14 Score=133.09 Aligned_cols=81 Identities=20% Similarity=0.436 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+++++++|+++|+.||.|.+++|++++.+|+++|||||+|.+.++|.+|+.. |+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999999999999999999999999999999985 9999999999999876
Q ss_pred cc
Q psy630 86 SH 87 (347)
Q Consensus 86 ~~ 87 (347)
+.
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 92
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.48 E-value=1.8e-13 Score=135.06 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=72.5
Q ss_pred cCCccc-CCCCCcHHHHHHc--CChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC--HHHHHHHHhhcCCCccccC
Q psy630 246 NDESQL-DDNEKNIYEWAKE--GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH--LKVVQHLIEKCGADVNVTD 320 (347)
Q Consensus 246 ~~~~~~-~~~~~~~l~~a~~--~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~--~~~v~~Ll~~~ga~i~~~d 320 (347)
.+.+.. +..|.||||+|+. .+..+++++|++ .|+++|.+|..|.||||+|+..|+ .+++++||+ +||++|.+|
T Consensus 167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe-~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe-~GADVN~kD 244 (764)
T PHA02716 167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN-NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIE-LGGDMDMKC 244 (764)
T ss_pred CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCCCCC
Confidence 455666 7889999998753 234678888888 799999999999999999999995 489999999 799999999
Q ss_pred CCCCcHHHHHH
Q psy630 321 SDGDYGLDYAK 331 (347)
Q Consensus 321 ~~g~TpLh~A~ 331 (347)
..|+||||+|+
T Consensus 245 ~~G~TPLh~Ai 255 (764)
T PHA02716 245 VNGMSPIMTYI 255 (764)
T ss_pred CCCCCHHHHHH
Confidence 99999999763
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=5.8e-14 Score=126.62 Aligned_cols=77 Identities=27% Similarity=0.555 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCH--HHHHHHHhc-CCCccCCccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK--EAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~--~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
...+||||||++++++++|+..|..||.|..|.|+ +.|| ||||||+|... .++.+|+.. |+..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 44689999999999999999999999999999999 4467 99999999987 689999985 99999999999999
Q ss_pred CCcc
Q psy630 84 SDSH 87 (347)
Q Consensus 84 ~~~~ 87 (347)
|.+.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9774
No 94
>KOG0510|consensus
Probab=99.47 E-value=1e-13 Score=132.36 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=91.6
Q ss_pred CcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHh-hcCCCccccCCCCCcH
Q psy630 248 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE-KCGADVNVTDSDGDYG 326 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~ga~i~~~d~~g~Tp 326 (347)
.+..|.+|.||||+|+..+....+..|+. .|++++.++.++.||||.||.+|++.+|+-||+ ..-..+|..|..|.||
T Consensus 266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~-~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tp 344 (929)
T KOG0510|consen 266 VNDEDNDGCTPLHYAARQGGPESVDNLLG-FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTP 344 (929)
T ss_pred hhcccccCCchHHHHHHcCChhHHHHHHH-cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCc
Confidence 46678999999999999999999999998 899999999999999999999999999999997 3335788899999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||.|+..||..++++||++||
T Consensus 345 LHlaa~~gH~~v~qlLl~~GA 365 (929)
T KOG0510|consen 345 LHLAAKSGHDRVVQLLLNKGA 365 (929)
T ss_pred hhhhhhcCHHHHHHHHHhcCh
Confidence 999999999999999999997
No 95
>KOG0514|consensus
Probab=99.47 E-value=6.6e-14 Score=122.38 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=97.1
Q ss_pred hhHHHHHHHhhhcccccchhhhhhhcccccccCCCccccCCCCCccceeecccC-----CcccCCCCCcHHHHHHc----
Q psy630 194 KAMSKYIALLNEVDASWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMIND-----ESQLDDNEKNIYEWAKE---- 264 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~a~~---- 264 (347)
.....+.+.|+.+++..-+= .-.-.+.+.....+-..+-+..+|++.+.| .++++..|.|++..++.
T Consensus 240 e~V~~~l~~f~als~~lL~y----vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk 315 (452)
T KOG0514|consen 240 EQVEDYLAYFEALSPPLLEY----VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLK 315 (452)
T ss_pred HHHHHHHHHHHhcChHHHHH----HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhc
Confidence 44567778887776643210 001111222223333334444455555443 56667778887776542
Q ss_pred -CChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy630 265 -GKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 342 (347)
Q Consensus 265 -~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~L 342 (347)
.....++.-|.. -.++|++- ..|+|+|++|+.+|+.++|+.||. ||||||.+|.+|.|+|+.||..||.+||++|
T Consensus 316 ~~~d~~vV~~LF~--mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklL 392 (452)
T KOG0514|consen 316 QPADRTVVERLFK--MGDVNAKASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLL 392 (452)
T ss_pred chhhHHHHHHHHh--ccCcchhhhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence 223344444544 34667764 479999999999999999999999 8999999999999999999999999999999
Q ss_pred HhC
Q psy630 343 VNS 345 (347)
Q Consensus 343 l~~ 345 (347)
|..
T Consensus 393 LA~ 395 (452)
T KOG0514|consen 393 LAV 395 (452)
T ss_pred hcc
Confidence 864
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.2e-13 Score=114.28 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=71.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
...+|||+||++.+|+++|+++|+.||+|..|+|+++. ..+|||||+|.++++++.|+.++|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999884 455899999999999999999999999999999987665
Q ss_pred c
Q psy630 87 H 87 (347)
Q Consensus 87 ~ 87 (347)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 97
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.46 E-value=2.6e-13 Score=136.28 Aligned_cols=100 Identities=25% Similarity=0.307 Sum_probs=80.8
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC-HHHHHHHHhhcCCCccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-LKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
.+.+..+..|.||||+|+..+...++++|++ .|++++..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+
T Consensus 366 adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~ 443 (682)
T PHA02876 366 ANVNARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLS 443 (682)
T ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCC
Confidence 3566677788888888887777778888877 778888888888888888876555 456788888 6899999999999
Q ss_pred cHHHHHHHcC-CHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIE-HTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~-~~~~v~~Ll~~GA 347 (347)
||||+|+..| +.+++++|+++||
T Consensus 444 TpLh~Aa~~~~~~~iv~lLl~~Ga 467 (682)
T PHA02876 444 TPLHYACKKNCKLDVIEMLLDNGA 467 (682)
T ss_pred hHHHHHHHhCCcHHHHHHHHHCCC
Confidence 9999999876 6899999999886
No 98
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.46 E-value=2.3e-13 Score=138.80 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=76.1
Q ss_pred CcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCC
Q psy630 256 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 335 (347)
Q Consensus 256 ~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~ 335 (347)
.+.++.|+..+...+++.|+. .|+++|..|..|+||||+||.+|+.+++++|++ +|+++|.+|.+|+||||+|+..|+
T Consensus 526 ~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d~~G~TpL~~A~~~g~ 603 (823)
T PLN03192 526 ASNLLTVASTGNAALLEELLK-AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDANGNTALWNAISAKH 603 (823)
T ss_pred hhHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHHhCC
Confidence 344444444455556666666 699999999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q psy630 336 TDLIEYLVNSGS 347 (347)
Q Consensus 336 ~~~v~~Ll~~GA 347 (347)
.+++++|++.|+
T Consensus 604 ~~iv~~L~~~~~ 615 (823)
T PLN03192 604 HKIFRILYHFAS 615 (823)
T ss_pred HHHHHHHHhcCc
Confidence 888888877653
No 99
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=2.3e-13 Score=123.84 Aligned_cols=82 Identities=30% Similarity=0.645 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC--ccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG--SRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~v~~ 83 (347)
..++|||+|||+++|+++|+++|++||.|..++|++++.+++++|||||+|.+.++|++|++. ++..+.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999985 9988876 6888887
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 76543
No 100
>KOG0514|consensus
Probab=99.45 E-value=1.9e-13 Score=119.51 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=86.8
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
..-|.|+|..|...+..++++.|+. .|+++|.+|.+|.|+|++||.+||.+|+++||...++|+...|.+|.|+|.+|.
T Consensus 337 sQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl 415 (452)
T KOG0514|consen 337 SQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL 415 (452)
T ss_pred hhhcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence 4568999999999999999999999 999999999999999999999999999999999889999999999999999999
Q ss_pred HcCCHHHHHHHHh
Q psy630 332 AIEHTDLIEYLVN 344 (347)
Q Consensus 332 ~~~~~~~v~~Ll~ 344 (347)
..||.+|.-+|..
T Consensus 416 eagh~eIa~mlYa 428 (452)
T KOG0514|consen 416 EAGHREIAVMLYA 428 (452)
T ss_pred hcCchHHHHHHHH
Confidence 9999999888754
No 101
>KOG4207|consensus
Probab=99.45 E-value=9.7e-14 Score=111.85 Aligned_cols=85 Identities=27% Similarity=0.552 Sum_probs=80.3
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
.++++.+.+|-|-||.+.++-++|+.+|++||.|-.|.|++|+.|+.++|||||.|....+|+.|+.. +|.+++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 35778899999999999999999999999999999999999999999999999999999999999986 99999999999
Q ss_pred ccCCCc
Q psy630 81 IQPSDS 86 (347)
Q Consensus 81 v~~~~~ 86 (347)
|+.|..
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 997754
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=6.4e-13 Score=118.38 Aligned_cols=128 Identities=24% Similarity=0.452 Sum_probs=105.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
.++|||+|||+++++++|+++|.+||.|..+.+..++.+|.++|||||+|.+.+.+..|+.. ++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999998999999999999999999999986 99999999999998542
Q ss_pred ----ccccch-------------hhhhhcccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 87 ----HNRMAE-------------NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 87 ----~~~~~~-------------~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
+..... ...........++.+++.......+...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 221110 0011122356788899999999999999999999865444443
No 103
>KOG4177|consensus
Probab=99.44 E-value=1.8e-13 Score=137.93 Aligned_cols=94 Identities=28% Similarity=0.349 Sum_probs=85.5
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
...+.+++|.+..-+...+.+.+.. .|++++.++..|.||||.||..|+..+|++||+ +|+++++++..|+||||.||
T Consensus 504 ~~~~l~~lhla~~~~~v~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa 581 (1143)
T KOG4177|consen 504 AKKGLTPLHLAADEDTVKVAKILLE-HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAA 581 (1143)
T ss_pred chhccchhhhhhhhhhHHHHHHHhh-cCCceehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHH
Confidence 3556778888777777777777777 799999999999999999999999999999999 79999999999999999999
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..|+.+|+.+|+++||
T Consensus 582 ~~G~~~i~~LLlk~GA 597 (1143)
T KOG4177|consen 582 QQGHNDIAELLLKHGA 597 (1143)
T ss_pred HcChHHHHHHHHHcCC
Confidence 9999999999999997
No 104
>PHA02917 ankyrin-like protein; Provisional
Probab=99.43 E-value=5.3e-13 Score=131.87 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=86.0
Q ss_pred cccCCcccCCCCCcHHHHH--HcCChHHHHHHHhhcCCCCccccCC---CC-----------chHHHHHHH---------
Q psy630 244 MINDESQLDDNEKNIYEWA--KEGKLDMLVKQLTKLKDFNINQLDE---NG-----------LNCLHWACD--------- 298 (347)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~a--~~~~~~~~~~lL~~~~~~~~~~~d~---~g-----------~tpLh~A~~--------- 298 (347)
...+++..|..|.|+||.+ +..++.+++++|++ .|+++|..|. .| .||||+|+.
T Consensus 125 ~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~ 203 (661)
T PHA02917 125 HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDT 203 (661)
T ss_pred cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCccccccccccccccccccccccccHHHHHHhhcccccccc
Confidence 4457888889999999843 45778899999999 8999987653 34 599999986
Q ss_pred --cCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCH--HHHHHHHhCCC
Q psy630 299 --RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT--DLIEYLVNSGS 347 (347)
Q Consensus 299 --~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~--~~v~~Ll~~GA 347 (347)
+++.+++++|++ +|+++|.+|..|.||||+|+..|+. ++|++|++ ||
T Consensus 204 ~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~ 254 (661)
T PHA02917 204 RAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI 254 (661)
T ss_pred cccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence 568999999999 7999999999999999999999985 79999985 64
No 105
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.42 E-value=8.1e-13 Score=132.70 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCcccCCCCCcHHHHHHc-CChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKE-GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~-~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+.+..+..|.|+||+|+. ++...++.+|.. .|+++|.+|..|.||||+|+..|+.+++++|++ +|++++..+..|.|
T Consensus 333 din~~d~~g~TpLh~A~~~~~~~~iv~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T 410 (682)
T PHA02876 333 DVNAADRLYITPLHQASTLDRNKDIVITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGT 410 (682)
T ss_pred CCCCcccCCCcHHHHHHHhCCcHHHHHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCc
Confidence 344445555555555543 334445555554 455555555555555555555555555555555 45555555555555
Q ss_pred HHHHHHHcCC-HHHHHHHHhCCC
Q psy630 326 GLDYAKAIEH-TDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~-~~~v~~Ll~~GA 347 (347)
|||+|+..++ ..++++|+++||
T Consensus 411 ~Lh~A~~~~~~~~~vk~Ll~~ga 433 (682)
T PHA02876 411 ALHFALCGTNPYMSVKTLIDRGA 433 (682)
T ss_pred hHHHHHHcCCHHHHHHHHHhCCC
Confidence 5555554433 344555555554
No 106
>KOG0505|consensus
Probab=99.42 E-value=2.4e-13 Score=124.65 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=21.7
Q ss_pred cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 312 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 312 ~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+|.+++.+|.+||||||.|+.-|..+++++|+++||
T Consensus 220 ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga 255 (527)
T KOG0505|consen 220 AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA 255 (527)
T ss_pred hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence 455566666666666666666666666666666554
No 107
>KOG0508|consensus
Probab=99.42 E-value=2.4e-13 Score=122.59 Aligned_cols=93 Identities=27% Similarity=0.331 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~ 332 (347)
-.|.++|-+|...++.+++++|+. .++++|.......|||-.||.-||++++++|++ +|+|++..|..|.|.||+||.
T Consensus 82 IegappLWaAsaAGHl~vVk~L~~-~ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~y 159 (615)
T KOG0508|consen 82 IEGAPPLWAASAAGHLEVVKLLLR-RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACY 159 (615)
T ss_pred cCCCchhhHHhccCcHHHHHHHHH-hcCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeec
Confidence 467788888888888889999999 789999999999999999999999999999998 799999999999999999999
Q ss_pred cCCHHHHHHHHhCCC
Q psy630 333 IEHTDLIEYLVNSGS 347 (347)
Q Consensus 333 ~~~~~~v~~Ll~~GA 347 (347)
.||.+|+++|++.||
T Consensus 160 kGh~~I~qyLle~gA 174 (615)
T KOG0508|consen 160 KGHVDIAQYLLEQGA 174 (615)
T ss_pred cCchHHHHHHHHhCC
Confidence 999999999999997
No 108
>PHA02917 ankyrin-like protein; Provisional
Probab=99.41 E-value=1.3e-12 Score=129.17 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=85.8
Q ss_pred CcccCCCCCcHHHHHHcCC-----------------------hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHH
Q psy630 248 ESQLDDNEKNIYEWAKEGK-----------------------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKV 304 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~-----------------------~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~ 304 (347)
....+..|.||||.|+.+. ...++++|+. +|+++|.+|..|+||||+|+..++.++
T Consensus 389 ~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~~~~~ 467 (661)
T PHA02917 389 AVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP-YLKDINMIDKRGETLLHKAVRYNKQSL 467 (661)
T ss_pred ccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcCCHHH
Confidence 3444567999999876432 2346688888 899999999999999999999999999
Q ss_pred HHHHHhhcCCCccccCCCCCcHHHHHHH-cCCHHHHHHHHhCCC
Q psy630 305 VQHLIEKCGADVNVTDSDGDYGLDYAKA-IEHTDLIEYLVNSGS 347 (347)
Q Consensus 305 v~~Ll~~~ga~i~~~d~~g~TpLh~A~~-~~~~~~v~~Ll~~GA 347 (347)
+++|++ +|+++|.+|..|.||||+|+. .++.+++++|+.+||
T Consensus 468 v~~Ll~-~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga 510 (661)
T PHA02917 468 VSLLLE-SGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKP 510 (661)
T ss_pred HHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCC
Confidence 999999 799999999999999999996 789999999999986
No 109
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.41 E-value=9.3e-13 Score=130.82 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=76.9
Q ss_pred HHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHH
Q psy630 258 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTD 337 (347)
Q Consensus 258 ~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~ 337 (347)
++++|..|+.. ++++|+. .|+++|.+|..|+||||+||.+|+.+++++||+ +|++++.+|..|.||||+|+..|+.+
T Consensus 86 L~~aa~~G~~~-~vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 86 LCQLAASGDAV-GARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHcCCHH-HHHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 55666666665 5666666 699999999999999999999999999999999 79999999999999999999999999
Q ss_pred HHHHHHhC
Q psy630 338 LIEYLVNS 345 (347)
Q Consensus 338 ~v~~Ll~~ 345 (347)
++++|+.+
T Consensus 163 iv~~Ll~~ 170 (664)
T PTZ00322 163 VVQLLSRH 170 (664)
T ss_pred HHHHHHhC
Confidence 99999988
No 110
>PHA02798 ankyrin-like protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=126.63 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=89.9
Q ss_pred ccCCcccCCCCCcHHHHHHcCC---hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC---HHHHHHHHhhcCCCccc
Q psy630 245 INDESQLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCGADVNV 318 (347)
Q Consensus 245 ~~~~~~~~~~~~~~l~~a~~~~---~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~ga~i~~ 318 (347)
..+.+..+..|.||||+|+.++ ..+++++|++ .|++++.+|..|.||||+|+..++ .+++++|++ .|++++.
T Consensus 99 GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~-~gadin~ 176 (489)
T PHA02798 99 GADINKKNSDGETPLYCLLSNGYINNLEILLFMIE-NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE-KGVDINT 176 (489)
T ss_pred CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH-hCCCccc
Confidence 3467888899999999998764 6788898888 899999999999999999999998 999999999 6999999
Q ss_pred cC-CCCCcHHHHHHHc----CCHHHHHHHHhCCC
Q psy630 319 TD-SDGDYGLDYAKAI----EHTDLIEYLVNSGS 347 (347)
Q Consensus 319 ~d-~~g~TpLh~A~~~----~~~~~v~~Ll~~GA 347 (347)
++ ..|.||||.++.. ++.+++++|+++||
T Consensus 177 ~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga 210 (489)
T PHA02798 177 HNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF 210 (489)
T ss_pred ccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence 85 5799999998764 47999999999996
No 111
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.41 E-value=9.9e-13 Score=127.14 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=87.4
Q ss_pred cccCCcccCCCCCcHHHHHHcC---ChHHHHHHHhhcCCCCc-cccCCCCchHHHHHHHc--CCHHHHHHHHhhcCCCcc
Q psy630 244 MINDESQLDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNI-NQLDENGLNCLHWACDR--GHLKVVQHLIEKCGADVN 317 (347)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~lL~~~~~~~~-~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~~ga~i~ 317 (347)
...+.+..+..|.||||.|... +..+++++|++ .|+++ +.+|..|+||||+|+.. ++.+++++|++ +|++++
T Consensus 97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~ 174 (494)
T PHA02989 97 FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLF 174 (494)
T ss_pred CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcc
Confidence 3446778888999999976543 46778999998 89999 78999999999998754 68999999999 799999
Q ss_pred c-cCCCCCcHHHHHHHcC----CHHHHHHHHhCCC
Q psy630 318 V-TDSDGDYGLDYAKAIE----HTDLIEYLVNSGS 347 (347)
Q Consensus 318 ~-~d~~g~TpLh~A~~~~----~~~~v~~Ll~~GA 347 (347)
. .+..|.||||+|+..+ +.+++++|+++||
T Consensus 175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga 209 (494)
T PHA02989 175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV 209 (494)
T ss_pred ccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence 9 6889999999998764 8999999999997
No 112
>PHA02795 ankyrin-like protein; Provisional
Probab=99.41 E-value=9.6e-13 Score=121.87 Aligned_cols=92 Identities=17% Similarity=0.089 Sum_probs=81.3
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCcc-cc-----CCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNIN-QL-----DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~-~~-----d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.+.+++|.|+..+..+++++|+. .|++.+ .. +..|.|++|.|+.+++.+++++|+. +||++|.+|..|.|||
T Consensus 148 ~~~t~lh~A~~~~~~eIVk~Lls-~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpL 225 (437)
T PHA02795 148 ECLNAYFRGICKKESSVVEFILN-CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLL 225 (437)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHh-cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHH
Confidence 34789999999888999999999 676432 22 1347899999999999999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 226 h~Aa~~g~~eiVelLL~~GA 245 (437)
T PHA02795 226 YRAIYAGYIDLVSWLLENGA 245 (437)
T ss_pred HHHHHcCCHHHHHHHHHCCC
Confidence 99999999999999999997
No 113
>KOG0107|consensus
Probab=99.40 E-value=5.6e-13 Score=104.87 Aligned_cols=77 Identities=29% Similarity=0.502 Sum_probs=69.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
-.++||||||+..+++.+|+..|..||.+..|.|.+++ .|||||+|++..+|+.|+.. +|..|.|..++|..+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46899999999999999999999999999999997654 69999999999999999985 9999999999998776
Q ss_pred ccc
Q psy630 86 SHN 88 (347)
Q Consensus 86 ~~~ 88 (347)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 544
No 114
>KOG0147|consensus
Probab=99.38 E-value=7.2e-14 Score=127.99 Aligned_cols=159 Identities=20% Similarity=0.281 Sum_probs=129.2
Q ss_pred CCccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccc
Q psy630 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLS 80 (347)
Q Consensus 1 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 80 (347)
+++..++.|++|+-.|+...+..+|.++|+.+|.|..|+++.|+.++.++|.|||+|.+.+++..|+.+.|..+.|.+|.
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~ 251 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVI 251 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeE
Confidence 35566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccchhhhhhccc-------ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHH
Q psy630 81 IQPSDSHNRMAENMEDRFNQ-------ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 153 (347)
Q Consensus 81 v~~~~~~~~~~~~~~~~f~~-------~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~ 153 (347)
|+.....+.+.......+.. ..+||+||...+++++++..|..||.|.......+.- .|+.|+.++-+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~-----tG~skgfGfi~ 326 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE-----TGRSKGFGFIT 326 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccc-----cccccCcceEE
Confidence 99887755544333333321 2379999999999999999999999999877766531 45555555544
Q ss_pred cCCCCHHHHHHHH
Q psy630 154 LGQMAKSEAMSKY 166 (347)
Q Consensus 154 ~~~~~~~eA~~~y 166 (347)
.-..+.|+++.
T Consensus 327 --f~~~~~ar~a~ 337 (549)
T KOG0147|consen 327 --FVNKEDARKAL 337 (549)
T ss_pred --EecHHHHHHHH
Confidence 33456666553
No 115
>PHA02730 ankyrin-like protein; Provisional
Probab=99.38 E-value=2.1e-12 Score=125.29 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCcccCCCCCcHHHH---HHcCC---------hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCC
Q psy630 247 DESQLDDNEKNIYEW---AKEGK---------LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGA 314 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~---a~~~~---------~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga 314 (347)
+.+..+..|.|+||. +...+ ...++++|+. .|+++|.+|..|.||||+|+..++.+++++|++ +||
T Consensus 409 dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~-~GA 486 (672)
T PHA02730 409 AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE-YGA 486 (672)
T ss_pred cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHH-CCC
Confidence 456677889999984 33221 2246888988 899999999999999999999999999999999 799
Q ss_pred CccccCC-CCCcHHHHHHH--cCCHHHHHHHHhCCC
Q psy630 315 DVNVTDS-DGDYGLDYAKA--IEHTDLIEYLVNSGS 347 (347)
Q Consensus 315 ~i~~~d~-~g~TpLh~A~~--~~~~~~v~~Ll~~GA 347 (347)
++|.+|. .|.||||+|+. .++.+++++|+++||
T Consensus 487 dIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga 522 (672)
T PHA02730 487 SVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence 9999997 69999999997 478999999999996
No 116
>PHA02730 ankyrin-like protein; Provisional
Probab=99.38 E-value=2e-12 Score=125.47 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=83.7
Q ss_pred ccCCCCCcHHHHHHcCC---hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcC--CHHHHHHHHhhcCC--CccccCCC
Q psy630 250 QLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG--HLKVVQHLIEKCGA--DVNVTDSD 322 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~---~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~ga--~i~~~d~~ 322 (347)
..|..|.|+||+|+..+ +.+++++|+. .|++++.+|..|+||||+|+..+ +.+++++|++ +|+ +++..+.-
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~-~~~~~~~~~~~~~ 113 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS-SYSNASNELTSNI 113 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh-cCCCCCccccccc
Confidence 56778999999998876 4789999998 89999999999999999999976 7999999998 765 55888888
Q ss_pred CCcHHHHHHH--cCCHHHHHHHHhC
Q psy630 323 GDYGLDYAKA--IEHTDLIEYLVNS 345 (347)
Q Consensus 323 g~TpLh~A~~--~~~~~~v~~Ll~~ 345 (347)
+.+|||.++. .++.+++++|+..
T Consensus 114 ~d~~l~~y~~s~n~~~~~vk~Li~~ 138 (672)
T PHA02730 114 NDFDLYSYMSSDNIDLRLLKYLIVD 138 (672)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHh
Confidence 9999999999 8999999999963
No 117
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.1e-12 Score=89.95 Aligned_cols=71 Identities=38% Similarity=0.709 Sum_probs=65.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+|||+|||+.++.++|+++|++||.+..+.+..++ +.++|+|||+|.+.+.|+.|+.. ++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 77899999999999999999985 8899999888763
No 118
>KOG4206|consensus
Probab=99.37 E-value=4.2e-12 Score=104.58 Aligned_cols=133 Identities=19% Similarity=0.318 Sum_probs=104.9
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHH----HHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKK----FFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR 78 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~----~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 78 (347)
+.+...||||.||+..+..++|++ +|++||.|..|...+ |.+.+|-|||.|.+.+.|..|+.. +|..+.|++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 445556999999999999999987 999999999988753 688999999999999999999986 999999999
Q ss_pred ccccCCCcccccchh-------------------------hhh------------------hcccccccccCCcccccch
Q psy630 79 LSIQPSDSHNRMAEN-------------------------MED------------------RFNQACDYLPSLVKKLDSS 115 (347)
Q Consensus 79 l~v~~~~~~~~~~~~-------------------------~~~------------------~f~~~~~~v~~l~~~~~~e 115 (347)
++|++|..+..-... ... .-....+|+.|+|...+.+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 999998775421110 000 1122467899999999999
Q ss_pred hhHHHHhhccccceecccCCCCCc
Q psy630 116 TLLKFYALYKQATVGQCNIDKPSW 139 (347)
Q Consensus 116 ~l~~~f~~fg~v~~g~~~~~~p~~ 139 (347)
.+..+|..|.--.....-..++++
T Consensus 162 ~l~~lf~qf~g~keir~i~~~~~i 185 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPPRSGI 185 (221)
T ss_pred HHHHHHhhCcccceeEeccCCCce
Confidence 999999988877655555555543
No 119
>KOG0505|consensus
Probab=99.36 E-value=9.1e-13 Score=120.83 Aligned_cols=92 Identities=30% Similarity=0.487 Sum_probs=85.0
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~ 332 (347)
...-.++.+++.++...+..+|.. +++++..+.+|.|+||-+|.-.+.+||.+|++ +|++||.+|..||||||.|+.
T Consensus 39 ~~sa~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~d~e~wtPlhaaas 115 (527)
T KOG0505|consen 39 EDSAVFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQDNEGWTPLHAAAS 115 (527)
T ss_pred CchHHHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHH-hcCCccccccccCCcchhhcc
Confidence 445567778889999998888876 78889999999999999999999999999999 799999999999999999999
Q ss_pred cCCHHHHHHHHhCCC
Q psy630 333 IEHTDLIEYLVNSGS 347 (347)
Q Consensus 333 ~~~~~~v~~Ll~~GA 347 (347)
+||..++++|+++||
T Consensus 116 cg~~~i~~~li~~gA 130 (527)
T KOG0505|consen 116 CGYLNIVEYLIQHGA 130 (527)
T ss_pred cccHHHHHHHHHhhh
Confidence 999999999999997
No 120
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.36 E-value=1e-11 Score=96.35 Aligned_cols=93 Identities=32% Similarity=0.483 Sum_probs=68.2
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
+..|.+++|+|+..+...+++.|.. .+.+.+..+..|.||||+|+..+..+++++|+. .|++++..+..|.||+|+|+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~ 81 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAA 81 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHH
Confidence 3556777777777776677777776 566666777777777777777777777777777 57777777777777777777
Q ss_pred HcCCHHHHHHHHhCC
Q psy630 332 AIEHTDLIEYLVNSG 346 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~G 346 (347)
..++.+++++|+++|
T Consensus 82 ~~~~~~~~~~L~~~~ 96 (126)
T cd00204 82 RNGNLDVVKLLLKHG 96 (126)
T ss_pred HcCcHHHHHHHHHcC
Confidence 777777777777654
No 121
>KOG0111|consensus
Probab=99.35 E-value=4.1e-13 Score=109.21 Aligned_cols=84 Identities=23% Similarity=0.441 Sum_probs=79.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
..+.|+||||+|...+++.-|...|-+||.|..|+++.|..+++.||||||+|...++|.+|+.. |...+.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999985 99999999999999
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+.|..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98854
No 122
>KOG0114|consensus
Probab=99.35 E-value=2.8e-12 Score=92.02 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=72.2
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
++...+-|||+|||+++|.++..++|.+||.|..|+|-..+ .-+|.|||.|.+..+|.+|+.. +|..+.++.+.|.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 35567889999999999999999999999999999995443 4579999999999999999985 9999999999998
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
+.++..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877643
No 123
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=4.5e-12 Score=87.93 Aligned_cols=70 Identities=40% Similarity=0.756 Sum_probs=64.7
Q ss_pred EeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 13 VGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 13 V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+.. ++..+.|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999999887899999999999999999999985 8888999888763
No 124
>KOG1710|consensus
Probab=99.33 E-value=4.4e-12 Score=107.74 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=91.3
Q ss_pred ccCCCCCccceeecccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccc-cCCCCchHHHHHHHcCCHHHHHHHH
Q psy630 231 NEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ-LDENGLNCLHWACDRGHLKVVQHLI 309 (347)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll 309 (347)
.....++...+.+.....+.+|+.|+++|..|+..+..+++++|++ .|+|+|. ++..+.||||+||..|+.+++++|+
T Consensus 21 ~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll 99 (396)
T KOG1710|consen 21 DKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL 99 (396)
T ss_pred ccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHHHHcCCchHHHHHH
Confidence 3445555555655556688899999998877776666668888888 7999987 4667899999999999999999999
Q ss_pred hhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy630 310 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLV 343 (347)
Q Consensus 310 ~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll 343 (347)
+ .|+.....++-|+|+-.+|+..|+.+||.++-
T Consensus 100 d-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN 132 (396)
T KOG1710|consen 100 D-AGARMYLVNSVGRTAAQMAAFVGHHECVAIIN 132 (396)
T ss_pred h-ccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence 9 89999999999999999999999999987653
No 125
>KOG0507|consensus
Probab=99.32 E-value=1.6e-12 Score=123.52 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=92.0
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
...+..|..|.|++|.|+..+...+.++|++ +.+-++..|..|.+|||+|+++|+.+++++||. .+..+|+.+..|.|
T Consensus 40 ds~n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~-q~d~~na~~~e~~t 117 (854)
T KOG0507|consen 40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLL-QTDILNAVNIENET 117 (854)
T ss_pred ccccccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhhhccCcceEEehhhcCcchHHHHHHh-cccCCCcccccCcC
Confidence 3467778899999999999999999999998 788888999999999999999999999999998 68999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||.|++.||.+++.|||++||
T Consensus 118 plhlaaqhgh~dvv~~Ll~~~a 139 (854)
T KOG0507|consen 118 PLHLAAQHGHLEVVFYLLKKNA 139 (854)
T ss_pred ccchhhhhcchHHHHHHHhcCC
Confidence 9999999999999999999986
No 126
>KOG0148|consensus
Probab=99.28 E-value=8.5e-12 Score=104.78 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=70.3
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+..+.++|||||++..+|++++++.|++||+|.+|++.+++ ||+||.|.+.|+|..||.. |+..+.|+.+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 34667899999999999999999999999999999998774 8999999999999999986 9999999999998
Q ss_pred CCCc
Q psy630 83 PSDS 86 (347)
Q Consensus 83 ~~~~ 86 (347)
|-..
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 7654
No 127
>PHA02792 ankyrin-like protein; Provisional
Probab=99.28 E-value=9.8e-12 Score=119.50 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=80.6
Q ss_pred cCCcccCCC--CCcHHHHHHcCChHH---HHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC
Q psy630 246 NDESQLDDN--EKNIYEWAKEGKLDM---LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 320 (347)
Q Consensus 246 ~~~~~~~~~--~~~~l~~a~~~~~~~---~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d 320 (347)
.+.+..+.. +.+++|+|+.+.... ++++|.. .|+++|.+|..|.||||+|+..++.+++++|++ +|+++|.+|
T Consensus 363 ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD 440 (631)
T PHA02792 363 NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITT 440 (631)
T ss_pred CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcC
Confidence 355556555 458888887766553 4666677 799999999999999999999999999999999 799999999
Q ss_pred CCCCcHHHHHHH--c-C-------CHHHHHHHHhCCC
Q psy630 321 SDGDYGLDYAKA--I-E-------HTDLIEYLVNSGS 347 (347)
Q Consensus 321 ~~g~TpLh~A~~--~-~-------~~~~v~~Ll~~GA 347 (347)
..|.||||+|+. . + ..+++++||++|.
T Consensus 441 ~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p 477 (631)
T PHA02792 441 KYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP 477 (631)
T ss_pred CCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence 999999999976 2 2 2556888888763
No 128
>KOG0195|consensus
Probab=99.28 E-value=1.6e-12 Score=110.57 Aligned_cols=88 Identities=32% Similarity=0.579 Sum_probs=79.8
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCH
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 336 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~ 336 (347)
.++++|++|+...+.-.|.. ...+.|.-|.+|.+||||||..||..+++.||. -|+.+|..+....||||+|+..||.
T Consensus 3 dif~wcregna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~-rgarvn~tnmgddtplhlaaahghr 80 (448)
T KOG0195|consen 3 DIFGWCREGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNMGDDTPLHLAAAHGHR 80 (448)
T ss_pred hhhhhhhcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHh-cccccccccCCCCcchhhhhhcccH
Confidence 47889999998866555655 788999999999999999999999999999999 5999999999999999999999999
Q ss_pred HHHHHHHhCC
Q psy630 337 DLIEYLVNSG 346 (347)
Q Consensus 337 ~~v~~Ll~~G 346 (347)
++|..||+.-
T Consensus 81 divqkll~~k 90 (448)
T KOG0195|consen 81 DIVQKLLSRK 90 (448)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 129
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.27 E-value=3e-11 Score=103.78 Aligned_cols=97 Identities=29% Similarity=0.326 Sum_probs=60.0
Q ss_pred CCcccCCCCCcHHHHHHcCCh-----HHHHHHHhhcCCC---CccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy630 247 DESQLDDNEKNIYEWAKEGKL-----DMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV 318 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~-----~~~~~lL~~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~ 318 (347)
+++..+..|.|++|.|...+. ..++++|+. .++ ..+.+|..|.||||+|+..|+.+++.+|+. .|++++.
T Consensus 98 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~ 175 (235)
T COG0666 98 DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNS 175 (235)
T ss_pred CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHh-cCCCCcc
Confidence 445566666666666666555 555666555 444 444446666666666666666666666666 5666666
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy630 319 TDSDGDYGLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 319 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 345 (347)
.+..|.|+||+|+..++.+++..|+..
T Consensus 176 ~~~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 176 RNSYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred cccCCCcchhhhcccchHHHHHHHHhc
Confidence 666666666666666666666666554
No 130
>KOG1710|consensus
Probab=99.27 E-value=4.6e-12 Score=107.66 Aligned_cols=95 Identities=27% Similarity=0.369 Sum_probs=85.3
Q ss_pred ccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc-CCCCCcHHH
Q psy630 250 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT-DSDGDYGLD 328 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~-d~~g~TpLh 328 (347)
++|.....+|.+...++......+|.. -.++|.+|..|+|||..|+..|+.++|++||+ .|+|||.. +..+.||||
T Consensus 8 qld~~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLm 84 (396)
T KOG1710|consen 8 QLDAPKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLM 84 (396)
T ss_pred cccchhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHH
Confidence 345666788888899999988888766 55689999999999999999999999999999 79999986 667999999
Q ss_pred HHHHcCCHHHHHHHHhCCC
Q psy630 329 YAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+..|+.++.++||+.||
T Consensus 85 FAALSGn~dvcrllldaGa 103 (396)
T KOG1710|consen 85 FAALSGNQDVCRLLLDAGA 103 (396)
T ss_pred HHHHcCCchHHHHHHhccC
Confidence 9999999999999999997
No 131
>KOG0108|consensus
Probab=99.27 E-value=8.5e-12 Score=115.24 Aligned_cols=81 Identities=27% Similarity=0.654 Sum_probs=77.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.+.+|++. |+..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8899999999999999999999999999999999999999999999999999999999996 999999999999998775
Q ss_pred cc
Q psy630 88 NR 89 (347)
Q Consensus 88 ~~ 89 (347)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 132
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=3.7e-11 Score=84.05 Aligned_cols=72 Identities=36% Similarity=0.738 Sum_probs=65.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+|+|+|||+.+++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|+.. ++..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987753 7789999999999999999986 8888999988775
No 133
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.26 E-value=1.9e-11 Score=80.54 Aligned_cols=54 Identities=30% Similarity=0.503 Sum_probs=45.2
Q ss_pred CCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy630 255 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI 309 (347)
Q Consensus 255 ~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 309 (347)
|+|++|+|+..+..+++++|.+ .+.++|.+|..|+||||+|+.+|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 5799999999999999999998 69999999999999999999999999999986
No 134
>KOG0130|consensus
Probab=99.25 E-value=8.6e-12 Score=93.83 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=73.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
-|||.++-...+++++.+.|..||+|..+.+..|+.||..+|||.|+|.+.+.|++|+.. |+..+.|+.+.|.|+-.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999986 99999999999987643
No 135
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.24 E-value=2.2e-11 Score=89.25 Aligned_cols=64 Identities=36% Similarity=0.561 Sum_probs=58.1
Q ss_pred CCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC
Q psy630 255 EKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 320 (347)
Q Consensus 255 ~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d 320 (347)
+.+++|+|+..+..+++++|.+ .+++++.+|..|+||||+|+.+|+.+++++|++ +|++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEIVKLLLE-HGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHH-TTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC
Confidence 7789999999999999999999 899999999999999999999999999999999 699999875
No 136
>KOG4211|consensus
Probab=99.24 E-value=1.6e-11 Score=111.41 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=116.6
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 81 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 81 (347)
++......-|-+++|||++|+++|++||+.++ |..+.+.+ .+|++.|-|||+|.+.+++++|++.+...+..|.|.|
T Consensus 4 ~~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 4 ENEGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ccCCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 44455566777889999999999999999997 77765554 4699999999999999999999999999999999999
Q ss_pred cCCCccccc--chhh--hhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCC
Q psy630 82 QPSDSHNRM--AENM--EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM 157 (347)
Q Consensus 82 ~~~~~~~~~--~~~~--~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~ 157 (347)
-.+.+.... .... ...-..-.|.+++||..+++++|.+||+..-.++.+...+ .+..+|.-.+|++++..+
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~-----~d~rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLP-----MDQRGRPTGEAFVQFESQ 155 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeee-----ccCCCCcccceEEEecCH
Confidence 876543210 0000 0112335778999999999999999999877766533222 234667777888886654
Q ss_pred -CHHHHHHHHHHHH
Q psy630 158 -AKSEAMSKYIALL 170 (347)
Q Consensus 158 -~~~eA~~~yi~~~ 170 (347)
..+.|+.+..+.+
T Consensus 156 e~ae~Al~rhre~i 169 (510)
T KOG4211|consen 156 ESAEIALGRHRENI 169 (510)
T ss_pred HHHHHHHHHHHHhh
Confidence 3344444443333
No 137
>KOG0144|consensus
Probab=99.23 E-value=6.8e-12 Score=111.77 Aligned_cols=84 Identities=30% Similarity=0.568 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CC-CccCC--cccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DS-HVLEG--SRLSIQ 82 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g--~~l~v~ 82 (347)
+.++||||-|++.+||.+++++|++||.|.+|+|+++.. +.+||||||.|.+.+-|..|++. |+ ..+.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 467899999999999999999999999999999999985 99999999999999999999985 54 34544 689999
Q ss_pred CCCcccccc
Q psy630 83 PSDSHNRMA 91 (347)
Q Consensus 83 ~~~~~~~~~ 91 (347)
++++++.+.
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 999877643
No 138
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.23 E-value=4.5e-11 Score=102.69 Aligned_cols=97 Identities=29% Similarity=0.382 Sum_probs=85.3
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC-----HHHHHHHHhhcCC---CccccC
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-----LKVVQHLIEKCGA---DVNVTD 320 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~~ga---~i~~~d 320 (347)
...+....++++.++......++.++.. .+++++.+|..|.||||+|+.+++ .+++++||+ .|+ +.+.+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~ 144 (235)
T COG0666 67 AARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRD 144 (235)
T ss_pred ccCCccccCHHHHHHHcCcHHHHHHHHH-cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccC
Confidence 3344567788888887777777777777 799999999999999999999999 999999999 799 666679
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 321 SDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 321 ~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
..|+||||+|+..|+.+++.+|++.||
T Consensus 145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~ 171 (235)
T COG0666 145 EDGNTPLHWAALNGDADIVELLLEAGA 171 (235)
T ss_pred CCCCchhHHHHHcCchHHHHHHHhcCC
Confidence 999999999999999999999999875
No 139
>PHA02792 ankyrin-like protein; Provisional
Probab=99.22 E-value=5e-11 Score=114.67 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=76.1
Q ss_pred CcHHHHHHcCChHHHHHHHhhcCCCCccccCCCC--chHHHHHHHcCCH---HHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 256 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG--LNCLHWACDRGHL---KVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 256 ~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g--~tpLh~A~~~g~~---~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
...++.|+..+..+++++|.. .|++++.+|..| .||||+|+..... +++++|++ +||++|.+|..|+||||+|
T Consensus 340 ~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~A 417 (631)
T PHA02792 340 INKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYC 417 (631)
T ss_pred chHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHH
Confidence 344555565666668888888 799999998875 6999998876654 46888898 7999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..++.+++++|+++||
T Consensus 418 a~~~n~eivelLLs~GA 434 (631)
T PHA02792 418 IESHSVSLVEWLIDNGA 434 (631)
T ss_pred HHcCCHHHHHHHHHCCC
Confidence 99999999999999997
No 140
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.20 E-value=6.7e-11 Score=119.95 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=77.4
Q ss_pred eeecccCCcccCCCCCcHHHHHHcCChHH---HHHHHhhcCCCC------ccc----cCCCCchHHHHHHHcCCHHHHHH
Q psy630 241 VSSMINDESQLDDNEKNIYEWAKEGKLDM---LVKQLTKLKDFN------INQ----LDENGLNCLHWACDRGHLKVVQH 307 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~lL~~~~~~~------~~~----~d~~g~tpLh~A~~~g~~~~v~~ 307 (347)
+...+.+....+..|.|+||+|+.++... +..++.. .+.. ++. .+..|.||||+||.+|+.+++++
T Consensus 68 iv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~-~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVkl 146 (743)
T TIGR00870 68 LTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLA-AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKL 146 (743)
T ss_pred HHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhh-cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHH
Confidence 33333333335678899999998855443 3333333 1211 111 23469999999999999999999
Q ss_pred HHhhcCCCccccC--------------CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 308 LIEKCGADVNVTD--------------SDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 308 Ll~~~ga~i~~~d--------------~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+ .|++++.++ ..|.||||+|+..|+.+++++|+++||
T Consensus 147 LL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga 199 (743)
T TIGR00870 147 LLE-RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA 199 (743)
T ss_pred HHh-CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence 999 799999764 258999999999999999999999986
No 141
>KOG0502|consensus
Probab=99.20 E-value=1.7e-11 Score=100.47 Aligned_cols=95 Identities=26% Similarity=0.416 Sum_probs=87.1
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
++..+.....++|..|+.|+...++++|+. .+.++|..|.+|-|||.||+..+|.+||+.||. .||+++..+..|.++
T Consensus 185 dp~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~ 262 (296)
T KOG0502|consen 185 DPDALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWI 262 (296)
T ss_pred ChhhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcH
Confidence 566666777899999999999999999999 899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHh
Q psy630 327 LDYAKAIEHTDLIEYLVN 344 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~ 344 (347)
+..|+..|+. +|+..++
T Consensus 263 mdlAValGyr-~Vqqvie 279 (296)
T KOG0502|consen 263 MDLAVALGYR-IVQQVIE 279 (296)
T ss_pred HHHHHHhhhH-HHHHHHH
Confidence 9999999987 6665554
No 142
>KOG0515|consensus
Probab=99.18 E-value=3.4e-11 Score=110.06 Aligned_cols=96 Identities=25% Similarity=0.247 Sum_probs=84.5
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC-CCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d-~~g~ 324 (347)
.|+.+.++.|-|+||-|..+++..|+++|++ .|+++|..|.+||||||+||.++++.+|+.|++ +|+.|-+.. +++.
T Consensus 574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe-~GaavfAsTlSDme 651 (752)
T KOG0515|consen 574 TDPSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVPMCKQLVE-SGAAVFASTLSDME 651 (752)
T ss_pred cCCCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchHHHHHHHh-ccceEEeeeccccc
Confidence 3677888999999999999999999999999 899999999999999999999999999999999 799887764 4788
Q ss_pred cHHHHH--HHcCCHHHHHHHH
Q psy630 325 YGLDYA--KAIEHTDLIEYLV 343 (347)
Q Consensus 325 TpLh~A--~~~~~~~~v~~Ll 343 (347)
||..-+ ...|...|..||.
T Consensus 652 Ta~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 652 TAAEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred chhhhcchhhhhHHHHHHHHH
Confidence 988766 3457788888874
No 143
>KOG4212|consensus
Probab=99.17 E-value=7.7e-11 Score=105.22 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=103.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFS-EYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
....|.+||.|||+++..++|+++|. +.|+|..|.+..|. +|+++|||.|+|++++.+++|++. |.+.+.||+|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34567799999999999999999995 68999999999997 599999999999999999999996 9999999999997
Q ss_pred CCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 83 PSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
.-.... +.+.....-.....|++++..+.-...+...++--|....++...+.
T Consensus 120 Ed~d~q-~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~ 172 (608)
T KOG4212|consen 120 EDHDEQ-RDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDD 172 (608)
T ss_pred ccCchh-hhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccc
Confidence 543311 11111111223567888898888888888888877777666666653
No 144
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.16 E-value=2.8e-10 Score=88.12 Aligned_cols=93 Identities=31% Similarity=0.441 Sum_probs=84.8
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 328 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh 328 (347)
+..+..|.+++|.|+..+...++++|.. .+..++..+..|.||+|+|+..++.+++++|+. .|.+++..+..|.||||
T Consensus 34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~ 111 (126)
T cd00204 34 NAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLH 111 (126)
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHH
Confidence 5667788899999888888888998888 678888899999999999999999999999999 69999999999999999
Q ss_pred HHHHcCCHHHHHHHH
Q psy630 329 YAKAIEHTDLIEYLV 343 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll 343 (347)
+|...++.+++++|+
T Consensus 112 ~~~~~~~~~~~~~Ll 126 (126)
T cd00204 112 LAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHhcCCHHHHHHhC
Confidence 999999999999885
No 145
>KOG4214|consensus
Probab=99.16 E-value=1.3e-10 Score=82.12 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=69.0
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
..+++|+|+|+..+...+.++|.. .|++++.+|++|.|||.-|++.||.+||++||+ .||+-..+.-+|.+.+..+
T Consensus 32 ~ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~-~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 32 YGGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQ-NGADRTIHAPDGTALIEAT 107 (117)
T ss_pred hCCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHHHHHHHHH-cCcccceeCCCchhHHhhc
Confidence 378999999999999999999998 899999999999999999999999999999999 7999888888887766543
No 146
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.14 E-value=7.9e-11 Score=119.46 Aligned_cols=80 Identities=21% Similarity=0.103 Sum_probs=73.8
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC--------------CCCchHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD--------------ENGLNCLHWACDRGHLKVVQHLIEKCGADVNV 318 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~ 318 (347)
..|.||||.|+..++.+++++|++ .|++++.++ ..|.||||+|+..|+.+++++|++ +|+|+|.
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~ 203 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILT 203 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhh
Confidence 568999999999999999999999 899998653 358999999999999999999999 7999999
Q ss_pred cCCCCCcHHHHHHHcC
Q psy630 319 TDSDGDYGLDYAKAIE 334 (347)
Q Consensus 319 ~d~~g~TpLh~A~~~~ 334 (347)
+|..|+||||+|+..+
T Consensus 204 ~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 204 ADSLGNTLLHLLVMEN 219 (743)
T ss_pred HhhhhhHHHHHHHhhh
Confidence 9999999999999987
No 147
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=3.2e-10 Score=78.94 Aligned_cols=60 Identities=15% Similarity=0.411 Sum_probs=53.6
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeeeCCC--CCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 22 HNELKKFFS----EYGQIMNAS-VMFDKNT--GLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 22 ~~~l~~~f~----~~G~i~~~~-i~~~~~t--~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+++|+++|+ +||.|.++. ++.++.+ +.++|||||+|.+.++|.+|+.. |+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 7777767 89999999999999999999985 999999998875
No 148
>KOG0506|consensus
Probab=99.07 E-value=1.2e-10 Score=105.14 Aligned_cols=88 Identities=28% Similarity=0.436 Sum_probs=83.3
Q ss_pred CcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCC
Q psy630 256 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 335 (347)
Q Consensus 256 ~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~ 335 (347)
..++++|..|++..+.+++++ +.+++.+|.+.+|+||.||..||.+++++||+.++.+++.+|..|+|||.-|...+|
T Consensus 508 i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h 585 (622)
T KOG0506|consen 508 INVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH 585 (622)
T ss_pred hhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence 357788999999999999999 999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHhC
Q psy630 336 TDLIEYLVNS 345 (347)
Q Consensus 336 ~~~v~~Ll~~ 345 (347)
.+++++|-+.
T Consensus 586 ~~v~k~L~~~ 595 (622)
T KOG0506|consen 586 KEVVKLLEEA 595 (622)
T ss_pred HHHHHHHHHH
Confidence 9999999653
No 149
>KOG4205|consensus
Probab=99.05 E-value=2.2e-10 Score=101.57 Aligned_cols=120 Identities=27% Similarity=0.490 Sum_probs=93.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
..++|||++||+++++.+++++|.+||.|..+.++.|..+.+++||+||.|.+.+++++++....+.|+|+.+.|.+|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchhhhhhcccccccccCCcccccchhhHHHHhhccccc
Q psy630 87 HNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQAT 128 (347)
Q Consensus 87 ~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~ 128 (347)
+.......... .......++....+.-.+..+|..|+++.
T Consensus 176 k~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 176 KEVMQSTKSSV--STRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred hhhcccccccc--ccccccccccccccccccchhccccCccc
Confidence 76532110000 01111123333344445666677777664
No 150
>KOG3676|consensus
Probab=99.04 E-value=4.5e-10 Score=108.22 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=79.7
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCcccc--------CC---------------CCchHHHHHHHcCCHHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL--------DE---------------NGLNCLHWACDRGHLKVVQHL 308 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~--------d~---------------~g~tpLh~A~~~g~~~~v~~L 308 (347)
...|.++||.|.......++.+|+. .|+|++++ +. .|..||-+||..++.+|+++|
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL 259 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL 259 (782)
T ss_pred hhcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence 3568899999999888889999888 78888742 11 256799999999999999999
Q ss_pred HhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 309 IEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 309 l~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
++ +|||++++|..|+|.||..+..-..++-.++|++||
T Consensus 260 l~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga 297 (782)
T KOG3676|consen 260 LA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGA 297 (782)
T ss_pred Hh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 98 699999999999999999999888888889998886
No 151
>KOG1457|consensus
Probab=99.02 E-value=1.7e-09 Score=88.59 Aligned_cols=83 Identities=20% Similarity=0.359 Sum_probs=63.9
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEee-eCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC---Ccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMF-DKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE---GSR 78 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~-~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~ 78 (347)
.+...|||||++||-++.-.+|..+|..|-.-..+.+.. ++...-.+-+|||+|.+...|..|+.. ||..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 455689999999999999999999999885555555432 222122358999999999999999986 999996 566
Q ss_pred ccccCCCc
Q psy630 79 LSIQPSDS 86 (347)
Q Consensus 79 l~v~~~~~ 86 (347)
|+|..+.+
T Consensus 110 LhiElAKS 117 (284)
T KOG1457|consen 110 LHIELAKS 117 (284)
T ss_pred eEeeehhc
Confidence 77765543
No 152
>KOG0131|consensus
Probab=99.01 E-value=3.3e-10 Score=89.99 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=75.4
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN-ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++||+||.+.+++..|.+.|+.||.+.. -.|+++..||.++|||||.|.+.+.+.+|+.. |+..+..++++|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344568999999999999999999999998865 48999999999999999999999999999986 9999999999998
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++..+.
T Consensus 173 ya~k~~ 178 (203)
T KOG0131|consen 173 YAFKKD 178 (203)
T ss_pred EEEecC
Confidence 775543
No 153
>KOG0147|consensus
Probab=98.99 E-value=4.8e-10 Score=103.25 Aligned_cols=81 Identities=32% Similarity=0.638 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
+.++||||||-+.+++.+|+..|+.||.|..|.+++|..||.++||+|++|.+.+.|.+|++. ||..+-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 344599999999999999999999999999999999999999999999999999999999885 9999999999987554
Q ss_pred cc
Q psy630 86 SH 87 (347)
Q Consensus 86 ~~ 87 (347)
.+
T Consensus 357 ~r 358 (549)
T KOG0147|consen 357 ER 358 (549)
T ss_pred ee
Confidence 43
No 154
>KOG0705|consensus
Probab=98.99 E-value=9e-10 Score=101.83 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=81.4
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccc--cCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQ--LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY 329 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~ 329 (347)
.+-|..++.+....|+..+.-||.......+|. .+.+|+|+||+||..|++.+.++|+. +|+|+.++|..|+|||.|
T Consensus 622 ~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~y 700 (749)
T KOG0705|consen 622 EPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFY 700 (749)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhh
Confidence 356778888888888887776666533344544 45678999999999999999999998 899999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCC
Q psy630 330 AKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 330 A~~~~~~~~v~~Ll~~GA 347 (347)
|-+.|.-+|+.+||++|.
T Consensus 701 ar~a~sqec~d~llq~gc 718 (749)
T KOG0705|consen 701 ARQAGSQECIDVLLQYGC 718 (749)
T ss_pred HhhcccHHHHHHHHHcCC
Confidence 999999999999999984
No 155
>KOG0507|consensus
Probab=98.98 E-value=2.9e-10 Score=108.36 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=92.8
Q ss_pred CCCCccceeecccC----CcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHH
Q psy630 234 QTKGWVNVSSMIND----ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLI 309 (347)
Q Consensus 234 ~~~~~~~~~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll 309 (347)
+-.|...++..+.+ ....+..|.+++|+|+..+..+++++|+. .+..+|.....|.||||.|+++||.+++.+||
T Consensus 57 ~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~-q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll 135 (854)
T KOG0507|consen 57 VLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLL-QTDILNAVNIENETPLHLAAQHGHLEVVFYLL 135 (854)
T ss_pred HhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHh-cccCCCcccccCcCccchhhhhcchHHHHHHH
Confidence 33444444444443 23456788999999988888888888777 57889999999999999999999999999999
Q ss_pred hhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy630 310 EKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 310 ~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 345 (347)
+ +|+|+-..|.++.|+|.+|++.|..++|.+|++.
T Consensus 136 ~-~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 136 K-KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK 170 (854)
T ss_pred h-cCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence 9 7999999999999999999999999999999874
No 156
>KOG0153|consensus
Probab=98.98 E-value=8.4e-10 Score=96.14 Aligned_cols=75 Identities=28% Similarity=0.539 Sum_probs=68.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc--CCCccCCccccccC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQP 83 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~l~v~~ 83 (347)
...++|||++|-..+++.+|+++|.+||+|.++++...+ ++|||+|.+..+|+.|.+. +..+++|+.|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 445799999999999999999999999999999987643 6999999999999999975 99999999999999
Q ss_pred CCc
Q psy630 84 SDS 86 (347)
Q Consensus 84 ~~~ 86 (347)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 887
No 157
>KOG0146|consensus
Probab=98.97 E-value=9.6e-10 Score=92.38 Aligned_cols=84 Identities=27% Similarity=0.482 Sum_probs=78.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
.+.++|||=.||....+.+|-.+|-.||.|.+.++..|+.|..|++|+||.|++..+++.||.. ||..|+-++|+|+..
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4678999999999999999999999999999999999999999999999999999999999985 999999999999988
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 77653
No 158
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=8.9e-10 Score=73.08 Aligned_cols=55 Identities=27% Similarity=0.578 Sum_probs=48.0
Q ss_pred HHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 25 LKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 25 l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
|+++|++||.|..+.+..++ +++|||+|.+.++|..|+.. |+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987543 58999999999999999985 999999999998753
No 159
>KOG0818|consensus
Probab=98.95 E-value=2.6e-09 Score=97.14 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=76.6
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCC
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 335 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~ 335 (347)
.++..++.++...+.++|.. |+++|..+. .|.||||.|+..|+..-+++|+- +|||+++.|..|.||+.+|-..||
T Consensus 136 QLhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH 212 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGH 212 (669)
T ss_pred HHHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCc
Confidence 45556778888999998888 999999875 69999999999999999999997 899999999999999999999999
Q ss_pred HHHHHHHHh
Q psy630 336 TDLIEYLVN 344 (347)
Q Consensus 336 ~~~v~~Ll~ 344 (347)
.+++.-|++
T Consensus 213 ~~laeRl~e 221 (669)
T KOG0818|consen 213 HELAERLVE 221 (669)
T ss_pred hHHHHHHHH
Confidence 999887765
No 160
>PF13606 Ank_3: Ankyrin repeat
Probab=98.93 E-value=1.2e-09 Score=62.03 Aligned_cols=30 Identities=47% Similarity=0.728 Sum_probs=26.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhcCCCccc
Q psy630 288 NGLNCLHWACDRGHLKVVQHLIEKCGADVNV 318 (347)
Q Consensus 288 ~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~ 318 (347)
+|+||||+||..|+.+++++||+ +|+|||.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLE-HGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC
Confidence 58899999999999999999998 6999874
No 161
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.90 E-value=2.1e-09 Score=62.80 Aligned_cols=33 Identities=42% Similarity=0.763 Sum_probs=30.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 288 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 288 ~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
+|.||||+||..|+.+++++||+ +|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence 58999999999999999999999 7999999874
No 162
>KOG4208|consensus
Probab=98.90 E-value=2.6e-09 Score=86.79 Aligned_cols=78 Identities=22% Similarity=0.422 Sum_probs=69.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcc-CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCCc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEY-GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~~ 86 (347)
.-+||+.+|.-+.+.++..+|.+| |.+..+++.|++.||.|+|||||+|.+.+.|.-|-+ +|...+.|+.|.+..-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 458999999999999999999988 788888999999999999999999999999999887 488888899888776544
No 163
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.86 E-value=2.5e-09 Score=70.83 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=32.1
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHH
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWA 296 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A 296 (347)
.+.+..|..|.|+||+|+..+..+++++|++ .+++++.+|..|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence 4567888999999999999999999999996 9999999999999999997
No 164
>KOG3676|consensus
Probab=98.86 E-value=6.8e-09 Score=100.26 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCC--ccccCCCCCcHHHHHH
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD--VNVTDSDGDYGLDYAK 331 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~--i~~~d~~g~TpLh~A~ 331 (347)
-|..||..|+.-+.++++++|++ .++|++.+|..|+|.||..+.+...++..++|. +|++ ...+|.+|.|||.+|+
T Consensus 239 fGEyPLSfAAC~nq~eivrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAa 316 (782)
T KOG3676|consen 239 FGEYPLSFAACTNQPEIVRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAA 316 (782)
T ss_pred eccCchHHHHHcCCHHHHHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHH
Confidence 46788888888888889999999 899999999999999999999999999999999 7999 9999999999999999
Q ss_pred HcCCHHHHHHHHhC
Q psy630 332 AIEHTDLIEYLVNS 345 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~ 345 (347)
..|..++.+++++.
T Consensus 317 klGk~emf~~ile~ 330 (782)
T KOG3676|consen 317 KLGKKEMFQHILER 330 (782)
T ss_pred HhhhHHHHHHHHHh
Confidence 99999999998875
No 165
>KOG0106|consensus
Probab=98.85 E-value=3e-09 Score=88.71 Aligned_cols=116 Identities=22% Similarity=0.419 Sum_probs=92.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
.++|||+||+.+.+.+++.+|..||.+..+.+. .||+||+|.+..+|..|+.. ++..+.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 579999999999999999999999999888763 47999999999999999985 999999988888877642
Q ss_pred ccc-------------chhhhhhcccccccccCCcccccchhhHHHHhhccccceecc
Q psy630 88 NRM-------------AENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQC 132 (347)
Q Consensus 88 ~~~-------------~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~ 132 (347)
... ............+.|.++.....+.+|.+.|..||++++...
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~ 131 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA 131 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh
Confidence 110 001111223456778888888999999999999999975544
No 166
>KOG0124|consensus
Probab=98.85 E-value=4.1e-09 Score=92.33 Aligned_cols=83 Identities=19% Similarity=0.439 Sum_probs=75.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+.+...+|||..+-++.++++|+..|+.||+|..|++.+++.++..+||+|++|.+..+...|+.. |-..++|+.|+|.
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 345667999999999999999999999999999999999998888999999999999999999974 9999999999998
Q ss_pred CCCc
Q psy630 83 PSDS 86 (347)
Q Consensus 83 ~~~~ 86 (347)
.+-.
T Consensus 286 k~vT 289 (544)
T KOG0124|consen 286 KCVT 289 (544)
T ss_pred cccC
Confidence 6544
No 167
>KOG0415|consensus
Probab=98.84 E-value=3.9e-09 Score=92.08 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~ 85 (347)
+-+-|||=.|.|-+|+++|+-+|+.||.|.+|.|++|+.||.+-.||||+|.+.++.++|.- ++...|.++.|.|.+++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 44679999999999999999999999999999999999999999999999999999999985 58889999999998876
Q ss_pred ccc
Q psy630 86 SHN 88 (347)
Q Consensus 86 ~~~ 88 (347)
+-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 643
No 168
>KOG0783|consensus
Probab=98.83 E-value=1.5e-09 Score=104.29 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=72.8
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
+-.+..|..|++++|.+...+...+++.|++ +|++++.+|. .|+||||-|...|+++++.+||. +|+.+..+|.+|.
T Consensus 43 n~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL~i~Dkegl 120 (1267)
T KOG0783|consen 43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSLRIKDKEGL 120 (1267)
T ss_pred hhhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHh-cCCceEEecccCC
Confidence 3467788889999998888888888888888 6899988886 68999999999999999999998 6999999999999
Q ss_pred cHHHHHHH
Q psy630 325 YGLDYAKA 332 (347)
Q Consensus 325 TpLh~A~~ 332 (347)
.||..-++
T Consensus 121 splq~~~r 128 (1267)
T KOG0783|consen 121 SPLQFLSR 128 (1267)
T ss_pred CHHHHHhh
Confidence 99888766
No 169
>KOG0146|consensus
Probab=98.83 E-value=3.5e-09 Score=89.02 Aligned_cols=83 Identities=27% Similarity=0.502 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C-CCccCC--cccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D-SHVLEG--SRLSIQ 82 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~-~~~~~g--~~l~v~ 82 (347)
+.|+||||-|.+.-.|++++.+|..||.|.+|.+.+... |.++|||||.|.+.-+|+.||.. + ...+.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 678999999999999999999999999999999999875 99999999999999999999974 3 334444 467778
Q ss_pred CCCccccc
Q psy630 83 PSDSHNRM 90 (347)
Q Consensus 83 ~~~~~~~~ 90 (347)
+++..++|
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 87765543
No 170
>KOG0109|consensus
Probab=98.82 E-value=3.7e-09 Score=90.04 Aligned_cols=77 Identities=27% Similarity=0.509 Sum_probs=69.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|+||||.+.++.++|+..|++||+|.+|.|++ +|+||.|...+.|..|++. ++.+|.|+++.|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34667999999999999999999999999999999975 5999999999999999975 99999999999998
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++-+
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 766543
No 171
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.80 E-value=9.7e-09 Score=102.34 Aligned_cols=85 Identities=21% Similarity=0.122 Sum_probs=77.5
Q ss_pred ccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhc-------CCCcc
Q psy630 245 INDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-------GADVN 317 (347)
Q Consensus 245 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~-------ga~i~ 317 (347)
..+.+..|..|.|+||+|+..++..++++|+. .|++++.+|..|.||||+|+..|+.+++++|+. + |++++
T Consensus 105 Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~ga~~~ 182 (664)
T PTZ00322 105 GADPNCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLSR-HSQCHFELGANAK 182 (664)
T ss_pred CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHh-CCCcccccCCCCC
Confidence 34677888999999999999999999999999 799999999999999999999999999999998 7 89999
Q ss_pred ccCCCCCcHHHHHH
Q psy630 318 VTDSDGDYGLDYAK 331 (347)
Q Consensus 318 ~~d~~g~TpLh~A~ 331 (347)
..+..|.+|+..+.
T Consensus 183 ~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 183 PDSFTGKPPSLEDS 196 (664)
T ss_pred ccccCCCCccchhh
Confidence 99998988876554
No 172
>KOG4661|consensus
Probab=98.76 E-value=1.3e-08 Score=94.00 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=74.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
-.|+|||++|+..+...+|+.+|++||.|+..+++++..+.-.++|+||+..+.+.|.+||.. +.+.++|+.|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 357999999999999999999999999999999999987777899999999999999999985 9999999999998765
Q ss_pred c
Q psy630 86 S 86 (347)
Q Consensus 86 ~ 86 (347)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 5
No 173
>KOG0116|consensus
Probab=98.76 E-value=1.6e-08 Score=93.25 Aligned_cols=81 Identities=27% Similarity=0.480 Sum_probs=70.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~ 85 (347)
....+|||+|||++++..+|+++|++||.|....|......++..+||||+|.+..+++.|+..+...++|+++.|....
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34456999999999999999999999999999888765433555599999999999999999999999999999997554
Q ss_pred c
Q psy630 86 S 86 (347)
Q Consensus 86 ~ 86 (347)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 174
>PF13606 Ank_3: Ankyrin repeat
Probab=98.75 E-value=1e-08 Score=58.21 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+||||+||..|+.+++++||++||
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGA 26 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 58999999999999999999999996
No 175
>KOG0110|consensus
Probab=98.72 E-value=1.1e-08 Score=97.09 Aligned_cols=82 Identities=30% Similarity=0.561 Sum_probs=74.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
.++|+|+|||+..+-.+++++|..||.+.+|+|+.-...+.++|||||+|-++.+|..|+.. ..+-+.||.|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57999999999999999999999999999999998755677899999999999999999975 78889999999999987
Q ss_pred ccc
Q psy630 87 HNR 89 (347)
Q Consensus 87 ~~~ 89 (347)
...
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 543
No 176
>KOG4454|consensus
Probab=98.71 E-value=7.1e-09 Score=84.82 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=92.0
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
.+++..++|||+|+...++++.|.++|-+.|+|..|.|+.++. ++.+ ||||.|.++.+..-|+.+ ||..+.++.+.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 3567789999999999999999999999999999999988875 6666 999999999999999997 999999999888
Q ss_pred cCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 82 QPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
++-..... + -+...++.+.+...|+.-+.+.-+.+....
T Consensus 82 ~~r~G~sh-----------a-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~ 120 (267)
T KOG4454|consen 82 TLRCGNSH-----------A-----PLDERVTEEILYEVFSQAGPIEGVRIPTDN 120 (267)
T ss_pred ccccCCCc-----------c-----hhhhhcchhhheeeecccCCCCCccccccc
Confidence 75433211 1 133446667777777777777666655543
No 177
>KOG0522|consensus
Probab=98.71 E-value=4.2e-08 Score=90.47 Aligned_cols=87 Identities=25% Similarity=0.375 Sum_probs=72.4
Q ss_pred cHHHHHH-cCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCC
Q psy630 257 NIYEWAK-EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 335 (347)
Q Consensus 257 ~~l~~a~-~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~ 335 (347)
.++|++. ..+...+.+.|.......++..|..|.||||+|+..||...++.|+. +||++..+|..||+|||-|+..|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~ 100 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGN 100 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCC
Confidence 3455554 45555666655553567789999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHh
Q psy630 336 TDLIEYLVN 344 (347)
Q Consensus 336 ~~~v~~Ll~ 344 (347)
..++..+|.
T Consensus 101 ~q~i~~vlr 109 (560)
T KOG0522|consen 101 EQIITEVLR 109 (560)
T ss_pred HHHHHHHHH
Confidence 988776654
No 178
>KOG4369|consensus
Probab=98.68 E-value=8.4e-09 Score=102.05 Aligned_cols=92 Identities=33% Similarity=0.362 Sum_probs=76.1
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc-CCCCCcHHHHHHH
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT-DSDGDYGLDYAKA 332 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~-d~~g~TpLh~A~~ 332 (347)
.-.+.|..||.|++.+++++|+. .|+++..+|..|.+||.+|+-.||..+|..||+ +.++|.++ |..+.|+|.+||.
T Consensus 756 n~~t~LT~acaggh~e~vellv~-rganiehrdkkgf~plImaatagh~tvV~~llk-~ha~veaQsdrtkdt~lSlacs 833 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVV-RGANIEHRDKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQSDRTKDTMLSLACS 833 (2131)
T ss_pred cccccccccccCccHHHHHHHHH-hcccccccccccchhhhhhcccCchHHHHHHHh-hhhhhhhhcccccCceEEEecC
Confidence 34577888888888888888887 688888888888888888888888888888887 68888876 6678888888888
Q ss_pred cCCHHHHHHHHhCCC
Q psy630 333 IEHTDLIEYLVNSGS 347 (347)
Q Consensus 333 ~~~~~~v~~Ll~~GA 347 (347)
.|++++|++||.+||
T Consensus 834 ggr~~vvelLl~~ga 848 (2131)
T KOG4369|consen 834 GGRTRVVELLLNAGA 848 (2131)
T ss_pred CCcchHHHHHHHhhc
Confidence 888888888888876
No 179
>KOG4212|consensus
Probab=98.67 E-value=2.8e-08 Score=89.10 Aligned_cols=74 Identities=27% Similarity=0.503 Sum_probs=67.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
.++.++|||+|||+++|.+.|++-|..||.|..+.|+. .|+++| .|.|.+++.|++|+.. ++..+.||.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 46678899999999999999999999999999999964 378887 8999999999999997 99999999999865
No 180
>KOG1548|consensus
Probab=98.66 E-value=5.8e-08 Score=84.81 Aligned_cols=164 Identities=17% Similarity=0.255 Sum_probs=112.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN--------ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
.+...+.|||+|||.++|.+++.++|++||.|.. |++.++.. |+.+|=|.+.|-..+++..|+.. ++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455677999999999999999999999997743 78888875 99999999999999999999996 99999
Q ss_pred CCccccccCCCcccc-----------------cchhh--------------hhhcccccccccCCcc--c--cc------
Q psy630 75 EGSRLSIQPSDSHNR-----------------MAENM--------------EDRFNQACDYLPSLVK--K--LD------ 113 (347)
Q Consensus 75 ~g~~l~v~~~~~~~~-----------------~~~~~--------------~~~f~~~~~~v~~l~~--~--~~------ 113 (347)
.|+.|+|++|.-... +.... ...-..+++.++|+-. . -+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 999999997654210 00000 0001125677777632 1 12
Q ss_pred -chhhHHHHhhccccceecccCCCC-CccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccCChhhhhh
Q psy630 114 -SSTLLKFYALYKQATVGQCNIDKP-SWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEE 184 (347)
Q Consensus 114 -~e~l~~~f~~fg~v~~g~~~~~~p-~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~~~~~~~~~~ 184 (347)
.++|++-...||++....+.-..| |...+ ..-+.++|..- ++-|...|.+.++-.
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~hPdGvvtV------------~f~n~eeA~~c----iq~m~GR~fdgRql~ 345 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDRHPDGVVTV------------SFRNNEEADQC----IQTMDGRWFDGRQLT 345 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEeccCCCceeEE------------EeCChHHHHHH----HHHhcCeeecceEEE
Confidence 245667789999998766654444 32222 12234455432 566677888765433
No 181
>KOG0783|consensus
Probab=98.61 E-value=3e-08 Score=95.63 Aligned_cols=77 Identities=26% Similarity=0.238 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 270 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS-DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 270 ~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+.-++....+--+|.+|..|+|+||+|+..+..+++++||+ +|++++.+|. .|+||||-|...|+.+|+-+||.+|+
T Consensus 33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~ 110 (1267)
T KOG0783|consen 33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR 110 (1267)
T ss_pred HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence 45555554444578999999999999999999999999999 6999999998 59999999999999999999999985
No 182
>KOG4209|consensus
Probab=98.59 E-value=5.9e-08 Score=83.06 Aligned_cols=81 Identities=25% Similarity=0.466 Sum_probs=75.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~ 85 (347)
-+.+.+||||+.+.+|-+++..+|+.||.|..+.++.++.+|.++||+||+|.+.+.+..++.+++..+.|+.+.|.+..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred c
Q psy630 86 S 86 (347)
Q Consensus 86 ~ 86 (347)
.
T Consensus 179 ~ 179 (231)
T KOG4209|consen 179 T 179 (231)
T ss_pred e
Confidence 3
No 183
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.56 E-value=7.7e-08 Score=56.10 Aligned_cols=26 Identities=35% Similarity=0.677 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+|.||||+|+..|+.+++++||++||
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga 26 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGA 26 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTS
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcC
Confidence 58999999999999999999999997
No 184
>KOG0226|consensus
Probab=98.56 E-value=6.3e-08 Score=81.13 Aligned_cols=86 Identities=24% Similarity=0.424 Sum_probs=77.2
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+-+.+.-+||.|.|..+++++-|-..|.+|-.-...++++++.||+++||+||-|.+..++.+|+.. +|..++.++|..
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 4456677899999999999999999999998878889999999999999999999999999999985 999999999998
Q ss_pred cCCCccc
Q psy630 82 QPSDSHN 88 (347)
Q Consensus 82 ~~~~~~~ 88 (347)
..+..+.
T Consensus 265 RkS~wke 271 (290)
T KOG0226|consen 265 RKSEWKE 271 (290)
T ss_pred hhhhHHh
Confidence 7665554
No 185
>KOG0132|consensus
Probab=98.55 E-value=1e-07 Score=91.27 Aligned_cols=77 Identities=17% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
.||||||+||..+++.+|..+|+.||.|.+|.++.. +|||||......+|.+|+.. +...+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 479999999999999999999999999999988654 58999999999999999985 88889999999999987
Q ss_pred cccc
Q psy630 87 HNRM 90 (347)
Q Consensus 87 ~~~~ 90 (347)
+.-+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6643
No 186
>KOG0129|consensus
Probab=98.53 E-value=2.6e-07 Score=85.00 Aligned_cols=130 Identities=18% Similarity=0.334 Sum_probs=86.7
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCC---CCcee---EEEEEEcCHHHHHHHHhcCCCccCCcc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNT---GLSKG---FGFVTFQNKEAVDKVFSTDSHVLEGSR 78 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t---~~~~g---~afV~f~~~~~a~~a~~~~~~~~~g~~ 78 (347)
+.-.++||||+||++++|+.|...|..||.+ .|.++...+. --++| |+|+.|+++.++..-+...-..-.+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 3446799999999999999999999999976 4555532111 12466 999999998887766643111111111
Q ss_pred ccccCCCcccc-------------cch-hhhhhcccccccccCCcccccchhhHHHHh-hccccceecccCC
Q psy630 79 LSIQPSDSHNR-------------MAE-NMEDRFNQACDYLPSLVKKLDSSTLLKFYA-LYKQATVGQCNID 135 (347)
Q Consensus 79 l~v~~~~~~~~-------------~~~-~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~-~fg~v~~g~~~~~ 135 (347)
+.|.-..-+.. ... .....-...++||++||-.++.++|..+|. .||.|..+-|.++
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 22211111000 000 111222457999999999999999999999 9999999888887
No 187
>KOG0533|consensus
Probab=98.52 E-value=2.6e-07 Score=78.95 Aligned_cols=80 Identities=28% Similarity=0.546 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
...+|+|.|||+.+++++|+++|..||.+..+-+-.++ .|.+.|.|-|.|...++|.+|++. ++..++|+++.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34689999999999999999999999988888888887 599999999999999999999985 8899999999887665
Q ss_pred cc
Q psy630 86 SH 87 (347)
Q Consensus 86 ~~ 87 (347)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 53
No 188
>KOG4369|consensus
Probab=98.36 E-value=1.9e-07 Score=92.74 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=72.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCcccc-CCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQL-DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+...|..|.+++..|+-+++..+++.|+. ..+++..+ |..+.|+|.+||..|+.++|.+||. +|++-..++-...|
T Consensus 782 niehrdkkgf~plImaatagh~tvV~~llk-~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~-~gankehrnvsDyt 859 (2131)
T KOG4369|consen 782 NIEHRDKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQSDRTKDTMLSLACSGGRTRVVELLLN-AGANKEHRNVSDYT 859 (2131)
T ss_pred cccccccccchhhhhhcccCchHHHHHHHh-hhhhhhhhcccccCceEEEecCCCcchHHHHHHH-hhccccccchhhcC
Confidence 456667777777777777777777777776 56666653 6677777777777777777777777 57777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||.+|...|..++|.+||.+|+
T Consensus 860 Plsla~Sggy~~iI~~llS~Gs 881 (2131)
T KOG4369|consen 860 PLSLARSGGYTKIIHALLSSGS 881 (2131)
T ss_pred chhhhcCcchHHHHHHHhhccc
Confidence 7777777777777777777774
No 189
>KOG2384|consensus
Probab=98.36 E-value=8.9e-07 Score=71.41 Aligned_cols=66 Identities=27% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy630 279 DFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 279 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~g-a~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 345 (347)
+.++|.+|..|||||+.|+..|..+.+.+|+. .| +.|...|..|.+++.+|-..|+.+++..|.++
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~ 68 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN 68 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence 46799999999999999999999999999999 59 89999999999999999999999999988764
No 190
>KOG0511|consensus
Probab=98.34 E-value=8.7e-07 Score=78.62 Aligned_cols=73 Identities=27% Similarity=0.315 Sum_probs=56.9
Q ss_pred CcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH
Q psy630 256 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332 (347)
Q Consensus 256 ~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~ 332 (347)
..++.+|+.|+.+.+..++. .|.++|..|....+||.+|+..||.++|++||+ +||-...-..+|.-. ||++.
T Consensus 38 ~elceacR~GD~d~v~~LVe--tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~RC-~YgaL 110 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVE--TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDRC-HYGAL 110 (516)
T ss_pred HHHHHHhhcccHHHHHHHHH--hCCCcchhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcchh-hhhhh
Confidence 35666777777776555554 599999999999999999999999999999998 798777666677644 44444
No 191
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=3.7e-06 Score=61.53 Aligned_cols=67 Identities=16% Similarity=0.315 Sum_probs=58.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhc--cCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSE--YGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE 75 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~--~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 75 (347)
+||-|+|||...|.++|.+.+.. .|..-.+.++.|..++.+.|||||.|.+.+.+.+-... +|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999988864 36777889999999999999999999999999888775 766664
No 192
>KOG0782|consensus
Probab=98.32 E-value=2.3e-06 Score=79.67 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=53.1
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCC-CccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDF-NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
+.+..++||+|+..+..+++++|+++.+. .++..|..|.|+||-|+..++-.++.+|++ .||.+...|..|.||-.-|
T Consensus 896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvd-agasl~ktd~kg~tp~era 974 (1004)
T KOG0782|consen 896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVD-AGASLRKTDSKGKTPQERA 974 (1004)
T ss_pred CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh-cchhheecccCCCChHHHH
Confidence 34445566666655555566655553222 234455566666666666666666666665 5666666666666666666
Q ss_pred HHcCCHHHHHHHHh
Q psy630 331 KAIEHTDLIEYLVN 344 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~ 344 (347)
-..|..+++.||-.
T Consensus 975 qqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 975 QQAGDPDLAAYLES 988 (1004)
T ss_pred HhcCCchHHHHHhh
Confidence 66666666665543
No 193
>KOG0782|consensus
Probab=98.31 E-value=1.1e-06 Score=81.60 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=80.0
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCC--ccccCCCCCcHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD--VNVTDSDGDYGLDYA 330 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~--i~~~d~~g~TpLh~A 330 (347)
..+.++|.++..+++-.+.+.-.. |.++-.++.+..|.||+|+..|+-+||++||+ +|-. ++..|..|.|+||-|
T Consensus 865 piseeil~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyild-h~p~elld~~de~get~lhka 941 (1004)
T KOG0782|consen 865 PISEEILRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILD-HGPSELLDMADETGETALHKA 941 (1004)
T ss_pred CccHHHHHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHh-cCCHHHHHHHhhhhhHHHHHH
Confidence 345678999999998877777666 66777888999999999999999999999999 5653 566788999999999
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..++..++.+|++.||
T Consensus 942 a~~~~r~vc~~lvdaga 958 (1004)
T KOG0782|consen 942 ACQRNRAVCQLLVDAGA 958 (1004)
T ss_pred HHhcchHHHHHHHhcch
Confidence 99999999999999997
No 194
>KOG0520|consensus
Probab=98.30 E-value=3.7e-07 Score=90.74 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=66.1
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
..-.+++++|.++......+++.+.+..+......|.+|.-.+|+ |..++.+.+-+|+.-+|..++.+|..||||||||
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA 648 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA 648 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence 345667777777777777777777763355555566666666666 5556666665555446777777888888888888
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..|+..++..|++.||
T Consensus 649 a~~G~e~l~a~l~~lga 665 (975)
T KOG0520|consen 649 AFRGREKLVASLIELGA 665 (975)
T ss_pred hhcCHHHHHHHHHHhcc
Confidence 88888777777776664
No 195
>KOG0151|consensus
Probab=98.28 E-value=1.1e-06 Score=83.70 Aligned_cols=82 Identities=20% Similarity=0.410 Sum_probs=70.8
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeC---CCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDK---NTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
...++++||+||++.++++.|...|..||+|.+++|+..+ .....+-|+||-|-+..++++|++. ++..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3457899999999999999999999999999999998554 2244568999999999999999986 99999999988
Q ss_pred ccCCCc
Q psy630 81 IQPSDS 86 (347)
Q Consensus 81 v~~~~~ 86 (347)
+.|..+
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 887633
No 196
>KOG0120|consensus
Probab=98.25 E-value=1.9e-06 Score=80.72 Aligned_cols=84 Identities=26% Similarity=0.471 Sum_probs=77.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
+....++||++||...++.+++++...||.+....++.+..+|.++||||-+|.+......|+.. ||..+.++.+.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34456899999999999999999999999999999999999999999999999999999999985 99999999999998
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+....
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 76644
No 197
>KOG4660|consensus
Probab=98.22 E-value=1.1e-06 Score=81.64 Aligned_cols=72 Identities=25% Similarity=0.446 Sum_probs=63.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
+.-..++|+|-|||.++++++|+..|+.||+|..|+. |-..+|.+||+|.+...|++|++. ++..+.|+.+.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456789999999999999999999999999999765 445579999999999999999986 99999998887
No 198
>KOG1190|consensus
Probab=98.22 E-value=5.1e-06 Score=74.38 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=91.4
Q ss_pred CCeEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 8 LNKIFVGNLPWT-VSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 8 ~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
...|-|.||... +|.+-|.-+|..||.|..|+|..++. --|.|.+.+...|+.|+.. +|+.+.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 457888998765 79999999999999999999998763 5799999999999999986 9999999999998653
Q ss_pred ccc------c-----------------cchhhhh----hc-ccccccccCCcccccchhhHHHHhhccccc
Q psy630 86 SHN------R-----------------MAENMED----RF-NQACDYLPSLVKKLDSSTLLKFYALYKQAT 128 (347)
Q Consensus 86 ~~~------~-----------------~~~~~~~----~f-~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~ 128 (347)
-.. . ..++... .| ..+++++.|+|+.+++|+++.+|..-|-..
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~v 442 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQV 442 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceE
Confidence 211 0 0000011 11 236889999999999999999999877653
No 199
>KOG0521|consensus
Probab=98.18 E-value=1.7e-06 Score=86.47 Aligned_cols=89 Identities=28% Similarity=0.312 Sum_probs=81.1
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~ 332 (347)
..|.+++|.|+..+...++++|++ .++++|..|..|+||||.+...|+...+..|++ .|++.++.+.+|.+||++|..
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~ 731 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME 731 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence 456899999999999999999999 899999999999999999999999999999999 699999999999999999988
Q ss_pred cCCHHHHHHHH
Q psy630 333 IEHTDLIEYLV 343 (347)
Q Consensus 333 ~~~~~~v~~Ll 343 (347)
..+.+++-+|.
T Consensus 732 ~~~~d~~~l~~ 742 (785)
T KOG0521|consen 732 AANADIVLLLR 742 (785)
T ss_pred hccccHHHHHh
Confidence 88877776653
No 200
>KOG0128|consensus
Probab=98.14 E-value=7.2e-08 Score=93.35 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=97.7
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
+.++..++||+||++.+.+.+|...|..+|.+..+++..-...++.+|+|||+|...+.+.+|+.++...+-|
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------- 735 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------- 735 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-------
Confidence 3455678999999999999999999999998888777645556889999999999999999999874444433
Q ss_pred CCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCC
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQ 156 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~ 156 (347)
...++|+|.|...+.+.++.++..+|.++.....+.+ -|+.|+.|...+.+
T Consensus 736 ----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r------~gkpkg~a~v~y~~ 786 (881)
T KOG0128|consen 736 ----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR------AGKPKGKARVDYNT 786 (881)
T ss_pred ----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh------ccccccceeccCCC
Confidence 2356799999999999999999999999865544433 44555555555443
No 201
>KOG1365|consensus
Probab=98.14 E-value=4e-06 Score=74.39 Aligned_cols=142 Identities=13% Similarity=0.192 Sum_probs=98.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcc----CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCC
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEY----GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~ 85 (347)
-|-.++||+++++.++.+||.+- |....|-+++.+ .|+..|-|||.|..++.|+.|+..+...++-|.|.+-++.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 46678999999999999999632 344556666654 4999999999999999999999987777777777665433
Q ss_pred cccc-------c--------ch---------hhhhhcccccccccCCcccccchhhHHHHhhccccceecccCC-CCCcc
Q psy630 86 SHNR-------M--------AE---------NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID-KPSWY 140 (347)
Q Consensus 86 ~~~~-------~--------~~---------~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~-~p~~~ 140 (347)
...- . .. .....-...++.+++||...+-|+++.|++.|-.-. ..- -....
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i----~f~gVHmv~ 317 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDI----RFQGVHMVL 317 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhc----ccceeEEEE
Confidence 2110 0 00 000111245788999999999999999999886432 110 01123
Q ss_pred chhHHHHHHHHHHcCC
Q psy630 141 NMEAKSKYNAWNSLGQ 156 (347)
Q Consensus 141 ~~~~~~K~~aw~~~~~ 156 (347)
+..||..++||.++.+
T Consensus 318 N~qGrPSGeAFIqm~n 333 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRN 333 (508)
T ss_pred cCCCCcChhhhhhhhh
Confidence 4567778888887544
No 202
>KOG3609|consensus
Probab=98.10 E-value=6.5e-06 Score=80.51 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=69.6
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCC--CCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCc-------------
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKD--FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV------------- 316 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i------------- 316 (347)
...+...+.++-.|+...+.+.|..... .++|+.|.-|+++||+|..+.+.+++++|++ ++..+
T Consensus 23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~-~~~~~gdALL~aI~~~~v 101 (822)
T KOG3609|consen 23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLD-TSSEEGDALLLAIAVGSV 101 (822)
T ss_pred chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhc-CccccchHHHHHHHHHHH
Confidence 3455667777777777777777766433 5677788888888888888888888888877 33111
Q ss_pred -----c------------------ccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 317 -----N------------------VTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 317 -----~------------------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
. ..-.-+-|||.+||..+++||+++||++||
T Consensus 102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 0 111246799999999999999999999986
No 203
>KOG0520|consensus
Probab=97.92 E-value=5.1e-06 Score=82.86 Aligned_cols=95 Identities=28% Similarity=0.446 Sum_probs=79.6
Q ss_pred CcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc------CC
Q psy630 248 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT------DS 321 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~------d~ 321 (347)
....|.++...+|.|+.++....+.++.- .+..++.+|..||||||||+.+||..++..|+. .|++.+.. .-
T Consensus 601 ~~eld~d~qgV~hfca~lg~ewA~ll~~~-~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p 678 (975)
T KOG0520|consen 601 DLELDRDGQGVIHFCAALGYEWAFLPISA-DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIE-LGADPGAVTDPSPETP 678 (975)
T ss_pred chhhcccCCChhhHhhhcCCceeEEEEee-cccccccccCCCCcccchHhhcCHHHHHHHHHH-hccccccccCCCCCCC
Confidence 45567788888999888888876665555 789999999999999999999999999999998 68876653 23
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHh
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVN 344 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~ 344 (347)
.|.|+-.+|...|+..+..+|-+
T Consensus 679 ~g~ta~~la~s~g~~gia~~lse 701 (975)
T KOG0520|consen 679 GGKTAADLARANGHKGIAGYLSE 701 (975)
T ss_pred CCCchhhhhhcccccchHHHHhh
Confidence 69999999999999998888754
No 204
>KOG4210|consensus
Probab=97.90 E-value=1.8e-05 Score=70.18 Aligned_cols=142 Identities=20% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCC-CccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDS-HVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~~~ 85 (347)
...+.|+|++...+.+.+...++..+|...............++|++++.|...+.+..++...+ ....++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999899999999988888887777788999999999999999999998744 35555544433322
Q ss_pred cccccchh---hhhhccccccc-ccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHH
Q psy630 86 SHNRMAEN---MEDRFNQACDY-LPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNS 153 (347)
Q Consensus 86 ~~~~~~~~---~~~~f~~~~~~-v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~ 153 (347)
....+... ........++| |.+++..++.++|+..|..+|.++..++...++ .+..|..|...
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~-----s~~~kg~a~~~ 233 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE-----SGDSKGFAYVD 233 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCC-----ccchhhhhhhh
Confidence 22211111 11223335566 999999999999999999999999877776654 44555555554
No 205
>KOG1190|consensus
Probab=97.88 E-value=1.1e-05 Score=72.23 Aligned_cols=117 Identities=16% Similarity=0.276 Sum_probs=84.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCcccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLSIQ 82 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~v~ 82 (347)
...+-|.++|||++++|.++-.++.+||.|..+.+.+.+ + .||++|.+.++|...+.. -...+.|+++.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk----n--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK----N--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc----h--hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 356789999999999999999999999999998886543 3 799999999988774432 3344678888887
Q ss_pred CCCccc---------ccch--------------hhhh-hcc---------cccccccCCcccccchhhHHHHhhccccc
Q psy630 83 PSDSHN---------RMAE--------------NMED-RFN---------QACDYLPSLVKKLDSSTLLKFYALYKQAT 128 (347)
Q Consensus 83 ~~~~~~---------~~~~--------------~~~~-~f~---------~~~~~v~~l~~~~~~e~l~~~f~~fg~v~ 128 (347)
++.-.. .+.+ +... .+. --.+.|.++-..++-+-|.++|+.||-|.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 642211 0000 0000 000 12456778888899999999999999886
No 206
>KOG0129|consensus
Probab=97.87 E-value=4.4e-05 Score=70.68 Aligned_cols=83 Identities=29% Similarity=0.443 Sum_probs=68.5
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccC----Cc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFS-EYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLE----GS 77 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~----g~ 77 (347)
..++..+|||||+||.-++.++|-.+|+ -||.|..+.|-+|++-++++|-|=|+|.+..+..+||...-..+. .+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce
Confidence 3467789999999999999999999998 699999999999988899999999999999999999975333332 23
Q ss_pred cccccCCC
Q psy630 78 RLSIQPSD 85 (347)
Q Consensus 78 ~l~v~~~~ 85 (347)
++.|.+.-
T Consensus 445 RVEIkPYv 452 (520)
T KOG0129|consen 445 RVEIKPYV 452 (520)
T ss_pred eeeeccee
Confidence 45555443
No 207
>KOG4211|consensus
Probab=97.87 E-value=2.6e-05 Score=71.64 Aligned_cols=76 Identities=14% Similarity=0.339 Sum_probs=62.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMN-ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
....|-+++||+.||+++|.+||+-.-.+.. +.++.++. +++.|-|||.|.+.+.|+.|+..+...|.-|.|.|-+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFR 178 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeeh
Confidence 4456888999999999999999987654444 55666664 8899999999999999999998877778777777653
No 208
>KOG1995|consensus
Probab=97.87 E-value=1.8e-05 Score=70.03 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=73.6
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIM--------NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG 76 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 76 (347)
...-+|||-+||..+++.++.++|.++|.|. .|.|.+++.|++++|-|.|.|.+...|+.|+.- ++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4456899999999999999999999999774 367889999999999999999999999999985 9999999
Q ss_pred ccccccCCCccc
Q psy630 77 SRLSIQPSDSHN 88 (347)
Q Consensus 77 ~~l~v~~~~~~~ 88 (347)
..|+|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998776543
No 209
>KOG0521|consensus
Probab=97.73 E-value=2.1e-05 Score=78.87 Aligned_cols=68 Identities=34% Similarity=0.342 Sum_probs=61.4
Q ss_pred CCCccccC--CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 279 DFNINQLD--ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 279 ~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+.++|..+ ..|.|+||.|+..+..-++++||+ +|+++|..|..|+||||.+...|+...+..|+++||
T Consensus 644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a 713 (785)
T KOG0521|consen 644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGA 713 (785)
T ss_pred hhhhccchhhhcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhccccc
Confidence 55555533 468999999999999999999999 899999999999999999999999999999999987
No 210
>KOG4210|consensus
Probab=97.72 E-value=2.7e-05 Score=69.12 Aligned_cols=81 Identities=25% Similarity=0.530 Sum_probs=72.2
Q ss_pred CCeEE-EeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 8 LNKIF-VGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~-V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
..++| |++|++.+++++|+.+|..+|.|..++++.++.++.++|||||.|........++..+...+.|+++.+....+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34566 99999999999999999999999999999999999999999999999998888887667778889999887766
Q ss_pred cc
Q psy630 87 HN 88 (347)
Q Consensus 87 ~~ 88 (347)
..
T Consensus 264 ~~ 265 (285)
T KOG4210|consen 264 RP 265 (285)
T ss_pred Cc
Confidence 54
No 211
>KOG0511|consensus
Probab=97.66 E-value=0.00014 Score=65.05 Aligned_cols=57 Identities=30% Similarity=0.451 Sum_probs=54.4
Q ss_pred chHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 290 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 290 ~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.--|-.||..|..+.++.|++ .|.+||++|.-...||.+|+.+||.++|++||++||
T Consensus 37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA 93 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA 93 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence 446889999999999999999 799999999999999999999999999999999998
No 212
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.59 E-value=0.00024 Score=49.65 Aligned_cols=67 Identities=21% Similarity=0.415 Sum_probs=44.2
Q ss_pred eEEEeCCCCCCCHHHHH----HHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 10 KIFVGNLPWTVSHNELK----KFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~----~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
.|||.|||-+..-..++ .++..+| .|.+|. .+.|+|.|.+.+.|.+|.+. ++..+.|+.|.|.+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 58999999999887665 5555665 555541 36899999999999999985 99999999999988
Q ss_pred CCc
Q psy630 84 SDS 86 (347)
Q Consensus 84 ~~~ 86 (347)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 744
No 213
>KOG0112|consensus
Probab=97.59 E-value=3.3e-05 Score=75.80 Aligned_cols=126 Identities=13% Similarity=0.174 Sum_probs=95.1
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+...+++||+|||+..+++.+|+..|..+|.|.+|.|-+.+. +.-..|+||.|.+...+-.|... .+..|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 345678999999999999999999999999999999866532 44557999999998887777753 4444443344554
Q ss_pred CCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCc
Q psy630 83 PSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSW 139 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~ 139 (347)
+..++.. ....++++++....+...+...|..||.|...++.--.|.+
T Consensus 447 lG~~kst---------~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ya 494 (975)
T KOG0112|consen 447 LGQPKST---------PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYA 494 (975)
T ss_pred ccccccc---------cceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcce
Confidence 4433221 23456799999999999999999999999876666555543
No 214
>KOG0705|consensus
Probab=97.58 E-value=0.00013 Score=68.55 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=58.8
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCc
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADV 316 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i 316 (347)
..-+.+|+|+||.|+.-++..+.+||.= +|+++-.+|.+|+|+|.||-..|.-+|+..||. +|+..
T Consensus 655 t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~sqec~d~llq-~gcp~ 720 (749)
T KOG0705|consen 655 TCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGSQECIDVLLQ-YGCPD 720 (749)
T ss_pred cccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcccHHHHHHHHH-cCCCc
Confidence 3456778999999998888888888885 899999999999999999999999999999998 78754
No 215
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.54 E-value=0.00016 Score=63.39 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=61.9
Q ss_pred CCeEEEeCCCCCCCHHHH------HHHHhccCCeeEEEEeeeCCCCCc-ee--EEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 8 LNKIFVGNLPWTVSHNEL------KKFFSEYGQIMNASVMFDKNTGLS-KG--FGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l------~~~f~~~G~i~~~~i~~~~~t~~~-~g--~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
..-+||-+||+.+..++. .++|.+||.|..|.|-+...+-.+ .+ -.||+|.+.++|.+|+.. +|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345899999999988873 699999999998877543211111 12 249999999999999987 99999999
Q ss_pred cccccCCCcc
Q psy630 78 RLSIQPSDSH 87 (347)
Q Consensus 78 ~l~v~~~~~~ 87 (347)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9988765543
No 216
>KOG0120|consensus
Probab=97.49 E-value=0.00011 Score=69.21 Aligned_cols=142 Identities=18% Similarity=0.299 Sum_probs=100.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhcc-----------C-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEY-----------G-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSH 72 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-----------G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~ 72 (347)
-.+.+++||+++|+.++++....+|..- | .+..+.+-. .+.|||++|.+.+.|..++..++.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhcccch
Confidence 3466889999999999999999999753 2 255555533 357999999999999999999999
Q ss_pred ccCCccccccCCCcccccc-h---------------hhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 73 VLEGSRLSIQPSDSHNRMA-E---------------NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 73 ~~~g~~l~v~~~~~~~~~~-~---------------~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
.+.|+++.+.......... . .....-....+||++||..+++.+++++...||....-.+..+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 9999998886443322110 0 00111123678999999999999999999999988654444443
Q ss_pred CCccchhHHHHHHHHHHcCCC
Q psy630 137 PSWYNMEAKSKYNAWNSLGQM 157 (347)
Q Consensus 137 p~~~~~~~~~K~~aw~~~~~~ 157 (347)
+ .|-.|..|+-+..+-
T Consensus 326 ~-----~g~skg~af~ey~dp 341 (500)
T KOG0120|consen 326 A-----TGNSKGFAFCEYCDP 341 (500)
T ss_pred c-----cccccceeeeeeeCC
Confidence 3 244555555554443
No 217
>KOG1365|consensus
Probab=97.49 E-value=0.00015 Score=64.60 Aligned_cols=145 Identities=16% Similarity=0.261 Sum_probs=95.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
+..-+-.++||+..++.++-.+|+-......-+.+.....|...|.+.|.|.+.+.-+.|++.+.+.+.++.+.|-.+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 34455678999999999999999743222111222222346667999999999999999999988889999999877655
Q ss_pred cccc-----chhhhhhc----ccccccccCCcccccchhhHHHHhhccccc---eecccCCCCCccchhHHHHHHHHHHc
Q psy630 87 HNRM-----AENMEDRF----NQACDYLPSLVKKLDSSTLLKFYALYKQAT---VGQCNIDKPSWYNMEAKSKYNAWNSL 154 (347)
Q Consensus 87 ~~~~-----~~~~~~~f----~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~---~g~~~~~~p~~~~~~~~~K~~aw~~~ 154 (347)
..-. .......| +.-.+.+++||.+.++.++.+||+.--.++ ++-..+.+| -||..++||.-+
T Consensus 139 e~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-----dgrpTGdAFvlf 213 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-----DGRPTGDAFVLF 213 (508)
T ss_pred hhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-----CCCcccceEEEe
Confidence 3211 00111111 234567889999999999999997433332 233333343 456677777765
Q ss_pred CC
Q psy630 155 GQ 156 (347)
Q Consensus 155 ~~ 156 (347)
..
T Consensus 214 a~ 215 (508)
T KOG1365|consen 214 AC 215 (508)
T ss_pred cC
Confidence 44
No 218
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.45 E-value=0.00028 Score=52.89 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=35.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~ 69 (347)
-|+|.+++..++.++|++.|++||.|..|.+.+. -.-|||.|.+.+.|+.|+..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHH
Confidence 4788899999999999999999999999888543 24799999999999999974
No 219
>KOG0506|consensus
Probab=97.44 E-value=9.6e-05 Score=67.79 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=52.8
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy630 285 LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 285 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 345 (347)
++..+.-++++|+..|.+..++-+.- .|.|++.+|++.+|+||+|+..|+.+++++||+.
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~ 561 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFAL-QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA 561 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHH-hcccccccccccchhheeecccCceeHHHHHHHH
Confidence 34567789999999999988866655 5999999999999999999999999999999874
No 220
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.40 E-value=0.00057 Score=44.27 Aligned_cols=52 Identities=17% Similarity=0.424 Sum_probs=42.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHH
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~ 67 (347)
+.|-|.+.|++..+. +..+|.+||+|..+.+. ...-+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 578899999888755 55699999999998875 23458999999999999985
No 221
>KOG2193|consensus
Probab=97.35 E-value=0.00019 Score=64.85 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=82.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc--CCCccCCccccccCCCc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~l~v~~~~~ 86 (347)
.++|++||.+.++-.+|..+|...---.+-.++. ..||+||.+.+...+.+|++. ....+.|+.+.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5699999999999999999996531111111111 248999999999999999985 44557899998877766
Q ss_pred ccccchhhhhhcccccccccCCcccccchhhHHHHhhccccce
Q psy630 87 HNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATV 129 (347)
Q Consensus 87 ~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~ 129 (347)
+..++ ..+-++|+|+.+-++.+..|.+.||.+..
T Consensus 76 kkqrs---------rk~Qirnippql~wevld~Ll~qyg~ve~ 109 (584)
T KOG2193|consen 76 KKQRS---------RKIQIRNIPPQLQWEVLDSLLAQYGTVEN 109 (584)
T ss_pred HHHHh---------hhhhHhcCCHHHHHHHHHHHHhccCCHhH
Confidence 55432 34779999999999999999999998864
No 222
>KOG1457|consensus
Probab=97.30 E-value=0.00025 Score=58.79 Aligned_cols=62 Identities=19% Similarity=0.360 Sum_probs=48.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
.+|||.||.+.+|+++|+.+|+.|-.....+|. .+ ....+|||+|.+.+.|..|+.. +|..+
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~---~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR---GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC---CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 489999999999999999999999765555552 22 2346899999999999999864 55443
No 223
>KOG3878|consensus
Probab=97.29 E-value=0.00029 Score=61.64 Aligned_cols=70 Identities=24% Similarity=0.450 Sum_probs=63.2
Q ss_pred ccccchhhHHHHhhccccceecccCCC---CCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccCCh
Q psy630 110 KKLDSSTLLKFYALYKQATVGQCNIDK---PSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWED 179 (347)
Q Consensus 110 ~~~~~e~l~~~f~~fg~v~~g~~~~~~---p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~~~~~ 179 (347)
..++-++.++|.++-+|+..|++++++ -|++++.|+-+-.+|..++.|++++||..||.++..+.+-+..
T Consensus 51 ~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre~AM~~FV~Lldr~C~~F~~ 123 (469)
T KOG3878|consen 51 IHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISREQAMEGFVDLLDRMCSAFRP 123 (469)
T ss_pred cCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHHHHHHHHHHHHHhcchhhhh
Confidence 457888999999999999999999754 3899999999999999999999999999999999998887665
No 224
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.25 E-value=0.0012 Score=48.68 Aligned_cols=77 Identities=17% Similarity=0.343 Sum_probs=51.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEE-EeeeC------CCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNAS-VMFDK------NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 79 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~-i~~~~------~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 79 (347)
..+.|.|=+.|+.. ...+-++|++||.|.+.. +.++. ........-.|+|.++.+|.+|+..||..+.|..+
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 45668888999995 456788999999998764 11110 00123468999999999999999999999998644
Q ss_pred -cccCC
Q psy630 80 -SIQPS 84 (347)
Q Consensus 80 -~v~~~ 84 (347)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45555
No 225
>KOG4849|consensus
Probab=97.22 E-value=0.00026 Score=62.35 Aligned_cols=75 Identities=21% Similarity=0.452 Sum_probs=64.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYG--QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
-+|||||-|.+|+++|-+.+..-| .+.++++..++..|.|+|||.|...+..+.++.++. ....++|+.-.|...
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 589999999999999988887665 466778888888999999999999999999999986 788888887666543
No 226
>KOG0818|consensus
Probab=97.20 E-value=0.00065 Score=62.80 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=54.0
Q ss_pred ecccCCcccC-CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHh
Q psy630 243 SMINDESQLD-DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIE 310 (347)
Q Consensus 243 ~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 310 (347)
+...+.|-.+ +.|.|+||.|+..+...-+++|.- +|++++..|..|+||+.+|-..||-++..-|++
T Consensus 154 ~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 154 SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred HcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence 3344555443 457899999888777777788877 899999999999999999999999988776665
No 227
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.17 E-value=0.00068 Score=36.84 Aligned_cols=28 Identities=46% Similarity=0.758 Sum_probs=21.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy630 289 GLNCLHWACDRGHLKVVQHLIEKCGADVN 317 (347)
Q Consensus 289 g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~ 317 (347)
|.||||+|+..++.+++++|++ .|.+++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~-~~~~~~ 29 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLD-KGADIN 29 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence 6778888888888888888887 566654
No 228
>KOG4676|consensus
Probab=97.12 E-value=0.00058 Score=61.19 Aligned_cols=125 Identities=12% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCC---CCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKN---TGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
..-|-|.||.+.+|.++++.+|.-.|.|..+.++-... -......|||-|.+...+..|-.+-.++|-++.|.|.++
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 34789999999999999999999999999998865321 123467899999999988888777566676776666543
Q ss_pred Ccccccch------------------------------------------hhh-----hhc--ccccccccCCcccccch
Q psy630 85 DSHNRMAE------------------------------------------NME-----DRF--NQACDYLPSLVKKLDSS 115 (347)
Q Consensus 85 ~~~~~~~~------------------------------------------~~~-----~~f--~~~~~~v~~l~~~~~~e 115 (347)
........ .+. ..+ ...+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 32111000 000 000 01357888888888888
Q ss_pred hhHHHHhhccccceecc
Q psy630 116 TLLKFYALYKQATVGQC 132 (347)
Q Consensus 116 ~l~~~f~~fg~v~~g~~ 132 (347)
++.++|..||.+....+
T Consensus 167 e~~e~f~r~Gev~ya~~ 183 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHT 183 (479)
T ss_pred hhhhhhhhcchhhhhhh
Confidence 88999999888865433
No 229
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.06 E-value=0.00013 Score=58.29 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=46.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~kGfaFV~--F~~~e~A~~Al 93 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE-----TGRSRGFGFVN--FNDEGAATAAI 93 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-----CCCcceEEEEE--ECCHHHHHHHH
Confidence 446899999999999999999999999998777665432 34556666655 44567777764
No 230
>KOG0522|consensus
Probab=97.05 E-value=0.0015 Score=61.17 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=47.6
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhh
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 311 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 311 (347)
+..|..|.|+||.|..-++.....+|+. .++++..+++.||+|||-|+..|+..++..+|.+
T Consensus 49 d~~D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 49 DRRDPPGRTPLHLAVRLGHVEAARILLS-AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred ccccCCCCccHHHHHHhcCHHHHHHHHh-cCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 3345566777777665555545555655 5999999999999999999999999988888763
No 231
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.04 E-value=0.00099 Score=36.14 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.|.||||+|+..++.+++++|+++|+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~ 26 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGA 26 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 47899999999999999999999874
No 232
>KOG3152|consensus
Probab=97.02 E-value=0.00058 Score=57.88 Aligned_cols=72 Identities=17% Similarity=0.390 Sum_probs=58.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCC--------CCceeE----EEEEEcCHHHHHHHHhc-CCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNT--------GLSKGF----GFVTFQNKEAVDKVFST-DSHV 73 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t--------~~~~g~----afV~f~~~~~a~~a~~~-~~~~ 73 (347)
.+.-||+++|||.+.-.-|+++|++||.|-.|.+-....+ |.++++ |.|+|.+...|..+... |+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988655444 333333 66999999999888775 9898
Q ss_pred cCCcc
Q psy630 74 LEGSR 78 (347)
Q Consensus 74 ~~g~~ 78 (347)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88874
No 233
>KOG4206|consensus
Probab=96.90 E-value=0.0035 Score=52.36 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC-Ccccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-GSRLSIQ 82 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~v~ 82 (347)
......+|+.|||..++.+.+..+|.+|..-..++++..+ ++.|||+|.+...+..|... ++..+. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3455689999999999999999999999999999987654 48999999998888888864 655554 5556665
Q ss_pred CC
Q psy630 83 PS 84 (347)
Q Consensus 83 ~~ 84 (347)
++
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 54
No 234
>KOG0106|consensus
Probab=96.87 E-value=0.00071 Score=56.87 Aligned_cols=72 Identities=28% Similarity=0.537 Sum_probs=61.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...+.++|.|++..+.+++|.++|.++|.+....+ ..+++||+|...+++..|+.. ++..+.|+.|.+...
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 34568899999999999999999999999854433 357899999999999999986 999999999998544
Q ss_pred C
Q psy630 85 D 85 (347)
Q Consensus 85 ~ 85 (347)
.
T Consensus 169 ~ 169 (216)
T KOG0106|consen 169 S 169 (216)
T ss_pred C
Confidence 3
No 235
>KOG0149|consensus
Probab=96.81 E-value=0.00036 Score=58.44 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=53.4
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccCChh
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDK 180 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~~~~~~ 180 (347)
.+|||++|+.....+.|+++|..||+|.+.-+..++. .||+|+.+|..+++ .+-|.++ +++-.|-.+..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~-----t~rskGyGfVTf~d--~~aa~rA----c~dp~piIdGR 81 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN-----TGRSKGYGFVTFRD--AEAATRA----CKDPNPIIDGR 81 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC-----CccccceeeEEeec--HHHHHHH----hcCCCCccccc
Confidence 6899999999999999999999999999988888875 78889888876544 4444444 44444444443
No 236
>KOG2505|consensus
Probab=96.73 E-value=0.0046 Score=57.49 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=53.4
Q ss_pred HcCChHHHHHHHhhcCCCCccc------cCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 263 KEGKLDMLVKQLTKLKDFNINQ------LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 263 ~~~~~~~~~~lL~~~~~~~~~~------~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
..+..+..++.|.. .+...|. .+....|+||+|+..|...+|.+||. .|+|+-.+|..|.||..++.
T Consensus 399 kk~~~p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 399 KKKPEPDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hccCchhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence 44555666666666 4544433 34557899999999999999999999 79999999999999999876
No 237
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.72 E-value=0.0008 Score=46.04 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=38.8
Q ss_pred ccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 103 DYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 103 ~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
+||+|||..+++++|+++|+.||.+....+.....+. .+..||.. ..+.++|+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~------~~~~a~V~--F~~~~~a~~a 55 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGK------SKGYAFVE--FESEEDAEKA 55 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSS------EEEEEEEE--ESSHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccccc------ccceEEEE--EcCHHHHHHH
Confidence 5899999999999999999999999876666542222 22223333 4456666665
No 238
>KOG4307|consensus
Probab=96.68 E-value=0.004 Score=59.98 Aligned_cols=74 Identities=19% Similarity=0.401 Sum_probs=60.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+-|-+.|+|++++-++|.+||..|-.+-.-.+++..+.|...|-|.|-|++.++|.+|... ++..|..|.+.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3678899999999999999999997765433334445699999999999999999999975 8888888877653
No 239
>KOG0121|consensus
Probab=96.25 E-value=0.0018 Score=49.06 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=53.5
Q ss_pred hhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy630 93 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKE 172 (347)
Q Consensus 93 ~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~ 172 (347)
.+...-...++||+||...+++|++.+||++.|.|....+-.++.- ...-.|--++..++++|..+ ++-
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k-------ktpCGFCFVeyy~~~dA~~A----lry 97 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK-------KTPCGFCFVEYYSRDDAEDA----LRY 97 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC-------cCccceEEEEEecchhHHHH----HHH
Confidence 3444456689999999999999999999999999987666555421 01112223445577777665 444
Q ss_pred hhccCChhhhhhh
Q psy630 173 VDAGWEDKEQEEI 185 (347)
Q Consensus 173 l~~~~~~~~~~~~ 185 (347)
+...-.++++..+
T Consensus 98 isgtrLddr~ir~ 110 (153)
T KOG0121|consen 98 ISGTRLDDRPIRI 110 (153)
T ss_pred hccCcccccceee
Confidence 4455555544433
No 240
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.19 E-value=0.01 Score=46.57 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=45.1
Q ss_pred HHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 24 ELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 24 ~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
+|.+.|..||.+.-+++..+ .-.|+|.+-.+|.+|+.++|..+.|+.|.|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 56788889999988888643 47899999999999999999999999999987765
No 241
>KOG2384|consensus
Probab=96.17 E-value=0.014 Score=47.65 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCC-CCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKD-FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
++|..|..|+|++..|+..+.-+++.+|+. .| +.+...|..|.+++.+|-..|+.+++..|.+ +-.+-...++
T Consensus 4 ~in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe-~~~ets~p~n 77 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFE-NDRETSHPMN 77 (223)
T ss_pred CccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHH-HhccCCCccc
Confidence 567788999999987766566667777777 56 8999999999999999999999999999988 4444444433
No 242
>KOG0126|consensus
Probab=96.11 E-value=0.00046 Score=55.44 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=42.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQ 156 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~ 156 (347)
..|-|||++||..+++.+++-+|+.||.+.......++. +|++|+.||...++
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~-----TGKSKGFaFLcYED 86 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK-----TGKSKGFAFLCYED 86 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC-----CCcccceEEEEecC
Confidence 358899999999999999999999999998555555543 77888877765444
No 243
>KOG1456|consensus
Probab=96.11 E-value=0.034 Score=49.89 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=82.8
Q ss_pred CCeEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 8 LNKIFVGNLPWT-VSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 8 ~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..-+.|-+|... ++-+.|..+|=.||.|..|++++-+ .|.|.|+..+..+.++|+.. |+..+-|.+|.|..+.
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 345677788776 5667889999999999999999765 48999999999999999985 7777788888776442
Q ss_pred ccc-----------------ccchhhh-------------hhcccccccccCCcccccchhhHHHHhhcc
Q psy630 86 SHN-----------------RMAENME-------------DRFNQACDYLPSLVKKLDSSTLLKFYALYK 125 (347)
Q Consensus 86 ~~~-----------------~~~~~~~-------------~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg 125 (347)
... ..+.... -.+....++.-|.|..++++.+..++..-.
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~ 431 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD 431 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC
Confidence 210 0001111 112335667778899999999998887544
No 244
>KOG0122|consensus
Probab=96.11 E-value=0.0014 Score=55.21 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=49.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..+++.|.||+.++++++|.+||..||.++..-+-.++. .|.+|+.||.. ..++++|.++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~-----TG~~kGFAFVt--F~sRddA~rA 247 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE-----TGLSKGFAFVT--FESRDDAARA 247 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccc-----cCcccceEEEE--EecHHHHHHH
Confidence 568899999999999999999999999998655555554 77888888876 4568888877
No 245
>KOG0105|consensus
Probab=96.10 E-value=0.023 Score=45.97 Aligned_cols=57 Identities=30% Similarity=0.418 Sum_probs=50.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~ 69 (347)
....+|.|++||++-+.++|+++..+.|.|....+.+| |++.|+|...++.+.|+..
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHh
Confidence 34457999999999999999999999999999988776 4899999999999999974
No 246
>KOG0128|consensus
Probab=96.10 E-value=0.0036 Score=61.69 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=64.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
..+||+|.|+..|.++++.+++.+|.+.+.+++..+. |+++|.|||.|.+..++.+++.. +...+.-+.+.|+.+.+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4689999999999999999999999999999888774 99999999999999998888865 55555555556655444
No 247
>KOG1855|consensus
Probab=96.04 E-value=0.0059 Score=55.62 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=53.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeee---CCC--CC--------ceeEEEEEEcCHHHHHHHHhc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFD---KNT--GL--------SKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~t--~~--------~~g~afV~f~~~~~a~~a~~~ 69 (347)
+.++|.+-|||.+-.-+-|.++|..+|.|..|+|... +.. +. .+-+|+|+|...+.|.+|.++
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 6789999999999988999999999999999999765 222 21 256899999999999999986
No 248
>KOG2314|consensus
Probab=96.01 E-value=0.0099 Score=56.05 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=58.4
Q ss_pred CCCeEEEeCCCCCCCH--H----HHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC-Ccc
Q psy630 7 QLNKIFVGNLPWTVSH--N----ELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-GSR 78 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~--~----~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~ 78 (347)
-..-|+|-|+|---.. + -|..+|+++|++....++.+.. |..+||.|++|.+...|+.|++. ||+.++ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3456888888864322 2 2468899999999999998887 44999999999999999999985 888875 445
Q ss_pred cccc
Q psy630 79 LSIQ 82 (347)
Q Consensus 79 l~v~ 82 (347)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 249
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.89 E-value=0.048 Score=38.32 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=39.7
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~ 69 (347)
|....-.||+ .|......+|.++|+.||.| .|.++-|. -|||.....+.+..++..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 3344445565 99999999999999999987 55555543 599999999999888764
No 250
>KOG0114|consensus
Probab=95.87 E-value=0.0046 Score=45.09 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=30.3
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
...+||+|||.+++.++..++|+.||.|.-.++...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~ 53 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT 53 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc
Confidence 356799999999999999999999999976555443
No 251
>KOG1456|consensus
Probab=95.58 E-value=0.034 Score=49.91 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=86.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCcccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLSIQ 82 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~v~ 82 (347)
...--|.|++|-..+++.+|-+.++.||.|..+..+.. +..|.|+|++.+.|..++.+ +...+.|+...+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 34457899999999999999999999999998877543 34799999999999999975 7777888888777
Q ss_pred CCCccc-ccchhhhhhcccccc--cccCCcccccchhhHHHHhhcccccee
Q psy630 83 PSDSHN-RMAENMEDRFNQACD--YLPSLVKKLDSSTLLKFYALYKQATVG 130 (347)
Q Consensus 83 ~~~~~~-~~~~~~~~~f~~~~~--~v~~l~~~~~~e~l~~~f~~fg~v~~g 130 (347)
++.+.. +|.. .+..-....+ -|-|--..++-+-|..+....|+|...
T Consensus 103 yStsq~i~R~g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRI 152 (494)
T KOG1456|consen 103 YSTSQCIERPG-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRI 152 (494)
T ss_pred cchhhhhccCC-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEE
Confidence 774432 2111 1111111222 233444678999999999999998743
No 252
>KOG0115|consensus
Probab=95.42 E-value=0.018 Score=49.13 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=59.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C----CCccCCccccccC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D----SHVLEGSRLSIQP 83 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~----~~~~~g~~l~v~~ 83 (347)
..|||.||+.-+..+.+.+-|+.||+|....++.|- .+++.+-++|.|...-.+.+|... + +....+++..|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 469999999999999999999999999887777664 488999999999999888888865 2 2223455555544
No 253
>KOG0112|consensus
Probab=95.40 E-value=0.024 Score=56.50 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=64.5
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC--cccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG--SRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~ 80 (347)
.....+.+||++|++.+....|...|..||.|..|.+- +...||||.|.+...++.|+.. .+..++| +.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 34567899999999999999999999999999987763 2346999999999999999985 7888765 6677
Q ss_pred ccCCCcc
Q psy630 81 IQPSDSH 87 (347)
Q Consensus 81 v~~~~~~ 87 (347)
|.++...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 7766553
No 254
>KOG1548|consensus
Probab=95.39 E-value=0.035 Score=49.42 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=59.4
Q ss_pred ccCCCeEEEeCC--CC--CCC-------HHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCC
Q psy630 5 IRQLNKIFVGNL--PW--TVS-------HNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSH 72 (347)
Q Consensus 5 ~~~~~~l~V~nL--p~--~~t-------~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~ 72 (347)
.+..++|.++|+ |. ..+ .++|.+-.++||.|.+|.|.- ..+.|.+-|.|.+.+.|..|+.. +|-
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 455678999987 11 122 234566678999999998752 34679999999999999999996 999
Q ss_pred ccCCccccccCCCc
Q psy630 73 VLEGSRLSIQPSDS 86 (347)
Q Consensus 73 ~~~g~~l~v~~~~~ 86 (347)
.|.||.|.-.....
T Consensus 338 ~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 338 WFDGRQLTASIWDG 351 (382)
T ss_pred eecceEEEEEEeCC
Confidence 99999987665443
No 255
>KOG3609|consensus
Probab=95.16 E-value=0.02 Score=56.80 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=41.1
Q ss_pred CCcHHHHHHcCChHHHHHHHhhcCCC--------C-ccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc
Q psy630 255 EKNIYEWAKEGKLDMLVKQLTKLKDF--------N-INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 319 (347)
Q Consensus 255 ~~~~l~~a~~~~~~~~~~lL~~~~~~--------~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~ 319 (347)
|..+|++.+.+-.. ++++++.+... + ....-..+.|||.+||..++.+|+++||++ |+.+...
T Consensus 89 gdALL~aI~~~~v~-~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~~P 160 (822)
T KOG3609|consen 89 GDALLLAIAVGSVP-LVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIPIP 160 (822)
T ss_pred chHHHHHHHHHHHH-HHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCCCC
Confidence 55555655555444 44444441111 0 112334588999999999999999999994 9987654
No 256
>PLN03213 repressor of silencing 3; Provisional
Probab=95.11 E-value=0.0092 Score=55.34 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=30.9
Q ss_pred cccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
..+|||+||...+++++|..+|+.||.|....+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp 43 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV 43 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe
Confidence 4689999999999999999999999999876665
No 257
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.10 E-value=0.013 Score=50.77 Aligned_cols=37 Identities=5% Similarity=0.084 Sum_probs=32.6
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
..++||+||++.+++++|+++|+.||.|....+..++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~ 40 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN 40 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC
Confidence 3579999999999999999999999999987776554
No 258
>KOG2068|consensus
Probab=95.09 E-value=0.01 Score=52.59 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=62.4
Q ss_pred CeEEEeCCCCCCCHHHH---HHHHhccCCeeEEEEeeeCC--CCC-ceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 9 NKIFVGNLPWTVSHNEL---KKFFSEYGQIMNASVMFDKN--TGL-SKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l---~~~f~~~G~i~~~~i~~~~~--t~~-~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+-+||-+||....++.+ .++|.+||.|..|.+.++.. .+. ...-++|+|...++|..|+.. ++.++.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788899998876655 37899999999998877652 111 122389999999999999998 999999999887
Q ss_pred cCCCccc
Q psy630 82 QPSDSHN 88 (347)
Q Consensus 82 ~~~~~~~ 88 (347)
.+...+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7766544
No 259
>KOG0125|consensus
Probab=95.01 E-value=0.018 Score=50.87 Aligned_cols=78 Identities=8% Similarity=0.053 Sum_probs=52.8
Q ss_pred hhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy630 95 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVD 174 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~ 174 (347)
...+..++++|+|+|...-+-||+.+|..||.|..+.|.+..= -+|+..|+.++ +.++|.++ .++|.
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-------GSKGFGFVTme--n~~dadRA----Ra~LH 157 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-------GSKGFGFVTME--NPADADRA----RAELH 157 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-------CCCccceEEec--ChhhHHHH----HHHhh
Confidence 3456778999999999999999999999999998777765421 14555555543 46666665 34444
Q ss_pred ccCChhhhhhh
Q psy630 175 AGWEDKEQEEI 185 (347)
Q Consensus 175 ~~~~~~~~~~~ 185 (347)
...-+-+..++
T Consensus 158 gt~VEGRkIEV 168 (376)
T KOG0125|consen 158 GTVVEGRKIEV 168 (376)
T ss_pred cceeeceEEEE
Confidence 44444433333
No 260
>KOG4307|consensus
Probab=94.93 E-value=0.029 Score=54.36 Aligned_cols=120 Identities=11% Similarity=0.076 Sum_probs=84.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
+...+-+++.++.....+++++|.-. .|-.+.|..+...+...|.++|+|.....++.|+..|...+-.|.+.|.++..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 34556678999999999999999532 24455666666545558999999999999999999888888888887765433
Q ss_pred ccccchh-----------------------------hhhhc---ccccccccCCcccccchhhHHHHhhcccc
Q psy630 87 HNRMAEN-----------------------------MEDRF---NQACDYLPSLVKKLDSSTLLKFYALYKQA 127 (347)
Q Consensus 87 ~~~~~~~-----------------------------~~~~f---~~~~~~v~~l~~~~~~e~l~~~f~~fg~v 127 (347)
......+ ....| ...++||..||..++..++.++|..--.|
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~V 461 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAV 461 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhh
Confidence 2110000 00001 12578999999999998888877754444
No 261
>KOG1996|consensus
Probab=94.80 E-value=0.079 Score=46.10 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCeeEEEEeeeCCCCCcee-EEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 23 NELKKFFSEYGQIMNASVMFDKNTGLSKG-FGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 23 ~~l~~~f~~~G~i~~~~i~~~~~t~~~~g-~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
+++++.+++||.|..|.|...+..-.... -.||+|...++|.+|+.. ||-.|+||.+.-.+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46678889999999998877654333332 379999999999999985 999999998876654
No 262
>smart00362 RRM_2 RNA recognition motif.
Probab=94.69 E-value=0.011 Score=39.96 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=28.9
Q ss_pred cccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 102 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 102 ~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
+++|+++|..++.++++++|..||.+....+...
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC
Confidence 4789999999999999999999999876555443
No 263
>KOG0113|consensus
Probab=94.29 E-value=0.013 Score=50.98 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=50.4
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIAL 169 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~ 169 (347)
.++||+.|+.++++.+|...|..||.|.-..+..++ ..|++|+.||.+ ++...+.+.+|-+.
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~-----vTgkskGYAFIe--ye~erdm~~AYK~a 163 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK-----VTGKSKGYAFIE--YEHERDMKAAYKDA 163 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec-----ccCCccceEEEE--eccHHHHHHHHHhc
Confidence 789999999999999999999999999865555443 578888888876 55577778888553
No 264
>KOG0107|consensus
Probab=94.27 E-value=0.022 Score=45.76 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=33.9
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSW 139 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~ 139 (347)
.+.+||+||+..+++.+|...|..||.+...=+....||+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf 49 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF 49 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc
Confidence 5789999999999999999999999999765555555654
No 265
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.19 E-value=0.055 Score=44.64 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=42.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhc-cCCe---eEEEEeeeCCCCC--ceeEEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSE-YGQI---MNASVMFDKNTGL--SKGFGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i---~~~~i~~~~~t~~--~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
.....+|.|++|||.+|++++.+.+.. ++.- ..+.-.....+.+ ...-|||.|.+.+.+..-... +|+.|.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345669999999999999988886665 5544 3333112221111 235699999999987777664 77766443
No 266
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=94.16 E-value=0.25 Score=41.71 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=61.5
Q ss_pred CcHHHHHHcCChHHHHHHHhhcCCCCccccCCC----CchHHHHHH--HcCCHHHHHHHHhhcC-CCcccc---CCCCCc
Q psy630 256 KNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN----GLNCLHWAC--DRGHLKVVQHLIEKCG-ADVNVT---DSDGDY 325 (347)
Q Consensus 256 ~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~----g~tpLh~A~--~~g~~~~v~~Ll~~~g-a~i~~~---d~~g~T 325 (347)
.+++-.+....-..+..+|+. ......+|-- +.--+-|+- ......+++..|. .| +++|.+ -+.|.|
T Consensus 180 ~~Am~~si~~~K~dva~~lls--~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~-~Glv~vN~~F~~~NSGdt 256 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVALYLLS--KFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFIN-RGLVDVNKKFQKVNSGDT 256 (284)
T ss_pred HHHHHHHhcccHHHHHHHHHh--hcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHh-ccccccchhhhccCCcch
Confidence 355555666666777777776 4444444432 222333332 3345677888887 46 677774 678999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
-|.-|...++.+++.+||++||
T Consensus 257 MLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 257 MLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred HHHhHHhcCcHHHHHHHHHcCc
Confidence 9999999999999999999998
No 267
>KOG0226|consensus
Probab=94.14 E-value=0.035 Score=47.30 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=106.9
Q ss_pred CeEEEeCCCCCCCHHH-H--HHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 9 NKIFVGNLPWTVSHNE-L--KKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~-l--~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
-..|++++-.++..+- + ...|+-|-......+.+++. +.-++++|+.|.......++-.. +++.+.-+++++...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4567777777766554 3 56677666666666776654 67789999999988877777655 666666555665544
Q ss_pred CcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHH
Q psy630 85 DSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMS 164 (347)
Q Consensus 85 ~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~ 164 (347)
..-.... ..+-.-....||.+.|-.+++++.+-..|.+|..-.-..+..++ -.|++|+..|..+.+ ..+
T Consensus 176 tswedPs-l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-----RTgKSkgygfVSf~~--pad--- 244 (290)
T KOG0226|consen 176 TSWEDPS-LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-----RTGKSKGYGFVSFRD--PAD--- 244 (290)
T ss_pred cccCCcc-cccCccccceeecccccccccHHHHHHHHHhccchhhccccccc-----cccccccceeeeecC--HHH---
Confidence 4322211 11111233589999999999999999999999877655554432 367777776666443 443
Q ss_pred HHHHHHHHhhccCChhhhhh
Q psy630 165 KYIALLKEVDAGWEDKEQEE 184 (347)
Q Consensus 165 ~yi~~~~~l~~~~~~~~~~~ 184 (347)
|+..++++.+.+-..++.-
T Consensus 245 -~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 245 -YVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred -HHHHHHhhcccccccchhH
Confidence 4555777777777665443
No 268
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.12 E-value=0.031 Score=47.77 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=31.5
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
.++||+||++.+++++|++||+.||.|....+..+
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D 40 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS 40 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 57899999999999999999999999997776654
No 269
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.04 E-value=0.4 Score=31.91 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=42.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhcc---CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEY---GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~---G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~ 68 (347)
.+|+|+++. +++.++++.+|..| .....|.++-|. -|-|.|.+.+.|.+|+.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 479999985 47778899999988 235588888775 37899999999999985
No 270
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=93.86 E-value=0.029 Score=38.30 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=36.5
Q ss_pred ccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 103 DYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 103 ~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
+||+|||+.+++++|.++|+.||.+....+...+.+ +.+..||..+ -+.++|.+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~------~~~~~a~v~f--~~~~~a~~al 56 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDG------QSRGFAFVEF--SSEEDAKRAL 56 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTS------SEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeecc------ccCCEEEEEe--CCHHHHHHHH
Confidence 589999999999999999999998865555444322 2233455543 3566666653
No 271
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=93.06 E-value=0.039 Score=37.36 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=28.6
Q ss_pred cccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 102 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 102 ~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
+++|++||..+++++++++|+.||.+....+...
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~ 34 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRD 34 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeC
Confidence 3689999999999999999999998876555543
No 272
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=92.92 E-value=0.032 Score=48.96 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=43.9
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|.++|..||.+....+..++ ..++.|+.|+..+ .+.++|..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~-----~~~~~~g~~~v~f--~~~~~~~~a 173 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR-----ETGKSRGFAFVEF--ESEESAEKA 173 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc-----ccCccCceEEEEe--cCHHHHHHH
Confidence 5899999999999999999999999999776666654 3455555555543 334555544
No 273
>smart00360 RRM RNA recognition motif.
Probab=92.92 E-value=0.03 Score=37.57 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=36.5
Q ss_pred ccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 105 LPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 105 v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
|+++|..+++++++++|+.||.+....+...+. .++.++.|+.. ..+.++|..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~-----~~~~~~~a~v~--f~~~~~a~~a 54 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD-----TGKSKGFAFVE--FESEEDAEKA 54 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC-----CCCCCceEEEE--eCCHHHHHHH
Confidence 578999999999999999999887665554432 22333444443 3456666655
No 274
>KOG2135|consensus
Probab=92.65 E-value=0.05 Score=50.44 Aligned_cols=70 Identities=19% Similarity=0.357 Sum_probs=56.9
Q ss_pred EEeCCCCCC-CHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCcc
Q psy630 12 FVGNLPWTV-SHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 12 ~V~nLp~~~-t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~~ 87 (347)
-+.-.|+.. +-.+|..+|.+||.|..|++- .+.--|.|+|.+...|-.|....+.+|+||.|+|.|..+.
T Consensus 376 ~lek~~~glnt~a~ln~hfA~fG~i~n~qv~------~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 376 ALEKSPFGLNTIADLNPHFAQFGEIENIQVD------YSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhccCCCCchHhhhhhhhhhcCcccccccc------CchhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 334445554 567899999999999999873 3345799999999999888888999999999999987664
No 275
>KOG0130|consensus
Probab=92.60 E-value=0.046 Score=41.96 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=45.3
Q ss_pred cccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...-.+||.++.+..+++++.+.|+-||.|...-++.++- .|..|+.|..+ +...++|..+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR-----tGy~KGYaLvE--Yet~keAq~A 130 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR-----TGYVKGYALVE--YETLKEAQAA 130 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc-----cccccceeeee--hHhHHHHHHH
Confidence 3445789999999999999999999999999877777653 44456555554 4445555555
No 276
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.00 E-value=0.61 Score=36.40 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=51.9
Q ss_pred ccCCCeEEEeCCCCCC-CHHHH---HHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccc
Q psy630 5 IRQLNKIFVGNLPWTV-SHNEL---KKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLS 80 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~-t~~~l---~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 80 (347)
...+.+|.|+=|..++ ..+++ -..++.||+|.+|... | +.-|.|+|.+..+|=.|+..-.....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3456788898776665 23344 4556789999998763 3 4579999999999999998633456666666
Q ss_pred ccCCC
Q psy630 81 IQPSD 85 (347)
Q Consensus 81 v~~~~ 85 (347)
..+-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 65543
No 277
>KOG4285|consensus
Probab=91.89 E-value=0.55 Score=41.26 Aligned_cols=71 Identities=13% Similarity=0.309 Sum_probs=53.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCc-cccccCCCc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGS-RLSIQPSDS 86 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~-~l~v~~~~~ 86 (347)
..|-|=++|+.-+.- |-.+|++||.|+..... ...-+-+|.|.+.-.|++|+..+|..|+|. .|-|.++..
T Consensus 198 ~WVTVfGFppg~~s~-vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVSI-VLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccchhH-HHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 445555888876544 66789999999887653 334589999999999999999999999875 345666544
No 278
>KOG2202|consensus
Probab=91.60 E-value=0.081 Score=45.28 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=46.1
Q ss_pred HHHHHHh-ccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 24 ELKKFFS-EYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 24 ~l~~~f~-~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
++...|+ +||+|.++.|-.+. ...-.|=+||.|...++|++|+.. |+--+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3344444 89999998765543 234568899999999999999986 999999999876654
No 279
>KOG4207|consensus
Probab=89.98 E-value=0.093 Score=43.43 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=40.1
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCC-CHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM-AKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~-~~~eA~~~ 165 (347)
..+-|-||...++.++|..+|.+||.|. ++.+|+. ......++.||..+.+. ..++|+.+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vg--DVyIPrd---r~Tr~sRgFaFVrf~~k~daedA~da 74 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVG--DVYIPRD---RYTRQSRGFAFVRFHDKRDAEDALDA 74 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCccc--ceecccc---cccccccceeEEEeeecchHHHHHHh
Confidence 4677999999999999999999999986 5555442 12344455566555443 23344443
No 280
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=89.94 E-value=0.74 Score=32.11 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=31.7
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhh
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 311 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 311 (347)
..+..|..|+..++.+.+.+ .+ .++ ...|..|+..-+.+++.+|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~-~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLK-KN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHH-Hh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 45567777777777777665 11 111 4568888888888888888874
No 281
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.78 E-value=4 Score=30.73 Aligned_cols=65 Identities=12% Similarity=0.260 Sum_probs=44.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcc-CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEY-GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG 76 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 76 (347)
.+.+...|..++.++|..+.+.+ ..|..++|+++. ..++-.+.+.|.+...|..-... ||..|+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444445555665555554 457788888864 34667799999999999988875 8887753
No 282
>KOG0108|consensus
Probab=88.48 E-value=0.14 Score=48.21 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=61.3
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccCChh
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDK 180 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~~~~~~ 180 (347)
..+||+|+|+++++++|..+|+..|.|..-+...++. .|+.|+.+|.++++ .++|..+ ++.|.. .+-
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~-----tG~~~G~~f~~~~~--~~~~~~a----~~~lNg--~~~ 85 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE-----TGKPKGFGFCEFTD--EETAERA----IRNLNG--AEF 85 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc-----CCCcCceeeEecCc--hhhHHHH----HHhcCC--ccc
Confidence 5789999999999999999999999999877777765 66777777777655 3444443 233321 111
Q ss_pred hhhhhhccccchhhhHHHHHHHhhh
Q psy630 181 EQEEINWDWKPNQKAMSKYIALLNE 205 (347)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (347)
..+.++.+|+...+...+...+.+.
T Consensus 86 ~gr~l~v~~~~~~~~~~~~~~~~~~ 110 (435)
T KOG0108|consen 86 NGRKLRVNYASNRKNAERSLASHNA 110 (435)
T ss_pred CCceEEeecccccchhHHHHhhccc
Confidence 2234566676665655444444433
No 283
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.25 E-value=0.15 Score=36.64 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=45.9
Q ss_pred EEEEEcCHHHHHHHHhc--CCCccCCcccccc--CCCcccccchhhhhhcccccccccCCcccccchhhHHHHh
Q psy630 53 GFVTFQNKEAVDKVFST--DSHVLEGSRLSIQ--PSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYA 122 (347)
Q Consensus 53 afV~f~~~~~a~~a~~~--~~~~~~g~~l~v~--~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~ 122 (347)
|.|+|.+..-|+..+.. ....+++..+.|. +.....-..-+........++.|.++|..++++.+++...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 67999999999999986 4444555555443 3222221111222233457889999999999999887554
No 284
>KOG0533|consensus
Probab=88.20 E-value=0.22 Score=43.06 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=34.6
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCc
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSW 139 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~ 139 (347)
..++|.|||..+.+++|++||..|+++.-+.++.++.|.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~ 122 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGR 122 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCC
Confidence 578999999999999999999999988888888877553
No 285
>KOG0151|consensus
Probab=87.75 E-value=0.28 Score=47.98 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=46.0
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
.++||+|+++.++++.|+..|+.||++...++..++...- ..+.+-.+|++ .|++.+|.++.
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE--k~r~r~cgfva--fmnR~D~era~ 236 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE--KRRERNCGFVA--FMNRADAERAL 236 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhh--hccccccceee--ehhhhhHHHHH
Confidence 6899999999999999999999999999989888765211 11222234443 67777776663
No 286
>KOG2416|consensus
Probab=87.21 E-value=0.37 Score=46.18 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc---CCccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFS-EYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL---EGSRLSI 81 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l~v 81 (347)
..+-|||.||-.-+|.-+|+.++. ..|.|....| .+-+..|||.|.+.+.|...... ++..+ +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 346799999999999999999998 5666666633 23357899999999988877764 65554 3556665
Q ss_pred cCCC
Q psy630 82 QPSD 85 (347)
Q Consensus 82 ~~~~ 85 (347)
.+..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 5543
No 287
>KOG2505|consensus
Probab=85.83 E-value=0.64 Score=43.77 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=39.0
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHH
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC 297 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~ 297 (347)
...+.-..|+||+|+..+...++..++. .++|+..+|..|+||..+++
T Consensus 424 e~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 424 EANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence 3344557799999988777777777777 57999999999999999987
No 288
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=82.40 E-value=3 Score=34.30 Aligned_cols=47 Identities=23% Similarity=0.450 Sum_probs=41.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy630 291 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 344 (347)
Q Consensus 291 tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~ 344 (347)
.-|.+|+..|-+..+-..|+ +|.+++. +.|..|+..+|..++.+++.
T Consensus 145 ~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 145 QHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 35789999999999999998 7999875 79999999999999999875
No 289
>KOG0116|consensus
Probab=82.12 E-value=0.77 Score=43.11 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=32.9
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCC
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP 137 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p 137 (347)
..|||+|||.+++..+|.++|..||.|+.+.+....|
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~ 325 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP 325 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEecc
Confidence 4689999999999999999999999999888777553
No 290
>KOG2591|consensus
Probab=80.55 E-value=4.2 Score=39.03 Aligned_cols=66 Identities=12% Similarity=0.345 Sum_probs=52.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHh--ccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCcccc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFS--EYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLS 80 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~--~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~ 80 (347)
.+-|.++-||..+..++++.+|+ .+-++.+|.+-.+.. =||+|.+..+|+.|.+. ..+.|.|++|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45678899999999999999996 467788888765542 58999999999988863 56667787764
No 291
>KOG4676|consensus
Probab=79.67 E-value=0.29 Score=44.41 Aligned_cols=74 Identities=9% Similarity=0.010 Sum_probs=58.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
++++|.+|+..+-..++.+.|..+|.|...++. .+-...+|-+.|...-+...|+..++..+.-+...+....|
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhcCc
Confidence 789999999999999999999999999887764 24445678899999888888888877777644444443333
No 292
>KOG4660|consensus
Probab=77.74 E-value=2.9 Score=40.04 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=47.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFS-EYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
+++-|.|+|...|...|.+.-. ..|.-..+.++.|-.+..+.|||||.|.+.+++..+.+. +|+..
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKW 456 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCch
Confidence 4566677777766665555432 356666777888877788899999999999998888875 65553
No 293
>KOG4208|consensus
Probab=77.23 E-value=0.51 Score=39.22 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=51.3
Q ss_pred ccccccCCcccccchhhHHHHhhc-cccceecccCCCCCccchhHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhhc
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALY-KQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQM----AKSEAMSKYIALLKEVDA 175 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~f-g~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~----~~~eA~~~yi~~~~~l~~ 175 (347)
..+++..+|.-+.+..++.+|+.| |.++...... ....|.+|+.||.++++. -.+|+|..|.-+=.-|.-
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR-----nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR-----NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeec-----ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 567899999999999999999999 5555433322 234788899999988775 455888888644444433
Q ss_pred cCC
Q psy630 176 GWE 178 (347)
Q Consensus 176 ~~~ 178 (347)
+..
T Consensus 125 ~vm 127 (214)
T KOG4208|consen 125 HVM 127 (214)
T ss_pred EEe
Confidence 433
No 294
>KOG0132|consensus
Probab=76.97 E-value=1.2 Score=44.22 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=33.4
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
..+++|+.|+..+++.+|..+|..||+|.+..+..++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R 457 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR 457 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC
Confidence 3689999999999999999999999999987777664
No 295
>KOG2253|consensus
Probab=76.92 E-value=1.4 Score=42.89 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=54.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
..-++||+|+...+..+-++.....+|.|.++.... |||-.|........|+.. ....++|..+.+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345799999999999999999999999987765432 999999999988888875 6666777766554
No 296
>KOG0804|consensus
Probab=76.77 E-value=11 Score=35.27 Aligned_cols=67 Identities=12% Similarity=0.301 Sum_probs=55.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhcc-CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEY-GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG 76 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 76 (347)
.+.|+|=.+|..++--+|..|...+ -.|..++|++|. -.++-...+.|.+..+|..-... ||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999998764 568899999953 23445589999999999998875 9888864
No 297
>KOG0115|consensus
Probab=75.32 E-value=2.6 Score=36.33 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=45.9
Q ss_pred HHHHHh-cCCCccCCccccccCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccC
Q psy630 63 VDKVFS-TDSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 134 (347)
Q Consensus 63 a~~a~~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~ 134 (347)
|..|-. +++....|+.++|.++.. +.++|.|+..-++.+.+.+-|+.||++...-+..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~--------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~v 65 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH--------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKV 65 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc--------------ceEEEEecchhhhhHHHHHhhhhcCccchheeee
Confidence 344443 378888899999988743 5689999999999999999999999997644444
No 298
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=74.80 E-value=5.6 Score=33.01 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C--CCccCCccccccCCCc
Q psy630 22 HNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D--SHVLEGSRLSIQPSDS 86 (347)
Q Consensus 22 ~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~l~v~~~~~ 86 (347)
...|+++|..|+.+.....++. -+=..|.|.+.+.|.+|... + +..+.|..+++.+++.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4678999999999888776643 23478999999999999986 7 8899999999887743
No 299
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=73.25 E-value=17 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.407 Sum_probs=39.6
Q ss_pred chHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy630 290 LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 290 ~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 345 (347)
...|..|...|+.+|++.+++. + .++ ...|..|+...+.+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~-~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKK-N-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4568999999999999999973 3 222 4579999999999999999874
No 300
>KOG0415|consensus
Probab=66.47 E-value=2.7 Score=37.90 Aligned_cols=69 Identities=10% Similarity=0.050 Sum_probs=48.1
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcc
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAG 176 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~~~ 176 (347)
..+||=.|.+-++.++|..+|+.||.+....+..++. .|.+=-.||.+ .-..+.+.++|+++=+-|..+
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k-----tgdsLqyaFiE--Fen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK-----TGDSLQYAFIE--FENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEeccc-----ccchhheeeee--ecchhhHHHHHhhhcceeecc
Confidence 4667777777788999999999999999877766643 22222235554 345777888898776666554
No 301
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=63.79 E-value=11 Score=29.87 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred CCeEEEeCCC--CCCCHHHHHHHHhc-cCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 8 LNKIFVGNLP--WTVSHNELKKFFSE-YGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 8 ~~~l~V~nLp--~~~t~~~l~~~f~~-~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
.+...|+.+. ...+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.+++...+..+.|..+.++.-
T Consensus 15 ~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 15 WQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRW 89 (153)
T ss_pred cCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhh
Confidence 3445566663 33556667666643 443333333221 247899999999999999988888888988888766
Q ss_pred CcccccchhhhhhcccccccccCCccc-ccchhhHHHHhhccccceecccCC
Q psy630 85 DSHNRMAENMEDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 85 ~~~~~~~~~~~~~f~~~~~~v~~l~~~-~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
.+...... ........=+.|.+||.. .+++-+..+-+..|.+...+..+.
T Consensus 90 ~~~~~~~~-~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 90 SPDFNPSE-VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccc-cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 54332111 111122344677899976 677788889999999886666554
No 302
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=63.59 E-value=17 Score=31.00 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCcccc---CCCCchHHHHHHHcCCHHHHHHHHhhcCCC
Q psy630 268 DMLVKQLTKLKDFNINQL---DENGLNCLHWACDRGHLKVVQHLIEKCGAD 315 (347)
Q Consensus 268 ~~~~~lL~~~~~~~~~~~---d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~ 315 (347)
..+.+..+..+-+++|.+ -+.|.|-|--|...+..+++.+||+ +||-
T Consensus 230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA~ 279 (284)
T PF06128_consen 230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGAI 279 (284)
T ss_pred HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH-cCcc
Confidence 334444444255777763 5689999999999999999999999 7984
No 303
>KOG3152|consensus
Probab=62.86 E-value=4.5 Score=34.90 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=27.2
Q ss_pred cccccccCCcccccchhhHHHHhhccccce
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATV 129 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~ 129 (347)
...+|++++|+.++...|+++++.||+|..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGR 103 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGR 103 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccce
Confidence 457899999999999999999999999853
No 304
>KOG0111|consensus
Probab=62.17 E-value=1.5 Score=36.77 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=32.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
...++||++|..++++.-|...|=+||.|+...++.+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD 45 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD 45 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccc
Confidence 3468999999999999999999999999986666654
No 305
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=58.53 E-value=44 Score=22.55 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 19 TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 19 ~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
.++-++++..++.|+-. +|..++ | | =||.|.+..+|+++... ++..+.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 46778999999999742 333443 2 3 48999999999999986 88877665543
No 306
>KOG4574|consensus
Probab=57.58 E-value=6.7 Score=39.67 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=55.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc--CCccccccCCCc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL--EGSRLSIQPSDS 86 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~v~~~~~ 86 (347)
+.++.|.+-..+...|..+|.+||.|.+.+..++-. .|.|.|...+.|-.|+.. +|+.+ .|-+.+|..+..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345566677788888999999999999998877753 799999999999999975 66554 466677765544
No 307
>KOG4410|consensus
Probab=57.41 E-value=12 Score=32.75 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEeeeCCCCCceeEEEEEEcCHH
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQI-MNASVMFDKNTGLSKGFGFVTFQNKE 61 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~t~~~~g~afV~f~~~~ 61 (347)
.+-||++|||.++.-.+|+..+.+.|-+ .++.+ .-+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 3569999999999999999999876633 23333 335678999997643
No 308
>KOG1855|consensus
Probab=57.25 E-value=8.8 Score=35.70 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=32.5
Q ss_pred cccccccccCCcccccchhhHHHHhhccccceecccCCCCC
Q psy630 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPS 138 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~ 138 (347)
+...+|.+-|||.+-..+.|.++|+.+|.|.. |++.+||
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Iks--IRIckPg 267 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKS--IRICKPG 267 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceee--eeecCCC
Confidence 55678999999999999999999999999985 4445554
No 309
>KOG4454|consensus
Probab=56.21 E-value=2.6 Score=35.45 Aligned_cols=66 Identities=30% Similarity=0.407 Sum_probs=53.7
Q ss_pred CCeEEEeC----CCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 8 LNKIFVGN----LPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 8 ~~~l~V~n----Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
.++++-|+ |...++++.+.+.|+.-|.+..+++.++.. |+++-++|+++....+.-.++.. .+...
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 45677888 888899999999999999999999998876 88999999999877666666654 44433
No 310
>KOG0153|consensus
Probab=55.49 E-value=7.6 Score=35.08 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=31.1
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
.++||++|-+.+++.+|++.|.+||.+.+..+...
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~ 263 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR 263 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc
Confidence 68899999999999999999999999987666543
No 311
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=54.54 E-value=34 Score=25.99 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=29.1
Q ss_pred CCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcC-HHHHHHHHhc
Q psy630 20 VSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQN-KEAVDKVFST 69 (347)
Q Consensus 20 ~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~-~~~a~~a~~~ 69 (347)
++.+.|.+.|+.|..+. ++.+.++ .-++|++.|.|.+ ..-...|+++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 35678999999998874 5566655 3578999999976 4456666654
No 312
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.52 E-value=40 Score=22.40 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.2
Q ss_pred HHHHHHHhccCCeeEEEE
Q psy630 23 NELKKFFSEYGQIMNASV 40 (347)
Q Consensus 23 ~~l~~~f~~~G~i~~~~i 40 (347)
.+|+++|++.|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999976655
No 313
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=52.35 E-value=21 Score=24.24 Aligned_cols=62 Identities=11% Similarity=0.236 Sum_probs=43.7
Q ss_pred HHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 23 NELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 23 ~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
.+|.+-|...| .+..+.-+..+.++.+...-||+......... -++-..+.|+++.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCcc
Confidence 46778888888 46788888888777777888888876533222 2245567888888876644
No 314
>KOG4335|consensus
Probab=52.31 E-value=15 Score=35.09 Aligned_cols=71 Identities=15% Similarity=-0.112 Sum_probs=56.2
Q ss_pred HHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 260 EWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 260 ~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
.++|.|....+...++. ....+|.....++++||++...+|.+.+........++-|..+..|.+++.+..
T Consensus 149 ~a~~lg~vs~l~~v~lk-~k~~p~~l~gq~sp~lll~~~s~h~~~v~~d~~~~~~~rn~~~~~~re~~~~~e 219 (558)
T KOG4335|consen 149 NASCLGLVSPLLEVQLK-PKHQPNYLLGQQSPELLLRFTSAHDDDVAMDEPFLQFRRNVFFPKGRELQIIDE 219 (558)
T ss_pred cccceeccCHHHHHhhc-cccCCchhhccCCchhhhhccCCchhhhhccccchHHhhhhhcccCcchhhhHH
Confidence 45678888888888887 667788888889999999999999998887776445666777888888876653
No 315
>KOG2318|consensus
Probab=51.46 E-value=73 Score=31.18 Aligned_cols=71 Identities=20% Similarity=0.398 Sum_probs=53.7
Q ss_pred cCCCeEEEeCCCCC-CCHHHHHHHHhcc----CCeeEEEEeeeC----------CCCC----------------------
Q psy630 6 RQLNKIFVGNLPWT-VSHNELKKFFSEY----GQIMNASVMFDK----------NTGL---------------------- 48 (347)
Q Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~i~~~~i~~~~----------~t~~---------------------- 48 (347)
..+++|-|=|+.|+ +...+|.-+|..| |.|.+|.|.... .+|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35679999999998 6888999888865 689999875321 1121
Q ss_pred ---------------ceeEEEEEEcCHHHHHHHHhc-CCCccCC
Q psy630 49 ---------------SKGFGFVTFQNKEAVDKVFST-DSHVLEG 76 (347)
Q Consensus 49 ---------------~~g~afV~f~~~~~a~~a~~~-~~~~~~g 76 (347)
..-||.|+|.+...|...... +|..|..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 124799999999999998886 8888753
No 316
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=50.97 E-value=15 Score=30.55 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy630 148 YNAWNSLGQMAKSEAMSKYIALLKEV 173 (347)
Q Consensus 148 ~~aw~~~~~~~~~eA~~~yi~~~~~l 173 (347)
-.+|..+.+++..+|+.+|+++++.+
T Consensus 174 ~~~~~~~~~~s~~~a~~~yl~~~~~l 199 (207)
T smart00295 174 VSLHKELIGLSPEEAKLKYLELAEKL 199 (207)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhccc
Confidence 46899999999999999999999976
No 317
>KOG2891|consensus
Probab=50.38 E-value=10 Score=33.16 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=42.1
Q ss_pred ccccccCCccc------------ccchhhHHHHhhccccceecccCCCCC--------------ccchhHHHHHHHHHHc
Q psy630 101 ACDYLPSLVKK------------LDSSTLLKFYALYKQATVGQCNIDKPS--------------WYNMEAKSKYNAWNSL 154 (347)
Q Consensus 101 ~~~~v~~l~~~------------~~~e~l~~~f~~fg~v~~g~~~~~~p~--------------~~~~~~~~K~~aw~~~ 154 (347)
.++|+.++|-. ++++-|...|..||.|..++++...|- .|.+-|..-+.|+.++
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57788887742 456678899999999999998886652 1233344445566553
Q ss_pred -CCCCHHHHHHHH
Q psy630 155 -GQMAKSEAMSKY 166 (347)
Q Consensus 155 -~~~~~~eA~~~y 166 (347)
+++-...||.+.
T Consensus 230 meykgfa~amdal 242 (445)
T KOG2891|consen 230 MEYKGFAQAMDAL 242 (445)
T ss_pred HHHHhHHHHHHHH
Confidence 333444555544
No 318
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=49.66 E-value=7.6 Score=28.96 Aligned_cols=33 Identities=3% Similarity=0.012 Sum_probs=20.6
Q ss_pred cccccCCcccccchhhHHHHhhccccceecccC
Q psy630 102 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 134 (347)
Q Consensus 102 ~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~ 134 (347)
.+++.+++.+++.++|+..|+.|+.|...++..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~ 35 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR 35 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC
Confidence 467788999999999999999999998777765
No 319
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=47.74 E-value=16 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHh
Q psy630 149 NAWNSLGQMAKSEAMSKYIALLKEV 173 (347)
Q Consensus 149 ~aw~~~~~~~~~eA~~~yi~~~~~l 173 (347)
..|..+.+++..+|+..|+++++.+
T Consensus 94 ~~~~~l~~~s~~~a~~~fl~~~~~~ 118 (126)
T PF00373_consen 94 EQHKKLRGMSPEEAKLQFLQICQSL 118 (126)
T ss_dssp HHHHHTTT--HHHHHHHHHHHHCTS
T ss_pred HHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 6889999999999999999999864
No 320
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=44.25 E-value=10 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=19.0
Q ss_pred ccccCCcccccchhhHHHHhhccccce
Q psy630 103 DYLPSLVKKLDSSTLLKFYALYKQATV 129 (347)
Q Consensus 103 ~~v~~l~~~~~~e~l~~~f~~fg~v~~ 129 (347)
+|--..|......+|.++|+.||+|.+
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~V 37 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYV 37 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEE
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEE
Confidence 344448999999999999999999975
No 321
>KOG4209|consensus
Probab=40.29 E-value=6.7 Score=33.86 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=47.4
Q ss_pred hcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHH
Q psy630 97 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYI 167 (347)
Q Consensus 97 ~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi 167 (347)
......+||+|+....+.+++...|.-+|++....+..++ +.|+.|..||.. +.+.+..+++|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~-----~~~~~k~~~yve--f~~~~~~~~ay~ 161 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDK-----FRGHPKGFAYVE--FSSYELVEEAYK 161 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccc-----cCCCcceeEEEe--cccHhhhHHHhh
Confidence 3455688999999999999999999999999755555544 245567777776 555666677765
No 322
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=38.10 E-value=64 Score=23.09 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=32.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQN 59 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~ 59 (347)
.-+|||+++..+.+.--....+..+.-..+-+..+. ...||+|-++..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeCC
Confidence 459999999999887666666655544444333332 267999988844
No 323
>KOG4483|consensus
Probab=37.07 E-value=78 Score=29.46 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQ-IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~ 69 (347)
.-|=|-++|.....++|-..|..|+. ...|.++-|. .||-.|.+...|..|+.+
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34667799999988999999999864 4577777664 699999999999999876
No 324
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.93 E-value=67 Score=28.58 Aligned_cols=58 Identities=10% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCC-------CCCceeEEEEEEcCHHHHH
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKN-------TGLSKGFGFVTFQNKEAVD 64 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-------t~~~~g~afV~f~~~~~a~ 64 (347)
.+|.|-..|+..+++--.+...|-+||+|.+|.++.+.. ..+......+-|-+.+.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 457788899998898888888889999999999987651 1234466778887776543
No 325
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.48 E-value=77 Score=27.93 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=35.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGS 77 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 77 (347)
...|+|||+.++..-+..+++..-.+....+|. ..+-|++-+...+..-.|+
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~----------------QkEva~Rl~A~pgsk~Yg~ 148 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMV----------------QKEVAERLVAKPGSKDYGR 148 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEe----------------HHHHHHHHhCCCCCcccch
Confidence 466999999999999999987654443444433 2466777666655554444
No 326
>KOG2891|consensus
Probab=35.10 E-value=36 Score=29.85 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=27.0
Q ss_pred CCeEEEeCCCCC------------CCHHHHHHHHhccCCeeEEEEe
Q psy630 8 LNKIFVGNLPWT------------VSHNELKKFFSEYGQIMNASVM 41 (347)
Q Consensus 8 ~~~l~V~nLp~~------------~t~~~l~~~f~~~G~i~~~~i~ 41 (347)
..+||+.+||-. .+++-|+..|+.||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 347888888742 4567789999999999998875
No 327
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=34.78 E-value=36 Score=23.37 Aligned_cols=57 Identities=12% Similarity=0.324 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHhccCC-----eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 19 TVSHNELKKFFSEYGQ-----IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 19 ~~t~~~l~~~f~~~G~-----i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
.++..+|..++..-+. |-.|.|.. .|.||+-... .+..++.. ++..+.|+++.|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3677788888865543 44555532 3889998875 45566654 899999999998754
No 328
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=34.02 E-value=78 Score=21.45 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=42.7
Q ss_pred HHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 23 NELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 23 ~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
++|.+-|...| .|..+.-++.+.++.+...-||++........++ +-..+.+..+.|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCC
Confidence 46777787777 5677777777767777888899988765422222 44567788888876644
No 329
>KOG2193|consensus
Probab=33.14 E-value=2.4 Score=39.14 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=59.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEE-eeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASV-MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
..|++-|+|+|+....+-|..++.+||.+..|.. +++.. .-..-|+|...+.+..|+.. ++..+....+.|.+.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 3467889999999999999999999999988754 33332 33445788889999999975 999999888888764
No 330
>KOG4661|consensus
Probab=32.86 E-value=28 Score=33.80 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=32.2
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCC--CCC
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID--KPS 138 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~--~p~ 138 (347)
.+++|.+|...+-..+|+.+|++||.|.-.++.+. .||
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPG 445 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPG 445 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCC
Confidence 57899999999999999999999999988777653 454
No 331
>KOG3702|consensus
Probab=32.36 E-value=38 Score=33.54 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=79.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCcccc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNR 89 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~~~~ 89 (347)
+||+.|--..-+..-+..++...+.+...+++.....+-..+-++.+|.-...+..|..+....+..+.+.+........
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks~p~Ck~~~ 592 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKSHPGCKFGK 592 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceeccccccccc
Confidence 67777666666666777888888888888888877777777789999999888877777655666665555544333333
Q ss_pred cchhhhhhccccccc----ccCCcccccchhhHHHHhhccccceecccC
Q psy630 90 MAENMEDRFNQACDY----LPSLVKKLDSSTLLKFYALYKQATVGQCNI 134 (347)
Q Consensus 90 ~~~~~~~~f~~~~~~----v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~ 134 (347)
.....+..+..+.-+ ...||+.++-..+..+...|+....-.|.+
T Consensus 593 kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~pnCrnm~C~F 641 (681)
T KOG3702|consen 593 KCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYRPNCRNMQCKF 641 (681)
T ss_pred ccccccCcccccCCCCCCccccCCCCCCCCCccccceeccCcCCccccc
Confidence 333333334333333 355666555455555555555554445554
No 332
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=32.00 E-value=77 Score=23.24 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=31.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCH
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~ 60 (347)
.-||||+++..+.+.--..+-+.++.-..+-+-.+ ....||+|-++...
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 45999999999887755555555554333333322 23349999988764
No 333
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.76 E-value=27 Score=32.35 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred CCeEEEeCCCCCCCHH--------HHHHHHhc--cCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh
Q psy630 8 LNKIFVGNLPWTVSHN--------ELKKFFSE--YGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~ 68 (347)
.|.+|+.+.+...+.. ++..+|.. .+++..++.-++.....++|-.|++|.....+++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567777777766555 88999988 5677777777766556788999999999999999885
No 334
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=31.21 E-value=1.1e+02 Score=22.46 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=30.1
Q ss_pred eEEEeCCCCCCCHHHHH---HHHhccCCeeEEEE--eeeCCCCCceeEEEEEEc
Q psy630 10 KIFVGNLPWTVSHNELK---KFFSEYGQIMNASV--MFDKNTGLSKGFGFVTFQ 58 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~---~~f~~~G~i~~~~i--~~~~~t~~~~g~afV~f~ 58 (347)
..|+.+||+++.+.++. ..|..++.-..|.. ......+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 45899999999998774 55555554344433 122344667788776665
No 335
>KOG3836|consensus
Probab=30.53 E-value=13 Score=36.44 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=28.1
Q ss_pred CCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc
Q psy630 278 KDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 319 (347)
Q Consensus 278 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~ 319 (347)
++..++..|..|.+|+|+++..|...+.+.++. +..+++..
T Consensus 418 ~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~-~~~~~~~~ 458 (605)
T KOG3836|consen 418 KGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLN-CKVAISLK 458 (605)
T ss_pred ccCccchhcccccccccccCCCCCHHHhhhhhh-hhhhhhcc
Confidence 456677777777788888877777777777765 44444443
No 336
>KOG3836|consensus
Probab=25.69 E-value=16 Score=35.78 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=39.5
Q ss_pred HHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy630 296 ACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 344 (347)
Q Consensus 296 A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~ 344 (347)
|+..+-...+-.|++ .|+.++..|..|.||+|+++..|...+...++.
T Consensus 403 ~~~~~~ss~v~~lik-~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~ 450 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIK-KGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLN 450 (605)
T ss_pred hhhcCCccceeeeec-ccCccchhcccccccccccCCCCCHHHhhhhhh
Confidence 555555556666777 699999999999999999999999999887654
No 337
>KOG0156|consensus
Probab=25.20 E-value=1.1e+02 Score=29.88 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=45.1
Q ss_pred EEEeCCCCCCCH---HHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccc
Q psy630 11 IFVGNLPWTVSH---NELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 79 (347)
Q Consensus 11 l~V~nLp~~~t~---~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 79 (347)
=+||||+.--.. ..+.++-++||+|-.+++-. .-.|...+.+.|..++..++..+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 457777654433 45556666899999888722 2368888999999999999999999986
No 338
>KOG4008|consensus
Probab=23.45 E-value=76 Score=27.30 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=27.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN 37 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~ 37 (347)
.+.+.+|+-|+|...|++.|.++.++.|.+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 45578999999999999999999999995543
No 339
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.70 E-value=1.4e+02 Score=26.80 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=34.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGS 77 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 77 (347)
.+.|+|||+.++...+..+++....+.. +.+.| ..+-|++-+...|..-.|+
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~---------------~vlm~-QkEvA~Rl~A~pg~k~y~~ 154 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC---------------AVLMF-QKEFALRLLAQPGDELYCR 154 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce---------------eeeee-hHHHHHHHhcCCCCcccCH
Confidence 3678999999999999888864333322 33333 3677888777666555553
No 340
>COG5584 Predicted small secreted protein [Function unknown]
Probab=20.77 E-value=2.1e+02 Score=20.92 Aligned_cols=31 Identities=13% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHHHHhccCCeeEEEEeeeCC
Q psy630 15 NLPWTVSHNELKKFFSEYGQIMNASVMFDKN 45 (347)
Q Consensus 15 nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 45 (347)
|+++...-.-+++.|+++|+|....|...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 5666666677899999999999888876654
No 341
>KOG4365|consensus
Probab=20.56 E-value=25 Score=32.92 Aligned_cols=75 Identities=9% Similarity=-0.121 Sum_probs=53.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 84 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~ 84 (347)
.+.|+..+|...++.++.-.|..||.|.-+...+.-..|...-.+||.-.+.+ +..++. +....+.|..+++..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~-~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKAN-GPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccC-cccccCHHHHhhhhhhhhhhhcC
Confidence 34677889999999999999999999988776655555666778888877644 344443 3555566666666544
No 342
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.32 E-value=81 Score=18.43 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHhccC
Q psy630 18 WTVSHNELKKFFSEYG 33 (347)
Q Consensus 18 ~~~t~~~l~~~f~~~G 33 (347)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999998764
No 343
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=20.25 E-value=96 Score=27.88 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=13.1
Q ss_pred CCCCccccCCCCchHH-HHHHHcCCHHH
Q psy630 278 KDFNINQLDENGLNCL-HWACDRGHLKV 304 (347)
Q Consensus 278 ~~~~~~~~d~~g~tpL-h~A~~~g~~~~ 304 (347)
.+..+..+..-|-|++ |-|..+|.+++
T Consensus 59 ~~~kv~~~~~lG~t~v~~~Al~~G~IDi 86 (300)
T COG1732 59 NGIKVEDKTGLGGTAVVRNALKSGDIDI 86 (300)
T ss_pred cCCceeeccCCCchHHHHHHHHcCCCCe
Confidence 4444555555555533 55555554444
No 344
>KOG4213|consensus
Probab=20.23 E-value=1.1e+02 Score=25.11 Aligned_cols=48 Identities=27% Similarity=0.102 Sum_probs=29.7
Q ss_pred CCeeEEEEeeeCCC-CCceeEEEEEEcCHHHHHHHHhcCCCccCCcccc
Q psy630 33 GQIMNASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLS 80 (347)
Q Consensus 33 G~i~~~~i~~~~~t-~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 80 (347)
|.+..+.+-+-... ...+|-.||+|.+.+.+.+.+........-..|.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~ 180 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELK 180 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHH
Confidence 67766665332211 1357889999999999988776543333333333
No 345
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.17 E-value=4.6e+02 Score=20.95 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=40.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhc---cCCeeEEEEeeeCCC---------CCcee-EEEEEEcCHH
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSE---YGQIMNASVMFDKNT---------GLSKG-FGFVTFQNKE 61 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~---~G~i~~~~i~~~~~t---------~~~~g-~afV~f~~~~ 61 (347)
.+..+||+.-++.-+++++.++.-++ -+.+.+|++-+.+.. ...+. |-+|.|.+-.
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 34478999999999999999988875 466777777655432 12234 8888888744
Done!