Query psy630
Match_columns 347
No_of_seqs 449 out of 5727
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:53:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.9 2.2E-24 7.6E-29 181.5 7.5 155 4-166 9-163 (196)
2 4f02_A Polyadenylate-binding p 99.9 2.7E-24 9.4E-29 183.5 7.9 146 6-165 13-159 (213)
3 1fxl_A Paraneoplastic encephal 99.9 1.5E-23 5.2E-28 171.6 8.3 144 8-165 2-146 (167)
4 1b7f_A Protein (SXL-lethal pro 99.9 2.1E-23 7.2E-28 171.0 6.8 145 7-165 2-147 (168)
5 2cjk_A Nuclear polyadenylated 99.9 1.1E-23 3.9E-28 172.5 5.1 144 7-165 2-145 (167)
6 3md3_A Nuclear and cytoplasmic 99.9 5.7E-23 1.9E-27 168.0 6.1 144 9-165 1-145 (166)
7 2qfj_A FBP-interacting repress 99.9 1.7E-22 5.7E-27 172.6 8.0 153 6-165 26-183 (216)
8 4gpm_A Engineered protein OR26 99.9 1.1E-21 3.6E-26 161.2 12.2 100 246-347 61-160 (169)
9 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.2E-21 4.3E-26 144.2 10.8 92 254-347 1-92 (93)
10 4f25_A Polyadenylate-binding p 99.9 7.9E-22 2.7E-26 151.3 9.8 109 6-116 3-113 (115)
11 1hbk_A ACBP, acyl-COA binding 99.9 1.4E-22 4.9E-27 145.4 5.2 85 95-179 3-89 (89)
12 3nmr_A Cugbp ELAV-like family 99.9 1.6E-21 5.5E-26 160.8 12.3 145 7-165 2-152 (175)
13 1st7_A ACBP, acyl-COA-binding 99.9 1.2E-22 4E-27 144.9 3.9 84 95-178 2-85 (86)
14 2lbb_A Acyl COA binding protei 99.9 2.6E-22 9E-27 144.5 4.8 84 96-179 12-96 (96)
15 2cop_A Acyl-coenzyme A binding 99.9 4.7E-22 1.6E-26 147.5 5.6 88 93-180 7-94 (109)
16 3epy_A Acyl-COA-binding domain 99.8 4.1E-22 1.4E-26 142.4 4.8 84 94-177 4-87 (89)
17 2cb8_A Acyl-COA-binding protei 99.8 7.5E-22 2.5E-26 140.7 4.8 84 95-178 3-86 (87)
18 4gpm_A Engineered protein OR26 99.8 1.2E-20 4.2E-25 154.8 12.5 100 246-347 28-127 (169)
19 4fxv_A ELAV-like protein 1; RN 99.8 7.8E-21 2.7E-25 141.4 9.9 80 7-86 18-98 (99)
20 2cqu_A Peroxisomal D3,D2-enoyl 99.8 1.8E-21 6.1E-26 145.2 5.9 88 94-181 16-103 (116)
21 1fje_B Nucleolin RBD12, protei 99.8 3.6E-21 1.2E-25 158.9 5.9 121 4-130 9-129 (175)
22 3tyt_A Heterogeneous nuclear r 99.8 5.8E-21 2E-25 161.5 6.7 146 7-166 3-182 (205)
23 3pgw_A U1-A; protein-RNA compl 99.8 3.3E-20 1.1E-24 165.0 10.9 83 3-88 4-91 (282)
24 3smz_A Protein raver-1, ribonu 99.8 8.7E-20 3E-24 162.5 13.3 147 7-165 94-242 (284)
25 2g4b_A Splicing factor U2AF 65 99.8 1E-20 3.5E-25 155.6 6.3 117 6-135 2-129 (172)
26 2lxi_A RNA-binding protein 10; 99.8 1.3E-20 4.3E-25 138.1 4.9 82 8-89 1-85 (91)
27 2wh5_A Acyl-COA-binding domain 99.8 9.3E-21 3.2E-25 139.4 3.3 87 94-180 8-98 (106)
28 3s8s_A Histone-lysine N-methyl 99.8 1.4E-19 5E-24 137.1 10.0 85 5-89 3-88 (110)
29 3fp5_A Acyl-COA binding protei 99.8 1.6E-20 5.3E-25 138.0 4.2 82 95-176 5-90 (106)
30 3flv_A Acyl-COA-binding domain 99.8 1.4E-20 4.8E-25 140.2 3.8 90 91-180 21-114 (119)
31 2ghp_A U4/U6 snRNA-associated 99.8 7.6E-20 2.6E-24 163.5 8.8 138 5-166 38-176 (292)
32 2lkz_A RNA-binding protein 5; 99.8 3.9E-20 1.3E-24 136.2 5.6 83 4-86 5-94 (95)
33 3s7r_A Heterogeneous nuclear r 99.8 2.6E-19 8.9E-24 130.1 9.7 82 3-84 6-87 (87)
34 3sde_A Paraspeckle component 1 99.8 2.3E-20 8E-25 164.1 4.8 135 5-166 19-154 (261)
35 2jab_A H10-2-G3; HER2, darpin, 99.8 3.1E-19 1.1E-23 140.8 10.7 98 247-346 39-136 (136)
36 1d9s_A Cyclin-dependent kinase 99.8 6E-20 2.1E-24 145.0 6.5 99 246-347 36-135 (136)
37 3aaa_C Myotrophin, protein V-1 99.8 3.3E-19 1.1E-23 138.2 10.5 94 252-347 4-97 (123)
38 2adc_A Polypyrimidine tract-bi 99.8 2.1E-19 7.3E-24 154.9 10.1 124 5-133 31-185 (229)
39 2yh0_A Splicing factor U2AF 65 99.8 5.5E-20 1.9E-24 154.8 5.7 125 6-136 2-150 (198)
40 2dgs_A DAZ-associated protein 99.8 5.1E-19 1.7E-23 131.8 10.3 87 3-89 5-91 (99)
41 3c5r_A BARD-1, BRCA1-associate 99.8 4.9E-19 1.7E-23 139.8 10.7 96 250-347 5-100 (137)
42 2l6b_A NR1C; ankyrin, consensu 99.8 2.2E-19 7.4E-24 137.4 8.2 95 251-347 5-99 (115)
43 1d9s_A Cyclin-dependent kinase 99.8 3.5E-19 1.2E-23 140.6 8.1 98 247-347 4-102 (136)
44 2jrs_A RNA-binding protein 39; 99.8 1.3E-18 4.5E-23 131.6 10.8 86 3-88 21-107 (108)
45 1s79_A Lupus LA protein; RRM, 99.8 5.7E-19 2E-23 132.1 8.6 81 5-86 8-88 (103)
46 3f6q_A Integrin-linked protein 99.8 1.8E-18 6.1E-23 143.0 12.5 99 247-347 31-129 (179)
47 3twr_A Tankyrase-2; ankyrin re 99.8 2E-18 7E-23 140.6 12.6 92 253-346 40-131 (165)
48 3md1_A Nuclear and cytoplasmic 99.8 1.2E-18 4.2E-23 125.3 9.8 79 9-87 2-81 (83)
49 3p5t_L Cleavage and polyadenyl 99.8 3.8E-19 1.3E-23 130.0 7.1 81 9-89 2-85 (90)
50 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.8E-18 6E-23 133.9 11.2 99 247-347 27-125 (126)
51 1ihb_A P18-INK4C(INK6), cyclin 99.8 1.3E-18 4.5E-23 141.1 11.0 100 246-347 61-161 (162)
52 2ghp_A U4/U6 snRNA-associated 99.8 6.2E-19 2.1E-23 157.6 9.5 154 6-166 115-271 (292)
53 2mss_A Protein (musashi1); RNA 99.8 5.9E-19 2E-23 124.4 7.4 75 10-84 1-75 (75)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.7E-23 126.2 8.9 81 4-84 3-84 (85)
55 2rs2_A Musashi-1, RNA-binding 99.8 6.9E-19 2.3E-23 133.4 8.1 87 3-89 20-106 (109)
56 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-18 4E-23 126.6 9.0 82 6-87 4-86 (87)
57 2dh8_A DAZ-associated protein 99.8 1.2E-18 4.2E-23 131.2 9.4 86 4-89 12-97 (105)
58 1bi7_B P16INK4A, MTS1, multipl 99.8 4.5E-19 1.5E-23 143.4 7.5 98 247-347 37-135 (156)
59 1qm9_A Polypyrimidine tract-bi 99.8 3.6E-19 1.2E-23 149.9 7.1 122 8-134 3-155 (198)
60 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.7E-23 130.0 8.6 87 3-89 3-90 (99)
61 3smz_A Protein raver-1, ribonu 99.8 2.6E-19 8.9E-24 159.4 5.9 134 5-165 19-153 (284)
62 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-18 3.8E-23 133.7 8.5 106 4-127 4-110 (115)
63 1dcq_A PYK2-associated protein 99.8 1.2E-18 4.1E-23 154.6 10.1 96 250-347 164-262 (278)
64 2y1l_E Darpin-8.4; hydrolase-i 99.8 3.4E-18 1.2E-22 140.0 12.0 98 247-346 72-169 (169)
65 2div_A TRNA selenocysteine ass 99.8 2.6E-18 9.1E-23 127.9 10.3 86 3-88 4-95 (99)
66 3ucg_A Polyadenylate-binding p 99.8 2.6E-18 8.9E-23 125.3 10.0 81 7-87 5-85 (89)
67 2la6_A RNA-binding protein FUS 99.8 2.7E-18 9.3E-23 127.8 10.3 82 3-84 8-98 (99)
68 2dnz_A Probable RNA-binding pr 99.8 2.8E-18 9.6E-23 126.7 10.3 85 5-89 2-87 (95)
69 1x4h_A RNA-binding protein 28; 99.8 1.9E-18 6.5E-23 131.5 9.6 87 3-89 10-103 (111)
70 2cqc_A Arginine/serine-rich sp 99.8 2.5E-18 8.4E-23 127.0 9.5 84 3-86 10-94 (95)
71 1awc_B Protein (GA binding pro 99.8 3E-18 1E-22 137.9 10.9 94 247-342 59-152 (153)
72 1p27_B RNA-binding protein 8A; 99.8 3.1E-18 1E-22 129.2 10.2 83 6-88 21-104 (106)
73 3ns6_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 132.5 5.0 84 6-89 4-95 (100)
74 1x5u_A Splicing factor 3B subu 99.8 2.6E-18 8.7E-23 129.4 9.4 86 4-89 11-97 (105)
75 2dnm_A SRP46 splicing factor; 99.8 1.7E-18 5.8E-23 129.9 8.4 87 3-89 8-95 (103)
76 2x1f_A MRNA 3'-END-processing 99.8 2.8E-18 9.6E-23 127.0 9.4 82 8-89 2-84 (96)
77 2dhg_A TRNA selenocysteine ass 99.8 6E-18 2.1E-22 127.1 11.4 86 3-89 4-92 (104)
78 3v30_A DNA-binding protein rfx 99.8 4.4E-18 1.5E-22 139.6 11.5 100 246-347 60-159 (172)
79 2jab_A H10-2-G3; HER2, darpin, 99.8 1.8E-18 6E-23 136.5 8.8 94 252-347 11-104 (136)
80 2dng_A Eukaryotic translation 99.8 4.2E-18 1.4E-22 127.8 10.3 84 5-89 12-95 (103)
81 3v31_A Ankyrin repeat family A 99.8 5.9E-18 2E-22 138.1 12.1 98 247-346 61-158 (167)
82 2do4_A Squamous cell carcinoma 99.8 4.1E-18 1.4E-22 127.1 10.1 84 5-89 14-98 (100)
83 4b93_B Ankyrin repeat domain-c 99.8 2.1E-18 7.3E-23 152.3 10.1 99 247-347 111-209 (269)
84 2cq0_A Eukaryotic translation 99.8 2.4E-18 8.3E-23 129.1 8.9 85 5-89 12-97 (103)
85 1ihb_A P18-INK4C(INK6), cyclin 99.8 2.6E-18 8.8E-23 139.4 9.7 98 247-347 30-127 (162)
86 2cpz_A CUG triplet repeat RNA- 99.8 4E-18 1.4E-22 130.6 10.3 84 6-89 23-107 (115)
87 2cqg_A TDP-43, TAR DNA-binding 99.8 5.7E-18 2E-22 127.0 10.7 85 4-89 11-95 (103)
88 2zgd_A 3 repeat synthetic anky 99.8 2.7E-18 9.1E-23 130.4 8.9 94 247-342 16-109 (110)
89 2dgo_A Cytotoxic granule-assoc 99.8 4.8E-18 1.6E-22 130.1 10.4 86 4-89 11-97 (115)
90 1x5s_A Cold-inducible RNA-bind 99.7 2.2E-18 7.4E-23 129.1 8.1 87 3-89 7-94 (102)
91 2kxn_B Transformer-2 protein h 99.7 4.4E-18 1.5E-22 132.9 9.9 85 4-88 42-127 (129)
92 2rfm_A Putative ankyrin repeat 99.7 5.9E-18 2E-22 141.4 11.4 98 247-346 93-190 (192)
93 1x5t_A Splicing factor 3B subu 99.7 2.3E-18 7.9E-23 127.5 7.9 84 6-89 3-88 (96)
94 2cpf_A RNA binding motif prote 99.7 4.8E-18 1.7E-22 126.2 9.5 84 6-89 3-90 (98)
95 1iqt_A AUF1, heterogeneous nuc 99.7 1.2E-18 4E-23 122.8 5.8 75 10-84 1-75 (75)
96 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-18 9.8E-23 128.2 8.0 83 4-88 11-93 (102)
97 1x4e_A RNA binding motif, sing 99.7 2.3E-18 8E-23 124.4 6.8 82 5-86 2-84 (85)
98 3n9u_C Cleavage and polyadenyl 99.7 4.6E-18 1.6E-22 137.0 9.3 82 7-88 54-138 (156)
99 2e5h_A Zinc finger CCHC-type a 99.7 3.7E-18 1.3E-22 125.8 7.9 81 4-84 12-93 (94)
100 1wg5_A Heterogeneous nuclear r 99.7 4.8E-18 1.6E-22 127.6 8.6 84 3-87 10-94 (104)
101 1x4b_A Heterogeneous nuclear r 99.7 2.8E-18 9.7E-23 131.6 7.5 84 6-89 25-108 (116)
102 2d9p_A Polyadenylate-binding p 99.7 9E-18 3.1E-22 125.9 10.1 84 4-89 11-95 (103)
103 2y1l_E Darpin-8.4; hydrolase-i 99.7 1.2E-17 4E-22 136.8 11.6 99 247-347 39-137 (169)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.4E-18 8.2E-23 128.4 6.8 82 5-87 16-98 (100)
105 3v30_A DNA-binding protein rfx 99.7 6.5E-18 2.2E-22 138.5 10.1 98 248-347 29-126 (172)
106 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.2E-18 7.5E-23 129.1 6.6 86 4-89 8-94 (102)
107 2dgp_A Bruno-like 4, RNA bindi 99.7 4.5E-18 1.5E-22 128.3 8.3 86 4-89 9-98 (106)
108 2ywk_A Putative RNA-binding pr 99.7 9.4E-18 3.2E-22 123.9 9.8 82 4-86 12-94 (95)
109 1p1t_A Cleavage stimulation fa 99.7 4.1E-18 1.4E-22 128.0 8.0 85 5-89 5-90 (104)
110 2dnh_A Bruno-like 5, RNA bindi 99.7 1.3E-17 4.5E-22 125.5 10.8 83 6-89 13-99 (105)
111 1sjq_A Polypyrimidine tract-bi 99.7 7E-18 2.4E-22 125.4 9.0 80 4-89 12-94 (105)
112 3twr_A Tankyrase-2; ankyrin re 99.7 3.6E-18 1.2E-22 139.1 7.9 99 246-347 66-164 (165)
113 1oo0_B CG8781-PA, drosophila Y 99.7 5.7E-18 2E-22 128.6 8.4 84 6-89 24-108 (110)
114 1bd8_A P19INK4D CDK4/6 inhibit 99.7 1.4E-17 4.6E-22 134.3 11.1 97 246-345 59-155 (156)
115 2fy1_A RNA-binding motif prote 99.7 8.8E-18 3E-22 128.7 9.5 84 5-89 4-88 (116)
116 1oy3_D Transcription factor in 99.7 1.2E-17 4.1E-22 147.6 11.8 100 246-347 149-249 (282)
117 2cqd_A RNA-binding region cont 99.7 1E-17 3.6E-22 128.5 9.8 84 4-88 13-97 (116)
118 1ycs_B 53BP2, P53BP2; ankyrin 99.7 6.6E-18 2.3E-22 146.4 9.7 93 253-347 35-127 (239)
119 2cph_A RNA binding motif prote 99.7 1.1E-17 3.7E-22 126.4 9.7 86 4-89 11-99 (107)
120 2dgv_A HnRNP M, heterogeneous 99.7 2.3E-17 7.9E-22 121.0 11.1 85 3-89 3-88 (92)
121 1u6f_A Tcubp1, RNA-binding pro 99.7 9.8E-18 3.4E-22 132.9 9.8 87 3-89 37-124 (139)
122 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.7E-18 9.3E-23 121.6 5.8 75 9-84 1-76 (77)
123 1wi8_A EIF-4B, eukaryotic tran 99.7 6.6E-18 2.3E-22 126.9 8.3 83 6-89 13-96 (104)
124 4a8x_A RNA-binding protein wit 99.7 5.5E-18 1.9E-22 123.2 7.6 82 7-88 3-86 (88)
125 1bd8_A P19INK4D CDK4/6 inhibit 99.7 1.7E-17 5.7E-22 133.8 11.1 96 247-345 28-123 (156)
126 2vge_A RELA-associated inhibit 99.7 9.2E-18 3.1E-22 144.6 10.1 99 247-347 46-147 (229)
127 2hgl_A HNRPF protein, heteroge 99.7 4E-18 1.4E-22 133.7 7.0 84 3-87 39-125 (136)
128 2ki2_A SS-DNA binding protein 99.7 2.6E-18 8.8E-23 125.6 5.3 81 8-89 1-82 (90)
129 3lvq_E ARF-GAP with SH3 domain 99.7 9.8E-18 3.3E-22 160.9 10.8 94 252-347 168-264 (497)
130 2cpy_A RNA-binding protein 12; 99.7 2.8E-18 9.7E-23 131.2 5.6 84 4-88 11-95 (114)
131 2cpe_A RNA-binding protein EWS 99.7 1E-17 3.4E-22 127.9 8.7 86 4-89 11-105 (113)
132 3deo_A Signal recognition part 99.7 6.7E-18 2.3E-22 140.2 8.1 95 250-347 39-134 (183)
133 2ek1_A RNA-binding protein 12; 99.7 5.8E-18 2E-22 125.0 6.8 82 5-86 12-94 (95)
134 2dgw_A Probable RNA-binding pr 99.7 1.4E-17 5E-22 121.8 8.9 84 3-88 5-88 (91)
135 2khc_A Testis-specific RNP-typ 99.7 9.2E-18 3.2E-22 129.2 8.1 80 5-84 37-117 (118)
136 2cq4_A RNA binding motif prote 99.7 1.7E-18 6E-23 132.4 3.9 83 6-88 23-105 (114)
137 3ehr_A Osteoclast-stimulating 99.7 8.4E-18 2.9E-22 143.9 8.6 95 251-347 69-164 (222)
138 3ulh_A THO complex subunit 4; 99.7 1.7E-17 5.9E-22 125.3 9.3 81 4-85 25-106 (107)
139 2m2b_A RNA-binding protein 10; 99.7 4E-18 1.4E-22 133.7 5.9 83 6-89 21-110 (131)
140 2jwn_A Embryonic polyadenylate 99.7 1.8E-17 6.2E-22 128.7 9.4 82 7-88 35-116 (124)
141 1awc_B Protein (GA binding pro 99.7 2.7E-17 9.2E-22 132.3 10.7 94 252-347 31-124 (153)
142 2rfm_A Putative ankyrin repeat 99.7 1.9E-17 6.6E-22 138.3 10.2 99 247-347 60-158 (192)
143 2hvz_A Splicing factor, argini 99.7 7.8E-18 2.7E-22 125.8 7.0 96 9-109 1-100 (101)
144 2lmi_A GRSF-1, G-rich sequence 99.7 5.8E-18 2E-22 127.9 6.2 85 2-87 5-92 (107)
145 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-17 3.9E-22 123.7 7.6 84 3-89 4-92 (96)
146 2db1_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 129.3 7.1 83 4-87 13-98 (118)
147 1n0r_A 4ANK, 4 ankyrin repeats 99.7 2.8E-17 9.6E-22 127.0 10.2 92 254-347 1-92 (126)
148 2xs2_A Deleted in azoospermia- 99.7 6.3E-18 2.1E-22 126.6 6.2 85 3-89 4-88 (102)
149 2hgm_A HNRPF protein, heteroge 99.7 1.1E-17 3.6E-22 129.3 7.6 82 3-86 37-120 (126)
150 2cq3_A RNA-binding protein 9; 99.7 3.4E-17 1.2E-21 122.8 10.2 85 3-89 10-95 (103)
151 2dis_A Unnamed protein product 99.7 1.9E-17 6.7E-22 125.4 8.9 85 5-89 5-94 (109)
152 2cqp_A RNA-binding protein 12; 99.7 9.6E-18 3.3E-22 124.6 7.0 83 5-87 12-95 (98)
153 3ui2_A Signal recognition part 99.7 1.1E-17 3.7E-22 145.6 8.4 96 249-347 39-135 (244)
154 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.6E-17 8.9E-22 123.4 9.3 84 4-89 11-95 (103)
155 2krb_A Eukaryotic translation 99.7 2.6E-17 8.7E-22 117.7 8.6 72 9-82 2-81 (81)
156 1bi7_B P16INK4A, MTS1, multipl 99.7 7.4E-18 2.5E-22 136.1 6.3 95 250-347 7-102 (156)
157 4b93_B Ankyrin repeat domain-c 99.7 3.2E-17 1.1E-21 144.7 10.6 102 244-347 75-176 (269)
158 4hbd_A KN motif and ankyrin re 99.7 3.9E-17 1.3E-21 144.7 11.1 99 247-346 175-273 (276)
159 3v31_A Ankyrin repeat family A 99.7 1.8E-17 6.2E-22 135.2 8.3 99 247-347 28-126 (167)
160 2lea_A Serine/arginine-rich sp 99.7 1.4E-17 4.9E-22 131.0 7.3 86 4-89 43-129 (135)
161 2f8y_A Notch homolog 1, transl 99.7 6.1E-17 2.1E-21 138.2 11.8 100 246-347 116-215 (223)
162 2b0o_E UPLC1; arfgap, structur 99.7 2E-17 6.8E-22 148.4 8.9 95 251-347 186-283 (301)
163 1yyh_A HN1;, notch 1, ankyrin 99.7 3.4E-17 1.1E-21 143.0 10.0 98 246-345 148-245 (253)
164 3ex7_B RNA-binding protein 8A; 99.7 2.6E-17 9E-22 128.1 8.3 85 5-89 19-104 (126)
165 1wel_A RNA-binding protein 12; 99.7 9.7E-18 3.3E-22 130.2 5.8 84 5-88 22-105 (124)
166 2do0_A HnRNP M, heterogeneous 99.7 7.1E-17 2.4E-21 123.4 10.4 83 4-87 11-94 (114)
167 2dzn_A Probable 26S proteasome 99.7 7.9E-17 2.7E-21 137.9 11.9 99 247-347 99-199 (228)
168 2vge_A RELA-associated inhibit 99.7 9.6E-18 3.3E-22 144.5 6.1 96 250-347 16-111 (229)
169 3f6q_A Integrin-linked protein 99.7 1.6E-17 5.5E-22 137.2 7.1 100 246-347 63-162 (179)
170 2err_A Ataxin-2-binding protei 99.7 3E-17 1E-21 124.3 7.6 82 4-87 25-107 (109)
171 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.4E-17 2.5E-21 130.4 10.4 85 5-89 36-121 (156)
172 1ikn_D Protein (I-kappa-B-alph 99.7 2.6E-17 8.8E-22 142.1 8.2 97 249-347 111-208 (236)
173 1fj7_A Nucleolin RBD1, protein 99.7 4.1E-18 1.4E-22 127.4 2.7 84 5-89 14-97 (101)
174 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.9E-17 1.3E-21 129.5 8.5 81 4-84 59-140 (140)
175 3aji_A 26S proteasome non-ATPa 99.7 9.8E-17 3.4E-21 137.7 11.7 98 248-347 99-196 (231)
176 2dnn_A RNA-binding protein 12; 99.7 1.3E-17 4.4E-22 125.8 5.4 77 8-86 16-92 (109)
177 3hra_A Ankyrin repeat family p 99.7 1.1E-16 3.6E-21 134.4 11.4 99 247-346 98-201 (201)
178 2f8y_A Notch homolog 1, transl 99.7 1.1E-16 3.6E-21 136.7 11.5 99 247-347 84-182 (223)
179 2kt5_A RNA and export factor-b 99.7 4.1E-17 1.4E-21 126.7 8.1 84 4-88 31-115 (124)
180 3utm_A Tankyrase-1; tankyrase, 99.7 1.3E-16 4.3E-21 145.3 12.7 99 247-347 50-148 (351)
181 2nlw_A Eukaryotic translation 99.7 4.1E-17 1.4E-21 122.7 7.6 80 7-88 14-101 (105)
182 2dha_A FLJ20171 protein; RRM d 99.7 2.5E-17 8.5E-22 126.9 6.5 80 6-86 21-104 (123)
183 2wbr_A GW182, gawky, LD47780P; 99.7 3.9E-17 1.3E-21 115.8 6.9 73 7-85 6-79 (89)
184 1x5o_A RNA binding motif, sing 99.7 1E-16 3.5E-21 122.4 9.9 81 5-86 22-111 (114)
185 1oy3_D Transcription factor in 99.7 5E-17 1.7E-21 143.6 9.3 97 249-347 3-102 (282)
186 3ehr_A Osteoclast-stimulating 99.7 1.7E-17 5.8E-22 142.0 5.9 100 247-347 98-197 (222)
187 2rfa_A Transient receptor pote 99.7 1.5E-16 5.2E-21 136.7 11.9 97 249-347 69-182 (232)
188 1ikn_D Protein (I-kappa-B-alph 99.7 1.5E-16 5E-21 137.3 11.8 100 246-347 69-175 (236)
189 2cpi_A CCR4-NOT transcription 99.7 3E-17 1E-21 124.8 6.6 83 6-88 13-102 (111)
190 3ljn_A Hypothetical protein; a 99.7 6.2E-17 2.1E-21 148.8 10.0 100 246-347 164-268 (364)
191 2kn4_A Immunoglobulin G-bindin 99.7 4.3E-17 1.5E-21 132.1 7.8 84 6-89 68-152 (158)
192 1ycs_B 53BP2, P53BP2; ankyrin 99.7 1.7E-17 5.7E-22 143.8 5.7 99 247-347 62-163 (239)
193 2hgn_A Heterogeneous nuclear r 99.7 2.1E-17 7.3E-22 130.0 5.6 82 5-88 43-124 (139)
194 3t8k_A Uncharacterized protein 99.7 8.6E-18 2.9E-22 140.0 3.5 101 244-345 64-176 (186)
195 2a3j_A U1 small nuclear ribonu 99.7 8.1E-17 2.8E-21 124.8 8.7 82 5-89 26-112 (127)
196 1k1a_A B-cell lymphoma 3-encod 99.7 1.6E-16 5.4E-21 137.1 11.5 99 247-347 108-207 (241)
197 4g8k_A 2-5A-dependent ribonucl 99.7 1.1E-16 3.7E-21 145.7 10.9 96 246-347 230-325 (337)
198 1x4a_A Splicing factor, argini 99.7 1.8E-16 6.2E-21 120.1 10.3 83 4-89 18-101 (109)
199 3kea_A K1L; tropism, ANK repea 99.7 7.3E-17 2.5E-21 143.6 9.4 92 254-347 61-153 (285)
200 3jxi_A Vanilloid receptor-rela 99.7 7.6E-17 2.6E-21 141.1 9.3 97 250-347 88-209 (260)
201 2etb_A Transient receptor pote 99.7 4E-17 1.4E-21 142.6 7.5 94 253-347 134-245 (256)
202 3q2s_C Cleavage and polyadenyl 99.7 8.8E-17 3E-21 138.0 9.4 82 7-88 67-151 (229)
203 2dnq_A RNA-binding protein 4B; 99.7 1.7E-16 5.8E-21 115.8 9.6 80 2-89 2-82 (90)
204 2etb_A Transient receptor pote 99.7 1.1E-16 3.7E-21 139.8 10.1 96 251-347 86-205 (256)
205 2xai_A ASB-9, ankyrin repeat a 99.7 1.1E-16 3.8E-21 140.4 10.2 99 246-347 27-125 (261)
206 3jue_A Arfgap with coiled-coil 99.7 1.1E-16 3.7E-21 147.2 10.4 99 246-346 224-324 (368)
207 2rfa_A Transient receptor pote 99.7 1.8E-16 6.3E-21 136.1 11.2 99 247-347 29-145 (232)
208 3d9h_A CDNA FLJ77766, highly s 99.7 2.1E-16 7.1E-21 140.6 11.8 97 249-347 53-149 (285)
209 2e5g_A U6 snRNA-specific termi 99.7 3.3E-16 1.1E-20 115.3 10.9 81 3-88 3-83 (94)
210 3b7b_A Euchromatic histone-lys 99.7 2.7E-16 9.3E-21 135.4 12.1 99 247-347 103-201 (237)
211 2pnn_A Transient receptor pote 99.7 5.1E-17 1.8E-21 143.4 7.7 96 251-347 144-257 (273)
212 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.6E-21 130.1 9.6 83 7-89 71-154 (165)
213 1wdy_A 2-5A-dependent ribonucl 99.7 2.3E-16 8E-21 139.2 11.8 101 246-347 173-277 (285)
214 2ad9_A Polypyrimidine tract-bi 99.7 1E-16 3.4E-21 122.2 8.1 79 5-89 28-109 (119)
215 3jxi_A Vanilloid receptor-rela 99.7 4.8E-17 1.7E-21 142.4 7.2 95 252-347 137-249 (260)
216 3c5r_A BARD-1, BRCA1-associate 99.7 1.2E-17 4.1E-22 131.8 2.9 98 247-346 35-132 (137)
217 3hra_A Ankyrin repeat family p 99.7 2.5E-16 8.7E-21 132.1 11.0 101 246-347 63-169 (201)
218 3r27_A HnRNP L, heterogeneous 99.7 1.2E-16 4E-21 117.6 7.6 77 5-87 18-97 (100)
219 2cq1_A PTB-like protein L; RRM 99.7 1.4E-16 4.7E-21 118.4 8.1 79 5-89 12-93 (101)
220 2fo1_E LIN-12 protein; beta-ba 99.7 2.5E-16 8.6E-21 145.5 11.7 96 251-347 275-370 (373)
221 3aaa_C Myotrophin, protein V-1 99.7 2.7E-16 9.2E-21 121.6 9.9 85 247-333 32-116 (123)
222 2pnn_A Transient receptor pote 99.7 1.8E-16 6.3E-21 139.8 10.0 96 251-347 97-217 (273)
223 2la4_A Nuclear and cytoplasmic 99.7 2.2E-16 7.4E-21 117.9 8.7 77 4-86 23-100 (101)
224 3deo_A Signal recognition part 99.7 2.2E-16 7.5E-21 131.0 9.5 97 247-345 68-181 (183)
225 2jvr_A Nucleolar protein 3; RN 99.7 6.5E-17 2.2E-21 122.2 5.7 82 2-87 22-105 (111)
226 3ui2_A Signal recognition part 99.7 1.4E-16 4.8E-21 138.5 8.7 97 247-345 69-182 (244)
227 1s70_B 130 kDa myosin-binding 99.7 1.7E-16 5.7E-21 141.7 9.0 94 252-347 37-130 (299)
228 4g8k_A 2-5A-dependent ribonucl 99.7 4.3E-16 1.5E-20 141.7 11.9 101 246-347 193-297 (337)
229 1yyh_A HN1;, notch 1, ankyrin 99.7 3.3E-16 1.1E-20 136.7 10.5 99 247-347 116-214 (253)
230 3aji_A 26S proteasome non-ATPa 99.7 5.2E-16 1.8E-20 133.1 11.5 99 247-347 65-163 (231)
231 2fc8_A NCL protein; structure 99.7 3E-16 1E-20 117.4 8.6 83 4-89 11-94 (102)
232 2fc9_A NCL protein; structure 99.7 1.5E-16 5E-21 118.8 6.9 82 4-89 11-93 (101)
233 1x4d_A Matrin 3; structural ge 99.7 7.1E-17 2.4E-21 119.9 4.9 79 5-89 12-94 (102)
234 1n11_A Ankyrin; clathrin, BAND 99.7 2.7E-16 9.2E-21 148.1 10.0 99 247-347 270-368 (437)
235 2lcw_A RNA-binding protein FUS 99.5 9.3E-18 3.2E-22 128.7 0.0 86 4-89 3-97 (116)
236 1wex_A Hypothetical protein (r 99.6 4.6E-16 1.6E-20 116.3 9.1 78 5-88 12-92 (104)
237 3utm_A Tankyrase-1; tankyrase, 99.6 6E-16 2E-20 140.8 11.9 95 251-347 207-304 (351)
238 1s70_B 130 kDa myosin-binding 99.6 4.7E-16 1.6E-20 138.7 10.9 99 247-347 98-256 (299)
239 3ljn_A Hypothetical protein; a 99.6 2.5E-16 8.6E-21 144.8 9.4 98 248-347 131-235 (364)
240 1nu4_A U1A RNA binding domain; 99.6 1.1E-16 3.9E-21 118.5 5.6 83 4-89 4-91 (97)
241 1why_A Hypothetical protein ri 99.6 4.5E-16 1.5E-20 115.3 8.8 79 5-89 14-95 (97)
242 2e5j_A Methenyltetrahydrofolat 99.6 4E-16 1.4E-20 115.5 8.3 79 5-88 16-95 (97)
243 2ytc_A PRE-mRNA-splicing facto 99.6 6.2E-16 2.1E-20 111.5 9.1 76 3-84 7-84 (85)
244 2j8a_A Histone-lysine N-methyl 99.6 1.9E-16 6.6E-21 119.8 6.5 78 9-86 3-95 (136)
245 4hbd_A KN motif and ankyrin re 99.6 3.6E-16 1.2E-20 138.5 9.4 99 247-347 137-241 (276)
246 2cpx_A Hypothetical protein FL 99.6 8.1E-17 2.8E-21 123.2 4.5 84 6-89 23-107 (115)
247 1x4f_A Matrin 3; structural ge 99.6 2.1E-16 7.3E-21 119.0 6.6 80 4-89 21-104 (112)
248 2dzn_A Probable 26S proteasome 99.6 9E-16 3.1E-20 131.3 11.5 94 251-346 68-163 (228)
249 3t8k_A Uncharacterized protein 99.6 9.5E-17 3.3E-21 133.7 5.2 93 253-347 36-145 (186)
250 2xnq_A Nuclear polyadenylated 99.6 7.3E-16 2.5E-20 114.0 9.2 76 4-87 18-95 (97)
251 3kea_A K1L; tropism, ANK repea 99.6 4.1E-16 1.4E-20 138.7 9.3 99 246-347 86-185 (285)
252 3d2w_A TAR DNA-binding protein 99.6 2.9E-16 1E-20 114.2 6.6 80 3-88 6-85 (89)
253 1n11_A Ankyrin; clathrin, BAND 99.6 4.4E-16 1.5E-20 146.7 9.6 99 247-347 39-137 (437)
254 1x4g_A Nucleolysin TIAR; struc 99.6 6.4E-16 2.2E-20 117.0 8.7 80 4-89 21-101 (109)
255 2cpj_A Non-POU domain-containi 99.6 4.7E-16 1.6E-20 115.6 7.8 79 5-89 12-91 (99)
256 1x4c_A Splicing factor, argini 99.6 5.5E-16 1.9E-20 117.1 8.2 78 5-89 12-95 (108)
257 2xai_A ASB-9, ankyrin repeat a 99.6 1.2E-15 4.1E-20 133.8 11.5 99 246-347 60-158 (261)
258 2jvo_A Nucleolar protein 3; nu 99.6 6.5E-16 2.2E-20 116.7 8.4 78 4-89 27-105 (108)
259 1wdy_A 2-5A-dependent ribonucl 99.6 1.8E-15 6.2E-20 133.4 12.3 94 252-347 36-129 (285)
260 3b7b_A Euchromatic histone-lys 99.6 1.5E-15 5.3E-20 130.7 11.5 99 247-347 36-135 (237)
261 2dnl_A Cytoplasmic polyadenyla 99.6 4E-16 1.4E-20 119.1 6.5 82 3-86 3-87 (114)
262 2dnp_A RNA-binding protein 14; 99.6 9.4E-16 3.2E-20 111.8 8.2 79 3-89 4-83 (90)
263 2f3j_A RNA and export factor b 99.6 6.6E-16 2.3E-20 127.1 8.2 83 5-88 85-168 (177)
264 1fjc_A Nucleolin RBD2, protein 99.6 2.3E-16 7.8E-21 116.6 4.9 80 5-89 13-93 (96)
265 2i2y_A Fusion protein consists 99.6 7.7E-16 2.6E-20 123.6 8.3 79 5-88 70-149 (150)
266 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.6E-20 127.5 10.1 84 7-90 103-186 (196)
267 2cqh_A IGF-II mRNA-binding pro 99.6 4E-16 1.4E-20 114.6 5.9 81 2-89 2-85 (93)
268 2dgt_A RNA-binding protein 30; 99.6 9.6E-16 3.3E-20 112.3 7.8 79 3-89 5-84 (92)
269 2dgu_A Heterogeneous nuclear r 99.6 9.8E-16 3.3E-20 114.7 7.8 78 4-89 7-85 (103)
270 2kvi_A Nuclear polyadenylated 99.6 8.7E-16 3E-20 113.5 7.4 78 4-89 6-85 (96)
271 1k1a_A B-cell lymphoma 3-encod 99.6 3.2E-15 1.1E-19 128.9 12.0 100 246-347 70-174 (241)
272 2cjk_A Nuclear polyadenylated 99.6 4.9E-16 1.7E-20 126.8 6.2 81 7-87 86-166 (167)
273 3d9h_A CDNA FLJ77766, highly s 99.6 2.2E-15 7.6E-20 133.9 10.9 98 247-347 117-214 (285)
274 2fo1_E LIN-12 protein; beta-ba 99.6 2.3E-15 7.9E-20 139.0 11.0 100 247-347 227-337 (373)
275 3md3_A Nuclear and cytoplasmic 99.6 2.8E-15 9.5E-20 122.0 10.1 81 5-85 84-165 (166)
276 3jue_A Arfgap with coiled-coil 99.6 2.4E-15 8.3E-20 138.2 10.5 92 254-347 198-292 (368)
277 3egn_A RNA-binding protein 40; 99.6 2.9E-16 9.8E-21 125.0 3.7 85 5-89 42-132 (143)
278 2hzc_A Splicing factor U2AF 65 99.6 2E-15 6.9E-20 109.3 7.9 73 5-83 3-86 (87)
279 2e44_A Insulin-like growth fac 99.6 1.5E-15 5.1E-20 112.2 7.3 79 5-87 12-92 (96)
280 1whx_A Hypothetical protein ri 99.6 7.6E-16 2.6E-20 116.9 5.8 75 6-86 8-83 (111)
281 2cpd_A Apobec-1 stimulating pr 99.6 3.9E-15 1.3E-19 110.6 9.2 77 5-89 12-91 (99)
282 2voo_A Lupus LA protein; RNA-b 99.6 3.8E-15 1.3E-19 124.4 10.0 80 8-88 109-188 (193)
283 2g4b_A Splicing factor U2AF 65 99.6 3.3E-15 1.1E-19 122.4 9.5 80 6-85 92-172 (172)
284 2diu_A KIAA0430 protein; struc 99.6 4.1E-15 1.4E-19 106.4 8.6 76 4-89 4-86 (96)
285 1wf0_A TDP-43, TAR DNA-binding 99.6 7.7E-16 2.6E-20 111.8 4.9 79 5-89 2-80 (88)
286 3eu9_A Huntingtin-interacting 99.6 3.2E-15 1.1E-19 128.5 9.5 99 247-347 134-234 (240)
287 1sw6_A Regulatory protein SWI6 99.6 1.1E-15 3.7E-20 138.7 6.7 101 246-347 155-307 (327)
288 1wf1_A RNA-binding protein RAL 99.6 3.2E-15 1.1E-19 113.3 7.9 74 7-88 26-101 (110)
289 1sw6_A Regulatory protein SWI6 99.6 1.4E-15 4.7E-20 138.0 6.7 100 246-346 121-228 (327)
290 2yh0_A Splicing factor U2AF 65 99.6 5.4E-15 1.9E-19 124.0 9.8 84 6-89 112-196 (198)
291 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.5E-20 109.7 6.0 75 6-87 3-78 (88)
292 2qfj_A FBP-interacting repress 99.6 8.1E-15 2.8E-19 124.7 10.8 83 6-88 123-206 (216)
293 4f02_A Polyadenylate-binding p 99.6 5.5E-15 1.9E-19 125.7 8.9 81 7-89 102-183 (213)
294 1dcq_A PYK2-associated protein 99.6 1.2E-14 4E-19 128.8 11.1 88 257-347 133-229 (278)
295 3eu9_A Huntingtin-interacting 99.6 1.6E-14 5.4E-19 124.1 11.7 98 248-347 35-133 (240)
296 1sjr_A Polypyrimidine tract-bi 99.6 7.5E-15 2.6E-19 117.5 8.8 81 4-88 42-125 (164)
297 3lvq_E ARF-GAP with SH3 domain 99.6 6.6E-15 2.3E-19 141.2 9.6 88 257-347 135-231 (497)
298 3pgw_S U1-70K; protein-RNA com 99.6 5.9E-15 2E-19 138.2 9.0 82 7-88 101-183 (437)
299 2b0o_E UPLC1; arfgap, structur 99.6 1.4E-14 4.7E-19 129.8 10.7 88 257-347 154-250 (301)
300 3zzy_A Polypyrimidine tract-bi 99.6 1.1E-14 3.8E-19 112.3 8.5 80 4-88 24-107 (130)
301 1x5p_A Negative elongation fac 99.5 1.3E-14 4.5E-19 107.3 8.5 78 4-89 11-89 (97)
302 1b7f_A Protein (SXL-lethal pro 99.5 2.4E-14 8.1E-19 116.7 10.6 79 6-84 87-168 (168)
303 1n0q_A 3ANK, 3 ankyrin repeats 99.5 9.8E-15 3.3E-19 106.9 7.4 59 288-347 1-59 (93)
304 2cq2_A Hypothetical protein LO 99.5 4.3E-15 1.5E-19 111.9 5.3 77 4-86 21-105 (114)
305 3beg_B Splicing factor, argini 99.5 7.5E-15 2.6E-19 112.1 6.6 70 6-82 14-84 (115)
306 1fxl_A Paraneoplastic encephal 99.5 3.5E-14 1.2E-18 115.5 10.7 79 5-83 85-166 (167)
307 3sde_A Paraspeckle component 1 99.5 2.9E-14 1E-18 125.1 10.1 134 7-161 95-233 (261)
308 3nmr_A Cugbp ELAV-like family 99.5 5.3E-14 1.8E-18 115.4 10.3 79 6-85 93-175 (175)
309 2e5i_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 108.0 9.4 77 6-88 23-103 (124)
310 2pe8_A Splicing factor 45; RRM 99.5 5.7E-14 2E-18 105.0 9.3 82 5-86 5-93 (105)
311 2bz2_A Negative elongation fac 99.5 5.4E-14 1.9E-18 108.2 7.9 77 5-89 36-113 (121)
312 1fje_B Nucleolin RBD12, protei 99.5 7.2E-14 2.5E-18 114.8 6.6 77 6-87 97-174 (175)
313 2aja_A Ankyrin repeat family p 99.5 5.9E-15 2E-19 136.0 0.1 93 252-347 125-223 (376)
314 2zgd_A 3 repeat synthetic anky 99.4 1.4E-13 4.9E-18 104.0 7.3 67 280-347 15-81 (110)
315 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-13 4.1E-18 117.9 7.4 79 5-89 131-231 (240)
316 2dit_A HIV TAT specific factor 99.4 1.5E-12 5E-17 98.8 8.5 83 3-89 10-104 (112)
317 2aja_A Ankyrin repeat family p 99.4 2E-13 6.9E-18 125.8 3.7 91 254-347 91-187 (376)
318 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.7E-18 101.4 3.1 71 13-84 20-103 (104)
319 2l6b_A NR1C; ankyrin, consensu 99.3 8.1E-13 2.8E-17 100.4 5.8 79 247-327 34-112 (115)
320 3tyt_A Heterogeneous nuclear r 99.3 9E-13 3.1E-17 111.1 6.4 69 8-78 123-194 (205)
321 3pgw_A U1-A; protein-RNA compl 99.3 2.6E-12 8.8E-17 113.9 8.8 75 6-85 205-281 (282)
322 2d9o_A DNAJ (HSP40) homolog, s 99.3 2E-11 6.8E-16 90.0 10.9 76 8-89 10-92 (100)
323 1qm9_A Polypyrimidine tract-bi 99.3 3.2E-12 1.1E-16 107.1 7.6 75 7-86 119-196 (198)
324 3v4m_A Splicing factor U2AF 65 99.3 2.9E-12 9.9E-17 95.8 5.9 80 7-86 4-96 (105)
325 2adc_A Polypyrimidine tract-bi 99.3 6.6E-12 2.2E-16 107.8 8.9 75 7-86 150-227 (229)
326 3ue2_A Poly(U)-binding-splicin 99.3 8.9E-12 3.1E-16 94.9 7.6 81 6-86 18-108 (118)
327 3tht_A Alkylated DNA repair pr 99.2 3.6E-11 1.2E-15 108.2 7.5 76 4-85 14-97 (345)
328 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.7E-14 77.6 6.5 72 7-86 6-85 (91)
329 3s6e_A RNA-binding protein 39; 99.0 9E-10 3.1E-14 83.2 6.6 78 5-86 4-92 (114)
330 2kn4_A Immunoglobulin G-bindin 98.9 1.9E-10 6.5E-15 92.7 1.3 119 37-165 2-128 (158)
331 1owx_A Lupus LA protein, SS-B, 98.9 3.4E-09 1.2E-13 80.1 6.9 74 6-85 16-94 (121)
332 1ufw_A Synaptojanin 2; RNP dom 98.8 5.1E-09 1.7E-13 74.5 5.0 72 7-86 14-94 (95)
333 2i2y_A Fusion protein consists 98.6 8.4E-09 2.9E-13 82.2 1.0 88 47-135 10-108 (150)
334 3dxb_A Thioredoxin N-terminall 98.6 9.7E-08 3.3E-12 81.2 7.7 67 20-86 141-212 (222)
335 2dhx_A Poly (ADP-ribose) polym 98.3 1.1E-05 3.8E-10 58.1 11.0 91 5-114 5-100 (104)
336 3pgw_S U1-70K; protein-RNA com 98.1 2.1E-07 7.3E-12 87.0 -2.1 59 100-165 102-160 (437)
337 2l9w_A U4/U6 snRNA-associated- 97.9 2.8E-05 9.6E-10 56.4 6.7 71 7-83 20-96 (117)
338 2lea_A Serine/arginine-rich sp 97.9 2.3E-06 7.9E-11 66.6 0.4 100 51-165 5-105 (135)
339 4fxv_A ELAV-like protein 1; RN 97.9 8.5E-07 2.9E-11 65.1 -2.1 62 97-165 16-77 (99)
340 2lxi_A RNA-binding protein 10; 97.7 3.2E-06 1.1E-10 60.9 -1.3 58 101-165 2-60 (91)
341 2lkz_A RNA-binding protein 5; 97.6 4.3E-06 1.5E-10 60.7 -2.2 61 100-165 9-69 (95)
342 3s8s_A Histone-lysine N-methyl 97.4 9.4E-06 3.2E-10 60.7 -2.0 59 100-165 6-64 (110)
343 1sjq_A Polypyrimidine tract-bi 97.4 2.1E-05 7E-10 58.0 -0.2 54 99-165 15-68 (105)
344 1uw4_A UPF3X; nonsense mediate 97.4 0.00078 2.7E-08 47.8 7.6 69 9-77 2-73 (91)
345 2hgn_A Heterogeneous nuclear r 97.4 1.4E-05 4.7E-10 62.4 -1.6 102 51-166 2-103 (139)
346 2mss_A Protein (musashi1); RNA 97.3 2.6E-05 9E-10 53.6 -0.6 57 102-165 1-57 (75)
347 1iqt_A AUF1, heterogeneous nuc 97.3 2E-05 6.7E-10 54.2 -1.5 57 102-165 1-57 (75)
348 1wwh_A Nucleoporin 35, nucleop 97.3 0.00089 3.1E-08 49.8 7.4 74 5-85 21-95 (119)
349 3p5t_L Cleavage and polyadenyl 97.3 1.7E-05 5.8E-10 56.8 -1.9 58 101-165 2-61 (90)
350 1rk8_A CG8781-PA, CG8781-PA pr 97.3 1.7E-05 5.9E-10 63.8 -2.0 60 99-165 71-130 (165)
351 3mdf_A Peptidyl-prolyl CIS-tra 97.2 2.4E-05 8.3E-10 55.2 -1.4 60 99-165 6-65 (85)
352 2ad9_A Polypyrimidine tract-bi 97.2 5.2E-05 1.8E-09 57.2 0.4 54 99-165 30-83 (119)
353 3ns6_A Eukaryotic translation 97.2 1.9E-05 6.3E-10 57.9 -2.3 59 100-165 6-70 (100)
354 1uaw_A Mouse-musashi-1; RNP-ty 97.2 3.5E-05 1.2E-09 53.2 -0.9 57 102-165 2-58 (77)
355 2cqb_A Peptidyl-prolyl CIS-tra 97.2 4.5E-05 1.5E-09 55.9 -0.4 60 99-165 11-70 (102)
356 2jrs_A RNA-binding protein 39; 97.2 3.4E-05 1.2E-09 57.3 -1.1 60 99-165 25-84 (108)
357 2dgp_A Bruno-like 4, RNA bindi 97.2 3.3E-05 1.1E-09 57.0 -1.2 60 99-165 12-71 (106)
358 4f25_A Polyadenylate-binding p 97.2 2.1E-05 7.2E-10 59.2 -2.4 57 100-165 5-61 (115)
359 3r27_A HnRNP L, heterogeneous 97.2 0.00027 9.2E-09 51.4 3.5 35 99-133 20-54 (100)
360 2x1f_A MRNA 3'-END-processing 97.2 4.2E-05 1.4E-09 55.4 -0.9 58 101-165 3-60 (96)
361 1x5s_A Cold-inducible RNA-bind 97.2 4.5E-05 1.6E-09 55.9 -0.7 60 99-165 11-70 (102)
362 2m2b_A RNA-binding protein 10; 97.1 5.3E-05 1.8E-09 58.4 -0.5 60 98-165 21-82 (131)
363 3bs9_A Nucleolysin TIA-1 isofo 97.1 3.1E-05 1.1E-09 54.9 -1.9 59 100-165 6-64 (87)
364 2rs2_A Musashi-1, RNA-binding 97.1 4.6E-05 1.6E-09 56.7 -1.1 60 99-165 24-83 (109)
365 1whw_A Hypothetical protein ri 97.1 3.9E-05 1.3E-09 55.9 -1.5 60 99-165 7-66 (99)
366 1x5t_A Splicing factor 3B subu 97.1 4.4E-05 1.5E-09 55.2 -1.4 59 100-165 5-64 (96)
367 1x4h_A RNA-binding protein 28; 97.1 5.2E-05 1.8E-09 56.4 -1.0 60 99-165 14-73 (111)
368 3s7r_A Heterogeneous nuclear r 97.1 2.2E-05 7.4E-10 55.8 -3.1 60 99-165 10-69 (87)
369 1x4e_A RNA binding motif, sing 97.1 2.9E-05 1E-09 54.8 -2.4 60 100-166 5-64 (85)
370 2cph_A RNA binding motif prote 97.1 5.8E-05 2E-09 55.8 -0.9 61 99-165 14-74 (107)
371 1whv_A Poly(A)-specific ribonu 97.1 0.0016 5.5E-08 46.3 6.5 52 10-69 17-68 (100)
372 3md1_A Nuclear and cytoplasmic 97.1 3.3E-05 1.1E-09 54.2 -2.2 58 101-165 2-59 (83)
373 2e5h_A Zinc finger CCHC-type a 97.1 5.1E-05 1.7E-09 54.7 -1.3 60 99-165 15-74 (94)
374 2cpz_A CUG triplet repeat RNA- 97.0 5.8E-05 2E-09 56.7 -1.2 60 99-165 24-83 (115)
375 2div_A TRNA selenocysteine ass 97.0 4.6E-05 1.6E-09 55.5 -1.8 60 99-165 8-68 (99)
376 2lcw_A RNA-binding protein FUS 96.1 9.8E-05 3.3E-09 55.5 0.0 60 99-165 6-73 (116)
377 1oo0_B CG8781-PA, drosophila Y 97.0 7.3E-05 2.5E-09 55.6 -0.8 60 99-165 25-84 (110)
378 2dnz_A Probable RNA-binding pr 97.0 5.6E-05 1.9E-09 54.5 -1.4 59 100-165 5-63 (95)
379 1x5u_A Splicing factor 3B subu 97.0 5.2E-05 1.8E-09 55.9 -1.7 60 99-165 14-73 (105)
380 2cq1_A PTB-like protein L; RRM 97.0 7.9E-05 2.7E-09 54.6 -0.7 35 99-133 14-48 (101)
381 2la6_A RNA-binding protein FUS 97.0 5.4E-05 1.8E-09 55.2 -1.7 60 99-165 12-79 (99)
382 1p27_B RNA-binding protein 8A; 97.0 5.5E-05 1.9E-09 55.9 -1.8 60 99-165 22-81 (106)
383 2cqc_A Arginine/serine-rich sp 97.0 5.2E-05 1.8E-09 54.7 -1.9 60 99-165 14-73 (95)
384 2dgs_A DAZ-associated protein 97.0 5.6E-05 1.9E-09 55.1 -1.8 61 99-166 9-69 (99)
385 2cpe_A RNA-binding protein EWS 97.0 8.8E-05 3E-09 55.4 -0.7 60 99-165 14-81 (113)
386 2fy1_A RNA-binding motif prote 97.0 7.9E-05 2.7E-09 56.1 -1.1 58 100-165 7-64 (116)
387 2dgx_A KIAA0430 protein; RRM d 97.0 0.00013 4.3E-09 52.9 0.1 57 99-165 8-68 (96)
388 2kxn_B Transformer-2 protein h 96.9 7.4E-05 2.5E-09 57.4 -1.3 60 99-165 45-104 (129)
389 2cqg_A TDP-43, TAR DNA-binding 96.9 4.7E-05 1.6E-09 55.9 -2.4 61 99-166 14-74 (103)
390 1x4b_A Heterogeneous nuclear r 96.9 9.2E-05 3.1E-09 55.6 -0.9 60 99-165 26-85 (116)
391 3ex7_B RNA-binding protein 8A; 96.9 9.6E-05 3.3E-09 56.4 -0.8 60 99-165 21-80 (126)
392 2do4_A Squamous cell carcinoma 96.9 6.5E-05 2.2E-09 54.8 -1.7 59 99-165 16-74 (100)
393 2dnl_A Cytoplasmic polyadenyla 96.9 9.9E-05 3.4E-09 55.3 -0.7 61 100-165 8-68 (114)
394 2cq4_A RNA binding motif prote 96.9 7.1E-05 2.4E-09 56.1 -1.6 61 99-166 24-84 (114)
395 2cqd_A RNA-binding region cont 96.9 6.7E-05 2.3E-09 56.4 -1.7 60 99-165 16-75 (116)
396 2jvr_A Nucleolar protein 3; RN 96.9 0.00057 2E-08 50.8 3.4 55 100-165 28-83 (111)
397 1s79_A Lupus LA protein; RRM, 96.9 0.00036 1.2E-08 51.2 2.2 59 99-165 10-68 (103)
398 1p1t_A Cleavage stimulation fa 96.9 6.7E-05 2.3E-09 55.1 -1.9 59 100-165 8-66 (104)
399 2dnh_A Bruno-like 5, RNA bindi 96.9 5.9E-05 2E-09 55.5 -2.3 59 99-165 14-72 (105)
400 2err_A Ataxin-2-binding protei 96.9 0.00012 4.1E-09 54.4 -0.6 59 98-165 27-85 (109)
401 3n9u_C Cleavage and polyadenyl 96.9 5.5E-05 1.9E-09 60.2 -2.7 59 100-165 55-115 (156)
402 3ucg_A Polyadenylate-binding p 96.9 4.5E-05 1.5E-09 54.3 -3.0 60 99-165 5-64 (89)
403 3d2w_A TAR DNA-binding protein 96.9 0.00052 1.8E-08 48.9 2.6 37 99-135 10-46 (89)
404 2jvo_A Nucleolar protein 3; nu 96.8 0.0002 7E-09 53.1 0.4 37 97-133 28-64 (108)
405 2ek1_A RNA-binding protein 12; 96.8 4.9E-05 1.7E-09 54.9 -3.0 59 100-165 15-73 (95)
406 2cpy_A RNA-binding protein 12; 96.8 0.0001 3.5E-09 55.2 -1.5 59 99-165 14-73 (114)
407 2dgo_A Cytotoxic granule-assoc 96.8 7E-05 2.4E-09 56.2 -2.4 60 99-165 14-73 (115)
408 2dnm_A SRP46 splicing factor; 96.8 0.00011 3.9E-09 53.8 -1.2 60 99-165 12-71 (103)
409 2dh8_A DAZ-associated protein 96.8 8.8E-05 3E-09 54.6 -1.8 60 99-165 15-74 (105)
410 1x4d_A Matrin 3; structural ge 96.8 0.00037 1.3E-08 51.0 1.5 37 99-135 14-51 (102)
411 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.8 0.00011 3.8E-09 57.1 -1.4 60 99-165 62-121 (140)
412 2j8a_A Histone-lysine N-methyl 96.8 9.9E-05 3.4E-09 55.9 -1.7 50 101-155 3-56 (136)
413 2wbr_A GW182, gawky, LD47780P; 96.8 0.00035 1.2E-08 49.3 1.2 52 101-165 8-59 (89)
414 2dha_A FLJ20171 protein; RRM d 96.8 9.7E-05 3.3E-09 56.2 -1.8 60 99-166 22-85 (123)
415 2jwn_A Embryonic polyadenylate 96.8 9.6E-05 3.3E-09 56.2 -1.9 62 98-166 34-95 (124)
416 2krb_A Eukaryotic translation 96.8 8.9E-05 3E-09 51.8 -1.9 56 101-165 2-63 (81)
417 1wg5_A Heterogeneous nuclear r 96.8 8.4E-05 2.9E-09 54.7 -2.2 60 99-166 14-74 (104)
418 2dis_A Unnamed protein product 96.8 0.00013 4.5E-09 54.0 -1.2 60 99-165 7-68 (109)
419 1wey_A Calcipressin 1; structu 96.8 0.0037 1.3E-07 45.2 6.4 73 8-86 5-83 (104)
420 1wf0_A TDP-43, TAR DNA-binding 96.7 0.00075 2.6E-08 47.7 2.8 36 100-135 5-40 (88)
421 2cq0_A Eukaryotic translation 96.7 4.6E-05 1.6E-09 56.0 -3.8 60 99-165 14-73 (103)
422 2j76_E EIF-4B, EIF4B, eukaryot 96.7 9.4E-05 3.2E-09 54.0 -2.1 61 99-166 18-78 (100)
423 1whx_A Hypothetical protein ri 96.7 0.00094 3.2E-08 49.6 3.3 35 99-133 9-43 (111)
424 2do0_A HnRNP M, heterogeneous 96.7 0.00011 3.6E-09 55.0 -2.0 59 99-165 14-72 (114)
425 3beg_B Splicing factor, argini 96.7 0.00042 1.4E-08 52.0 1.3 36 100-135 16-51 (115)
426 1wf1_A RNA-binding protein RAL 96.7 0.0013 4.3E-08 48.7 3.9 55 74-132 5-60 (110)
427 2cqp_A RNA-binding protein 12; 96.7 5.2E-05 1.8E-09 55.1 -3.7 59 100-165 15-73 (98)
428 2d9p_A Polyadenylate-binding p 96.7 7.8E-05 2.7E-09 54.7 -2.8 59 98-165 13-71 (103)
429 2lmi_A GRSF-1, G-rich sequence 96.7 0.00016 5.4E-09 53.5 -1.2 59 99-165 10-71 (107)
430 2kt5_A RNA and export factor-b 96.7 0.00015 5.1E-09 55.2 -1.3 59 99-165 34-92 (124)
431 2dgv_A HnRNP M, heterogeneous 96.7 0.00011 3.7E-09 52.6 -2.1 58 99-165 7-64 (92)
432 1why_A Hypothetical protein ri 96.7 0.0026 9E-08 45.7 5.4 36 100-135 17-52 (97)
433 2dnn_A RNA-binding protein 12; 96.7 0.00014 4.9E-09 54.0 -1.6 58 100-166 16-73 (109)
434 1x4f_A Matrin 3; structural ge 96.7 0.0011 3.8E-08 49.3 3.3 35 99-133 24-59 (112)
435 2dgt_A RNA-binding protein 30; 96.7 0.0007 2.4E-08 48.3 2.1 35 99-133 9-43 (92)
436 1wi8_A EIF-4B, eukaryotic tran 96.7 0.00011 3.8E-09 54.0 -2.3 61 99-166 14-74 (104)
437 2la4_A Nuclear and cytoplasmic 96.6 0.00031 1.1E-08 51.2 0.2 34 100-133 27-60 (101)
438 2ki2_A SS-DNA binding protein 96.6 5E-05 1.7E-09 54.2 -4.2 36 101-136 2-37 (90)
439 2khc_A Testis-specific RNP-typ 96.6 6.5E-05 2.2E-09 56.7 -3.8 38 99-136 39-76 (118)
440 1nu4_A U1A RNA binding domain; 96.6 0.00047 1.6E-08 49.7 1.0 57 99-165 7-67 (97)
441 1x4c_A Splicing factor, argini 96.6 0.00046 1.6E-08 51.0 0.9 37 99-135 14-50 (108)
442 2hgl_A HNRPF protein, heteroge 96.6 0.00011 3.8E-09 56.9 -2.6 58 100-165 44-104 (136)
443 2dnp_A RNA-binding protein 14; 96.6 0.00079 2.7E-08 47.8 2.0 35 99-133 8-42 (90)
444 2dnq_A RNA-binding protein 4B; 96.6 0.00029 9.8E-09 50.2 -0.4 34 100-133 8-41 (90)
445 2hvz_A Splicing factor, argini 96.6 0.0018 6E-08 47.0 3.9 35 101-135 1-35 (101)
446 1wel_A RNA-binding protein 12; 96.6 8.4E-05 2.9E-09 56.6 -3.6 60 99-165 24-83 (124)
447 1x4g_A Nucleolysin TIAR; struc 96.6 0.00032 1.1E-08 52.0 -0.3 37 99-135 24-60 (109)
448 3ulh_A THO complex subunit 4; 96.5 0.001 3.4E-08 48.9 2.4 59 99-165 28-86 (107)
449 1u6f_A Tcubp1, RNA-binding pro 96.5 0.00012 4.1E-09 56.9 -2.9 60 99-165 41-100 (139)
450 1wex_A Hypothetical protein (r 96.5 0.00099 3.4E-08 48.9 2.2 54 100-166 15-68 (104)
451 1sjr_A Polypyrimidine tract-bi 96.5 0.00098 3.4E-08 53.0 2.2 54 101-165 47-100 (164)
452 3lqv_A PRE-mRNA branch site pr 96.5 0.0005 1.7E-08 51.4 0.5 56 100-165 8-63 (115)
453 2db1_A Heterogeneous nuclear r 96.5 0.00012 4.2E-09 55.2 -2.9 59 99-165 16-77 (118)
454 1wez_A HnRNP H', FTP-3, hetero 96.5 8E-05 2.7E-09 54.7 -4.0 59 99-166 14-72 (102)
455 3zzy_A Polypyrimidine tract-bi 96.5 0.0011 3.7E-08 50.7 2.2 54 101-165 29-82 (130)
456 2voo_A Lupus LA protein; RNA-b 96.5 0.0019 6.5E-08 53.1 3.8 100 59-166 63-167 (193)
457 1h2v_Z 20 kDa nuclear CAP bind 96.5 0.00018 6.3E-09 57.1 -2.3 60 99-165 38-97 (156)
458 3p3d_A Nucleoporin 53; structu 96.5 0.0015 5.1E-08 49.3 2.8 78 8-86 7-98 (132)
459 2dgu_A Heterogeneous nuclear r 96.4 0.0011 3.7E-08 48.4 1.9 34 100-133 11-44 (103)
460 2f3j_A RNA and export factor b 96.4 0.00032 1.1E-08 57.0 -1.5 58 100-165 88-145 (177)
461 2e5j_A Methenyltetrahydrofolat 96.4 0.0022 7.6E-08 46.2 3.2 54 100-165 19-72 (97)
462 2cq2_A Hypothetical protein LO 96.3 0.0025 8.5E-08 47.5 3.3 54 100-166 25-80 (114)
463 4a8x_A RNA-binding protein wit 96.3 0.0015 5.1E-08 46.0 2.0 37 100-136 4-40 (88)
464 2cqh_A IGF-II mRNA-binding pro 96.3 0.00055 1.9E-08 49.0 -0.4 29 100-128 8-37 (93)
465 2cpx_A Hypothetical protein FL 96.3 0.00011 3.8E-09 55.0 -4.3 60 99-165 24-83 (115)
466 1fj7_A Nucleolin RBD1, protein 96.3 0.00012 4.2E-09 53.4 -4.0 58 100-165 17-74 (101)
467 2e5i_A Heterogeneous nuclear r 96.3 0.002 6.7E-08 48.9 2.6 33 101-133 26-58 (124)
468 2ywk_A Putative RNA-binding pr 96.3 0.002 6.7E-08 46.1 2.5 59 99-165 15-73 (95)
469 3q2s_C Cleavage and polyadenyl 96.3 0.00028 9.7E-09 59.9 -2.4 60 99-165 67-128 (229)
470 3ctr_A Poly(A)-specific ribonu 96.3 0.0076 2.6E-07 42.9 5.3 52 10-69 7-58 (101)
471 3pq1_A Poly(A) RNA polymerase; 96.2 0.0035 1.2E-07 58.3 4.2 57 8-70 53-109 (464)
472 2hgm_A HNRPF protein, heteroge 96.2 0.00038 1.3E-08 53.1 -2.0 59 99-166 41-101 (126)
473 2e44_A Insulin-like growth fac 96.1 0.0022 7.4E-08 46.1 2.1 36 100-135 15-51 (96)
474 2cqi_A Nucleolysin TIAR; RNA r 96.1 0.0024 8.3E-08 46.5 2.4 58 99-165 14-71 (103)
475 1wg1_A KIAA1579 protein, homol 96.1 0.0009 3.1E-08 47.4 0.0 52 100-165 5-56 (88)
476 3egn_A RNA-binding protein 40; 96.1 0.00017 5.9E-09 56.3 -4.2 62 100-165 45-108 (143)
477 2cq3_A RNA-binding protein 9; 96.1 0.0026 8.8E-08 46.3 2.4 58 99-165 14-71 (103)
478 2dgw_A Probable RNA-binding pr 96.1 0.00041 1.4E-08 49.4 -2.0 58 99-165 9-66 (91)
479 1x4a_A Splicing factor, argini 96.1 0.003 1E-07 46.6 2.6 57 99-165 21-77 (109)
480 2nlw_A Eukaryotic translation 96.1 0.00052 1.8E-08 50.5 -1.6 57 100-165 15-77 (105)
481 2dng_A Eukaryotic translation 96.1 0.00026 8.8E-09 51.9 -3.3 60 99-166 14-73 (103)
482 2cpf_A RNA binding motif prote 96.1 0.0018 6E-08 46.7 1.3 60 100-165 5-66 (98)
483 1x5o_A RNA binding motif, sing 96.0 0.0021 7.3E-08 47.7 1.8 59 99-165 24-82 (114)
484 2l08_A Regulator of nonsense t 96.0 0.0052 1.8E-07 43.9 3.5 70 8-77 9-81 (97)
485 2ytc_A PRE-mRNA-splicing facto 96.0 0.0024 8E-08 44.6 1.8 36 99-134 11-46 (85)
486 2fc9_A NCL protein; structure 96.0 0.0035 1.2E-07 45.4 2.7 56 99-165 14-69 (101)
487 2xs2_A Deleted in azoospermia- 96.0 0.003 1E-07 45.9 2.2 52 99-156 8-59 (102)
488 2dhg_A TRNA selenocysteine ass 96.0 0.0032 1.1E-07 45.9 2.3 59 99-165 8-67 (104)
489 2cpj_A Non-POU domain-containi 96.0 0.0029 9.8E-08 45.7 2.0 35 99-133 14-48 (99)
490 2a3j_A U1 small nuclear ribonu 95.8 0.00059 2E-08 52.1 -2.3 56 100-165 29-88 (127)
491 2kvi_A Nuclear polyadenylated 95.8 0.0037 1.3E-07 44.9 2.1 34 99-132 9-43 (96)
492 2cpi_A CCR4-NOT transcription 95.7 0.0026 8.8E-08 47.2 1.0 64 98-165 13-79 (111)
493 2xnq_A Nuclear polyadenylated 95.6 0.0049 1.7E-07 44.4 2.2 34 99-132 21-55 (97)
494 2e5g_A U6 snRNA-specific termi 95.5 0.0065 2.2E-07 43.4 2.4 31 100-130 8-38 (94)
495 3u1l_A PRE-mRNA-splicing facto 95.3 0.0067 2.3E-07 51.5 2.3 85 65-165 102-195 (240)
496 2cpd_A Apobec-1 stimulating pr 94.9 0.011 3.9E-07 42.5 2.1 32 99-130 14-47 (99)
497 2hzc_A Splicing factor U2AF 65 94.9 0.013 4.4E-07 40.9 2.3 25 100-124 6-30 (87)
498 1fjc_A Nucleolin RBD2, protein 94.4 0.012 4E-07 42.1 1.2 32 99-130 15-46 (96)
499 2bz2_A Negative elongation fac 93.7 0.01 3.5E-07 44.7 -0.3 52 99-165 38-89 (121)
500 3tht_A Alkylated DNA repair pr 93.2 0.048 1.6E-06 48.8 3.1 54 100-166 18-73 (345)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=2.2e-24 Score=181.52 Aligned_cols=155 Identities=21% Similarity=0.359 Sum_probs=122.9
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
++.+.++|||+|||+++|+++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|+..++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHH
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAM 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~ 163 (347)
+.+...... ........++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.|+.. ..+.++|.
T Consensus 89 ~~~~~~~~~-~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--F~~~~~A~ 160 (196)
T 1l3k_A 89 AVSREDSQR-PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG-----SGKKRGFAFVT--FDDHDSVD 160 (196)
T ss_dssp CCC------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHH
T ss_pred ccCcccccc-cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC-----CCCccceEEEE--ECCHHHHH
Confidence 876543221 12223457899999999999999999999999998777765532 22333334443 34577777
Q ss_pred HHH
Q psy630 164 SKY 166 (347)
Q Consensus 164 ~~y 166 (347)
++.
T Consensus 161 ~A~ 163 (196)
T 1l3k_A 161 KIV 163 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.90 E-value=2.7e-24 Score=183.54 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=120.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|+.. ++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999986 999999999999887
Q ss_pred CcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHH
Q psy630 85 DSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMS 164 (347)
Q Consensus 85 ~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~ 164 (347)
...... ..-...++||+|||..+++++|+++|+.||.|....+..++. ..|+.|+.. ..+.++|.+
T Consensus 93 ~~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-------~~~g~~fV~--f~~~~~a~~ 158 (213)
T 4f02_A 93 QRDPSL-----RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------GSKGYGFVH--FETQEAAER 158 (213)
T ss_dssp CCCTHH-----HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------EEEEEEEEE--ESSHHHHHH
T ss_pred cccccc-----cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-------CCceEEEEE--eCCHHHHHH
Confidence 654432 122346799999999999999999999999998777655432 123333333 446777776
Q ss_pred H
Q psy630 165 K 165 (347)
Q Consensus 165 ~ 165 (347)
+
T Consensus 159 A 159 (213)
T 4f02_A 159 A 159 (213)
T ss_dssp H
T ss_pred H
Confidence 6
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.89 E-value=1.5e-23 Score=171.56 Aligned_cols=144 Identities=20% Similarity=0.348 Sum_probs=119.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
.++|||+|||+++++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|+.. ++..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999984 99999999999998876
Q ss_pred ccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 87 HNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 87 ~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.... ....++||+|||..+++++|+++|+.||.+....+..++. .|+.++.|+.. ..+.++|.++
T Consensus 82 ~~~~-------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 146 (167)
T 1fxl_A 82 SSAS-------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-----TGVSRGVGFIR--FDKRIEAEEA 146 (167)
T ss_dssp CCGG-------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHHHH
T ss_pred Cccc-------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC-----CCCccceEEEE--eCCHHHHHHH
Confidence 5431 2456799999999999999999999999998777655432 12223333333 3456666666
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.88 E-value=2.1e-23 Score=171.03 Aligned_cols=145 Identities=19% Similarity=0.304 Sum_probs=120.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+++++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|+. +++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999999899999999999999999999998 59999999999999887
Q ss_pred cccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 86 SHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 86 ~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
+.... ....++||+|||..+++++|+++|+.||.+....+..++. .|+.++.|+.. ..+.++|.++
T Consensus 82 ~~~~~-------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 147 (168)
T 1b7f_A 82 PGGES-------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL-----TGRPRGVAFVR--YNKREEAQEA 147 (168)
T ss_dssp CCSST-------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHHHH
T ss_pred CCccc-------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC-----CCCcceEEEEE--ECCHHHHHHH
Confidence 65432 2446899999999999999999999999998776655442 12222333333 3456676666
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.88 E-value=1.1e-23 Score=172.52 Aligned_cols=144 Identities=22% Similarity=0.452 Sum_probs=119.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
+.++|||+|||+++|+++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|+.. +..+.|+.+.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999985 6789999999988766
Q ss_pred ccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 87 HNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 87 ~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
... .-...++||+|||..+++++|+++|+.||.+....+..++. .|+.|+.|+.. ..+.++|.++
T Consensus 81 ~~~-------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 145 (167)
T 2cjk_A 81 RDE-------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD-----TGQSRGFGFVT--YDSADAVDRV 145 (167)
T ss_dssp HHH-------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS-----SSTTSEEEEEE--ESSHHHHHHH
T ss_pred hhh-------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 432 12346899999999999999999999999998777765532 23344445444 3456666665
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.7e-23 Score=167.98 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=117.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~~~ 87 (347)
|+|||+|||+++|+++|+++|++||.|.++++++++. ++++|||||+|.+.++|.+|+. +++..+.|+.+.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999974 8899999999999999999996 5999999999999988665
Q ss_pred cccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 88 NRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 88 ~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
... ..-...++||+|||..+++++|+++|+.||.+....+..++. .|+.|+.||.. ..+.++|..+
T Consensus 80 ~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 145 (166)
T 3md3_A 80 QQS-----SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----TGSSRGYGFVS--FTSQDDAQNA 145 (166)
T ss_dssp CCC-----CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----TCCEEEEEEEE--ESCHHHHHHH
T ss_pred CCC-----CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC-----CCCcceEEEEE--eCCHHHHHHH
Confidence 432 122456899999999999999999999999998777765432 12223334433 3456777666
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.87 E-value=1.7e-22 Score=172.62 Aligned_cols=153 Identities=16% Similarity=0.295 Sum_probs=120.6
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++|+++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456899999999999999999999999999999999999899999999999999999999999 5999999999999887
Q ss_pred Ccccccchh----hhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHH
Q psy630 85 DSHNRMAEN----MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKS 160 (347)
Q Consensus 85 ~~~~~~~~~----~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~ 160 (347)
......... ....-...++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~g~~~g~afV~--F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT-----TGKHKGYGFIE--YEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC-----CCCcCceEEEE--ecCHH
Confidence 765432211 11223447899999999999999999999999998777765532 22333334443 34577
Q ss_pred HHHHH
Q psy630 161 EAMSK 165 (347)
Q Consensus 161 eA~~~ 165 (347)
+|.++
T Consensus 179 ~A~~A 183 (216)
T 2qfj_A 179 SSQDA 183 (216)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77666
No 8
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.87 E-value=1.1e-21 Score=161.22 Aligned_cols=100 Identities=34% Similarity=0.476 Sum_probs=93.8
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+++..+..|.||||+|+..+..+++++|++ .|+++|.+|..|+||||+||..|+.+++++|++ .|++++.+|..|+|
T Consensus 61 ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~T 138 (169)
T 4gpm_A 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRT 138 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred cchhhhccCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCC
Confidence 4567788899999999999999999999999 899999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 139 pL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 139 PLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHTC--
T ss_pred HHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999999999997
No 9
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=1.2e-21 Score=144.20 Aligned_cols=92 Identities=34% Similarity=0.482 Sum_probs=86.5
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHc
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 333 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~ 333 (347)
.|.|+||+|+..+..+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence 36899999998888889999988 799999999999999999999999999999999 7999999999999999999999
Q ss_pred CCHHHHHHHHhCCC
Q psy630 334 EHTDLIEYLVNSGS 347 (347)
Q Consensus 334 ~~~~~v~~Ll~~GA 347 (347)
|+.+++++|+++||
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 99999999999997
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=7.9e-22 Score=151.27 Aligned_cols=109 Identities=21% Similarity=0.381 Sum_probs=74.3
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|+.. ++..+.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999986 55899999999999999999975 999999999999988
Q ss_pred Ccccccchhhh-hhcccccccccCCcccccchh
Q psy630 85 DSHNRMAENME-DRFNQACDYLPSLVKKLDSST 116 (347)
Q Consensus 85 ~~~~~~~~~~~-~~f~~~~~~v~~l~~~~~~e~ 116 (347)
.++..+..... ..-...++||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 77654333222 122335789999999988763
No 11
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=99.86 E-value=1.4e-22 Score=145.42 Aligned_cols=85 Identities=29% Similarity=0.650 Sum_probs=81.1
Q ss_pred hhhcccccccccCCc--ccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy630 95 EDRFNQACDYLPSLV--KKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKE 172 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~--~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~ 172 (347)
+..|..+..+|++++ ..++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++||++|||++||+++++
T Consensus 3 ~~~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~ 82 (89)
T 1hbk_A 3 AQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSE 82 (89)
T ss_dssp HHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 457888999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCh
Q psy630 173 VDAGWED 179 (347)
Q Consensus 173 l~~~~~~ 179 (347)
+.+.|.+
T Consensus 83 l~~~~~~ 89 (89)
T 1hbk_A 83 IFPYWQD 89 (89)
T ss_dssp HCTTTTC
T ss_pred HcccccC
Confidence 9999963
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.86 E-value=1.6e-21 Score=160.80 Aligned_cols=145 Identities=21% Similarity=0.322 Sum_probs=115.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCC--CceeEEEEEEcCHHHHHHHHhc-CCCccC---Ccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTG--LSKGFGFVTFQNKEAVDKVFST-DSHVLE---GSRLS 80 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~--~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~l~ 80 (347)
+.++|||+|||+++|+++|+++|++||.|.++++++++.++ +++|||||+|.+.++|.+|+.. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56799999999999999999999999999999999999877 8999999999999999999985 777665 46666
Q ss_pred ccCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHH
Q psy630 81 IQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKS 160 (347)
Q Consensus 81 v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~ 160 (347)
+.++.+.... .....++||+|||..+++++|+++|+.||.|....+..++.| +.|+.|+.. ..+.+
T Consensus 82 ~~~~~~~~~~------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g------~~~g~afV~--f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEKNN------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG------LSRGCAFVT--FTTRA 147 (175)
T ss_dssp EEECGGGCCS------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS------CEEEEEEEE--ESSHH
T ss_pred Eccccccccc------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCC------CEEEEEEEE--ECCHH
Confidence 6665543321 234578999999999999999999999999987776655432 233334433 44567
Q ss_pred HHHHH
Q psy630 161 EAMSK 165 (347)
Q Consensus 161 eA~~~ 165 (347)
+|.++
T Consensus 148 ~A~~A 152 (175)
T 3nmr_A 148 MAQTA 152 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 13
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-22 Score=144.91 Aligned_cols=84 Identities=35% Similarity=0.611 Sum_probs=80.5
Q ss_pred hhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy630 95 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVD 174 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~ 174 (347)
...|..+..+|++++..++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++||++|||++||++++++.
T Consensus 2 ~~~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 2 SQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy630 175 AGWE 178 (347)
Q Consensus 175 ~~~~ 178 (347)
+.|.
T Consensus 82 ~~~~ 85 (86)
T 1st7_A 82 AKYS 85 (86)
T ss_dssp HHHC
T ss_pred hhhc
Confidence 9885
No 14
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=99.85 E-value=2.6e-22 Score=144.50 Aligned_cols=84 Identities=36% Similarity=0.684 Sum_probs=80.6
Q ss_pred hhcccccccccCCc-ccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy630 96 DRFNQACDYLPSLV-KKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVD 174 (347)
Q Consensus 96 ~~f~~~~~~v~~l~-~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~ 174 (347)
..|..+..+|++++ ..++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++||++|||++||++++++.
T Consensus 12 ~~F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 12 DDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp STHHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 46888999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCh
Q psy630 175 AGWED 179 (347)
Q Consensus 175 ~~~~~ 179 (347)
+.|.+
T Consensus 92 ~~~~~ 96 (96)
T 2lbb_A 92 PSWRN 96 (96)
T ss_dssp GGGTC
T ss_pred chhcC
Confidence 99963
No 15
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-22 Score=147.46 Aligned_cols=88 Identities=40% Similarity=0.804 Sum_probs=84.7
Q ss_pred hhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy630 93 NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKE 172 (347)
Q Consensus 93 ~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~ 172 (347)
.+...|..|..+|++++..++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++|+++|||++||++|++
T Consensus 7 ~l~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~YI~lv~~ 86 (109)
T 2cop_A 7 GLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKK 86 (109)
T ss_dssp CSHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChh
Q psy630 173 VDAGWEDK 180 (347)
Q Consensus 173 l~~~~~~~ 180 (347)
|.+.|...
T Consensus 87 l~~~~~~~ 94 (109)
T 2cop_A 87 LDPGWNPQ 94 (109)
T ss_dssp HCTTCCCC
T ss_pred Hhhhhccc
Confidence 99999987
No 16
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=99.85 E-value=4.1e-22 Score=142.35 Aligned_cols=84 Identities=32% Similarity=0.563 Sum_probs=80.7
Q ss_pred hhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy630 94 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEV 173 (347)
Q Consensus 94 ~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l 173 (347)
++..|..+..+|++++..++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++||++|||++||+++++|
T Consensus 4 L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l 83 (89)
T 3epy_A 4 LQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKEL 83 (89)
T ss_dssp HHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccC
Q psy630 174 DAGW 177 (347)
Q Consensus 174 ~~~~ 177 (347)
.+.|
T Consensus 84 ~~ky 87 (89)
T 3epy_A 84 IEKY 87 (89)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8875
No 17
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=99.84 E-value=7.5e-22 Score=140.72 Aligned_cols=84 Identities=32% Similarity=0.587 Sum_probs=79.9
Q ss_pred hhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy630 95 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVD 174 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l~ 174 (347)
...|..+..+|++++..++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++||++|||++||++++++.
T Consensus 3 ~~~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~ 82 (87)
T 2cb8_A 3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELK 82 (87)
T ss_dssp HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy630 175 AGWE 178 (347)
Q Consensus 175 ~~~~ 178 (347)
+.|.
T Consensus 83 ~~~~ 86 (87)
T 2cb8_A 83 KKYG 86 (87)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
No 18
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.84 E-value=1.2e-20 Score=154.83 Aligned_cols=100 Identities=34% Similarity=0.474 Sum_probs=95.5
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+++..+..|.|++|+|+..+...++++|+. .+++++.+|..|+||||+||..|+.+++++||+ .|+++|.+|..|+|
T Consensus 28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gadvn~~d~~G~T 105 (169)
T 4gpm_A 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKDSDGRT 105 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhccCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCC
Confidence 4677888999999999999999999999998 899999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.++|++|+++||
T Consensus 106 pLh~A~~~g~~~~v~~Ll~~ga 127 (169)
T 4gpm_A 106 PLHHAAENGHKEVVKLLISKGA 127 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999986
No 19
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.8e-21 Score=141.44 Aligned_cols=80 Identities=25% Similarity=0.503 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
+.++|||+|||+++|+++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++. |+..+.|++|+|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467999999999999999999999999999999999999999999999999999999999985 9999999999999886
Q ss_pred c
Q psy630 86 S 86 (347)
Q Consensus 86 ~ 86 (347)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 20
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=145.23 Aligned_cols=88 Identities=34% Similarity=0.639 Sum_probs=84.3
Q ss_pred hhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy630 94 MEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEV 173 (347)
Q Consensus 94 ~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~~~l 173 (347)
+...|..+..+|++++..++.+++++||++|+|+++|+|+.++||++++++++||+||+++++|+++|||++||++|++|
T Consensus 16 ~~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm~~YI~lv~~l 95 (116)
T 2cqu_A 16 SQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSL 95 (116)
T ss_dssp CHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhh
Q psy630 174 DAGWEDKE 181 (347)
Q Consensus 174 ~~~~~~~~ 181 (347)
.+.|....
T Consensus 96 ~~~~~~~~ 103 (116)
T 2cqu_A 96 SPSLESSS 103 (116)
T ss_dssp CSCCCCCC
T ss_pred cccccccc
Confidence 99999873
No 21
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=3.6e-21 Score=158.90 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=104.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
++...++|||+|||+++++++|+++|++||.+.. .++++..+|.++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 5677899999999999999999999999998766 344555678999999999999999999998899999999999999
Q ss_pred CCcccccchhhhhhcccccccccCCcccccchhhHHHHhhcccccee
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVG 130 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g 130 (347)
+.++.... .-...++||+|||..+++++|+++|+.||.|...
T Consensus 88 ~~~~~~~~-----~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 88 PKGRDSKK-----VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp CCCSSCST-----TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred CCCccccc-----cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 87754421 2245789999999999999999999999998754
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.82 E-value=5.8e-21 Score=161.51 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=109.8
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 7 QLNKIFVGNLP-WTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 7 ~~~~l~V~nLp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
+.++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++. |+..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 79999999999999999999999865 369999999999999999984 999999999999977
Q ss_pred Ccccccch-----------------hhhhhc-------------ccccccccCCcccccchhhHHHHhhcccc--ceecc
Q psy630 85 DSHNRMAE-----------------NMEDRF-------------NQACDYLPSLVKKLDSSTLLKFYALYKQA--TVGQC 132 (347)
Q Consensus 85 ~~~~~~~~-----------------~~~~~f-------------~~~~~~v~~l~~~~~~e~l~~~f~~fg~v--~~g~~ 132 (347)
........ .....| ...++||+|||..+++++|+++|+.||.+ ....+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 53221000 000001 13469999999999999999999999998 55554
Q ss_pred cCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 133 NIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 133 ~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
..++. +.++.|+. ...+.++|.++.
T Consensus 158 ~~~~~-------~~~g~gfV--~f~~~~~A~~Ai 182 (205)
T 3tyt_A 158 FSGKS-------ERSSSGLL--EWDSKSDALETL 182 (205)
T ss_dssp CSCCS-------SSSEEEEE--ECSSHHHHHHHH
T ss_pred EcCCC-------CCceEEEE--EeCCHHHHHHHH
Confidence 44321 11222333 344677777763
No 23
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.82 E-value=3.3e-20 Score=165.03 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=74.6
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELK----KFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
++.+..++|||+|||+++++++|+ ++|++||.|..|++++ +|+++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456778999999999999999976 8999999999999875 688999999999999999999964 99999999
Q ss_pred cccccCCCccc
Q psy630 78 RLSIQPSDSHN 88 (347)
Q Consensus 78 ~l~v~~~~~~~ 88 (347)
.|.|.++....
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99998875543
No 24
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.82 E-value=8.7e-20 Score=162.48 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=122.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999996 59999999999999987
Q ss_pred cccccchhhhhhcccccccccCCcccc-cchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHH
Q psy630 86 SHNRMAENMEDRFNQACDYLPSLVKKL-DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMS 164 (347)
Q Consensus 86 ~~~~~~~~~~~~f~~~~~~v~~l~~~~-~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~ 164 (347)
+..... ......++||+|||..+ ++++|+++|+.||.|....+..+..| +.|+.||. ...+.++|.+
T Consensus 174 ~~~~~~----~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g------~~~g~afV--~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQLTP----ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDG------QLKGFAVL--EYETAEMAEE 241 (284)
T ss_dssp GGGCCT----TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSC------CEEEEEEE--ECSSHHHHHH
T ss_pred CCCCCc----ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCC------CcccEEEE--EeCCHHHHHH
Confidence 755422 22455789999999995 89999999999999987776665432 23333333 3556777777
Q ss_pred H
Q psy630 165 K 165 (347)
Q Consensus 165 ~ 165 (347)
+
T Consensus 242 A 242 (284)
T 3smz_A 242 A 242 (284)
T ss_dssp H
T ss_pred H
Confidence 6
No 25
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.82 E-value=1e-20 Score=155.57 Aligned_cols=117 Identities=15% Similarity=0.379 Sum_probs=100.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCcc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEY----G-------QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVL 74 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~ 74 (347)
++.++|||+|||+++|+++|+++|++| | .|..+.+ +.++|||||+|.+.++|.+|+.+++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 467899999999999999999999999 6 6666666 3457999999999999999996699999
Q ss_pred CCccccccCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 75 EGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 75 ~g~~l~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
.|++|.|.++.+.... -...++||+|||..+++++|+++|+.||.+....+..+
T Consensus 76 ~g~~i~v~~~~~~~~~-------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTEECEEECCSSCCCC-------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred cCceeeecCCcccCCC-------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 9999999987664432 12578999999999999999999999999987776554
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=138.15 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=76.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc--CCCccCCccccccCC
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLEGSRLSIQPS 84 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~--~~~~~~g~~l~v~~~ 84 (347)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.||.++|||||+|.+.++|.+|++. ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 899999999999999999999999999999999974 677899999999999
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88655
No 27
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=99.80 E-value=9.3e-21 Score=139.41 Aligned_cols=87 Identities=37% Similarity=0.684 Sum_probs=80.9
Q ss_pred hhhhcccccccccCCcc----cccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy630 94 MEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIAL 169 (347)
Q Consensus 94 ~~~~f~~~~~~v~~l~~----~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~ 169 (347)
+...|..+..+|++++. .++.+++++||++|+|+++|+|+.++||+++++|++||+||+++++|+++|||++||++
T Consensus 8 l~~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~ 87 (106)
T 2wh5_A 8 CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITE 87 (106)
T ss_dssp -CHHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45679999999999987 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChh
Q psy630 170 LKEVDAGWEDK 180 (347)
Q Consensus 170 ~~~l~~~~~~~ 180 (347)
+++|.+.+.+.
T Consensus 88 v~~l~~k~~~t 98 (106)
T 2wh5_A 88 MKLVAQKVIDT 98 (106)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhhcc
Confidence 99998877654
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=137.15 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=79.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
+...++|||+|||+++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|++|++. |+..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999985 99999999999998
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.....
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 866543
No 29
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=99.80 E-value=1.6e-20 Score=138.02 Aligned_cols=82 Identities=35% Similarity=0.594 Sum_probs=78.4
Q ss_pred hhhcccccccccCCcc----cccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy630 95 EDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALL 170 (347)
Q Consensus 95 ~~~f~~~~~~v~~l~~----~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~yi~~~ 170 (347)
+..|..+..+|++++. .++.++++.||++|+|+++|+|+.++||+++++|++||+||+++++||++|||++||+++
T Consensus 5 ~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~~v 84 (106)
T 3fp5_A 5 KAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKL 84 (106)
T ss_dssp HHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5679999999999985 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc
Q psy630 171 KEVDAG 176 (347)
Q Consensus 171 ~~l~~~ 176 (347)
+++.+.
T Consensus 85 ~~l~~~ 90 (106)
T 3fp5_A 85 LEILKK 90 (106)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999998
No 30
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=140.23 Aligned_cols=90 Identities=36% Similarity=0.644 Sum_probs=82.5
Q ss_pred chhhhhhcccccccccCCcc----cccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 91 AENMEDRFNQACDYLPSLVK----KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 91 ~~~~~~~f~~~~~~v~~l~~----~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...+...|..|..+|+++|. .++.++++.||++|+|+++|+|+.++||+++++|++||+||+++++||+++||++|
T Consensus 21 ~~dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~Y 100 (119)
T 3flv_A 21 QSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAY 100 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 34567889999999999986 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCChh
Q psy630 167 IALLKEVDAGWEDK 180 (347)
Q Consensus 167 i~~~~~l~~~~~~~ 180 (347)
|+++++|.+++...
T Consensus 101 I~~v~~l~~~~~~~ 114 (119)
T 3flv_A 101 VEEMKKIIETMPMT 114 (119)
T ss_dssp HHHHHHHHHHSCC-
T ss_pred HHHHHHHHhhCCCC
Confidence 99999998887654
No 31
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=7.6e-20 Score=163.52 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=110.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
.+..++|||+|||+++|+++|+++|++||.|..|++++++. + ++|||||+|.+.++|.+|+.+++..+.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 45678999999999999999999999999999999999874 3 589999999999999999988999999999999876
Q ss_pred CcccccchhhhhhcccccccccCCcccccchhhHHHHhhcc-ccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHH
Q psy630 85 DSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAM 163 (347)
Q Consensus 85 ~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg-~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~ 163 (347)
. ..++||+|||..+++++|.++|+.|| .+....+..++. |+.++.||.. ..+.++|.
T Consensus 116 ~--------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~------~~~~g~afV~--f~~~~~a~ 173 (292)
T 2ghp_A 116 T--------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------NTSRRFAYID--VTSKEDAR 173 (292)
T ss_dssp C--------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------CCEEEEE--CSSHHHHH
T ss_pred C--------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC------CCcceEEEEE--ECCHHHHH
Confidence 3 45789999999999999999999999 988766654432 3334444443 44566776
Q ss_pred HHH
Q psy630 164 SKY 166 (347)
Q Consensus 164 ~~y 166 (347)
.+.
T Consensus 174 ~A~ 176 (292)
T 2ghp_A 174 YCV 176 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-20 Score=136.16 Aligned_cols=83 Identities=18% Similarity=0.357 Sum_probs=75.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCC--eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCC----ccCC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQ--IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSH----VLEG 76 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~----~~~g 76 (347)
....+.+|||+|||+++|+++|+++|++||. +.+|++++|+.||+++|||||+|.+.++|.+|++. |+. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567899999999999999999999999995 67999999999999999999999999999999985 654 5899
Q ss_pred ccccccCCCc
Q psy630 77 SRLSIQPSDS 86 (347)
Q Consensus 77 ~~l~v~~~~~ 86 (347)
|+|.|.+|.+
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999998864
No 33
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=2.6e-19 Score=130.09 Aligned_cols=82 Identities=33% Similarity=0.770 Sum_probs=76.5
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
+...+.++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.++..+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999888889999999987
Q ss_pred CC
Q psy630 83 PS 84 (347)
Q Consensus 83 ~~ 84 (347)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.79 E-value=2.3e-20 Score=164.11 Aligned_cols=135 Identities=19% Similarity=0.347 Sum_probs=112.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|+. .++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34557999999999999999999999999999999854 36899999999999999998 599999999999998
Q ss_pred CCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHH
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAM 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~ 163 (347)
+.+ ..++||+|||..+++++|+++|+.||.|....+..+.. |+.++.||.. ..+.++|.
T Consensus 93 a~~-------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~------g~~~g~afV~--f~~~~~A~ 151 (261)
T 3sde_A 93 ATH-------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR------GRATGKGFVE--FAAKPPAR 151 (261)
T ss_dssp CCC-------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT------SCEEEEEEEE--ESSHHHHH
T ss_pred ccc-------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC------CCcCcEEEEE--eCCHHHHH
Confidence 864 34799999999999999999999999998777766532 3333344444 44567776
Q ss_pred HHH
Q psy630 164 SKY 166 (347)
Q Consensus 164 ~~y 166 (347)
.+.
T Consensus 152 ~A~ 154 (261)
T 3sde_A 152 KAL 154 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 35
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.79 E-value=3.1e-19 Score=140.85 Aligned_cols=98 Identities=29% Similarity=0.325 Sum_probs=91.6
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+..+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|+||
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tp 116 (136)
T 2jab_A 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTA 116 (136)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCH
Confidence 456677889999999999888899999998 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~G 346 (347)
||+|+..|+.+++++|+++|
T Consensus 117 l~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 117 FDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999987
No 36
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.79 E-value=6e-20 Score=144.98 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=92.6
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCC-CchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-GLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
.+.+..+..+.|+||+|+. +...++++|++ .+++++.+|.. |+||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 36 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~ 112 (136)
T 1d9s_A 36 ADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGR 112 (136)
T ss_dssp CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSS
T ss_pred CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCC
Confidence 3566778889999999999 88889999988 79999999999 9999999999999999999999 7999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||+|+..++.+++++|+++||
T Consensus 113 tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 113 LPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999987
No 37
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.79 E-value=3.3e-19 Score=138.16 Aligned_cols=94 Identities=27% Similarity=0.323 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
+..+.++||+|+..+...++++|++ .+.+++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence 4567789999888888888888888 789999999999999999999999999999998 79999999999999999999
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..|+.+++++|+++||
T Consensus 82 ~~~~~~~v~~Ll~~ga 97 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGA 97 (123)
T ss_dssp HHTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 9999999999999986
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.79 E-value=2.1e-19 Score=154.86 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=102.4
Q ss_pred ccCCCeEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 5 IRQLNKIFVGNLPW-TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 5 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
....++|||+|||+ ++++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998765 7899999999999999998 59999999999998
Q ss_pred CCCcccccc----h-------------------hh-----hhhcccccccccCCcccccchhhHHHHhhcc-ccceeccc
Q psy630 83 PSDSHNRMA----E-------------------NM-----EDRFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQCN 133 (347)
Q Consensus 83 ~~~~~~~~~----~-------------------~~-----~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg-~v~~g~~~ 133 (347)
++.+..... . .. ...-...++||+|||..+++++|+++|+.|| .+....+.
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 876541100 0 00 0011246799999999999999999999999 88766653
No 39
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=5.5e-20 Score=154.77 Aligned_cols=125 Identities=14% Similarity=0.337 Sum_probs=100.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCcc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEY----G-------QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVL 74 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~ 74 (347)
...++|||+|||+++++++|+++|++| | .|..+.+ +.++|||||+|.+.++|.+|+.+++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 356899999999999999999999999 4 5555554 5668999999999999999997799999
Q ss_pred CCccccccCCCcccccch-------------hhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 75 EGSRLSIQPSDSHNRMAE-------------NMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 75 ~g~~l~v~~~~~~~~~~~-------------~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
.|+.|.|.++.+...... .....-...++||+|||..+++++|+++|+.||.+....+..++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 999999998766422110 00011244789999999999999999999999999876665543
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=131.82 Aligned_cols=87 Identities=26% Similarity=0.655 Sum_probs=81.5
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
.+....++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+.+++..+.|+.|.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9887654
No 41
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=4.9e-19 Score=139.80 Aligned_cols=96 Identities=29% Similarity=0.325 Sum_probs=89.4
Q ss_pred ccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy630 250 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY 329 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~ 329 (347)
..+..|.|+||+|+..+...++++|++ .+++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHH
Confidence 456789999999988888888888888 799999999999999999999999999999999 799999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCC
Q psy630 330 AKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 330 A~~~~~~~~v~~Ll~~GA 347 (347)
|+..|+.+++++|+++||
T Consensus 83 A~~~~~~~~v~~Ll~~ga 100 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGA 100 (137)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 999999999999999986
No 42
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=2.2e-19 Score=137.41 Aligned_cols=95 Identities=27% Similarity=0.362 Sum_probs=90.1
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
.|..|.++||+|+..+...++++|+. .+++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence 46789999999998888889999998 799999999999999999999999999999999 7999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..++.+++++|+++||
T Consensus 83 ~~~~~~~~~~~Ll~~ga 99 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGA 99 (115)
T ss_dssp HTTTCHHHHHHHHTTSS
T ss_pred HHCCCHHHHHHHHHcCC
Confidence 99999999999999997
No 43
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.78 E-value=3.5e-19 Score=140.59 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=92.3
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCC-CCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD-GDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~-g~T 325 (347)
+.+..+..+.++||+|+..+..+++++|++ .+++++.+|..|+||||+|+. |+.+++++|++ +|++++.+|.. |+|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTBC
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCCC
Confidence 456678899999999999999999999998 799999999999999999999 99999999999 79999999999 999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga 102 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGA 102 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999986
No 44
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=131.60 Aligned_cols=86 Identities=26% Similarity=0.568 Sum_probs=79.9
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+.....++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456778999999999999999999999999999999999999999999999999999999999984 999999999999
Q ss_pred cCCCccc
Q psy630 82 QPSDSHN 88 (347)
Q Consensus 82 ~~~~~~~ 88 (347)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9987653
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=132.12 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=75.9
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
....++|||+|||+++|+++|+++|++||.|.+|+|++++. |.++|||||+|.+.++|.+|+..++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44568999999999999999999999999999999999987 99999999999999999999999999999999999876
Q ss_pred Cc
Q psy630 85 DS 86 (347)
Q Consensus 85 ~~ 86 (347)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 55
No 46
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.78 E-value=1.8e-18 Score=143.01 Aligned_cols=99 Identities=29% Similarity=0.407 Sum_probs=80.2
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~ 108 (179)
T 3f6q_A 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVP 108 (179)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCH
Confidence 345566777888888888777778888877 688888888888888888888888888888887 688888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 109 L~~A~~~~~~~~v~~Ll~~ga 129 (179)
T 3f6q_A 109 LHYACFWGQDQVAEDLVANGA 129 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHCCC
Confidence 888888888888888888875
No 47
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.77 E-value=2e-18 Score=140.56 Aligned_cols=92 Identities=27% Similarity=0.320 Sum_probs=45.0
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~ 332 (347)
..+.|+||+|+..+..+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+.
T Consensus 40 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~ 117 (165)
T 3twr_A 40 GRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAA 117 (165)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHH
T ss_pred cCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHH
Confidence 334444444444444444444444 444444444445555555555555555555554 355555444445555555555
Q ss_pred cCCHHHHHHHHhCC
Q psy630 333 IEHTDLIEYLVNSG 346 (347)
Q Consensus 333 ~~~~~~v~~Ll~~G 346 (347)
.|+.+++++|+++|
T Consensus 118 ~~~~~~v~~Ll~~g 131 (165)
T 3twr_A 118 KGKYEICKLLLQHG 131 (165)
T ss_dssp TTCHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcC
Confidence 55555555554444
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.2e-18 Score=125.28 Aligned_cols=79 Identities=28% Similarity=0.570 Sum_probs=75.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
.+|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999999999999999999999999999999985 999999999999998765
No 49
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.8e-19 Score=130.03 Aligned_cols=81 Identities=22% Similarity=0.480 Sum_probs=71.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYG--QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~ 85 (347)
.+|||+|||+++++++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|++|++ +|+..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999997 59999999999999987
Q ss_pred cccc
Q psy630 86 SHNR 89 (347)
Q Consensus 86 ~~~~ 89 (347)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 50
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.77 E-value=1.8e-18 Score=133.92 Aligned_cols=99 Identities=33% Similarity=0.471 Sum_probs=92.7
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..+.+++|+|+..+..+++++|.+ .+++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.||
T Consensus 27 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~ 104 (126)
T 1n0r_A 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTP 104 (126)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCH
Confidence 345566788999999999888899999998 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 105 l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 105 LHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999999997
No 51
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.77 E-value=1.3e-18 Score=141.12 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=93.0
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCC-ccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD-VNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~-i~~~d~~g~ 324 (347)
.+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++ ++.+|..|.
T Consensus 61 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~ 138 (162)
T 1ihb_A 61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGD 138 (162)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCC
Confidence 3567778899999999999998999999998 799999999999999999999999999999999 6998 699999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||+|+..|+.+++++|+++||
T Consensus 139 t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 139 TACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTC-
T ss_pred cHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999997
No 52
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=6.2e-19 Score=157.60 Aligned_cols=154 Identities=11% Similarity=0.130 Sum_probs=114.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
...++|||+|||+++++++|+++|++|| .|..+.+++++. |.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999875 8899999999999999999999 599999999999999
Q ss_pred CCcccccchhhhhhcccccccccCCccc-ccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHH
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEA 162 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~-~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA 162 (347)
+.+...............++||+|||.. +++++|+++|+.||.|....+..+.. ..|+.|+.|+.. ..+.++|
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~----~tg~~~g~afV~--F~~~~~A 267 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK----EHSFNNCCAFMV--FENKDSA 267 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------CCCEEEEEE--ESSHHHH
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC----cCCCCceEEEEE--eCCHHHH
Confidence 8775543222123345578999999999 99999999999999998776655432 013333334433 4457777
Q ss_pred HHHH
Q psy630 163 MSKY 166 (347)
Q Consensus 163 ~~~y 166 (347)
.++.
T Consensus 268 ~~A~ 271 (292)
T 2ghp_A 268 ERAL 271 (292)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 7663
No 53
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=5.9e-19 Score=124.40 Aligned_cols=75 Identities=35% Similarity=0.690 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
+|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|+++++..+.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999999999999999999865
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.1e-18 Score=126.20 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=76.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
...+.++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456788999999999999999999999999999999999998999999999999999999999975 9999999999998
Q ss_pred CC
Q psy630 83 PS 84 (347)
Q Consensus 83 ~~ 84 (347)
++
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 76
No 55
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=6.9e-19 Score=133.41 Aligned_cols=87 Identities=30% Similarity=0.574 Sum_probs=76.9
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
+...+.++|||+|||+++++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|+...+..+.|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999986799999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9877654
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=126.59 Aligned_cols=82 Identities=28% Similarity=0.474 Sum_probs=75.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
.+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4567999999999999999999999999999999999998999999999999999999999985 999999999999988
Q ss_pred Ccc
Q psy630 85 DSH 87 (347)
Q Consensus 85 ~~~ 87 (347)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 57
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=131.22 Aligned_cols=86 Identities=33% Similarity=0.764 Sum_probs=80.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
.....++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..++..+.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987654
No 58
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.77 E-value=4.5e-19 Score=143.36 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=89.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCch-HHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLN-CLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~t-pLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+.+..+..|.|+||+|+ .+...++++|++ .+++++.+|..|+| |||+|+..|+.+++++|++ +|++++.+|..|+|
T Consensus 37 ~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t 113 (156)
T 1bi7_B 37 NPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRL 113 (156)
T ss_dssp CTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCC
T ss_pred CCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHH-cCCCCcccCCCCCC
Confidence 56677889999999996 566678888888 79999999999999 9999999999999999999 69999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 114 pl~~A~~~~~~~~v~~Ll~~ga 135 (156)
T 1bi7_B 114 PVDLAEELGHRDVARYLRAAAG 135 (156)
T ss_dssp HHHHHHHHTCHHHHHHHSSCC-
T ss_pred HHHHHHHhCHHHHHHHHHHcCC
Confidence 9999999999999999999996
No 59
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.77 E-value=3.6e-19 Score=149.89 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=100.6
Q ss_pred CCeEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCCC
Q psy630 8 LNKIFVGNLPW-TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 8 ~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~~ 85 (347)
.++|||+|||+ ++++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+. +++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 6899999999999999998 59999999999998776
Q ss_pred cccccchh-----------------------h-----hhhcccccccccCCcccccchhhHHHHhhcc-ccceecccC
Q psy630 86 SHNRMAEN-----------------------M-----EDRFNQACDYLPSLVKKLDSSTLLKFYALYK-QATVGQCNI 134 (347)
Q Consensus 86 ~~~~~~~~-----------------------~-----~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg-~v~~g~~~~ 134 (347)
+....... . ...-...++||+|||..+++++|+++|+.|| .+....+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 43210000 0 0001246799999999999999999999999 888666643
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=130.04 Aligned_cols=87 Identities=33% Similarity=0.539 Sum_probs=80.9
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v 81 (347)
....+.++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456778899999999999999999999999999999999999899999999999999999999996 5999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99887654
No 61
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=2.6e-19 Score=159.41 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=109.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++|+++|+++|++|| |..+.+ ++++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34678999999999999999999999999 999887 56689999999999999999975 99999999999987
Q ss_pred CCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHH
Q psy630 84 SDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAM 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~ 163 (347)
+.+ ..++||+|||..+++++|.++|+.||.+....+..++. .|+.|+.||.. ..+.++|.
T Consensus 92 ~~~-------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~g~~~g~afV~--f~~~~~a~ 151 (284)
T 3smz_A 92 QPT-------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER-----TGQSKGYGFAE--YMKKDSAA 151 (284)
T ss_dssp CCC-------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHH
T ss_pred cCC-------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC-----CCccceEEEEE--ECCHHHHH
Confidence 542 25799999999999999999999999998776655432 12233334433 34566666
Q ss_pred HH
Q psy630 164 SK 165 (347)
Q Consensus 164 ~~ 165 (347)
.+
T Consensus 152 ~A 153 (284)
T 3smz_A 152 RA 153 (284)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 62
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=1.1e-18 Score=133.74 Aligned_cols=106 Identities=14% Similarity=0.249 Sum_probs=93.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
++...++|||+|||+++++++|+++|++||.|..+.++++ +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4567789999999999999999999999999999999865 5569999999999999999998 59999999999999
Q ss_pred CCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhcccc
Q psy630 83 PSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQA 127 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v 127 (347)
++.+.... ++++....++++.++|+.||.-
T Consensus 81 ~a~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 81 YYNANRAF---------------QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp ECCHHHHT---------------TTSCHHHHHHHHHHHHHHHCCC
T ss_pred EecCChhh---------------hhhhHhHhHHHHHHHHHHhCCC
Confidence 98765431 5677788899999999999953
No 63
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.76 E-value=1.2e-18 Score=154.57 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=89.8
Q ss_pred ccCCCCCcHHHHHHcC---ChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 250 QLDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~---~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
..+..|.|+||+|+.. +...++++|++ .|+++|.+|..|+||||+|+..|+.+++++||+ +|++++.+|..|.||
T Consensus 164 ~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tp 241 (278)
T 1dcq_A 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETP 241 (278)
T ss_dssp SCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred ccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCH
Confidence 3467799999999887 77889999988 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 242 L~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 242 LDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999886
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.76 E-value=3.4e-18 Score=139.99 Aligned_cols=98 Identities=30% Similarity=0.309 Sum_probs=84.5
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..+.++||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 72 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 149 (169)
T 2y1l_E 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTA 149 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 466777888888988888888888888888 788888888889999999999999999999988 699998888889999
Q ss_pred HHHHHHcCCHHHHHHHHhCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~G 346 (347)
||+|+..|+.+++++|++.|
T Consensus 150 l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 150 FDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999988876
No 65
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=127.90 Aligned_cols=86 Identities=17% Similarity=0.391 Sum_probs=79.8
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCee-EEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcc--
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIM-NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR-- 78 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~-- 78 (347)
......++|||+|||+++++++|+++|++||.|. .+++++++.++.++|||||+|.+.++|++|+.. ++..+.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4566789999999999999999999999999999 999999999999999999999999999999985 999999999
Q ss_pred --ccccCCCccc
Q psy630 79 --LSIQPSDSHN 88 (347)
Q Consensus 79 --l~v~~~~~~~ 88 (347)
|+|.++.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999887643
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.6e-18 Score=125.28 Aligned_cols=81 Identities=26% Similarity=0.603 Sum_probs=76.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
+.++|||+|||+++++++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|+.+++..+.|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999999999999999999899999999999999999999996699999999999998865
Q ss_pred c
Q psy630 87 H 87 (347)
Q Consensus 87 ~ 87 (347)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=127.84 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=77.2
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN--------ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHV 73 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~ 73 (347)
..+...++|||+|||+++++++|+++|++||.|.. +++++++.+|+++|||||+|.+.++|++|++. ++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45677889999999999999999999999999999 99999999999999999999999999999984 9999
Q ss_pred cCCccccccCC
Q psy630 74 LEGSRLSIQPS 84 (347)
Q Consensus 74 ~~g~~l~v~~~ 84 (347)
+.|+.|+|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999876
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=126.73 Aligned_cols=85 Identities=26% Similarity=0.532 Sum_probs=79.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
+...++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999998 499999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 877654
No 69
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=131.52 Aligned_cols=87 Identities=21% Similarity=0.452 Sum_probs=81.0
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C------CCccC
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D------SHVLE 75 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~------~~~~~ 75 (347)
+.+...++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+.. + +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4456788999999999999999999999999999999999999999999999999999999999985 8 99999
Q ss_pred CccccccCCCcccc
Q psy630 76 GSRLSIQPSDSHNR 89 (347)
Q Consensus 76 g~~l~v~~~~~~~~ 89 (347)
|+.|.|.++.++..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987654
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=127.03 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=78.5
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
.++...++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999985 999999999999
Q ss_pred cCCCc
Q psy630 82 QPSDS 86 (347)
Q Consensus 82 ~~~~~ 86 (347)
.++.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98864
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.76 E-value=3e-18 Score=137.85 Aligned_cols=94 Identities=26% Similarity=0.337 Sum_probs=62.3
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 59 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~ 136 (153)
T 1awc_B 59 SRDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTA 136 (153)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCHHHHHHHcChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCH
Confidence 345556666666666666666666666666 566666666666666666666666666666666 466666666666666
Q ss_pred HHHHHHcCCHHHHHHH
Q psy630 327 LDYAKAIEHTDLIEYL 342 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~L 342 (347)
||+|+..|+.+++++|
T Consensus 137 l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 137 FDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 6666666666666665
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=129.24 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=77.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|+.. ++..+.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999985 999999999999988
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7643
No 73
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=4.1e-19 Score=132.49 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=77.9
Q ss_pred cCCCeEEEeCCCC------CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC-c
Q psy630 6 RQLNKIFVGNLPW------TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG-S 77 (347)
Q Consensus 6 ~~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-~ 77 (347)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|+.. |+..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457899999999 999999999999999999999999999999999999999999999999974 9999999 9
Q ss_pred cccccCCCcccc
Q psy630 78 RLSIQPSDSHNR 89 (347)
Q Consensus 78 ~l~v~~~~~~~~ 89 (347)
.|.|.++.++.+
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999876543
No 74
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=129.44 Aligned_cols=86 Identities=29% Similarity=0.467 Sum_probs=80.2
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456678999999999999999999999999999999999998999999999999999999999984 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9877654
No 75
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=129.93 Aligned_cols=87 Identities=23% Similarity=0.459 Sum_probs=80.5
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v 81 (347)
+...+.++|||+|||+++++++|+++|++||.|..+.|++++.++.++|||||+|.+.++|++|+. +++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999999 4999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99877543
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.8e-18 Score=127.00 Aligned_cols=82 Identities=23% Similarity=0.475 Sum_probs=77.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
.++|||+|||+++++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999975 99999999999999987
Q ss_pred ccc
Q psy630 87 HNR 89 (347)
Q Consensus 87 ~~~ 89 (347)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=127.14 Aligned_cols=86 Identities=27% Similarity=0.463 Sum_probs=79.4
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhc-cCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCc-cCCccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSE-YGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHV-LEGSRL 79 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g~~l 79 (347)
+++...++|||+|||+++++++|+++|++ ||.|..|+|++++ +|.++|||||+|.+.++|.+|+. +++.. +.|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567789999999999999999999999 9999999999998 89999999999999999999998 49999 999999
Q ss_pred cccCCCcccc
Q psy630 80 SIQPSDSHNR 89 (347)
Q Consensus 80 ~v~~~~~~~~ 89 (347)
.|.++.++..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999877654
No 78
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.76 E-value=4.4e-18 Score=139.56 Aligned_cols=100 Identities=26% Similarity=0.313 Sum_probs=86.9
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..+.++||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t 137 (172)
T 3v30_A 60 ADPHILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYT 137 (172)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred CCchhhcccCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCC
Confidence 3567778888899999888888888888888 788889888899999999999999999999998 69999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++|+
T Consensus 138 ~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 138 PMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHH
Confidence 9999999999999999888763
No 79
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.75 E-value=1.8e-18 Score=136.50 Aligned_cols=94 Identities=32% Similarity=0.375 Sum_probs=87.5
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
...+.+++|+|+..+..+++++|++ .+++++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHH
Confidence 3567799999988888888898888 799999999999999999999999999999999 79999999999999999999
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..|+.+++++|+++||
T Consensus 89 ~~~~~~~v~~Ll~~g~ 104 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGA 104 (136)
T ss_dssp HHTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 9999999999999986
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=4.2e-18 Score=127.79 Aligned_cols=84 Identities=21% Similarity=0.473 Sum_probs=78.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
....++|||+|||+++++++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|+.+++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 45668999999999999999999999997 99999999999999999999999999999999966999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 77654
No 81
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.75 E-value=5.9e-18 Score=138.08 Aligned_cols=98 Identities=24% Similarity=0.302 Sum_probs=66.2
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..+.+++|+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 61 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 138 (167)
T 3v31_A 61 DPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNS 138 (167)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 445556666677776666666666666666 566666666677777777777777777777776 577777777777777
Q ss_pred HHHHHHcCCHHHHHHHHhCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~G 346 (347)
||+|+..|+.+++++|++++
T Consensus 139 l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 139 MDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHH
Confidence 77777777777777766654
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=127.14 Aligned_cols=84 Identities=18% Similarity=0.432 Sum_probs=78.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++++++|+++|++||.|..++++.++ +|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 899999999999999999999975 99999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 887653
No 83
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=152.25 Aligned_cols=99 Identities=24% Similarity=0.330 Sum_probs=83.1
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.++++.|+..+...++++|++ .++++|.+|..|+||||+||..|+.+++++||+ .|+++|.+|..|+||
T Consensus 111 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~ 188 (269)
T 4b93_B 111 NAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTA 188 (269)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBH
T ss_pred CcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcH
Confidence 456667778888888888888888888887 788888888888888888888888888888888 688888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.++|++||++||
T Consensus 189 Lh~A~~~g~~~~v~~Ll~~Ga 209 (269)
T 4b93_B 189 LHEAVIEKHVFVVELLLLHGA 209 (269)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHCCC
Confidence 888888888888888888886
No 84
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=129.08 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=79.6
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999998 599999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 887654
No 85
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.75 E-value=2.6e-18 Score=139.38 Aligned_cols=98 Identities=24% Similarity=0.358 Sum_probs=91.0
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..+.|+||+|+. +..+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 106 (162)
T 1ihb_A 30 NVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLP 106 (162)
T ss_dssp CTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 456667889999999999 77778888888 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++|+
T Consensus 107 L~~A~~~~~~~~v~~Ll~~g~ 127 (162)
T 1ihb_A 107 LHLAAKEGHLRVVEFLVKHTA 127 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHccC
Confidence 999999999999999999885
No 86
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=4e-18 Score=130.55 Aligned_cols=84 Identities=29% Similarity=0.520 Sum_probs=78.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|+.. ++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999999998999999999999999999999975 999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87654
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=127.03 Aligned_cols=85 Identities=33% Similarity=0.645 Sum_probs=78.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
.....++|||+|||+++++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|.+|+. +++.+.|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999998 47899999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 88
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=2.7e-18 Score=130.42 Aligned_cols=94 Identities=31% Similarity=0.363 Sum_probs=83.6
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
.....+..+.++||+|+..+...++++|+. .+++++.+|..|.||||+||..|+.+++++|++ +|++++.+|..|+||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTA 93 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcH
Confidence 355677889999999988888888898888 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q psy630 327 LDYAKAIEHTDLIEYL 342 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~L 342 (347)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 89
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=4.8e-18 Score=130.13 Aligned_cols=86 Identities=28% Similarity=0.476 Sum_probs=80.0
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
+..+.++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999998 49999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9887654
No 90
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=129.11 Aligned_cols=87 Identities=29% Similarity=0.582 Sum_probs=79.9
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
....+.++|||+|||+++++++|+++|++||.|..+++++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456778999999999999999999999999999999999998999999999999999999999975 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 98876543
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=4.4e-18 Score=132.86 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=79.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
++...++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456678999999999999999999999999999999999999999999999999999999999985 9999999999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987754
No 92
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.75 E-value=5.9e-18 Score=141.44 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=78.2
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 93 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~ 170 (192)
T 2rfm_A 93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTA 170 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBH
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCH
Confidence 466677778888888877777777777777 678888888888888888888888888888887 688888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~G 346 (347)
||+|+..|+.+++++|+++|
T Consensus 171 l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHhcc
Confidence 88888888888888887764
No 93
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=127.46 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=78.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNA-SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
...++|||+|||+++++++|+++|++||.|..+ +|++++.++.++|||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 999998899999999999999999999999 599999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 877654
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=126.23 Aligned_cols=84 Identities=29% Similarity=0.548 Sum_probs=77.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCC---CCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKN---TGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
.+.++|||+|||+++++++|+++|++||.|..|.+++++. |+.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999999876 679999999999999999999995 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99877554
No 95
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1.2e-18 Score=122.82 Aligned_cols=75 Identities=28% Similarity=0.573 Sum_probs=71.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
+|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999998754
No 96
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=128.23 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=75.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
.+...++|||+|||+++|+++|+++|++|| +..|+|++++ +|+++|||||+|.+.++|++|+..++..+.||.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 456678999999999999999999999999 4599999998 89999999999999999999998899999999999987
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76543
No 97
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=124.42 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=76.4
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
+...++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. |+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999999999999999999999999999985 99999999999987
Q ss_pred CCc
Q psy630 84 SDS 86 (347)
Q Consensus 84 ~~~ 86 (347)
+.+
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 98
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=137.03 Aligned_cols=82 Identities=21% Similarity=0.512 Sum_probs=76.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYG--QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
..++|||+|||+++++++|+++|++|| .|..|+|++|+.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999986 99999999999999
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 87643
No 99
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=125.81 Aligned_cols=81 Identities=27% Similarity=0.551 Sum_probs=76.0
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.+...++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 59999999999998
Q ss_pred CC
Q psy630 83 PS 84 (347)
Q Consensus 83 ~~ 84 (347)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 100
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=127.63 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=76.4
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN-ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~-~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 81 (347)
++....++|||+|||+++++++|+++|++||.|.. |+|+.+ .+|+++|||||+|.+.++|++|+..++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34456789999999999999999999999999987 888888 6899999999999999999999999999999999999
Q ss_pred cCCCcc
Q psy630 82 QPSDSH 87 (347)
Q Consensus 82 ~~~~~~ 87 (347)
.++.+.
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 877553
No 101
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=131.63 Aligned_cols=84 Identities=26% Similarity=0.610 Sum_probs=79.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~ 85 (347)
...++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..++..+.|+.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34589999999999999999999999999999999999999999999999999999999999989999999999999998
Q ss_pred cccc
Q psy630 86 SHNR 89 (347)
Q Consensus 86 ~~~~ 89 (347)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 102
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=125.95 Aligned_cols=84 Identities=30% Similarity=0.520 Sum_probs=78.0
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
...+.++|||+|||+++++++|+++|++||.|..|.++++ ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457789999999999999999999999999999999998 799999999999999999999985 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9887654
No 103
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.74 E-value=1.2e-17 Score=136.78 Aligned_cols=99 Identities=29% Similarity=0.403 Sum_probs=92.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.++||+|+..+..+++++|++ .+++++..|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~ 116 (169)
T 2y1l_E 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTP 116 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCH
Confidence 345566788999999999999999999998 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 117 L~~A~~~~~~~~v~~Ll~~g~ 137 (169)
T 2y1l_E 117 LHLAAMFGHLEIVEVLLKNGA 137 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999986
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=128.35 Aligned_cols=82 Identities=24% Similarity=0.473 Sum_probs=74.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeC-CCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDK-NTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~-~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++|| |..|+|++++ .+|+++|||||+|.+.++|.+|+.+++..+.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45678999999999999999999999999 9999999998 689999999999999999999996699999999999998
Q ss_pred CCcc
Q psy630 84 SDSH 87 (347)
Q Consensus 84 ~~~~ 87 (347)
+.++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 105
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.74 E-value=6.5e-18 Score=138.54 Aligned_cols=98 Identities=23% Similarity=0.233 Sum_probs=92.3
Q ss_pred CcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 248 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.+..+..|.|+||+|+..+..+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L 106 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPL 106 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhcccCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHH
Confidence 45567789999999999999999999998 799999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 107 ~~A~~~~~~~~v~~Ll~~ga 126 (172)
T 3v30_A 107 LYAVRGNHVKCVEALLARGA 126 (172)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999986
No 106
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=129.07 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=79.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999975 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9877654
No 107
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=4.5e-18 Score=128.32 Aligned_cols=86 Identities=29% Similarity=0.566 Sum_probs=79.0
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc---CCccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL---EGSRL 79 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l 79 (347)
.....++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+.. ++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999999999999999999999999999984 88887 88999
Q ss_pred cccCCCcccc
Q psy630 80 SIQPSDSHNR 89 (347)
Q Consensus 80 ~v~~~~~~~~ 89 (347)
.|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999877654
No 108
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=9.4e-18 Score=123.88 Aligned_cols=82 Identities=27% Similarity=0.446 Sum_probs=75.9
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|++++++. ++++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345668999999999999999999999999999999999985 9999999999999999999998 49999999999999
Q ss_pred CCCc
Q psy630 83 PSDS 86 (347)
Q Consensus 83 ~~~~ 86 (347)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8754
No 109
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=128.03 Aligned_cols=85 Identities=29% Similarity=0.642 Sum_probs=79.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3456899999999999999999999999999999999999899999999999999999999997 599999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 887654
No 110
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.3e-17 Score=125.51 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=77.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC---ccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG---SRLSI 81 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---~~l~v 81 (347)
...++|||+|||+++++++|+++|++||.|..|+|++++ +|.++|||||+|.+.++|.+|+.. ++..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 799999999999999999999985 9999988 99999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99887654
No 111
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=125.42 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=72.1
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C--CCccCCcccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D--SHVLEGSRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~l~ 80 (347)
++...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|++. + +..+.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 5677899999999999999999999999999999999864 68999999999999999983 3 5789999999
Q ss_pred ccCCCcccc
Q psy630 81 IQPSDSHNR 89 (347)
Q Consensus 81 v~~~~~~~~ 89 (347)
|.++.++..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999977543
No 112
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.73 E-value=3.6e-18 Score=139.09 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=91.5
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+..+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.|
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t 143 (165)
T 3twr_A 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNT 143 (165)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred CCCCccCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCC
Confidence 3567778899999999999999999999999 899999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+. ++.+++++|+++||
T Consensus 144 ~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 144 PLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TGGGSCT-TCHHHHHHHHTC--
T ss_pred hhHhHhc-CChHHHHHHhhccc
Confidence 9999877 99999999999997
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=5.7e-18 Score=128.64 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=78.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~ 84 (347)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 455789999999999999999999999999999999999999999999999999999999998 4999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 76543
No 114
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.73 E-value=1.4e-17 Score=134.28 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=90.7
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+...++++|++ .|++++.+|..|.||||+|+..|+.+++++|++ . ++++.+|..|.|
T Consensus 59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t 135 (156)
T 1bd8_A 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLT 135 (156)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCC
Confidence 4567778899999999999999999999998 899999999999999999999999999999998 6 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhC
Q psy630 326 GLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~ 345 (347)
|||+|+..|+.+++++|+++
T Consensus 136 ~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 136 PLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999975
No 115
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=128.73 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=78.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4677899999999999999999999999999999999998 89999999999999999999998 499999999999998
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 116
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.73 E-value=1.2e-17 Score=147.59 Aligned_cols=100 Identities=20% Similarity=0.154 Sum_probs=93.5
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
.+.+..+..|.|+||+|+..+...++++|++ .|++++.++. .|+||||+|+..|+.+++++||+ +|++++.+|..|+
T Consensus 149 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~ 226 (282)
T 1oy3_D 149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGR 226 (282)
T ss_dssp GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSC
T ss_pred hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCC
Confidence 3467778899999999999999999999998 7999999986 49999999999999999999999 7999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||+|+..|+.+++++|+++||
T Consensus 227 tpL~~A~~~~~~~~v~~Ll~~ga 249 (282)
T 1oy3_D 227 TPLGSALLRPNPILARLLRAHGA 249 (282)
T ss_dssp CHHHHHHTSSCHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCcHHHHHHHHcCC
Confidence 99999999999999999999997
No 117
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=128.45 Aligned_cols=84 Identities=30% Similarity=0.648 Sum_probs=77.7
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|+.. ++ .+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999997 76 8999999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.+..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 986643
No 118
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.73 E-value=6.6e-18 Score=146.37 Aligned_cols=93 Identities=25% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHH
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKA 332 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~ 332 (347)
..+.++||.|+..+...++++|++ .++++|.+|..|+||||+||..|+.+++++|++ +|+++|.+|..|+||||+|+.
T Consensus 35 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~ 112 (239)
T 1ycs_B 35 PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAAS 112 (239)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHH
Confidence 455677777766666666666666 566777777777777777777777777777777 577777777777777777777
Q ss_pred cCCHHHHHHHHhCCC
Q psy630 333 IEHTDLIEYLVNSGS 347 (347)
Q Consensus 333 ~~~~~~v~~Ll~~GA 347 (347)
.|+.+++++|+++||
T Consensus 113 ~~~~~~v~~Ll~~ga 127 (239)
T 1ycs_B 113 CNNVQVCKFLVESGA 127 (239)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 777777777777765
No 119
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=126.44 Aligned_cols=86 Identities=31% Similarity=0.573 Sum_probs=79.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeee-CCCCCceeEEEEEEcCHHHHHHHHh-c-CCCccCCcccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFD-KNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~-~~t~~~~g~afV~f~~~~~a~~a~~-~-~~~~~~g~~l~ 80 (347)
.....++|||+|||+++++++|+++|++||.|..|+|+++ +.++.++|||||+|.+.++|.+|+. + ++..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 7889999999999999999999997 5 89999999999
Q ss_pred ccCCCcccc
Q psy630 81 IQPSDSHNR 89 (347)
Q Consensus 81 v~~~~~~~~ 89 (347)
|.++.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999887654
No 120
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.3e-17 Score=121.00 Aligned_cols=85 Identities=26% Similarity=0.490 Sum_probs=77.4
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
......++|||+|||+++++++|+++|++||.|..+.++++ ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567789999999999999999999999999999999984 799999999999999999999985 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.+...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99877543
No 121
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=9.8e-18 Score=132.90 Aligned_cols=87 Identities=25% Similarity=0.497 Sum_probs=80.8
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v 81 (347)
++....++|||+|||+++++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999998 4999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99877654
No 122
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-18 Score=121.60 Aligned_cols=75 Identities=35% Similarity=0.720 Sum_probs=71.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+.. + ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999999998999999999999999999999997 6 9999999999765
No 123
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=126.93 Aligned_cols=83 Identities=23% Similarity=0.469 Sum_probs=77.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCC-CCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t-~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++|| |..|.|++++.+ |+++|||||+|.+.++|++|+.+++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4567999999999999999999999999 999999999988 99999999999999999999966999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 124
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=123.24 Aligned_cols=82 Identities=22% Similarity=0.460 Sum_probs=75.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCC-ceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGL-SKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~-~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
..++|||+|||+++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 899999999999999999995 999999999999987
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 125
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.73 E-value=1.7e-17 Score=133.76 Aligned_cols=96 Identities=26% Similarity=0.316 Sum_probs=88.1
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+ +..+..+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 104 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 104 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCH
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcH
Confidence 455667889999999 76677778888888 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhC
Q psy630 327 LDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~ 345 (347)
||+|+..|+.+++++|+++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 105 IHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhChHHHHHHHHhc
Confidence 9999999999999999975
No 126
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=144.61 Aligned_cols=99 Identities=24% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC-CCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d-~~g~T 325 (347)
+++..+..|.|+||+|+..+..+++++|++ .|+++|.+|..|+||||+||..|+.+++++|++ .|++++.++ ..|+|
T Consensus 46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~t 123 (229)
T 2vge_A 46 DPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGAT 123 (229)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTCC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCC
Confidence 455566666666666666666666666666 566666666666667777666666666666666 566666665 46666
Q ss_pred HHHHH--HHcCCHHHHHHHHhCCC
Q psy630 326 GLDYA--KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A--~~~~~~~~v~~Ll~~GA 347 (347)
|||+| +..|+.+++++|+++||
T Consensus 124 pL~~A~a~~~~~~~~v~~Ll~~ga 147 (229)
T 2vge_A 124 AFEKCDPYREGYADCATYLADVEQ 147 (229)
T ss_dssp TGGGCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHcCC
Confidence 77666 66666666666666553
No 127
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=4e-18 Score=133.72 Aligned_cols=84 Identities=15% Similarity=0.315 Sum_probs=78.0
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQ---IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 79 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 79 (347)
+...+.++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++|+.+++..+.||.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 45567789999999999999999999999999 88999999987 999999999999999999999999999999999
Q ss_pred cccCCCcc
Q psy630 80 SIQPSDSH 87 (347)
Q Consensus 80 ~v~~~~~~ 87 (347)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99888653
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2.6e-18 Score=125.62 Aligned_cols=81 Identities=27% Similarity=0.673 Sum_probs=72.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.+ |.+|+.. ++..+.|+.|.|.++.+
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 368999999999999999999999999999999999999999999999999999 9999985 99999999999999877
Q ss_pred ccc
Q psy630 87 HNR 89 (347)
Q Consensus 87 ~~~ 89 (347)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 129
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=9.8e-18 Score=160.86 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=89.3
Q ss_pred CCCCCcHHHHHHc---CChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy630 252 DDNEKNIYEWAKE---GKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 328 (347)
Q Consensus 252 ~~~~~~~l~~a~~---~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh 328 (347)
+..|.|+||+|+. .+...++++|++ .|+++|.+|..|+||||+||..|+.+++++||+ +||+++.+|..|+||||
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpl~ 245 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALD 245 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHH-TCCCCSCCCTTCCCHHH
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHH
Confidence 6789999999965 788889999998 799999999999999999999999999999999 79999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCC
Q psy630 329 YAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+..|+.+++++|+++||
T Consensus 246 ~A~~~~~~~~~~~Ll~~ga 264 (497)
T 3lvq_E 246 IARKKHHKECEELLEQAQA 264 (497)
T ss_dssp HHHHTTCHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHhCC
Confidence 9999999999999999997
No 130
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-18 Score=131.15 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=78.2
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQI-MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
.+.+.++|||+|||+++|+++|+++|++||.| ..|+|++++ +|+++|||||+|.+.++|++|+..++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 35667899999999999999999999999999 889999998 8999999999999999999999999999999999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887654
No 131
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=127.93 Aligned_cols=86 Identities=22% Similarity=0.369 Sum_probs=79.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIM--------NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
+..+.++|||+|||+++++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|+.. ++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 699999988999999999999999999999985 99999
Q ss_pred CCccccccCCCcccc
Q psy630 75 EGSRLSIQPSDSHNR 89 (347)
Q Consensus 75 ~g~~l~v~~~~~~~~ 89 (347)
.|+.|.|.++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999887654
No 132
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.72 E-value=6.7e-18 Score=140.19 Aligned_cols=95 Identities=26% Similarity=0.342 Sum_probs=86.0
Q ss_pred ccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC-CCCCcHHH
Q psy630 250 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGLD 328 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d-~~g~TpLh 328 (347)
..+..|.|+||+|+..+...++++|+. +.+++.+|..|+||||+||..|+.+++++|++ +|+++|.+| ..|+||||
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHH
Confidence 345678899999998888888888888 88999999999999999999999999999998 799999998 88999999
Q ss_pred HHHHcCCHHHHHHHHhCCC
Q psy630 329 YAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+..|+.+++++|+++||
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga 134 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGA 134 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTC
T ss_pred HHHhcCcHHHHHHHHHcCC
Confidence 9999999999999999886
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.8e-18 Score=125.03 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=74.4
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+.. ++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34457999999999999999999999999999999999999999999999999999999999985 99999999999988
Q ss_pred CCc
Q psy630 84 SDS 86 (347)
Q Consensus 84 ~~~ 86 (347)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 754
No 134
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=121.85 Aligned_cols=84 Identities=17% Similarity=0.341 Sum_probs=77.6
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
+.....++|||+|||+++++++|+++|++| .|..++++++ .+|+++|||||+|.+.++|.+|+.+++..+.|+.|.|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEE
Confidence 345667899999999999999999999999 8999999999 68999999999999999999999999999999999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 887653
No 135
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=9.2e-18 Score=129.16 Aligned_cols=80 Identities=29% Similarity=0.505 Sum_probs=75.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|++|+. +++..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4556899999999999999999999999999999999999899999999999999999999998 499999999999987
Q ss_pred C
Q psy630 84 S 84 (347)
Q Consensus 84 ~ 84 (347)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 136
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-18 Score=132.39 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=77.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSD 85 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~ 85 (347)
...++|||+|||+++++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|++|+.+++..+.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 44579999999999999999999999999999999999999999999999999999999999659999999999999876
Q ss_pred ccc
Q psy630 86 SHN 88 (347)
Q Consensus 86 ~~~ 88 (347)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 644
No 137
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.72 E-value=8.4e-18 Score=143.86 Aligned_cols=95 Identities=23% Similarity=0.355 Sum_probs=67.1
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhc-CCCccccCCCCCcHHHH
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC-GADVNVTDSDGDYGLDY 329 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~-ga~i~~~d~~g~TpLh~ 329 (347)
.+..+.|+||+|+..+...++++|++ .+++++.+|..|+||||+||..|+.+++++||+ . |++++.+|..|+||||+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT-QPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTT-STTCCCCCCCTTSCCHHHH
T ss_pred cccccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHc-CCCCCccccCCCCCCHHHH
Confidence 34556677777666666666666666 567777777777777777777777777777776 4 77777777777777777
Q ss_pred HHHcCCHHHHHHHHhCCC
Q psy630 330 AKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 330 A~~~~~~~~v~~Ll~~GA 347 (347)
|+..|+.+++++|+++||
T Consensus 147 A~~~~~~~~v~~Ll~~ga 164 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGA 164 (222)
T ss_dssp HHHHTCHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 777777777777777665
No 138
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.7e-17 Score=125.30 Aligned_cols=81 Identities=28% Similarity=0.501 Sum_probs=75.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+.+++++|+++|++||.|..+.+++++ +|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999995 9999999999998
Q ss_pred CCC
Q psy630 83 PSD 85 (347)
Q Consensus 83 ~~~ 85 (347)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=133.69 Aligned_cols=83 Identities=17% Similarity=0.368 Sum_probs=76.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE--EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCC----ccCCcc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN--ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSH----VLEGSR 78 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~----~~~g~~ 78 (347)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+.. ++. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45679999999999999999999999999977 99999999999999999999999 99999985 998 999999
Q ss_pred ccccCCCcccc
Q psy630 79 LSIQPSDSHNR 89 (347)
Q Consensus 79 l~v~~~~~~~~ 89 (347)
|.|.++.++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999877543
No 140
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.8e-17 Score=128.67 Aligned_cols=82 Identities=24% Similarity=0.575 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
+.++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|+.+++..+.|+.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 45899999999999999999999999999999999999899999999999999999999996699999999999998866
Q ss_pred cc
Q psy630 87 HN 88 (347)
Q Consensus 87 ~~ 88 (347)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 141
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.72 E-value=2.7e-17 Score=132.28 Aligned_cols=94 Identities=23% Similarity=0.265 Sum_probs=89.3
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
+..|.|+||+|+..+..+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+
T Consensus 31 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~ 108 (153)
T 1awc_B 31 DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWAT 108 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH
Confidence 5678899999998888889999998 899999999999999999999999999999999 79999999999999999999
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..|+.+++++|+++||
T Consensus 109 ~~~~~~~v~~Ll~~ga 124 (153)
T 1awc_B 109 EHNHQEVVELLIKYGA 124 (153)
T ss_dssp HTTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 9999999999999986
No 142
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.72 E-value=1.9e-17 Score=138.27 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=93.6
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 137 (192)
T 2rfm_A 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETP 137 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCH
T ss_pred ccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence 566677889999999999999999999998 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 138 L~~A~~~~~~~~v~~Ll~~ga 158 (192)
T 2rfm_A 138 LIVASKYGRSEIVKKLLELGA 158 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHCCC
Confidence 999999999999999999986
No 143
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=7.8e-18 Score=125.81 Aligned_cols=96 Identities=26% Similarity=0.384 Sum_probs=80.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~ 87 (347)
++|||+|||+++++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 689999999999999999985 999999999999988775
Q ss_pred cccchh---hhhhcccccccccCCc
Q psy630 88 NRMAEN---MEDRFNQACDYLPSLV 109 (347)
Q Consensus 88 ~~~~~~---~~~~f~~~~~~v~~l~ 109 (347)
...... ....-...++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 532211 1111224678999986
No 144
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=127.88 Aligned_cols=85 Identities=13% Similarity=0.347 Sum_probs=78.6
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQ---IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 78 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 78 (347)
+++....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|+.+++..+.|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345677889999999999999999999999988 89999999987 99999999999999999999999999999999
Q ss_pred ccccCCCcc
Q psy630 79 LSIQPSDSH 87 (347)
Q Consensus 79 l~v~~~~~~ 87 (347)
|.|.++.++
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988664
No 145
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=123.67 Aligned_cols=84 Identities=12% Similarity=0.178 Sum_probs=76.1
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELK----KFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
.+..+.++|||+|||+++++++|+ ++|++||.|..|+|++++.+ +|||||+|.+.++|++|+.. |+..+.|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 445667899999999999999999 99999999999999998765 88999999999999999984 99999999
Q ss_pred cccccCCCcccc
Q psy630 78 RLSIQPSDSHNR 89 (347)
Q Consensus 78 ~l~v~~~~~~~~ 89 (347)
.|+|.++.+...
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999876543
No 146
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=8.3e-18 Score=129.29 Aligned_cols=83 Identities=16% Similarity=0.352 Sum_probs=76.9
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQ---IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 80 (347)
...+.++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|+.+++..+.|+.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 4566789999999999999999999999999 89999999987 9999999999999999999999999999999999
Q ss_pred ccCCCcc
Q psy630 81 IQPSDSH 87 (347)
Q Consensus 81 v~~~~~~ 87 (347)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 147
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.72 E-value=2.8e-17 Score=127.04 Aligned_cols=92 Identities=34% Similarity=0.482 Sum_probs=86.2
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHc
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAI 333 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~ 333 (347)
.|.|+||.|+..+...++++|++ .+.+++..|..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHc
Confidence 47899999988888888888888 689999999999999999999999999999999 7999999999999999999999
Q ss_pred CCHHHHHHHHhCCC
Q psy630 334 EHTDLIEYLVNSGS 347 (347)
Q Consensus 334 ~~~~~v~~Ll~~GA 347 (347)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~g~ 92 (126)
T 1n0r_A 79 GHLEVVKLLLEAGA 92 (126)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHcCC
Confidence 99999999999985
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=6.3e-18 Score=126.59 Aligned_cols=85 Identities=29% Similarity=0.621 Sum_probs=77.5
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
+.....++|||+|||+++++++|+++|++||.|..+++++++ +|.++|||||+|.+.++|++|+. ++..++|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 445566899999999999999999999999999999999998 89999999999999999999999 9999999999998
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 8766543
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.1e-17 Score=129.25 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=74.7
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCee--EEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIM--NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLS 80 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 80 (347)
..+.+.++|||+|||+++|+++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|++|+..++..+.||.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 345667899999999999999999999999 577 899999987 9999999999999999999999888999999999
Q ss_pred ccCCCc
Q psy630 81 IQPSDS 86 (347)
Q Consensus 81 v~~~~~ 86 (347)
|.++.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987754
No 150
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=122.79 Aligned_cols=85 Identities=27% Similarity=0.629 Sum_probs=77.2
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+.....++|||+|||+++++++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456778999999999999999999999999999999998864 3899999999999999999985 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99887654
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=125.45 Aligned_cols=85 Identities=14% Similarity=0.267 Sum_probs=77.7
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEe-eeCCCCCceeEEEEEEcCHHHHHHHHhc-C--CCccCCccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQ-IMNASVM-FDKNTGLSKGFGFVTFQNKEAVDKVFST-D--SHVLEGSRL 79 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~~~i~-~~~~t~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~l 79 (347)
..+.++|||+|||+++++++|+++|++||. |..+.++ .++.+|.++|||||+|.+.++|.+|+.. + +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 8888899999999999999999999985 5 589999999
Q ss_pred cccCCCcccc
Q psy630 80 SIQPSDSHNR 89 (347)
Q Consensus 80 ~v~~~~~~~~ 89 (347)
.|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 152
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.6e-18 Score=124.59 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=76.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+. +++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3455789999999999999999999999999999999999999999999999999999999996 599999999999998
Q ss_pred CCcc
Q psy630 84 SDSH 87 (347)
Q Consensus 84 ~~~~ 87 (347)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7653
No 153
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.71 E-value=1.1e-17 Score=145.57 Aligned_cols=96 Identities=26% Similarity=0.342 Sum_probs=88.7
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC-CCCCcHH
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD-SDGDYGL 327 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d-~~g~TpL 327 (347)
...+..|.|+||+|+..+...++++|+. ++++|.+|..|+||||+||..|+.+++++|++ +|+++|.++ ..|+|||
T Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 39 ADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSCCCHH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCCCCCCCHH
Confidence 3344678899999999999999999988 88999999999999999999999999999999 799999998 7899999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 116 ~~A~~~g~~~~v~~Ll~~ga 135 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVELGA 135 (244)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHCCC
Confidence 99999999999999999986
No 154
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=123.42 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=76.3
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 456678999999999999999999999999999999999864 378999999999999999998 59999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9887554
No 155
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=117.74 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=66.7
Q ss_pred CeEEEeCCCCCC------CHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCc-ccc
Q psy630 9 NKIFVGNLPWTV------SHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS-RLS 80 (347)
Q Consensus 9 ~~l~V~nLp~~~------t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~-~l~ 80 (347)
++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|.+|+.. |+..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 45799999999999999999999985 99999999 888
Q ss_pred cc
Q psy630 81 IQ 82 (347)
Q Consensus 81 v~ 82 (347)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 73
No 156
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.71 E-value=7.4e-18 Score=136.14 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=86.5
Q ss_pred ccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc-HHH
Q psy630 250 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLD 328 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T-pLh 328 (347)
..+..+.++||+|+..+...++++|++ .+++++.+|..|+||||+|+ .|+.+++++|++ .|++++.+|..|+| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHH
Confidence 345678899999998888889999888 79999999999999999996 999999999999 79999999999999 999
Q ss_pred HHHHcCCHHHHHHHHhCCC
Q psy630 329 YAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+..|+.+++++|+++||
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga 102 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGA 102 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHcCC
Confidence 9999999999999999886
No 157
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=144.70 Aligned_cols=102 Identities=25% Similarity=0.289 Sum_probs=96.2
Q ss_pred cccCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCC
Q psy630 244 MINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 323 (347)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g 323 (347)
...+++..+..|.||||+|+..+..+++++|+. .+++++.++..|.||||+|+..++.+++++|++ .|+++|.+|..|
T Consensus 75 ~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g 152 (269)
T 4b93_B 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSG 152 (269)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTC
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCC
Confidence 334678889999999999999999999999998 899999999999999999999999999999999 799999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 324 DYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 324 ~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+||||+|+..|+.++|++||++||
T Consensus 153 ~TpL~~A~~~g~~~~v~~Ll~~ga 176 (269)
T 4b93_B 153 NTPLIYACSGGHHELVALLLQHGA 176 (269)
T ss_dssp CCHHHHHHHTTCGGGHHHHHHTTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCC
Confidence 999999999999999999999986
No 158
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=144.67 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=92.4
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
..+..+..|.|+||+|+..+..+++++|++ .|+++|.+|..|+||||+||..|+.+++++||+..|++++.+|..|+||
T Consensus 175 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~Tp 253 (276)
T 4hbd_A 175 INAKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253 (276)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCH
Confidence 455667789999999999999999999999 8999999999999999999999999999999984599999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~G 346 (347)
||+|+..|+.+++++|++++
T Consensus 254 L~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 254 LMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHhcc
Confidence 99999999999999999875
No 159
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.71 E-value=1.8e-17 Score=135.18 Aligned_cols=99 Identities=26% Similarity=0.386 Sum_probs=93.3
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+..+++++|++ .+++++..|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 105 (167)
T 3v31_A 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTP 105 (167)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCH
T ss_pred CcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCcCCCCCCCH
Confidence 356667889999999999999999999999 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 106 L~~A~~~~~~~~v~~Ll~~g~ 126 (167)
T 3v31_A 106 LLYAVHGNHVKCVKMLLESGA 126 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999986
No 160
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1.4e-17 Score=131.03 Aligned_cols=86 Identities=27% Similarity=0.522 Sum_probs=79.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
+..+.++|||+|||+++++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455678999999999999999999999999999999999998999999999999999999999985 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.+...
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9877543
No 161
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.70 E-value=6.1e-17 Score=138.24 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=94.1
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..+.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.|
T Consensus 116 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t 193 (223)
T 2f8y_A 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRL 193 (223)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCC
T ss_pred CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCC
Confidence 3566777889999999999999999999999 799999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..++.+++++|+++||
T Consensus 194 ~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 194 PRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhcchHHHHHHHHcCC
Confidence 9999999999999999999986
No 162
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=148.40 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred cCCCCCcHHHHHHcC---ChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 251 LDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~---~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.+..|.|+||+|+.. +...++++|++ .|+++|.+|..|+||||+|+..|+.+++++||+ +|++++.+|..|.|||
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL 263 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETAL 263 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHH
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHH
Confidence 467889999999975 67788898888 699999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 264 ~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 264 DIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 99999999999999998874
No 163
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.70 E-value=3.4e-17 Score=143.02 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=83.7
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+...++++|++ .|++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.|
T Consensus 148 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t 225 (253)
T 1yyh_A 148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRL 225 (253)
T ss_dssp CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCC
Confidence 4567778888899988888888888888888 788888888889999999999999999999998 69999988889999
Q ss_pred HHHHHHHcCCHHHHHHHHhC
Q psy630 326 GLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~ 345 (347)
|||+|+..|+.+++++|...
T Consensus 226 pl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999888753
No 164
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=2.6e-17 Score=128.12 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=78.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456799999999999999999999999999999999999899999999999999999999997 499999999999998
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 876543
No 165
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-18 Score=130.19 Aligned_cols=84 Identities=14% Similarity=0.316 Sum_probs=76.8
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
....++|||+|||+++|+++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|+.+++..+.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34568999999999999999999999999999877777778999999999999999999999999999999999999988
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6643
No 166
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-17 Score=123.37 Aligned_cols=83 Identities=28% Similarity=0.444 Sum_probs=76.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|.|++++ +++++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999998 599999999999999999999984 9999999999999
Q ss_pred CCCcc
Q psy630 83 PSDSH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 87653
No 167
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.70 E-value=7.9e-17 Score=137.93 Aligned_cols=99 Identities=25% Similarity=0.207 Sum_probs=92.2
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcC-CCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~g-a~i~~~d~~g~T 325 (347)
+.+..+..|.++||+|+..+...++++|++ .|++++.+|..|.||||+|+..|+.+++++|++ .| ++++.+|..|+|
T Consensus 99 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~g~t 176 (228)
T 2dzn_A 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWT 176 (228)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT-TTCCCSCCCCTTSCC
T ss_pred ccccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-cCcccccCcCCCCCC
Confidence 456667889999999999999999999998 799999999999999999999999999999999 68 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHH-hCCC
Q psy630 326 GLDYAKAIEHTDLIEYLV-NSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll-~~GA 347 (347)
|||+|+..|+.+++++|+ ++||
T Consensus 177 ~L~~A~~~~~~~~v~~Ll~~~ga 199 (228)
T 2dzn_A 177 PLFHALAEGHGDAAVLLVEKYGA 199 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999 7776
No 168
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.70 E-value=9.6e-18 Score=144.50 Aligned_cols=96 Identities=28% Similarity=0.231 Sum_probs=88.4
Q ss_pred ccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHH
Q psy630 250 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDY 329 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~ 329 (347)
..+..+.++||+|+..+..+++++|++ .+++++.+|..|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpLh~ 93 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSHGWTPLHC 93 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHH
Confidence 345667788999888888888888887 799999999999999999999999999999999 799999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCC
Q psy630 330 AKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 330 A~~~~~~~~v~~Ll~~GA 347 (347)
|+..|+.+++++|+++||
T Consensus 94 A~~~g~~~~v~~Ll~~ga 111 (229)
T 2vge_A 94 AASCNDTVICMALVQHGA 111 (229)
T ss_dssp HHHTTCHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcCC
Confidence 999999999999999986
No 169
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.70 E-value=1.6e-17 Score=137.22 Aligned_cols=100 Identities=25% Similarity=0.301 Sum_probs=94.7
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.|
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t 140 (179)
T 3f6q_A 63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEM 140 (179)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCC
Confidence 3567778889999999999999999999999 799999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..++.+++++|+++||
T Consensus 141 pl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 141 PVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp GGGGSCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999986
No 170
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=124.32 Aligned_cols=82 Identities=28% Similarity=0.664 Sum_probs=75.2
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..+++++++ +.++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999886 45899999999999999999985 9999999999999
Q ss_pred CCCcc
Q psy630 83 PSDSH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 88764
No 171
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=7.4e-17 Score=130.41 Aligned_cols=85 Identities=18% Similarity=0.370 Sum_probs=79.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++|+.. ++..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999984 99999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 876443
No 172
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.69 E-value=2.6e-17 Score=142.05 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=91.3
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
+..+..|.++||+|+..+...++++|++ .|++++.++. .|.||||+|+..|+.+++++|++ +|++++.+|..|.|||
T Consensus 111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl 188 (236)
T 1ikn_D 111 KATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPY 188 (236)
T ss_dssp GCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGG
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHH
Confidence 4456788999999999999999999998 7999999998 99999999999999999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 189 ~~A~~~~~~~~~~~Ll~~ga 208 (236)
T 1ikn_D 189 QLTWGRPSTRIQQQLGQLTL 208 (236)
T ss_dssp GGCTTSSCHHHHHHHHTTSC
T ss_pred HHHHccCchHHHHHHHHcch
Confidence 99999999999999999997
No 173
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-18 Score=127.37 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=76.7
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
....++|||+|||+++++++|+++|++||.|.. .++.++.+|.++|||||+|.+.++|.+|+++++..+.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346789999999999999999999999999988 6777777899999999999999999999999999999999999999
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 174
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=129.54 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=75.3
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 59999999999997
Q ss_pred CC
Q psy630 83 PS 84 (347)
Q Consensus 83 ~~ 84 (347)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 175
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.69 E-value=9.8e-17 Score=137.69 Aligned_cols=98 Identities=22% Similarity=0.318 Sum_probs=69.0
Q ss_pred CcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 248 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.+..+..|.++||+|+..+..+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.|||
T Consensus 99 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L 176 (231)
T 3aji_A 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPL 176 (231)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHH
Confidence 44455666777777776666667776666 567777777777777777777777777777776 5777777777777777
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 177 ~~A~~~~~~~~v~~Ll~~ga 196 (231)
T 3aji_A 177 HLACDEERVEEAKFLVTQGA 196 (231)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHCCC
Confidence 77777777777777777665
No 176
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=125.83 Aligned_cols=77 Identities=16% Similarity=0.346 Sum_probs=72.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
.++|||+|||+++|+++|+++|++| .|..|+|++++. |+++|||||+|.+.++|++|+.+++..+.||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999986 9999999999999999999998899999999999987754
No 177
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.69 E-value=1.1e-16 Score=134.45 Aligned_cols=99 Identities=24% Similarity=0.211 Sum_probs=91.6
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC-----HHHHHHHHhhcCCCccccCC
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH-----LKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~~ga~i~~~d~ 321 (347)
+.+..+..+.+++|+|+..+...++++|++..+.+++.+|..|+||||+|+..+. .+++++|++ .|++++.+|.
T Consensus 98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~ 176 (201)
T 3hra_A 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDN 176 (201)
T ss_dssp CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCT
T ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCC
Confidence 4566778899999999999999999999984449999999999999999999998 999999999 7999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~G 346 (347)
.|.||||+|+..|+.+++++|+++|
T Consensus 177 ~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 177 SGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999999999999999999987
No 178
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.69 E-value=1.1e-16 Score=136.74 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=92.5
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..+.+++|+|+..+...++++|++ .+++++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 84 DLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETP 161 (223)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCH
T ss_pred CcccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcCH
Confidence 345566788999999999888889999998 899999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga 182 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFA 182 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999986
No 179
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=4.1e-17 Score=126.68 Aligned_cols=84 Identities=27% Similarity=0.457 Sum_probs=77.8
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|+|++++ +|+++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999998 89999999999999999999998 59999999999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.+..
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 887644
No 180
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=145.31 Aligned_cols=99 Identities=24% Similarity=0.278 Sum_probs=93.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .|++++.+|..|+||||+|+..|+.+++++|++ +|++++..|..|.||
T Consensus 50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTP 127 (351)
T ss_dssp TCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCH
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCH
Confidence 456677889999999999999999999999 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~ 148 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLLSHGA 148 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999986
No 181
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=122.72 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCCC------CHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCc-c
Q psy630 7 QLNKIFVGNLPWTV------SHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS-R 78 (347)
Q Consensus 7 ~~~~l~V~nLp~~~------t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~-~ 78 (347)
..++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+|+.. |+..+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35799999999999 789999999999999999998 45799999999999999999999985 99999998 9
Q ss_pred ccccCCCccc
Q psy630 79 LSIQPSDSHN 88 (347)
Q Consensus 79 l~v~~~~~~~ 88 (347)
|.|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987643
No 182
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=126.90 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=73.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCe----eEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQI----MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSI 81 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i----~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 81 (347)
.+.++|||+|||+++|+++|+++|++||.| ..|+|++++ +|+++|||||+|.+.++|++|+..++..+.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999975 689999985 899999999999999999999999999999999999
Q ss_pred cCCCc
Q psy630 82 QPSDS 86 (347)
Q Consensus 82 ~~~~~ 86 (347)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87754
No 183
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=3.9e-17 Score=115.80 Aligned_cols=73 Identities=12% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
....|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++. |+..+.|++|+|..|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999864 689999999999999999986 9999999999999883
No 184
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=122.45 Aligned_cols=81 Identities=21% Similarity=0.511 Sum_probs=72.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC--------
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-------- 75 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-------- 75 (347)
..+.++|||+|||+++++++|+++|++||.|..++|++++ ++.++|||||+|.+.++|.+|+.. |+..+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3466899999999999999999999999999999999998 899999999999999999999984 999984
Q ss_pred CccccccCCCc
Q psy630 76 GSRLSIQPSDS 86 (347)
Q Consensus 76 g~~l~v~~~~~ 86 (347)
+++|.|.++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 55566666654
No 185
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.69 E-value=5e-17 Score=143.61 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=90.0
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCC---ccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN---INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+..+..|.|+||+|+..+...++++|+. .+.+ ++.+|..|+||||+||..|+.+++++|++ +|++++.+|..|+|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence 4567899999999999999999999987 5666 88999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++|+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~ 102 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRP 102 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCC
T ss_pred HHHHHHHcCCcchhHhhhccCC
Confidence 9999999999999999999875
No 186
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.69 E-value=1.7e-17 Score=141.98 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=87.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|+...+++++.+|..|+||||+|+..|+.+++++||+ .|++++.+|..|.||
T Consensus 98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~ 176 (222)
T 3ehr_A 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLA 176 (222)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCH
Confidence 4566778899999999999999999999994499999999999999999999999999999999 699999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..++.++++.|+..||
T Consensus 177 l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 177 FDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHCCSHHHHHHHC-------
T ss_pred HHHhcchhHHHHHHHHhccch
Confidence 999999999999999998875
No 187
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=136.69 Aligned_cols=97 Identities=21% Similarity=0.190 Sum_probs=89.5
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCC-------------CCchHHHHHHHcCCHHHHHHHHhhcCCC
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDE-------------NGLNCLHWACDRGHLKVVQHLIEKCGAD 315 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~ga~ 315 (347)
+..+..|.|+||+|+..+..+++++|++ .+++++..+. .|.||||+|+..|+.+++++|++ .|++
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~ 146 (232)
T 2rfa_A 69 TSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGAD 146 (232)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCC
T ss_pred cccCCCCcCHHHHHHHcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCC
Confidence 4456789999999999999999999999 7999988765 79999999999999999999999 7999
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHH----HHHHhCCC
Q psy630 316 VNVTDSDGDYGLDYAKAIEHTDLI----EYLVNSGS 347 (347)
Q Consensus 316 i~~~d~~g~TpLh~A~~~~~~~~v----~~Ll~~GA 347 (347)
++.+|..|+||||+|+..|+.+++ ++|+++||
T Consensus 147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 999999999999999999999988 99999986
No 188
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.69 E-value=1.5e-16 Score=137.26 Aligned_cols=100 Identities=29% Similarity=0.375 Sum_probs=90.7
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCC------ccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCcccc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN------INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVT 319 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~ 319 (347)
.+++..+..|.++||+|+..+...++++|+. .+.+ ++..+..|.||||+|+..|+.+++++|++ .|++++.+
T Consensus 69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~ 146 (236)
T 1ikn_D 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQ 146 (236)
T ss_dssp CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC
Confidence 3567778899999999999888889999988 5543 57788899999999999999999999999 79999999
Q ss_pred CC-CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 320 DS-DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 320 d~-~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+. .|.||||+|+..|+.+++++|+++||
T Consensus 147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga 175 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGA 175 (236)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 98 99999999999999999999999986
No 189
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=124.80 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=75.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHH---HHHhccCCeeEEEEeeeCCCC---CceeEEEEEEcCHHHHHHHHhc-CCCccCCcc
Q psy630 6 RQLNKIFVGNLPWTVSHNELK---KFFSEYGQIMNASVMFDKNTG---LSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR 78 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~t~---~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 78 (347)
.+.++|||+|||+++++++|+ ++|++||.|..|.|++++.++ .++|||||+|.+.++|++|+.. |+..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456799999999999999999 999999999999999988754 5669999999999999999996 999999999
Q ss_pred ccccCCCccc
Q psy630 79 LSIQPSDSHN 88 (347)
Q Consensus 79 l~v~~~~~~~ 88 (347)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 190
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.69 E-value=6.2e-17 Score=148.84 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=93.1
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCC-----ccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFN-----INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 320 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d 320 (347)
.+++..+..|.|+||+|+..+..+++++|++ .+++ ++..|..|+||||+||..|+.+++++||+ +|++++.+|
T Consensus 164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d 241 (364)
T 3ljn_A 164 ASPTAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMED 241 (364)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCC
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Confidence 4677888899999999999999999999998 6777 99999999999999999999999999999 799999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 321 SDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 321 ~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
..|.||||+|+..|+.+++++|+++||
T Consensus 242 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 268 (364)
T 3ljn_A 242 NEHTVPLYLSVRAAMVLLTKELLQKTD 268 (364)
T ss_dssp TTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence 999999999999999999999999875
No 191
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=4.3e-17 Score=132.14 Aligned_cols=84 Identities=27% Similarity=0.516 Sum_probs=78.3
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|+. +++..+.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 446899999999999999999999999999999999999899999999999999999999998 4999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 77543
No 192
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.68 E-value=1.7e-17 Score=143.84 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=92.1
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC-c
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD-Y 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~-T 325 (347)
+.+..+..|.|+||+|+..++..++++|+. .++++|.+|..|+||||+||..|+.+++++|++ +|++++.++..|. |
T Consensus 62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t 139 (239)
T 1ycs_B 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQT 139 (239)
T ss_dssp SCCCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCC
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcc
Confidence 567778899999999999999999999998 799999999999999999999999999999999 7999999998877 9
Q ss_pred HHHHH--HHcCCHHHHHHHHhCCC
Q psy630 326 GLDYA--KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A--~~~~~~~~v~~Ll~~GA 347 (347)
|||+| +..|+.+++++|+++||
T Consensus 140 ~l~~a~~~~~g~~~~~~~Ll~~~a 163 (239)
T 1ycs_B 140 AADKCEEMEEGYTQCSQFLYGVQE 163 (239)
T ss_dssp HHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred hHHHHHHhhhccHHHHHHHHHhhh
Confidence 99999 78899999999998764
No 193
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.1e-17 Score=130.00 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=74.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
+...++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|++|+.+++..+.|+.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 45667999999999999999999999999 77999999986 99999999999999999999977999999999999887
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.+..
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7644
No 194
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.68 E-value=8.6e-18 Score=140.01 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=84.7
Q ss_pred cccCCcccCCCCCcHHHHHHcCCh------HHHHHHHhhcCCCCccccCCCCc-hHHHHHHHcC-----CHHHHHHHHhh
Q psy630 244 MINDESQLDDNEKNIYEWAKEGKL------DMLVKQLTKLKDFNINQLDENGL-NCLHWACDRG-----HLKVVQHLIEK 311 (347)
Q Consensus 244 ~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~lL~~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~~ 311 (347)
...+++..+..|.||||+|+..+. .+++++|+. .|+++|.+|..|+ ||||+|+..+ +.+++++||++
T Consensus 64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~ 142 (186)
T 3t8k_A 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ 142 (186)
T ss_dssp TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 345788888999999998876554 467888888 7999999999999 9999999854 35688999973
Q ss_pred cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy630 312 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345 (347)
Q Consensus 312 ~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 345 (347)
+|++++.+|..|.||||+|+..|+.++|++|++.
T Consensus 143 ~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 143 SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4999999999999999999999999999998764
No 195
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=124.83 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=72.9
Q ss_pred ccCCCeEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELK----KFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRL 79 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 79 (347)
....++|||+|||+.+++++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|..|+.. |+..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 6999999999988753 688999999999999999999975 9999999999
Q ss_pred cccCCCcccc
Q psy630 80 SIQPSDSHNR 89 (347)
Q Consensus 80 ~v~~~~~~~~ 89 (347)
.|.++.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987654
No 196
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.68 E-value=1.6e-16 Score=137.13 Aligned_cols=99 Identities=25% Similarity=0.289 Sum_probs=79.3
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+.+..+..+.+++|+|+..+..+++++|++ .+++++..+ ..|.||||+|+..|+.+++++|++ +|++++.+|..|+|
T Consensus 108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t 185 (241)
T 1k1a_A 108 DLEARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSS 185 (241)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCB
T ss_pred cccccCcCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCC
Confidence 344556677888888887777778888777 678888877 678888888888888888888887 68888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 186 ~L~~A~~~~~~~~v~~Ll~~ga 207 (241)
T 1k1a_A 186 ALHSASGRGLLPLVRTLVRSGA 207 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhcCC
Confidence 8888888888888888888875
No 197
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.68 E-value=1.1e-16 Score=145.67 Aligned_cols=96 Identities=23% Similarity=0.215 Sum_probs=88.0
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+++..+..|.|+||+|+..+...++++|+...++++|.+|..|+||||+||..|+.++|++||+ +||++|.+ |
T Consensus 230 ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~ 303 (337)
T 4g8k_A 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----D 303 (337)
T ss_dssp CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----C
T ss_pred CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----C
Confidence 46777888999999999998888888888876789999999999999999999999999999999 79999865 5
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.++|++||++||
T Consensus 304 ~L~~A~~~~~~~iv~~Ll~~GA 325 (337)
T 4g8k_A 304 LVMTARRNYDHSLVKVLLSHGA 325 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCcC
Confidence 9999999999999999999998
No 198
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=120.06 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=74.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|++ +++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999653 5689999999999999999996 49999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9877654
No 199
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.68 E-value=7.3e-17 Score=143.59 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCC-CcHHHHHHH
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG-DYGLDYAKA 332 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g-~TpLh~A~~ 332 (347)
.|.|+||+|+..+..+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..| .||||+|+.
T Consensus 61 ~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~ 138 (285)
T 3kea_A 61 ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVM 138 (285)
T ss_dssp TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCSSSGGGSHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHH
Confidence 48999999999888889999998 799999999999999999999999999999999 699999999999 799999999
Q ss_pred cCCHHHHHHHHhCCC
Q psy630 333 IEHTDLIEYLVNSGS 347 (347)
Q Consensus 333 ~~~~~~v~~Ll~~GA 347 (347)
.|+.+++++|+++|+
T Consensus 139 ~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 139 LNDVSIVSYFLSEIP 153 (285)
T ss_dssp TTCHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhCCC
Confidence 999999999999885
No 200
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.68 E-value=7.6e-17 Score=141.11 Aligned_cols=97 Identities=22% Similarity=0.176 Sum_probs=88.6
Q ss_pred ccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC--------------CCCchHHHHHHHcCCHHHHHHHHhh--cC
Q psy630 250 QLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD--------------ENGLNCLHWACDRGHLKVVQHLIEK--CG 313 (347)
Q Consensus 250 ~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~~--~g 313 (347)
..+..|.|+||+|+..+..+++++|++ .|++++..+ ..|+||||+|+..|+.+++++|++. .|
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 166 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 345588999999999999999999999 899999998 6899999999999999999999982 49
Q ss_pred CCccccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCC
Q psy630 314 ADVNVTDSDGDYGLDYAKAIEH---------TDLIEYLVNSGS 347 (347)
Q Consensus 314 a~i~~~d~~g~TpLh~A~~~~~---------~~~v~~Ll~~GA 347 (347)
++++.+|..|+||||+|+..++ .+++++|+++||
T Consensus 167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 209 (260)
T 3jxi_A 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209 (260)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999887 799999999875
No 201
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.68 E-value=4e-17 Score=142.61 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=87.6
Q ss_pred CCCCcHHHHHHcCChHHHHHHHhhc--CCCCccccCCCCchHHHHHHH--cCCHH-------HHHHHHhhcCCCc-----
Q psy630 253 DNEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQLDENGLNCLHWACD--RGHLK-------VVQHLIEKCGADV----- 316 (347)
Q Consensus 253 ~~~~~~l~~a~~~~~~~~~~lL~~~--~~~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~ga~i----- 316 (347)
..|.|+||+|+..+..+++++|++. .|+++|.+|..|+||||+|+. .++.+ ++++|++ +|+++
T Consensus 134 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~ 212 (256)
T 2etb_A 134 YFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQ 212 (256)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccc
Confidence 3499999999999999999999985 689999999999999999999 88888 9999999 79999
Q ss_pred --cccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 317 --NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 317 --~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+.+|..|+||||+|+..|+.+++++||++|+
T Consensus 213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 9999999999999999999999999999874
No 202
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=8.8e-17 Score=137.95 Aligned_cols=82 Identities=21% Similarity=0.453 Sum_probs=76.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYG--QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
..++|||+|||+++|+++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|++|+. +|+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999998 499999999999999
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87643
No 203
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=115.84 Aligned_cols=80 Identities=25% Similarity=0.639 Sum_probs=72.9
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLS 80 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 80 (347)
++.....++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 2 SSGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp CSCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 3456778999999999999999999999999999999987 57999999999999999975 99999999999
Q ss_pred ccCCCcccc
Q psy630 81 IQPSDSHNR 89 (347)
Q Consensus 81 v~~~~~~~~ 89 (347)
|.++.++..
T Consensus 74 v~~a~~~~~ 82 (90)
T 2dnq_A 74 VEASKNKSK 82 (90)
T ss_dssp EECSSCCCC
T ss_pred EEECCCCCC
Confidence 999887654
No 204
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.68 E-value=1.1e-16 Score=139.84 Aligned_cols=96 Identities=21% Similarity=0.117 Sum_probs=88.4
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCC-------------CchHHHHHHHcCCHHHHHHHHhh--cCCC
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDEN-------------GLNCLHWACDRGHLKVVQHLIEK--CGAD 315 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~~--~ga~ 315 (347)
.+..|.|+||+|+..+..+++++|++ .|++++.+|.. |.||||+|+..|+.+++++|+++ .|++
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~ 164 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence 34679999999999999999999999 79999999886 99999999999999999999983 4999
Q ss_pred ccccCCCCCcHHHHHHH--cCCHH-------HHHHHHhCCC
Q psy630 316 VNVTDSDGDYGLDYAKA--IEHTD-------LIEYLVNSGS 347 (347)
Q Consensus 316 i~~~d~~g~TpLh~A~~--~~~~~-------~v~~Ll~~GA 347 (347)
+|.+|..|+||||+|+. .++.+ ++++|+++||
T Consensus 165 ~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga 205 (256)
T 2etb_A 165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205 (256)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC
Confidence 99999999999999999 88888 9999999875
No 205
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=140.42 Aligned_cols=99 Identities=22% Similarity=0.188 Sum_probs=84.6
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+..+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++ .|++++. +..|.|
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~-~~~g~t 103 (261)
T 2xai_A 27 WAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQP-ESDLAS 103 (261)
T ss_dssp CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSC-SCTTCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCC-CCCCCC
Confidence 4577778888899999888888888888888 788889888999999999999999999999998 6888885 445889
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++|+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~ 125 (261)
T 2xai_A 104 PIHEAARRGHVECVNSLIAYGG 125 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCcHHHHHHHHHcCC
Confidence 9999999999999999998875
No 206
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.68 E-value=1.1e-16 Score=147.17 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=92.5
Q ss_pred cCCcccC--CCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCC
Q psy630 246 NDESQLD--DNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDG 323 (347)
Q Consensus 246 ~~~~~~~--~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g 323 (347)
.+++..+ ..+.|+||+|+..+...++++|++ .|+++|.+|..|+||||+|+..|+.+++++||+ +|++++.+|..|
T Consensus 224 advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~-~Gad~~~~d~~G 301 (368)
T 3jue_A 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLK-RGADLGARDSEG 301 (368)
T ss_dssp CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTS
T ss_pred CCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH-CcCCCCCcCCCC
Confidence 4566666 789999999999999999999999 799999999999999999999999999999999 799999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCC
Q psy630 324 DYGLDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 324 ~TpLh~A~~~~~~~~v~~Ll~~G 346 (347)
.||||+|+..++.+++++|+.+|
T Consensus 302 ~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 302 RDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999765
No 207
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=136.14 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCc-----cccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNI-----NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~-----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
+.+..+..|.|+||+|+..+..+++++|++ .++++ +..|..|.||||+|+..|+.+++++|++ .|++++..+.
T Consensus 29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~ 106 (232)
T 2rfa_A 29 EVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARAT 106 (232)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCC
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHh-CCCCCCcccC
Confidence 456678899999999999999999999988 67766 6678899999999999999999999999 7999999876
Q ss_pred -------------CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 -------------DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 -------------~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.|.||||+|+..|+.+++++|+++||
T Consensus 107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 145 (232)
T 2rfa_A 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145 (232)
T ss_dssp SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 79999999999999999999999986
No 208
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=140.63 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=62.6
Q ss_pred cccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy630 249 SQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 328 (347)
Q Consensus 249 ~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh 328 (347)
+..+..|.|+||+|+..+...++++|+. .+++++.+|..|+||||+||..|+.+++++|++ .|++++.+|..|.||||
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~ 130 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLF 130 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHH
Confidence 3445566666666666666666666665 566666666666666666666666666666666 46666666666666666
Q ss_pred HHHHcCCHHHHHHHHhCCC
Q psy630 329 YAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+..|+.+++++|+++|+
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~ 149 (285)
T 3d9h_A 131 NACVSGSWDCVNLLLQHGA 149 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTC
T ss_pred HHHHcCHHHHHHHHHHCCC
Confidence 6666666666666666654
No 209
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=115.26 Aligned_cols=81 Identities=27% Similarity=0.592 Sum_probs=72.4
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
......++|||+|||+++++++|+++|++||.|..| +.++.+|+ ||||+|.+.++|.+|+.+++..+.|+.|.|.
T Consensus 3 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 3 SGSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVR 77 (94)
T ss_dssp SCCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCB
T ss_pred CccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEE
Confidence 445677899999999999999999999999999987 66666665 9999999999999999999999999999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.++.
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 887654
No 210
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.67 E-value=2.7e-16 Score=135.45 Aligned_cols=99 Identities=29% Similarity=0.373 Sum_probs=87.5
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.+++|+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 103 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~ 180 (237)
T 3b7b_A 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSP 180 (237)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCH
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 345566778899999988888888888888 788999999999999999999999999999998 699999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 181 L~~A~~~~~~~~v~~Ll~~ga 201 (237)
T 3b7b_A 181 LHIAARENRYDCVVLFLSRDS 201 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHhCCHhHHHHHHHcCC
Confidence 999999999999999999886
No 211
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.67 E-value=5.1e-17 Score=143.37 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=88.6
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhc--CCCCccccCCCCchHHHHHHHcCC---------HHHHHHHHhhcCCCcc--
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQLDENGLNCLHWACDRGH---------LKVVQHLIEKCGADVN-- 317 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~--~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~ga~i~-- 317 (347)
.+..|.|+||+|+..+..+++++|++. .|++++.+|..|+||||+|+..|+ .+++++|++ .|+++|
T Consensus 144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~ 222 (273)
T 2pnn_A 144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPT 222 (273)
T ss_dssp CCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccc
Confidence 345799999999999999999999885 689999999999999999999998 899999999 799997
Q ss_pred -----ccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 318 -----VTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 318 -----~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.+|..|+||||+|+..|+.+++++||++||
T Consensus 223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 489999999999999999999999999987
No 212
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=1.3e-16 Score=130.07 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=76.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 346799999999999999999999999999999999999999999999999999999999985 9999999999999987
Q ss_pred cccc
Q psy630 86 SHNR 89 (347)
Q Consensus 86 ~~~~ 89 (347)
++..
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6543
No 213
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.67 E-value=2.3e-16 Score=139.15 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=93.8
Q ss_pred cCCcccCCCCCcHHHHHHcCCh----HHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKL----DMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~----~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
.+.+..+..|.+++|+|+..+. ..++++|.+ .|++++.+|..|.||||+|+..|+.+++++|+++.|++++.+|.
T Consensus 173 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~ 251 (285)
T 1wdy_A 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT
T ss_pred CCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCC
Confidence 3567778889999999988777 889999998 89999999999999999999999999999999856999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.|.||||+|+..|+.+++++|+++||
T Consensus 252 ~g~t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 252 DGKTALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 99999999999999999999999997
No 214
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=122.17 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=70.6
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C--CCccCCccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D--SHVLEGSRLSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~l~v 81 (347)
....++|||+|||+++++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+.. + +..+.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 455689999999999999999999999999999999865 68999999999999999984 4 57899999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99877543
No 215
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.67 E-value=4.8e-17 Score=142.36 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhc--CCCCccccCCCCchHHHHHHHcCC---------HHHHHHHHhhcCCCc----
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQLDENGLNCLHWACDRGH---------LKVVQHLIEKCGADV---- 316 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~--~~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~ga~i---- 316 (347)
+..|.|+||+|+..+..+++++|++. .|++++.+|..|+||||+||..++ .+++++|++ .|+++
T Consensus 137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~ 215 (260)
T 3jxi_A 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDT 215 (260)
T ss_dssp CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCccccccc
Confidence 36799999999999999999999885 689999999999999999999888 799999999 79999
Q ss_pred ---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 317 ---NVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 317 ---~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+.+|..|+||||+|+..|+.+++++||++|+
T Consensus 216 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 7799999999999999999999999999874
No 216
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.67 E-value=1.2e-17 Score=131.76 Aligned_cols=98 Identities=20% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 35 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tp 112 (137)
T 3c5r_A 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRP 112 (137)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCG
T ss_pred CCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCH
Confidence 556677889999999999999999999998 899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~G 346 (347)
||+|+..++.+++.+|.+.+
T Consensus 113 l~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 113 VDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp GGGCCCHHHHHHHSCC----
T ss_pred HHHHhhccHHHHHhhccccc
Confidence 99999999999988877654
No 217
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.67 E-value=2.5e-16 Score=132.12 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=92.3
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcC-CCccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~g-a~i~~~d~~g~ 324 (347)
.+++..+..+.+++|+|+..+..+++++|+...+.+++..|..|.||||+|+..|+.+++++|++ .| ++++.+|..|+
T Consensus 63 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~ 141 (201)
T 3hra_A 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE-DGREDIDFQNDFGY 141 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHH-HCCCCTTCCCTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcCCCCCCCC
Confidence 35677788899999999999999999998855888999999999999999999999999999999 58 99999999999
Q ss_pred cHHHHHHHcCC-----HHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEH-----TDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~-----~~~v~~Ll~~GA 347 (347)
||||+|+..++ .+++++|+++||
T Consensus 142 t~L~~A~~~~~~~~~~~~~v~~Ll~~ga 169 (201)
T 3hra_A 142 TALIEAVGLREGNQLYQDIVKLLMENGA 169 (201)
T ss_dssp CHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence 99999999998 999999999986
No 218
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=117.57 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=68.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCC--ccCCccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSH--VLEGSRLSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~--~~~g~~l~v 81 (347)
..+.++|||+|||+++|+++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|+.. ++. .+.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34678999999999999999999999999999999974 368999999999999999985 555 488999999
Q ss_pred cCCCcc
Q psy630 82 QPSDSH 87 (347)
Q Consensus 82 ~~~~~~ 87 (347)
.++.++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998764
No 219
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=118.40 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=70.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~v 81 (347)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+.. ++..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999998754 68999999999999999983 678899999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99876543
No 220
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.67 E-value=2.5e-16 Score=145.53 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=90.3
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
.+..|.|+||+|+..+..+++++|+...+++++.+|..|.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|
T Consensus 275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A 353 (373)
T 2fo1_E 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLA 353 (373)
T ss_dssp SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHH
T ss_pred ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHH
Confidence 566899999999999999999999975669999999999999999999999999999999 7999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..|+.+++++|+++||
T Consensus 354 ~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 354 QANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHTTCHHHHHHHHTTC-
T ss_pred HHcCCHHHHHHHHhcCc
Confidence 99999999999999986
No 221
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.67 E-value=2.7e-16 Score=121.56 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=78.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.||
T Consensus 32 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~ 109 (123)
T 3aaa_C 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTA 109 (123)
T ss_dssp CTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CcCccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 456677889999999999999999999998 899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHc
Q psy630 327 LDYAKAI 333 (347)
Q Consensus 327 Lh~A~~~ 333 (347)
||+|+..
T Consensus 110 l~~A~~~ 116 (123)
T 3aaa_C 110 FEATDNQ 116 (123)
T ss_dssp HHHCCCH
T ss_pred HHHhCCH
Confidence 9999443
No 222
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.66 E-value=1.8e-16 Score=139.80 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=88.6
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCC--------------CCchHHHHHHHcCCHHHHHHHHhh--cCC
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDE--------------NGLNCLHWACDRGHLKVVQHLIEK--CGA 314 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~Ll~~--~ga 314 (347)
.+..|.|+||+|+..+..+++++|++ .|++++.++. .|.||||+|+..|+.+++++||++ .|+
T Consensus 97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 97 SYYKGQTALHIAIERRNMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 45689999999999999999999999 7999999987 799999999999999999999983 499
Q ss_pred CccccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCC
Q psy630 315 DVNVTDSDGDYGLDYAKAIEH---------TDLIEYLVNSGS 347 (347)
Q Consensus 315 ~i~~~d~~g~TpLh~A~~~~~---------~~~v~~Ll~~GA 347 (347)
+++.+|..|+||||+|+..|+ .+++++|+++||
T Consensus 176 d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 217 (273)
T 2pnn_A 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217 (273)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence 999999999999999999998 899999998874
No 223
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-16 Score=117.91 Aligned_cols=77 Identities=17% Similarity=0.382 Sum_probs=70.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.+...++|||+|||+++++++|+++|++||.|..++++ +++|||||+|.+.++|.+|+.. ++..+.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999987 3579999999999999999975 9999999999999
Q ss_pred CCCc
Q psy630 83 PSDS 86 (347)
Q Consensus 83 ~~~~ 86 (347)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8865
No 224
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.66 E-value=2.2e-16 Score=130.96 Aligned_cols=97 Identities=28% Similarity=0.395 Sum_probs=86.6
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+| ..|+||||+|+..|+.+++++|++ +|++++.+|..|+|
T Consensus 68 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t 145 (183)
T 3deo_A 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGADIEVEDERGLT 145 (183)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCC
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH-cCCCCcCCCCCCCC
Confidence 456677889999999999999999999999 899999998 899999999999999999999999 69999999999999
Q ss_pred HHHHHHHc----------------CCHHHHHHHHhC
Q psy630 326 GLDYAKAI----------------EHTDLIEYLVNS 345 (347)
Q Consensus 326 pLh~A~~~----------------~~~~~v~~Ll~~ 345 (347)
|||+|+.. |+.+++++|.++
T Consensus 146 pl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 146 ALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 99998875 566777777654
No 225
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=6.5e-17 Score=122.20 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=70.9
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRL 79 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 79 (347)
+..+...++|||+|||+++++++|+++|++|| .|..+.++. +.++|||||+|.+.++|++|++ +|+..+.|+.|
T Consensus 22 ~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 22 SKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp ---CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34566778999999999999999999999999 899998853 3578999999999999999997 59999999999
Q ss_pred cccCCCcc
Q psy630 80 SIQPSDSH 87 (347)
Q Consensus 80 ~v~~~~~~ 87 (347)
.|.++...
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99887653
No 226
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.66 E-value=1.4e-16 Score=138.48 Aligned_cols=97 Identities=28% Similarity=0.393 Sum_probs=89.1
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
+++..+..|.|+||+|+..++..++++|+. .|+++|.+| ..|+||||+||..|+.+++++|++ +|++++.+|..|+|
T Consensus 69 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t 146 (244)
T 3ui2_A 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE-LGADIEVEDERGLT 146 (244)
T ss_dssp CTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCc
Confidence 556778889999999999999999999999 899999998 789999999999999999999999 79999999999999
Q ss_pred HHHHHH----------------HcCCHHHHHHHHhC
Q psy630 326 GLDYAK----------------AIEHTDLIEYLVNS 345 (347)
Q Consensus 326 pLh~A~----------------~~~~~~~v~~Ll~~ 345 (347)
|||+|+ ..|+.+++++|+++
T Consensus 147 ~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 147 ALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 999988 66889999999874
No 227
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.66 E-value=1.7e-16 Score=141.68 Aligned_cols=94 Identities=28% Similarity=0.405 Sum_probs=73.2
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
+..+.++|++|+..+...++++|+. .|+++|..|..|.||||+||..|+.+++++|++ +|++++.+|..|.||||+|+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHH
Confidence 3455677777766666666666666 578888888888888888888888888888887 68888888888888888888
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..|+.+++++|+++||
T Consensus 115 ~~g~~~~v~~Ll~~g~ 130 (299)
T 1s70_B 115 SCGYLDIAEYLISQGA 130 (299)
T ss_dssp HHTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHhCCC
Confidence 8888888888888775
No 228
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.66 E-value=4.3e-16 Score=141.69 Aligned_cols=101 Identities=27% Similarity=0.364 Sum_probs=90.2
Q ss_pred cCCcccCCCCCcHHHHHH----cCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 246 NDESQLDDNEKNIYEWAK----EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~----~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
.+++..+..|.++++.++ .++...++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+...|+++|.+|.
T Consensus 193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~ 271 (337)
T 4g8k_A 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 271 (337)
T ss_dssp CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT
T ss_pred CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC
Confidence 356778888888887654 3445678888888 89999999999999999999999999999999855899999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
.|+||||+|+..|+.++|++||++||
T Consensus 272 ~G~TpL~~A~~~g~~~iv~~Ll~~GA 297 (337)
T 4g8k_A 272 DGKTALLLAVELKLKKIAELLCKRGA 297 (337)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 99999999999999999999999997
No 229
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.66 E-value=3.3e-16 Score=136.68 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=92.5
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.++||+|+..+...++++|+. .+++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tp 193 (253)
T 1yyh_A 116 DLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETP 193 (253)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence 345567789999999998888889999998 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 194 L~~A~~~~~~~~v~~Ll~~ga 214 (253)
T 1yyh_A 194 LFLAAREGSYETAKVLLDHFA 214 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999999986
No 230
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.65 E-value=5.2e-16 Score=133.13 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=92.4
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+..+++++|++ .+++++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|.||
T Consensus 65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~ 142 (231)
T 3aji_A 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATA 142 (231)
T ss_dssp CSCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcH
Confidence 456677889999999999889999999998 799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++|+
T Consensus 143 L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 143 MHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhcCC
Confidence 999999999999999999885
No 231
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=117.37 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=75.1
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 356678999999999999999999999774 788888988999999999999999999999984 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987654
No 232
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=118.83 Aligned_cols=82 Identities=18% Similarity=0.387 Sum_probs=73.2
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999977 56666 579999999999999999999998 59999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9877643
No 233
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.1e-17 Score=119.89 Aligned_cols=79 Identities=11% Similarity=0.207 Sum_probs=69.6
Q ss_pred ccCCCeEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-C--CCccCCcccc
Q psy630 5 IRQLNKIFVGNLPW-TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-D--SHVLEGSRLS 80 (347)
Q Consensus 5 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~--~~~~~g~~l~ 80 (347)
....++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|+.. + +..+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45678999999999 9999999999999999999999865 47999999999999999984 4 5569999999
Q ss_pred ccCCCcccc
Q psy630 81 IQPSDSHNR 89 (347)
Q Consensus 81 v~~~~~~~~ 89 (347)
|.++..+..
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999876543
No 234
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.65 E-value=2.7e-16 Score=148.12 Aligned_cols=99 Identities=22% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|.+ .+++++.+|..|+||||+|+..|+.+++++|++ +|+++|.+|..|+||
T Consensus 270 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~ 347 (437)
T 1n11_A 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSP 347 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCH
Confidence 456667778888888888777778888887 688888888888888888888888888888888 688888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.++|++|+++||
T Consensus 348 L~~A~~~g~~~iv~~Ll~~ga 368 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLLLKNGA 368 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHCChHHHHHHHHHCcC
Confidence 888888888888888888886
No 235
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-18 Score=128.72 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=79.5
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMN--------ASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
+..+.++|||+|||+++++++|+++|++||.|.. |++++++.++.++|||||+|.+.++|.+|+.. ++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 99999988999999999999999999999984 99999
Q ss_pred CCccccccCCCcccc
Q psy630 75 EGSRLSIQPSDSHNR 89 (347)
Q Consensus 75 ~g~~l~v~~~~~~~~ 89 (347)
.|+.|.|.++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999887654
No 236
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=116.31 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=69.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRLSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~v 81 (347)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+.. ++..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999998753 68999999999999999984 456699999999
Q ss_pred cCCCccc
Q psy630 82 QPSDSHN 88 (347)
Q Consensus 82 ~~~~~~~ 88 (347)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9987654
No 237
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.65 E-value=6e-16 Score=140.81 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=87.6
Q ss_pred cCCCCCcHHHHHHcC---ChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 251 LDDNEKNIYEWAKEG---KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~---~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.+..+.+++|+|+.. +...++++|.. .+++++.+|..|+||||+|+..|+.+++++|++ +|+++|.+|..|+|||
T Consensus 207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L 284 (351)
T 3utm_A 207 QPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTAL 284 (351)
T ss_dssp CTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred CCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHH
Confidence 456788999999887 66788899988 899999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++|+++||
T Consensus 285 ~~A~~~~~~~~v~~Ll~~ga 304 (351)
T 3utm_A 285 HRAALAGHLQTCRLLLSYGS 304 (351)
T ss_dssp HHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHcCcHHHHHHHHHcCC
Confidence 99999999999999999986
No 238
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.65 E-value=4.7e-16 Score=138.73 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=81.9
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC----------------------------------------
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD---------------------------------------- 286 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d---------------------------------------- 286 (347)
+.+..+..|.|+||+|+..+..+++++|+. .+++++..|
T Consensus 98 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 176 (299)
T 1s70_B 98 NINQPDNEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176 (299)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH
Confidence 445556667777777777666667777766 566655443
Q ss_pred --------------------CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q psy630 287 --------------------ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 287 --------------------~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G 346 (347)
..|.||||+||..|+.+++++|++ +|+++|.+|..|.||||+|+..|+.+++++|+++|
T Consensus 177 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 255 (299)
T 1s70_B 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255 (299)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence 457789999999999999999999 79999999999999999999999999999999998
Q ss_pred C
Q psy630 347 S 347 (347)
Q Consensus 347 A 347 (347)
|
T Consensus 256 a 256 (299)
T 1s70_B 256 C 256 (299)
T ss_dssp C
T ss_pred C
Confidence 6
No 239
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.65 E-value=2.5e-16 Score=144.78 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=92.2
Q ss_pred CcccCCCCCcHHHHHHcCC--hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCC-----ccccC
Q psy630 248 ESQLDDNEKNIYEWAKEGK--LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD-----VNVTD 320 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~--~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~-----i~~~d 320 (347)
.+..+..+.|+||+|+..+ ..+++++|++ .|++++.+|..|+||||+||..|+.+++++|++ +|++ +|.+|
T Consensus 131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~ 208 (364)
T 3ljn_A 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYAN 208 (364)
T ss_dssp TEEEEESCCCHHHHHHHSCGGGHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCC
T ss_pred cccCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccC
Confidence 4456778999999999999 8899999999 699999999999999999999999999999999 6999 99999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 321 SDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 321 ~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
..|+||||+|+..|+.++|++||++||
T Consensus 209 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga 235 (364)
T 3ljn_A 209 KQGNSHLHWAILINWEDVAMRFVEMGI 235 (364)
T ss_dssp TTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999999986
No 240
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=1.1e-16 Score=118.50 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=74.4
Q ss_pred cccCCCeEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELK----KFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR 78 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 78 (347)
+....++|||+|||+++++++|+ ++|++||.|..+.+++ +|.++|||||+|.+.++|.+|+.. ++..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45677899999999999999999 9999999999999873 578899999999999999999985 999999999
Q ss_pred ccccCCCcccc
Q psy630 79 LSIQPSDSHNR 89 (347)
Q Consensus 79 l~v~~~~~~~~ 89 (347)
|.|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999887654
No 241
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=115.27 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=71.3
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC--Cccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE--GSRLSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~~l~v 81 (347)
+...++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|++|+.. ++..+. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 455689999999999999999999999999999998753 68999999999999999985 999999 999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99887643
No 242
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=115.51 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=70.4
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|++|+.. ++..+.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999997 66665 46789999999999999999975 99999999999999
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 243
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.2e-16 Score=111.51 Aligned_cols=76 Identities=20% Similarity=0.481 Sum_probs=69.2
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-c-CCCccCCcccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLS 80 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~-~~~~~~g~~l~ 80 (347)
+.....++|||+|||+++++++|+++|++||.|..++++++ +|||||+|.+.++|.+|+. + ++..+.|++|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34566789999999999999999999999999999999863 6899999999999999998 5 99999999999
Q ss_pred ccCC
Q psy630 81 IQPS 84 (347)
Q Consensus 81 v~~~ 84 (347)
|.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9876
No 244
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.9e-16 Score=119.81 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=69.7
Q ss_pred CeEEEeCC----CCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcC----H-HH---HHHHHh--c-CCCc
Q psy630 9 NKIFVGNL----PWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQN----K-EA---VDKVFS--T-DSHV 73 (347)
Q Consensus 9 ~~l~V~nL----p~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~----~-~~---a~~a~~--~-~~~~ 73 (347)
++|||+|| |+.+++.+|+++|++||+|.++.++.|+.||.|+|||||+|.+ . ++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 2 22 788877 4 9999
Q ss_pred cCCccccccCCCc
Q psy630 74 LEGSRLSIQPSDS 86 (347)
Q Consensus 74 ~~g~~l~v~~~~~ 86 (347)
|.|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999986654
No 245
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=138.45 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=88.7
Q ss_pred CCcccCCCCCcHHHHHH-----cCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCC
Q psy630 247 DESQLDDNEKNIYEWAK-----EGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~-----~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~ 321 (347)
+.+..+..|.|++|+|+ ..+...++++|.. .+..++..|..|+||||+||..|+.+++++||+ +|+++|.+|.
T Consensus 137 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~ 214 (276)
T 4hbd_A 137 KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR-LGNINAKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDD 214 (276)
T ss_dssp CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHH-HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCC
Confidence 56677888999999988 4566677777777 678888889999999999999999999999999 7999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHh-CCC
Q psy630 322 DGDYGLDYAKAIEHTDLIEYLVN-SGS 347 (347)
Q Consensus 322 ~g~TpLh~A~~~~~~~~v~~Ll~-~GA 347 (347)
.|+||||+|+..|+.+++++|++ .||
T Consensus 215 ~G~TpLh~A~~~g~~~iv~~Ll~~~ga 241 (276)
T 4hbd_A 215 DGSTALMCACEHGHKEIAGLLLAVPSC 241 (276)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHTSTTC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence 99999999999999999999999 775
No 246
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.1e-17 Score=123.25 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=72.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999985433332223789999999999999999999984 999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87654
No 247
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=119.04 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=70.4
Q ss_pred cccCCCeEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc---CCCccCCccc
Q psy630 4 SIRQLNKIFVGNLPWT-VSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST---DSHVLEGSRL 79 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l 79 (347)
+....++|||+|||++ +++++|+++|++||.|..|.|++ ++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556789999999998 99999999999999999999964 468999999999999999984 5677999999
Q ss_pred cccCCCcccc
Q psy630 80 SIQPSDSHNR 89 (347)
Q Consensus 80 ~v~~~~~~~~ 89 (347)
.|.++..+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999876543
No 248
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.64 E-value=9e-16 Score=131.30 Aligned_cols=94 Identities=30% Similarity=0.391 Sum_probs=88.5
Q ss_pred cCCCCCcHHHHHHcCChHHHHHHHhhcCC--CCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHH
Q psy630 251 LDDNEKNIYEWAKEGKLDMLVKQLTKLKD--FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLD 328 (347)
Q Consensus 251 ~~~~~~~~l~~a~~~~~~~~~~lL~~~~~--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh 328 (347)
.+..|.|+||+|+..+..+++++|++ .+ .+++..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~ 145 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLH 145 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHS-SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHH
Confidence 56788999999998888889999888 56 8899999999999999999999999999999 79999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCC
Q psy630 329 YAKAIEHTDLIEYLVNSG 346 (347)
Q Consensus 329 ~A~~~~~~~~v~~Ll~~G 346 (347)
+|+..|+.+++++|+++|
T Consensus 146 ~A~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 146 RAASVGSLKLIELLCGLG 163 (228)
T ss_dssp HHHHTTCHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHhcC
Confidence 999999999999999998
No 249
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.64 E-value=9.5e-17 Score=133.67 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHcCC----hHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC------HHHHHHHHhhcCCCccccCCC
Q psy630 253 DNEKNIYEWAKEGK----LDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH------LKVVQHLIEKCGADVNVTDSD 322 (347)
Q Consensus 253 ~~~~~~l~~a~~~~----~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~------~~~v~~Ll~~~ga~i~~~d~~ 322 (347)
..|.||||+|+..+ ...++++|++ .|+++|.+|..|+||||+|+..++ .+++++||+ +|+++|.+|..
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~-~Gadin~~d~~ 113 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE-KGADITALYKP 113 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH-TTCCSSSCBGG
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHH-CCCCCCccCCC
Confidence 56889999998876 3778899888 899999999999999999999987 688999999 79999999999
Q ss_pred CC-cHHHHHHHcC-----CHHHHHHHHh-CCC
Q psy630 323 GD-YGLDYAKAIE-----HTDLIEYLVN-SGS 347 (347)
Q Consensus 323 g~-TpLh~A~~~~-----~~~~v~~Ll~-~GA 347 (347)
|+ ||||+|+..+ +.+++++|++ +||
T Consensus 114 g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga 145 (186)
T 3t8k_A 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL 145 (186)
T ss_dssp GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred cCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence 99 9999999954 4569999999 886
No 250
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=7.3e-16 Score=114.05 Aligned_cols=76 Identities=32% Similarity=0.615 Sum_probs=69.1
Q ss_pred cccCCCeEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 4 SIRQLNKIFVGNLPW-TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
.....++|||+|||+ ++++++|+++|++||.|..+++. +|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 356678999999998 99999999999999999999983 68999999999999999985 999999999999
Q ss_pred cCCCcc
Q psy630 82 QPSDSH 87 (347)
Q Consensus 82 ~~~~~~ 87 (347)
.++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 988664
No 251
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.64 E-value=4.1e-16 Score=138.73 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=88.7
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCC-chHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENG-LNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
.+++..+..|.|+||+|+..+..+++++|++ .|++++.+|..| .||||+|+..|+.+++++|++ .|+++... ..|.
T Consensus 86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~ 162 (285)
T 3kea_A 86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPSTFDL-AILL 162 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT-TSCTTCCC-STHH
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCccccc-cCCc
Confidence 3577788899999999999999999999998 699999999999 799999999999999999999 69887332 2899
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||+|+..|+.+++++|+++||
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHcChHHHHHHHHHcCC
Confidence 99999999999999999998874
No 252
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=2.9e-16 Score=114.17 Aligned_cols=80 Identities=21% Similarity=0.499 Sum_probs=62.9
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQ 82 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 82 (347)
..+....+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|+++.. ....+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34567789999999999999999999999999999999864 78999999999999885432 2444569999999
Q ss_pred CCCccc
Q psy630 83 PSDSHN 88 (347)
Q Consensus 83 ~~~~~~ 88 (347)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 887754
No 253
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.63 E-value=4.4e-16 Score=146.68 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+++..+..+.|+||+|+..++.+++++|++ .+++++.+|..|+||||+||..|+.+++++|++ +|++++..+..|.||
T Consensus 39 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~ 116 (437)
T 1n11_A 39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE-NNANPNLATTAGHTP 116 (437)
T ss_dssp CSCCSSSCCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTCCCH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-CCCCCCCCCCCCCcH
Confidence 456666777788887777777777777777 677778778888888888888888888888887 588888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++|+
T Consensus 117 L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHhCCC
Confidence 888888888888888877764
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=117.02 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=72.7
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999865 68999999999999999975 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9887654
No 255
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=115.62 Aligned_cols=79 Identities=28% Similarity=0.544 Sum_probs=71.4
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
..+.++|||+|||+++++++|+++|++||.|..++++++ +|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456689999999999999999999999999999999753 68999999999999999975 99999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 877543
No 256
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-16 Score=117.14 Aligned_cols=78 Identities=26% Similarity=0.373 Sum_probs=71.1
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCC-----cc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEG-----SR 78 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-----~~ 78 (347)
....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++|++ +|+..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999865 899999999999999998 59999999 99
Q ss_pred ccccCCCcccc
Q psy630 79 LSIQPSDSHNR 89 (347)
Q Consensus 79 l~v~~~~~~~~ 89 (347)
|.|.++.++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99998877543
No 257
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=133.81 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=91.6
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCc
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~T 325 (347)
.+.+..+..|.|+||+|+..+..+++++|++ .+++++. +..|.||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t 136 (261)
T 2xai_A 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQP-ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGT 136 (261)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTBC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcCCCCCCC
Confidence 4577888999999999999999999999998 7888875 4569999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..|+.+++++|+++||
T Consensus 137 ~L~~A~~~~~~~~v~~Ll~~g~ 158 (261)
T 2xai_A 137 PLYLACENQQRACVKKLLESGA 158 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 9999999999999999999986
No 258
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=6.5e-16 Score=116.65 Aligned_cols=78 Identities=22% Similarity=0.463 Sum_probs=70.6
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999987 68999999999999999985 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9877554
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.63 E-value=1.8e-15 Score=133.42 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=89.7
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAK 331 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~ 331 (347)
+..|.++||+|+..+..+++++|++ .+++++.+|..|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~ 113 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAA 113 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTCCBHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCcccCCHHHHHH
Confidence 5678899999999999999999999 799999999999999999999999999999999 79999999999999999999
Q ss_pred HcCCHHHHHHHHhCCC
Q psy630 332 AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 332 ~~~~~~~v~~Ll~~GA 347 (347)
..|+.+++++|+++|+
T Consensus 114 ~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 114 VYGKVKALKFLYKRGA 129 (285)
T ss_dssp HTTCHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHhCC
Confidence 9999999999999985
No 260
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.63 E-value=1.5e-15 Score=130.70 Aligned_cols=99 Identities=31% Similarity=0.446 Sum_probs=85.2
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcC-CCccccCCCCCc
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG-ADVNVTDSDGDY 325 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~g-a~i~~~d~~g~T 325 (347)
+.+..+..|.++||+|+..+..+++++|++ .+++++.++..|.||||+|+..|+.+++++|++ .| ++++..+..|.|
T Consensus 36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t 113 (237)
T 3b7b_A 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-NGQMDVNCQDDGGWT 113 (237)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHT-TTCCCTTCCCTTSCC
T ss_pred CcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCCC
Confidence 566777888888888888888888888888 788888888889999999999999999999988 56 888888888999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCC
Q psy630 326 GLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 326 pLh~A~~~~~~~~v~~Ll~~GA 347 (347)
|||+|+..++.+++++|+++|+
T Consensus 114 ~L~~A~~~~~~~~~~~Ll~~g~ 135 (237)
T 3b7b_A 114 PMIWATEYKHVDLVKLLLSKGS 135 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999999988875
No 261
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=119.14 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=70.2
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCC---CCceeEEEEEEcCHHHHHHHHhcCCCccCCccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNT---GLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 79 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t---~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 79 (347)
+.....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|+..- ..++|+.+
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~ 80 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLY 80 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEE
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEE
Confidence 4556789999999999999999999999999999 888888777 799999999999999999999752 23778877
Q ss_pred cccCCCc
Q psy630 80 SIQPSDS 86 (347)
Q Consensus 80 ~v~~~~~ 86 (347)
.+..+.+
T Consensus 81 ~~~~~~~ 87 (114)
T 2dnl_A 81 LCVSSPT 87 (114)
T ss_dssp EEECCSS
T ss_pred EeccCCC
Confidence 7765543
No 262
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-16 Score=111.84 Aligned_cols=79 Identities=22% Similarity=0.464 Sum_probs=71.4
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
..+...++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456778999999999999999999999999999999973 4999999999999999985 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99877544
No 263
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=6.6e-16 Score=127.12 Aligned_cols=83 Identities=28% Similarity=0.461 Sum_probs=76.9
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
+...++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456799999999999999999999999999999999998 89999999999999999999998 599999999999998
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86643
No 264
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-16 Score=116.61 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=71.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4456899999999999999999999999988766 2468999999999999999999999 599999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 877553
No 265
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=7.7e-16 Score=123.56 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=72.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|..|+++++ ++|||||+|.+.++|.+|+. +++..+.|++|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999875 57999999999999999998 499999999999999
Q ss_pred CCccc
Q psy630 84 SDSHN 88 (347)
Q Consensus 84 ~~~~~ 88 (347)
+.++.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 266
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.3e-15 Score=127.53 Aligned_cols=84 Identities=31% Similarity=0.642 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
..++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..++..++|+.|.|.++.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 45799999999999999999999999999999999999899999999999999999999998899999999999999988
Q ss_pred cccc
Q psy630 87 HNRM 90 (347)
Q Consensus 87 ~~~~ 90 (347)
+...
T Consensus 183 k~~~ 186 (196)
T 1l3k_A 183 KQEM 186 (196)
T ss_dssp ----
T ss_pred hhHh
Confidence 6653
No 267
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4e-16 Score=114.55 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=70.6
Q ss_pred CccccCCCeEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CC-CccCCcc
Q psy630 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQ-IMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DS-HVLEGSR 78 (347)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~ 78 (347)
+..+...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+.. ++ ..+.|+.
T Consensus 2 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 2 SSGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 345677889999999999999999999999999 5555552 468999999999999999985 99 9999999
Q ss_pred ccccCCCcccc
Q psy630 79 LSIQPSDSHNR 89 (347)
Q Consensus 79 l~v~~~~~~~~ 89 (347)
|.|.++.++..
T Consensus 75 l~v~~a~~~~~ 85 (93)
T 2cqh_A 75 MEVDYSVSKKL 85 (93)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCccc
Confidence 99999887654
No 268
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.6e-16 Score=112.29 Aligned_cols=79 Identities=28% Similarity=0.489 Sum_probs=71.4
Q ss_pred ccccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 3 NSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+.....++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3456778999999999999999999999999999999873 4999999999999999975 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99877654
No 269
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=9.8e-16 Score=114.74 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=70.7
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.....++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 44567899999999999999999999999999999986 45999999999999999985 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9877654
No 270
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.7e-16 Score=113.46 Aligned_cols=78 Identities=33% Similarity=0.655 Sum_probs=68.9
Q ss_pred cccCCCeEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 4 SIRQLNKIFVGNLPW-TVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
+..+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+.. ++..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 356778999999998 99999999999999999999984 68999999999999999985 999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 98866543
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.61 E-value=3.2e-15 Score=128.87 Aligned_cols=100 Identities=23% Similarity=0.313 Sum_probs=88.0
Q ss_pred cCCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCC----CccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccC-
Q psy630 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDF----NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD- 320 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d- 320 (347)
.+.+..+..+.+++|+|+..+...++++|+. .+. +++..|..|.||||+|+..|+.+++++|++ .|++++..+
T Consensus 70 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~ 147 (241)
T 1k1a_A 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDI 147 (241)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccc
Confidence 3567778889999999998888888888887 444 788889999999999999999999999998 699999998
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 321 SDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 321 ~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
..|.||||+|+..|+.+++++|+++||
T Consensus 148 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 174 (241)
T 1k1a_A 148 KSGRSPLIHAVENNSLSMVQLLLQHGA 174 (241)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 789999999999999999999999886
No 272
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=4.9e-16 Score=126.79 Aligned_cols=81 Identities=37% Similarity=0.710 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~ 86 (347)
..++|||+|||+++++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|+..++..+.|++|.|.++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35689999999999999999999999999999999998899999999999999999999999999999999999999877
Q ss_pred c
Q psy630 87 H 87 (347)
Q Consensus 87 ~ 87 (347)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 273
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=133.93 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=73.8
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+..+++++|++ .+++++.. ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 117 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~ 193 (285)
T 3d9h_A 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPE-SDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTP 193 (285)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCH
T ss_pred CCCCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCH
Confidence 456666777777777777777777777777 66666653 347777888887788888888887 688888888888888
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++||
T Consensus 194 L~~A~~~~~~~~v~~Ll~~ga 214 (285)
T 3d9h_A 194 LYLACENQQRACVKKLLESGA 214 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCcHHHHHHHHHCCC
Confidence 888888888888888887775
No 274
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.61 E-value=2.3e-15 Score=139.05 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=90.2
Q ss_pred CCcccCCCCCcHHHHHHcCC---hHHHHHHHhhcCCCCccc--------cCCCCchHHHHHHHcCCHHHHHHHHhhcCCC
Q psy630 247 DESQLDDNEKNIYEWAKEGK---LDMLVKQLTKLKDFNINQ--------LDENGLNCLHWACDRGHLKVVQHLIEKCGAD 315 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~---~~~~~~lL~~~~~~~~~~--------~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~ 315 (347)
+.+..+..|.|+||+|+..+ ...++++|++ .+++++. .|..|.||||+||..|+.+++++|+++.|++
T Consensus 227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 305 (373)
T 2fo1_E 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305 (373)
T ss_dssp TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH-HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH-CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence 56677889999999998776 8889999888 6888876 6779999999999999999999999843599
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 316 VNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 316 i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
++.+|..|+||||+|+..|+.++|++|+++||
T Consensus 306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337 (373)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999986
No 275
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.8e-15 Score=121.96 Aligned_cols=81 Identities=27% Similarity=0.553 Sum_probs=76.2
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
....++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.|++|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999984 99999999999988
Q ss_pred CC
Q psy630 84 SD 85 (347)
Q Consensus 84 ~~ 85 (347)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 276
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.60 E-value=2.4e-15 Score=138.20 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=84.4
Q ss_pred CCCcHHHHHHcC-ChHHHHHHHhhcCCCCccccC--CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHH
Q psy630 254 NEKNIYEWAKEG-KLDMLVKQLTKLKDFNINQLD--ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330 (347)
Q Consensus 254 ~~~~~l~~a~~~-~~~~~~~lL~~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A 330 (347)
.+.++||+|+.. +...++++|+. .|+++|..+ ..|.||||+||..|+.+++++||+ +|+++|.+|..|+||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHH
Confidence 456789988877 77777777777 799999998 899999999999999999999999 7999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCC
Q psy630 331 KAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 331 ~~~~~~~~v~~Ll~~GA 347 (347)
+..|+.+++++||++||
T Consensus 276 ~~~g~~~~v~~LL~~Ga 292 (368)
T 3jue_A 276 TILGHTGLACLFLKRGA 292 (368)
T ss_dssp HHHTCHHHHHHHHHTTC
T ss_pred HHcCcHHHHHHHHHCcC
Confidence 99999999999999987
No 277
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=2.9e-16 Score=125.02 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=72.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEE--E---eeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNAS--V---MFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR 78 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~--i---~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 78 (347)
....++|||+|||+++|+++|+++|++||.|..+. + ++...+|.++|||||+|.+.++|.+|+.. |+..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 35668999999999999999999999999987641 1 11123689999999999999999999995 999999999
Q ss_pred ccccCCCcccc
Q psy630 79 LSIQPSDSHNR 89 (347)
Q Consensus 79 l~v~~~~~~~~ 89 (347)
|.|.++.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 278
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2e-15 Score=109.30 Aligned_cols=73 Identities=22% Similarity=0.603 Sum_probs=66.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEY----G-------QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHV 73 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~ 73 (347)
.+..++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+.+++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4567899999999999999999999999 8 8999988644 699999999999999999669999
Q ss_pred cCCccccccC
Q psy630 74 LEGSRLSIQP 83 (347)
Q Consensus 74 ~~g~~l~v~~ 83 (347)
+.|+.|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999875
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=112.19 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=70.6
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNA-SVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~-~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
....++|||+|||+++++++|+++|++||.|..+ .++.++.++ .|||+|.+.++|.+|+. +++..+.|++|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 488776543 39999999999999998 59999999999999
Q ss_pred CCCcc
Q psy630 83 PSDSH 87 (347)
Q Consensus 83 ~~~~~ 87 (347)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98775
No 280
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.6e-16 Score=116.90 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=68.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
+..++|||+|||+++++++|+++|++||.|..|.++. ++|||||+|.+.++|++|+.. |+..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999998863 568999999999999999985 999999999999887
Q ss_pred Cc
Q psy630 85 DS 86 (347)
Q Consensus 85 ~~ 86 (347)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 281
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=110.57 Aligned_cols=77 Identities=21% Similarity=0.458 Sum_probs=69.5
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhcc--CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCccccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEY--GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v 81 (347)
....++|||+|||+++++++|+++|++| |.|..+.++ +|||||+|.+.++|.+|+. +++..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4556899999999999999999999999 899988764 5799999999999999998 5999999999999
Q ss_pred cCCCcccc
Q psy630 82 QPSDSHNR 89 (347)
Q Consensus 82 ~~~~~~~~ 89 (347)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99887554
No 282
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.8e-15 Score=124.39 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCcc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSH 87 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~~ 87 (347)
.++|||+|||+++++++|+++|++||.|..|+++++. +|.++|||||+|.+.++|.+|+...+..+.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4899999999999999999999999999999999987 499999999999999999999998667999999999887654
Q ss_pred c
Q psy630 88 N 88 (347)
Q Consensus 88 ~ 88 (347)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 283
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=3.3e-15 Score=122.43 Aligned_cols=80 Identities=24% Similarity=0.525 Sum_probs=75.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3468999999999999999999999999999999999988999999999999999999999985 999999999999876
Q ss_pred C
Q psy630 85 D 85 (347)
Q Consensus 85 ~ 85 (347)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 284
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=106.39 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=65.9
Q ss_pred cccCCCe-EEEeCCCCCCCHHH----HHHHHhcc-CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC
Q psy630 4 SIRQLNK-IFVGNLPWTVSHNE----LKKFFSEY-GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG 76 (347)
Q Consensus 4 ~~~~~~~-l~V~nLp~~~t~~~----l~~~f~~~-G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 76 (347)
...+..+ |||+|||+++++++ |+++|++| |+|..| |+ |+|||+|.+.++|.+|++. ++..+.|
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3444555 99999999999988 55899999 599888 34 9999999999999999985 9999999
Q ss_pred ccccccCCCcccc
Q psy630 77 SRLSIQPSDSHNR 89 (347)
Q Consensus 77 ~~l~v~~~~~~~~ 89 (347)
|+|+|.++..++.
T Consensus 74 r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 NRIIVSFTPKNRE 86 (96)
T ss_dssp SCCEEESSCCSCC
T ss_pred ceEEEEecCCCcc
Confidence 9999999987654
No 285
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.7e-16 Score=111.83 Aligned_cols=79 Identities=23% Similarity=0.502 Sum_probs=68.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccccccCC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPS 84 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~ 84 (347)
....++|||+|||+++++++|+++|++||.|..++++++ ++|||||+|.+.++|+++... ...+.|+.|.|.++
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNA 75 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEec
Confidence 346789999999999999999999999999999999754 689999999999999876443 45668999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=128.48 Aligned_cols=99 Identities=26% Similarity=0.374 Sum_probs=90.1
Q ss_pred CCcccCCCCCcHHHHHH-cCChHHHHHHHhhcCCCCccccCC-CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCC
Q psy630 247 DESQLDDNEKNIYEWAK-EGKLDMLVKQLTKLKDFNINQLDE-NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~-~~~~~~~~~lL~~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~ 324 (347)
+.+..+..+.+++|.|+ .++...++++|.. .+++++..+. .|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 134 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~ 211 (240)
T 3eu9_A 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGE 211 (240)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSC
T ss_pred CccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCC
Confidence 46667788999999988 6666788888888 8999999987 89999999999999999999999 6999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCC
Q psy630 325 YGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 325 TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
||||+|+..|+.+++++|+++|+
T Consensus 212 t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 212 SALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp BHHHHHHHTTCHHHHHHHHHHC-
T ss_pred CHHHHHHHcCcHHHHHHHHHhhh
Confidence 99999999999999999999875
No 287
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.59 E-value=1.1e-15 Score=138.71 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=81.5
Q ss_pred cCCcccCCCCCcHHHHHHcCCh---HHHHHHHhhcCCCCccccCCCCchHHHHHHH----cCCHHHHHHHHhhcCC----
Q psy630 246 NDESQLDDNEKNIYEWAKEGKL---DMLVKQLTKLKDFNINQLDENGLNCLHWACD----RGHLKVVQHLIEKCGA---- 314 (347)
Q Consensus 246 ~~~~~~~~~~~~~l~~a~~~~~---~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~~ga---- 314 (347)
.+++..+..|.||||+|+..++ ..++..|++....+++.+|..|+||||+|+. .|+.+++++|++ .++
T Consensus 155 ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~-~~~~~~~ 233 (327)
T 1sw6_A 155 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-ILMGWIV 233 (327)
T ss_dssp CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH-HHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHH-HHHHHHh
Confidence 4567778888999999888776 3344444442346788889999999999998 889999999987 443
Q ss_pred -----------------------------------------CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 315 -----------------------------------------DVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 315 -----------------------------------------~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
++|.+|..|+||||+|+..|+.++|++||++||
T Consensus 234 ~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga 307 (327)
T 1sw6_A 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307 (327)
T ss_dssp HGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred cccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 588889999999999999999999999999987
No 288
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=3.2e-15 Score=113.34 Aligned_cols=74 Identities=28% Similarity=0.570 Sum_probs=67.6
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 7 QLNKIFVGNLPWT-VSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 7 ~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
..++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|+.. ++..+.|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999998 478999999999999999965 999999999999998
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.+..
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7533
No 289
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.58 E-value=1.4e-15 Score=138.02 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=90.5
Q ss_pred cCCcc-cCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCC---HHHHHHHHhhcCCCccccCC
Q psy630 246 NDESQ-LDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGH---LKVVQHLIEKCGADVNVTDS 321 (347)
Q Consensus 246 ~~~~~-~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~ga~i~~~d~ 321 (347)
.+++. .+..|.||||+|+..+..+++++|++ .|++++.+|..|+||||+|+..|+ .+++..|++..+++++.+|.
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~ 199 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence 35666 78899999999999999999999999 899999999999999999999998 78888888843388999999
Q ss_pred CCCcHHHHHHH----cCCHHHHHHHHhCC
Q psy630 322 DGDYGLDYAKA----IEHTDLIEYLVNSG 346 (347)
Q Consensus 322 ~g~TpLh~A~~----~~~~~~v~~Ll~~G 346 (347)
.|+||||+|+. .|+.+++++|++.|
T Consensus 200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~ 228 (327)
T 1sw6_A 200 MNRTILHHIIITSGMTGCSAAAKYYLDIL 228 (327)
T ss_dssp TCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence 99999999999 99999999999763
No 290
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=5.4e-15 Score=124.00 Aligned_cols=84 Identities=23% Similarity=0.508 Sum_probs=78.8
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999988999999999999999999999985 999999999999998
Q ss_pred Ccccc
Q psy630 85 DSHNR 89 (347)
Q Consensus 85 ~~~~~ 89 (347)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77653
No 291
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=1.9e-15 Score=109.72 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=68.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
+..++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|++|+.. ++..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 5789999999999999999985 999999999999988
Q ss_pred Ccc
Q psy630 85 DSH 87 (347)
Q Consensus 85 ~~~ 87 (347)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 292
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=8.1e-15 Score=124.68 Aligned_cols=83 Identities=25% Similarity=0.529 Sum_probs=78.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999999998999999999999999999999995 999999999999998
Q ss_pred Cccc
Q psy630 85 DSHN 88 (347)
Q Consensus 85 ~~~~ 88 (347)
.++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7754
No 293
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=5.5e-15 Score=125.71 Aligned_cols=81 Identities=27% Similarity=0.543 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+++++++|+++|++||.|..++|++++ +.++|||||+|.+.++|.+|++. |+..+.|++|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999986 55899999999999999999985 9999999999999998
Q ss_pred cccc
Q psy630 86 SHNR 89 (347)
Q Consensus 86 ~~~~ 89 (347)
++..
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7654
No 294
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.56 E-value=1.2e-14 Score=128.82 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=74.6
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCC------ccccCCCCchHHHHHHHc---CCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFN------INQLDENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~------~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.++.++..++...+..++.. +.+ ++..|..|+||||+||.. |+.+++++|++ +|+++|.+|..|+|||
T Consensus 133 ~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~TpL 209 (278)
T 1dcq_A 133 SLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHH
T ss_pred hhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCCHH
Confidence 34445566666665555544 666 455588999999999999 89999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.++|++||++||
T Consensus 210 h~A~~~g~~~~v~~Ll~~ga 229 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKA 229 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999997
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=124.09 Aligned_cols=98 Identities=31% Similarity=0.497 Sum_probs=58.4
Q ss_pred CcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccC-CCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 248 ESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLD-ENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 248 ~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
.+..+..|.++||+|+..+...++++|++ .+.+++..+ ..|.||||+|+..|+.+++++|++ .|++++.++..|.||
T Consensus 35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 35 VRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDGEGCSC 112 (240)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred cCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCH
Confidence 34444556666666666666666666665 455554333 336666666666666666666665 466666666666666
Q ss_pred HHHHHHcCCHHHHHHHHhCCC
Q psy630 327 LDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~~~~~~~~v~~Ll~~GA 347 (347)
||+|+..|+.+++++|+++|+
T Consensus 113 l~~A~~~~~~~~~~~Ll~~~~ 133 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIAKGQ 133 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCHHHHHHHHHhcCC
Confidence 666666666666666666553
No 296
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=7.5e-15 Score=117.50 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=71.0
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC--cccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG--SRLS 80 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~ 80 (347)
.+....+|||+|||+.+|+++|+++|++||.|.+|.|... .++|||||+|.+.++|+.|++. +|..|.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3455668999999999999999999999999999998643 3579999999999999999985 9999965 9999
Q ss_pred ccCCCccc
Q psy630 81 IQPSDSHN 88 (347)
Q Consensus 81 v~~~~~~~ 88 (347)
|.++.++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99987753
No 297
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.56 E-value=6.6e-15 Score=141.16 Aligned_cols=88 Identities=18% Similarity=0.301 Sum_probs=75.6
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCcccc------CCCCchHHHHHHH---cCCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQL------DENGLNCLHWACD---RGHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.++.++..|+...+.. |+. .|+++|.+ |..|+||||+||. .|+.+++++||+ +|+++|.+|..|+|||
T Consensus 135 ~L~~A~~~g~~~~v~~-ll~-~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 135 RLWTAICNRDLLSVLE-AFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHTCHHHHHH-HHH-TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCHH
T ss_pred HHHHHHhccCHHHHHH-HHh-hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcHH
Confidence 3445555666655544 445 48999887 8899999999966 999999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.++|++||++||
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga 231 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRA 231 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999997
No 298
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=5.9e-15 Score=138.25 Aligned_cols=82 Identities=17% Similarity=0.556 Sum_probs=76.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSD 85 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~ 85 (347)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 457999999999999999999999999999999999999999999999999999999999975 9999999999999887
Q ss_pred ccc
Q psy630 86 SHN 88 (347)
Q Consensus 86 ~~~ 88 (347)
+..
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 643
No 299
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=129.84 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=76.2
Q ss_pred cHHHHHHcCChHHHHHHHhhcCCCCccc------cCCCCchHHHHHHHc---CCHHHHHHHHhhcCCCccccCCCCCcHH
Q psy630 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQ------LDENGLNCLHWACDR---GHLKVVQHLIEKCGADVNVTDSDGDYGL 327 (347)
Q Consensus 257 ~~l~~a~~~~~~~~~~lL~~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~ga~i~~~d~~g~TpL 327 (347)
.++.++..++...+..+| . .+.+++. .+..|+||||+||.. ++.+++++||+ +|+++|.+|..|+|||
T Consensus 154 ~L~~A~~~g~~~~v~~ll-~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 154 RLWTAICNRDLLSVLEAF-A-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTAL 230 (301)
T ss_dssp HHHHHHHTTCHHHHHHHH-H-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCCCTTCCCHH
T ss_pred HHhhhhhccCHHHHHHHH-h-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCCCCCCCCHH
Confidence 345555566666555555 4 5889988 689999999999997 89999999999 7999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.+++++||++||
T Consensus 231 h~A~~~g~~~~v~~Ll~~ga 250 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRA 250 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999997
No 300
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.1e-14 Score=112.25 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=70.1
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeE-EEEEEcCHHHHHHHHhc-CCCccCC--ccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGF-GFVTFQNKEAVDKVFST-DSHVLEG--SRL 79 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g--~~l 79 (347)
.+...-+|||+|||+.+|+++|+++|++||.|.+|+++... +|| |||+|.+.++|..|+.. ||..+.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 34566689999999999999999999999999999987642 577 99999999999999986 9999988 889
Q ss_pred cccCCCccc
Q psy630 80 SIQPSDSHN 88 (347)
Q Consensus 80 ~v~~~~~~~ 88 (347)
+|.++.+..
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999987643
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=107.30 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=69.5
Q ss_pred cccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcccccc
Q psy630 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQ 82 (347)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~ 82 (347)
.+...++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999984 5679999999999999999975 9999999999999
Q ss_pred CCCcccc
Q psy630 83 PSDSHNR 89 (347)
Q Consensus 83 ~~~~~~~ 89 (347)
++.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9977654
No 302
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=2.4e-14 Score=116.74 Aligned_cols=79 Identities=29% Similarity=0.601 Sum_probs=73.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCC--cccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEG--SRLSIQ 82 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g--~~l~v~ 82 (347)
...++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. ++..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4567999999999999999999999999999999999998899999999999999999999985 9999988 888887
Q ss_pred CC
Q psy630 83 PS 84 (347)
Q Consensus 83 ~~ 84 (347)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 303
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.54 E-value=9.8e-15 Score=106.89 Aligned_cols=59 Identities=41% Similarity=0.650 Sum_probs=55.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 288 NGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 288 ~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
+|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 59 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 48999999999999999999999 799999999999999999999999999999999986
No 304
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.3e-15 Score=111.94 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=66.4
Q ss_pred cccCCCeEEE--eCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc-----C
Q psy630 4 SIRQLNKIFV--GNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL-----E 75 (347)
Q Consensus 4 ~~~~~~~l~V--~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~-----~ 75 (347)
.....++||| ||||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|+.. ||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 77999999999999999999999998753 368999999999999999985 99887 6
Q ss_pred CccccccCCCc
Q psy630 76 GSRLSIQPSDS 86 (347)
Q Consensus 76 g~~l~v~~~~~ 86 (347)
|++|.|.++..
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 78888877654
No 305
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=7.5e-15 Score=112.15 Aligned_cols=70 Identities=29% Similarity=0.375 Sum_probs=61.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cCCCccCCcccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TDSHVLEGSRLSIQ 82 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 82 (347)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++|+. +|+..+.|+.+.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 45689999999999999999999999999999999765 899999999999999998 49999999994443
No 306
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=3.5e-14 Score=115.49 Aligned_cols=79 Identities=25% Similarity=0.604 Sum_probs=72.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcc--ccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR--LSI 81 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~--l~v 81 (347)
....++|||+|||+++++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|+.. ++..+.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34567899999999999999999999999999999999998999999999999999999999985 999999976 555
Q ss_pred cC
Q psy630 82 QP 83 (347)
Q Consensus 82 ~~ 83 (347)
.+
T Consensus 165 ~~ 166 (167)
T 1fxl_A 165 KF 166 (167)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 307
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=2.9e-14 Score=125.05 Aligned_cols=134 Identities=23% Similarity=0.354 Sum_probs=95.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc--CCCccC---Cccccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST--DSHVLE---GSRLSI 81 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~--~~~~~~---g~~l~v 81 (347)
..++|||+|||+.+|+++|+++|++||.|..|.+++++ +|.++|||||+|.+.++|.+|+.. ++..+. |++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45789999999999999999999999999999999994 899999999999999999999985 555555 899999
Q ss_pred cCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHH
Q psy630 82 QPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSE 161 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~e 161 (347)
.++.+...... ++....... ..+.... ........||.+.+....+|.++.++.....+.
T Consensus 174 ~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~r----~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~ 233 (261)
T 3sde_A 174 EPMEQFDDEDG---------------LPEKLMQKT-QQYHKER----EQPPRFAQPGTFEFEYASRWKALDEMEKQQREQ 233 (261)
T ss_dssp EECCCEESSSC---------------CCGGGSCCC-HHHHHHH----TSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCccCC---------------Ccchhhhcc-hhhhhhc----cCCCCCCCCCcccccccchHHHHHHHHHHHHHH
Confidence 98876543111 111000000 1111111 112344567888887788888887754433333
No 308
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=5.3e-14 Score=115.41 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=71.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC---Cccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE---GSRLSI 81 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~l~v 81 (347)
...++|||+|||+++|+++|+++|++||.|..+++++++ +|.++|||||+|.+.++|.+|+.. ++..+. |++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356799999999999999999999999999999999996 599999999999999999999975 887665 489999
Q ss_pred cCCC
Q psy630 82 QPSD 85 (347)
Q Consensus 82 ~~~~ 85 (347)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 8763
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=5.3e-14 Score=107.99 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=66.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeE-EEEEEcCHHHHHHHHhc-CCCccCC--ccccc
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGF-GFVTFQNKEAVDKVFST-DSHVLEG--SRLSI 81 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g--~~l~v 81 (347)
.....|||+|||+.+++++|+++|++||.|..|+|.. + .|| |||+|.+.++|..|+.. ||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3444678999999999999999999999999999865 2 276 99999999999999985 9999988 58999
Q ss_pred cCCCccc
Q psy630 82 QPSDSHN 88 (347)
Q Consensus 82 ~~~~~~~ 88 (347)
.++.++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9987654
No 310
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=5.7e-14 Score=105.04 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=72.3
Q ss_pred ccCCCeEEEeCCCC-----CCCHHHHHHHHhccCCeeEEEEeeeCCC-CCceeEEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 5 IRQLNKIFVGNLPW-----TVSHNELKKFFSEYGQIMNASVMFDKNT-GLSKGFGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 5 ~~~~~~l~V~nLp~-----~~t~~~l~~~f~~~G~i~~~~i~~~~~t-~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
+...+.|+|+||.. +-++++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+.. ||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46678999999963 2378999999999999999999998754 68999999999999999999985 99999999
Q ss_pred cccccCCCc
Q psy630 78 RLSIQPSDS 86 (347)
Q Consensus 78 ~l~v~~~~~ 86 (347)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998865
No 311
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=5.4e-14 Score=108.19 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=69.0
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~ 83 (347)
+...++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999985 4679999999999999999975 99999999999999
Q ss_pred CCcccc
Q psy630 84 SDSHNR 89 (347)
Q Consensus 84 ~~~~~~ 89 (347)
+.++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 877543
No 312
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=7.2e-14 Score=114.80 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=69.9
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPS 84 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~ 84 (347)
...++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999987665 45799999999999999999999995 999999999999998
Q ss_pred Ccc
Q psy630 85 DSH 87 (347)
Q Consensus 85 ~~~ 87 (347)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 313
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.45 E-value=5.9e-15 Score=136.04 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=80.2
Q ss_pred CCCCCcHHHHHHcCChHHHHHHHhhcCCCCc---cccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccc--cCCCCCcH
Q psy630 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNI---NQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNV--TDSDGDYG 326 (347)
Q Consensus 252 ~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~--~d~~g~Tp 326 (347)
+..+.++||+|+..++.+++++|++ .|+++ +..+.+ .||||+||.+||.+++++|++ +|++++. +|..|.||
T Consensus 125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~-~ga~~~~~~~d~~g~Tp 201 (376)
T 2aja_A 125 QAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAENYYA 201 (376)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH-cCCccchhccCCCCCCH
Confidence 3456789999999999999999998 67642 222223 999999999999999999999 7999988 88999999
Q ss_pred HHHHH-HcCCHHHHHHHHhCCC
Q psy630 327 LDYAK-AIEHTDLIEYLVNSGS 347 (347)
Q Consensus 327 Lh~A~-~~~~~~~v~~Ll~~GA 347 (347)
||+|+ ..|+.++|++|+++|+
T Consensus 202 L~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 202 FRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp HHHHHSTTCCHHHHHHHTTSHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCC
Confidence 99999 9999999999998763
No 314
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.45 E-value=1.4e-13 Score=104.03 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=58.5
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q psy630 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 280 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~GA 347 (347)
..+...|.+|.||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++||
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga 81 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3456678899999999999999999999999 799999999999999999999999999999999986
No 315
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=1.2e-13 Score=117.93 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=68.7
Q ss_pred ccCCCeEEEeCCCCCC---------CHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCcc
Q psy630 5 IRQLNKIFVGNLPWTV---------SHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVL 74 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~ 74 (347)
....++|||+|||+.+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++. ++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 479999999999999999985 88888
Q ss_pred ------------CCccccccCCCcccc
Q psy630 75 ------------EGSRLSIQPSDSHNR 89 (347)
Q Consensus 75 ------------~g~~l~v~~~~~~~~ 89 (347)
.|+.|.|.++.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 316
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-12 Score=98.81 Aligned_cols=83 Identities=22% Similarity=0.397 Sum_probs=69.9
Q ss_pred ccccCCCeEEEeCCCCCCC-----------HHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHh-cC
Q psy630 3 NSIRQLNKIFVGNLPWTVS-----------HNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS-TD 70 (347)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t-----------~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~-~~ 70 (347)
..+...++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+. +|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4567789999999944332 5799999999999999966 443 379999999999999999997 49
Q ss_pred CCccCCccccccCCCcccc
Q psy630 71 SHVLEGSRLSIQPSDSHNR 89 (347)
Q Consensus 71 ~~~~~g~~l~v~~~~~~~~ 89 (347)
+..+.|++|.|.++.++..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999877543
No 317
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.36 E-value=2e-13 Score=125.78 Aligned_cols=91 Identities=14% Similarity=0.163 Sum_probs=72.7
Q ss_pred CCCcHHHHHHcCChHHHHHHHhhcCCCC---ccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCC---ccccCCCCCcHH
Q psy630 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFN---INQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD---VNVTDSDGDYGL 327 (347)
Q Consensus 254 ~~~~~l~~a~~~~~~~~~~lL~~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~---i~~~d~~g~TpL 327 (347)
.+.|+||+|+..+..+++++|+. .+.. .+..+..|.||||+||.+||.+++++|++ +|++ ++..+.+ .|||
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~~~~-~TpL 167 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAEN-YHAF 167 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHH-HHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccCCCC-CCHH
Confidence 34599999998888889999988 5552 22345578999999999999999999999 7976 2333333 9999
Q ss_pred HHHHHcCCHHHHHHHHhCCC
Q psy630 328 DYAKAIEHTDLIEYLVNSGS 347 (347)
Q Consensus 328 h~A~~~~~~~~v~~Ll~~GA 347 (347)
|+|+..|+.++|++|+++||
T Consensus 168 h~Aa~~G~~eiv~~Ll~~ga 187 (376)
T 2aja_A 168 RLAAENGHLHVLNRLCELAP 187 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCG
T ss_pred HHHHHCCCHHHHHHHHHcCC
Confidence 99999999999999999986
No 318
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.35 E-value=2.5e-13 Score=101.40 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=62.4
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccc
Q psy630 13 VGNLPWTVSHNELKKFF------------SEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRL 79 (347)
Q Consensus 13 V~nLp~~~t~~~l~~~f------------~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 79 (347)
+.|||+.+++++|++.| ++||.|.+|.|++++. ++++|||||+|.+.++|.+|+.. ||..+.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 9999999999998874 89999999999999999999985 9999999999
Q ss_pred cccCC
Q psy630 80 SIQPS 84 (347)
Q Consensus 80 ~v~~~ 84 (347)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99765
No 319
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.35 E-value=8.1e-13 Score=100.44 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCcccCCCCCcHHHHHHcCChHHHHHHHhhcCCCCccccCCCCchHHHHHHHcCCHHHHHHHHhhcCCCccccCCCCCcH
Q psy630 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYG 326 (347)
Q Consensus 247 ~~~~~~~~~~~~l~~a~~~~~~~~~~lL~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ga~i~~~d~~g~Tp 326 (347)
+.+..+..|.|+||+|+..+...++++|++ .+++++.+|..|+||||+|+..++.+++++|++ +|+++|.++..|.||
T Consensus 34 ~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHH 111 (115)
T ss_dssp CSSCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence 456677889999999999999999999999 799999999999999999999999999999999 799999999999998
Q ss_pred H
Q psy630 327 L 327 (347)
Q Consensus 327 L 327 (347)
-
T Consensus 112 ~ 112 (115)
T 2l6b_A 112 H 112 (115)
T ss_dssp -
T ss_pred c
Confidence 4
No 320
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.34 E-value=9e-13 Score=111.09 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=62.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCe--eEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCcc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQI--MNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSR 78 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i--~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 78 (347)
.++|||+|||+++|+++|+++|++||.| .+++++.++ +.++|||||+|.+.++|.+|+.. |+..+.|+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 4689999999999999999999999999 899998775 56679999999999999999985 999998873
No 321
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=2.6e-12 Score=113.86 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=68.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC-CccccccC
Q psy630 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-GSRLSIQP 83 (347)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~v~~ 83 (347)
...++|||+|||+++++++|+++|++||.|..++++.++ +|||||+|.+.++|.+|+.. ++..+. |+.|+|.+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356789999999999999999999999999999998654 58999999999999999985 999999 99999988
Q ss_pred CC
Q psy630 84 SD 85 (347)
Q Consensus 84 ~~ 85 (347)
+.
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 74
No 322
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2e-11 Score=90.03 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcccc
Q psy630 8 LNKIFVGNLP-------WTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRLS 80 (347)
Q Consensus 8 ~~~l~V~nLp-------~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 80 (347)
.++|-|.-.+ .++++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..|+.. ...+.|++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 4567666554 468999999999999999999997 46789999999999999999987 4446899999
Q ss_pred ccCCCcccc
Q psy630 81 IQPSDSHNR 89 (347)
Q Consensus 81 v~~~~~~~~ 89 (347)
|.++.++..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999877543
No 323
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.30 E-value=3.2e-12 Score=107.07 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=68.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC-CccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-GSRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~v~~ 83 (347)
..++|||+|||+.+++++|+++|++|| .|..++++.+ ++|||||+|.+.++|.+|+.. ++..+. |++|.|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 468899999999999999999999999 9999999653 268999999999999999985 999999 99999998
Q ss_pred CCc
Q psy630 84 SDS 86 (347)
Q Consensus 84 ~~~ 86 (347)
+.+
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 765
No 324
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=2.9e-12 Score=95.77 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCeEEEeCC--CCCCC--------HHHHHHHHhccCCeeEEEEeeeCCC--CCceeEEEEEEcCHHHHHHHHhc-CCCc
Q psy630 7 QLNKIFVGNL--PWTVS--------HNELKKFFSEYGQIMNASVMFDKNT--GLSKGFGFVTFQNKEAVDKVFST-DSHV 73 (347)
Q Consensus 7 ~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~t--~~~~g~afV~f~~~~~a~~a~~~-~~~~ 73 (347)
.++.|.+.|+ |.+.. +++|++.|++||.|.+|.|++++.+ +.++|+|||+|.+.++|.+|+.. ||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678899998 44443 3689999999999999999988764 36899999999999999999985 9999
Q ss_pred cCCccccccCCCc
Q psy630 74 LEGSRLSIQPSDS 86 (347)
Q Consensus 74 ~~g~~l~v~~~~~ 86 (347)
+.||.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999987654
No 325
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.29 E-value=6.6e-12 Score=107.80 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=68.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC-CccccccC
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEYG-QIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE-GSRLSIQP 83 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~-g~~l~v~~ 83 (347)
..++|||+|||+++++++|+++|++|| .|..++++.+ ++|||||+|.+.++|.+|+.. ++..+. |+.|.|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 358899999999999999999999999 9999999643 368999999999999999984 999999 99999998
Q ss_pred CCc
Q psy630 84 SDS 86 (347)
Q Consensus 84 ~~~ 86 (347)
+.+
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 865
No 326
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=8.9e-12 Score=94.92 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=69.6
Q ss_pred cCCCeEEEeCCC--CCC---CHHHHHHHHhccCCeeEEEEeeeCC----CCCceeEEEEEEcCHHHHHHHHhc-CCCccC
Q psy630 6 RQLNKIFVGNLP--WTV---SHNELKKFFSEYGQIMNASVMFDKN----TGLSKGFGFVTFQNKEAVDKVFST-DSHVLE 75 (347)
Q Consensus 6 ~~~~~l~V~nLp--~~~---t~~~l~~~f~~~G~i~~~~i~~~~~----t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 75 (347)
...+.|+++|+- .++ -+++|++.|++||.|.+|.|++++. ++.++|++||+|.+.++|.+|+.. ||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 357899999993 222 3689999999999999999999865 467889999999999999999985 999999
Q ss_pred CccccccCCCc
Q psy630 76 GSRLSIQPSDS 86 (347)
Q Consensus 76 g~~l~v~~~~~ 86 (347)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999987654
No 327
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=3.6e-11 Score=108.16 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=63.8
Q ss_pred cccCCCeEEEeC--CCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccC---Cc
Q psy630 4 SIRQLNKIFVGN--LPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLE---GS 77 (347)
Q Consensus 4 ~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~ 77 (347)
....+++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++. ||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456778999999 589999999999999999999987743 479999999999999999985 998873 44
Q ss_pred --cccccCCC
Q psy630 78 --RLSIQPSD 85 (347)
Q Consensus 78 --~l~v~~~~ 85 (347)
.+.|.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 46666654
No 328
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=77.62 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=61.7
Q ss_pred CCCeEEEeCCC----CCCCH----HHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCcc
Q psy630 7 QLNKIFVGNLP----WTVSH----NELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSR 78 (347)
Q Consensus 7 ~~~~l~V~nLp----~~~t~----~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 78 (347)
...||+|.-.| ..... .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+.++|..+.||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 45678888877 23434 5789999999999999998764 89999999999999999999999999
Q ss_pred ccccCCCc
Q psy630 79 LSIQPSDS 86 (347)
Q Consensus 79 l~v~~~~~ 86 (347)
|+|+.+.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998865
No 329
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=9e-10 Score=83.17 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=63.9
Q ss_pred ccCCCeEEEeCCCCCC----------CHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCc
Q psy630 5 IRQLNKIFVGNLPWTV----------SHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHV 73 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~ 73 (347)
+..++.|.+.|+=..- -+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|+.. ||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567788888882221 124789999999999999997653 589999999999999999985 9999
Q ss_pred cCCccccccCCCc
Q psy630 74 LEGSRLSIQPSDS 86 (347)
Q Consensus 74 ~~g~~l~v~~~~~ 86 (347)
+.||.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999988753
No 330
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.92 E-value=1.9e-10 Score=92.65 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=75.2
Q ss_pred EEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CC-CccCCccccccCCCccc------ccchhhhhhcccccccccCC
Q psy630 37 NASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DS-HVLEGSRLSIQPSDSHN------RMAENMEDRFNQACDYLPSL 108 (347)
Q Consensus 37 ~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g~~l~v~~~~~~~------~~~~~~~~~f~~~~~~v~~l 108 (347)
.+.|+.+. .+++|||||+|.+.++|++|+.. ++ ..+.|.. .+....... .............++||+||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 46677775 46899999999999999999964 32 2222221 111111100 00001111234578999999
Q ss_pred cccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 109 VKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 109 ~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
|..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.++|.++
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 128 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRY-----TKESRGFAFVR--FHDKRDAEDA 128 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSS-----CTTSCCEEEEE--ESBHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 99999999999999999998777765532 23344445444 3456677666
No 331
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.4e-09 Score=80.14 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=62.6
Q ss_pred cCCCeEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcC-HHHHHHHHhc---CCCccCCcccc
Q psy630 6 RQLNKIFVGNLPWT-VSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQN-KEAVDKVFST---DSHVLEGSRLS 80 (347)
Q Consensus 6 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~-~~~a~~a~~~---~~~~~~g~~l~ 80 (347)
....-|||+|||++ ++.++|+++|++||.|..|.++++.. .|||.|.+ .++|..|+.. ++..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45678999999999 99999999999999999999987764 59999999 7888888863 67888887777
Q ss_pred ccCCC
Q psy630 81 IQPSD 85 (347)
Q Consensus 81 v~~~~ 85 (347)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 65443
No 332
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=5.1e-09 Score=74.54 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCCeEEEeCCCCC-----CCH----HHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCc
Q psy630 7 QLNKIFVGNLPWT-----VSH----NELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGS 77 (347)
Q Consensus 7 ~~~~l~V~nLp~~-----~t~----~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 77 (347)
...||+|.-+++. +.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+.+++..+.||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4568999988753 222 4688999999999999998774 9999999999999999999999999
Q ss_pred cccccCCCc
Q psy630 78 RLSIQPSDS 86 (347)
Q Consensus 78 ~l~v~~~~~ 86 (347)
.|+|+...+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999987654
No 333
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.59 E-value=8.4e-09 Score=82.19 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=69.6
Q ss_pred CCceeEEEEEEcCHHHHHHHHh-c-CCCccCCccccccCCCcccccc---------hhhhhhcccccccccCCcccccch
Q psy630 47 GLSKGFGFVTFQNKEAVDKVFS-T-DSHVLEGSRLSIQPSDSHNRMA---------ENMEDRFNQACDYLPSLVKKLDSS 115 (347)
Q Consensus 47 ~~~~g~afV~f~~~~~a~~a~~-~-~~~~~~g~~l~v~~~~~~~~~~---------~~~~~~f~~~~~~v~~l~~~~~~e 115 (347)
..-+|+++|+|.+.++|++|+. + |+..+.| .+.+.++....... ..........++||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 4568999999999999999996 5 8999999 89998876532211 111222345789999999999999
Q ss_pred hhHHHHhhccccceecccCC
Q psy630 116 TLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 116 ~l~~~f~~fg~v~~g~~~~~ 135 (347)
+|+++|+.||.|....+..+
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS
T ss_pred HHHHHHHhhCCEEEEEEeeC
Confidence 99999999999987766554
No 334
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=9.7e-08 Score=81.19 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=59.1
Q ss_pred CCHHHHHHHHhccCCeeEEEEeeeCC----CCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCc
Q psy630 20 VSHNELKKFFSEYGQIMNASVMFDKN----TGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDS 86 (347)
Q Consensus 20 ~t~~~l~~~f~~~G~i~~~~i~~~~~----t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~ 86 (347)
-.+++|++.|++||.|.++.|+++.. ++.++|++||+|.+.++|.+|+.. +|..+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45678999999999999999986654 458999999999999999999985 99999999999988753
No 335
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-05 Score=58.07 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=73.6
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhc-----cCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCCccc
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSE-----YGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEGSRL 79 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-----~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 79 (347)
..-.++|.|.|||+.+.++.|.-+|+. -|+|..++... +-|+|+|.+...|++.++...+.++|..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 445679999999999999999999976 25677776532 46899999999999999988899999999
Q ss_pred cccCCCcccccchhhhhhcccccccccCCcccccc
Q psy630 80 SIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDS 114 (347)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~ 114 (347)
.|.+..+.. ..++++.+|++.++.
T Consensus 77 sV~P~~~~~-----------~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 77 SLRPAPPRA-----------PARLLLQGLPPGTSG 100 (104)
T ss_dssp EEEECCCCC-----------CCCCCCCSCCCCCCC
T ss_pred EEEcCCCCC-----------cceEeeecCCCCCCC
Confidence 998765533 356789999877654
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.08 E-value=2.1e-07 Score=86.99 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=44.3
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..+|||+|||..+++++|..+|+.||.|....+..++. .++.|+.||+. +.+.++|..+
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~kG~aFV~--F~~~e~A~~A 160 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-----SGKPRGYAFIE--YEHERDMHSA 160 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-----CCCccceEEEe--eccHHHHHHH
Confidence 36899999999999999999999999998777655432 34556666665 3445666555
No 337
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.8e-05 Score=56.44 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=62.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHhcc-----CCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHH-hcCCCccCCcccc
Q psy630 7 QLNKIFVGNLPWTVSHNELKKFFSEY-----GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF-STDSHVLEGSRLS 80 (347)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~-~~~~~~~~g~~l~ 80 (347)
..++|-+=|||..+++..++.+.+++ |.+..+.+..|- +-|+|+|.+...|-+|. ..+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46888899999999999999999999 999999987764 46999999988777666 5699999999998
Q ss_pred ccC
Q psy630 81 IQP 83 (347)
Q Consensus 81 v~~ 83 (347)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 338
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.86 E-value=2.3e-06 Score=66.59 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=46.1
Q ss_pred eEEEEEEcCHHHHHHHHhc-CCCccCCccccccCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhccccce
Q psy630 51 GFGFVTFQNKEAVDKVFST-DSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATV 129 (347)
Q Consensus 51 g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~ 129 (347)
-++|.+|.+...+..|+.. ++....|+. .+....+.. ..-...++||+|||..+++++|+++|+.||.|..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~-------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPP-------DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp -------------------------------CCSCCSCS-------SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCC-------CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 3677788888888888875 655555543 222222211 1224578999999999999999999999999987
Q ss_pred ecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 130 GQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 130 g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..+..++. .++.|+.||.. ..+.++|.++
T Consensus 77 v~i~~~~~-----~g~~~G~afV~--F~~~~~A~~A 105 (135)
T 2lea_A 77 VYIPRDRY-----TKESRGFAFVR--FHDKRDAEDA 105 (135)
T ss_dssp EECCCCSS-----SSSCCSCCEEE--CSCHHHHHHH
T ss_pred EEEEecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 77765432 12333344443 4456677665
No 339
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.86 E-value=8.5e-07 Score=65.09 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=46.0
Q ss_pred hcccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 97 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 97 ~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.+...++||+|||..+++++|+++|+.||+|....+..++. .|+.|+.||.. ..+.++|.++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~kG~afV~--f~~~~~A~~A 77 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-----AGHSLGYGFVN--YVTAKDAERA 77 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----SCCEEEEEEEE--ESSHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-----CCcccccEEEE--ECCHHHHHHH
Confidence 35667899999999999999999999999998877765543 23334444443 4467777776
No 340
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.68 E-value=3.2e-06 Score=60.88 Aligned_cols=58 Identities=14% Similarity=-0.053 Sum_probs=42.4
Q ss_pred ccccccCCcccccchhhHHHHhhcc-ccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYK-QATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg-~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.++||+|||..+++++|+++|+.|| .+....+..++. .|+.|+.|+.. ..+.++|.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~-----t~~~rg~aFV~--F~~~~~A~~A 60 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS-----SGQSRGFAFVE--FSHLQDATRW 60 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS-----SCCCSSEEEEE--CSSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC-----CCCcCceEEEE--ecCHHHHHHH
Confidence 4789999999999999999999999 787666655432 23334444443 4567777776
No 341
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.55 E-value=4.3e-06 Score=60.70 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=42.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
-.++||+|||+.+++++|+++|+.||.+....|...+. ...|+.|+.||.. ..+.++|.++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d---~~tg~srG~aFV~--f~~~~~A~~A 69 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD---KQTQQNRGFAFVQ--LSSAMDASQL 69 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC---SSSSSCSSEEEEE--CSSSHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec---CCCCCCceEeEEE--ECCHHHHHHH
Confidence 36899999999999999999999999765555554321 0134455555554 4456666655
No 342
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.41 E-value=9.4e-06 Score=60.66 Aligned_cols=59 Identities=10% Similarity=-0.067 Sum_probs=44.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+||+..+++++|+++|+.||.|....+..++. .++.|+.||.. ..+.++|.++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~-----tg~~rG~aFV~--f~~~~~A~~A 64 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR-----TRKHLGLARVL--FTSTRGAKET 64 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC-----CCceeeEEEEE--ECCHHHHHHH
Confidence 46799999999999999999999999999877765542 23444445544 4457777666
No 343
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.41 E-value=2.1e-05 Score=58.00 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=40.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|+...+..+ |+.||.+ ..+.++|..+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------kGfaFVe--F~~~~~A~~A 68 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------KNQAFIE--MNTEEAANTM 68 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------TTEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------CCEEEEE--ECCHHHHHHH
Confidence 3468999999999999999999999999987666543 2334443 3346666666
No 344
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.37 E-value=0.00078 Score=47.84 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=54.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCC--ceeEEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGL--SKGFGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~--~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
++|.|++||+.+|++++.+.+..+..+........+.+.+ ..+-|||.|.+.+++..-... +|+.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999888776666665544333 235699999999888877765 88877543
No 345
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.37 E-value=1.4e-05 Score=62.35 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=42.2
Q ss_pred eEEEEEEcCHHHHHHHHhcCCCccCCccccccCCCcccccchhhhhhcccccccccCCcccccchhhHHHHhhcccccee
Q psy630 51 GFGFVTFQNKEAVDKVFSTDSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVG 130 (347)
Q Consensus 51 g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g 130 (347)
|+||..|.....+..+.........|....-..... ......-...++||+|||..+++++|+++|+.|| +...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~-----~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v 75 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDS-----EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRV 75 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEE
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCc-----ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEE
Confidence 577888877776666554322223332221111000 1111223456899999999999999999999999 5555
Q ss_pred cccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 131 QCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 131 ~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
.+..++. ++.|..||.. ..+.++|.++.
T Consensus 76 ~i~~d~~------g~srGfaFV~--F~~~e~A~~Al 103 (139)
T 2hgn_A 76 HIEIGPD------GRVTGEADVE--FATHEEAVAAM 103 (139)
T ss_dssp ECCCSSS------SCSSCCCEEE--CSHHHHHHHHT
T ss_pred EEEECCC------CCCceEEEEE--eCCHHHHHHHH
Confidence 5544432 4555555554 34566776663
No 346
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.30 E-value=2.6e-05 Score=53.59 Aligned_cols=57 Identities=5% Similarity=0.053 Sum_probs=40.7
Q ss_pred cccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 102 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 102 ~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
++||+|||..+++++|+++|+.||.+....+..++. .++.|+.||.. ..+.++|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~a 57 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT-----TNRHRGFGFVT--FESEDIVEKV 57 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS-----STTSCBEEEEE--CSCHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcCcEEEEE--ECCHHHHHHH
Confidence 479999999999999999999999998777665542 23334444444 3345666544
No 347
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.29 E-value=2e-05 Score=54.24 Aligned_cols=57 Identities=5% Similarity=0.061 Sum_probs=39.9
Q ss_pred cccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 102 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 102 ~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
++||+|||..+++++|+++|+.||.+....+..++. .++.|+.||.. ..+.++|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 57 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-----TNKRRGFCFIT--FKEEEPVKKI 57 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-----CSSSCCCEEEE--CSSSHHHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCcCCEEEEE--ECCHHHHHHH
Confidence 479999999999999999999999998766655432 12333344444 3345555555
No 348
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.00089 Score=49.79 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=59.4
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcCCCccCC-ccccccC
Q psy630 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTDSHVLEG-SRLSIQP 83 (347)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~~~~~~g-~~l~v~~ 83 (347)
....+.|-|-+.|+.. ...+..+|++||.|.+.... ....+-+|.|.++.+|++|+..||..+.| -.|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3456788899999996 55678899999999988762 12468999999999999999999999985 5566666
Q ss_pred CC
Q psy630 84 SD 85 (347)
Q Consensus 84 ~~ 85 (347)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 349
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.28 E-value=1.7e-05 Score=56.81 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=39.5
Q ss_pred ccccccCCcccccchhhHHHHhhcc--ccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYK--QATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg--~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.++||+|||..+++++|+++|+.|| .+....+..++. .|+.|+.|+.. ..+.++|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-----~g~~kG~afV~--f~~~~~a~~A 61 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----NGQSKGFALVG--VGSEASSKKL 61 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-----TCCEEEEEEEC--C-CHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-----CCccCcEEEEE--ECCHHHHHHH
Confidence 4789999999999999999999999 777666655432 23334444443 4456666655
No 350
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.28 E-value=1.7e-05 Score=63.84 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=42.9
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...+|||+|||..+++++|..+|+.||.|....+..++. .|+.|+.||.. ..+.++|..+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 130 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----TGFSKGYALVE--YETHKQALAA 130 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TSSEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-----CCcEeeEEEEE--ECCHHHHHHH
Confidence 346799999999999999999999999998777765532 22333334443 3456666665
No 351
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.24 E-value=2.4e-05 Score=55.18 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+....+..++. .++.|..||.. ..+.++|..+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 65 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----TEKHRGFAFVE--FELAEDAAAA 65 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT-----TTEECSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC-----CCccccEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998766654422 22333334443 3456666665
No 352
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=5.2e-05 Score=57.24 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=40.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..+ |..||.+ ..+.++|..+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------kG~AFVe--F~~~e~A~~A 83 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------KNQAFIE--MNTEEAANTM 83 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------GTEEEEE--CSCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------CCEEEEE--ECCHHHHHHH
Confidence 3468999999999999999999999999987665432 3334443 3456666655
No 353
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.21 E-value=1.9e-05 Score=57.89 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=44.1
Q ss_pred cccccccCCcc------cccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVK------KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~------~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||. .+++++|+++|+.||.|....+..++. .|+.|+.|+.. ..+.++|.++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~-----tg~~kG~afV~--f~~~~~A~~A 70 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA-----TGKTKGFLFVE--CGSMNDAKKI 70 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT-----TTEECSEEEEE--ESSHHHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 35799999999 999999999999999999777665543 24455545544 4457777766
No 354
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=3.5e-05 Score=53.20 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=40.0
Q ss_pred cccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 102 CDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 102 ~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
++||+|||..+++++|+++|+.||.+....+..++. .|+.|+.||..+ .+.++|.++
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----~~~~~g~afV~f--~~~~~a~~a 58 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-----TKRSRGFGFVTF--MDQAGVDKV 58 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC-----SSSCSSEEEECC--CCTTHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC-----CCCcCceEEEEE--cCHHHHHHH
Confidence 689999999999999999999999998766655432 123344444443 345555544
No 355
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=4.5e-05 Score=55.88 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=43.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||. ...+.++|..+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV--~f~~~~~A~~A 70 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----TEKHRGFAFV--EFELAEDAAAA 70 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS-----SCCCSSEEEE--CCSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC-----CCCcceEEEE--EECCHHHHHHH
Confidence 457899999999999999999999999998776655432 1223333443 34567777666
No 356
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.19 E-value=3.4e-05 Score=57.33 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=43.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.++|.++
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--F~~~~~A~~A 84 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-----TGRSKGYGFIT--FSDSECAKKA 84 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT-----TTEEEEEEEEE--ESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 446899999999999999999999999998766655432 23334444444 3456777665
No 357
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.19 E-value=3.3e-05 Score=57.04 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=43.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 71 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF-----TGMHKGCAFLT--YCERESALKA 71 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS-----SCSCCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----CCCcceEEEEE--ECCHHHHHHH
Confidence 456899999999999999999999999998777765432 22333344443 3456677665
No 358
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.18 E-value=2.1e-05 Score=59.20 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=42.2
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|....+..++. +.|+.||.. ..+.++|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------~~kg~afV~--f~~~~~A~~A 61 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------GSKGYGFVH--FETQEAAERA 61 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------EEEEEEEEE--ESCHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------CCCceEEEE--ECCHHHHHHH
Confidence 35799999999999999999999999998777655432 123334443 4567777766
No 359
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.17 E-value=0.00027 Score=51.44 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=30.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||..+++++|+++|+.||+|+...+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~ 54 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM 54 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE
Confidence 34689999999999999999999999999876554
No 360
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.16 E-value=4.2e-05 Score=55.43 Aligned_cols=58 Identities=16% Similarity=0.061 Sum_probs=42.3
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.++|.++
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 60 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ-----TGRSKGYAFIE--FRDLESSASA 60 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-----TCCBCSEEEEE--ESSHHHHHHH
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 5789999999999999999999999998777665532 22334444443 3456677665
No 361
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=4.5e-05 Score=55.86 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=43.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 70 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE-----TQRSRGFGFVT--FENIDDAKDA 70 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS-----SCSCCSEEEEE--CSSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCCcccEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998777765432 12223334433 4456777666
No 362
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.14 E-value=5.3e-05 Score=58.38 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=41.7
Q ss_pred cccccccccCCcccccchhhHHHHhhccccce--ecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATV--GQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~--g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
....++||+|||..+++++|+++|+.||.|.. ..+..++. .|+.|+.||..+ .+. +|.++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~-----tg~~rG~aFV~f--~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ-----TQLNRGFAFIQL--STI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS-----SSSBCSCEEEEC--CHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC-----CCCcceEEEEEE--CCH-HHHHH
Confidence 34578999999999999999999999999976 44544431 234444455443 334 55554
No 363
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.12 E-value=3.1e-05 Score=54.88 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=42.4
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.+....+..++. .++.|+.||.. ..+.++|..+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 64 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA-----TGKSKGYGFVS--FFNKWDAENA 64 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999998776655432 22333334444 3456666665
No 364
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.11 E-value=4.6e-05 Score=56.70 Aligned_cols=60 Identities=8% Similarity=0.095 Sum_probs=43.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||..+ .+.++|.++
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-----tg~~kg~afV~f--~~~~~A~~A 83 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-----TKRSRGFGFVTF--MDQAGVDKV 83 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT-----TCCCTTCEEEEE--SSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC-----CCCcCcEEEEEE--CCHHHHHHH
Confidence 457899999999999999999999999998777665432 234444555543 356666665
No 365
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=3.9e-05 Score=55.88 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=42.9
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 66 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-----TKKPKGFAFVT--FMFPEHAVKA 66 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT-----TCCCCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-----CCCcCeEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998777765542 12233334443 3456666665
No 366
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=4.4e-05 Score=55.22 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=41.8
Q ss_pred cccccccCCcccccchhhHHHHhhcccccee-cccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVG-QCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g-~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|... .+..++. .++.|..||.. ..+.++|.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 64 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD-----TGNSKGYAFIN--FASFDASDAA 64 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT-----TCSCCSEEEEE--BSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC-----CCCcCeEEEEE--ECCHHHHHHH
Confidence 4689999999999999999999999999866 5554422 22333334443 3456677666
No 367
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=5.2e-05 Score=56.44 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=42.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 73 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-----TEHSKGCAFAQ--FMTQEAAQKC 73 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----SCCBCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCCccEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998777765532 12233334433 3456666665
No 368
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.08 E-value=2.2e-05 Score=55.79 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=42.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+....+..++. .|+.|+.||.. ..+.++|.++
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 69 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-----TGRSRGFGFIL--FKDAASVEKV 69 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----TCCEEEEEEEE--ESSTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-----CCccccEEEEE--ECCHHHHHHH
Confidence 456899999999999999999999999998777665432 22333344444 3345566554
No 369
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.07 E-value=2.9e-05 Score=54.80 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=42.5
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
..++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A~ 64 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT-----TNKCKGYGFVD--FDSPSAAQKAV 64 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS-----SCSCCSEEEEE--ESCHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCcCcEEEEE--ECCHHHHHHHH
Confidence 46899999999999999999999999998777665532 12233334433 34566666653
No 370
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=5.8e-05 Score=55.78 Aligned_cols=61 Identities=3% Similarity=0.028 Sum_probs=43.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..+.+ ..++.|+.||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----~~~~~~g~afV~--f~~~~~a~~A 74 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT----GTGAHRGFGFVD--FITKQDAKKA 74 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCS----SSCSSCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCC----CCCCcCceEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777655520 022233334433 4456677665
No 371
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.07 E-value=0.0016 Score=46.25 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=43.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~ 69 (347)
.||+=++|+.+...+|.++|+.||. ..|+++-|. -|||.|.+++.|..|+..
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 4444499999999999999999994 477777663 699999999999988863
No 372
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.06 E-value=3.3e-05 Score=54.17 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=41.1
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.++||+|||..+++++|+++|+.||.+....+..++. .++.++.||.. ..+.++|..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-----~~~~~g~afV~--f~~~~~a~~a 59 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-----TGSSRGYGFVS--FTSQDDAQNA 59 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-----TCCEEEEEEEE--ESCHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----CCCccceEEEE--ECCHHHHHHH
Confidence 3689999999999999999999999998776655432 12233334433 3456666665
No 373
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=5.1e-05 Score=54.66 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=42.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 74 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD-----TRKSKGVAFIL--FLDKDSAQNC 74 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS-----SCCCTTCEEEE--ESCHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCCcccEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998777765533 12233334443 3456666665
No 374
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.04 E-value=5.8e-05 Score=56.65 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=43.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 83 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ-----TNLSKCFGFVS--YDNPVSAQAA 83 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS-----SCSEEEEEEEE--CSSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----CCCcCccEEEE--ECCHHHHHHH
Confidence 347899999999999999999999999998777765542 12233334433 4456677665
No 375
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=4.6e-05 Score=55.48 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=42.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccc-eecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQAT-VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~-~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+. ...+..++. .++.|..||.. ..+.++|..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 68 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL-----TGIPAGYCFVE--FADLATAEKC 68 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS-----SCCEEEEEEEE--CSCHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC-----CCCcCCEEEEE--eCCHHHHHHH
Confidence 357899999999999999999999999988 776665542 12223333333 4467777666
No 376
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.09 E-value=9.8e-05 Score=55.51 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=43.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccce--------ecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATV--------GQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~--------g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+.. ..+..++ ..++.|..||..+.. .++|..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----~~g~~~g~afV~f~~--~~~A~~A 73 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-----ETGKLKGEATVSFDD--PPSAKAA 73 (116)
Confidence 3468999999999999999999999999875 3333322 246677788877543 4455444
No 377
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.01 E-value=7.3e-05 Score=55.59 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=43.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.++|..+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 84 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-----TGFSKGYALVE--YETHKQALAA 84 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT-----TSSBCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcceEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777655432 22333344444 3456666665
No 378
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=5.6e-05 Score=54.53 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=42.3
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|.++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 63 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD-----TGRSKGYGFIT--FSDSECARRA 63 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS-----SCCCCSEEEEE--ESCHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC-----CCceeeEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999998777665432 12233334444 3456666665
No 379
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=5.2e-05 Score=55.88 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=43.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|+.||.. ..+.++|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 73 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV-----TGQHQGYGFVE--FLSEEDADYA 73 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-----SCSBCSCEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCcCCcEEEEE--ECCHHHHHHH
Confidence 447899999999999999999999999998777765542 12233334443 3456666665
No 380
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=7.9e-05 Score=54.60 Aligned_cols=35 Identities=6% Similarity=-0.047 Sum_probs=30.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||..+++++|+++|+.||.|....+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~ 48 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML 48 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 34689999999999999999999999999865554
No 381
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.00 E-value=5.4e-05 Score=55.18 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=42.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccce--------ecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATV--------GQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~--------g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+.. ..+..++. .|+.|+.||.. ..+.++|.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----~g~~~G~afV~--f~~~~~a~~A 79 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-----TGKLKGEATVS--FDDPPSAKAA 79 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-----TCSEEEEEEEE--BSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-----CCCeeeEEEEE--ECCHHHHHHH
Confidence 3468999999999999999999999999987 44544432 23334444444 3456666655
No 382
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=5.5e-05 Score=55.85 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=43.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.++|..+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 81 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----TGYLKGYTLVE--YETYKEAQAA 81 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TSSEEEEEEEE--ESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-----CCceeeEEEEE--ECCHHHHHHH
Confidence 456899999999999999999999999998777655443 12333334443 3456666665
No 383
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=5.2e-05 Score=54.67 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=42.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|.++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 73 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----SRRSRGFAFVY--FENVDDAKEA 73 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS-----SSSEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-----CCCcccEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998776655432 12223334433 3456666665
No 384
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=5.6e-05 Score=55.06 Aligned_cols=61 Identities=5% Similarity=0.035 Sum_probs=43.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A~ 69 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE-----KQRPRGFGFIT--FEDEQSVDQAV 69 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT-----TCSCCSEEEEE--ESSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-----CCCCCceEEEE--ECCHHHHHHHH
Confidence 446899999999999999999999999998777655432 12333334444 34566666663
No 385
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=8.8e-05 Score=55.42 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=42.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccc--------eecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQAT--------VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~--------~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|. ...+..++. .++.|..||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-----~g~~~g~afV~--f~~~~~A~~A 81 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-----TGKPKGDATVS--YEDPPTAKAA 81 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT-----TCSBCSEEEEE--BSSHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC-----CCCeeeEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999997 344444422 23334445544 4456666665
No 386
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.95 E-value=7.9e-05 Score=56.10 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=43.3
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|.++|+.||.|....+..++. |+.|+.||.. ..+.++|..+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------g~~~g~afV~--F~~~~~A~~A 64 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT------SKSRGFAFIT--FENPADAKNA 64 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT------TTCCCEEEEE--CSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC------CCcccEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999998777665542 3334444444 4457777666
No 387
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.00013 Score=52.85 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=42.3
Q ss_pred ccccccccCCcccccchhhH----HHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLL----KFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~----~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+ ++|+.||.|....+..++.+ |..||.. ..+.++|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--------rg~afV~--f~~~~~A~~A 68 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--------QLKAVVQ--MENLQDAIGA 68 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--------TCCEEEE--ESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--------CeEEEEE--ECCHHHHHHH
Confidence 34689999999999999999 99999999998777665432 2223333 4456777666
No 388
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.95 E-value=7.4e-05 Score=57.42 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=42.9
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|+.||.. ..+.++|.++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-----tg~~~G~afV~--F~~~~~A~~A 104 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-----SRRSRGFAFVY--FENVDDAKEA 104 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS-----SSCCCCEEEEE--ESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998777765432 12233334443 3456677665
No 389
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=4.7e-05 Score=55.90 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=43.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|+.||.. ..+.++|..+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A~ 74 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-----TGHSKGFGFVR--FTEYETQVKVM 74 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-----SCSEEEEEEEE--ESSHHHHHHHH
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-----CCCccceEEEE--ECCHHHHHHHH
Confidence 346899999999999999999999999998777765532 12333334444 33566666653
No 390
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=9.2e-05 Score=55.64 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=43.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 85 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA-----SKRSRGFGFVT--FSSMAEVDAA 85 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT-----TSSCCSEEEEE--CSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-----CCCcCceEEEE--eCCHHHHHHH
Confidence 347899999999999999999999999998777765532 12233334443 3456666665
No 391
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.93 E-value=9.6e-05 Score=56.41 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=42.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|.++|+.||.|....+..++. .++.|+.||.. ..+.++|..+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 80 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-----TGYLKGYTLVE--YETYKEAQAA 80 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-----TSSBCSCEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 356899999999999999999999999998777765532 22233334433 3456666665
No 392
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=6.5e-05 Score=54.80 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=43.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. |+.|..||.. ..+.++|..+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------g~~~g~afV~--f~~~~~a~~A 74 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA------GKPKGLAYVE--YENESQASQA 74 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT------SCEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC------CCEEeEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777665543 2233334443 3456666665
No 393
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=9.9e-05 Score=55.33 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=41.9
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|. ..+..++.. ...|+.|+.||.. ..+.++|.++
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~--~~~g~~~G~aFV~--f~~~~~a~~A 68 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAES--KSYFPPKGYAFLL--FQEESSVQAL 68 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSS--CCCSCTTSEEEEC--CSSHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCC--CCCCCcccEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999998 334333210 0114455555544 4557777666
No 394
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=7.1e-05 Score=56.08 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=43.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|+.||..+ .+.++|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~g~~~g~afV~f--~~~~~a~~A~ 84 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-----SRRSKGIAYVEF--CEIQSVPLAI 84 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC-----SSSCCCCEEEEE--SCGGGHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC-----CCccCcEEEEEe--CcHHHHHHHH
Confidence 457899999999999999999999999998777765543 122333344443 3455666554
No 395
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=6.7e-05 Score=56.40 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=43.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 75 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ-----TGKSRGYGFVT--MADRAAAERA 75 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS-----SCCCCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998776665432 12333344444 3456666665
No 396
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.92 E-value=0.00057 Score=50.85 Aligned_cols=55 Identities=7% Similarity=-0.110 Sum_probs=39.7
Q ss_pred cccccccCCcccccchhhHHHHhhcc-ccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYK-QATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg-~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.|| .|....+...++ |+.||.. ..+.++|.++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~---------rGfaFV~--F~~~e~A~~A 83 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDF---------DGTGALE--FPSEEILVEA 83 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSS---------SCCEEEE--ESSHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCC---------CCEEEEE--ECCHHHHHHH
Confidence 36899999999999999999999999 888766643322 2223333 3456677666
No 397
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.00036 Score=51.19 Aligned_cols=59 Identities=8% Similarity=-0.063 Sum_probs=44.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. |+.|+.||..+ .+.++|..+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~------g~~rG~aFV~F--~~~e~a~~A 68 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH------KAFKGSIFVVF--DSIESAKKF 68 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT------TSCCCEEEEEE--SSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC------CCCccEEEEEE--CCHHHHHHH
Confidence 346899999999999999999999999998777766542 34444455443 356666665
No 398
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.89 E-value=6.7e-05 Score=55.10 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=43.2
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.+....+..++. .|+.|+.||.. ..+.++|.++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A 66 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-----TGKPKGYGFCE--YQDQETALSA 66 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-----TTEEEEEEEEE--CSCHHHHHHH
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999998776665432 23333344443 4567777766
No 399
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.88 E-value=5.9e-05 Score=55.55 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=43.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. ++.|..||.. ..+.++|..+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------g~~~g~afV~--f~~~~~A~~A 72 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD------GSSKGCAFVK--FSSHTEAQAA 72 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS------SCEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC------CCcCcEEEEE--eCCHHHHHHH
Confidence 357899999999999999999999999998777765543 2333344444 3456677665
No 400
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.00012 Score=54.39 Aligned_cols=59 Identities=7% Similarity=0.007 Sum_probs=43.0
Q ss_pred cccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
-...++||+|||..+++++|+++|+.||.|....+..++. +.|+.||.. ..+.++|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------~~kg~afV~--f~~~~~A~~A 85 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------GSKGFGFVT--FENSADADRA 85 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------BCTTEEEEE--CCCSHHHHHH
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------CCceEEEEE--ECCHHHHHHH
Confidence 3557899999999999999999999999998766655431 234444444 4456666655
No 401
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.87 E-value=5.5e-05 Score=60.24 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=42.7
Q ss_pred cccccccCCcccccchhhHHHHhhcc--ccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYK--QATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg--~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.|| .|....+..++. .|+.|+.||.. ..+.++|..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~-----tg~skGfaFV~--f~~~~~A~~A 115 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA-----NGQSKGYAEVV--VASENSVHKL 115 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT-----TCCEEEEEEEE--ESCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999 777666655532 33444445544 3456777666
No 402
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.86 E-value=4.5e-05 Score=54.26 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=42.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+....+..++. .++.|+.||..+ .+.++|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~f--~~~~~a~~a 64 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-----SGHPKGFAYIEF--SDKESVRTS 64 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-----SSSCCEEEEEEE--SSTHHHHHH
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-----CCCcceEEEEEE--CCHHHHHHH
Confidence 346899999999999999999999999998777665432 122333344443 345666655
No 403
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.86 E-value=0.00052 Score=48.85 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=31.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
...++||+|||..+++++|+++|+.||.|....+..+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 3468999999999999999999999999987666553
No 404
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.85 E-value=0.0002 Score=53.05 Aligned_cols=37 Identities=5% Similarity=0.095 Sum_probs=32.1
Q ss_pred hcccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 97 RFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 97 ~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
.....++||+|||..+++++|+++|+.||.|....+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3456799999999999999999999999999866554
No 405
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.84 E-value=4.9e-05 Score=54.85 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=40.8
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.+....+..++. .++.|..||.. ..+.++|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~-----~g~~~g~afV~--f~~~~~a~~A 73 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-----KGMPTGEAMVA--FESRDEATAA 73 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT-----TSCEEEEEEEE--ESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC-----CCCEeeEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999987544444322 22333334443 3456666665
No 406
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.81 E-value=0.0001 Score=55.25 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=43.1
Q ss_pred ccccccccCCcccccchhhHHHHhhcccc-ceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQA-TVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v-~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+ ....+..++. |+.|+.||.. ..+.++|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~------g~~~G~afV~--F~~~~~a~~A 73 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN------GQGLGQALVQ--FKNEDDARKS 73 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT------SSCSSCEEEE--CSSHHHHHHH
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC------CCcceEEEEE--ECCHHHHHHH
Confidence 44689999999999999999999999998 6555554432 3444445544 4457777776
No 407
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.81 E-value=7e-05 Score=56.17 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=43.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|+.||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 73 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-----TGKSKGYGFVS--FFNKWDAENA 73 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCCcceEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777765432 22233334443 3456666665
No 408
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=0.00011 Score=53.78 Aligned_cols=60 Identities=8% Similarity=0.055 Sum_probs=42.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||..+. +.++|..+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~f~--~~~~A~~A 71 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH-----TKAPRGFAFVRFH--DRRDAQDA 71 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS-----SCSBCSCEEEEES--SSSHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-----CCCCCeEEEEEEC--CHHHHHHH
Confidence 347899999999999999999999999998777665432 1333444555543 34455544
No 409
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.81 E-value=8.8e-05 Score=54.62 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=42.7
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||..+.. .++|..+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-----~g~~~g~afV~f~~--~~~a~~a 74 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-----TNQSRGFGFVKFKD--PNCVGTV 74 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-----SCCEEEEEEEEESS--TTHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-----CCCcceEEEEEECC--HHHHHHH
Confidence 447899999999999999999999999998777665532 22334445555443 4455554
No 410
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.00037 Score=51.01 Aligned_cols=37 Identities=8% Similarity=-0.050 Sum_probs=32.4
Q ss_pred ccccccccCCcc-cccchhhHHHHhhccccceecccCC
Q psy630 99 NQACDYLPSLVK-KLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 99 ~~~~~~v~~l~~-~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
...++||+|||. .+++++|+++|+.||.|+...+..+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~ 51 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK 51 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 356899999999 9999999999999999997776544
No 411
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.80 E-value=0.00011 Score=57.06 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=43.7
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|+.||.. ..+.++|.++
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 121 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-----TEKHRGFAFVE--FELAEDAAAA 121 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT-----TCCCCSEEEEE--ESCHHHHHHH
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC-----CCCcCcEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777655432 22334444444 3456666665
No 412
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.79 E-value=9.9e-05 Score=55.91 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=40.2
Q ss_pred ccccccCC----cccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcC
Q psy630 101 ACDYLPSL----VKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLG 155 (347)
Q Consensus 101 ~~~~v~~l----~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~ 155 (347)
..|||+|| |..+++.+|+.+|+.||+|.+..+..++- .|++|+.+|..+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~-----Tg~slGfgfVef~ 56 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN-----SALPLHVYLIKYA 56 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT-----TCCEEEEEEEECC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCceeeEEEEEEC
Confidence 46899999 99999999999999999999888877653 4455555555554
No 413
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.79 E-value=0.00035 Score=49.28 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=39.7
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.-+||+||++.+++++|+++|..||+|....+..+ |+.|+. +..+.+||.++
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-----------kGfaFV--ey~~~~eA~~A 59 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-----------QGIALC--KYTTREEANKA 59 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT-----------TTEEEE--EESSHHHHHHH
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-----------CcEEEE--EECCHHHHHHH
Confidence 46899999999999999999999999987555432 333333 35567788777
No 414
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=9.7e-05 Score=56.21 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=42.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccc----eecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQAT----VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~----~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.|. ...+..++ .|+.|+.||.. ..+.++|.++.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~------~gr~~G~aFV~--F~~~~~A~~Al 85 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP------DGRPTGDAFVL--FACEEYAQNAL 85 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT------TSCEEEEEEEC--CSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC------CCCEeeEEEEE--ECCHHHHHHHH
Confidence 346899999999999999999999999863 33333332 34555555554 45677777764
No 415
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.78 E-value=9.6e-05 Score=56.22 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=43.9
Q ss_pred cccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
-...++||+|||..+++++|+++|+.||.|....+..++. .|+.|+.||.. ..+.++|..+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A~ 95 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF-----SGHPKGYAYIE--FAERNSVDAAV 95 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT-----TSSCEEEEEEE--ESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-----CCCcccEEEEE--ECCHHHHHHHH
Confidence 3457899999999999999999999999998766655431 22333334443 34566776664
No 416
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.78 E-value=8.9e-05 Score=51.79 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=38.5
Q ss_pred ccccccCCcccc------cchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKL------DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~------~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
.++||+|||..+ ++++|+++|+.||.+....+. .. .|+.|+.||.. ..+.++|..+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~------~g~~~g~afV~--f~~~~~A~~A 63 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EE------DGKTKGYIFLE--YASPAHAVDA 63 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CB------TTBCCCEEEEE--ESSHHHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CC------CCcEeEEEEEE--ECCHHHHHHH
Confidence 478999999998 679999999999999876654 21 23334344443 3346666555
No 417
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=8.4e-05 Score=54.73 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=42.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccce-ecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATV-GQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~-g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.+.. ..+..+. .|+.|+.|+.. ..+.++|..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~------~g~~~G~afV~--F~~~~~a~~A~ 74 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF------QGRSTGEAFVQ--FASQEIAEKAL 74 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS------SSCBCSEEEEE--ESSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC------CCCcceEEEEE--ECCHHHHHHHH
Confidence 3468999999999999999999999999875 4444432 23444445544 34567776663
No 418
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.00013 Score=54.02 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=42.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccc-cceeccc-CCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQ-ATVGQCN-IDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~-v~~g~~~-~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||. +....+. .++. .|+.|+.||.. ..+.++|..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~-----~g~~~g~afV~--f~~~~~A~~A 68 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD-----KMKNRGFAFVE--YESHRAAAMA 68 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT-----TTTTCCEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC-----CCCcCcEEEEE--ecCHHHHHHH
Confidence 3468999999999999999999999998 8766655 2221 23444445544 3456777665
No 419
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0037 Score=45.17 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCeEEEeCCCCCC-CH----HHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc-CCCccCCccccc
Q psy630 8 LNKIFVGNLPWTV-SH----NELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81 (347)
Q Consensus 8 ~~~l~V~nLp~~~-t~----~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~v 81 (347)
.++|+|.||+.++ .. +.++++|.+|+++......+.- .=.-|.|.+.++|.+|... ++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999876 32 4678999999998887776432 2357999999999998875 999999999999
Q ss_pred cCCCc
Q psy630 82 QPSDS 86 (347)
Q Consensus 82 ~~~~~ 86 (347)
-.+++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88874
No 420
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.00075 Score=47.71 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=31.6
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
..++||+|||..+++++|+++|+.||.|....+..+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 468999999999999999999999999987666543
No 421
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=4.6e-05 Score=55.96 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=42.7
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 73 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT-----TGQSKGFAFIS--FHRREDAARA 73 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS-----SCSEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC-----CCceeeEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777665432 12223334433 3456666665
No 422
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.74 E-value=9.4e-05 Score=54.01 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=42.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.|| +....+..++. ..|+.|+.||.. ..+.++|.++.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~----~~g~~~g~afV~--f~~~~~a~~Ai 78 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS----NPERLKGFGYAE--FEDLDSLLSAL 78 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT----TTCCCCSCEEEE--ECCHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC----cCCccCeEEEEE--ECCHHHHHHHH
Confidence 457899999999999999999999999 88766655431 123334444444 34577777664
No 423
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.00094 Score=49.63 Aligned_cols=35 Identities=3% Similarity=-0.068 Sum_probs=30.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||..+++++|+++|+.||.|....+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 43 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP 43 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe
Confidence 34689999999999999999999999999865544
No 424
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.00011 Score=55.04 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=42.7
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. ++.|..||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~------g~~~g~afV~--f~~~~~a~~A 72 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD------GKSRGIGTVT--FEQSIEAVQA 72 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT------CSEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC------CCeeeEEEEE--ECCHHHHHHH
Confidence 346899999999999999999999999998766665543 2333334443 3456666665
No 425
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.72 E-value=0.00042 Score=51.96 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=31.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
..++||+|||..+++++|+++|+.||.|....+..+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 468999999999999999999999999987666544
No 426
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.71 E-value=0.0013 Score=48.75 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=41.0
Q ss_pred cCCccccccCCCcccccchhhhhhcccccccccCCccc-ccchhhHHHHhhccccceecc
Q psy630 74 LEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKK-LDSSTLLKFYALYKQATVGQC 132 (347)
Q Consensus 74 ~~g~~l~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~-~~~e~l~~~f~~fg~v~~g~~ 132 (347)
..|.++.+..+....... ..-...++||+|||.. +++++|+++|+.||.|....+
T Consensus 5 ~~g~~~~~~~s~~~~~~~----~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKND----PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp CCSCCCCCCCCCSCCSCC----CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCCcccccccCCCCCCCC----CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 456778777665533221 1223468999999999 999999999999999987655
No 427
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.71 E-value=5.2e-05 Score=55.07 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=40.5
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.+....+..++. .|+.|..||.. ..+.++|.++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~-----~g~~~g~afV~--f~~~~~a~~A 73 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-----KGMPTGEAMVA--FESRDEATAA 73 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS-----SSCEEEEEEEE--ESCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC-----CCCeeeEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999987544433322 22333334444 3456666665
No 428
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.70 E-value=7.8e-05 Score=54.70 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=42.5
Q ss_pred cccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 98 FNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
....++||+|||..+++++|+++|+.||.|....+..+ . ++.|..||.. ..+.++|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~------g~~~g~afV~--f~~~~~A~~A 71 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G------GRSKGFGFVC--FSSPEEATKA 71 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S------SSEEEEEEEE--ESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C------CCcCEEEEEE--ECCHHHHHHH
Confidence 35678999999999999999999999999987666544 2 2233334443 3456666655
No 429
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.70 E-value=0.00016 Score=53.52 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=42.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccc---cceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQ---ATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~---v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||. +....+..++. |+.|+.|+..+ .+.++|..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~------g~~~G~afV~F--~~~~~a~~A 71 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD------GKRRGDALIEM--ESEQDVQKA 71 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT------STTCSEEEEEB--SSHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC------CCEeeEEEEEE--CCHHHHHHH
Confidence 3468999999999999999999999998 66555554432 44555555553 456666665
No 430
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.70 E-value=0.00015 Score=55.17 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=43.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. |+.|+.||.. ..+.++|..+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~------g~~~g~afV~--f~~~~~A~~A 92 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS------GRSLGTADVH--FERRADALKA 92 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS------SSCCSEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC------CCEeeEEEEE--ECCHHHHHHH
Confidence 457899999999999999999999999998777765542 2233334433 3456666665
No 431
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.69 E-value=0.00011 Score=52.63 Aligned_cols=58 Identities=10% Similarity=-0.021 Sum_probs=41.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+....+..+ . ++.|..||.. ..+.++|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~------g~~~g~afV~--f~~~~~a~~a 64 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-N------GKSKGCGVVK--FESPEVAERA 64 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-S------SCEEEEEEEE--ESSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-C------CCcceEEEEE--ECCHHHHHHH
Confidence 3468999999999999999999999999987666542 1 2233334443 3456666665
No 432
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0026 Score=45.73 Aligned_cols=36 Identities=6% Similarity=-0.024 Sum_probs=31.4
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
..++||+|||..+++++|+++|+.||.|....+...
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 468999999999999999999999999987666543
No 433
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.67 E-value=0.00014 Score=54.00 Aligned_cols=58 Identities=5% Similarity=0.012 Sum_probs=43.3
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
..++||+|||..+++++|+++|+.| .|....+..++ .|+.|+.||.. ..+.++|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~------~g~~~G~afV~--F~~~~~a~~Al 73 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH------VGRNNGNGLVK--FLSPQDTFEAL 73 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT------TCCCCSEEEEE--CSSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC------CCCCCeEEEEE--ECCHHHHHHHH
Confidence 3689999999999999999999999 67766665543 24555556655 44577777774
No 434
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.67 E-value=0.0011 Score=49.28 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=31.0
Q ss_pred ccccccccCCccc-ccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKK-LDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~-~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||.. +++++|+++|+.||.|....+.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~ 59 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM 59 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe
Confidence 3568999999998 9999999999999999876664
No 435
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.0007 Score=48.35 Aligned_cols=35 Identities=6% Similarity=-0.059 Sum_probs=30.9
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||..+++++|+++|+.||.|....+.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~ 43 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV 43 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 45789999999999999999999999999866554
No 436
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.65 E-value=0.00011 Score=54.00 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=42.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.|| |....+..++.. .++.|..||.. ..+.++|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~----~g~~~g~afV~--f~~~~~a~~A~ 74 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN----PERLKGFGYAE--FEDLDSLLSAL 74 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC----TTSBCSCEEEE--ESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC----CCCcCeEEEEE--ECCHHHHHHHH
Confidence 346899999999999999999999999 876666554320 03334444444 34567776663
No 437
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.00031 Score=51.18 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=30.4
Q ss_pred cccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
..++||+|||..+++++|+++|+.||.|....+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 60 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY 60 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe
Confidence 4689999999999999999999999999866554
No 438
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.64 E-value=5e-05 Score=54.22 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
.++||+|||..+++++|+++|+.||.+....+..++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 37 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR 37 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC
Confidence 468999999999999999999999999877666543
No 439
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.63 E-value=6.5e-05 Score=56.65 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=33.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
...++||+|||..+++++|+++|+.||.|....+..++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 76 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK 76 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 45789999999999999999999999999877766543
No 440
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.63 E-value=0.00047 Score=49.75 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=42.3
Q ss_pred ccccccccCCcccccchhhH----HHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLL----KFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~----~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+ ++|+.||.+....+. ..|+.|+.||.. ..+.++|..+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--------~~~~~~g~afV~--f~~~~~A~~A 67 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--------RSLKMRGQAFVI--FKEVSSATNA 67 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--------HHHHHTTCEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--------cCCCcCcEEEEE--eCCHHHHHHH
Confidence 34689999999999999999 999999998865443 145556555554 3456777666
No 441
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.62 E-value=0.00046 Score=51.04 Aligned_cols=37 Identities=8% Similarity=-0.083 Sum_probs=32.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
...++||+|||..+++++|+++|+.||.|....+..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 3468999999999999999999999999987666544
No 442
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.61 E-value=0.00011 Score=56.90 Aligned_cols=58 Identities=9% Similarity=-0.042 Sum_probs=42.5
Q ss_pred cccccccCCcccccchhhHHHHhhccc---cceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQ---ATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~---v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||. +....+..++. |+.|+.||.. ..+.++|.++
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~------g~srG~aFV~--F~~~e~a~~A 104 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE------GRQSGEAFVE--LGSEDDVKMA 104 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS------SCEEEEEEEE--CSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC------CCCCeEEEEE--ECCHHHHHHH
Confidence 468999999999999999999999999 66555544432 4455555555 3457777766
No 443
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.60 E-value=0.00079 Score=47.83 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=30.9
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||..+++++|+++|+.||.|....+.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~ 42 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV 42 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE
Confidence 45689999999999999999999999999866654
No 444
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.00029 Score=50.19 Aligned_cols=34 Identities=6% Similarity=0.110 Sum_probs=30.2
Q ss_pred cccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
..++||+|||..+++++|+++|+.||.|....+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 4689999999999999999999999999865554
No 445
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.58 E-value=0.0018 Score=47.05 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=30.6
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
+++||+|||..+++++|+++|+.||.|....+..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 36899999999999999999999999987666554
No 446
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=8.4e-05 Score=56.63 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=41.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..+++ .|+.|+.||..+. +.++|..+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-----~g~~~G~afV~F~--~~~~a~~A 83 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-----NGKATGEGFVEFR--NEADYKAA 83 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT-----TSSEEEEEEEEBS--SSHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC-----CCCCCeEEEEEEC--CHHHHHHH
Confidence 447899999999999999999999999987533322221 3344445555543 45566555
No 447
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.56 E-value=0.00032 Score=51.99 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=32.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
...++||+|||..+++++|+++|+.||.|....+..+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 4578999999999999999999999999987666544
No 448
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.55 E-value=0.001 Score=48.94 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=43.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|.++|+.||.|....+..++.+ +.|+.||.. ..+.++|..+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g------~~~g~afV~--f~~~~~a~~A 86 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSG------RSLGTADVH--FERKADALKA 86 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTS------CEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC------CcceEEEEE--ECCHHHHHHH
Confidence 3468999999999999999999999999987777655432 233334443 3456666665
No 449
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.54 E-value=0.00012 Score=56.90 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=43.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~a~~A 100 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-----TRQSRGYGFVK--FQSGSSAQQA 100 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-----TTEEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-----CCCcceEEEEE--ECCHHHHHHH
Confidence 447899999999999999999999999998777655432 23334445544 3456666665
No 450
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.53 E-value=0.00099 Score=48.91 Aligned_cols=54 Identities=9% Similarity=-0.092 Sum_probs=39.5
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
..++||+|||..+++++|+++|+.||.|....+... |..||.+ ..+.++|..+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------kg~aFVe--f~~~~~A~~Ai 68 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------KRQALVE--FENIDSAKECV 68 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------TTEEEEE--ESSHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------CCEEEEE--ECCHHHHHHHH
Confidence 468999999999999999999999999987555332 2334444 33466666664
No 451
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.51 E-value=0.00098 Score=53.01 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=39.8
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..+||+||+..+++++|+++|+.||.|....+...+++.+ ||.+ ..+.++|..+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgf---------AFVe--F~d~~~A~~A 100 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQ---------ALLQ--YADPVSAQHA 100 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEE---------EEEE--ESCHHHHHHH
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCE---------EEEE--ECCHHHHHHH
Confidence 4689999999999999999999999998777644433222 3333 3456777766
No 452
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.51 E-value=0.0005 Score=51.39 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=40.5
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.+....+..+.. .++.||.. ..+.++|..+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--------~~g~afV~--f~~~~~A~~A 63 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE--------TRGTAYVV--YEDIFDAKNA 63 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT--------TTTCEEEE--ESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--------CCcEEEEE--ECCHHHHHHH
Confidence 35899999999999999999999999998766654321 13334433 4456677665
No 453
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.50 E-value=0.00012 Score=55.19 Aligned_cols=59 Identities=8% Similarity=-0.017 Sum_probs=42.5
Q ss_pred ccccccccCCcccccchhhHHHHhhccc---cceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQ---ATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~---v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||. |....+..++. |+.|+.|+..+ .+.++|.++
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~------g~~~G~afV~F--~~~~~a~~A 77 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE------GRQSGEAFVEL--ESEDDVKLA 77 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS------SCEEEEEEEEB--SSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC------CCCCeEEEEEE--CCHHHHHHH
Confidence 3468999999999999999999999999 66555554432 34454555553 356666666
No 454
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=8e-05 Score=54.67 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=42.0
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.||.+ ...+..++. ++.|..||.. ..+.++|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~------g~~~G~afV~--F~~~~~a~~Al 72 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPD------GRVTGEADVE--FATHEDAVAAM 72 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSS------SCEEEEEEEE--CSSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCC------CCEeeEEEEE--ECCHHHHHHHH
Confidence 44689999999999999999999999954 445544432 4445555555 44566777664
No 455
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.48 E-value=0.0011 Score=50.66 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=39.0
Q ss_pred ccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..+||+||+..+++++|.++|+.||.|....+.....|+ .||.+ ..+.++|..+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gf---------qAFVe--f~~~~~A~~A 82 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQF---------QALLQ--YADPVSAQHA 82 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEE---------EEEEE--ESCHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCc---------EEEEE--ECCHHHHHHH
Confidence 467899999999999999999999999876554322221 13333 3457777776
No 456
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.47 E-value=0.0019 Score=53.14 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=61.7
Q ss_pred CHHHHHHHHhc---CCCccCCccccccCCCccc--ccchhhhhhcccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 59 NKEAVDKVFST---DSHVLEGSRLSIQPSDSHN--RMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 59 ~~~~a~~a~~~---~~~~~~g~~l~v~~~~~~~--~~~~~~~~~f~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
+.+.+..|+.. ....+.+....|.+..... .............++||+|||..+++++|.++|+.||.|....+.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 45666777764 2344555555554442211 111111123455789999999999999999999999999877666
Q ss_pred CCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 134 IDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 134 ~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
.+.. ++.|+.|+.. ..+.++|..+.
T Consensus 143 ~~~~------~~~kG~aFVe--F~~~e~A~~A~ 167 (193)
T 2voo_A 143 RTLH------KAFKGSIFVV--FDSIESAKKFV 167 (193)
T ss_dssp ECTT------CCEEEEEEEE--ESSHHHHHHHH
T ss_pred ECCC------CCcccEEEEE--ECCHHHHHHHH
Confidence 5432 3344445544 34577777663
No 457
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.47 E-value=0.00018 Score=57.07 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=43.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...+|||+|||..+++++|.++|+.||.|....+..++. .++.|..||.. ..+.++|..+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~~~g~afV~--f~~~~~A~~A 97 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-----KKTACGFCFVE--YYSRADAENA 97 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----TCCEEEEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCccceEEEEE--ECCHHHHHHH
Confidence 447899999999999999999999999998777655432 12233334443 3456677665
No 458
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.46 E-value=0.0015 Score=49.26 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=56.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEeee--------CCCC-----CceeEEEEEEcCHHHHHHHHhcCCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNA-SVMFD--------KNTG-----LSKGFGFVTFQNKEAVDKVFSTDSHV 73 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~-~i~~~--------~~t~-----~~~g~afV~f~~~~~a~~a~~~~~~~ 73 (347)
...|.|=+.|+..+.. +-++|++||.|.+- ...+. +.+. .......|+|.+..+|.+|+..||.+
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3457777898877554 67789999998762 11110 0001 12467799999999999999999999
Q ss_pred cCCccccccCCCc
Q psy630 74 LEGSRLSIQPSDS 86 (347)
Q Consensus 74 ~~g~~l~v~~~~~ 86 (347)
|.|..|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887754
No 459
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.44 E-value=0.0011 Score=48.44 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=30.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
..++||+|||..+++++|+++|+.||.|....+.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 44 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL 44 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 4689999999999999999999999999865543
No 460
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.35 E-value=0.00032 Score=56.98 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=42.9
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|....+..++. ++.|..||.. ..+.++|..+
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~------g~~kG~afV~--F~~~~~A~~A 145 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS------GRSLGTADVH--FERRADALKA 145 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT------SSCSCCEEEE--ESCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC------CCEeeEEEEE--eCCHHHHHHH
Confidence 47899999999999999999999999998777765542 2333344444 3456677665
No 461
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=46.18 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=38.2
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|. ..+... +.|..||.. ..+.++|..+
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------~~~g~afV~--f~~~~~a~~A 72 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------GPRRRAFLH--YPDSAAAQQA 72 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------TTTTEEEEE--CSSHHHHHHH
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------CCCcEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999985 233222 233334433 4456677665
No 462
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.32 E-value=0.0025 Score=47.46 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=38.9
Q ss_pred cccccc--cCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 100 QACDYL--PSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 100 ~~~~~v--~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
..++|| +||+..+++++|+++|+.||.|....+...+ ..||. ...+.++|..++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-----------gfaFV--~f~~~~~A~~Ai 80 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----------PYSFA--RYRTTEESKRAY 80 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-----------SCEEE--EESSHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----------CEEEE--EECCHHHHHHHH
Confidence 457999 7799999999999999999999865554321 12332 244677777773
No 463
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.30 E-value=0.0015 Score=45.96 Aligned_cols=37 Identities=5% Similarity=0.254 Sum_probs=32.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDK 136 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~ 136 (347)
..++||+|||..+++++|+++|+.||.+....+..++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 40 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 40 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 4689999999999999999999999999876665543
No 464
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.00055 Score=49.00 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.6
Q ss_pred cccccccCCcccccchhhHHHHhhccc-cc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQ-AT 128 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~-v~ 128 (347)
..++||+|||..+++++|+++|+.||. +.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~ 37 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLA 37 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceE
Confidence 468999999999999999999999998 54
No 465
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.00011 Score=55.00 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=39.4
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.+....+..... .++.|+.||.. ..+.++|..+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-----~g~~~g~afV~--f~~~~~a~~A 83 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-----TGRMRGQAFIT--FPNKEIAWQA 83 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-----CSSSCSEEEEE--CSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-----CCccceEEEEE--ECCHHHHHHH
Confidence 347899999999999999999999999985322222110 22333334443 4456666665
No 466
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.29 E-value=0.00012 Score=53.41 Aligned_cols=58 Identities=5% Similarity=-0.072 Sum_probs=41.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.+.. .+..++ ..++.|..||.. ..+.++|.++
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-----~~g~~~g~afV~--f~~~~~a~~A 74 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-----RTGTNRKFGYVD--FESAEDLEKA 74 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-----EEETTTTEEEEE--ESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-----CCCCcCcEEEEE--ECCHHHHHHH
Confidence 468999999999999999999999999875 232221 134455555554 3456666666
No 467
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.27 E-value=0.002 Score=48.89 Aligned_cols=33 Identities=3% Similarity=-0.176 Sum_probs=29.3
Q ss_pred ccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 101 ACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 101 ~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
..+||+||+..+++++|.++|+.||.|....+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~ 58 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF 58 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 357899999999999999999999999876664
No 468
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.26 E-value=0.002 Score=46.14 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=42.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. ++.|..||..+ .+.++|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~------g~~~g~afV~f--~~~~~a~~A 73 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE------GKPKSFGFVCF--KHPESVSYA 73 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT------SCEEEEEEEEE--SSTHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC------CCCceEEEEEE--CCHHHHHHH
Confidence 346899999999999999999999999998766665542 23333444443 345566555
No 469
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.26 E-value=0.00028 Score=59.87 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=42.6
Q ss_pred ccccccccCCcccccchhhHHHHhhcc--ccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYK--QATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg--~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...+|||+||+..+++++|+++|+.|| .|....+..++. .++.|..||..+. +.++|.++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~-----tg~skGfaFV~f~--~~~~a~~A 128 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-----NGQSKGFALVGVG--SEASSKKL 128 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT-----TCCEEEEEEEEES--CTTHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC-----CCccceEEEEEEC--CHHHHHHH
Confidence 346899999999999999999999999 888777766542 3445555555544 34455444
No 470
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.25 E-value=0.0076 Score=42.94 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=44.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhc
Q psy630 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69 (347)
Q Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~ 69 (347)
.||+-++|+.+...+|.++|+.|| -..|+++-|. -|||.|.+++.|..|+..
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 455559999999999999999999 5577777663 699999999999988873
No 471
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.16 E-value=0.0035 Score=58.25 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCCceeEEEEEEcCHHHHHHHHhcC
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFSTD 70 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~~~g~afV~f~~~~~a~~a~~~~ 70 (347)
.|+|||. .|..+++.+|.++|++||.|.++.+..++ .-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 4799997 79999999999999999999999887544 279999999999988887653
No 472
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.16 E-value=0.00038 Score=53.09 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=41.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccc--eecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQAT--VGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~--~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.| .+. ...+..++ .|+.|+.||..+. +.++|.++.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~------~GrsrGfaFV~F~--~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP------EGKITGEAFVQFA--SQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS------SSSSCSEEEEEES--STTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC------CCCCceEEEEEEC--CHHHHHHHH
Confidence 34679999999999999999999999 455 44444433 2455666666644 455665553
No 473
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.14 E-value=0.0022 Score=46.06 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=31.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceec-ccCC
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQ-CNID 135 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~-~~~~ 135 (347)
..++||+|||..+++++|+++|+.||.|...+ +..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~ 51 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD 51 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC
Confidence 46899999999999999999999999998763 4444
No 474
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.14 E-value=0.0024 Score=46.49 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=42.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++.. .|..||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-------~~g~afV~--f~~~~~a~~A 71 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-------NDPYCFVE--FYEHRDAAAA 71 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-------SCCEEEEE--ESSHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-------CCCEEEEE--ECCHHHHHHH
Confidence 4578999999999999999999999999987776665322 12233333 3456777666
No 475
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.13 E-value=0.0009 Score=47.35 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=38.0
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.| .+....+. +.|+.||. ...+.++|.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----------~~~g~afV--~f~~~~~a~~A 56 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----------RNKRTAFV--TLLNGEQAQNA 56 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----------GGGTEEEE--CCSCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----------CCCcEEEE--EECCHHHHHHH
Confidence 4689999999999999999999999 77755442 23333443 34567777766
No 476
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.12 E-value=0.00017 Score=56.31 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=40.1
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecc--cCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQC--NIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~--~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+.+|+.||.|....+ ..+ -.....|+.|+.||.. ..+.++|..+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~d--i~~~~~g~~~g~afV~--f~~~~~A~~A 108 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFD--IRLMKEGRMKGQAFIG--LPNEKAAAKA 108 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCE--EEEEEETTTEEEEEEE--CSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceee--EEeccCCCcccEEEEE--eCCHHHHHHH
Confidence 468999999999999999999999999875311 111 0000123444444444 4466777666
No 477
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.09 E-value=0.0026 Score=46.34 Aligned_cols=58 Identities=7% Similarity=0.031 Sum_probs=42.3
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++.+ .|..||.. ..+.++|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-------~~g~afV~--f~~~~~a~~A 71 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-------SKGFGFVT--FENSADADRA 71 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-------TCCEEEEE--ESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-------CcEEEEEE--ECCHHHHHHH
Confidence 4578999999999999999999999999987776654321 23334433 3456777666
No 478
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.07 E-value=0.00041 Score=49.43 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=41.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.| .+....+..+.. |+.|+.||.. ..+.++|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~------g~~~g~afV~--f~~~~~a~~A 66 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH------GNKTGYIFVD--FSNEEEVKQA 66 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT------SCEEEEEEEE--CSSHHHHHHH
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC------CCCceEEEEE--ECCHHHHHHH
Confidence 44689999999999999999999999 787666655432 2333344443 4456666665
No 479
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.07 E-value=0.003 Score=46.57 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=40.7
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++. .|..||.. ..+.++|.++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--------~~g~afV~--f~~~~~A~~A 77 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG--------GPPFAFVE--FEDPRDAEDA 77 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS--------SSCCEEEE--ESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--------CCcEEEEE--ECCHHHHHHH
Confidence 446899999999999999999999999998766644321 22233333 3456666665
No 480
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.06 E-value=0.00052 Score=50.46 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=40.1
Q ss_pred cccccccCCcccc------cchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKL------DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~------~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+ ++++|+++|+.||.|....+. .. .|+.|+.||..+. +.++|..+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~------~g~~~G~afV~f~--~~~~A~~A 77 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EE------DGKTKGYIFLEYA--SPAHAVDA 77 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CB------TTBSCCEEEEEEC--SSSHHHHH
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CC------CCCeeeEEEEEEC--CHHHHHHH
Confidence 4689999999988 679999999999999876554 11 3444555655544 34455544
No 481
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.05 E-value=0.00026 Score=51.86 Aligned_cols=60 Identities=10% Similarity=-0.066 Sum_probs=41.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
...++||+|||..+++++|+++|+.|| |....+..++. .++.|..||.. ..+.++|..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~-----~g~~~g~afV~--f~~~~~a~~A~ 73 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD-----TDKFKGFCYVE--FDEVDSLKEAL 73 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS-----SCSEEEEEEEE--ESSHHHHHHHG
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC-----CCccceEEEEE--ECCHHHHHHHH
Confidence 346899999999999999999999997 77666655432 12333334444 34567776664
No 482
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.05 E-value=0.0018 Score=46.74 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=42.2
Q ss_pred cccccccCCcccccchhhHHHHhhccccceecccCCCC--CccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKP--SWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p--~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+++|+.||.|....+..++. | .++.|..||.. ..+.++|..+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g----t~~~~g~afV~--f~~~~~a~~A 66 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAG----VLLSMGFGFVE--YKKPEQAQKA 66 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTC----CEEEEEEEEEE--ESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC----CcCcccEEEEE--ECCHHHHHHH
Confidence 46899999999999999999999999998766654322 1 11333334444 3456666665
No 483
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.05 E-value=0.0021 Score=47.74 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=42.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|....+..++.+ +.|+.||.. ..+.++|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g------~~~g~afV~--f~~~~~a~~A 82 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG------TSRGVGFAR--MESTEKCEAV 82 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSS------CEEEEEEEE--ESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC------CcceEEEEE--ECCHHHHHHH
Confidence 4478999999999999999999999999987776655422 233334443 3456666665
No 484
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.02 E-value=0.0052 Score=43.87 Aligned_cols=70 Identities=10% Similarity=0.105 Sum_probs=46.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHhccCCeeEEEEeeeCCCCC--ceeEEEEEEcCHHHHHHHHhc-CCCccCCc
Q psy630 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGL--SKGFGFVTFQNKEAVDKVFST-DSHVLEGS 77 (347)
Q Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~~~i~~~~~t~~--~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 77 (347)
.-+|.|+.|||.+|++++.+.+..+=.+........+.+.+ .-.-|||.|.+.++...-... +|..+-+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 34799999999999998877776543332222222222211 125589999999988877765 87777543
No 485
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.02 E-value=0.0024 Score=44.65 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=31.2
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNI 134 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~ 134 (347)
...++||+|||..+++++|+++|+.||.+....+..
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC
Confidence 346899999999999999999999999988665543
No 486
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.99 E-value=0.0035 Score=45.40 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=38.6
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+.||.|.. ..+. .++.|..||.. ..+.++|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~---~~~~------~g~~~g~afV~--f~~~~~A~~A 69 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKV---PQNQ------NGKSKGYAFIE--FASFEDAKEA 69 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEEC---CBCS------SSCBCSEEEEE--CSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEE---EECC------CCCEeeEEEEE--ECCHHHHHHH
Confidence 4578999999999999999999999998842 2221 12233334443 4457777666
No 487
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.97 E-value=0.003 Score=45.91 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=39.1
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCC
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQ 156 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~ 156 (347)
...++||+|||..+++++|+++|+.||.|....+..++. |+.|+.||..+..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------g~~~g~afV~f~~ 59 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT------GVSKGYGFVSFYN 59 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT------SCEEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC------CCccceEEEEECC
Confidence 446899999999999999999999999998766665542 3334445555443
No 488
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.95 E-value=0.0032 Score=45.89 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=42.8
Q ss_pred ccccccccCCcccccchhhHHHHhh-ccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYAL-YKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~-fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|||..+++++|+++|+. ||.|....+..++.+ +.|..||.. ..+.++|..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g------~~~g~afV~--f~~~~~a~~A 67 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTG------VSKGYGFVK--FTDELEQKRA 67 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTC------CEEEEEEEE--ESCHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCC------CccceEEEE--ECCHHHHHHH
Confidence 3468999999999999999999999 999987777655432 233334433 3456666665
No 489
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.95 E-value=0.0029 Score=45.73 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=30.7
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceeccc
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCN 133 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~ 133 (347)
...++||+|||..+++++|+++|+.||.|....+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 48 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH 48 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe
Confidence 34689999999999999999999999999865554
No 490
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=95.81 E-value=0.00059 Score=52.14 Aligned_cols=56 Identities=7% Similarity=-0.035 Sum_probs=38.7
Q ss_pred cccccccCCcccccchhhH----HHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 100 QACDYLPSLVKKLDSSTLL----KFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~----~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
..++||+|||..+++++|+ ++|+.||.|....+ .+. ++.|+.||.. ..+.++|..+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i--~~~------~~~rG~aFV~--F~~~~~A~~A 88 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV--DLS------DDNSGKAYIV--FATQESAQAF 88 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE--CCC------CSSCCCEEEE--ESSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe--ccC------CCcCCEEEEE--ECCHHHHHHH
Confidence 4689999999999998865 69999999975444 221 2334445544 3456777766
No 491
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0037 Score=44.86 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=30.3
Q ss_pred ccccccccCCcc-cccchhhHHHHhhccccceecc
Q psy630 99 NQACDYLPSLVK-KLDSSTLLKFYALYKQATVGQC 132 (347)
Q Consensus 99 ~~~~~~v~~l~~-~~~~e~l~~~f~~fg~v~~g~~ 132 (347)
...++||+|||. .+++++|+++|+.||.|....+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i 43 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 43 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 456899999998 9999999999999999986555
No 492
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.74 E-value=0.0026 Score=47.17 Aligned_cols=64 Identities=9% Similarity=0.185 Sum_probs=43.3
Q ss_pred cccccccccCCcccccchhhH---HHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 98 FNQACDYLPSLVKKLDSSTLL---KFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 98 f~~~~~~v~~l~~~~~~e~l~---~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
....++||+|||..+++++|+ ++|+.||.|....+..++.. ...++.|+.||.. ..+.++|.++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~--~~~~~~~G~afV~--f~~~~~A~~A 79 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSY--AGSQGPSASAYVT--YIRSEDALRA 79 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSC--CSSSCCCEEEEEE--ESSHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCc--CccCCCCeEEEEE--ECcHHHHHHH
Confidence 345789999999999999999 99999999987777554321 0011122334433 3456677666
No 493
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=95.63 E-value=0.0049 Score=44.39 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=30.3
Q ss_pred ccccccccCCcc-cccchhhHHHHhhccccceecc
Q psy630 99 NQACDYLPSLVK-KLDSSTLLKFYALYKQATVGQC 132 (347)
Q Consensus 99 ~~~~~~v~~l~~-~~~~e~l~~~f~~fg~v~~g~~ 132 (347)
...++||+|||. .+++++|+++|+.||.|....+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i 55 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 55 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 457899999998 9999999999999999986655
No 494
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.51 E-value=0.0065 Score=43.35 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=28.3
Q ss_pred cccccccCCcccccchhhHHHHhhcccccee
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALYKQATVG 130 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g 130 (347)
..++||+|||..+++++|+++|+.||.|...
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 3589999999999999999999999999864
No 495
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.34 E-value=0.0067 Score=51.47 Aligned_cols=85 Identities=9% Similarity=-0.049 Sum_probs=50.5
Q ss_pred HHHhcCCCccCCccccccCCCcccccchhhhhhcccccccccCCcccc---------cchhhHHHHhhccccceecccCC
Q psy630 65 KVFSTDSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKL---------DSSTLLKFYALYKQATVGQCNID 135 (347)
Q Consensus 65 ~a~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~f~~~~~~v~~l~~~~---------~~e~l~~~f~~fg~v~~g~~~~~ 135 (347)
.++..+.....|+.....+........ ...-...++||+||+..+ ++++|+.+|+.||.|....+...
T Consensus 102 ~~~~~~~~D~fGr~k~~~~~d~~~g~g---s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~ 178 (240)
T 3u1l_A 102 LALRTEVLDCFGREKFADYREDMGGIG---SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES 178 (240)
T ss_dssp HHHHCSSBCTTSSBCGGGTC------------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred hcccccCcccccchhcccchhcccCcC---ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence 333334455557655444443322211 112245789999999988 79999999999999987665432
Q ss_pred CCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 136 KPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 136 ~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
|+.||.. ..+.++|..+
T Consensus 179 -----------kG~AFV~--F~~~~~Ae~A 195 (240)
T 3u1l_A 179 -----------KNCGFVK--FKYQANAEFA 195 (240)
T ss_dssp -----------GTEEEEE--ESSHHHHHHH
T ss_pred -----------CCEEEEE--eCCHHHHHHH
Confidence 3334443 4457777766
No 496
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.89 E-value=0.011 Score=42.47 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=27.7
Q ss_pred ccccccccCCcccccchhhHHHHhhc--ccccee
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALY--KQATVG 130 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~f--g~v~~g 130 (347)
...++||+|||..+++++|+++|+.| |.|...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEE
Confidence 34689999999999999999999999 766643
No 497
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=94.87 E-value=0.013 Score=40.89 Aligned_cols=25 Identities=8% Similarity=0.232 Sum_probs=23.6
Q ss_pred cccccccCCcccccchhhHHHHhhc
Q psy630 100 QACDYLPSLVKKLDSSTLLKFYALY 124 (347)
Q Consensus 100 ~~~~~v~~l~~~~~~e~l~~~f~~f 124 (347)
..++||+|||..+++++|+++|+.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~ 30 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQ 30 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999
No 498
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=94.42 E-value=0.012 Score=42.07 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=28.4
Q ss_pred ccccccccCCcccccchhhHHHHhhcccccee
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVG 130 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g 130 (347)
...++||+|||..+++++|+++|+.||.|...
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 44689999999999999999999999988643
No 499
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=93.72 E-value=0.01 Score=44.71 Aligned_cols=52 Identities=8% Similarity=0.012 Sum_probs=36.8
Q ss_pred ccccccccCCcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHH
Q psy630 99 NQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSK 165 (347)
Q Consensus 99 ~~~~~~v~~l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~ 165 (347)
...++||+|+ .+++++|+++|+.||.|....+. + .|+.||.. ..+.++|..+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~---------~kg~aFV~--f~~~~~A~~A 89 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--P---------PRNCAFVT--YEKMESADQA 89 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--T---------TTTEEEEE--CSSHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--C---------CCCEEEEE--ECCHHHHHHH
Confidence 4578999996 69999999999999999865553 1 22223333 4456677666
No 500
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.18 E-value=0.048 Score=48.82 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=38.3
Q ss_pred cccccccC--CcccccchhhHHHHhhccccceecccCCCCCccchhHHHHHHHHHHcCCCCHHHHHHHH
Q psy630 100 QACDYLPS--LVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKY 166 (347)
Q Consensus 100 ~~~~~v~~--l~~~~~~e~l~~~f~~fg~v~~g~~~~~~p~~~~~~~~~K~~aw~~~~~~~~~eA~~~y 166 (347)
..++||+| |+..+++++|+++|+.||+|....+... |..||.. .-+.++|+.++
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-----------kgfaFV~--f~~~~~A~~Ai 73 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----------KPYSFAR--YRTTEESKRAY 73 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-----------CSEEEEE--ESSHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------CCEEEEE--ECCHHHHHHHH
Confidence 35789999 5789999999999999999986544321 2223333 34577777774
Done!