RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy630
(347 letters)
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 102 bits (256), Expect = 5e-28
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 93 NMEDRFNQACDYLPSLVK--KLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNA 150
+M F + ++ L + L + L Y YKQ+T+G CNI +PS + + KY A
Sbjct: 1 HMAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 151 WNSLGQMAKSEAMSKYIALLKEVDAGWED 179
W S+ + + +A +Y+ ++ E+ W+D
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEIFPYWQD 89
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 93.0 bits (231), Expect = 2e-24
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 95 EDRFNQACDYLPSLVKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSL 154
+ F++A + + L K +L Y+ YKQATVG N ++P + + K+K++AWN L
Sbjct: 2 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNEL 61
Query: 155 GQMAKSEAMSKYIALLKEVDAGW 177
+K +AM YI ++E+ +
Sbjct: 62 KGTSKEDAMKAYIDKVEELKKKY 84
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 73.1 bits (179), Expect = 3e-17
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W + L+++F ++G++ VM D T S+GFGFVTF ++ VDKV +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 70 DSHVLEGSRLSIQ 82
H L+ + +
Sbjct: 62 SRHELDSKTIDPK 74
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 72.7 bits (178), Expect = 5e-17
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
KIFVG L +++++F +G++ + + D T +GF F+TF+ +E V K+
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 70 DSHVLEGSRLSIQ 82
H + S+ I+
Sbjct: 61 KYHNVGLSKCEIK 73
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 73.1 bits (179), Expect = 8e-17
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60
+S R +F L + +L+ FFS G++ + ++ D+N+ SKG +V F
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 70
Query: 61 EAVDKVFSTDSHVLEGSRLSIQPSDSH-NRM 90
++V L G + +Q S + NR+
Sbjct: 71 QSVPLAIGLTGQRLLGVPIIVQASQAEKNRL 101
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 71.6 bits (175), Expect = 1e-16
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
QL K+F+G L + + L+ F ++G + + VM D NT S+GFGFVT+ E VD
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 67 FSTDSHVLEGSRLSIQPSDS 86
+ H ++G + + + S
Sbjct: 65 MNARPHKVDGRVVEPKRAVS 84
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 71.5 bits (175), Expect = 2e-16
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKN-TGLSKGFGFVTFQNKEAVD 64
+ +KI V N+P+ + E+++ FS +G++ + TG +GFGFV F K+
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 65 KVFST--DSHVLEGSRLSIQPSDSHNRM 90
K F+ S L G RL ++ +DS +
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWADSEVTV 93
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 70.5 bits (172), Expect = 6e-16
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
Q K+F+G L + + L+ ++ ++G++ + VM D + S+GFGFVTF + VD
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 67 FSTDSHVLEGSRLSIQPSDS 86
+ H ++G + + + +
Sbjct: 79 MAARPHSIDGRVVEPKRAVA 98
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 68.5 bits (167), Expect = 2e-15
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+F+G L W + +LK +FS++G++++ ++ D TG S+GFGFV F+ E+VDKV
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 70 DSHVLEGSRLSIQ 82
H L G + +
Sbjct: 61 KEHKLNGKVIDPK 73
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 68.1 bits (166), Expect = 3e-15
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60
+ ++++ + + V LPW + +LK++FS +G+++ V D TG SKGFGFV F
Sbjct: 1 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 60
Query: 61 EAVDKVFSTDSHVLEGSRLSIQPSDS 86
E KV S H+++G + +S
Sbjct: 61 ETQVKVMS-QRHMIDGRWCDCKLPNS 85
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 66.7 bits (162), Expect = 1e-14
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASV-----MFDKNTGLSKGFGFVTFQNKEAVD 64
+++VGN+P+ ++ + FF+ ++ + + K F F+ F++ +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 65 KVFSTDSHVLEGSRLSIQ-PSD 85
+ + D + +G L I+ P D
Sbjct: 63 QAMAFDGIIFQGQSLKIRRPHD 84
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 64.6 bits (157), Expect = 5e-14
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
++VG+L V+ L + FS G I++ V D T S G+ +V FQ ++ T
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 70 -DSHVLEGSRLSIQPS 84
+ V++G + I S
Sbjct: 62 MNFDVIKGKPVRIMWS 77
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 63.1 bits (153), Expect = 2e-13
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+K+F+G LP ++ +++K+ + +G + +++ D TGLSKG+ F + + D+ +
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 69 T-DSHVLEGSRLSIQPSDSHNRMA 91
+ L +L +Q + + A
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAKNA 85
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 62.0 bits (150), Expect = 4e-13
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKN---TGLSKGFGFVTFQNKEAVDKVF 67
+F+ NL ++ + LK FS+ G I + ++ KN LS GFGFV ++ E K
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 68 ST-DSHVLEGSRLSIQPSDSHNRMA 91
H ++G +L ++ S+ + A
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKPA 85
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 61.7 bits (149), Expect = 5e-13
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
KIFVG + + L+ +F +YG+I +M D+ +G +GF FVTF + ++VDK+
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 70 DSHVLEGSRLSIQPS 84
H + G ++ +
Sbjct: 64 KYHTVNGHNCEVRKA 78
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 61.5 bits (149), Expect = 6e-13
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
++V NLP T++ ++L F +YG I+ +++ DK TG +G FV + +E + S
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 70 -DSHVLEGSRLSIQ 82
++ + EG +
Sbjct: 68 LNNVIPEGGSQPLS 81
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 60.5 bits (146), Expect = 1e-12
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
KIFVG L + ++K +F ++G++ +A +MFDK T +GFGFVTF++++ V+KV
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 70 DSHVLEGSRLSIQ 82
H + + +
Sbjct: 61 HFHEINNKMVECK 73
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 64.6 bits (156), Expect = 2e-12
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 340
++N E G L A ++ HL +VQ L+E+ ++N TDSDG L A ++ + E
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270
Query: 341 YLVNSG 346
L G
Sbjct: 271 LLCKRG 276
Score = 52.7 bits (125), Expect = 2e-08
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 311
+ K A E K LV++L + + IN D +G L A + K+ + L ++
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 312 CGADVNVTD 320
GA + D
Sbjct: 276 -GASTDCGD 283
Score = 47.3 bits (111), Expect = 9e-07
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325
+ +L + G L A ++GH++V++ L+++ GADVN D+ G
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Score = 43.0 bits (100), Expect = 3e-05
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENG---LNCLHWACDRGHLKVVQHLIEKCGADVNV 318
A++G +++ +K L ++N D G L + D ++ + HL+ GADVNV
Sbjct: 156 AEKGHVEV-LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Query: 319 TDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
G L A +H L++ L+
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQE 242
Score = 42.3 bits (98), Expect = 4e-05
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 291 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY-GLDYAKAIEHTDLIEYLVN 344
+ L A + +VQ L+E GA+VN + +G + L A + D++E L+
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Score = 32.6 bits (73), Expect = 0.050
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 253 DNEKNIYEWAKEGKLDMLVKQLTKLKDFNIN-QLDENGLNCLHWACDRGHLKVVQHLIEK 311
++ + + + +D+ V+QL + N+N Q +E G LH A +V+ L+
Sbjct: 4 EDNHLLIKAVQNEDVDL-VQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 312 C 312
Sbjct: 62 G 62
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 60.5 bits (146), Expect = 2e-12
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
KIFVG LP+ + L+K+F +G I A V+ D+ TG S+G+GFVT ++ A ++
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 70 DSHVLEGSRLSIQPSDSHNR 89
+ +++G + ++ + +
Sbjct: 72 PNPIIDGRKANVNLAYLGAK 91
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 59.6 bits (144), Expect = 3e-12
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 5 IRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVD 64
+++ ++VGNL + + ++ + FS+ G I + DK + GF FV + ++ +
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 63
Query: 65 KVFST-DSHVLEGSRLSIQ 82
+ L+ +
Sbjct: 64 NAMRYINGTRLDDRIIRTD 82
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 59.4 bits (143), Expect = 6e-12
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
F+GNLP+ V+ +K+FF N KGFG+ F++ +++ S
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 69 TDSHVLEGSRLSIQPSDSHNRM 90
+ L R+ + +D
Sbjct: 76 LNEESLGNKRIRVDVADQAQDK 97
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 58.5 bits (141), Expect = 7e-12
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKE 61
S SIR N ++V LP T++ EL++ FS+YG+I+ + ++ D+ TG+S+G GF+ F +
Sbjct: 1 SASIRDAN-LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 59
Query: 62 AVDKVFST-DSHVLEGSRLSIQ 82
++ + G+ I
Sbjct: 60 EAEEAIKGLNGQKPSGATEPIT 81
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 58.4 bits (141), Expect = 7e-12
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
K+ V NL + VS ++++ F+E+G + A+V +D +G S G V F+ K K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQ 60
Query: 70 -DSHVLEGSRLSIQPSDS 86
+ L+G ++IQ S
Sbjct: 61 YNGVPLDGRPMNIQLVTS 78
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 62.1 bits (149), Expect = 1e-11
Identities = 38/247 (15%), Positives = 84/247 (34%), Gaps = 14/247 (5%)
Query: 109 VKKLDSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMA-------KSE 161
+ + T+L + A A + I + + A + NA + +
Sbjct: 28 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 87
Query: 162 AMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWD 221
+ Y+ + E+ ++ M Y+ ++ E+ ++ +
Sbjct: 88 RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 147
Query: 222 ------ESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLT 275
E ++ + KG + + +A + +VK L
Sbjct: 148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 207
Query: 276 KLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEH 335
K N ++ DE+G + A G ++VV +LI++ GA V D+ A+A H
Sbjct: 208 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNH 266
Query: 336 TDLIEYL 342
++++
Sbjct: 267 HNIVDIF 273
Score = 40.9 bits (94), Expect = 1e-04
Identities = 14/67 (20%), Positives = 31/67 (46%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 339
+ G LH+A ++ +V++L+ + G++ + D DG + A +++
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237
Query: 340 EYLVNSG 346
YL+ G
Sbjct: 238 MYLIQQG 244
Score = 40.1 bits (92), Expect = 2e-04
Identities = 25/207 (12%), Positives = 59/207 (28%), Gaps = 10/207 (4%)
Query: 113 DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKE 172
D +T L L ++ + + + + KS+ +A + M + K
Sbjct: 73 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL 132
Query: 173 VDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESGS---- 228
E + + + + V+ + D + G
Sbjct: 133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 192
Query: 229 -KENEGQTKGWVNVSSMINDESQLDDNEKN--IYEWAKEGKLDMLVKQLTKLKDFNINQL 285
+ D + I A+EG++++ V L + + ++ +
Sbjct: 193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV-VMYLIQ-QGASVEAV 250
Query: 286 DENGLNCLHWACDRGHLKVVQHLIEKC 312
D A H +V + ++C
Sbjct: 251 DATDHTARQLAQANNHHNIVD-IFDRC 276
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 57.8 bits (139), Expect = 2e-11
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
I V N+P+TVS +E+ FF Y I + + G+ G V F++++
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 69 T-DSHVLEGSRLSIQ 82
+ + ++ +
Sbjct: 70 DLNDRPIGSRKVKLV 84
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 57.7 bits (139), Expect = 2e-11
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
Q ++VG L VS L + F + G ++N + D+ TG +G+GFV F ++E D
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 67 FST-DSHVLEGSRLSIQPSDSHNR 89
D L G + + + +HN+
Sbjct: 68 IKIMDMIKLYGKPIRVNKASAHNK 91
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 56.9 bits (137), Expect = 2e-11
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+ V LP ++ EL F G I +M D TG S G+ FV F ++ +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 70 -DSHVLEGSRLSIQPS 84
+ + RL + +
Sbjct: 64 LNGITVRNKRLKVSYA 79
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 57.4 bits (138), Expect = 3e-11
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
++FV NL +T S +L+K FS YG + D T KGF FVTF E K ++
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 69 T-DSHVLEGSRLSIQPSDSHNRMAE 92
D V +G L + PS ++
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQ 93
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 59.2 bits (142), Expect = 3e-11
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60
+ + KIFVG + + L+ +F +YG+I +M D+ +G +GF FVTF +
Sbjct: 90 RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 149
Query: 61 EAVDKVFSTDSHVLEGSRLSIQPSDSHNRMA 91
++VDK+ H + G ++ + S MA
Sbjct: 150 DSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 180
Score = 59.2 bits (142), Expect = 4e-11
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
QL K+F+G L + + L+ F ++G + + VM D NT S+GFGFVT+ E VD
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 67 FSTDSHVLEGSRLSIQPSDSHNRMAENMEDRFNQACDYLPSLVKKLDSSTLLKFYALYKQ 126
+ H ++G + + + ++ ++ + + + L ++ Y +
Sbjct: 65 MNARPHKVDGRVVEPKRA-VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 123
Query: 127 ATVGQCNIDKPSWYN 141
V + D+ S
Sbjct: 124 IEVIEIMTDRGSGKK 138
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 61.5 bits (148), Expect = 4e-11
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDS 321
+ G L + VK L + + + N + LH A GH +V ++L++ A VN
Sbjct: 8 SFMGHLPI-VKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAK 64
Query: 322 DGDYGLDYAKAIEHTDLIEYLVN 344
D L A I HT++++ L+
Sbjct: 65 DDQTPLHCAARIGHTNMVKLLLE 87
Score = 59.2 bits (142), Expect = 2e-10
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 339
++N + G + LH A +GH +V L++ GA N SDG L AK + + +
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVT 379
Query: 340 EYL 342
+ L
Sbjct: 380 DVL 382
Score = 54.6 bits (130), Expect = 6e-09
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 293 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
LH A GHL +V++L+++ GA NV++ + L A HT++ +YL+ +
Sbjct: 4 LHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56
Score = 51.5 bits (122), Expect = 6e-08
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 340
+ + + G LH A G ++V + L+E+ A N +G L A + D+++
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVK 182
Query: 341 YLVNSG 346
L+ G
Sbjct: 183 LLLPRG 188
Score = 47.7 bits (112), Expect = 1e-06
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Query: 238 WVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWAC 297
+ + ++ + A + + + L + +D + N +NGL LH A
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAV 173
Query: 298 DRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 344
+L +V+ L+ + G + +G L A ++ L+
Sbjct: 174 HHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219
Score = 39.6 bits (91), Expect = 4e-04
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL--IEKCGADVNVT 319
A++G D+ V L K + N++ +G L A G++ V L + + V V+
Sbjct: 338 AQQGHTDI-VTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 395
Query: 320 DSDG 323
D
Sbjct: 396 DKHR 399
Score = 38.8 bits (89), Expect = 7e-04
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 34/118 (28%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK---------- 311
A+ G ++ K L + +N ++ LH A GH +V+ L+E
Sbjct: 41 ARAGHTEV-AKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 98
Query: 312 ----------------------CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347
A G L A + E L+ +
Sbjct: 99 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156
Score = 35.0 bits (79), Expect = 0.013
Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 11/190 (5%)
Query: 166 YIALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQE 225
L V D + + P+ A + Y L + + + + + S
Sbjct: 166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 225
Query: 226 SGSKEN---------EGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTK 276
+ S + EG + + S + + + + + + L K
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285
Query: 277 LKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHT 336
++ G LH A G++K+V+ + + ADVN G L A HT
Sbjct: 286 -HGVMVDATTRMGYTPLHVASHYGNIKLVKF-LLQHQADVNAKTKLGYSPLHQAAQQGHT 343
Query: 337 DLIEYLVNSG 346
D++ L+ +G
Sbjct: 344 DIVTLLLKNG 353
Score = 31.5 bits (70), Expect = 0.15
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 247 DESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQ 306
+ N A +VK L + + + NG LH A + ++V +
Sbjct: 157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVAR 215
Query: 307 HLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEY 341
L++ G N G L A H +++
Sbjct: 216 SLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVAL 249
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 57.3 bits (138), Expect = 4e-11
Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+++ NLP+ ++ E+ F +YG I + NT ++G +V +++
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 69 T-DSHVLEGSRLSIQPSDSHNRMAENMEDRFNQA 101
+ L + ++ NR + M+ + +
Sbjct: 65 HLSGFNVCNRYLVVLYYNA-NRAFQKMDTKKKEE 97
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 56.8 bits (137), Expect = 4e-11
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 9 NKIFVGNL-PWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+++F+GNL V ++++ FS+YG+I+ SV GF FV + N+
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAV 67
Query: 68 ST-DSHVLEGSRLSIQPSDS 86
+ D ++ G L I +
Sbjct: 68 AGEDGRMIAGQVLDINLAAE 87
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 58.9 bits (141), Expect = 2e-10
Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 4/148 (2%)
Query: 186 NWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMI 245
N+D + + L D+ I + +
Sbjct: 153 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 212
Query: 246 NDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHL 302
N Q NEK K G+ + + LK +N D NG CL+ A G++
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272
Query: 303 KVVQHLIEKCGADVNVTDSDGDYGLDYA 330
+V L++ GAD + + G +D+
Sbjct: 273 SIVDALLDY-GADPFIANKSGLRPVDFG 299
Score = 53.5 bits (127), Expect = 9e-09
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 240 NVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNIN-QLDENGLNCLHWACD 298
+ N S+ + + + + L + N+N +DE+G LHW
Sbjct: 58 LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN-TQLNLNIPVDEHGNTPLHWLTS 116
Query: 299 RGHLKVVQHLIEKCGADVNVTDSDGDYGLDYA 330
+L++V+HL++ G++ D+ G+ L A
Sbjct: 117 IANLELVKHLVKH-GSNRLYGDNMGESCLVKA 147
Score = 44.3 bits (103), Expect = 1e-05
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK-- 311
+ A + LD+L+ + K ++ I + + ++++L K
Sbjct: 188 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 247
Query: 312 CGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
+N DS+GD L+ A + + +++ L++ G
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282
Score = 31.9 bits (71), Expect = 0.086
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 252 DDNEKNIYEWAKEGKLDMLVKQLTKLKDF---NINQLDENGLNCLHWACDRGHLKVVQHL 308
D+ +K E + L ++++ + N N + L+ V
Sbjct: 32 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91
Query: 309 IEKCGADVNV-TDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
++N+ D G+ L + +I + +L+++LV G
Sbjct: 92 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 54.3 bits (130), Expect = 2e-10
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+ V L + +L++ FS+YG I + S+++D+ + S+GF FV F+N + +
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 69 T-DSHVLEGSRLSI 81
+ L+G R+ +
Sbjct: 70 RANGMELDGRRIRV 83
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 54.3 bits (130), Expect = 3e-10
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60
M+ + R ++VG L V L F +G I + + D T +GF FV F+
Sbjct: 1 MATTKR---VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 57
Query: 61 EAVDKVFST-DSHVLEGSRLSIQPS 84
E + L G + + +
Sbjct: 58 EDAAAAIDNMNESELFGRTIRVNLA 82
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 53.9 bits (129), Expect = 4e-10
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+ +FVG ++ +EL++FFS+YG +M+ + F FVTF + + +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIAQSLCG 60
Query: 69 TDSHVLEGSRLSIQPSDS 86
+ +++G + I ++
Sbjct: 61 -EDLIIKGISVHISNAEP 77
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 53.6 bits (128), Expect = 4e-10
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 11 IFVGNLPWTVSHNELKKFFSEYGQIMNAS-VMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
IF+GNL + L FS +G I+ +M D +TG SKG+ F+ F + +A D
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 70 -DSHVLEGSRLSIQPSDS 86
+ L +++ +
Sbjct: 61 MNGQYLCNRPITVSYAFK 78
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.1 bits (129), Expect = 5e-10
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+ + LP+ S E+ +FFS + N + G S G FV F ++E +K
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 75
Query: 69 TDSHVLEGSRLSIQPS 84
+ + I S
Sbjct: 76 KHKERIGHRYIEIFKS 91
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 53.3 bits (127), Expect = 8e-10
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+ N+P++++ ++ +F NA + N G G V F+N++ K
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 69
Query: 70 DSHVLEGSRLSIQPS 84
L G +
Sbjct: 70 HRKKLNGREAFVHVV 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 52.7 bits (126), Expect = 1e-09
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKE 61
S +R + NL + ++ +ELK+ F + +I G SKG ++ F+++
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYIEFKSEA 64
Query: 62 AVDKVFST-DSHVLEGSRLSIQPSDS 86
+K ++G +S+ +
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGE 90
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 52.8 bits (126), Expect = 1e-09
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+I+VGNLP + +++ F +YG I + + + F FV F++ +
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPRDAEDAVY 71
Query: 69 T-DSHVLEGSRLSIQPSDS 86
D + +G RL ++ S
Sbjct: 72 GRDGYDYDGYRLRVEFPRS 90
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 52.3 bits (125), Expect = 1e-09
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
IF+ NL ++ + L FS +G I++ V+ D+N SKG+GFV F+ +EA ++
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 66
Query: 69 T-DSHVLEGSRLSIQPSDS 86
+ +L ++ + S
Sbjct: 67 KMNGMLLNDRKVFVGRFKS 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 52.0 bits (124), Expect = 1e-09
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+ V LP ++ E + F G+I + ++ DK TG S G+GFV + + + +K +T
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 70 -DSHVLEGSRLSIQPS 84
+ L+ + + +
Sbjct: 64 LNGLRLQTKTIKVSYA 79
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 52.0 bits (124), Expect = 2e-09
Identities = 12/89 (13%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNA--SVMFDKNTGLSKGFGFVTFQNKEAVDKV- 66
++F+G +P E+ + ++ + + + ++GF FV +++ A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 67 --FSTDSHVLEGSRLSIQPSDSHNRMAEN 93
L G ++++ ++ + E+
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVDED 91
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.6 bits (123), Expect = 2e-09
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
I V NL +L++ F +G I + DK TG SKGF F++F +E + +
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 69 T-DSHVLEGSRLSIQPS 84
+ L+++ +
Sbjct: 69 GVSGFGYDHLILNVEWA 85
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.2 bits (122), Expect = 3e-09
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+NK+++GNL V+ ++L++ F + + L G+ FV + ++ +
Sbjct: 1 MNKLYIGNLSPAVTADDLRQLFGDRKLPL------AGQVLLKSGYAFVDYPDQNWAIRAI 54
Query: 68 ST--DSHVLEGSRLSIQPSDS 86
T L G + + S S
Sbjct: 55 ETLSGKVELHGKIMEVDYSVS 75
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 51.0 bits (121), Expect = 4e-09
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60
+ + + + +F+ NL + L + ++G + V+ +T SKG F F +
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 60
Query: 61 EAVDKV-------FSTDSHVLEGSRLSIQPSDSHNRMA 91
EA K L+G +L + + + + A
Sbjct: 61 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 98
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 50.8 bits (121), Expect = 4e-09
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKE 61
S S ++ V N+P+ +L++ F ++G+I++ ++F++ SKGFGFVTF+N
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 62
Query: 62 AVDKVFST-DSHVLEGSRLSIQPSDS 86
D+ V+EG ++ + + +
Sbjct: 63 DADRAREKLHGTVVEGRKIEVNNATA 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 50.3 bits (120), Expect = 6e-09
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 4 SIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAV 63
+ Q +++FVGNLP ++ E++K F +YG+ + DK FGF+ + +
Sbjct: 4 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLA 57
Query: 64 DKVFST-DSHVLEGSRLSIQPSDS 86
+ D+ L G +L ++ +
Sbjct: 58 EIAKVELDNMPLRGKQLRVRFACH 81
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.9 bits (121), Expect = 6e-09
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+F+ +LP +L + F +G +++A V DK T LSK FGFV++ N +
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 69 T-DSHVLEGSRLSIQPSDSHNR 89
+ + + RL +Q S N
Sbjct: 79 SMNGFQIGMKRLKVQLKRSKND 100
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 49.8 bits (118), Expect = 9e-09
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+++ N P + + ++ + + + + S+ F ++ +KE
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 70 -DSHVLEGSRLSIQPSD 85
+ +EG L + S+
Sbjct: 63 LNGLKIEGYTLVTKVSN 79
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.7 bits (118), Expect = 2e-08
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+ + + LP+ + N++ FFS + + G G V F E +
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRV--HIEIGPDGRVTGEADVEFATHEDAVAAMA 73
Query: 69 TDSHVLEGSRLSIQPS 84
D ++ + + +
Sbjct: 74 KDKANMQHRYVELFLN 89
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 48.5 bits (115), Expect = 3e-08
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEY-GQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+ I++ NL + +ELKK + + + +G FV F+ +
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 68 ST-DSHVLEGSRLSIQPSDSHNRMAENM 94
+ + IQ + + + + M
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDIIAKM 91
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.2 bits (114), Expect = 4e-08
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK-VF 67
K+FVG L + + L++ FS+YGQI V+ D+ T S+GFGFVTF+N + +
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 68 STDSHVLEGSRLSIQPS 84
+ + ++G ++ + +
Sbjct: 66 AMNGKSVDGRQIRVDQA 82
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 51.8 bits (123), Expect = 4e-08
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 12/125 (9%)
Query: 227 GSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDML--VKQLTKLKDFNINQ 284
+ N + W + + +E + A G L + L D +
Sbjct: 69 YAHYNRNAKQLWSDA------HKKGIKSEVICFVAAITGCSSALDTLCLLLT-SDEIVKV 121
Query: 285 LDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSD--GDYGLDYAKAIEHTDLIEYL 342
+ A + GHL V+ L E + + A H ++ L
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180
Query: 343 VNSGS 347
Sbjct: 181 CELAP 185
Score = 44.9 bits (105), Expect = 7e-06
Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 12/111 (10%)
Query: 241 VSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG 300
+ ++L + +G D L + L L D
Sbjct: 239 NPFIARHVNRLKEMHDAFKLSNPDGVFD--------LVTKSECLQGFYMLRNLIRRNDEV 290
Query: 301 HLKVVQHLIE----KCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSGS 347
L ++ L+ K A D + L A + + L++ S
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 341
Score = 39.5 bits (91), Expect = 4e-04
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG--ADVNVT 319
A+ G L +L + + + + A + GHL V+ L E A +
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193
Query: 320 DSDGDYGLDYAKAIEHTDLIEYLVNSG 346
+ A H ++I +L++
Sbjct: 194 AENYYAFRWAAVGRGHHNVINFLLDCP 220
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 50.6 bits (119), Expect = 5e-08
Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 4/194 (2%)
Query: 149 NAWNSLGQMAKSEAMSKYIALLKEVDAGWEDKEQEEINWDWKPNQKAM---SKYIALLNE 205
+ +N+L Q A+ + + + A S
Sbjct: 34 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 93
Query: 206 VDASWEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEG 265
A+ + E N+D N + + D +D
Sbjct: 94 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 153
Query: 266 KLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325
+ + QL N+N +G + LH A RG L +V+ L+ GAD ++ + D
Sbjct: 154 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDT 212
Query: 326 GLDYAKAIEHTDLI 339
L A++ D++
Sbjct: 213 PLMVARSRRVIDIL 226
Score = 46.4 bits (108), Expect = 2e-06
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 287 ENGLNCLHWACDRGHLKVVQHLIE---KCGADVNVTDSDGDYGLDYA 330
E+G LH A +G+L V L+ + G ++++ ++ L A
Sbjct: 1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47
Score = 36.4 bits (82), Expect = 0.003
Identities = 20/194 (10%), Positives = 57/194 (29%), Gaps = 5/194 (2%)
Query: 113 DSSTLLKFYALYKQATVGQCNIDKPSWYNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKE 172
T L + +V + + + + A + + + +
Sbjct: 39 LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 98
Query: 173 VDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESGSKENE 232
E + + + + + LL E A + + + EN
Sbjct: 99 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV---ENN 155
Query: 233 GQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNC 292
+ + + N +Q+ ++ + G L + V+ L + + + + +
Sbjct: 156 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL-VRTLVR-SGADSSLKNCHNDTP 213
Query: 293 LHWACDRGHLKVVQ 306
L A R + +++
Sbjct: 214 LMVARSRRVIDILR 227
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 50.9 bits (120), Expect = 7e-08
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 7/166 (4%)
Query: 177 WEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESGSKENEGQTK 236
E + + ++ IA ++ +++ + E+ + +
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA 181
Query: 237 GWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWA 296
S IND ++ A +G ++L +++N D +G LH A
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGWTPLHAA 239
Query: 297 CDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYL 342
G + + L+E D+ + G D A D++ YL
Sbjct: 240 AHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADE----DILGYL 280
Score = 46.6 bits (109), Expect = 2e-06
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDEN-------GLNCLHWACDRGHLKVVQHLIEKCGA 314
AK+ + + L + + D + AC G + V L+E+ GA
Sbjct: 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GA 64
Query: 315 DVNVTDSDGDYGLDYAKAIEHTDLIEY 341
D+N + DG L A ++ D++++
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKF 91
Score = 44.7 bits (104), Expect = 6e-06
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 3/181 (1%)
Query: 168 ALLKEVDAGWEDKEQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESG 227
AL + D + + NQ +I L + D + I+ +
Sbjct: 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 228 SKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKL--KDFNINQL 285
+ E + + +++++ +I KE + ML L N +
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195
Query: 286 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345
++G LH A +G+ +V++ LI+ DVN+ D DG L A + LV +
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 346 G 346
Sbjct: 255 L 255
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKC 312
G + V +L + + +IN + +GL LH AC ++ +V+ L+E
Sbjct: 48 CSSGDTEE-VLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 47.0 bits (111), Expect = 8e-08
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 9 NKIFVGNLPWTVSHNE-LKKFFSEYGQI-MNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
+I + NL + L++ F +G I K + F+ F+NK++ ++
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 67 FSTDSHVLEGSRLSIQPSD 85
+ +L +S+ +D
Sbjct: 65 LQMNRSLLGNREISVSLAD 83
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 48.0 bits (113), Expect = 9e-08
Identities = 13/92 (14%), Positives = 32/92 (34%)
Query: 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK 65
+++ LP+ + + FF + + ++ + G + G GFV F+N+
Sbjct: 16 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 75
Query: 66 VFSTDSHVLEGSRLSIQPSDSHNRMAENMEDR 97
+ + + P + + R
Sbjct: 76 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIR 107
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 47.0 bits (111), Expect = 1e-07
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+FV ++ +E+++ F +YG+I N + D+ TG SKG+ V ++ +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 69 T-DSHVLEGSRLSIQ 82
+ + G + +
Sbjct: 68 ALNGAEIMGQTIQVD 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.4 bits (112), Expect = 1e-07
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK 65
R L +FVGN+P+ + +LK FSE G +++ +++D+ TG KG+GF +Q++E
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 66 VFST-DSHVLEGSRLSIQPSDSHNRMAE 92
+ G L + + S E
Sbjct: 66 AMRNLNGREFSGRALRVDNAASEKNKEE 93
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 47.1 bits (111), Expect = 1e-07
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMF--------DKNTGLSKGFGFVTFQNK 60
+ I+V L +V+ ++L FF + G + DK TG KG V++++
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 61 EAVDKVFST-DSHVLEGSRLSIQPS 84
D +GS+L + +
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLA 93
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 49.0 bits (115), Expect = 2e-07
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 339
+N D+ G L A GH L+EK GA+ ++ D+ G D A + +
Sbjct: 163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVK 219
Query: 340 EYLVNSG 346
++ +N+
Sbjct: 220 KFFLNNV 226
Score = 46.7 bits (109), Expect = 1e-06
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 293 LHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
LH AC VQ L+ + + D DG L ++ + + ++ +L++
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57
Score = 35.2 bits (79), Expect = 0.006
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 262 AKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 311
E + V++L K + Q D++G LHW+ ++ L+ K
Sbjct: 8 CMENEFFK-VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56
Score = 30.6 bits (67), Expect = 0.20
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 258 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD 315
++ EG D L + + +D G A + +V + + D
Sbjct: 176 LFHALAEGHGDA-AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN-VVD 228
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.3 bits (109), Expect = 2e-07
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+++ NL V+ +L F+ + + + F TG +G F+TF NKE +
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 69 T-DSHVLEGSRLSIQPSDS 86
+ + L G L I+ +
Sbjct: 79 LVNGYKLYGKILVIEFGKN 97
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 46.2 bits (109), Expect = 3e-07
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+I V NL + V+ + L + FS++G ++ ++ + + + + +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLS 64
Query: 70 -DSHVL--EGSRLSIQPSDSHNRMAENMEDR---FNQACDYLPS 107
D + L I S + + D+ + + LPS
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTR--PDLPS 106
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 45.5 bits (107), Expect = 3e-07
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+++ P + +++K++ + GQ++N M KG FV F + E+ K T
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFVET 66
Query: 70 DSHVLEGSRLSIQPSD 85
+ + L I D
Sbjct: 67 PGQKYKETDLLILFKD 82
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 45.2 bits (106), Expect = 3e-07
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
+ V NLP + + N++ K+F G I++ V + + F + F + +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA--DSLKKNFRFARIEFARYDGALAAITK 59
Query: 70 DSHVLEGSRLSIQ 82
V+ + + +
Sbjct: 60 THKVVGQNEIIVS 72
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 45.7 bits (107), Expect = 3e-07
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+F+GNL S ELK SE + +V+ + TG ++ FG+V F++ E ++K
Sbjct: 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEKALE 72
Query: 69 TDSHVLEGSRLSIQPSDS 86
+ G+ + ++
Sbjct: 73 LTGLKVFGNEIKLEKPKG 90
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 45.6 bits (107), Expect = 3e-07
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 4 SIR--QLNKIFVGNLPWTVSHNELKKFF---SEYGQIMNASVMFDKNTGLSKGFGFVTFQ 58
S+R Q N +FV L ++ E+ K ++G+I + + S+G +
Sbjct: 2 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV 61
Query: 59 N----KEAVDKVFSTDSHVLEGSRL 79
++A+ + ++ V++G L
Sbjct: 62 TYIRSEDALRAIQCVNNVVVDGRTL 86
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 45.4 bits (107), Expect = 3e-07
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKE 61
+++ + ++V NL + S ++K F+ V + + FV F N+E
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNRE 55
Query: 62 AVDKVFST-DSHVLEGSRLSIQPSDSHNR 89
+ + VL+GS + + + ++
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTLAKPVDK 84
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 45.7 bits (108), Expect = 3e-07
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 10 KIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST 69
++ G + ++ +++ FS +GQIM V +K + FV F E+ +
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIVS 73
Query: 70 -DSHVLEGSRLSIQ 82
+ +EG +
Sbjct: 74 VNGTTIEGHVVKCY 87
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 45.4 bits (107), Expect = 4e-07
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1 MSNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK 60
M Q ++VGNL V+ + + FS+ G + ++ + + + + FV F
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEH 58
Query: 61 EAVDKVFST-DSHVLEGSRLSIQPSDS 86
+ + + G + + + +
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATT 85
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 47.3 bits (111), Expect = 6e-07
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 339
+ N D G LH ACD ++ + L+ + GA + + + + L AK ++
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAKG-GLGLIL 217
Query: 340 EYLV 343
+ +V
Sbjct: 218 KRMV 221
Score = 43.0 bits (100), Expect = 2e-05
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 340
+N +++NG LH+A + ++ L+E GA+ + D + A A + +I
Sbjct: 95 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIH 153
Query: 341 YL 342
L
Sbjct: 154 IL 155
Score = 39.6 bits (91), Expect = 2e-04
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 33/122 (27%)
Query: 257 NIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRG---------------- 300
+ A GKL+ L + + K + D++ LHWAC G
Sbjct: 6 MVCNLAYSGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64
Query: 301 ----------------HLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVN 344
+ + GA VN + +G L YA + ++ L+
Sbjct: 65 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124
Query: 345 SG 346
G
Sbjct: 125 GG 126
Score = 36.9 bits (84), Expect = 0.002
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 258 IYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVN 317
++ A + + ++ L + N + D +H A +G+LK++ L+ N
Sbjct: 107 LHYAASKNRHEI-AVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA-STN 163
Query: 318 VTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
+ D++G+ L A E + + LV+ G
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQG 192
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 45.3 bits (106), Expect = 1e-06
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 7 QLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV 66
L + V +P TV +L++ F YG I + ++ D+ T S+G+GFV FQ+ + +
Sbjct: 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100
Query: 67 FST-DSHVLEGSRLSIQPSDS 86
+ + + RL + + S
Sbjct: 101 IAGLNGFNILNKRLKVALAAS 121
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 43.1 bits (101), Expect = 2e-06
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK 65
R+ N ++V ++ L+ FS +G I++ S+ + FVT++ E+ D+
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTYEKMESADQ 54
Query: 66 VFST-DSHVLEGSRLSIQPS 84
+ + +E +L + +
Sbjct: 55 AVAELNGTQVESVQLKVNIA 74
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 43.4 bits (102), Expect = 2e-06
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+ V P + + + F++YG I+ + N + + +Q+K K S
Sbjct: 5 TWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTGN------WMHIRYQSKLQARKALS 57
Query: 69 TDSHVLEGSRL 79
D + S +
Sbjct: 58 KDGRIFGESIM 68
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 46.2 bits (108), Expect = 2e-06
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 291 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
LH A + V++ L++ GAD G L A + L L G
Sbjct: 194 TPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248
Score = 45.9 bits (107), Expect = 2e-06
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 282 INQLDENGLNCLHWACDRGHLKVVQHLIEKCGAD---VNVTDSDGDYGLDYA 330
+ E+G LH A H + L+ A +++ + G L A
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLA 52
Score = 40.8 bits (94), Expect = 1e-04
Identities = 25/211 (11%), Positives = 59/211 (27%), Gaps = 19/211 (9%)
Query: 122 ALYKQATVGQCNIDKPSW-YNMEAKSKYNAWNSLGQMAKSEAMSKYIALLKEVDAGWEDK 180
AL+ A +G+ + + + ++ +A +L +
Sbjct: 48 ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107
Query: 181 EQEEINWDWKPNQKAMSKYIALLNEVDASWEDKEQEEINWDESQESGSKENEGQTKGWVN 240
+ + S A ++ ++E + +W E+ + +G T V
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENYDGHTPLHVA 165
Query: 241 VSSMINDESQL-------------DDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDE 287
V + +L ++ + + ++ L K +
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV-LELLLK-AGADPTARMY 223
Query: 288 NGLNCLHWACDRGHLKVVQHLIEKCGADVNV 318
G L A R + + + L GA
Sbjct: 224 GGRTPLGSALLRPNPILARLLRAH-GAPEPE 253
Score = 32.4 bits (72), Expect = 0.064
Identities = 11/86 (12%), Positives = 19/86 (22%), Gaps = 2/86 (2%)
Query: 262 AKEGKLDMLVKQLTKLKDFN-INQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 320
L L ++ ++ G LH A G V+ L +
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76
Query: 321 SDGDYGLDYAKAIEHTDLIEYLVNSG 346
A + L+
Sbjct: 77 GGHTAL-HLACRVRAHTCACVLLQPR 101
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 41.7 bits (97), Expect = 1e-05
Identities = 7/92 (7%), Positives = 22/92 (23%), Gaps = 12/92 (13%)
Query: 9 NKIFVGNLPWTVSH-----NELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAV 63
+ + V + + F Y + S + F N +
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF------KSFKRVRINFSNPLSA 59
Query: 64 DK-VFSTDSHVLEGSRLSIQPSDSHNRMAENM 94
G + + + + + + ++
Sbjct: 60 ADARLRLHKTEFLGKEMKLYFAQTLHIGSSHL 91
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 41.3 bits (96), Expect = 1e-05
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 6 RQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDK 65
R ++ V LP + S +LK E G + A V D G V + KE ++
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLRKEDMEY 65
Query: 66 VFST-DSHVLEGSRLSIQ 82
D
Sbjct: 66 ALRKLDDTKFRSHEGETS 83
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 43.2 bits (100), Expect = 1e-05
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 339
N + D+ L A G + + L++ A+ +TD D A H D++
Sbjct: 147 ANRDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERLHHDIV 205
Query: 340 EYL 342
L
Sbjct: 206 RLL 208
Score = 34.4 bits (77), Expect = 0.012
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 244 MINDESQLDDNEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLK 303
+ DD ++ A K L N D A +R H
Sbjct: 145 HHANRDAQDDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHD 203
Query: 304 VVQHL 308
+V+ L
Sbjct: 204 IVRLL 208
Score = 30.9 bits (68), Expect = 0.16
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 281 NIN-QLDENGLNCLHWACDRGHLKVVQHLIEKC 312
+N +D+ G LH A + L++
Sbjct: 14 ELNATMDKTGETSLHLAARFARADAAKRLLDAG 46
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 40.1 bits (93), Expect = 2e-05
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST- 69
+++ L + +L K YG+I++ + DK T KG+GFV F + A K +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 70 DSHVLEGSRL 79
+ ++
Sbjct: 61 KASGVQAQMA 70
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 41.4 bits (95), Expect = 4e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 291 NCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDY 325
N L A RG L+ + L++ +VN + G
Sbjct: 3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRT 36
Score = 34.9 bits (78), Expect = 0.005
Identities = 13/102 (12%), Positives = 25/102 (24%)
Query: 210 WEDKEQEEINWDESQESGSKENEGQTKGWVNVSSMINDESQLDDNEKNIYEWAKEGKLDM 269
+ + G + D + D+ A +
Sbjct: 54 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 113
Query: 270 LVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEK 311
+V+ L K N+ + G A G +VV +
Sbjct: 114 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155
Score = 31.4 bits (69), Expect = 0.085
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 286 DENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNS 345
D G LH A GHL+VV+ L++ ++V + GD D A+ +++ + +
Sbjct: 96 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155
Query: 346 G 346
G
Sbjct: 156 G 156
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.3 bits (91), Expect = 5e-05
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK-EAVDKVF 67
+ I V NLP + E+ +Y +K FVT N +A + +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDR-------NKRTAFVTLLNGEQAQNAIQ 58
Query: 68 STDSHVLEGSRLSIQPSDSHNRMA 91
+ G L +Q + +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTDALLC 82
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 40.6 bits (93), Expect = 7e-05
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 293 LHWACDRGHLKVVQHLIEKCGADVNVTDSDG 323
L A RG ++ V+ L+ + + + G
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFG 36
Score = 36.3 bits (82), Expect = 0.002
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLI 339
++N D G +H A GH VV L + +D++ D+ G L+ A DL+
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLV 149
Query: 340 EYLVN 344
+ L
Sbjct: 150 DILQG 154
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.2 bits (91), Expect = 7e-05
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 8 LNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
++ + + + +YG++ +V D G +V F+ +E +K
Sbjct: 27 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAV 85
Query: 68 ST-DSHVLEGSRLSIQPS 84
++ G + + S
Sbjct: 86 IDLNNRWFNGQPIHAELS 103
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 37.7 bits (87), Expect = 2e-04
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+++VG L S L + F +G I + + F ++ +++ +A +
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAACA 71
Query: 69 T-DSHVLEGSRLSIQ 82
L G ++
Sbjct: 72 KMRGFPLGGPDRRLR 86
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 37.2 bits (85), Expect = 2e-04
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST- 69
I + LP V++ E+ S+Y + KG FVT N E + +T
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 70 DSHVLEGSRLSIQ--PSDS 86
L LS+Q P+D+
Sbjct: 54 HQSRLRERELSVQLQPTDA 72
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 39.5 bits (90), Expect = 3e-04
Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 254 NEKNIYEWAKEGKLDMLVKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHLIEKCG 313
N A +V+ L L Q NG LH A D + +V L+ KCG
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCG 168
Query: 314 ADVNVTDSDGDYGLDYAKAIEHTDLIEYLVNSG 346
ADVN G T + + L
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201
Score = 39.5 bits (90), Expect = 3e-04
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 288 NGLNCLHWACDRGHLKVVQHLIEKC---GADVNVTDSDGDYGLDYAKAIEH 335
+G + LH A + +I + A +N ++ L A
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51
Score = 32.6 bits (72), Expect = 0.049
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGD 324
++N++ G + R ++ Q L + ++ + D
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.4 bits (86), Expect = 3e-04
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 11 IFVGNLP-WTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVD---KV 66
+ + + +L + +G I N ++ N F+ E
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMATTEDAQAAVDY 64
Query: 67 FSTDSHVLEGSRLSIQPSDSHNRM 90
++T ++ G + + S + R+
Sbjct: 65 YTTTPALVFGKPVRVHLSQKYKRI 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 37.0 bits (85), Expect = 5e-04
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 9 NKIFVGNL-PWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVF 67
+ + V NL P V+ L F YG + ++F+K V +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLAM 57
Query: 68 ST-DSHVLEGSRLSIQPSDSHN-RMAENMEDRFNQACDYLPS 107
S + H L G + I S N ++ ++ DY S
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS 99
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 36.1 bits (83), Expect = 0.001
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 23 NELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST-DSHVLEGSRLSI 81
+L+ S++GQI + G V+F++ E D T D G +++
Sbjct: 34 EDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 82 QPSD 85
Q D
Sbjct: 90 QAWD 93
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.5 bits (81), Expect = 0.001
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV-- 66
+ + N+P +VS +LK FS G + V K + + + E +
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQALI 66
Query: 67 FSTDSHVLEGSRLSIQPSDS 86
+ + E L + S S
Sbjct: 67 DLHNHDLGENHHLRVSFSKS 86
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.5 bits (81), Expect = 0.001
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+++ NLP ++ EL+ +GQ+++ + + ++G S+G GF ++ E + V
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTEKCEAVIG 77
Query: 69 T-DSHVLEGSRLSIQPS 84
+ ++ P+
Sbjct: 78 HFNGKFIKTPPGVSAPT 94
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 36.4 bits (82), Expect = 0.002
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTDSDGDYGLDYAKAIEHTDLIE 340
++N D + LHWA + H +VV+ L+ K GADV+ D + + DL E
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 341 YL 342
L
Sbjct: 151 IL 152
Score = 33.7 bits (75), Expect = 0.015
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 271 VKQLTKLKDFNINQLDENGLNCLHWACDRGHLKVVQHL 308
V +L +++ + + D G+ + + L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 30.2 bits (66), Expect = 0.21
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 293 LHWACDRGHLKVVQHLIEKCGADVN 317
L A G V+ L+ GA
Sbjct: 6 LLEAARAGQDDEVRILMAN-GAPFT 29
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.1 bits (80), Expect = 0.002
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFST- 69
+ G L VS N+L + G + + +K + F ++ E + + T
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYVTL 76
Query: 70 -DSHVLEGSRLSI 81
V++ I
Sbjct: 77 NGKEVVDDLGQKI 89
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 35.4 bits (80), Expect = 0.003
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 288 NGLNCLHWACDRGHLKVVQHLIEKCGADVN-VTDSDGDYGLDYAKAIE--HTDLIEYLVN 344
+G LH A +++V + L+E GA V +T SD D + +E +T ++L
Sbjct: 66 DGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124
Score = 31.2 bits (69), Expect = 0.068
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 290 LNCLHWACDRGHLKVVQHLIEKCGADVNV 318
L L + G +VQ +I + D ++
Sbjct: 2 LALLLDSSLEGEFDLVQRIIYE-VDDPSL 29
Score = 30.4 bits (67), Expect = 0.12
Identities = 3/34 (8%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 281 NINQLDENGLN---CLHWACDRGHLKVVQHLIEK 311
+ + + + + G+ + Q L
Sbjct: 92 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 35.0 bits (79), Expect = 0.005
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 39/129 (30%)
Query: 258 IYEWAKEGKLDMLVKQLTKLKDFN----INQLDENGLNCLHWAC---DRGHLKVVQHLIE 310
+ E K + L++ D + E LH A DR L +V L++
Sbjct: 10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69
Query: 311 --------------------------------KCGADVNVTDSDGDYGLDYAKAIEHTDL 338
+ A + + + G+ LD AK ++H
Sbjct: 70 NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 129
Query: 339 IEYLVNSGS 347
E L + S
Sbjct: 130 EELLTQALS 138
Score = 33.0 bits (74), Expect = 0.020
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 281 NINQLDENGLNCLHWACDRGHLKVVQHLIEKCGADVNVTD 320
+I +E+G L A H + L + N
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 145
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 34.0 bits (77), Expect = 0.005
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV-- 66
+ V L +V +L + ++G I +M K V F+N ++ +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69
Query: 67 -FSTDSHVLEGSRLSIQPSDS 86
+ + G + S S
Sbjct: 70 FAADVPVYIAGQQAFFNYSTS 90
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 33.3 bits (75), Expect = 0.007
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
N++ V LP + S +LK E G + A V D V F KE +
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTG-------VVEFVRKEDMTYAVR 53
Query: 69 T-DSHVLEGSRLSIQ 82
D+
Sbjct: 54 KLDNTKFRSHEGETA 68
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 33.6 bits (76), Expect = 0.007
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 11 IFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNK--EAVDKVFS 68
F G+L +L FS +G+I + G + F+ K EA+ K
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG------AKEGIILFKEKAKEALGKAKD 67
Query: 69 TDSHVLEGSRLSIQ--------PSDSHNRMAENMEDRFNQ 100
++ L+ + ++ ++ E+ ++ N+
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNK 107
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 33.0 bits (73), Expect = 0.018
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 287 ENGLNCLHWACDRGHLKVVQHLIEKCGADVN 317
E + L A RG ++ V+ L+E GA+ N
Sbjct: 1 EPSADWLATAAARGRVEEVRALLE-AGANPN 30
Score = 29.5 bits (64), Expect = 0.28
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 280 FNINQLDENGLNCLHWACDRGHLKVVQHLIE 310
++ D G + A + GH V ++L
Sbjct: 93 ARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.1 bits (72), Expect = 0.018
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKV-- 66
+ + LP V+ E+ +G++ N ++ KN F+ +EA +
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEEAAITMVN 62
Query: 67 -FSTDSHVLEGSRLSIQPSDS 86
+S + L + IQ S+
Sbjct: 63 YYSAVTPHLRNQPIYIQYSNH 83
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 29.8 bits (66), Expect = 0.092
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 9 NKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKEAVDKVFS 68
+F+ NLP + L F+++ ++ +++ FV F + +
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAAKE 63
Query: 69 T--DSHVLEGSRLSIQ 82
+ + I
Sbjct: 64 ALQGFKITPTHAMKIT 79
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.5 bits (65), Expect = 0.19
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 9/102 (8%)
Query: 2 SNSIRQLNKIFVGNLPWTVSHNELKKFFSEYGQIMNASVMFDKNTGLSKGFGFVTFQNKE 61
+S R I NLP E+++ FS +G + + V F
Sbjct: 4 GSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPL 57
Query: 62 AVDKVFST-DSHVLEGSRLSIQ--PSDSHNRMAENMEDRFNQ 100
K F L ++ P + + + Q
Sbjct: 58 EARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQ 99
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 28.3 bits (61), Expect = 0.54
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 293 LHWACDRGHLKVVQHLIEKC 312
WA G L V+ + K
Sbjct: 6 FMWALKNGDLDEVKDYVAKG 25
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Length = 81
Score = 26.7 bits (59), Expect = 1.2
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 55 VTFQNKEAVDKVFSTDSHVLE-------GSRLSIQPSDSHNRMAENMEDRFNQAC 102
V F+ K D FS + H+ + + MA+ + + AC
Sbjct: 9 VNFKMKGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC 63
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 26.0 bits (56), Expect = 8.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 11 IFVGNLPWTVSHN 23
IF G PWT+ H
Sbjct: 342 IFRGMEPWTLKHK 354
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.383
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,282,846
Number of extensions: 57933
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 170
Length of query: 347
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,226,816
Effective search space: 320198976
Effective search space used: 320198976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)