BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6300
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 59 NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
D+ L P LL+RAS +LP M ALA GA +W N D+ T L QA NS++AC
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
E+L+ NG +N D+ G+ PL+ AT LGHT CL LK AD DS G +PLT+A+E
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 178 ANADIVTL 185
ANADIVTL
Sbjct: 312 ANADIVTL 319
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 4 TDDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVS 62
++D+ L P LL+RAS +LP M ALA GA +W N D+ T L QA S
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA---NS 247
Query: 63 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI-GNSVMACEYLI 121
L+ E LL + V+ + R LH A I G++ +AC +L
Sbjct: 248 LLACEFLLQNGANVNQA------------------DSAGRGPLHHATILGHTGLACLFL- 288
Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
G + D++G+ PL +A E + V LL
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 59 NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
D+ L P LL+RAS +LP M ALA GA +W N D+ T L QA NS++AC
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
E+L+ NG +N D+ G+ PL+ AT LGHT CL LK AD DS G +PLT+A+E
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 178 ANADIVTL 185
ANADIVTL
Sbjct: 312 ANADIVTL 319
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 4 TDDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVS 62
++D+ L P LL+RAS +LP M ALA GA +W N D+ T L QA S
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA---NS 247
Query: 63 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI-GNSVMACEYLI 121
L+ E LL + V+ + R LH A I G++ +AC +L
Sbjct: 248 LLACEFLLQNGANVNQA------------------DSAGRGPLHHATILGHTGLACLFLK 289
Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
G + D++G+ PL +A E + V LL
Sbjct: 290 -RGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 59 NDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
D+ L P LL+RAS +LP M ALA GA +W N D+ T L QA NS++AC
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
E+L+ NG +N D+ G+ PL+ AT LGHT CL LK AD DS G +PLT+A+E
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 178 ANADIVTL 185
ANADIVTL
Sbjct: 312 ANADIVTL 319
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 4 TDDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVS 62
++D+ L P LL+RAS +LP M ALA GA +W N D+ T L QA N +
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT-AANSL- 248
Query: 63 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI-GNSVMACEYLI 121
L+ E LL + V+ + R LH A I G++ +AC +L
Sbjct: 249 -LACEFLLQNGANVNQA------------------DSAGRGPLHHATILGHTGLACLFLK 289
Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
G + D++G+ PL +A E + V LL
Sbjct: 290 -RGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D RT LH A + LI G +N D+ G+TPL+ A E GH V LL+ AD
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ DS G PL LA E N ++V L
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEVVKL 154
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D RT LH A + LI G +N D+ G+TPL+ A E GH V LL+ AD
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ DS G PL A E + ++V L
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKL 121
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
LI NG +N D+ G+TPL+ A E GH V LL+ AD + DS G PL A E +
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82
Query: 180 ADIVTL 185
++V L
Sbjct: 83 KEVVKL 88
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
D RT LH A + LI G +N D+ G+TPL LA E G+ V LL K
Sbjct: 102 DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 44/86 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D +T LH A + L+ G N D+ GKTPL+LA E GH V LLL AD
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ DS G PL LA E N ++V L
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKL 154
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D +T LH A + L+ G N D+ GKTPL+LA E GH V LLL AD
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ DS G PL LA E + ++V L
Sbjct: 96 PNAKDSDGKTPLHLAAENGHKEVVKL 121
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG +N D+ GKTPL+LA E GH V LLL AD + DS G PL LA E +
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 82
Query: 180 ADIVTL 185
++V L
Sbjct: 83 KEVVKL 88
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L Y A H V L L D + D RT LH A + L+ G N
Sbjct: 41 LHYAAENGHKEIVK---LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D+ G+TPL+ A E GH V LLL AD + DS G PL LA E N +IV L
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKL 154
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D RT LH A + L+ G N D+ G+TPL+ A E GH V LLL AD
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ DS G PL A E + +IV L
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKL 121
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG N D+ G+TPL+ A E GH V LLL AD + DS G PL A E +
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 82
Query: 180 ADIVTL 185
+IV L
Sbjct: 83 KEIVKL 88
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L Y A H V L L D + D RT LH A + L+ G N
Sbjct: 74 LHYAAENGHKEIVK---LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKH 156
D+ G+TPL LA E G+ V LL K
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 46/93 (49%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D + D RT LH A + LI G +N D+ G+TPL+ A + GH V L
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
L+ AD + DS G PL LA E N +IV L
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D RT LH A + LI G +N D+ G+TPL+ A + GH V LL+ AD
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ DS G PL A ++ + +IV L
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKL 121
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
LI NG +N D+ G+TPL+ A + GH V LL+ AD + DS G PL A ++ +
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 82
Query: 180 ADIVTL 185
+IV L
Sbjct: 83 KEIVKL 88
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D + D RT LH A + LI G +N D+ G+TPL LA E G+ V L
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 153 LLKH 156
L K
Sbjct: 155 LEKQ 158
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
RT LH A + E L+ NG +N D G TPL+LA LGH V +LLK+ AD +
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
D++G+ PL LA + +IV +
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEV 119
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ A+ V +L ++ L GA + + N T LH A + E L+ G +N
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNG--TTPLHLAASLGHLEIVEVLLKYGADVNA 96
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
DA G TPLYLA GH V +LLKH AD + D G ++++ N D+ +
Sbjct: 97 KDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG N D G+TPL++A +GH V +LL++ AD + VD++G PL LA +
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH 80
Query: 180 ADIVTL 185
+IV +
Sbjct: 81 LEIVEV 86
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ AS + +LP++ + L GAS + +N + T LH A +YL+ N K+N
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVE--TPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
+TPL+ A +GHT+ V LLL++ A+ ++ ++G PL +A + + + V
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A N V L+ G N QG TPL+LA + GH V LLL +A+ ++
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 163 VDSSGVEPLTLAVEKANADI 182
+ SG+ PL L ++ + +
Sbjct: 274 GNKSGLTPLHLVAQEGHVPV 293
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
AL L + N T LH V + LI +G+ ++ G TPL++A+
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G+ V LL+H+AD + G PL A ++ + DIVTL
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A ++ ++L+ + +N G +PL+ A + GHT V LLLK+ A +
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 163 VDSSGVEPLTLA 174
V S G PL +A
Sbjct: 373 VSSDGTTPLAIA 384
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A V E L+ N G TPL++A + V LLL H
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Query: 163 VDSSGVEPLTLAVEKANADI 182
+G PL +A ++ ++
Sbjct: 208 PAWNGYTPLHIAAKQNQVEV 227
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
LHQA L+ NG N + G TPL +A LG+ S
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA D +D +T LH A I + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGA--DVNAEDDSGKTPLHLAAIKGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +G +N D G TPL+LA GH V +LLK+ AD + D+ G PL LA + +
Sbjct: 67 LKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + + E L+ NG +N D G TPL+LA + GH V +LLK+ AD +
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA + T+ +D T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGADVNATD--NDGYTPLHLAASNGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ NG +N D G TPL+LA GH V +LLKH AD + D+ G PL LA + +
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ +G +N D G TPL+LA + GH V +LLKH AD +
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ A ++D+T T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGW-----TPLHLAAHFGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ NG +N D+ G TPL+LA GH V +LLK+ AD + DS G PL LA ++ +
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D+ G TPL+LA + GH V +LLK+ AD +
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 95 TNPNDDHR-TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
N +D H T LH A + E L+ NG +N D GKT ++ + G+ +L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 154 LK 155
K
Sbjct: 166 QK 167
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L L A D + + RT LH A + + L+ G +N D G+TPL+LA G
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
H V LLL+ AD + D +G PL LA + ++V L
Sbjct: 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
RT LH A + + L+ G +N D G+TPL+LA GH V LLL+ AD +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
D +G PL LA + ++V L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKL 86
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L L A D + + RT LH A + + L+ G +N D G+TPL+LA G
Sbjct: 53 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Query: 146 HTSQVCLLLK 155
H V LLL+
Sbjct: 113 HLEVVKLLLE 122
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G+TPL+LA GH V LLL+ AD + D +G PL LA + ++V L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D G TPL+LA GH V +LLK+ AD +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D +G+ PL LA + + +IV +
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEV 131
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D G TPL+LA GH V +LLK+ AD +
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G +++ N D+ +
Sbjct: 142 QDKFGKTAFDISINNGNEDLAEI 164
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N D G TPL+LA GH V +LLK+ AD + D+ G PL LA
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 177 KANADIVTL 185
+ +IV +
Sbjct: 90 FGHLEIVEV 98
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 45/98 (45%)
Query: 88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
L A D + D T LH A + E L+ G +N D G TPL+LA GH
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Query: 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V +LLK AD + D G P LA++ N DI +
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEV 152
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D + D T LH A + E L+ G +N D G TPL+LA GH V +
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LLK AD + D G PL LA + + +IV +
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG +N D G TPL+LA GH V +LLK AD + D G PL LA + +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 180 ADIVTL 185
+IV +
Sbjct: 81 LEIVEV 86
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D +D+ T LH A + E L+ NG +N D+ G TPL+LA GH V +
Sbjct: 31 DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEV 90
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LLKH AD + D +G PL LA +IV +
Sbjct: 91 LLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N D G TPL+LA G V +LLK+ AD + DS+G+ PL LA
Sbjct: 22 VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAY 81
Query: 177 KANADIVTL 185
+ +IV +
Sbjct: 82 DGHLEIVEV 90
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ +G +N D G TPL+LA G V +LLKH AD +
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D+ G+ +++ + D+ +
Sbjct: 134 QDALGLTAFDISINQGQEDLAEI 156
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N D QG TPL+LA +GH V +LLKH AD + D+ G PL LA +
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAAD 89
Query: 177 KANADIVTL 185
+ +IV +
Sbjct: 90 NGHLEIVEV 98
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQAVIGNSVMACEY 119
SDL +LL RA + ++ +A GA N +DD T LH A E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGAD---VNAHDDQGSTPLHLAAWIGHPEIVEV 65
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ +G +N D G TPL+LA + GH V +LLK+ AD + D+ G+ PL LA ++ +
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Query: 180 ADIVTL 185
+IV +
Sbjct: 126 LEIVEV 131
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D T LH A + E L+ G +N DA G TPL+LA + GH V +LLKH AD
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ D G ++++ N D+ +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG +N D G TPL+LA +GH V +LLK+ AD + +D SG PL LA ++ +
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGH 92
Query: 180 ADIVTL 185
+IV +
Sbjct: 93 LEIVEV 98
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA + + D T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGADVNAEDTYGD--TPLHLAARVGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ NG +N D G TPL+LA + GH V +LLK+ AD + D+ G PL LA + +
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ G +N D G TPL+LA + GH V +LLK+ AD +
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + + + E L+ NG +N DA G+TPL+L GH V +LLKH AD +
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEI 131
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N D G TPL+LA H V +LLK+ AD + +D+ G PL L
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 177 KANADIVTL 185
+ +IV +
Sbjct: 90 YGHLEIVEV 98
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 96 NPNDDHR--TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+P +HR T LH A I + + EYL+ NG N D G TPL+ A GH V LL
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 154 LKHKADQHIVDSSGVE---PLTLAVEKANADIVTL 185
L+HKA +V+++G + PL A + + DIV L
Sbjct: 63 LQHKA---LVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 57 GVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHR--TYLHQAVIGNS 113
G++ ++ E LL+ AS ++P + + L G ++PN DH T LH+A
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNG-----SDPNVKDHAGWTPLHEACNHGH 55
Query: 114 VMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPL 171
+ E L+ + +N Q +PL+ A + GH V LLL + A ++ V+ G+ P+
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%)
Query: 88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
L A D + D T LH A + E L+ G +N D G TPL+LA GH
Sbjct: 55 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Query: 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V +LLK AD + D G P LA+ + + DI +
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEV 152
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D + D T LH A + E L+ G +N D G TPL+LA GH V +
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LLK AD + D G PL LA + + +IV +
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 119
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG +N D G TPL+LA GH V +LLK AD + D G PL LA + +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 80
Query: 180 ADIVTL 185
+IV +
Sbjct: 81 LEIVEV 86
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D G TPL+LA +GH V +LLKH AD +
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D+ G TPL+LA + GH V +LLK+ AD +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D +G PL LA + +IV +
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEV 131
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N D G TPL+LA GH V +LLK+ AD + DS GV PL LA +
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD 89
Query: 177 KANADIVTL 185
+ + ++V +
Sbjct: 90 RGHLEVVEV 98
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
RT LH A + + L+ G +N D G+TPL+LA GH V LLL+ AD +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
D +G PL LA + ++V L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKL 86
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L L A D + + RT LH A + + L+ G +N D G+TPL+LA G
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 146 HTSQVCLLLK 155
H V LLL+
Sbjct: 80 HLEVVKLLLE 89
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G+TPL+LA GH V LLL+ AD + D +G PL LA + ++V L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N D G TPL+LA +LGH V +LLK+ AD + D+ G+ PL LA
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 177 KANADIVTL 185
+ + +IV +
Sbjct: 90 RGHLEIVEV 98
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA D ++D T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGA--DVNALDEDGLTPLHLAAQLGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ G +N D G TPL+LA GH V +LLKH AD + D G ++++ N
Sbjct: 67 LKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
D+ +
Sbjct: 127 DLAEI 131
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 54 AVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS 113
A + D S L+P L+ A+T +L ++ L GA D + T LH A +
Sbjct: 38 ADVNATDASGLTP---LHLAATYGHLEIVEVLLKHGA--DVNAIDIXGSTPLHLAALIGH 92
Query: 114 VMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL 173
+ E L+ +G +N D G TPL+LA +GH V +LLKH AD + D G +
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 174 AVEKANADIVTL 185
+++ N D+ +
Sbjct: 153 SIDNGNEDLAEI 164
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA + T+ + T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGADVNATDASG--LTPLHLAATYGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +G +N D G TPL+LA +GH V +LLKH AD + VD+ G PL LA +
Sbjct: 67 LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 85 ALALGASKDWTNPN--DDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
A+AL K +PN D T +H A + + L+ +G +N PD G P++LA
Sbjct: 49 AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
Query: 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ GHT+ V L ++D H D+ G+ PL LA+++ D+V +
Sbjct: 109 VQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDI 151
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA D + D T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGA--DVNAKDKDGYTPLHLAAREGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ G +N D G TPL+LA GH V +LLK AD + D G PL LA + +
Sbjct: 67 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%)
Query: 88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
L A D + D T LH A + E L+ G +N D G TPL+LA GH
Sbjct: 67 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V +LLK AD + D G ++++ N D+ +
Sbjct: 127 EIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 85 ALALGASKDWTNPN--DDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
A+AL K +PN D T +H A + + L+ +G +N PD G P++LA
Sbjct: 55 AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 114
Query: 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
+ GHT+ V L ++D H D+ G+ PL LA+++ D+V
Sbjct: 115 VQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLV 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA + T+ + T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGADVNATDASG--LTPLHLAATYGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +G +N D G TPL+LA +GH V +LLKH AD + VD+ G PL LA +
Sbjct: 67 LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 54 AVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS 113
A + D S L+P L+ A+T +L ++ L GA + + T LH A +
Sbjct: 38 ADVNATDASGLTP---LHLAATYGHLEIVEVLLKHGADVNAIDIMG--STPLHLAALIGH 92
Query: 114 VMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL 173
+ E L+ +G +N D G TPL+LA +GH V +LLKH AD + D G +
Sbjct: 93 LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 174 AVEKANADIVTL 185
+++ N D+ +
Sbjct: 153 SIDNGNEDLAEI 164
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D+ G TPL+LA + G+ V +LLKH AD +
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ +G ++ D G TPL+LA GH V +LLK+ AD +
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
+DS G+ PL LA + +IV +
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEV 131
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 35/66 (53%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG +N D G TPL+LA GH V +LLKH AD D G PL LA +
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH 92
Query: 180 ADIVTL 185
+IV +
Sbjct: 93 LEIVEV 98
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + + E L+ +G ++ D G TPL+LA GH V +LLK+ AD +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D +G PL LA ++ + +IV +
Sbjct: 109 FDMTGSTPLHLAADEGHLEIVEV 131
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
LI NG +N D G TPL+LA GH V +LLKH AD D G PL LA +
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 180 ADIVTL 185
+IV +
Sbjct: 93 LEIVEV 98
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + + E L+ G +N D G TPL+LA + GH V +LLK+ AD +
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADI 182
D G ++++ N D+
Sbjct: 142 QDKFGKTAFDISIDNGNEDL 161
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
L+ NG +N D G TPLYLAT GH V +LLK+ AD + VD+ G PL LA
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
E L+ NG +N DA G TPL+LA +GH +LLKH AD + D G +++
Sbjct: 63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 177 KANADIVTL 185
N D+ +
Sbjct: 123 NGNEDLAEI 131
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQAVIGNSVMACEY 119
SDL +LL RA + ++ +A GA N ND T LH A + + E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRIL---MANGAD---VNANDRKGNTPLHLAADYDHLEIVEV 65
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ +G +N D G TPL+LA GH V +LLKH AD + D G ++++ N
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 180 ADIVTL 185
D+ +
Sbjct: 126 EDLAEI 131
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG +N DA G TPL+LA GH V +LLK+ AD + VD +G+ PL LA
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 177 KANADIVTL 185
+ +IV +
Sbjct: 90 FGHLEIVEV 98
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
E L+ NG +N D +G TPL+LA GH V +LLK+ AD + D G ++++
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
Query: 177 KANADIVTL 185
N D+ +
Sbjct: 156 NGNEDLAEI 164
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ NG +N D G TPL LA GH V +LLK+ AD +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G PL LA + +IV +
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEV 131
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 95 TNPND-DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
N ND + T LH A + + E L+ NG +N D GKT ++ + G+ +L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 154 LK 155
K
Sbjct: 166 QK 167
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ A + DW T LH A + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLG-----HTPLHLAAKTGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ G +N D G TPL+LA + GH V +LLKH AD + D G PL LA +
Sbjct: 67 LKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 70 LYRASTVHNLPVMCHALALGASKD-WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L+ A+ +L ++ L GA + W N T LH A + E L+ +G +N
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYG---ATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D +G TPL+LA GH V +LLK+ AD + D G ++++ N D+ +
Sbjct: 108 AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
+CH L + A + ++D RT L +A N + A +YLI G ++ DA+G T L+LA
Sbjct: 26 ICHML-VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA 84
Query: 142 TELGHTSQVCLLLKH-KADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ GH V LL + + D + D G P+ A E + D+V L
Sbjct: 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 96 NPND-DHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLL 153
+P D + T LH A +YL+ NG + +NC D G TP+ ATE H V LL
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 154 LKHKADQHIVDSS 166
L +D +I D+
Sbjct: 131 LSKGSDINIRDNE 143
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
R+ LH A V C L+ G I+ +TPL A E H V L+K A
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 162 IVDSSGVEPLTLAVEKANADIV 183
D+ G L LA +K + ++V
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVV 93
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + E L+ G +N D QG TPL+LA E GH V +LLK+ AD +
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ A + DW T LH V + E L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGI-----TPLHLVVNNGHLEIIEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +N D G TPL+LA GH V +LLK+ AD + +D G PL LA E +
Sbjct: 67 LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHL 126
Query: 181 DIVTL 185
+IV +
Sbjct: 127 EIVEV 131
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 74 STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ 133
+T + + C L + A D P+ ++ T LH A I N + +Y I G ++
Sbjct: 16 ATQYGIYERCREL-VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 134 -GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
TPL+ AT GH S V L+K+ AD ++D G + LA + + IV
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA D +D T LH A + E L
Sbjct: 12 SDLGKKLLEATRAGQDDEVRIL---MANGA--DVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +G +N D+ G+TPL+LA +GH V +LL++ AD + D G ++++ N
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
D+ +
Sbjct: 127 DLAEI 131
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA D +D T LH A + E L
Sbjct: 12 SDLGKKLLEATRAGQDDEVRIL---MANGA--DVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +G +N D G+TPL+LA +GH V +LL++ AD + D G ++++ N
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
D+ +
Sbjct: 127 DLAEI 131
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 62 SDLSPELL-LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120
SDL +LL RA + ++ +A GA D +D T LH A + E L
Sbjct: 12 SDLGKKLLEATRAGQDDEVRIL---MANGA--DVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
Query: 121 ILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
+ +G +N D G+TPL+LA +GH V +LL++ AD + D G ++++ N
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 181 DIVTL 185
D+ +
Sbjct: 127 DLAEI 131
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + + E L+ NG +N G+TPL+LA H V +LLKH AD +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D G ++++ N D+ +
Sbjct: 109 QDKFGKTAFDISIDNGNEDLAEI 131
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L NG +N D G TPL+LA LGH V +LLK+ AD + ++G PL LA
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 177 KANADIVTL 185
+ +IV +
Sbjct: 90 ADHLEIVEV 98
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 64 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN 123
L+P +LL A+ L V+ A+ D + PN++ T LH A+ G + ++LI
Sbjct: 19 LNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITA 76
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA 158
G +N PD+ G TPL+ A T L++H A
Sbjct: 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L GA ++ N D T LHQA I ++V ++L+ NG IN PD +G PL+ A G
Sbjct: 60 LERGADINYANV--DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTL 173
+ L+ A V+S G PL +
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N +T L + G+ +A E L+ G N DA G +P++ A G + +L++H
Sbjct: 41 NRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 99
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + +DS+G P+ LA+ + ++ +V+
Sbjct: 100 ADVNALDSTGSLPIHLAIREGHSSVVSF 127
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 85 ALALGASKDWTNPN--DDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
A+AL K +PN D T +H A + + L+ +G +N D+ G P++LA
Sbjct: 57 AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
Query: 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
GH+S V L ++D H D+SG+ PL LA ++ +++ +
Sbjct: 117 IREGHSSVVSFLAP-ESDLHHRDASGLTPLELARQRGAQNLMDI 159
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N +T L + G+ +A E L+ G N DA G +P++ A G + +L++H
Sbjct: 39 NRFGKTALQVMMFGSPAVALE-LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + +DS+G P+ LA+ + ++ +V+
Sbjct: 98 ADVNALDSTGSLPIHLAIREGHSSVVSF 125
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 85 ALALGASKDWTNPN--DDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
A+AL K +PN D T +H A + + L+ +G +N D+ G P++LA
Sbjct: 55 AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
Query: 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
GH+S V L ++D H D+SG+ PL LA ++ +++ +
Sbjct: 115 IREGHSSVVSFLAP-ESDLHHRDASGLTPLELARQRGAQNLMDI 157
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 96 NPNDDHR-TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
N DDH + LH A E LI+ G +IN + TPL+LA GH V LL
Sbjct: 28 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
Query: 155 KHKADQHIVDSSGVEPLTLA 174
++KAD + V+ G PL A
Sbjct: 88 QYKADINAVNEHGNVPLHYA 107
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 107 QAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS 166
Q GN+V +L +N D G +PL+ A G ++ V +L+ A ++++
Sbjct: 7 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 66
Query: 167 GVEPLTLAVEKANADIV 183
PL LA + DIV
Sbjct: 67 DDTPLHLAASHGHRDIV 83
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG +N D G TPL+LA GH V +LLK AD + D G ++++ N
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 180 ADIVTL 185
D+ +
Sbjct: 81 EDLAEI 86
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 96 NPNDDHR-TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
N DDH + LH A E LI+ G +IN + TPL+LA GH V LL
Sbjct: 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
Query: 155 KHKADQHIVDSSGVEPLTLA 174
++KAD + V+ G PL A
Sbjct: 93 QYKADINAVNEHGNVPLHYA 112
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 107 QAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS 166
Q GN+V +L +N D G +PL+ A G ++ V +L+ A ++++
Sbjct: 12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71
Query: 167 GVEPLTLAVEKANADIV 183
PL LA + DIV
Sbjct: 72 DDTPLHLAASHGHRDIV 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D T LH A + L+ G +N G TPL+LA + GH V LLL AD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ G P LA + + +IV L
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKL 93
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D T LH A + L+ G +N G TP +LA + GH V LL AD
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T L AV N + E L+ G +N D GKTPL + G++ LL+H A+ +
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129
Query: 163 VDSSGVEPLTLAVEKANADIV 183
+ G PL +A + ++IV
Sbjct: 130 RNLEGETPLIVASKYGRSEIV 150
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95 TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
T + D RT LH A E+L+ G+ +N D G +PL++A G V LL
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + V+ +G PL A K +I +
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 125
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 84 HALALGASKDWTNPN-DDH--RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYL 140
H +A+ + NP+ DH T +H+A ++ L+ N D +G TPL+L
Sbjct: 120 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Query: 141 ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
A + + LL+ A +I + PL +A
Sbjct: 180 ACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG + D G TPL+LA GH V LLL+ AD + D G ++++
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 177 KANADIVTL 185
N D+ +
Sbjct: 82 NGNEDLAEI 90
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95 TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
T + D RT LH A E+L+ G+ +N D G +PL++A G V LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + V+ +G PL A K +I +
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 124
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 84 HALALGASKDWTNPN-DDH--RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYL 140
H +A+ + NP+ DH T +H+A ++ L+ N D +G TPL+L
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Query: 141 ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
A + + LL+ A +I + PL +A
Sbjct: 179 ACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A N V EYL+ +G ++ D G PL+ A GH LL+KH A ++
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D PL A K +I L
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKL 126
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 127 INCPDAQGK--TPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
+NC D +G+ TPL+ A S V LL+H AD H D G+ PL A + ++
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 185 L 185
L
Sbjct: 93 L 93
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
LH A E L+ +G +N D TPL+ A G LLL+H AD +
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 165 SSGVEPLTLAVEKANADIVTL 185
G PL L V+ + DI L
Sbjct: 139 RDGNTPLDL-VKDGDTDIQDL 158
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A N V EYL+ +G ++ D G PL+ A GH LL+KH A ++
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D PL A K +I L
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKL 128
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 127 INCPDAQGK--TPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
+NC D +G+ TPL+ A S V LL+H AD H D G+ PL A + ++
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 185 L 185
L
Sbjct: 95 L 95
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
LH A E L+ +G +N D TPL+ A G LLL+H AD +
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 165 SSGVEPLTLAVEKANADIVTL 185
G PL L V+ + DI L
Sbjct: 141 RDGNTPLDL-VKDGDTDIQDL 160
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A N V EYL+ +G ++ D G PL+ A GH LL+KH A ++
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
D PL A K +I L
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKL 130
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 127 INCPDAQGK--TPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
+NC D +G+ TPL+ A S V LL+H AD H D G+ PL A + ++
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 185 L 185
L
Sbjct: 97 L 97
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
LH A E L+ +G +N D TPL+ A G LLL+H AD +
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 165 SSGVEPLTLAVEKANADIVTL 185
G PL L V+ + DI L
Sbjct: 143 RDGNTPLDL-VKDGDTDIQDL 162
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176
L+ NG + D G TPL+LA GH V LLL+ AD D G ++++
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 177 KANADIVTL 185
N D+ +
Sbjct: 100 NGNEDLAEI 108
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95 TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
T + D RT LH A E+L+ G+ +N D G +PL++A G V LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + V+ +G PL A K +I +
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 58 VNDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMA 116
VN V+ L Y AS H + VM L GA+ D + D T +H+A ++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYD--ATAMHRAAAKGNLKM 154
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
L+ N D +G TPL+LA + + L+ A +I + PL +A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+N PD +G TPL A+ G V LL+ AD HI+ L+LA DIV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
P++ T L A + +L+ G + + ++ L LA+ G+T V LLL+
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE 90
Query: 156 HKADQHIVDSSGVEPLTLAV 175
D +I D +G PL AV
Sbjct: 91 RDVDINIYDWNGGTPLLYAV 110
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 29/76 (38%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
+ + L A G L+ + IN D G TPL A H V LL AD
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Query: 160 QHIVDSSGVEPLTLAV 175
SG P+ LAV
Sbjct: 128 LTTEADSGYTPMDLAV 143
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+N PD +G TPL A+ G V LL+ AD HI+ L+LA DIV L
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 29/76 (38%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
+ + L A G L+ + IN D G TPL A H V LL AD
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Query: 160 QHIVDSSGVEPLTLAV 175
SG P+ LAV
Sbjct: 128 LTTEADSGYTPMDLAV 143
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH 146
T L AV GN V E L+ G + G TP+ LA LG+
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
R LH A + E+L+L G IN PD TPL A GH S V LLL AD+
Sbjct: 36 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 95
Query: 162 IVDSSGVEPL 171
+ G+ L
Sbjct: 96 VKGPDGLTAL 105
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L G S+D D RT LH A E L+ +G +N D T L+ ATE
Sbjct: 54 LRAGVSRDARTKVD--RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
H V LL+K+ AD H ++++ N D+ +
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
LH A E L+ G+ + +TPL++A GH + V +LLKH AD + D
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 165 SSGVEPLTLAVEKANADIVTL 185
+ L A E + ++V L
Sbjct: 98 MLKMTALHWATEHNHQEVVEL 118
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG D G +PL+LA + GH S +LL+ + PL +A + +
Sbjct: 21 LMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 180 ADIVTL 185
A+IV +
Sbjct: 80 ANIVEV 85
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
R LH A + E+L+L G IN PD TPL A GH S V LLL AD+
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100
Query: 162 IVDSSGV 168
+ G+
Sbjct: 101 VKGPDGL 107
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 95 TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
T + D RT LH A E+L+ G+ +N D G +PL++A G V LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + V+ +G PL A K +I +
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 58 VNDVSDLSPELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMA 116
VN V+ L Y AS H + VM L GA+ D + D T +H+A ++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVML--LEGGANPDAKDHYD--ATAMHRAAAKGNLKM 154
Query: 117 CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
L+ N D +G TPL+LA + + L+ A +I + PL +A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 90 ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ 149
A D ++ +T LH A N+ A L+++ + D + +TPL+LA G
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEA 199
Query: 150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LL + A++ I D P +A E+ + DIV L
Sbjct: 200 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRL 235
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
PND+ T LH AV ++L+ G+ +N D+ G TPL+ A + QVC L
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV-QVCKFL 122
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
PND+ T LH AV ++L+ G+ +N D+ G TPL+ A + QVC L
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV-QVCKFL 122
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG + + + +TPL+LA G +LL H A++ I D P +A E+ +
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
Query: 180 ADIVTL 185
DIV L
Sbjct: 127 HDIVRL 132
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 47 HRTYLHQAVI-----GVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
+RT LH +I G + + ++L+ N P+ G ++ + PND +
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS-----GTNEKESKPNDKN 255
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
+++ N + +++I N L N D+ G T L +A LG+ S V LL + AD
Sbjct: 256 GER-KDSILEN--LDLKWIIANML--NAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 162 IVDSSGVEPLTLA 174
I + SG+ P+
Sbjct: 311 IANKSGLRPVDFG 323
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 125 LKINCP-DAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L +N P D G TPL+ T + + V L+KH +++ D+ G L AV+ N
Sbjct: 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 121 ILNGLKINC--PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178
+L L +NC D + TPL+LA V LLL+H AD H D G+ PL A
Sbjct: 43 LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG 102
Query: 179 NADIVTL 185
+ ++ L
Sbjct: 103 HYEVTEL 109
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 23/140 (16%)
Query: 39 DWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN 98
++ P H T LH AV ++ ELLL + + V N
Sbjct: 204 NFKQPQS-HETALHCAVASLHPKRKQVAELLLRKGANV------------------NEKN 244
Query: 99 DDHRTYLHQAV--IGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
D T LH A N VM E L +G K+N D+ G+T L+ A GH LLL +
Sbjct: 245 KDFMTPLHVAAERAHNDVM--EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Query: 157 KADQHIVDSSGVEPLTLAVE 176
+D I+ G + E
Sbjct: 303 GSDPSIISLQGFTAAQMGNE 322
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A N V + L+ +G ++ D G PL+ A GH LLLKH A +
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
+D PL A K ++ +L
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSL 142
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
LH A E L+ +G +N D TPL+ A LLL H AD +V+
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 165 SSGVEPLTLA 174
G + +A
Sbjct: 155 CHGKSAVDMA 164
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG + + + +TPL+LA G +LL H A++ I D P +A E+ +
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 180 ADIVTL 185
DIV L
Sbjct: 204 HDIVRL 209
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA---D 159
T LH A + A + L+ N D G+TPL+ A +L++++A D
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 160 QHIVDSSGVEPLTLAVEKA 178
+ D G PL LA A
Sbjct: 87 ARMHD--GTTPLILAARLA 103
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG + + + +TPL+LA G +LL H A++ I D P +A E+ +
Sbjct: 141 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 200
Query: 180 ADIVTL 185
DIV L
Sbjct: 201 HDIVRL 206
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG + + + +TPL+LA G +LL H A++ I D P +A E+ +
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 236
Query: 180 ADIVTL 185
DIV L
Sbjct: 237 HDIVRL 242
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA---D 159
T LH A + A + L+ N D G+TPL+ A +L++++A D
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 160 QHIVDSSGVEPLTLAVEKA 178
+ D G PL LA A
Sbjct: 120 ARMHD--GTTPLILAARLA 136
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG + + + +TPL+LA G +LL H A++ I D P +A E+ +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 180 ADIVTL 185
DIV L
Sbjct: 236 HDIVRL 241
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA---D 159
T LH A + A + L+ N D G+TPL+ A +L++++A D
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 160 QHIVDSSGVEPLTLAVEKA 178
+ D G PL LA A
Sbjct: 119 ARMHD--GTTPLILAARLA 135
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 92 KDWT----NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGH 146
+DW N D T LH AVI L G +N P+ G+TPL+LA E
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
S + LLLK AD G PL A+ + N + L
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 92 KDWT----NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGH 146
+DW N D T LH AVI L G +N P+ G+TPL+LA E
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204
Query: 147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
S + LLLK AD G PL A+ + N + L
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ NG + + + +TPL+LA G +LL H A++ I D P +A E+ +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 180 ADIVTL 185
DIV L
Sbjct: 236 HDIVRL 241
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA---D 159
T LH A + A + L+ N D G+TPL+ A +L++++A D
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 160 QHIVDSSGVEPLTLAVEKA 178
+ D G PL LA A
Sbjct: 119 ARMHD--GTTPLILAARLA 135
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 114 VMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI----VDSSGV 168
V A +L+L+ G +N +GKTPL LA E H V LL+ +HI DS G
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGK 274
Query: 169 EPLTLAVE 176
L LAVE
Sbjct: 275 TALLLAVE 282
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGK-TPLYLATELGHTSQVCLLLKHKADQHIV 163
L +AV V + L+ G +N + +G TPL+ A ++ V LLL+H AD +
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 164 DSSGVEPLTLA 174
+G P LA
Sbjct: 89 KKNGATPFILA 99
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVC----LLLKHKADQHIVDSSGVEPLTLAVEKAN 179
G +N D G+ L A S V LLL H AD ++ G PL LAVEK +
Sbjct: 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251
Query: 180 ADIV 183
+V
Sbjct: 252 LGLV 255
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 114 VMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI----VDSSGV 168
V A +L+L+ G +N +GKTPL LA E H V LL+ +HI DS G
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGK 254
Query: 169 EPLTLAVE 176
L LAVE
Sbjct: 255 TALLLAVE 262
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 99 DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK-TPLYLATELGHTSQVCLLLKHK 157
D+H L +AV V + L+ G +N + +G TPL+ A ++ V LLL+H
Sbjct: 5 DNH--LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 158 ADQHIVDSSGVEPLTLA 174
AD + +G P LA
Sbjct: 63 ADPVLRKKNGATPFLLA 79
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVC----LLLKHKADQHIVDSSGVEPLTLAVEKAN 179
G +N D G+ L A S V LLL H AD ++ G PL LAVEK +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 180 ADIV 183
+V
Sbjct: 232 LGLV 235
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 96 NPNDDHRT---YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
NP+ RT +H A + + L+ N +N D +G PL+LA + GH V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 153 LLKHKA 158
L+KH A
Sbjct: 122 LVKHTA 127
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 71 YRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP 130
Y A +N+ ++C L GA K+ ++ LHQA + L+ +GL +
Sbjct: 36 YYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91
Query: 131 DAQGKTPLYLATELGHTSQVCLLLK 155
D +G T LY A + G+ V L +K
Sbjct: 92 DDKGNTALYYAVDSGNXQTVKLFVK 116
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA 158
DH + LH+A +G + + L+ +G ++N A TPL+ A G V LLL+H A
Sbjct: 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
+H+A I ++ LI G +N A +PL+ A GH S V +LLKH A + V
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 165 SSGVEPLTLAVEKANADIVTL 185
+ PL A + D V L
Sbjct: 123 ADWHTPLFNACVSGSWDCVNL 143
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 78/201 (38%), Gaps = 35/201 (17%)
Query: 5 DDVSDLSPELLLYRASTVHNLPVMCHALALG--ASKDWTNP--NDDHRTYLHQAVIGVND 60
D VSD SP +H + H L+L S+ W DH + LH+A +G
Sbjct: 55 DAVSDWSP---------MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG--- 102
Query: 61 VSDLS-PELLLYRASTVHNLPVMCHALALGA--SKDW------------TNPNDDHRTYL 105
LS ++LL + V+ + H A S W P D + +
Sbjct: 103 -GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 161
Query: 106 HQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDS 165
H+A V LI G I+ + TPLYLA E + V LL+ AD +
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD--VNQG 219
Query: 166 SGVE-PLTLAVEKANADIVTL 185
G + PL V A+ ++ L
Sbjct: 220 KGQDSPLHAVVRTASEELACL 240
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
+H+A I ++ LI G +N A +PL+ A GH S V +LLKH A + V
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 165 SSGVEPLTLAVEKANADIVTL 185
+ PL A + D V L
Sbjct: 67 ADWHTPLFNACVSGSWDCVNL 87
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
DH + LH+A +G + + L+ +G ++N A TPL+ A G V LLL+H A
Sbjct: 35 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 160 QHIVDSSGVEPLTLAVEKANADIV 183
+S P+ A + + + V
Sbjct: 95 VQ-PESDLASPIHEAARRGHVECV 117
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 105 LHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLL-KHKADQHI 162
LH+A S+ E L L +N D QG TPL+ A GH LL+ K+ A+ +
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 163 VDSSGVEPLTLAV 175
VD+ G + +A+
Sbjct: 204 VDNKGAKAEDVAL 216
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
Query: 56 IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVM 115
+ ++D D S + A +V NL V+ D + T LH AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 116 ACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLA 174
++LI NG + D + PL+ A +G + LL K+ + D G PL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 175 VEKANADIVTL 185
+ + + D L
Sbjct: 182 LAEGHGDAAVL 192
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 105 LHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLL-KHKADQHI 162
LH+A S+ E L L +N D QG TPL+ A GH LL+ K+ A+ +
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 163 VDSSGVEPLTLAV 175
VD+ G + +A+
Sbjct: 204 VDNKGAKAEDVAL 216
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
Query: 56 IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVM 115
+ ++D D S + A +V NL V+ D + T LH AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 116 ACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLA 174
++LI NG + D + PL+ A +G + LL K+ + D G PL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 175 VEKANADIVTL 185
+ + + D L
Sbjct: 182 LAEGHGDAAVL 192
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 105 LHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLL-KHKADQHI 162
LH+A S+ E L L +N D QG TPL+ A GH LL+ K+ A+ +
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 163 VDSSGVEPLTLAV 175
VD+ G + +A+
Sbjct: 204 VDNKGAKAEDVAL 216
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
Query: 56 IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVM 115
+ ++D D S + A +V NL V+ D + T LH AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 116 ACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLA 174
++LI NG + D + PL+ A +G + LL K+ + D G PL A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 175 VEKANADIVTL 185
+ + + D L
Sbjct: 182 LAEGHGDAAVL 192
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
+GL +N G +PL++A G + LLLKH A+ ++ PL LA ++ + +
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 183 V 183
V
Sbjct: 135 V 135
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N D LH A + L+ + K N D G TPL A GH V LLL+H
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + ++ G L AV + + +V L
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVEL 203
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV 150
S+D ++P LH A + L+ +G +A PL+LA + GH V
Sbjct: 83 SQDGSSP-------LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 151 CLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LL A + D SG PL A + ++V L
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL 170
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 59 NDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACE 118
D+S +P L+Y S H+ V AL L N+ T LH+AVI V E
Sbjct: 148 KDLSGNTP--LIYACSGGHHELV---ALLLQHGASINASNNKGNTALHEAVIEKHVFVVE 202
Query: 119 YLILNGLKINCPDAQGKTPLYLATE 143
L+L+G + + + +T + A +
Sbjct: 203 LLLLHGASVQVLNKRQRTAVDCAEQ 227
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 107 QAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATELGHTSQVCLLLKHKADQHIVDS 165
Q ++ S E L+L+G + NC D T P++ A G + +L + A + D+
Sbjct: 50 QVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
Query: 166 SGVEPLTLAVEKANADIV 183
G P+ LA E+ + DI
Sbjct: 110 WGRLPVDLAEEQGHRDIA 127
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ +T LH AVI N E L+ G D +G TPL+LA E G + V +L +
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 158 ADQHI 162
H+
Sbjct: 99 TTPHL 103
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATELGHTSQVCLLLKH 156
N + T LH A I + E L+ G +N + G+T L+LA +L + V LLLK
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 157 KADQHIVDSSGVEPLTLAVEKANADI 182
AD + V G P L + + I
Sbjct: 171 GADVNRVTYQGYSPYQLTWGRPSTRI 196
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ +T LH AVI N E L+ G D +G TPL+LA E G + V +L +
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 158 ADQHI 162
H+
Sbjct: 102 TTPHL 106
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATELGHTSQVCLLLKH 156
N + T LH A I + E L+ G +N + G+T L+LA +L + V LLLK
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 157 KADQHIVDSSGVEPLTLAVEKANADI 182
AD + V G P L + + I
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRI 199
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 96 NPNDDHRT---YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
NP+ RT +H A + + L+ +N D +G PL+LA + GH V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 153 LLKHKA 158
L+KH A
Sbjct: 122 LVKHTA 127
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 96 NPNDDHRT---YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
NP+ RT +H A + + L+ +N D +G PL+LA + GH V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 153 LLKHKA 158
L+KH A
Sbjct: 122 LVKHTA 127
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 102 RTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
RT LH A ++ +YL+ G + D GKTP+ LA + G V L++ A
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Query: 161 HIVDSS 166
VD++
Sbjct: 340 EAVDAT 345
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 77 HNLPVMCHAL---ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ 133
H P AL A + D N D T LH AV + L+ G I+ D +
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 134 -GKTPLYLATELGHTSQVCLLLKHKADQ-----------HIVDSSGVEPLTLAVEKANAD 181
G++PL A E S V LLL+H A+ H G+ PL + ++ AD
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ +T LH AVI L+ G D G+T +LA E H S CL
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE--HRSPTCL----- 95
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVT 184
+ ++DS+ P TL +E N D +T
Sbjct: 96 --RALLDSAA--PGTLDLEARNYDGLT 118
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATELGHTSQVCLLLK 155
PN R + ++G++ +A E L+L+G + NC D T P++ A G + +L +
Sbjct: 41 PNSYGRRPIQVMMMGSARVA-ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 99
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIV 183
A + D+ G P+ LA E + D+
Sbjct: 100 AGARLDVRDAWGRLPVDLAEELGHRDVA 127
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATELGHTSQVCLLLK 155
PN R + ++G++ +A E L+L+G + NC D T P++ A G + +L +
Sbjct: 41 PNSYGRRPIQVMMMGSARVA-ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 99
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIV 183
A + D+ G P+ LA E + D+
Sbjct: 100 AGARLDVRDAWGRLPVDLAEELGHRDVA 127
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 96 NPNDDHRT---YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
NP+ RT +H A + + L+ +N D +G PL+LA + GH V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 153 LLKHKA 158
L+KH A
Sbjct: 122 LVKHTA 127
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 96 NPNDDHRT---YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
NP+ RT +H A + + L+ +N D +G PL+LA + GH V
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 153 LLKHKA 158
L+KH A
Sbjct: 122 LVKHTA 127
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
G+ +N D G TPL A H V +LL+ AD I SG + LAV
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 75 TVHNLPVMCHALALGASKDWTN----PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP 130
+VH L L L + N +++ T L A + E+L+ NG
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 131 DAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
++ L LA G+T V +LL D + D +G PL AV
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 108
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
G+ +N D G TPL A H V +LL+ AD I SG + LAV
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 65 SPELLLYRAS---TVHNLPVMCHALALGASKDWTN----PNDDHRTYLHQAVIGNSVMAC 117
S E L ++ + +VH L L L + N +++ T L A +
Sbjct: 9 SRENLYFQGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVV 68
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
E+L+ NG ++ L LA G+T V +LL D + D +G PL AV
Sbjct: 69 EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 126
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
G+ +N D G TPL A H V +LL+ AD I SG + LAV
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 75 TVHNLPVMCHALALGASKDWTN----PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP 130
+VH L L L + N +++ T L A + E+L+ NG
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 131 DAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
++ L LA G+T V +LL D + D +G PL AV
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 110
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 21/107 (19%)
Query: 80 PVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPL 138
P+M ALA DD T L +GN IN +Q G+T L
Sbjct: 148 PIMLTALA------TLKTQDDIETVLQLFRLGN--------------INAKASQAGQTAL 187
Query: 139 YLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LA G V LL +AD ++ D G L A E + +I L
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 112 NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEP 170
+++ACE +N D G T L A E GH LLL D + D G
Sbjct: 200 KALLACEA------DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253
Query: 171 LTLAVEKANADIVTL 185
L +A++ ++I ++
Sbjct: 254 LMVALDAGQSEIASM 268
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 96 NPNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
N ++ T LH AV S+ ++L+ N ++ +G T L+ + + L
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223
Query: 153 LLKHKADQHIVDSSGVEPLTLA 174
LL+ KA I + SG PL +A
Sbjct: 224 LLRGKASIEIANESGETPLDIA 245
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA-DQH 161
T L+ AV N + + LI G IN ++ +P A G T + +LKH D +
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
+ G L A EK + D V L
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKL 124
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
+++I NG ++ A G T L+ A + LLLK +A V+ +G L +A +K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
+++I NG ++ A G T L+ A + LLLK +A V+ +G L +A +K
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,687,167
Number of Sequences: 62578
Number of extensions: 234231
Number of successful extensions: 775
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 290
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)