Query psy6300
Match_columns 185
No_of_seqs 117 out of 2376
Neff 11.2
Searched_HMMs 29240
Date Fri Aug 16 22:55:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 2.7E-38 9.4E-43 208.7 17.8 149 14-185 6-154 (169)
2 4b93_B Ankyrin repeat domain-c 100.0 5.6E-38 1.9E-42 221.7 13.7 155 2-179 76-230 (269)
3 2rfm_A Putative ankyrin repeat 100.0 2.2E-36 7.7E-41 203.7 16.2 157 5-184 28-184 (192)
4 1yyh_A HN1;, notch 1, ankyrin 100.0 4.7E-36 1.6E-40 210.2 18.1 181 2-184 46-240 (253)
5 2f8y_A Notch homolog 1, transl 100.0 2.6E-35 9.1E-40 202.5 20.6 181 2-184 14-208 (223)
6 3v31_A Ankyrin repeat family A 100.0 2.7E-35 9.1E-40 194.2 16.7 151 11-184 2-152 (167)
7 3hra_A Ankyrin repeat family p 100.0 4.7E-35 1.6E-39 198.3 18.3 159 3-184 30-195 (201)
8 2y1l_E Darpin-8.4; hydrolase-i 100.0 4E-35 1.4E-39 193.8 17.4 155 7-184 9-163 (169)
9 4gpm_A Engineered protein OR26 100.0 5.9E-35 2E-39 192.7 17.4 138 2-162 27-164 (169)
10 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-35 8.4E-40 204.8 16.3 182 2-185 36-234 (241)
11 2rfa_A Transient receptor pote 100.0 5.2E-35 1.8E-39 202.3 17.0 167 2-184 27-214 (232)
12 1awc_B Protein (GA binding pro 100.0 7.9E-35 2.7E-39 189.4 16.1 150 12-185 2-151 (153)
13 3aji_A 26S proteasome non-ATPa 100.0 5.5E-35 1.9E-39 201.9 16.2 177 5-184 33-222 (231)
14 1oy3_D Transcription factor in 100.0 4.2E-35 1.4E-39 207.9 15.5 170 5-178 38-269 (282)
15 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-34 4.4E-39 203.8 17.5 172 2-178 26-210 (261)
16 3b7b_A Euchromatic histone-lys 100.0 4.5E-34 1.5E-38 198.1 20.0 178 4-184 3-194 (237)
17 3b7b_A Euchromatic histone-lys 100.0 2E-34 7E-39 199.8 17.5 179 2-182 34-225 (237)
18 1ikn_D Protein (I-kappa-B-alph 100.0 2E-35 6.7E-40 205.0 12.0 162 2-184 35-201 (236)
19 3aji_A 26S proteasome non-ATPa 100.0 4.4E-34 1.5E-38 197.4 17.8 174 8-184 2-189 (231)
20 4hbd_A KN motif and ankyrin re 100.0 1.2E-34 4.1E-39 205.5 15.2 157 5-184 104-267 (276)
21 2fo1_E LIN-12 protein; beta-ba 100.0 3.8E-34 1.3E-38 210.8 18.3 182 2-185 156-364 (373)
22 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.2E-34 7.5E-39 188.8 14.4 150 11-184 4-154 (162)
23 3ljn_A Hypothetical protein; a 100.0 2.8E-34 9.4E-39 210.8 16.5 177 2-184 43-261 (364)
24 2etb_A Transient receptor pote 100.0 3.5E-35 1.2E-39 206.0 11.1 171 2-184 29-238 (256)
25 3v30_A DNA-binding protein rfx 100.0 3.8E-34 1.3E-38 189.5 15.4 150 12-184 2-152 (172)
26 1yyh_A HN1;, notch 1, ankyrin 100.0 2E-34 6.8E-39 201.9 13.8 179 3-184 1-207 (253)
27 3d9h_A CDNA FLJ77766, highly s 100.0 1E-33 3.5E-38 201.6 16.9 174 6-184 53-239 (285)
28 2dzn_A Probable 26S proteasome 100.0 2.1E-33 7.1E-38 193.6 17.2 156 7-183 31-190 (228)
29 4b93_B Ankyrin repeat domain-c 100.0 5E-34 1.7E-38 201.5 14.0 175 7-184 6-202 (269)
30 3twr_A Tankyrase-2; ankyrin re 100.0 2.8E-34 9.6E-39 189.0 11.9 154 7-184 3-157 (165)
31 1wdy_A 2-5A-dependent ribonucl 100.0 8.3E-33 2.8E-37 196.1 20.3 181 2-184 62-270 (285)
32 3utm_A Tankyrase-1; tankyrase, 100.0 8.6E-33 2.9E-37 201.3 20.2 182 2-184 48-297 (351)
33 1oy3_D Transcription factor in 100.0 9.8E-34 3.4E-38 200.8 14.8 179 5-184 2-242 (282)
34 1k1a_A B-cell lymphoma 3-encod 100.0 8.8E-33 3E-37 191.9 19.0 176 6-184 3-200 (241)
35 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.6E-33 1.2E-37 182.0 15.9 148 12-184 2-150 (156)
36 2rfa_A Transient receptor pote 100.0 2.3E-33 7.8E-38 194.0 15.7 152 11-183 2-170 (232)
37 1n11_A Ankyrin; clathrin, BAND 100.0 3.5E-33 1.2E-37 209.4 17.6 180 2-184 202-394 (437)
38 3d9h_A CDNA FLJ77766, highly s 100.0 5.8E-33 2E-37 197.7 17.8 120 62-184 88-207 (285)
39 1n11_A Ankyrin; clathrin, BAND 100.0 7.4E-33 2.5E-37 207.6 18.7 180 2-184 4-196 (437)
40 2xai_A ASB-9, ankyrin repeat a 100.0 5.8E-33 2E-37 195.4 16.9 169 11-184 2-183 (261)
41 3f6q_A Integrin-linked protein 100.0 2.1E-33 7.1E-38 187.2 12.9 153 9-184 2-155 (179)
42 4g8k_A 2-5A-dependent ribonucl 100.0 2.4E-32 8.1E-37 198.6 19.1 181 2-184 48-290 (337)
43 1sw6_A Regulatory protein SWI6 100.0 4.5E-34 1.5E-38 207.0 9.6 154 2-178 120-327 (327)
44 1s70_B 130 kDa myosin-binding 100.0 9.6E-33 3.3E-37 197.4 16.4 154 2-176 63-274 (299)
45 3jxi_A Vanilloid receptor-rela 100.0 1.6E-33 5.3E-38 198.0 11.6 170 3-184 33-242 (260)
46 3kea_A K1L; tropism, ANK repea 100.0 2.9E-33 9.8E-38 199.3 12.7 175 4-184 23-212 (285)
47 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-31 3.9E-36 190.2 20.7 182 2-184 28-236 (285)
48 2pnn_A Transient receptor pote 100.0 3.2E-33 1.1E-37 197.8 12.5 166 7-184 49-250 (273)
49 1s70_B 130 kDa myosin-binding 100.0 2.4E-32 8.1E-37 195.4 16.4 153 9-184 37-249 (299)
50 1bi7_B P16INK4A, MTS1, multipl 100.0 5E-33 1.7E-37 181.5 11.8 150 1-174 1-151 (156)
51 2dzn_A Probable 26S proteasome 100.0 7.7E-33 2.6E-37 190.8 13.0 150 8-180 68-221 (228)
52 3eu9_A Huntingtin-interacting 100.0 1.1E-31 3.6E-36 186.1 17.8 180 2-184 32-227 (240)
53 3kea_A K1L; tropism, ANK repea 100.0 2.8E-33 9.5E-38 199.3 9.6 170 2-184 54-238 (285)
54 3ljn_A Hypothetical protein; a 100.0 7.5E-33 2.6E-37 203.2 11.9 180 3-184 11-228 (364)
55 1d9s_A Cyclin-dependent kinase 100.0 3E-32 1E-36 173.9 12.8 134 2-159 2-136 (136)
56 3utm_A Tankyrase-1; tankyrase, 100.0 4.4E-31 1.5E-35 192.3 20.4 173 2-176 81-322 (351)
57 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.1E-32 3.7E-37 191.7 10.8 152 9-184 2-156 (239)
58 1ikn_D Protein (I-kappa-B-alph 100.0 3.5E-33 1.2E-37 193.6 7.3 156 6-184 2-168 (236)
59 2etb_A Transient receptor pote 100.0 6E-32 2E-36 189.5 12.9 150 11-181 1-188 (256)
60 3hra_A Ankyrin repeat family p 100.0 6.2E-31 2.1E-35 178.0 16.6 152 10-184 3-162 (201)
61 3eu9_A Huntingtin-interacting 100.0 1E-30 3.4E-35 181.1 18.0 178 5-184 2-194 (240)
62 2vge_A RELA-associated inhibit 100.0 5E-33 1.7E-37 192.1 5.8 155 7-184 16-205 (229)
63 3v30_A DNA-binding protein rfx 100.0 2.6E-31 9.1E-36 175.8 13.9 143 5-170 29-171 (172)
64 2pnn_A Transient receptor pote 100.0 1.7E-31 5.7E-36 189.0 12.4 161 2-179 3-196 (273)
65 2fo1_E LIN-12 protein; beta-ba 100.0 2.8E-31 9.6E-36 195.5 12.5 179 3-184 115-330 (373)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.4E-30 8.2E-35 169.6 15.5 134 2-159 28-162 (162)
67 2y1l_E Darpin-8.4; hydrolase-i 100.0 9.7E-30 3.3E-34 167.9 17.4 133 2-157 37-169 (169)
68 3f6q_A Integrin-linked protein 100.0 6.8E-30 2.3E-34 170.1 14.8 142 2-166 29-170 (179)
69 1n0r_A 4ANK, 4 ankyrin repeats 100.0 2.8E-29 9.6E-34 157.7 15.8 126 11-159 1-126 (126)
70 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-29 3.9E-34 184.5 16.0 151 7-185 163-319 (337)
71 3t8k_A Uncharacterized protein 100.0 4.1E-31 1.4E-35 176.9 7.4 149 12-184 6-171 (186)
72 2jab_A H10-2-G3; HER2, darpin, 100.0 2.2E-29 7.6E-34 160.5 14.9 127 8-157 10-136 (136)
73 3jxi_A Vanilloid receptor-rela 100.0 6E-30 2.1E-34 179.7 12.8 154 9-179 2-188 (260)
74 3v31_A Ankyrin repeat family A 100.0 2.8E-29 9.6E-34 165.3 15.0 136 2-160 26-161 (167)
75 2rfm_A Putative ankyrin repeat 100.0 3.4E-29 1.2E-33 168.5 15.1 133 2-157 58-190 (192)
76 1d9s_A Cyclin-dependent kinase 100.0 1.6E-29 5.4E-34 161.2 11.5 117 65-184 11-128 (136)
77 2f8y_A Notch homolog 1, transl 100.0 6.9E-28 2.4E-32 165.5 19.9 157 2-161 48-218 (223)
78 1awc_B Protein (GA binding pro 100.0 2.1E-28 7.1E-33 159.0 16.2 128 2-153 25-152 (153)
79 3twr_A Tankyrase-2; ankyrin re 100.0 9.1E-29 3.1E-33 162.5 14.1 132 3-158 33-164 (165)
80 1ycs_B 53BP2, P53BP2; ankyrin 100.0 4.4E-30 1.5E-34 178.5 6.8 154 2-179 28-193 (239)
81 3c5r_A BARD-1, BRCA1-associate 100.0 1.3E-29 4.6E-34 161.7 8.5 132 2-157 1-132 (137)
82 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.6E-28 1.2E-32 158.2 15.4 130 2-156 26-155 (156)
83 2jab_A H10-2-G3; HER2, darpin, 100.0 2.1E-28 7.3E-33 156.0 13.2 118 65-184 13-130 (136)
84 3c5r_A BARD-1, BRCA1-associate 100.0 6.4E-29 2.2E-33 158.6 9.3 119 64-184 8-126 (137)
85 1sw6_A Regulatory protein SWI6 100.0 1.9E-29 6.4E-34 182.8 5.8 176 2-184 42-300 (327)
86 4hbd_A KN motif and ankyrin re 100.0 5.1E-29 1.8E-33 176.6 7.8 150 12-184 76-233 (276)
87 3aaa_C Myotrophin, protein V-1 100.0 5.7E-28 1.9E-32 151.4 11.1 117 65-183 6-122 (123)
88 2b0o_E UPLC1; arfgap, structur 100.0 8.4E-28 2.9E-32 172.1 12.7 146 12-180 151-299 (301)
89 1n0r_A 4ANK, 4 ankyrin repeats 100.0 2E-27 6.8E-32 149.2 12.8 118 65-184 1-118 (126)
90 2vge_A RELA-associated inhibit 100.0 3.6E-28 1.2E-32 167.8 10.1 137 28-184 1-140 (229)
91 1bi7_B P16INK4A, MTS1, multipl 99.9 8.4E-28 2.9E-32 156.6 9.2 117 65-184 11-128 (156)
92 3ehr_A Osteoclast-stimulating 99.9 6.1E-28 2.1E-32 165.9 8.8 136 9-167 70-206 (222)
93 3ui2_A Signal recognition part 99.9 2.5E-27 8.7E-32 165.0 11.2 134 10-184 43-177 (244)
94 3deo_A Signal recognition part 99.9 2.8E-27 9.4E-32 158.1 10.7 135 9-184 41-176 (183)
95 3aaa_C Myotrophin, protein V-1 99.9 6.5E-26 2.2E-30 142.0 14.3 112 9-143 4-115 (123)
96 1dcq_A PYK2-associated protein 99.9 6.6E-26 2.3E-30 160.6 15.9 177 8-184 62-255 (278)
97 3t8k_A Uncharacterized protein 99.9 6.1E-28 2.1E-32 161.5 5.2 136 5-163 30-183 (186)
98 3lvq_E ARF-GAP with SH3 domain 99.9 6.1E-26 2.1E-30 172.7 16.1 147 12-175 132-281 (497)
99 3jue_A Arfgap with coiled-coil 99.9 4.3E-26 1.5E-30 166.9 13.9 152 6-178 193-348 (368)
100 3deo_A Signal recognition part 99.9 6.2E-26 2.1E-30 151.5 12.6 116 65-183 43-159 (183)
101 3ehr_A Osteoclast-stimulating 99.9 2.3E-26 7.7E-31 158.0 9.3 118 65-184 72-190 (222)
102 2aja_A Ankyrin repeat family p 99.9 1.4E-28 4.7E-33 180.7 -3.1 148 9-184 89-242 (376)
103 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-24 5.2E-29 155.2 17.1 176 8-184 87-276 (301)
104 3ui2_A Signal recognition part 99.9 8.1E-25 2.8E-29 152.4 13.3 114 65-181 44-158 (244)
105 1dcq_A PYK2-associated protein 99.9 4.7E-24 1.6E-28 151.1 15.6 132 12-160 130-264 (278)
106 3jue_A Arfgap with coiled-coil 99.9 1.8E-24 6.2E-29 158.3 13.3 120 65-184 198-318 (368)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.6E-24 1.6E-28 127.1 12.2 93 65-159 1-93 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.9 3.5E-23 1.2E-27 157.5 16.0 120 65-184 131-257 (497)
109 2l6b_A NR1C; ankyrin, consensu 99.9 2.5E-24 8.6E-29 133.1 7.5 106 64-171 7-112 (115)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.5E-23 1.6E-27 122.8 11.9 93 11-126 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.9 1.1E-23 3.8E-28 130.2 7.9 109 7-138 4-112 (115)
112 2aja_A Ankyrin repeat family p 99.9 2E-24 6.8E-29 158.6 1.2 144 13-185 66-217 (376)
113 2zgd_A 3 repeat synthetic anky 99.9 9E-22 3.1E-26 120.7 8.4 87 98-184 21-107 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 6.2E-20 2.1E-24 112.5 11.8 87 65-153 23-109 (110)
115 1gp8_A Protein (scaffolding pr 77.4 2.6 8.8E-05 19.6 2.4 19 15-33 16-34 (40)
116 3mkq_B Coatomer subunit alpha; 30.9 1.1E+02 0.0037 19.8 6.4 45 103-155 94-139 (177)
117 3zrh_A Ubiquitin thioesterase 27.5 2E+02 0.0067 21.6 7.5 61 20-87 30-90 (454)
118 4g26_A Pentatricopeptide repea 25.5 2.2E+02 0.0076 21.6 6.8 48 69-120 146-197 (501)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.7e-38 Score=208.67 Aligned_cols=149 Identities=30% Similarity=0.350 Sum_probs=143.5
Q ss_pred hHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCC
Q psy6300 14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD 93 (185)
Q Consensus 14 ~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~ 93 (185)
++|+.||+.|+.+++++|++.|++++.++. .|.|||++|+..++.++++++++.|.+++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~---------------------~g~t~l~~a~~~~~~~~~~~ll~~gad~~ 64 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDS---------------------DGRTPLHHAAENGHKEVVKLLISKGADVN 64 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---------------------CCCCHHHHHHHcCCHHHHHHHHhcccchh
Confidence 579999999999999999999999998887 99999999999999999999999999998
Q ss_pred CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy6300 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL 173 (185)
Q Consensus 94 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~ 173 (185)
.+ +..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..++.+++++|++.|++++.++..|.|||++
T Consensus 65 ~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~ 142 (169)
T 4gpm_A 65 AK--DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142 (169)
T ss_dssp CC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hh--ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence 76 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccC
Q psy6300 174 AVEKANADIVTL 185 (185)
Q Consensus 174 A~~~~~~~~~~~ 185 (185)
|+..|+.+++++
T Consensus 143 A~~~g~~~iv~~ 154 (169)
T 4gpm_A 143 AREHGNEEVVKL 154 (169)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999999998863
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=221.72 Aligned_cols=155 Identities=21% Similarity=0.132 Sum_probs=149.0
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++.+|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|+++|+..++.++
T Consensus 76 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~---------------------~g~t~l~~a~~~~~~~~ 134 (269)
T 4b93_B 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA---------------------DQAVPLHLACQQGHFQV 134 (269)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC---------------------CCCCccccccccChHHH
Confidence 789999999999999999999999999999999999988776 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 161 (185)
+++|++.|.+++.. |..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++|++|+++|+|++
T Consensus 135 ~~~Ll~~g~~~n~~--d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 135 VKCLLDSNAKPNKK--DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212 (269)
T ss_dssp HHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999999876 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHhCC
Q psy6300 162 IVDSSGVEPLTLAVEKAN 179 (185)
Q Consensus 162 ~~~~~~~t~l~~A~~~~~ 179 (185)
.+|..|+|||++|+.+++
T Consensus 213 ~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 213 VLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CCCTTSCCSGGGSCTTCH
T ss_pred CcCCCCCCHHHHHHhCCc
Confidence 999999999999987765
No 3
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=2.2e-36 Score=203.65 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=150.0
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH 84 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 84 (185)
.+.+|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.+++++
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~ 86 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI---------------------EGSTALIWAVKNNRLGIAEK 86 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc---------------------cCccHHHHHHHcCCHHHHHH
Confidence 467899999999999999999999999999999887766 89999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC
Q psy6300 85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164 (185)
Q Consensus 85 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~ 164 (185)
|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++
T Consensus 87 Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 164 (192)
T 2rfm_A 87 LLSKGSNVNTK--DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164 (192)
T ss_dssp HHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred HHHCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 99999998875 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHhCCccccc
Q psy6300 165 SSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 165 ~~~~t~l~~A~~~~~~~~~~ 184 (185)
..|.||+++|+..|+.++++
T Consensus 165 ~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 165 LTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp TTSCBHHHHHHHTTCHHHHH
T ss_pred CCCCCHHHHHHHhCcHHHHH
Confidence 99999999999999999876
No 4
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.7e-36 Score=210.23 Aligned_cols=181 Identities=22% Similarity=0.170 Sum_probs=155.6
Q ss_pred CCCCC-CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300 2 VATDD-VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE 67 (185)
Q Consensus 2 ~~~~~-~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 67 (185)
|++++ ..|..|.||||+|+..|+.+++++|++.|++++..+....++ +++...+.......+..|.
T Consensus 46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 125 (253)
T 1yyh_A 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125 (253)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence 34443 358899999999999999999999999999998887665554 1122222212234455899
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300 68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147 (185)
Q Consensus 68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 147 (185)
+|||+|+..|+.+++++|++.|.+++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~ 203 (253)
T 1yyh_A 126 TPLILAARLAVEGMLEDLINSHADVNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203 (253)
T ss_dssp CHHHHHHHHTCSSHHHHHHHTTCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999876 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+++++|+++|++++.++..|.||+++|+..|+.++++
T Consensus 204 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~ 240 (253)
T 1yyh_A 204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240 (253)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999876
No 5
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.6e-35 Score=202.55 Aligned_cols=181 Identities=22% Similarity=0.167 Sum_probs=157.8
Q ss_pred CCCCCCC-CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300 2 VATDDVS-DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE 67 (185)
Q Consensus 2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 67 (185)
|++++.. |..|.||||+|+..|+.+++++|++.|++++..+....++ +++...........+..+.
T Consensus 14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 93 (223)
T 2f8y_A 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 93 (223)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCC
T ss_pred CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC
Confidence 5666654 8899999999999999999999999999998877655544 1122222212234455889
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300 68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147 (185)
Q Consensus 68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 147 (185)
+|||+|+..++.+++++|++.+.+++.. +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.
T Consensus 94 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 171 (223)
T 2f8y_A 94 TPLILAARLAVEGMLEDLINSHADVNAV--DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHhCcHHHHHHHHHcCCCCcCc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH
Confidence 9999999999999999999999998876 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 148 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+++++|+++|++++.++..|.||+++|+..++.++++
T Consensus 172 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 208 (223)
T 2f8y_A 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 208 (223)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHH
Confidence 9999999999999999999999999999999998876
No 6
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.7e-35 Score=194.21 Aligned_cols=151 Identities=21% Similarity=0.195 Sum_probs=144.5
Q ss_pred CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300 11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA 90 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 90 (185)
.|.||||.|+..|+.+++++|++.|.+++..+. .|.+|||+|+..|+.+++++|++.+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE---------------------EGFTPLMWAAAHGQIAVVEFLLQNGA 60 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC---------------------CCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 578999999999999999999999998888776 89999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy6300 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP 170 (185)
Q Consensus 91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 170 (185)
+++.. +..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||
T Consensus 61 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 138 (167)
T 3v31_A 61 DPQLL--GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138 (167)
T ss_dssp CTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 99876 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccc
Q psy6300 171 LTLAVEKANADIVT 184 (185)
Q Consensus 171 l~~A~~~~~~~~~~ 184 (185)
+++|+..|+.++++
T Consensus 139 l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 139 MDLAVALGYRSVQQ 152 (167)
T ss_dssp HHHHHHHTCHHHHH
T ss_pred HHHHHHcCcHHHHH
Confidence 99999999998875
No 7
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.7e-35 Score=198.30 Aligned_cols=159 Identities=21% Similarity=0.175 Sum_probs=148.8
Q ss_pred CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300 3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM 82 (185)
Q Consensus 3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 82 (185)
.+++..|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.+++
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~l~~A~~~~~~~~~ 88 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS---------------------ISDSPYLYAGAQGRTEIL 88 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHH
Confidence 47888999999999999999999999999999999988776 899999999999999999
Q ss_pred HHHH-HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCC-----HHHHHHHHh
Q psy6300 83 CHAL-ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGH-----TSQVCLLLK 155 (185)
Q Consensus 83 ~~ll-~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~-----~~~v~~Ll~ 155 (185)
++|+ ..+.+++.. +..|.||||.|+..|+.+++++|++.| ++++..+..|.||||+|+..+. .+++++|++
T Consensus 89 ~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~ 166 (201)
T 3hra_A 89 AYMLKHATPDLNKH--NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166 (201)
T ss_dssp HHHHHHSCCCTTCC--CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred HHHHhccCcccccc--cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence 9999 556577664 788999999999999999999999999 9999999999999999999988 899999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 156 HKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 156 ~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.|++++.++..|.|||++|+..|+.++++
T Consensus 167 ~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 167 NGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 99999999999999999999999999876
No 8
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=4e-35 Score=193.84 Aligned_cols=155 Identities=25% Similarity=0.241 Sum_probs=144.8
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL 86 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 86 (185)
.....+.++|++|++.|+.+++++|++.|++++.++. .|.+|||+|+..|+.+++++|+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll 67 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA---------------------SGWTPLHLAAFNGHLEIVEVLL 67 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHH
Confidence 3455678999999999999999999999999988776 8999999999999999999999
Q ss_pred HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC
Q psy6300 87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS 166 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 166 (185)
+.+.+++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..
T Consensus 68 ~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 145 (169)
T 2y1l_E 68 KNGADVNAV--DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145 (169)
T ss_dssp HTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred HcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence 999998875 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhCCccccc
Q psy6300 167 GVEPLTLAVEKANADIVT 184 (185)
Q Consensus 167 ~~t~l~~A~~~~~~~~~~ 184 (185)
|.||+++|+..|+.++++
T Consensus 146 g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 146 GKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp SCCHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHhCCHHHHH
Confidence 999999999999998876
No 9
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=5.9e-35 Score=192.72 Aligned_cols=138 Identities=26% Similarity=0.231 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++.+|..|.|||++|+..++.+++++|++.|++++.++. .|.||||+|+..|+.++
T Consensus 27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~---------------------~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS---------------------DGRTPLHHAAENGHKEV 85 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc---------------------CCCCHHHHHHHcCCHHH
Confidence 799999999999999999999999999999999999988877 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 161 (185)
+++|+++|++++.+ |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++
T Consensus 86 v~~Ll~~gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 86 VKLLISKGADVNAK--DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHHCcCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999986 8899999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q psy6300 162 I 162 (185)
Q Consensus 162 ~ 162 (185)
-
T Consensus 164 ~ 164 (169)
T 4gpm_A 164 H 164 (169)
T ss_dssp -
T ss_pred C
Confidence 4
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.5e-35 Score=204.77 Aligned_cols=182 Identities=20% Similarity=0.127 Sum_probs=152.6
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhcc---CCcccCCC
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIG---VNDVSDLS 65 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~ 65 (185)
+++++..|..|.||||+|+..|+.+++++|++.|++++..+....++ +.+...... .....+..
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 115 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence 56888999999999999999999999999999999988776654444 112222210 11333447
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 66 PELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 66 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
|.+|||+|+..|+.+++++|++.+.+++.. + ..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus 116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 193 (241)
T 1k1a_A 116 GLTALHVAVNTECQETVQLLLERGADIDAV--DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193 (241)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccc--cccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 889999999999999999999999888875 4 6789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185 (185)
Q Consensus 145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~ 185 (185)
++.+++++|+++|++++.++..|.||+++|+..|+.++++.
T Consensus 194 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~ 234 (241)
T 1k1a_A 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234 (241)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred CCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence 99999999999999999999999999999999998888763
No 11
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.2e-35 Score=202.27 Aligned_cols=167 Identities=19% Similarity=0.092 Sum_probs=141.7
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++.+|..|.||||+|+..|+.+++++|++.|+++..... ...+..|.+|||+|+..|+.++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------------~~~~~~g~t~L~~A~~~~~~~~ 90 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM----------------TSELYEGQTALHIAVINQNVNL 90 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC----------------CSTTTTTCCHHHHHHHTTCHHH
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc----------------cccCCCCcCHHHHHHHcCCHHH
Confidence 567777777788888888888888888888877766522111 1122288999999999999999
Q ss_pred HHHHHHcCCCCCCCCC-----------CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHH
Q psy6300 82 MCHALALGASKDWTNP-----------NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV 150 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~-----------~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v 150 (185)
+++|+++|.+++.... +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++
T Consensus 91 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~ 170 (232)
T 2rfa_A 91 VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170 (232)
T ss_dssp HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence 9999999999887521 22699999999999999999999999999999999999999999999999988
Q ss_pred ----HHHHhCCCCC------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300 151 ----CLLLKHKADQ------HIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 151 ----~~Ll~~g~~~------~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++|++.|++. +.++..|.|||++|+..|+.++++
T Consensus 171 ~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999987 588999999999999999999876
No 12
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=7.9e-35 Score=189.42 Aligned_cols=150 Identities=25% Similarity=0.199 Sum_probs=140.8
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~ 91 (185)
..++|+.|+..|+.+++++|++.|.+++ .+. .|.+|||+|+..|+.+++++|++.+.+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 59 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDW---------------------LGTSPLHLAAQYGHFSTTEVLLRAGVS 59 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT---------------------TCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4689999999999999999999998765 233 788999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy6300 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPL 171 (185)
Q Consensus 92 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 171 (185)
++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||+
T Consensus 60 ~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 137 (153)
T 1awc_B 60 RDAR--TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137 (153)
T ss_dssp TTCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCC--CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 8875 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccccC
Q psy6300 172 TLAVEKANADIVTL 185 (185)
Q Consensus 172 ~~A~~~~~~~~~~~ 185 (185)
++|+..|+.+++++
T Consensus 138 ~~A~~~~~~~i~~~ 151 (153)
T 1awc_B 138 DISIDNGNEDLAEI 151 (153)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999998763
No 13
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.5e-35 Score=201.95 Aligned_cols=177 Identities=19% Similarity=0.152 Sum_probs=142.4
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHH
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLY 71 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~ 71 (185)
.+..+..|.||||+|+..|+.+++++|++.|++++.++....++ +++...+.+.+ ..+..|.+|||
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~ 111 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLH 111 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence 45678889999999999999999999999988887776654443 12222222222 23347888999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Q psy6300 72 RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC 151 (185)
Q Consensus 72 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~ 151 (185)
+|+..++.+++++|++.+.+++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.++++
T Consensus 112 ~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 189 (231)
T 3aji_A 112 YAASKNRHEIAVMLLEGGANPDAK--DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK 189 (231)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence 999989999999999888888765 778889999999999999999999999998888888999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 152 ~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+|+++|++++.++..|.||+++|+..++.++++
T Consensus 190 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 222 (231)
T 3aji_A 190 FLVTQGASIYIENKEEKTPLQVAKGGLGLILKR 222 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence 999999999888889999999988877776654
No 14
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.2e-35 Score=207.88 Aligned_cols=170 Identities=19% Similarity=0.080 Sum_probs=105.2
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccC--------------------------
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGV-------------------------- 58 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 58 (185)
++.++..|.||||+|+..|+.+++++|+++|++++..+....++ ++......
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp--L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA--LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH--HHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH--HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence 56677777888888888888888888888777777665543333 22111100
Q ss_pred -----------------------------------CcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCCC
Q psy6300 59 -----------------------------------NDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHR 102 (185)
Q Consensus 59 -----------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~ 102 (185)
....+..|.+|||+|+..|+.+++++|+++|.+++.. + ..|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~ 193 (282)
T 1oy3_D 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGR 193 (282)
T ss_dssp ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC--CTTTCC
T ss_pred ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCc
Confidence 0122336667777777777777777777777777654 3 2377
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178 (185)
Q Consensus 103 ~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 178 (185)
||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.|||++|....
T Consensus 194 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777776554
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=203.79 Aligned_cols=172 Identities=17% Similarity=0.140 Sum_probs=134.5
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 68 (185)
|++++..|..|.||||+|+..|+.+++++|++.|++++..+....++ +.+...+.+.+ ....|.+
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t 103 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLAS 103 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCC
Confidence 67889999999999999999999999999999999988877655444 11222222222 2335778
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 148 (185)
|||+|+..|+.+++++|++.|.+++.. +..|.||||.|+..|+.+++++|++.|++++. +..|.||||+|+..++.+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~ 180 (261)
T 2xai_A 104 PIHEAARRGHVECVNSLIAYGGNIDHK--ISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEE 180 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHH
Confidence 888888888888888888888877765 67788888888888888888888888888874 777888888888888888
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178 (185)
Q Consensus 149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 178 (185)
++++|++.|++++.++..|.||+++|+..+
T Consensus 181 ~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 181 LACLLMDFGADTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCGGGGSCTTC
T ss_pred HHHHHHHcCCCCCCcCCCCCChhhhccccc
Confidence 888888888888888888888888887544
No 16
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.5e-34 Score=198.07 Aligned_cols=178 Identities=22% Similarity=0.180 Sum_probs=99.6
Q ss_pred CCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHH
Q psy6300 4 TDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLL 70 (185)
Q Consensus 4 ~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l 70 (185)
+.+.+|..|.||||.|+..|+.+++++|++.|++++..+....++ +++...+... ...+..|.+||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L 81 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCL 81 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHH
Confidence 455666666666666666666666666666666665554433332 1111111111 12223555666
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy6300 71 YRASTVHNLPVMCHALALG-ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ 149 (185)
Q Consensus 71 ~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~ 149 (185)
|+|+..|+.+++++|++.+ .+++.. +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQ--DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 6666666666666666555 344432 4555566666666666666666666666666555566666666666666666
Q ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 150 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+++|++.|++++.++..|.||||+|+..++.++++
T Consensus 160 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (237)
T 3b7b_A 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVV 194 (237)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHH
Confidence 66666666666666666666666666666555543
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2e-34 Score=199.82 Aligned_cols=179 Identities=18% Similarity=0.174 Sum_probs=156.6
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 68 (185)
|++++..+..|.||||.|+..|+.+++++|++.|++++..+....++ +++...+.......+..|.+
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 113 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCC
Confidence 68899999999999999999999999999999999988876655444 11122211112334458999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 148 (185)
|||+|+..++.+++++|++.|.+++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+
T Consensus 114 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 191 (237)
T 3b7b_A 114 PMIWATEYKHVDLVKLLLSKGSDINIR--DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCcc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh
Confidence 999999999999999999999999875 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccc
Q psy6300 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182 (185)
Q Consensus 149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~ 182 (185)
++++|+++|++++.++..|.||+++|+..++.+.
T Consensus 192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887643
No 18
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2e-35 Score=204.97 Aligned_cols=162 Identities=22% Similarity=0.199 Sum_probs=148.8
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
+++++..+..|.||||+|+..|+.+++++|++.|++++.++. .|.+|||+|+..|+.++
T Consensus 35 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 93 (236)
T 1ikn_D 35 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF---------------------RGNTPLHLACEQGCLAS 93 (236)
T ss_dssp CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHH
Confidence 357889999999999999999999999999999999888776 89999999999999999
Q ss_pred HHHHHHcCCCCCC----CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300 82 MCHALALGASKDW----TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA-QGKTPLYLATELGHTSQVCLLLKH 156 (185)
Q Consensus 82 ~~~ll~~~~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~ 156 (185)
+++|++.+.++.. ...+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..++.+++++|+++
T Consensus 94 v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 173 (236)
T 1ikn_D 94 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173 (236)
T ss_dssp HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999875321 22367899999999999999999999999999999997 999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 157 KADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 157 g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
|++++.++..|.|||++|+..|+.++++
T Consensus 174 ga~~~~~~~~g~tpl~~A~~~~~~~~~~ 201 (236)
T 1ikn_D 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQ 201 (236)
T ss_dssp TCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred CCCCCcccCCCCCHHHHHHccCchHHHH
Confidence 9999999999999999999999998875
No 19
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.4e-34 Score=197.40 Aligned_cols=174 Identities=22% Similarity=0.203 Sum_probs=146.4
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHHcCCC-CCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHHHH
Q psy6300 8 SDLSPELLLYRASTVHNLPVMCHALALGAS-KDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLYRA 73 (185)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~a 73 (185)
.+..+.+||+.|+..|+.+.++++++.+.. .+..+....++ +++...+.+.+. .+..|.+|||+|
T Consensus 2 e~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A 80 (231)
T 3aji_A 2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA 80 (231)
T ss_dssp -CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHH
T ss_pred CCccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHH
Confidence 355688999999999999999999987754 33344433333 222333333333 344889999999
Q ss_pred HhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300 74 STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153 (185)
Q Consensus 74 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 153 (185)
+..|+.+++++|++++.+++.. +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999999988875 78899999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 154 l~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++.|++++.++..|.|||++|+..++.++++
T Consensus 159 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 189 (231)
T 3aji_A 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAK 189 (231)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999988875
No 20
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=205.49 Aligned_cols=157 Identities=23% Similarity=0.280 Sum_probs=147.8
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCC-CCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH-----hcCC
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS-----TVHN 78 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-----~~~~ 78 (185)
++..|..|.||||+|+..|+.+++++|++.|+ +++..+. .|.+|||+|+ ..++
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~---------------------~g~tpL~~a~~~~~~~~~~ 162 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR---------------------AGYSPIMLTALATLKTQDD 162 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT---------------------TSCCHHHHGGGCCCCSHHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC---------------------CCCCHHHHHHHHHhhhhhh
Confidence 68899999999999999999999999999998 8887776 8999999999 6688
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh-CC
Q psy6300 79 LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK-HK 157 (185)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g 157 (185)
.++++.+++.|.+.+.. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++ .|
T Consensus 163 ~~~v~~Ll~~g~~~~~~--~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g 240 (276)
T 4hbd_A 163 IETVLQLFRLGNINAKA--SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS 240 (276)
T ss_dssp HHHHHHHHHHSCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred HHHHHHHHHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence 89999999999777764 7789999999999999999999999999999999999999999999999999999999 89
Q ss_pred CCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 158 ADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 158 ~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++++.++..|.|||++|+..|+.++++
T Consensus 241 ad~~~~d~~g~TpL~~A~~~g~~~iv~ 267 (276)
T 4hbd_A 241 CDISLTDRDGSTALMVALDAGQSEIAS 267 (276)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCCcCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999999999876
No 21
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-34 Score=210.83 Aligned_cols=182 Identities=22% Similarity=0.218 Sum_probs=158.7
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc-----------------CCcccCC
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG-----------------VNDVSDL 64 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 64 (185)
|++++..|..|.||||+|+..|+.+++++|++.|++++..+....++ ++..... .....+.
T Consensus 156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~--L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA--LHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH--HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH--HHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 78999999999999999999999999999999999998877655444 2222211 1123345
Q ss_pred CchhHHHHHHhcC---CHHHHHHHHHcCCCCCCC------CCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCC
Q psy6300 65 SPELLLYRASTVH---NLPVMCHALALGASKDWT------NPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQG 134 (185)
Q Consensus 65 ~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~ 134 (185)
.|.+|||+|+..+ +.+++++|++.|.+++.. ..+..|.||||.|+..|+.+++++|++.+ ++++..|..|
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g 313 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 313 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence 8999999999988 899999999999998752 13568999999999999999999999876 9999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccccC
Q psy6300 135 KTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185 (185)
Q Consensus 135 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~~ 185 (185)
.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++
T Consensus 314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~ 364 (373)
T 2fo1_E 314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999998863
No 22
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.2e-34 Score=188.84 Aligned_cols=150 Identities=21% Similarity=0.168 Sum_probs=141.8
Q ss_pred CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300 11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA 90 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 90 (185)
...+||+.|+..|+.+++++|++.|++++..+. .|.+|||+|+. |+.+++++|++.+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------------~g~t~L~~A~~-~~~~~v~~Ll~~g~ 61 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNG---------------------FGRTALQVMKL-GNPEIARRLLLRGA 61 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT---------------------TSCCHHHHCCS-SCHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc---------------------cCccHHHHHHc-CcHHHHHHHHHcCC
Confidence 467999999999999999999999999888776 89999999999 99999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCc
Q psy6300 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD-QHIVDSSGVE 169 (185)
Q Consensus 91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~t 169 (185)
+++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++ ++.++..|.|
T Consensus 62 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 139 (162)
T 1ihb_A 62 NPDLK--DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139 (162)
T ss_dssp CTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred CCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence 99875 78999999999999999999999999999999999999999999999999999999999988 5899999999
Q ss_pred HHHHHHHhCCccccc
Q psy6300 170 PLTLAVEKANADIVT 184 (185)
Q Consensus 170 ~l~~A~~~~~~~~~~ 184 (185)
||++|+..|+.++++
T Consensus 140 ~l~~A~~~~~~~~~~ 154 (162)
T 1ihb_A 140 ACDLARLYGRNEVVS 154 (162)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHH
Confidence 999999999999876
No 23
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.8e-34 Score=210.81 Aligned_cols=177 Identities=16% Similarity=0.106 Sum_probs=152.5
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCC-------------------c--
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN-------------------D-- 60 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-- 60 (185)
|++++..|..|.||||+|+..|+.+++++|++.|++++.. ...+.++....... .
T Consensus 43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 118 (364)
T 3ljn_A 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLL 118 (364)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB----TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHH
Confidence 6788888989999999999999999999999988865542 12233333222111 0
Q ss_pred --------------ccCCCchhHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q psy6300 61 --------------VSDLSPELLLYRASTVH--NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG 124 (185)
Q Consensus 61 --------------~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g 124 (185)
..+..|.+|||+|+..| +.+++++|++.|.+++.. +..|.||||+|+..|+.+++++|++.|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 119 NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK--DKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp TCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred hhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 14447899999999999 999999999999999876 889999999999999999999999999
Q ss_pred CC-----CCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 125 LK-----INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 125 ~~-----~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++ ++..|..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus 197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~ 261 (364)
T 3ljn_A 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK 261 (364)
T ss_dssp SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHH
T ss_pred cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHH
Confidence 98 9999999999999999999999999999999999999999999999999999999876
No 24
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.5e-35 Score=206.00 Aligned_cols=171 Identities=16% Similarity=0.067 Sum_probs=148.8
Q ss_pred CCCCCC----CCCCCchHHHHHHhc---CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH
Q psy6300 2 VATDDV----SDLSPELLLYRASTV---HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS 74 (185)
Q Consensus 2 ~~~~~~----~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 74 (185)
|++++. .|..|.||||+|+.. |+.+++++|++.|++++..+.. ........+..|.+|||+|+
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~----------~~~~~~~~d~~g~t~L~~A~ 98 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL----------VNAQCTDEFYQGHSALHIAI 98 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG----------GGCCCCSTTTTTCCHHHHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh----------cccccccccccCCCHHHHHH
Confidence 567777 899999999999999 9999999999999877643310 00001111237999999999
Q ss_pred hcCCHHHHHHHHHcCCCCCCCCCCCC-------------CChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCcHH
Q psy6300 75 TVHNLPVMCHALALGASKDWTNPNDD-------------HRTYLHQAVIGNSVMACEYLIL---NGLKINCPDAQGKTPL 138 (185)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~t~l 138 (185)
..|+.+++++|+++|.+++.. +.. |.||||+|+..|+.+++++|++ .|++++..|..|.|||
T Consensus 99 ~~g~~~~v~~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL 176 (256)
T 2etb_A 99 EKRSLQCVKLLVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176 (256)
T ss_dssp HTTCHHHHHHHHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred HcCCHHHHHHHHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH
Confidence 999999999999999999876 444 9999999999999999999999 9999999999999999
Q ss_pred HHHHH--hCCHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300 139 YLATE--LGHTS-------QVCLLLKHKADQ-------HIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 139 ~~A~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
|+|+. .++.+ ++++|++.|+++ +.++..|.|||++|+..|+.++++
T Consensus 177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence 99999 77888 999999999999 899999999999999999999876
No 25
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=3.8e-34 Score=189.51 Aligned_cols=150 Identities=23% Similarity=0.211 Sum_probs=140.1
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCC-CCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGAS-KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA 90 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 90 (185)
+.+|||.|+..|+.+++++|++.+.. ++..+. .|.+|||+|+..|+.+++++|+++|.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE---------------------RGFTPLIWASAFGEIETVRFLLEWGA 60 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 46899999999999999999999876 555555 89999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy6300 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP 170 (185)
Q Consensus 91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 170 (185)
+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus 61 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 138 (172)
T 3v30_A 61 DPHIL--AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138 (172)
T ss_dssp CTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred Cchhh--cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 99876 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccc
Q psy6300 171 LTLAVEKANADIVT 184 (185)
Q Consensus 171 l~~A~~~~~~~~~~ 184 (185)
|++|+..|+.++++
T Consensus 139 l~~A~~~~~~~~~~ 152 (172)
T 3v30_A 139 MDLAVALGYRKVQQ 152 (172)
T ss_dssp HHHHHHHTCHHHHH
T ss_pred HHHHHHhCcHHHHH
Confidence 99999999998875
No 26
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2e-34 Score=201.94 Aligned_cols=179 Identities=21% Similarity=0.120 Sum_probs=118.0
Q ss_pred CCCCCCCCCCchHHHHHHhcC-------------ChHHHHHHHHcCCCCCCC-CCCCCCc-------------hhhHHhh
Q psy6300 3 ATDDVSDLSPELLLYRASTVH-------------NLPVMCHALALGASKDWT-NPNDDHR-------------TYLHQAV 55 (185)
Q Consensus 3 ~~~~~~~~~g~~~l~~A~~~g-------------~~~~~~~ll~~g~~~~~~-~~~~~~~-------------~~~~~~~ 55 (185)
.+++.+|..|.||||+|+..| +.+++++|++.|.+++.. +....++ +.+...+
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 80 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 368899999999999999987 899999999999987653 3333333 2223333
Q ss_pred ccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q psy6300 56 IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG 134 (185)
Q Consensus 56 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~ 134 (185)
.+.+. .+..|.+|||+|+..|+.+++++|++.+. +++.. +..|.||||+|+..++.+++++|++.|++++..|..|
T Consensus 81 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 157 (253)
T 1yyh_A 81 ADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR--MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157 (253)
T ss_dssp CCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC--CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc--CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence 33333 34488999999999999999999999886 66654 7889999999999999999999999999999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 135 KTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 135 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.||||+|+..++.+++++|++.|++++.++..|.|||++|+..|+.++++
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999998875
No 27
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=201.57 Aligned_cols=174 Identities=21% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHHH
Q psy6300 6 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLYR 72 (185)
Q Consensus 6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~ 72 (185)
+..|..|.||||+|+..|+.+++++|++.|++++.++....++ +++...+.+.+ ..+..|.+|||+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~ 131 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFN 131 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHH
Confidence 3445555555555555555555555555555555444433322 11111111111 122255555555
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Q psy6300 73 ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152 (185)
Q Consensus 73 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~ 152 (185)
|+..|+.+++++|++.+.+++. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 208 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC---SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 5555555555555555555543 2335555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 153 Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
|++.|++++. +..|.|||++|+..++.++++
T Consensus 209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 209 LLESGADVNQ-GKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence 5555555553 455555555555555555543
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.1e-33 Score=193.63 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=92.4
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCC-CCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTN-PNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA 85 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 85 (185)
..|..|.||||+|+..|+.+++++|++.|++++... .+. .|.+|||+|+..|+.+++++|
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-------------------~g~t~L~~A~~~~~~~~~~~L 91 (228)
T 2dzn_A 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-------------------SGWTPFHIACSVGNLEVVKSL 91 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-------------------TSCCHHHHHHHHCCHHHHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-------------------CCCCHHHHHHHcCCHHHHHHH
Confidence 477888888888888888888888888885544332 111 455555555555555555555
Q ss_pred HHcC--CCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCC
Q psy6300 86 LALG--ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK-ADQHI 162 (185)
Q Consensus 86 l~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~ 162 (185)
++.+ .+++. .+..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.| ++++.
T Consensus 92 l~~g~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 169 (228)
T 2dzn_A 92 YDRPLKPDLNK--ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169 (228)
T ss_dssp HSSSSCCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC
T ss_pred HhCCCCccccc--CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC
Confidence 5555 33332 2445555555555555555555555555555555555555555555555555555555555 55555
Q ss_pred CCCCCCcHHHHHHHhCCcccc
Q psy6300 163 VDSSGVEPLTLAVEKANADIV 183 (185)
Q Consensus 163 ~~~~~~t~l~~A~~~~~~~~~ 183 (185)
++..|.||||+|+..|+.+++
T Consensus 170 ~d~~g~t~L~~A~~~~~~~~v 190 (228)
T 2dzn_A 170 QDKQGWTPLFHALAEGHGDAA 190 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHH
Confidence 555555555555555555544
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=201.53 Aligned_cols=175 Identities=25% Similarity=0.201 Sum_probs=144.2
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCC--------CCCCCCC--------------chhhHHhhccCCcccCC
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDW--------TNPNDDH--------------RTYLHQAVIGVNDVSDL 64 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~~~~~ 64 (185)
-+|..+.++|+.|+..|+++++++|++.|.+... .+....+ ...+...+.+.+. .+.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTC-CCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCC
Confidence 4677789999999999999999999998875321 1111111 1122223333333 344
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
.|.||||+|+..|+.+++++|++.+++++.. +..|.||++.|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~--~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGAR--NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc--CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence 8999999999999999999999999999876 78899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
|+.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus 163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~ 202 (269)
T 4b93_B 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE 202 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999886
No 30
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=2.8e-34 Score=188.95 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=138.8
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHHcC-CCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALALG-ASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA 85 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 85 (185)
+.+..|.+||+.|+..|+.+++++|++.+ .+++..+. .|.+|||+|+..|+.+++++|
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~L 61 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG---------------------RQSTPLHFAAGYNRVSVVEYL 61 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT---------------------TCCCHHHHHHHTTCHHHHHHH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc---------------------CCCCHHHHHHHcChHHHHHHH
Confidence 45778999999999999999999998744 34444443 788999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Q psy6300 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDS 165 (185)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 165 (185)
++++.+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++.
T Consensus 62 l~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 139 (165)
T 3twr_A 62 LQHGADVHAK--DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139 (165)
T ss_dssp HHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HhcCCCCCcc--CCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence 9999999876 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhCCccccc
Q psy6300 166 SGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 166 ~~~t~l~~A~~~~~~~~~~ 184 (185)
.|.||+++|.. ++.++++
T Consensus 140 ~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 140 DGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp TSCCTGGGSCT-TCHHHHH
T ss_pred CCCChhHhHhc-CChHHHH
Confidence 99999999876 7777765
No 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.3e-33 Score=196.06 Aligned_cols=181 Identities=23% Similarity=0.187 Sum_probs=136.6
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCccc------
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVS------ 62 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~------ 62 (185)
|++++..+..|.||||+|+..|+.+++++|++.|++++..+....++ +++...+.+.+...
T Consensus 62 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 141 (285)
T 1wdy_A 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence 56667777777777777777777777777777777766655443333 11122222221110
Q ss_pred ---CCCchhHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCC
Q psy6300 63 ---DLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGNS----VMACEYLILNGLKINCPDAQG 134 (185)
Q Consensus 63 ---~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~ 134 (185)
+..|.+|||+|+..|+.+++++|++. +.+++.. +..|.||||.|+..++ .+++++|++.|++++..+..|
T Consensus 142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g 219 (285)
T 1wdy_A 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219 (285)
T ss_dssp HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC--CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTS
T ss_pred HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc--CCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCC
Confidence 34677888888888888888888876 7777765 7788888888888888 888888888888888888889
Q ss_pred CcHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 135 KTPLYLATELGHTSQVCLLLK-HKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 135 ~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.||||+|+..++.+++++|++ .|++++.++..|.|||++|+..|+.++++
T Consensus 220 ~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~ 270 (285)
T 1wdy_A 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence 999999999999999999988 78888888889999999999988888775
No 32
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.6e-33 Score=201.35 Aligned_cols=182 Identities=24% Similarity=0.193 Sum_probs=147.5
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 68 (185)
+.+++.+|..|.||||+|+..|+.+++++|++.|++++..+....++ +++...+.+.+. .+..|.+
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~g~t 126 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFT 126 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCC
Confidence 56778888999999999999999999999999999888877655444 222333333333 3347889
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCC----------------------------------------------------
Q psy6300 69 LLYRASTVHNLPVMCHALALGASKDWTN---------------------------------------------------- 96 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~---------------------------------------------------- 96 (185)
|||+|+..|+.+++++|+++|.+++...
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (351)
T 3utm_A 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK 206 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc
Confidence 9999999999999999999888876431
Q ss_pred CCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy6300 97 PNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTL 173 (185)
Q Consensus 97 ~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~ 173 (185)
.+..|.||||.|+.. +..+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+
T Consensus 207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~ 286 (351)
T 3utm_A 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR 286 (351)
T ss_dssp CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 134567888888888 55788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCccccc
Q psy6300 174 AVEKANADIVT 184 (185)
Q Consensus 174 A~~~~~~~~~~ 184 (185)
|+..|+.++++
T Consensus 287 A~~~~~~~~v~ 297 (351)
T 3utm_A 287 AALAGHLQTCR 297 (351)
T ss_dssp HHHHTCHHHHH
T ss_pred HHHcCcHHHHH
Confidence 99999988875
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.8e-34 Score=200.83 Aligned_cols=179 Identities=27% Similarity=0.232 Sum_probs=149.8
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCC---CCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGAS---KDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~---~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 68 (185)
.+..|..|.||||+|+..|+.+++++|++.|++ ++.++....++ +.+...+.+.+ ..+..|.+
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence 467899999999999999999999999999988 45555444433 22233333333 33448999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCC---------------------------------------------CCCCCCCCCh
Q psy6300 69 LLYRASTVHNLPVMCHALALGASKD---------------------------------------------WTNPNDDHRT 103 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~~~~---------------------------------------------~~~~~~~~~~ 103 (185)
|||+|+..|+.+++++|++.+.+.. ...++..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 9999999999999999998776521 1123678999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccc
Q psy6300 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182 (185)
Q Consensus 104 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~ 182 (185)
|||.|+..|+.+++++|++.|++++..+.. |.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.++
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 999999999999999999999999998854 9999999999999999999999999999999999999999999999988
Q ss_pred cc
Q psy6300 183 VT 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 241 v~ 242 (282)
T 1oy3_D 241 AR 242 (282)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 34
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.8e-33 Score=191.89 Aligned_cols=176 Identities=24% Similarity=0.170 Sum_probs=148.7
Q ss_pred CCCCCCCchHHHHHHhcCChHHHHHHHH----cCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300 6 DVSDLSPELLLYRASTVHNLPVMCHALA----LGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~----~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 68 (185)
+.+|..|.||||+|+..|+.+++++|++ .|.+++..+....++ +++...+.+.+. .+..|.+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t 81 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQT 81 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCC
Confidence 4578999999999999999999999887 788888877655544 223333333333 3448899
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300 69 LLYRASTVHNLPVMCHALALGA----SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE 143 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~ 143 (185)
|||+|+..++.+++++|++.+. +++.. +..|.||||.|+..++.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEAR--NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccc--CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 9999999999999999999887 55543 7789999999999999999999999999999888 789999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999998875
No 35
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=100.00 E-value=3.6e-33 Score=182.02 Aligned_cols=148 Identities=24% Similarity=0.290 Sum_probs=138.9
Q ss_pred CchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300 12 PELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA 90 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 90 (185)
+.+||+.|+..|+.+++++|++. +.+++..+. .|.+|||+ +..|+.+++++|++.|.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~-~~~~~~~~v~~Ll~~g~ 59 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR---------------------FGKTALQV-MMFGSTAIALELLKQGA 59 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT---------------------TSCCHHHH-SCTTCHHHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC---------------------CCCcHHHH-HHcCCHHHHHHHHHCCC
Confidence 57999999999999999999988 336766666 89999999 99999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Q psy6300 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEP 170 (185)
Q Consensus 91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 170 (185)
+++.. +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++. ++++.++..|.||
T Consensus 60 ~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~ 136 (156)
T 1bd8_A 60 SPNVQ--DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP 136 (156)
T ss_dssp CTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH
T ss_pred CCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH
Confidence 99876 78999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHhCCccccc
Q psy6300 171 LTLAVEKANADIVT 184 (185)
Q Consensus 171 l~~A~~~~~~~~~~ 184 (185)
|++|+..|+.++++
T Consensus 137 l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 137 LELALQRGAQDLVD 150 (156)
T ss_dssp HHHHHHSCCHHHHH
T ss_pred HHHHHHcCcHHHHH
Confidence 99999999999876
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.3e-33 Score=194.02 Aligned_cols=152 Identities=24% Similarity=0.251 Sum_probs=139.6
Q ss_pred CCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300 11 SPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG 89 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~ 89 (185)
.|.||||.|+..|+.+++++|++. |++++.++. .|.+|||+|+..|+.+++++|++.+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~---------------------~g~t~L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA---------------------MGETALHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 589999999999999999999997 999888877 9999999999999999999999998
Q ss_pred CCCCC---CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-------------CCCcHHHHHHHhCCHHHHHHH
Q psy6300 90 ASKDW---TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA-------------QGKTPLYLATELGHTSQVCLL 153 (185)
Q Consensus 90 ~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-------------~~~t~l~~A~~~~~~~~v~~L 153 (185)
.++.. ...+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..++.+++++|
T Consensus 61 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 140 (232)
T 2rfa_A 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140 (232)
T ss_dssp GGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred chhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 87621 11367899999999999999999999999999988765 799999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300 154 LKHKADQHIVDSSGVEPLTLAVEKANADIV 183 (185)
Q Consensus 154 l~~g~~~~~~~~~~~t~l~~A~~~~~~~~~ 183 (185)
+++|++++.++..|.||||+|+..++.+++
T Consensus 141 l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~ 170 (232)
T 2rfa_A 141 IEHGADIRAQDSLGNTVLHILILQPNKTFA 170 (232)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence 999999999999999999999999998765
No 37
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-33 Score=209.36 Aligned_cols=180 Identities=22% Similarity=0.188 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCch-------------hhHHhhccCCcccCCCchh
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT-------------YLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 68 (185)
|++++..+..|.||||.|+..|+.+++++|++.|++++..+....++- ++...+.+. ...+..|.+
T Consensus 202 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t 280 (437)
T 1n11_A 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLT 280 (437)
T ss_dssp TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 567888888999999999999999999999999998887765544431 122222222 233448899
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 148 (185)
|||+|+..|+.+++++|++++.+++.. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+
T Consensus 281 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~ 358 (437)
T 1n11_A 281 PLHLVAQEGHVPVADVLIKHGVMVDAT--TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCC--CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCccCCCC--CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH
Confidence 999999999999999999999999875 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++++|+++|++++.++..|.||+++|...|+.++++
T Consensus 359 iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~ 394 (437)
T 1n11_A 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394 (437)
T ss_dssp HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999999887764
No 38
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=197.68 Aligned_cols=120 Identities=22% Similarity=0.143 Sum_probs=108.4
Q ss_pred cCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q psy6300 62 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141 (185)
Q Consensus 62 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A 141 (185)
.+..|.||||+|+..|+.+++++|++.+.+++.. +..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A 164 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV--TADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEA 164 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHH
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHH
Confidence 3448899999999999999999999999888875 788999999999999999999999999998854 4589999999
Q ss_pred HHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 142 TELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 142 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+..++.+++++|++.|++++.++..|.|||++|+..|+.++++
T Consensus 165 ~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~ 207 (285)
T 3d9h_A 165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 9999999999999999999999999999999999999988875
No 39
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.4e-33 Score=207.62 Aligned_cols=180 Identities=26% Similarity=0.250 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchh
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPEL 68 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 68 (185)
|++++..+..|.||||.|+..|+.+++++|++.|++++..+....++ +++...+.+.+.. +..|.+
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t 82 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQT 82 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCC
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCC
Confidence 67788888888888888888888888888888888887776554443 2233333333333 337788
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHH
Q psy6300 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 148 (185)
|||+|+..|+.+++++|+++|.+++.. +..|.||||.|+..|+.+++++|++.+++.+..+..|.||||+|+..++.+
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence 888888888888888888888877765 677788888888888888888888887777777777888888888888888
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 149 ~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++++|++.|++++..+..|.|||++|+..++.++++
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 196 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 888888888887777777888888888877777664
No 40
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=195.35 Aligned_cols=169 Identities=21% Similarity=0.149 Sum_probs=142.6
Q ss_pred CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHHHHHhcC
Q psy6300 11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLYRASTVH 77 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 77 (185)
+|.||||+|+..|+.+++++|++.|++++..+....++ +.+...+.+.+. .+..|.+|||+|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcC
Confidence 68999999999999999999999999998887765554 223333333333 3448889999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300 78 NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157 (185)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 157 (185)
+.+++++|++.+.+++. +..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|
T Consensus 81 ~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp CHHHHHHHHHTTCCSSC---SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999988875 456889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 158 ADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 158 ~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++++. +..|.||||+|+..++.++++
T Consensus 158 ~~~~~-~~~g~t~Lh~A~~~~~~~~v~ 183 (261)
T 2xai_A 158 ADVNQ-GKGQDSPLHAVARTASEELAC 183 (261)
T ss_dssp CCTTC-CBTTBCHHHHHHHHTCHHHHH
T ss_pred CCCCC-CCCCCChHHHHHHcCCHHHHH
Confidence 99985 788999999999999988875
No 41
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=2.1e-33 Score=187.18 Aligned_cols=153 Identities=17% Similarity=0.039 Sum_probs=138.6
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHc-CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALAL-GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA 87 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 87 (185)
++.+.++|+.|+..|+.+++++|++. +.+++..+. .|.+|||+|+..|+.+++++|++
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~ 60 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD---------------------HGFSPLHWACREGRSAVVEMLIM 60 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC---------------------CCCCHHHHHHHcCcHHHHHHHHH
Confidence 34578899999999999999999988 456666665 89999999999999999999999
Q ss_pred cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300 88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG 167 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 167 (185)
.+.+++.. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus 61 ~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 138 (179)
T 3f6q_A 61 RGARINVM--NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138 (179)
T ss_dssp TTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS
T ss_pred cCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC
Confidence 99999876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhCCccccc
Q psy6300 168 VEPLTLAVEKANADIVT 184 (185)
Q Consensus 168 ~t~l~~A~~~~~~~~~~ 184 (185)
.||+++|+..++.++++
T Consensus 139 ~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 139 EMPVDKAKAPLRELLRE 155 (179)
T ss_dssp CCGGGGSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 99999999988777654
No 42
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.4e-32 Score=198.63 Aligned_cols=181 Identities=24% Similarity=0.221 Sum_probs=125.5
Q ss_pred CCCCCCCCCC-CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------------------------h
Q psy6300 2 VATDDVSDLS-PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------------------------T 49 (185)
Q Consensus 2 ~~~~~~~~~~-g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------------------------~ 49 (185)
|++++.++.. |.||||+|+..|+.+++++|+++|++++.++.....+ +
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t 127 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence 7899988764 9999999999999999999999999988766544333 1
Q ss_pred hhHHhh---------------ccCC---------cccCCCchhHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCChH
Q psy6300 50 YLHQAV---------------IGVN---------DVSDLSPELLLYRASTVHNLPVMCHALA-LGASKDWTNPNDDHRTY 104 (185)
Q Consensus 50 ~~~~~~---------------~~~~---------~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~ 104 (185)
.++... .+.+ ...+..|.||||+|+..|+.+++++|++ .|.+++.. +..|.++
T Consensus 128 ~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~--d~~g~t~ 205 (337)
T 4g8k_A 128 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--DNMGRNA 205 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC--CTTSCCH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc--CCCCCcH
Confidence 111111 1111 1112245666666666666666666663 45666553 5556666
Q ss_pred HHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHhCC
Q psy6300 105 LHQAVIGNS----VMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH-KADQHIVDSSGVEPLTLAVEKAN 179 (185)
Q Consensus 105 l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~ 179 (185)
++.++..+. ..++++|++.|++++..|..|.||||+|+..++.+++++|++. |++++.++..|.||||+|+..|+
T Consensus 206 l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~ 285 (337)
T 4g8k_A 206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 285 (337)
T ss_dssp HHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC
Confidence 655443321 2355666666777777777788888888888888888888865 68888888888888888888888
Q ss_pred ccccc
Q psy6300 180 ADIVT 184 (185)
Q Consensus 180 ~~~~~ 184 (185)
.++++
T Consensus 286 ~~iv~ 290 (337)
T 4g8k_A 286 KKIAE 290 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 43
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-34 Score=207.04 Aligned_cols=154 Identities=23% Similarity=0.261 Sum_probs=119.1
Q ss_pred CCCCCC-CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC--
Q psy6300 2 VATDDV-SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN-- 78 (185)
Q Consensus 2 ~~~~~~-~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-- 78 (185)
|++++. +|..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~---------------------~g~TpLh~A~~~g~~~ 178 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---------------------MGESCLVKAVKSVNNY 178 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT---------------------TCCCHHHHHHHSSHHH
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHhcccc
Confidence 688999 899999999999999999999999999999998877 55566666665555
Q ss_pred -HHHHHHHHHcC-CCCCCCCCCCCCChHHHHHHh----cCCHHHHHHHHHcCC---------------------------
Q psy6300 79 -LPVMCHALALG-ASKDWTNPNDDHRTYLHQAVI----GNSVMACEYLILNGL--------------------------- 125 (185)
Q Consensus 79 -~~~~~~ll~~~-~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~g~--------------------------- 125 (185)
.+.+..+++.+ .+++.. +..|.||||+|+. .|+.+++++|++.+.
T Consensus 179 ~~~~~~~ll~~~~~~~~~~--d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 256 (327)
T 1sw6_A 179 DSGTFEALLDYLYPCLILE--DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256 (327)
T ss_dssp HTTCHHHHHHHHGGGGGEE--CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred cHHHHHHHHHhhhccccCC--CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence 34444444433 233332 5556666666665 556666665554421
Q ss_pred ------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhC
Q psy6300 126 ------------------KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178 (185)
Q Consensus 126 ------------------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~ 178 (185)
+++..|..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..|
T Consensus 257 ~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp ---CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred cCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 57888999999999999999999999999999999999999999999998664
No 44
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.6e-33 Score=197.45 Aligned_cols=154 Identities=21% Similarity=0.185 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++..|..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.++
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---------------------~g~tpL~~A~~~g~~~~ 121 (299)
T 1s70_B 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN---------------------EGWIPLHAAASCGYLDI 121 (299)
T ss_dssp CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCcHHHHHHHcCCHHH
Confidence 466677777777777777777777777777777777666555 78888888888888888
Q ss_pred HHHHHHcCCCCCCCC----------------------------------------------------------CCCCCCh
Q psy6300 82 MCHALALGASKDWTN----------------------------------------------------------PNDDHRT 103 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~----------------------------------------------------------~~~~~~~ 103 (185)
+++|+++|.+++... .+..|.|
T Consensus 122 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t 201 (299)
T 1s70_B 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201 (299)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence 888888887776431 1234667
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy6300 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVE 176 (185)
Q Consensus 104 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~ 176 (185)
|||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|..
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred HHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 7777888888888888888888888888888888888888888888888888888888888888888887754
No 45
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.6e-33 Score=197.97 Aligned_cols=170 Identities=15% Similarity=0.058 Sum_probs=143.5
Q ss_pred CCCCCCC----CCCchHHHHHH---hcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHh
Q psy6300 3 ATDDVSD----LSPELLLYRAS---TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75 (185)
Q Consensus 3 ~~~~~~~----~~g~~~l~~A~---~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 75 (185)
++++..+ ..|.||||+|+ ..|+.+++++|++.|+++..... .........+..|.||||+|+.
T Consensus 33 ~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~----------~~~~~~~~~d~~g~t~L~~A~~ 102 (260)
T 3jxi_A 33 KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE----------FINSPFRDVYYRGQTALHIAIE 102 (260)
T ss_dssp CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH----------HHTCCBCCSSEESBCHHHHHHH
T ss_pred CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh----------hhcccccccccCCCCHHHHHHH
Confidence 4455444 67999999999 77999999999999865432100 0001111222388999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCC--------------CCCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCcHH
Q psy6300 76 VHNLPVMCHALALGASKDWTNPN--------------DDHRTYLHQAVIGNSVMACEYLIL---NGLKINCPDAQGKTPL 138 (185)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~t~l 138 (185)
.|+.+++++|+++|.+++.. + ..|.||||+|+..|+.+++++|++ .|++++..|..|.|||
T Consensus 103 ~g~~~~v~~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL 180 (260)
T 3jxi_A 103 RRCKHYVELLVEKGADVHAQ--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180 (260)
T ss_dssp TTCHHHHHHHHHTTCCTTCC--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred cCCHHHHHHHHhCCCCcCcc--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH
Confidence 99999999999999999876 4 579999999999999999999999 9999999999999999
Q ss_pred HHHHHhCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHhCCccccc
Q psy6300 139 YLATELGH---------TSQVCLLLKHKADQ-------HIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 139 ~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
|+|+..++ .+++++|++.|+++ +.++..|.||||+|+..|+.++++
T Consensus 181 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 99999887 69999999999998 679999999999999999999886
No 46
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.9e-33 Score=199.26 Aligned_cols=175 Identities=18% Similarity=0.159 Sum_probs=143.3
Q ss_pred CCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHH
Q psy6300 4 TDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLL 70 (185)
Q Consensus 4 ~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l 70 (185)
+++.+|..|.||||+|+..|+.+++++|++.|++++..+ ..++ +++...+.+.+. .+..|.|||
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L 99 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTAL 99 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHH
Confidence 578899999999999999999999999999999887763 2222 223333333333 344888999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q psy6300 71 YRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ 149 (185)
Q Consensus 71 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~ 149 (185)
|+|+..|+.+++++|+++|.+++.. +..| .||||.|+..|+.+++++|++.|++.... ..|.||||+|+..++.++
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGGGC--SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHH
Confidence 9999999999999999998888865 6777 79999999999999999999988776322 278899999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCcH-HHHHHHhCCccccc
Q psy6300 150 VCLLLKHKADQHIVDSSGVEP-LTLAVEKANADIVT 184 (185)
Q Consensus 150 v~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~~~~~~ 184 (185)
+++|+++|++++.++..|.|| |++|+..|+.++++
T Consensus 177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~ 212 (285)
T 3kea_A 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212 (285)
T ss_dssp HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 999999999999999999997 99999999988875
No 47
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-31 Score=190.20 Aligned_cols=182 Identities=21% Similarity=0.181 Sum_probs=155.5
Q ss_pred CCCCCCC-CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300 2 VATDDVS-DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE 67 (185)
Q Consensus 2 ~~~~~~~-~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 67 (185)
|++++.. +..|.||||+|+..|+.+++++|++.|++++..+....++ +++...+.+.+ ..+..|.
T Consensus 28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~ 106 (285)
T 1wdy_A 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGF 106 (285)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCC
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccC
Confidence 5677777 7789999999999999999999999999998877665554 22222223332 3344889
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCC--------CCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHH
Q psy6300 68 LLLYRASTVHNLPVMCHALALGASKDWTNP--------NDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPL 138 (185)
Q Consensus 68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l 138 (185)
+|||+|+..|+.+++++|++.+.+++.... +..|.||||.|+..|+.+++++|++. |++++..+..|.|||
T Consensus 107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l 186 (285)
T 1wdy_A 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186 (285)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH
Confidence 999999999999999999999988876421 46688999999999999999999987 999999999999999
Q ss_pred HHHHHhCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 139 YLATELGH----TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 139 ~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
|+|+..++ .+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus 187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 99999998 89999999999999999999999999999999988875
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.2e-33 Score=197.78 Aligned_cols=166 Identities=19% Similarity=0.162 Sum_probs=141.9
Q ss_pred CCCCCCchHHHHHHhc---CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHH
Q psy6300 7 VSDLSPELLLYRASTV---HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMC 83 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~---g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 83 (185)
..|..|.||||+|+.. |+.+++++|++.|+++... ..+ ........+..|.||||+|+..|+.++++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~-------~~~---i~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 118 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL-------KQF---VNASYTDSYYKGQTALHIAIERRNMTLVT 118 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH-------HHH---HTCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch-------hHH---hhcccccccCCCCCHHHHHHHcCCHHHHH
Confidence 4588999999999987 9999999999998754321 000 00000112238999999999999999999
Q ss_pred HHHHcCCCCCCCCCCC--------------CCChHHHHHHhcCCHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300 84 HALALGASKDWTNPND--------------DHRTYLHQAVIGNSVMACEYLIL---NGLKINCPDAQGKTPLYLATELGH 146 (185)
Q Consensus 84 ~ll~~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~t~l~~A~~~~~ 146 (185)
+|+++|.+++.. +. .|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..++
T Consensus 119 ~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 119 LLVENGADVQAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHHHTTCCTTCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHCCCCcCcc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence 999999999876 44 69999999999999999999999 999999999999999999999988
Q ss_pred ---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHhCCccccc
Q psy6300 147 ---------TSQVCLLLKHKADQH-------IVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 147 ---------~~~v~~Ll~~g~~~~-------~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.+++++|++.|++++ .++..|.|||++|+..|+.++++
T Consensus 197 ~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence 799999999999987 48999999999999999999876
No 49
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-32 Score=195.42 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=141.9
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
+..|.|||+.|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|++.
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~g~~~~v~~Ll~~ 95 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV---------------------DGLTALHQACIDDNVDMVKFLVEN 95 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT---------------------TCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC---------------------CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 44678999999999999999999999999988876 899999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC------------------------------------
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA------------------------------------ 132 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~------------------------------------ 132 (185)
|.+++.. +..|.||||+|+..|+.+++++|++.|++++..+.
T Consensus 96 ga~~~~~--~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~ 173 (299)
T 1s70_B 96 GANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173 (299)
T ss_dssp TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhh
Confidence 9999875 78999999999999999999999999998876543
Q ss_pred ------------------------CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 133 ------------------------QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 133 ------------------------~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence 4678899999999999999999999999999999999999999999998875
No 50
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=100.00 E-value=5e-33 Score=181.49 Aligned_cols=150 Identities=19% Similarity=0.127 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHH
Q psy6300 1 MVATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLP 80 (185)
Q Consensus 1 ~~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 80 (185)
|....+..+..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+ .|+.+
T Consensus 1 mep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~-~~~~~ 58 (156)
T 1bi7_B 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS---------------------YGRRPIQVMM-MGSAR 58 (156)
T ss_dssp ---------CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS---------------------SSCCTTTSSC-TTCHH
T ss_pred CCCCccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHH-cCCHH
Confidence 5566778889999999999999999999999999999988776 8999999985 89999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCh-HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300 81 VMCHALALGASKDWTNPNDDHRT-YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159 (185)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 159 (185)
++++|+++|.+++.. +..|.| |||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++
T Consensus 59 ~v~~Ll~~g~~~~~~--d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~ 136 (156)
T 1bi7_B 59 VAELLLLHGAEPNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136 (156)
T ss_dssp HHHHHHTTTCCCCCC--CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred HHHHHHHcCCCCCCc--CCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence 999999999999876 788999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHH
Q psy6300 160 QHIVDSSGVEPLTLA 174 (185)
Q Consensus 160 ~~~~~~~~~t~l~~A 174 (185)
++.++..|.||.+.+
T Consensus 137 ~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 137 TRGSNHARIDAAEGP 151 (156)
T ss_dssp ---------------
T ss_pred CCccCcCcCcccccC
Confidence 999999999998744
No 51
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.7e-33 Score=190.78 Aligned_cols=150 Identities=25% Similarity=0.187 Sum_probs=139.9
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHHcC--CCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHH
Q psy6300 8 SDLSPELLLYRASTVHNLPVMCHALALG--ASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA 85 (185)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 85 (185)
.+..|.||||.|+..|+.+++++|++.| .+++..+. .|.+|||+|+..++.+++++|
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~~~~L 126 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN---------------------QGVTCLHLAVGKKWFEVSQFL 126 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT---------------------TCCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc---------------------CCCCHHHHHHHcCCHhHHHHH
Confidence 7789999999999999999999999999 66666655 899999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCCC
Q psy6300 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLL-KHKADQHIV 163 (185)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll-~~g~~~~~~ 163 (185)
+++|.+++.. +..|.||||+|+..|+.+++++|++.| ++++..|..|.||||+|+..++.+++++|+ +.|++++.+
T Consensus 127 l~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~ 204 (228)
T 2dzn_A 127 IENGASVRIK--DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204 (228)
T ss_dssp HHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred HHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Confidence 9999999876 789999999999999999999999999 999999999999999999999999999999 889999999
Q ss_pred CCCCCcHHHHHHHhCCc
Q psy6300 164 DSSGVEPLTLAVEKANA 180 (185)
Q Consensus 164 ~~~~~t~l~~A~~~~~~ 180 (185)
+..|.||+++|...+..
T Consensus 205 ~~~g~t~l~~A~~~~~~ 221 (228)
T 2dzn_A 205 DNKGAKAEDVALNEQVK 221 (228)
T ss_dssp CTTSCBGGGGCSSTTHH
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 99999999999765443
No 52
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=186.09 Aligned_cols=180 Identities=19% Similarity=0.129 Sum_probs=141.7
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCC-CCCc-------------hhhHHhhccCCcccCCCch
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-DDHR-------------TYLHQAVIGVNDVSDLSPE 67 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~ 67 (185)
|++++..+..|.||||.|+..|+.+++++|++.|.+++..... ..++ +.+...+...+. .+..|.
T Consensus 32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~ 110 (240)
T 3eu9_A 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGC 110 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSC
T ss_pred CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCC
Confidence 6778888888888999999999999999988888877654332 2222 112222222222 334778
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHhC
Q psy6300 68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS-VMACEYLILNGLKINCPDA-QGKTPLYLATELG 145 (185)
Q Consensus 68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~ 145 (185)
+|||+|+..|+.+++++|++++.+++.. +..|.||||.|+..+. .+++++|+..|++++..+. .|.||||+|+..+
T Consensus 111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred CHHHHHHHcCHHHHHHHHHhcCCCcccc--CCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence 8888888888888888888888887765 6778888888885554 7788888888888888776 7889999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 146 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+.+++++|++.|++++.++..|.||+++|+..|+.++++
T Consensus 189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp CHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999999999988875
No 53
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.8e-33 Score=199.33 Aligned_cols=170 Identities=14% Similarity=0.048 Sum_probs=136.0
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCc-h
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSP-E 67 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~ 67 (185)
|++++.. +|.||||+|+..|+.+++++|++.|++++.++....++ +++...+.+.+.... .| .
T Consensus 54 g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~ 130 (285)
T 3kea_A 54 GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWK 130 (285)
T ss_dssp TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGG
T ss_pred CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCC
Confidence 4555655 37888888888888888888888888887766554443 223333333333333 66 8
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHHhCC
Q psy6300 68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTP-LYLATELGH 146 (185)
Q Consensus 68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~~A~~~~~ 146 (185)
+|||+|+..|+.+++++|++++.+... ...|.||||.|+..|+.+++++|++.|++++..+..|.|| ||+|+..++
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~ 207 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD 207 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCC---CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCcccc---ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC
Confidence 999999999999999999999877642 1389999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 147 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.+++++|+++|++++.++. .|+..|+.++++
T Consensus 208 ~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~ 238 (285)
T 3kea_A 208 IEMLQALFKYDINIYSANL-------ENVLLDDAEIAK 238 (285)
T ss_dssp HHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHH
Confidence 9999999999999998874 345566666654
No 54
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.5e-33 Score=203.18 Aligned_cols=180 Identities=16% Similarity=0.044 Sum_probs=148.3
Q ss_pred CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhcc------------CCcccCCCchhHH
Q psy6300 3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG------------VNDVSDLSPELLL 70 (185)
Q Consensus 3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l 70 (185)
.+++..|..|.||||+|+..|+.+++++|++.|++++..+....++ ++.+... ........|.+||
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~--L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA--LHLACKFGCVDTAKYLASVGEVHSLWHGQKPI 88 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH--HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH--HHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence 4667788899999999999999999999999999998887655544 2222211 1133334788999
Q ss_pred HHHHhcCCHHHHHHHHHc----CCCCCC---------------CCCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCC
Q psy6300 71 YRASTVHNLPVMCHALAL----GASKDW---------------TNPNDDHRTYLHQAVIGN--SVMACEYLILNGLKINC 129 (185)
Q Consensus 71 ~~a~~~~~~~~~~~ll~~----~~~~~~---------------~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~g~~~~~ 129 (185)
|+|+..|+.+++++|++. +.+++. ...+..|.||||+|+..| +.+++++|++.|++++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~ 168 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence 999999999999999887 655543 002567999999999999 99999999999999999
Q ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 130 PDAQGKTPLYLATELGHTSQVCLLLKHKAD-----QHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 130 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.|..|.||||+|+..++.+++++|++.|++ ++..+..|.||||+|+..|+.++++
T Consensus 169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 228 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228 (364)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999988 9999999999999999999998876
No 55
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=100.00 E-value=3e-32 Score=173.93 Aligned_cols=134 Identities=19% Similarity=0.120 Sum_probs=127.1
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
+++++..+..|.||||.|+..|+.+++++|++.|++++.++. .|.+|||+|+. ++.++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~-~~~~~ 59 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR---------------------FGRRPIQVMMM-GSAQV 59 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TCCTTTTTSTT-SCHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC---------------------CCCCHHHHHHc-CCHHH
Confidence 578899999999999999999999999999999999988776 89999999999 99999
Q ss_pred HHHHHHcCCCCCCCCCCCC-CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300 82 MCHALALGASKDWTNPNDD-HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 159 (185)
+++|++++.+++.. +.. |.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|+|
T Consensus 60 v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 60 AELLLLHGAEPNCA--DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCCSSCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999876 778 99999999999999999999999999999999999999999999999999999999875
No 56
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.4e-31 Score=192.32 Aligned_cols=173 Identities=24% Similarity=0.130 Sum_probs=141.6
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCC---------
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVN--------- 59 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~--------- 59 (185)
|++++.+|..|.||||+|+..|+.+++++|++.|++++..+....++ +++...+.+..
T Consensus 81 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence 56777777778888888888888888888888877777665544333 11111111111
Q ss_pred --------------------------------------------cccCCCchhHHHHHHhc---CCHHHHHHHHHcCCCC
Q psy6300 60 --------------------------------------------DVSDLSPELLLYRASTV---HNLPVMCHALALGASK 92 (185)
Q Consensus 60 --------------------------------------------~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~ 92 (185)
......+.+|||+|+.. +..+++++|++.+.++
T Consensus 161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~ 240 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240 (351)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence 12334778999999998 5579999999999999
Q ss_pred CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q psy6300 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLT 172 (185)
Q Consensus 93 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~ 172 (185)
+.. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||++
T Consensus 241 ~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~ 318 (351)
T 3utm_A 241 NEK--NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318 (351)
T ss_dssp TCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence 876 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy6300 173 LAVE 176 (185)
Q Consensus 173 ~A~~ 176 (185)
+|..
T Consensus 319 ~a~~ 322 (351)
T 3utm_A 319 MGNE 322 (351)
T ss_dssp HSCH
T ss_pred hhhH
Confidence 9844
No 57
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=100.00 E-value=1.1e-32 Score=191.65 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=111.5
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
+..|.|||+.|++.++.++++.|+++|++++.. . .+.++||.|+..|+.+++++|++.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~---------------------~~~t~L~~A~~~g~~~~v~~Ll~~ 59 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-P---------------------LPLALLLDSSLEGEFDLVQRIIYE 59 (239)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-c---------------------hhhHHHHHHHHcCCHHHHHHHHHc
Confidence 456999999999999999999999999998754 3 788999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV 168 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 168 (185)
+.+++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..+.
T Consensus 60 g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~ 137 (239)
T 1ycs_B 60 VDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137 (239)
T ss_dssp TSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred CCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence 9998876 88999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred -cHHHHH--HHhCCccccc
Q psy6300 169 -EPLTLA--VEKANADIVT 184 (185)
Q Consensus 169 -t~l~~A--~~~~~~~~~~ 184 (185)
||+++| +..|+.++++
T Consensus 138 ~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 138 QTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp CCHHHHCCSSSTTCCCHHH
T ss_pred cchHHHHHHhhhccHHHHH
Confidence 999999 7888888875
No 58
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=3.5e-33 Score=193.63 Aligned_cols=156 Identities=20% Similarity=0.155 Sum_probs=137.2
Q ss_pred CCCCCCCchHHHHHHhcCChHHHHHHHHcCC----CCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 6 DVSDLSPELLLYRASTVHNLPVMCHALALGA----SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 6 ~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
+..|..|.||||+|+..|+.+++++|++.+. +++..+. .|.+|||+|+..|+.++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 60 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN---------------------LQQTPLHLAVITNQPEI 60 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT---------------------TCCCHHHHHHHTTCHHH
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC---------------------CCCCHHHHHHHcCCHHH
Confidence 4578899999999999999999999888765 4555555 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK------INCPDAQGKTPLYLATELGHTSQVCLLLK 155 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 155 (185)
+++|+++|.+++.. +..|.||||+|+..|+.+++++|+..|.+ ++..+..|.||||+|+..++.+++++|++
T Consensus 61 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 138 (236)
T 1ikn_D 61 AEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138 (236)
T ss_dssp HHCCCSCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999875 78999999999999999999999999875 46778889999999999999999999999
Q ss_pred CCCCCCCCCC-CCCcHHHHHHHhCCccccc
Q psy6300 156 HKADQHIVDS-SGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 156 ~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~ 184 (185)
.|++++.++. .|.||||+|+..|+.++++
T Consensus 139 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~ 168 (236)
T 1ikn_D 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVS 168 (236)
T ss_dssp HTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred cCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999997 9999999999999998876
No 59
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=6e-32 Score=189.54 Aligned_cols=150 Identities=17% Similarity=0.089 Sum_probs=134.8
Q ss_pred CCchHHHHHHhcCChH----HHHHHHHcCCCCCC----CCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCH
Q psy6300 11 SPELLLYRASTVHNLP----VMCHALALGASKDW----TNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNL 79 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~----~~~~ll~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~ 79 (185)
.|.||||.|+..|+.+ ++++|++.|++++. .+. .|.||||+|+.. |+.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~---------------------~g~t~L~~A~~~~~~g~~ 59 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS---------------------TGKTCLMKAVLNLQDGVN 59 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT---------------------TTBCHHHHHHHTCBTTBC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC---------------------CCCCHHHHHHHccccchH
Confidence 4899999999999997 66778889999887 555 899999999999 999
Q ss_pred HHHHHHHHcCCCCCCC---------CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-------------CCcH
Q psy6300 80 PVMCHALALGASKDWT---------NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-------------GKTP 137 (185)
Q Consensus 80 ~~~~~ll~~~~~~~~~---------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------~~t~ 137 (185)
+++++|++.+.+++.. .+|..|.||||+|+..|+.+++++|++.|++++..+.. |.||
T Consensus 60 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp 139 (256)
T 2etb_A 60 ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139 (256)
T ss_dssp TTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred HHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence 9999999988776532 12467999999999999999999999999999998876 9999
Q ss_pred HHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHH--hCCcc
Q psy6300 138 LYLATELGHTSQVCLLLK---HKADQHIVDSSGVEPLTLAVE--KANAD 181 (185)
Q Consensus 138 l~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~--~~~~~ 181 (185)
||+|+..++.+++++|++ .|++++.++..|.||||+|+. .++.+
T Consensus 140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~ 188 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence 999999999999999999 999999999999999999999 66655
No 60
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=6.2e-31 Score=178.01 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=140.3
Q ss_pred CCCchHHHHHHhcCChHHHHHHHHcCC-CCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 10 LSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 10 ~~g~~~l~~A~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
..+.|||+.|+..|+.+.++.|++.+. +++..+. .|.+|||+|+..|+.+++++|++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT---------------------EGNTPLNIAVHNNDIEIAKALIDR 61 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHHHc
Confidence 468899999999999999999998776 7777766 899999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCC
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK-ADQHIVDSS 166 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~ 166 (185)
|.+++.. +..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..++.+++++|++.| ++++.++..
T Consensus 62 g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 139 (201)
T 3hra_A 62 GADINLQ--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF 139 (201)
T ss_dssp TCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence 9999875 788999999999999999999999 567899999999999999999999999999999999 999999999
Q ss_pred CCcHHHHHHHhCC-----ccccc
Q psy6300 167 GVEPLTLAVEKAN-----ADIVT 184 (185)
Q Consensus 167 ~~t~l~~A~~~~~-----~~~~~ 184 (185)
|.||||+|+..++ .++++
T Consensus 140 g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 140 GYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp SCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999887 56654
No 61
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=1e-30 Score=181.14 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=141.5
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCc-------------hhhHHhhccCCcccCCCchhHHH
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPELLLY 71 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~ 71 (185)
++..|..|.++|+.|+..|+.+++++|++.|++++..+....++ +++...+..........+.+|||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 45678899999999999999999999999999988876654433 22333333333444445788888
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCC-HHHH
Q psy6300 72 RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH-TSQV 150 (185)
Q Consensus 72 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~-~~~v 150 (185)
+|+..|+.+++++|++.+.+++.. +..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence 888888888888888888887765 6778888888888888888888888888888888888888888886665 6788
Q ss_pred HHHHhCCCCCCCCCC-CCCcHHHHHHHhCCccccc
Q psy6300 151 CLLLKHKADQHIVDS-SGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 151 ~~Ll~~g~~~~~~~~-~~~t~l~~A~~~~~~~~~~ 184 (185)
++|++.|++++..+. .|.|||++|+..|+.++++
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence 888888888888776 7888888888888887765
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=5e-33 Score=192.15 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=139.6
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL 86 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 86 (185)
..+..|.||||.|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|+
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---------------------~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE---------------------EGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC---------------------CCCCHHHHHHHcCCHHHHHHHH
Confidence 3456688899999999999999999999999988777 8999999999999999999999
Q ss_pred HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH--HHhCCHHHHHHHHhCCCCCC--
Q psy6300 87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLA--TELGHTSQVCLLLKHKADQH-- 161 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A--~~~~~~~~v~~Ll~~g~~~~-- 161 (185)
+.|.+++.. |..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+| +..++.+++++|++.|++++
T Consensus 75 ~~ga~~n~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 75 TAGANVNSP--DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp HTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred HCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 999999876 8899999999999999999999999999999987 5999999999 99999999999998765543
Q ss_pred ------------------------------CCCCCCCcHHHHHHHhCCccccc
Q psy6300 162 ------------------------------IVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 162 ------------------------------~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++..|.|||++|+..|+.++++
T Consensus 153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 34667888999998888888875
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.6e-31 Score=175.83 Aligned_cols=143 Identities=22% Similarity=0.151 Sum_probs=130.1
Q ss_pred CCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300 5 DDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH 84 (185)
Q Consensus 5 ~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 84 (185)
++..|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.+++++
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~ 87 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK---------------------ERESALSLASTGGYTDIVGL 87 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------------------TCCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc---------------------cCCCHHHHHHHCCCHHHHHH
Confidence 677899999999999999999999999999999988776 88999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC
Q psy6300 85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164 (185)
Q Consensus 85 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~ 164 (185)
|++++.+++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++...++
T Consensus 88 Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 88 LLERDVDINIY--DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165 (172)
T ss_dssp HHTTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred HHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence 99999999875 7899999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCcH
Q psy6300 165 SSGVEP 170 (185)
Q Consensus 165 ~~~~t~ 170 (185)
..+.||
T Consensus 166 ~~~~~p 171 (172)
T 3v30_A 166 LVPADP 171 (172)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 888876
No 64
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.7e-31 Score=188.96 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHc----CCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc-
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALAL----GASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV- 76 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~- 76 (185)
++..+..|..|.||||.|+..|+.++++.|++. +.+++... ...+..|.||||+|+..
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-----------------~~~~~~g~tpL~~A~~~~ 65 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE-----------------FKDPETGKTCLLKAMLNL 65 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG-----------------GSCTTTCCCHHHHHHHSC
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc-----------------cccCcCCCCHHHHHHHHH
Confidence 456778899999999999999999999888874 44443110 01122899999999987
Q ss_pred --CCHHHHHHHHHcCCCC---------CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-------------
Q psy6300 77 --HNLPVMCHALALGASK---------DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA------------- 132 (185)
Q Consensus 77 --~~~~~~~~ll~~~~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~------------- 132 (185)
|+.+++++|++.|.+. ....++..|.||||+|+..|+.+++++|++.|++++..+.
T Consensus 66 ~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 145 (273)
T 2pnn_A 66 HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145 (273)
T ss_dssp BTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCC
T ss_pred hcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccc
Confidence 9999999999987542 2222356899999999999999999999999999999887
Q ss_pred -CCCcHHHHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300 133 -QGKTPLYLATELGHTSQVCLLLK---HKADQHIVDSSGVEPLTLAVEKAN 179 (185)
Q Consensus 133 -~~~t~l~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~~~~ 179 (185)
.|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..|+
T Consensus 146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccC
Confidence 79999999999999999999999 999999999999999999999887
No 65
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=2.8e-31 Score=195.54 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=149.7
Q ss_pred CCCCCCC-CCCchHHHHHHhcCChHHHHHHH--------HcCCCCCCCCCCCCCc-------------hhhHHhhccCCc
Q psy6300 3 ATDDVSD-LSPELLLYRASTVHNLPVMCHAL--------ALGASKDWTNPNDDHR-------------TYLHQAVIGVND 60 (185)
Q Consensus 3 ~~~~~~~-~~g~~~l~~A~~~g~~~~~~~ll--------~~g~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 60 (185)
.+++..| ..|.||||+|+..|+.+++++|+ +.|++++..+....++ +++...+.+.+.
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~ 194 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc
Confidence 4677888 78999999999999998887765 8899999887765554 223333333333
Q ss_pred ccCCCchhHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCCChHHHHHHhcC---CHHHHHHHHHcCCCCCC-----
Q psy6300 61 VSDLSPELLLYRASTVHNLPVMCHALALG---ASKDWTNPNDDHRTYLHQAVIGN---SVMACEYLILNGLKINC----- 129 (185)
Q Consensus 61 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~Ll~~g~~~~~----- 129 (185)
.+..|.+|||+|+..|+.+++++|++.+ .+++.. +..|.||||+|+..+ +.+++++|++.|++++.
T Consensus 195 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~ 271 (373)
T 2fo1_E 195 -YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL--DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 271 (373)
T ss_dssp -CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC--CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred -cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc--CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccc
Confidence 3448889999999999999999999876 567664 788999999999887 78999999999999876
Q ss_pred ---CCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 130 ---PDAQGKTPLYLATELGHTSQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 130 ---~~~~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.+..|.||||+|+..++.+++++|++.+ ++++.++..|.||||+|+..|+.++++
T Consensus 272 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~ 330 (373)
T 2fo1_E 272 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330 (373)
T ss_dssp TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred cCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence 5678999999999999999999999876 999999999999999999999998876
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.4e-30 Score=169.56 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=125.7
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++..+..|.||||+|+. |+.+++++|++.|++++.++. .|.+|||+|+..|+.++
T Consensus 28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 85 (162)
T 1ihb_A 28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR---------------------TGFAVIHDAARAGFLDT 85 (162)
T ss_dssp CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcCCHHH
Confidence 67889999999999999999 999999999999999988776 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK-INCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 159 (185)
+++|++++.+++.. +..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..++.+++++|+++|+|
T Consensus 86 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 86 LQTLLEFQADVNIE--DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999998876 88999999999999999999999999988 589999999999999999999999999999985
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=9.7e-30 Score=167.92 Aligned_cols=133 Identities=23% Similarity=0.174 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++.+|..|.||||.|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.++
T Consensus 37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 95 (169)
T 2y1l_E 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH---------------------AGMTPLRLAALFGHLEI 95 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC---------------------CCCCHHHHHHHcCCHHH
Confidence 688999999999999999999999999999999999888776 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 157 (185)
+++|++++.+++.. +..|.||||.|+..++.+++++|++.|++++..|..|.|||++|+..++.+++++|++.|
T Consensus 96 ~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 96 VEVLLKNGADVNAN--DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999875 788999999999999999999999999999999999999999999999999999999876
No 68
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=6.8e-30 Score=170.12 Aligned_cols=142 Identities=16% Similarity=0.022 Sum_probs=133.9
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
+.+++..+..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.++
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 87 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR---------------------GDDTPLHLAASHGHRDI 87 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TCCCHHHHHHHTTCHHH
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHH
Confidence 457889999999999999999999999999999999988876 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~ 161 (185)
+++|++.|.+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.|||++|+..++.+++++|++.|++++
T Consensus 88 v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 88 VQKLLQYKADINAV--NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165 (179)
T ss_dssp HHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999876 8899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy6300 162 IVDSS 166 (185)
Q Consensus 162 ~~~~~ 166 (185)
..+..
T Consensus 166 ~~~~~ 170 (179)
T 3f6q_A 166 RIPYK 170 (179)
T ss_dssp CBCCC
T ss_pred cCCcc
Confidence 76544
No 69
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.97 E-value=2.8e-29 Score=157.68 Aligned_cols=126 Identities=29% Similarity=0.279 Sum_probs=119.3
Q ss_pred CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300 11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA 90 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 90 (185)
+|.||||.|+..|+.+++++|++.|++++..+. .|.+|||+|+..++.+++++|++.+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~ 59 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---------------------NGRTPLHLAARNGHLEVVKLLLEAGA 59 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC---------------------CCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence 589999999999999999999999999887766 88999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q psy6300 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159 (185)
Q Consensus 91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~ 159 (185)
+++.. +..|.||||.|+..++.+++++|++.|++++..+..|.|||++|+..++.+++++|+++|+|
T Consensus 60 ~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 60 DVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CCccc--CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 98875 78899999999999999999999999999999999999999999999999999999999986
No 70
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=1.1e-29 Score=184.49 Aligned_cols=151 Identities=22% Similarity=0.166 Sum_probs=130.5
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHH-cCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC----HHH
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALA-LGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN----LPV 81 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~ 81 (185)
..+..|.||||+|+..|+.+++++|++ .|++++.++. .|.++++.++..+. ..+
T Consensus 163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~---------------------~g~t~l~~~~~~~~~~~~~~i 221 (337)
T 4g8k_A 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN---------------------MGRNALIHALLSSDDSDVEAI 221 (337)
T ss_dssp -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT---------------------TSCCHHHHHHHHSCTTTHHHH
T ss_pred cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC---------------------CCCcHHHHHHHHcCcccHHHH
Confidence 456679999999999999999999995 5899988876 88888887765443 356
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 160 (185)
+++|+++|.+++.+ +..|.||||.|+..|+.+++++|+.. |++++..|..|+||||+|+..|+.++|++|+++|+++
T Consensus 222 ~~lLl~~gad~n~~--d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 222 THLLLDHGADVNVR--GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299 (337)
T ss_dssp HHHHHHTTCCTTCC--CGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred HHHHHHCCCCCCCc--CCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 78889999999876 78899999999999999999999974 7999999999999999999999999999999999998
Q ss_pred CCCCCCCCcHHHHHHHhCCcccccC
Q psy6300 161 HIVDSSGVEPLTLAVEKANADIVTL 185 (185)
Q Consensus 161 ~~~~~~~~t~l~~A~~~~~~~~~~~ 185 (185)
+.+ +||++|+..|+.+++++
T Consensus 300 n~~-----~~L~~A~~~~~~~iv~~ 319 (337)
T 4g8k_A 300 DCG-----DLVMTARRNYDHSLVKV 319 (337)
T ss_dssp TTC-----CHHHHHHHTTCHHHHHH
T ss_pred CCC-----CHHHHHHHcCCHHHHHH
Confidence 764 59999999999988763
No 71
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.97 E-value=4.1e-31 Score=176.92 Aligned_cols=149 Identities=12% Similarity=0.076 Sum_probs=131.6
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCH----HHHHHHHH
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNL----PVMCHALA 87 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~ll~ 87 (185)
+.++|+.|++.|+++.++.+++.+.+. .+ +..|.||||+|+..++. +++++|++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~--------------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~ 63 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KE--------------------SVLKSNILYDVLRNNNDEARYKISMFLIN 63 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HH--------------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--cc--------------------ccCCCCHHHHHHHcCCcchHHHHHHHHHH
Confidence 567899999999999999999887542 21 01789999999999975 58999999
Q ss_pred cCCCCCCCCCCCCCChHHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHhCC-----HHHHHHHHh
Q psy6300 88 LGASKDWTNPNDDHRTYLHQAVIGNS------VMACEYLILNGLKINCPDAQGK-TPLYLATELGH-----TSQVCLLLK 155 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~Ll~~g~~~~~~~~~~~-t~l~~A~~~~~-----~~~v~~Ll~ 155 (185)
+|++++.+ +..|.||||+|+..++ .+++++|++.|++++..|..|. ||||+|+..+. .+++++|++
T Consensus 64 ~Gadvn~~--d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~ 141 (186)
T 3t8k_A 64 KGADIKSR--TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141 (186)
T ss_dssp TTCCSSCC--CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred CCCCCCCC--CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence 99999986 8899999999998886 5789999999999999999999 99999999443 469999999
Q ss_pred -CCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 156 -HKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 156 -~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.|++++.++..|.|||++|+..|+.++++
T Consensus 142 ~~gad~~~~d~~G~TpL~~A~~~~~~~~v~ 171 (186)
T 3t8k_A 142 QSGLQLLIKDKWGLTALEFVKRCQKPIALK 171 (186)
T ss_dssp STTCCTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred hcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999999988876
No 72
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.97 E-value=2.2e-29 Score=160.55 Aligned_cols=127 Identities=21% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300 8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA 87 (185)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 87 (185)
....+.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..++.+++++|++
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~ 68 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE---------------------YGLTPLYLATAHGHLEIVEVLLK 68 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHHHHHHHH
Confidence 345578888888888888888888888888877765 78888888888888888888888
Q ss_pred cCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300 88 LGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 157 (185)
.+.+++.. |..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|
T Consensus 69 ~g~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 69 NGADVNAV--DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 88887765 678888888888888888888888888888888888888888888888888888888765
No 73
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=6e-30 Score=179.68 Aligned_cols=154 Identities=18% Similarity=0.116 Sum_probs=131.5
Q ss_pred CCCCchHHHHHHhcCChHH----HHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHH---hcCCHHH
Q psy6300 9 DLSPELLLYRASTVHNLPV----MCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS---TVHNLPV 81 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~----~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~---~~~~~~~ 81 (185)
+..+.++||.|++.|+.+. +++|++.|.+++..+. ..+..|.||||+|+ ..|+.++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~-----------------~~~~~g~t~L~~A~~~~~~g~~~~ 64 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEF-----------------REPSTGKTCLPKALLNLSAGRNDT 64 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGG-----------------SCTTTCCCHHHHHHTSCBTTBCTH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhh-----------------hccCCCCcHHHHHHHHhhcCCHHH
Confidence 4578999999999999995 4555559988876541 01117999999999 6799999
Q ss_pred HHHHHHcCCC---------CCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHH
Q psy6300 82 MCHALALGAS---------KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD--------------AQGKTPL 138 (185)
Q Consensus 82 ~~~ll~~~~~---------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~~~t~l 138 (185)
+++|++.+.+ ......|..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||
T Consensus 65 v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL 144 (260)
T 3jxi_A 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHH
T ss_pred HHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHH
Confidence 9999988744 2222234589999999999999999999999999999988 6899999
Q ss_pred HHHHHhCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300 139 YLATELGHTSQVCLLLK---HKADQHIVDSSGVEPLTLAVEKAN 179 (185)
Q Consensus 139 ~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~~~~ 179 (185)
|+|+..++.+++++|++ .|++++.++..|.||||+|+..++
T Consensus 145 ~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhcc
Confidence 99999999999999999 999999999999999999998877
No 74
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.8e-29 Score=165.31 Aligned_cols=136 Identities=21% Similarity=0.115 Sum_probs=128.2
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
+++++..|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.++
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 84 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK---------------------GRESALSLACSKGYTDI 84 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC---------------------CCCcHHHHHHHcCCHHH
Confidence 567889999999999999999999999999999999988776 88999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 160 (185)
+++|++.+.+++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+..++.+++++|++++.+.
T Consensus 85 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 85 VKMLLDCGVDVNEY--DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999875 788999999999999999999999999999999999999999999999999999999887554
No 75
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.4e-29 Score=168.50 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++..+..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.++
T Consensus 58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 116 (192)
T 2rfm_A 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF---------------------SGKTPLMWSIIFGYSEM 116 (192)
T ss_dssp HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---------------------CCCcHHHHHHHcCCHHH
Confidence 567889999999999999999999999999999999888776 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 157 (185)
+++|++.|.+++.. +..|.||||+|+..|+.+++++|++.|++++..|..|.||+++|+..++.+++++|++.|
T Consensus 117 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 117 SYFLLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999999876 889999999999999999999999999999999999999999999999999999999764
No 76
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=1.6e-29 Score=161.23 Aligned_cols=117 Identities=25% Similarity=0.309 Sum_probs=113.0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHH
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATE 143 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~A~~ 143 (185)
.+.+|||+|+..|+.+++++|++.+.+++.. +..|.||||+|+. ++.+++++|++.|++++..|.. |.||||+|+.
T Consensus 11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 87 (136)
T 1d9s_A 11 SSDAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (136)
T ss_dssp CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence 8999999999999999999999999998875 7899999999999 9999999999999999999999 9999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++.+++++|+++|++++.++..|.|||++|+..++.++++
T Consensus 88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~ 128 (136)
T 1d9s_A 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128 (136)
T ss_dssp HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999998876
No 77
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=6.9e-28 Score=165.48 Aligned_cols=157 Identities=22% Similarity=0.105 Sum_probs=135.3
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCC-CCCCCCCCCCCc-------------hhhHHhhccCCcccCCCch
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGA-SKDWTNPNDDHR-------------TYLHQAVIGVNDVSDLSPE 67 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 67 (185)
|++++..+..|.||||+|+..|+.+++++|++.+. +++..+....++ +.+...+...+. .+..|.
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~ 126 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGK 126 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCC
Confidence 67899999999999999999999999999999987 666665554443 222232233333 344899
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCH
Q psy6300 68 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147 (185)
Q Consensus 68 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~ 147 (185)
+|||+|+..|+.+++++|+++|.+++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++.
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 204 (223)
T 2f8y_A 127 SALHWAAAVNNVDAAVVLLKNGANKDMQ--NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204 (223)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch
Confidence 9999999999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q psy6300 148 SQVCLLLKHKADQH 161 (185)
Q Consensus 148 ~~v~~Ll~~g~~~~ 161 (185)
+++++|+++|+...
T Consensus 205 ~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 205 DIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHHTTCSSC
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999998754
No 78
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.1e-28 Score=158.99 Aligned_cols=128 Identities=20% Similarity=0.103 Sum_probs=119.7
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++.+ .+..|.||||.|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.++
T Consensus 25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 82 (153)
T 1awc_B 25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK---------------------VDRTPLHMAASEGHANI 82 (153)
T ss_dssp TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT---------------------TCCCHHHHHHHHTCHHH
T ss_pred CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------CCCCHHHHHHHcChHHH
Confidence 44554 578899999999999999999999999999888776 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 153 (185)
+++|+++|.+++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|
T Consensus 83 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 83 VEVLLKHGADVNAK--DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHTTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999876 88999999999999999999999999999999999999999999999999999987
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=9.1e-29 Score=162.55 Aligned_cols=132 Identities=21% Similarity=0.145 Sum_probs=122.0
Q ss_pred CCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHH
Q psy6300 3 ATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM 82 (185)
Q Consensus 3 ~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 82 (185)
.+.+..+..|.||||+|+..|+.+++++|++.|++++.++. .|.+|||+|+..|+.+++
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v 91 (165)
T 3twr_A 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK---------------------GGLVPLHNACSYGHYEVA 91 (165)
T ss_dssp TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHH
T ss_pred CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC---------------------CCCCHHHHHHHcCcHHHH
Confidence 45667788899999999999999999999999999988876 899999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q psy6300 83 CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA 158 (185)
Q Consensus 83 ~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~ 158 (185)
++|++.+.+++.. +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+. ++.+++++|++.|+
T Consensus 92 ~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 92 ELLVKHGAVVNVA--DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHHhCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 9999999999876 7899999999999999999999999999999999999999999877 88999999998875
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=4.4e-30 Score=178.49 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=133.2
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|++++.. ..|.||||.|+..|+.+++++|++.|++++.++. .|.||||+|+..|+.++
T Consensus 28 g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---------------------~g~t~L~~A~~~g~~~~ 85 (239)
T 1ycs_B 28 GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND---------------------EGITALHNAVCAGHTEI 85 (239)
T ss_dssp ----------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT---------------------TSCCHHHHHHHHTCHHH
T ss_pred CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCCHHH
Confidence 4566654 6789999999999999999999999999988877 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHH--HHhCCHHHHHHHHhCCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK-TPLYLA--TELGHTSQVCLLLKHKA 158 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~~A--~~~~~~~~v~~Ll~~g~ 158 (185)
+++|+++|.+++.. |..|.||||+|+..|+.+++++|++.|++++..+..+. ||||+| +..++.+++++|++.|+
T Consensus 86 v~~Ll~~ga~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a 163 (239)
T 1ycs_B 86 VKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163 (239)
T ss_dssp HHHHHHHTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhh
Confidence 99999999999886 88999999999999999999999999999999998877 999999 78899999999999998
Q ss_pred CCCCC---------CCCCCcHHHHHHHhCC
Q psy6300 159 DQHIV---------DSSGVEPLTLAVEKAN 179 (185)
Q Consensus 159 ~~~~~---------~~~~~t~l~~A~~~~~ 179 (185)
+++.. +..+.++.+++...|.
T Consensus 164 ~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 164 KMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred cccccccceEEEEeccCCCCCCcccccCCC
Confidence 88765 5567888877776664
No 81
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.96 E-value=1.3e-29 Score=161.73 Aligned_cols=132 Identities=20% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
|+++ .+|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 58 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH---------------------AGWTPLHEACNHGHLKV 58 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC---------------------CCCCHHHHHHHcCCHHH
Confidence 5677 7888888888888888888888888888888777665 77888888888888888
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g 157 (185)
+++|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.||+++|+..+..+++.+|.+.+
T Consensus 59 ~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 59 VELLLQHKALVNTT--GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHHTTCCTTCC--CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHHcCCcccCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 88888888877765 677888888888888888888888888888888888888888888777777776665543
No 82
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=3.6e-28 Score=158.22 Aligned_cols=130 Identities=21% Similarity=0.178 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHH
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPV 81 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 81 (185)
+.+++..+..|.||||+ +..|+.+++++|++.|++++.++. .|.+|||+|+..|+.++
T Consensus 26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~ 83 (156)
T 1bd8_A 26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT---------------------SGTSPVHDAARTGFLDT 83 (156)
T ss_dssp CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHH
T ss_pred CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC---------------------CCCCHHHHHHHcCcHHH
Confidence 35788999999999999 999999999999999999988876 89999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhC
Q psy6300 82 MCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156 (185)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~ 156 (185)
+++|++.|.+++.. +..|.||||+|+..|+.+++++|++. ++++..|..|.||||+|+..++.+++++|+++
T Consensus 84 v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 84 LKVLVEHGADVNVP--DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHTTCCSCCC--CTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCc--CCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999998875 78999999999999999999999998 99999999999999999999999999999864
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.96 E-value=2.1e-28 Score=155.97 Aligned_cols=118 Identities=28% Similarity=0.289 Sum_probs=113.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
.+.+|||+|+..|+.+++++|++.+.+++.. |..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 7889999999999999999999999998876 78899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~ 130 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999998876
No 84
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.96 E-value=6.4e-29 Score=158.55 Aligned_cols=119 Identities=24% Similarity=0.274 Sum_probs=113.0
Q ss_pred CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300 64 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143 (185)
Q Consensus 64 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~ 143 (185)
..|.+|||+|+..|+.+++++|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+.
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 38999999999999999999999999999875 7899999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++.+++++|+++|++++.++..|.||+++|+..+..++++
T Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence 99999999999999999999999999999999888777665
No 85
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=1.9e-29 Score=182.81 Aligned_cols=176 Identities=16% Similarity=0.033 Sum_probs=141.0
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCC-------------C-CCc----------------hhh
Q psy6300 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN-------------D-DHR----------------TYL 51 (185)
Q Consensus 2 ~~~~~~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~-------------~-~~~----------------~~~ 51 (185)
|++++..+..|.++++ |+.+++++|+++|++++..... . ... +.+
T Consensus 42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l 116 (327)
T 1sw6_A 42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116 (327)
T ss_dssp SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence 6888899999999987 8999999999999876552110 0 000 111
Q ss_pred HHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCC---HHHHHHHHHcC-CCC
Q psy6300 52 HQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNS---VMACEYLILNG-LKI 127 (185)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~g-~~~ 127 (185)
...+.+.+...+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+ .++++.|++.+ .++
T Consensus 117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~ 194 (327)
T 1sw6_A 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194 (327)
T ss_dssp TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence 12223334435669999999999999999999999999999975 8899999999999998 67778888776 778
Q ss_pred CCCCCCCCcHHHHHHH----hCCHHHHHHHHhCCC---------------------------------------------
Q psy6300 128 NCPDAQGKTPLYLATE----LGHTSQVCLLLKHKA--------------------------------------------- 158 (185)
Q Consensus 128 ~~~~~~~~t~l~~A~~----~~~~~~v~~Ll~~g~--------------------------------------------- 158 (185)
+..|..|.||||+|+. .++.+++++|++.+.
T Consensus 195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~ 274 (327)
T 1sw6_A 195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274 (327)
T ss_dssp GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence 9999999999999999 899999999987743
Q ss_pred CCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 159 DQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 159 ~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+++.++..|.||||+|+..|+.++++
T Consensus 275 ~~n~~d~~G~TpLh~A~~~g~~~~v~ 300 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAARLGNISIVD 300 (327)
T ss_dssp TTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 57888999999999999999999876
No 86
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=5.1e-29 Score=176.56 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=135.9
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCC--CCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGAS--KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG 89 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~ 89 (185)
+.+++|.|+..|+++.++.+++.+.+ ++..+. .|.||||+|+..|+.+++++|++.|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~---------------------~g~T~Lh~A~~~g~~~~v~~Ll~~g 134 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADS---------------------NGNTALHYSVSHANFPVVQQLLDSG 134 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC---------------------CCCCHHHHHHHCCCHHHHHHHHHCC
Confidence 45678889999999999998877655 555555 8999999999999999999999999
Q ss_pred C-CCCCCCCCCCCChHHHHHH-----hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCC
Q psy6300 90 A-SKDWTNPNDDHRTYLHQAV-----IGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIV 163 (185)
Q Consensus 90 ~-~~~~~~~~~~~~~~l~~a~-----~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~ 163 (185)
. +++.. +..|.||||.|+ ..++.+++++|+..|.+.+..+..|.||||+|+..++.+++++|++.|++++.+
T Consensus 135 ~~~~~~~--~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~ 212 (276)
T 4hbd_A 135 VCKVDKQ--NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ 212 (276)
T ss_dssp CCCTTCC--CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCcCCCC--CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence 7 77765 789999999999 668899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhCCccccc
Q psy6300 164 DSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 164 ~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+..|.||||+|+..|+.++++
T Consensus 213 d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 213 DDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CTTSCCHHHHHHHHTCHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHH
Confidence 999999999999999998876
No 87
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.95 E-value=5.7e-28 Score=151.43 Aligned_cols=117 Identities=27% Similarity=0.303 Sum_probs=108.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
.+.++||+|+..|+.+++++|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 7889999999999999999999999998875 78999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183 (185)
Q Consensus 145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~ 183 (185)
++.+++++|+++|++++.++..|.||+++|...+..+++
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence 999999999999999999999999999999665554443
No 88
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=8.4e-28 Score=172.13 Aligned_cols=146 Identities=23% Similarity=0.188 Sum_probs=122.9
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCHHHHHHHHHc
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNLPVMCHALAL 88 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~ 88 (185)
..++|+.|+..|+++.++.|++.|++++...... ..+..|.||||+|+.. ++.+++++|+++
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~---------------~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ 215 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGP---------------DAQAPEELVLHLAVKVANQASLPLVDFIIQN 215 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECS---------------SSCSCEECHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCc---------------ccCCCCccHHHHHHHhcccCcHHHHHHHHhc
Confidence 4578999999999999999999999887631000 0112899999999987 899999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV 168 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 168 (185)
|.+++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++ .|.
T Consensus 216 gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~ 287 (301)
T 2b0o_E 216 GGHLDAK--AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFA 287 (301)
T ss_dssp SSCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTS
T ss_pred CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCC
Confidence 9999876 88999999999999999999999999999999999999999999999999999999999876 478
Q ss_pred cHHHHHHHhCCc
Q psy6300 169 EPLTLAVEKANA 180 (185)
Q Consensus 169 t~l~~A~~~~~~ 180 (185)
||||+|+..|+.
T Consensus 288 tpLh~A~~~g~~ 299 (301)
T 2b0o_E 288 FPLHVDYSWVIS 299 (301)
T ss_dssp SCCC--------
T ss_pred ChhHHHHhcCCc
Confidence 999999998864
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=2e-27 Score=149.16 Aligned_cols=118 Identities=31% Similarity=0.392 Sum_probs=112.9
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
+|.+|||+|+..|+.+++++|++.+.+++.. +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence 4789999999999999999999999988875 78899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 145 ~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++.+++++|+++|++++.++..|.||+++|+..++.++++
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 118 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHH
Confidence 9999999999999999999999999999999999998876
No 90
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.6e-28 Score=167.79 Aligned_cols=137 Identities=27% Similarity=0.329 Sum_probs=117.1
Q ss_pred HHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q psy6300 28 MCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQ 107 (185)
Q Consensus 28 ~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~ 107 (185)
++.|++.|++++..+.. +..+.++||+|+..|+.+++++|++.|.+++.. |..|.||||+
T Consensus 1 v~~ll~~~~~~~~~~~~------------------~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~ 60 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRA------------------RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP--NEEGITALHN 60 (229)
T ss_dssp ---------CCCCCCCT------------------TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC--CTTSCCHHHH
T ss_pred CeehhccCCCCcccccc------------------ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC--CCCCCCHHHH
Confidence 35678888877665432 227889999999999999999999999999875 8899999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHhCCccccc
Q psy6300 108 AVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD-SSGVEPLTLA--VEKANADIVT 184 (185)
Q Consensus 108 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~l~~A--~~~~~~~~~~ 184 (185)
|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++.++ ..|.|||++| +..|+.++++
T Consensus 61 A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~ 140 (229)
T 2vge_A 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140 (229)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 6999999999 8888888775
No 91
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=8.4e-28 Score=156.65 Aligned_cols=117 Identities=24% Similarity=0.273 Sum_probs=112.0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHHHH
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATE 143 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t-~l~~A~~ 143 (185)
.+.+|||+|+..|+.+++++|+++|.+++.. +..|.||||+|+ .|+.+++++|++.|++++..|..|.| |||+|+.
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence 8899999999999999999999999998875 789999999985 89999999999999999999999999 9999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus 88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~ 128 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128 (156)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999998875
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.95 E-value=6.1e-28 Score=165.87 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=112.7
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
+..|.||||.|+..|+.+++++|++.|++++..+. .|.+|||+|+..|+.+++++|++.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~ 128 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK---------------------AGSTALYWACHGGHKDIVEMLFTQ 128 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHTTS
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCC---------------------CCCCHHHHHHHcCCHHHHHHHHcC
Confidence 45678999999999999999999999999888776 899999999999999999999998
Q ss_pred -CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300 89 -GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG 167 (185)
Q Consensus 89 -~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 167 (185)
+.+++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.|||++|+..+..++++.|++.|++.+..+..+
T Consensus 129 ~g~~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 129 PNIELNQQ--NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp TTCCCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred CCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 8888876 8899999999999999999999999999999999999999999999999999999999998887665543
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.95 E-value=2.5e-27 Score=165.05 Aligned_cols=134 Identities=18% Similarity=0.128 Sum_probs=119.2
Q ss_pred CCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcC
Q psy6300 10 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALG 89 (185)
Q Consensus 10 ~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~ 89 (185)
..|.||||.|+..|+.+++++|++ |++++.++. .|.||||+|+..|+.+++++|+++|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---------------------~g~t~L~~A~~~g~~~~v~~Ll~~g 100 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---------------------NGRTALLFVAGLGSDKCVRLLAEAG 100 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT---------------------TSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC---------------------CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 368899999999999999999999 888888776 8999999999999999999999999
Q ss_pred CCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300 90 ASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV 168 (185)
Q Consensus 90 ~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 168 (185)
.+++.. + ..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..+. ...+.
T Consensus 101 a~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~ 161 (244)
T 3ui2_A 101 ADLDHR--DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKG 161 (244)
T ss_dssp CCTTCC--CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCS
T ss_pred CCCCcC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCC
Confidence 999875 5 679999999999999999999999999999999999999999986322 24578
Q ss_pred cHHHHHHHhCCccccc
Q psy6300 169 EPLTLAVEKANADIVT 184 (185)
Q Consensus 169 t~l~~A~~~~~~~~~~ 184 (185)
|||++|+..|+.++++
T Consensus 162 ~~l~~a~~~g~~~iv~ 177 (244)
T 3ui2_A 162 NPMQFGRRIGLEKVIN 177 (244)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcChHHHHH
Confidence 8999999998887765
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.95 E-value=2.8e-27 Score=158.08 Aligned_cols=135 Identities=19% Similarity=0.126 Sum_probs=116.6
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
+..|.||||.|+..|+.+++++|++ |++++..+. .|.||||+|+..|+.+++++|+++
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~ 98 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---------------------NGRTALLFVAGLGSDKCVRLLAEA 98 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT---------------------TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC---------------------CCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3468899999999999999999998 888887776 888999999999999999999999
Q ss_pred CCCCCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Q psy6300 89 GASKDWTNPN-DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG 167 (185)
Q Consensus 89 ~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 167 (185)
|.+++.. + ..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++. ..+
T Consensus 99 ga~~~~~--~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~ 159 (183)
T 3deo_A 99 GADLDHR--DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPK 159 (183)
T ss_dssp TCCTTCC--CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCC
T ss_pred CCCCCcC--CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------ccc
Confidence 9988875 5 7799999999999999999999999999999999999999999875321 345
Q ss_pred CcHHHHHHHhCCccccc
Q psy6300 168 VEPLTLAVEKANADIVT 184 (185)
Q Consensus 168 ~t~l~~A~~~~~~~~~~ 184 (185)
.+|+++|+..|+.++++
T Consensus 160 ~~~l~~a~~~~~~~i~~ 176 (183)
T 3deo_A 160 GNPMQFGRRIGLEKVIN 176 (183)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcCHHHHHH
Confidence 78999999988877765
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.94 E-value=6.5e-26 Score=141.99 Aligned_cols=112 Identities=19% Similarity=0.120 Sum_probs=103.7
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
+..|.||||+|+..|+.+++++|++.|.+++.++. .|.+|||+|+..++.+++++|++.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~ 62 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE---------------------GGRKPLHYAADCGQLEILEFLLLK 62 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT---------------------TSSCHHHHHHHTTCHHHHHHHHTT
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC---------------------CCCcHHHHHHHcCCHHHHHHHHHc
Confidence 56789999999999999999999999999988877 899999999999999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~ 143 (185)
+.+++.. |..|.||||+|+..++.+++++|++.|++++..|..|.||||+|..
T Consensus 63 g~~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 63 GADINAP--DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred CCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 9998876 8899999999999999999999999999999999999999999943
No 96
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=6.6e-26 Score=160.62 Aligned_cols=177 Identities=21% Similarity=0.196 Sum_probs=136.4
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCC-----chhhHHhhcc-----CCcccCCCchhHHHHHHhcC
Q psy6300 8 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH-----RTYLHQAVIG-----VNDVSDLSPELLLYRASTVH 77 (185)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~l~~a~~~~ 77 (185)
.|.++.++++.+...|+..+.+++...-.......+.... ..+....... ...........+|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 6778999999999999987766654332221111111111 1111111111 11111113346799999999
Q ss_pred CHHHHHHHHHcCCCCCCC----CCCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHH
Q psy6300 78 NLPVMCHALALGASKDWT----NPNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV 150 (185)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~----~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v 150 (185)
+.+.+..++..|.+++.. ..+..|.||||+|+.. ++.+++++|++.|++++..|..|.||||+|+..++.+++
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v 221 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999886532 2367899999999999 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 151 CLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 151 ~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
++|+++|++++.++..|.|||++|+..|+.++++
T Consensus 222 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 255 (278)
T 1dcq_A 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255 (278)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999998876
No 97
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=6.1e-28 Score=161.50 Aligned_cols=136 Identities=11% Similarity=0.041 Sum_probs=118.9
Q ss_pred CCCCC-CCCchHHHHHHhcCCh----HHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCC-
Q psy6300 5 DDVSD-LSPELLLYRASTVHNL----PVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN- 78 (185)
Q Consensus 5 ~~~~~-~~g~~~l~~A~~~g~~----~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~- 78 (185)
++..+ ..|.||||+|+..|+. +++++|++.|++++.++. .|.||||+|+..++
T Consensus 30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~---------------------~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK---------------------EGTTLFFPLFQGGGN 88 (186)
T ss_dssp SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT---------------------TCCCTHHHHHHHCTT
T ss_pred cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC---------------------CCCcHHHHHHHcCCc
Confidence 44445 6699999999999975 589999999999999887 99999999999886
Q ss_pred -----HHHHHHHHHcCCCCCCCCCCCCCC-hHHHHHHhcC-----CHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHhCC
Q psy6300 79 -----LPVMCHALALGASKDWTNPNDDHR-TYLHQAVIGN-----SVMACEYLIL-NGLKINCPDAQGKTPLYLATELGH 146 (185)
Q Consensus 79 -----~~~~~~ll~~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~A~~~~~ 146 (185)
.+++++|++.|++++.+ |..|. ||||+|+..+ ..+++++|++ .|++++..|..|.||||+|+..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~ 166 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITAL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHCCCCCCcc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCC
Confidence 57899999999999986 88999 9999999854 3568999999 999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCC
Q psy6300 147 TSQVCLLLKHKADQHIV 163 (185)
Q Consensus 147 ~~~v~~Ll~~g~~~~~~ 163 (185)
.+++++|.++....+.+
T Consensus 167 ~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 167 PIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999998765444443
No 98
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=6.1e-26 Score=172.69 Aligned_cols=147 Identities=20% Similarity=0.157 Sum_probs=117.2
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHh---cCCHHHHHHHHHc
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST---VHNLPVMCHALAL 88 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~---~~~~~~~~~ll~~ 88 (185)
..+.|+.|+..|+.++++.|++.|++++...... ..+..|.||||+|+. .|+.+++++|+++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~---------------~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ 196 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGP---------------DAQAPEELVLHLAVKVANQASLPLVDFIIQN 196 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCS---------------SSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCc---------------ccccccchHHHHHHHhcccccHHHHHHHHHc
Confidence 3468999999999999999999999988662100 011289999999965 8999999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGV 168 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 168 (185)
|++++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.......
T Consensus 197 ga~vn~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~~ 274 (497)
T 3lvq_E 197 GGHLDAK--AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 274 (497)
T ss_dssp SCCTTCC--CSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------
T ss_pred CCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcceee
Confidence 9999986 88999999999999999999999999999999999999999999999999999999999999987655555
Q ss_pred cHHHHHH
Q psy6300 169 EPLTLAV 175 (185)
Q Consensus 169 t~l~~A~ 175 (185)
++|..+.
T Consensus 275 ~~~~~~~ 281 (497)
T 3lvq_E 275 YSWVIST 281 (497)
T ss_dssp -------
T ss_pred ccccCCC
Confidence 5555443
No 99
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.94 E-value=4.3e-26 Score=166.91 Aligned_cols=152 Identities=27% Similarity=0.344 Sum_probs=118.8
Q ss_pred CCCCCCCchHHHHHHhc-CChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHH
Q psy6300 6 DVSDLSPELLLYRASTV-HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH 84 (185)
Q Consensus 6 ~~~~~~g~~~l~~A~~~-g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 84 (185)
+..+..+.++||.|+.. |+++++++|++.|++++..+... .|.+|||+|+..|+.+++++
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~-------------------~g~TpLh~Aa~~g~~~iv~~ 253 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQ-------------------DNATPLIQATAANSLLACEF 253 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTT-------------------TCCCHHHHHHHTTCHHHHHH
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcccccc-------------------CCCCHHHHHHHCCCHHHHHH
Confidence 45556678899999999 99999999999999998876211 88899999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC---CC
Q psy6300 85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD---QH 161 (185)
Q Consensus 85 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~---~~ 161 (185)
|+++|.+++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.+.. ..
T Consensus 254 LL~~Gadvn~~--d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~ 331 (368)
T 3jue_A 254 LLQNGANVNQA--DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331 (368)
T ss_dssp HHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------
T ss_pred HHHcCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence 99999999975 88999999999999999999999999999999999999999999999999999999977633 33
Q ss_pred CCCCCCCcHHHHHHHhC
Q psy6300 162 IVDSSGVEPLTLAVEKA 178 (185)
Q Consensus 162 ~~~~~~~t~l~~A~~~~ 178 (185)
..+..+.|+++++....
T Consensus 332 ~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 332 QGQAGDETYLDIFRDFS 348 (368)
T ss_dssp -----------------
T ss_pred ccCCCCCCHHHHHHHHH
Confidence 45567788888776543
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.94 E-value=6.2e-26 Score=151.50 Aligned_cols=116 Identities=22% Similarity=0.170 Sum_probs=109.6
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE 143 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~ 143 (185)
.|.+|||+|+..|+.++++.|++ +.+++.. |..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 78899999999999999999999 8888875 8899999999999999999999999999999888 889999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~ 183 (185)
.++.+++++|+++|++++.++..|.|||++|+..++.+..
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~ 159 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 159 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCccc
Confidence 9999999999999999999999999999999998876654
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.93 E-value=2.3e-26 Score=158.02 Aligned_cols=118 Identities=22% Similarity=0.164 Sum_probs=112.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHH
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATE 143 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~A~~ 143 (185)
.|.+|||+|+..|+.+++++|++.+.+++.. +..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 6789999999999999999999999998875 78999999999999999999999998 99999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++.+++++|+++|++++.++..|.|||++|+..++.++++
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~ 190 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLK 190 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHH
Confidence 99999999999999999999999999999999998887765
No 102
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.4e-28 Score=180.69 Aligned_cols=148 Identities=11% Similarity=0.014 Sum_probs=122.5
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHc
Q psy6300 9 DLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALAL 88 (185)
Q Consensus 9 ~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 88 (185)
+..+.||||.|++.|+.+++++|++.|+.....+. .+..+.+|||+|+..|+.+++++|+++
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~------------------~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ 150 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV------------------IQAENYQAFRLAAENGHLHVLNRLCEL 150 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--------------------CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHH------------------hccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 44577999999999999999999999873221110 011677899999999999999999999
Q ss_pred CCCC---CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-HhCCHHHHHHHHhCCCCCCC
Q psy6300 89 GASK---DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC--PDAQGKTPLYLAT-ELGHTSQVCLLLKHKADQHI 162 (185)
Q Consensus 89 ~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~--~~~~~~t~l~~A~-~~~~~~~v~~Ll~~g~~~~~ 162 (185)
|++. +.. ..+.||||.|+..|+.+++++|++.|++++. .|..|.||||+|+ ..|+.++|++|++.|++
T Consensus 151 gad~~~~~i~---~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--- 224 (376)
T 2aja_A 151 APTEIMAMIQ---AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--- 224 (376)
T ss_dssp CTTTHHHHHS---HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---
T ss_pred CCCccccccC---CCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---
Confidence 9752 222 2228999999999999999999999999877 7888999999999 99999999999987742
Q ss_pred CCCCCCcHHHHHHHhCCccccc
Q psy6300 163 VDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 163 ~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+.||+++|+..|+.++++
T Consensus 225 ----~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 225 ----LAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp ----HHHHHHCTTTTTTTTHHH
T ss_pred ----cchHHHHHHHCCCHHHHH
Confidence 789999999999999876
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=155.23 Aligned_cols=176 Identities=20% Similarity=0.188 Sum_probs=134.8
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHHcCCCCC-CCCCCCCCc-----hhhHHhhccCC-cccCCCchhHHHHHHhcCCHH
Q psy6300 8 SDLSPELLLYRASTVHNLPVMCHALALGASKD-WTNPNDDHR-----TYLHQAVIGVN-DVSDLSPELLLYRASTVHNLP 80 (185)
Q Consensus 8 ~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~-~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~ 80 (185)
.|.+..+.+..+...|+. .++.+.+...... ...+..... .++........ ........++|+.|+..|+.+
T Consensus 87 lD~w~~~~l~~~~~~GN~-~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~A~~~g~~~ 165 (301)
T 2b0o_E 87 LDLLGPSELLLALNMGNT-SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLL 165 (301)
T ss_dssp TSCCCHHHHHHHHHCCHH-HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC-CHHHHHHHHHTTCHH
T ss_pred cCCCCHHHHHHHHHcCCH-HHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcccCchHHHHhhhhhccCHH
Confidence 455677788888888877 4444455443221 111111111 22222222211 122224567899999999999
Q ss_pred HHHHHHHcCCCCCCCC----CCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q psy6300 81 VMCHALALGASKDWTN----PNDDHRTYLHQAVIG---NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153 (185)
Q Consensus 81 ~~~~ll~~~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~L 153 (185)
.+..++..+.+++... .+..|.||||+|+.. ++.+++++|+++|++++..|..|.||||+|+..++.+++++|
T Consensus 166 ~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L 245 (301)
T 2b0o_E 166 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245 (301)
T ss_dssp HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999988621 267899999999987 899999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 154 l~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
+++|++++.++..|.|||++|+..++.++++
T Consensus 246 l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~ 276 (301)
T 2b0o_E 246 LKGRALVGTVNEAGETALDIARKKHHKECEE 276 (301)
T ss_dssp HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999998876
No 104
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=8.1e-25 Score=152.37 Aligned_cols=114 Identities=22% Similarity=0.186 Sum_probs=107.5
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD-AQGKTPLYLATE 143 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~~A~~ 143 (185)
.|.||||+|+..|+.++++.|++ +.+++.. +..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 78899999999999999999999 8888876 8899999999999999999999999999999988 789999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCcc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~ 181 (185)
.++.+++++|+++|++++.++..|.|||++|+..++..
T Consensus 121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~ 158 (244)
T 3ui2_A 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158 (244)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhcc
Confidence 99999999999999999999999999999999876543
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.92 E-value=4.7e-24 Score=151.12 Aligned_cols=132 Identities=19% Similarity=0.146 Sum_probs=117.2
Q ss_pred CchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhc---CCHHHHHHHHHc
Q psy6300 12 PELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTV---HNLPVMCHALAL 88 (185)
Q Consensus 12 g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~ 88 (185)
..++|+.|+..|+.+.++.+++.|.++...... ...+..|.||||+|+.. |+.+++++|+++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l---------------~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ 194 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPL---------------ANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCC---------------SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccc---------------cccccCCCCcchHHHHhcccchHHHHHHHHHC
Confidence 356899999999999999999999986543200 01122899999999999 899999999999
Q ss_pred CCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q psy6300 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~ 160 (185)
|.+++.+ |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++.
T Consensus 195 ga~in~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 195 SGNLDKQ--TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CSCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999976 889999999999999999999999999999999999999999999999999999999998764
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.92 E-value=1.8e-24 Score=158.33 Aligned_cols=120 Identities=51% Similarity=0.749 Sum_probs=112.9
Q ss_pred CchhHHHHHHhc-CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300 65 SPELLLYRASTV-HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143 (185)
Q Consensus 65 ~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~ 143 (185)
.+.++||.|+.. ++.++++.|++.|.+++....+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456799999999 9999999999999999986222789999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
.++.+++++|+++|++++.++..|.|||++|+..++.++++
T Consensus 278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~ 318 (368)
T 3jue_A 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318 (368)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999998876
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.92 E-value=4.6e-24 Score=127.13 Aligned_cols=93 Identities=31% Similarity=0.341 Sum_probs=85.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
+|.||||+|+..|+.+++++|++.+.+++.+ |..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 3679999999999999999999999998876 78899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCC
Q psy6300 145 GHTSQVCLLLKHKAD 159 (185)
Q Consensus 145 ~~~~~v~~Ll~~g~~ 159 (185)
++.+++++|++.|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999875
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=3.5e-23 Score=157.55 Aligned_cols=120 Identities=24% Similarity=0.251 Sum_probs=110.6
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCC----CCCCCChHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCcH
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTN----PNDDHRTYLHQAVI---GNSVMACEYLILNGLKINCPDAQGKTP 137 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~~~~l~~a~~---~~~~~~~~~Ll~~g~~~~~~~~~~~t~ 137 (185)
...+.||.|+..|+.+.++.|++.|.+++... .+..|.||||+||. .|+.+++++|++.|+++|..|..|.||
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 34477999999999999999999999987541 25689999999966 899999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHhCCccccc
Q psy6300 138 LYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184 (185)
Q Consensus 138 l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~~~ 184 (185)
||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~ 257 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999998876
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.91 E-value=2.5e-24 Score=133.15 Aligned_cols=106 Identities=24% Similarity=0.201 Sum_probs=99.0
Q ss_pred CCchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy6300 64 LSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143 (185)
Q Consensus 64 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~ 143 (185)
..|.+|||+|+..|+.+++++|++.+.+++.. +..|.||||.|+..++.+++++|++.|++++..|..|.||||+|+.
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 38999999999999999999999999998875 7899999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q psy6300 144 LGHTSQVCLLLKHKADQHIVDSSGVEPL 171 (185)
Q Consensus 144 ~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 171 (185)
.++.+++++|+++|++++.++..+.+|-
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999998884
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.90 E-value=4.5e-23 Score=122.78 Aligned_cols=93 Identities=23% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCC
Q psy6300 11 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGA 90 (185)
Q Consensus 11 ~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 90 (185)
+|.||||+|+..|+.+++++|++.|++++.++. .|.||||+|+..|+.+++++|+++|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga 59 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---------------------NGRTPLHLAARNGHLEVVKLLLEAGA 59 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---------------------CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 489999999999999999999999999988877 89999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK 126 (185)
Q Consensus 91 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~ 126 (185)
+++.+ |..|.||||+|+..|+.+++++|++.|++
T Consensus 60 ~~~~~--d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 60 DVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99876 88999999999999999999999999874
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.90 E-value=1.1e-23 Score=130.23 Aligned_cols=109 Identities=17% Similarity=0.037 Sum_probs=100.3
Q ss_pred CCCCCCchHHHHHHhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHH
Q psy6300 7 VSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL 86 (185)
Q Consensus 7 ~~~~~g~~~l~~A~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 86 (185)
.+|..|.||||+|+..|+.+++++|++.|++++..+. .|.+|||+|+..++.+++++|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~---------------------~g~t~L~~A~~~~~~~~~~~Ll 62 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK---------------------DGNTPLHLAAKNGHAEIVKLLL 62 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS---------------------SSCCTTHHHHTTTCHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------------------CCCCHHHHHHHcCcHHHHHHHH
Confidence 5788999999999999999999999999999888776 8999999999999999999999
Q ss_pred HcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q psy6300 87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPL 138 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l 138 (185)
+.|.+++.. +..|.||||+|+..++.+++++|++.|++++..+..+.+|-
T Consensus 63 ~~g~~~~~~--d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 63 AKGADVNAR--SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCCTTCC--CTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HcCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 999998875 78899999999999999999999999999999998888873
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.88 E-value=2e-24 Score=158.62 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=115.2
Q ss_pred chHHHHHHh-cCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHHcCCC
Q psy6300 13 ELLLYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91 (185)
Q Consensus 13 ~~~l~~A~~-~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~ 91 (185)
.+.+++|+. .++.++++++++.|. .+.||||+|+..|+.+++++|++.+..
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~----------------------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~ 117 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGI----------------------------KSEVICFVAAITGCSSALDTLCLLLTS 117 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTC----------------------------CHHHHHHHHHHHCCHHHHHHHTTC--C
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC----------------------------CcCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 345666665 466777777777664 556999999999999999999998873
Q ss_pred CCCC-CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC--CCC
Q psy6300 92 KDWT-NPNDDHRTYLHQAVIGNSVMACEYLILNGLKI---NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI--VDS 165 (185)
Q Consensus 92 ~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~---~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~~~ 165 (185)
.... ..+..+.||||.|+..|+.+++++|++.|+++ +..+.. .||||+|+..|+.+++++|+++|++++. .+.
T Consensus 118 ~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~ 196 (376)
T 2aja_A 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQA 196 (376)
T ss_dssp CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCC
Confidence 3211 12456889999999999999999999999752 222222 8999999999999999999999999877 788
Q ss_pred CCCcHHHHHH-HhCCcccccC
Q psy6300 166 SGVEPLTLAV-EKANADIVTL 185 (185)
Q Consensus 166 ~~~t~l~~A~-~~~~~~~~~~ 185 (185)
.|.|||++|+ ..|+.+++++
T Consensus 197 ~g~TpL~~Aa~~~G~~eiv~~ 217 (376)
T 2aja_A 197 ENYYAFRWAAVGRGHHNVINF 217 (376)
T ss_dssp HHHHHHHHHHSTTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 8999999999 9999999863
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.86 E-value=9e-22 Score=120.72 Aligned_cols=87 Identities=29% Similarity=0.388 Sum_probs=59.4
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHh
Q psy6300 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177 (185)
Q Consensus 98 ~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 177 (185)
+.+|.|+||.|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence 45666677777777777777777766666666666667777777777777777777777777666666677777777776
Q ss_pred CCccccc
Q psy6300 178 ANADIVT 184 (185)
Q Consensus 178 ~~~~~~~ 184 (185)
|+.++++
T Consensus 101 ~~~~~~~ 107 (110)
T 2zgd_A 101 GNEDLAE 107 (110)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 6666654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.84 E-value=6.2e-20 Score=112.47 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=83.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHh
Q psy6300 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144 (185)
Q Consensus 65 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~ 144 (185)
.|.++||+|+..|+.+++++|++.+.+++.. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence 8999999999999999999999999998876 78999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHH
Q psy6300 145 GHTSQVCLL 153 (185)
Q Consensus 145 ~~~~~v~~L 153 (185)
++.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 999999987
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.41 E-value=2.6 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=16.3
Q ss_pred HHHHHHhcCChHHHHHHHH
Q psy6300 15 LLYRASTVHNLPVMCHALA 33 (185)
Q Consensus 15 ~l~~A~~~g~~~~~~~ll~ 33 (185)
.++.||..|+++.++.|..
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4789999999999998754
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.94 E-value=1.1e+02 Score=19.76 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=26.9
Q ss_pred hHHHHHHhcCCHH-HHHHHHHcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Q psy6300 103 TYLHQAVIGNSVM-ACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155 (185)
Q Consensus 103 ~~l~~a~~~~~~~-~~~~Ll~~g~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~ 155 (185)
..++.+...|+.+ +++.|.+.|-- .-+...|..++..+++.-+++
T Consensus 94 ~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 94 SMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHH
Confidence 4556666666665 56666554321 125566667788888876653
No 117
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.47 E-value=2e+02 Score=21.64 Aligned_cols=61 Identities=8% Similarity=-0.088 Sum_probs=41.2
Q ss_pred HhcCChHHHHHHHHcCCCCCCCCCCCCCchhhHHhhccCCcccCCCchhHHHHHHhcCCHHHHHHHHH
Q psy6300 20 STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALA 87 (185)
Q Consensus 20 ~~~g~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 87 (185)
+..|+...|+.-+..|.++...-. ...-...+.... ...|.|.+|+|+++.+.+++-.|+.
T Consensus 30 v~e~~~~~ve~y~~~gg~~~r~lt------~~e~~lln~~~a-f~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 30 VVEGDLAAIEAYKSSGGDIARQLT------ADEVRLLNRPSA-FDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCCCC------HHHHHHHCCTTT-CCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCChhHHHHHHhcCCchhcccC------HHHHHHhCCCcc-cccCchhhhhhhhhhhhhHHHHhhh
Confidence 356899999988888887754321 111111222222 3389999999999999888888775
No 118
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.46 E-value=2.2e+02 Score=21.57 Aligned_cols=48 Identities=4% Similarity=-0.072 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHH----HHcCCCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q psy6300 69 LLYRASTVHNLPVMCHA----LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL 120 (185)
Q Consensus 69 ~l~~a~~~~~~~~~~~l----l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L 120 (185)
.+...++.|..+....+ .+.|..++.. .-.+.+...+..|..+-+..+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~----ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEP----ELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHhhCCCHHHHHHH
Confidence 34445566766544333 3444443321 112234455566666544333
Done!