RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6300
(185 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 72.0 bits (177), Expect = 1e-16
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L+ A++ +L V+ L GA D ++D RT LH A + + L+ G +N
Sbjct: 10 PLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D G TPL+LA G+ V LLLKH AD + D G PL LA + + ++V L
Sbjct: 68 ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124
Score = 61.6 bits (150), Expect = 9e-13
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
++D RT LH A + + L+ NG +N D G+TPL+LA + GH V LLL+
Sbjct: 4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + D G PL LA N D+V L
Sbjct: 64 ADVNARDKDGNTPLHLAARNGNLDVVKL 91
Score = 50.5 bits (121), Expect = 2e-08
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
N D G+TPL+LA GH V LLL++ AD + D+ G PL LA + + +IV L
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58
Score = 48.5 bits (116), Expect = 9e-08
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 15 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS 74
L+ A++ +L V+ L GA D ++D RT LH A
Sbjct: 10 PLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKN----------------- 50
Query: 75 TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG 134
+L ++ L GA + + D T LH A ++ + L+ +G +N D G
Sbjct: 51 --GHLEIVKLLLEKGADVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDG 106
Query: 135 KTPLYLATELGHTSQVCLLL 154
+TPL+LA + GH V LLL
Sbjct: 107 RTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 55.3 bits (134), Expect = 1e-10
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ A+ NL ++ L GA + D T LH A ++ + L+ +G +N
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
D G T L+LA G+ V LLL+H AD ++ D
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 52.3 bits (126), Expect = 1e-09
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
LH A ++ + L+ G +N D T L+LA G+ V LLL+H AD + D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 165 SSGVEPLTLAVEKANADIVTL 185
G L LA N +IV L
Sbjct: 59 KDGNTALHLAARNGNLEIVKL 79
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 52.6 bits (126), Expect = 2e-08
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 106 HQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDS 165
A G++V A L+ G NC D G+TPL++A GH V +LL+ AD ++D
Sbjct: 88 QLAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
Query: 166 SGVEPLTLAVEKANADIVTL 185
G PL LA E ++V L
Sbjct: 147 DGKTPLELAEENGFREVVQL 166
Score = 33.3 bits (76), Expect = 0.061
Identities = 23/69 (33%), Positives = 28/69 (40%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D RT LH A V L+ G D GKTPL LA E G V LL +H
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQC 173
Query: 160 QHIVDSSGV 168
+ ++
Sbjct: 174 HFELGANAK 182
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 50.4 bits (121), Expect = 1e-07
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 88 LGASKDWTNPNDDHRTYLHQAVIGNSVMAC--EYLILNGLKINCPDAQGKTPLYLATELG 145
+ A D + T LH G+S L++ G+ IN + G+TPL+ A
Sbjct: 209 IRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN 268
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
+ L+ AD + V S G PL+L V N V
Sbjct: 269 NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVR 307
Score = 34.6 bits (80), Expect = 0.022
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 120 LILNGLKINCPDAQGKTPL--YLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
LI G +N D G+TPL YL+ + + LLL+ AD + +D G+ PL + ++
Sbjct: 103 LIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162
Query: 178 ANADIVTL 185
NA++ L
Sbjct: 163 RNANVELL 170
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 46.1 bits (110), Expect = 1e-07
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 101 HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
RT LH+A I + +YL+ G+ IN D G T L++A E G+ + LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 33.4 bits (77), Expect = 0.007
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
T L+ A G V LL+ D + D G L +A E N +++
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVL 50
Score = 26.0 bits (58), Expect = 2.4
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI 121
L++A+ L ++ + L G D ++D T LH A ++ + L+
Sbjct: 4 ALHKAAISGRLELVKYLLEKGV--DINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 48.5 bits (116), Expect = 4e-07
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
YL+ G+ IN D G TPL+ A + V LL A+ ++V+ G PL +A+
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN 235
Query: 178 ANADIVTL 185
N +I L
Sbjct: 236 NNKEIFKL 243
Score = 39.3 bits (92), Expect = 6e-04
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 25/158 (15%)
Query: 46 DHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYL 105
D+ ++ + + S L + + ++ L GA+ + P+++ T L
Sbjct: 56 DNGADINSST---KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN--APDNNGITPL 110
Query: 106 HQAVIG--NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS--------------- 148
A+ NS EYL+ NG +N ++ G+ L+L E
Sbjct: 111 LYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170
Query: 149 ---QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
+V LL + +I D G PL AV N + V
Sbjct: 171 AKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208
Score = 26.9 bits (60), Expect = 7.0
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 51 LHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI 110
LH + + +LL+ + ++ + + L+ G + + T LH AV
Sbjct: 145 LHLYLESNKIDLKIL-KLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGF--TPLHYAVY 201
Query: 111 GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD-QHIVD 164
N+ +YL+ G N + G TPL++A + LLL + + I++
Sbjct: 202 NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 47.3 bits (112), Expect = 1e-06
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA---QGKTPLYLATELG 145
GA D P D + LH AV V A E L+ G + D G TPL+LAT L
Sbjct: 58 GAIPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKFAD--DVFYKDGMTPLHLATILK 113
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ LL+ AD I ++ PL LAV + + L
Sbjct: 114 KLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153
Score = 46.9 bits (111), Expect = 2e-06
Identities = 48/167 (28%), Positives = 67/167 (40%), Gaps = 20/167 (11%)
Query: 35 GASKDWTNPNDDHRTYLHQAVIG---------------VNDVSDLSPELLLYRASTVHNL 79
GA D P D + LH AV +DV L+ A+ + L
Sbjct: 58 GAIPDVKYP--DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL 115
Query: 80 PVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLY 139
+M +A GA D PN D + LH AV+ + E LI + ++ D G TPL
Sbjct: 116 DIMKLLIARGADPDI--PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLI 173
Query: 140 LATELGHTSQVCLLLKHKADQHIVDSSG-VEPLTLAVEKANADIVTL 185
+A G + +LL A+ +G V L A+E DIV L
Sbjct: 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220
Score = 27.3 bits (60), Expect = 5.1
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 101 HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
+ L A++ + L+ G+ N G +P+ LA + + + LL+KH A
Sbjct: 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP 61
Query: 161 HIVDSSGVE-PLTLAVEKAN 179
V +E L AVE+ +
Sbjct: 62 D-VKYPDIESELHDAVEEGD 80
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 43.3 bits (101), Expect = 2e-05
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA-----TELGHTSQVCLLLKH 156
R LH A + L+ +G +N DA G TPL+LA G+ LLL+
Sbjct: 74 RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133
Query: 157 KADQHIV---DSSGVEPLTLAVEKANADIVTL 185
AD + D G PL A +ADIV L
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165
Score = 37.1 bits (85), Expect = 0.003
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 86 LALGASKDWTNP-NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
L GA D N ++D T LH A + E L+ G N ++ G T L A +
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN 190
Query: 145 GHTSQVCLLLKHK 157
G V LLL
Sbjct: 191 GRIELVKLLLDKG 203
Score = 36.0 bits (82), Expect = 0.006
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 98 NDDHRTYLHQAVIGNSVMAC-----EYLILNGLK---INCPDAQGKTPLYLATELGHTSQ 149
+ D T LH A + + + L+ G N D G TPL+ A G
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162
Query: 150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V LLL+ AD + +S GV L A + ++V L
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 43.3 bits (102), Expect = 3e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 95 TNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
+PN L A GN+ + E L+ L + D++G+TPL++A G+ V +LL
Sbjct: 521 DDPNMASNL-LTVASTGNAAL-LEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578
Query: 155 KHKADQHIVDSSG 167
KH + HI D++G
Sbjct: 579 KHACNVHIRDANG 591
Score = 28.7 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 112 NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
N + A + L+ GL ++ D QG T L +A H V LL+ + AD
Sbjct: 633 NDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 42.7 bits (100), Expect = 4e-05
Identities = 24/93 (25%), Positives = 44/93 (47%)
Query: 91 SKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV 150
D N + ++ + + + + ++ E L+ G +N D TP++ A E G+ V
Sbjct: 135 HYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMV 194
Query: 151 CLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
LLL + AD +I+ + L AV+ N D +
Sbjct: 195 NLLLSYGADVNIIALDDLSVLECAVDSKNIDTI 227
Score = 30.8 bits (69), Expect = 0.39
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 96 NPNDDHR-TYLHQAVIGNSV-MACEYLILNGLKINCPDAQGKTPLYLATELGH-TSQVCL 152
N DD + T LH A S+ L+ G +N + +G+TPLYL + G+ T +
Sbjct: 267 NSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRT 326
Query: 153 LLKHKADQHIVDSSGVEPLTLA 174
L+ AD + D + PL A
Sbjct: 327 LIMLGADVNAADRLYITPLHQA 348
Score = 28.5 bits (63), Expect = 2.2
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 16 LYRASTV-HNLPVMCHALALGA---SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPEL--L 69
L++AST+ N ++ L LGA ++D+ + H + V+ +N + D ++ L
Sbjct: 345 LHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404
Query: 70 LYRASTVHNL------PVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVM-ACEYLIL 122
+ T + P M + + + N D T LH A N + E L+
Sbjct: 405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464
Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
NG +N + Q + PL +A L + V +LL + A+
Sbjct: 465 NGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGAE 499
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 40.3 bits (94), Expect = 2e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
G+ +N DA+ KT L+ A + G + +L ++ AD +I D +G P+ +A++ DI+
Sbjct: 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDII 173
Query: 184 TL 185
L
Sbjct: 174 KL 175
Score = 39.6 bits (92), Expect = 5e-04
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 103 TYLHQAVIGN-SVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC-LLLKHKADQ 160
T LH A+I N S + L++N IN D G TPL+ A + +LL HKAD
Sbjct: 225 TPLHNAIIHNRSAIE---LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI 281
Query: 161 HIVDSSGVEPLTLAVEKANADIV 183
I D+ G P+ A + N D V
Sbjct: 282 SIKDNKGENPIDTAFKYINKDPV 304
Score = 35.7 bits (82), Expect = 0.008
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 56 IGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTY-LHQAVIGNSV 114
I VN + D + L+ A +L + GA N DD+ Y +H A+ N
Sbjct: 115 IDVN-IKDAELKTFLHYAIKKGDLESIKMLFEYGAD---VNIEDDNGCYPIHIAIKHNFF 170
Query: 115 MACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
+ L+ G N D G++PL+ A E G + + LL+ H +G PL A
Sbjct: 171 DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230
Query: 175 V 175
+
Sbjct: 231 I 231
Score = 33.0 bits (75), Expect = 0.063
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + +T+LH A+ + + + L G +N D G P+++A + + LLL+
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180
Query: 158 ADQHIVDSSGVEPLTLAVE 176
A ++ D++G PL A E
Sbjct: 181 AYANVKDNNGESPLHNAAE 199
Score = 28.0 bits (62), Expect = 3.3
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
IN + TPL A G V L +KH AD + +++ PL A++ DI+ L
Sbjct: 28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKL 86
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 39.5 bits (92), Expect = 6e-04
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 86 LALGASKDWTNPNDDHR--TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
L+ GA N D H+ T LH A E L+ G +N PD +PL+ A +
Sbjct: 154 LSYGAD---INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK 210
Query: 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAV 175
+ V +LL++ A D G PL ++V
Sbjct: 211 HYNKPIVHILLENGASTDARDKCGNTPLHISV 242
Score = 34.9 bits (80), Expect = 0.016
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 41 TNPNDDHRTYL--HQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN 98
N + L + A + + D ++ SP L+ A +N P++ L GAS D +
Sbjct: 177 ENKDQRLTELLLSYGANVNIPDKTNNSP---LHHAVKHYNKPIVHILLENGASTDARDKC 233
Query: 99 DDHRTYLHQAV---IGNSVMACEYLILNGLKINCPDA-QGKTPLYLATELGHTSQVC-LL 153
+ T LH +V ++ + L+ +G+ +N G T L+ + + + LL
Sbjct: 234 GN--TPLHISVGYCKDYDIL--KLLLEHGVDVNAKSYILGLTALHSSI---KSERKLKLL 286
Query: 154 LKHKADQHIVDSSGVEPLTLAVEK 177
L++ AD + ++S + PL+ AV++
Sbjct: 287 LEYGADINSLNSYKLTPLSSAVKQ 310
Score = 28.7 bits (64), Expect = 2.0
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 120 LILNGLKINCPDA-QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178
L+ G IN D +G T L+ ATE LLL + A+ +I D + PL AV+
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY 212
Query: 179 NADIV 183
N IV
Sbjct: 213 NKPIV 217
Score = 27.5 bits (61), Expect = 4.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
LHQAV ++ + L+ G +N PD + TPL++
Sbjct: 41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII 77
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 34.5 bits (80), Expect = 0.002
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
G TPL+LA GH V LLL+ AD + D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 24.1 bits (53), Expect = 8.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPD 131
D T LH A + + L+ G +N D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 31.6 bits (72), Expect = 0.026
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLA 141
T LH A ++ ++L+ G+ +N D+ G T L LA
Sbjct: 17 NTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 29.2 bits (66), Expect = 0.20
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
+N D G TPL+LA + G V LLK D ++ DS G+ L LA
Sbjct: 9 LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 33.1 bits (75), Expect = 0.058
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 62 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI 121
+D+ LY A +N+ ++C L GA K+ ++ LHQA + L+
Sbjct: 26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILL 81
Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
+G+ + D +G T LY A + G+ V L +K
Sbjct: 82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 115
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 32.7 bits (74), Expect = 0.089
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPL 171
E L+ G N D G PL++A+++ + V +LL H AD + D PL
Sbjct: 56 EELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL 109
Score = 26.9 bits (59), Expect = 7.3
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 96 NPNDDHRTY-LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYL--ATELGHTSQVCL 152
N DD Y LH A N+ L+ +G N D Q KTPLY T+ ++ L
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL 125
Query: 153 LLKHKAD-QHIVDSSGVEPL 171
L+++ A + VD G PL
Sbjct: 126 LVQYGAKINNSVDEEGCGPL 145
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 32.0 bits (73), Expect = 0.15
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 78 NLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYL-----ILNGLKINCPDA 132
++ V+ + + G + + N+ + L + N +++ + IL +KIN D
Sbjct: 197 SIKVIKYLIKKGVNIE--TNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDK 254
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
+G PL ++ ++ + LLK D + V G LT A++ N D++
Sbjct: 255 KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDML 305
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 30.7 bits (69), Expect = 0.45
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
IN DA G+T LY A G+ V LL++ A+ + V S+G L +AV++ +
Sbjct: 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS 266
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 27.6 bits (62), Expect = 0.52
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHI 162
G+TPL+LA E G+ V LLL AD +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 26.4 bits (59), Expect = 1.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 134 GKTPLYLATELGHTSQVCLLLKHKAD 159
G TPL+LA G+ V LLL+H AD
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGAD 27
Score = 24.9 bits (55), Expect = 3.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINC 129
D T LH A ++ + L+ +G IN
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|205215 pfam13034, DUF3895, Protein of unknown function (DUF3895). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 110 amino acids in length.
There are two completely conserved residues (Y and L)
that may be functionally important.
Length = 77
Score = 26.9 bits (60), Expect = 1.8
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIV 163
Y+ ++ CEYLI NG N + GK +Y VC L + + +
Sbjct: 11 YIENEEEISARELCEYLIENGGSPNKRYSTGKPKIY--------PYVCNYLDYLVKEGKL 62
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 28.6 bits (64), Expect = 2.2
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 119 YLILNGLKINCPDAQGKTPLYLATELGHTSQ---VCLLLKHKADQHIVDSSGVEPLTLAV 175
LI NG IN ++ G+TPLY G+ + + ++++ AD ++D G L + +
Sbjct: 94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153
Query: 176 EKAN 179
+ +
Sbjct: 154 QSNH 157
Score = 28.6 bits (64), Expect = 2.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
L+ +V N+ EYL+ G IN G T L+ A E
Sbjct: 262 LYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE 300
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 27.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKA 178
IN D +G+T L+ A S V LLL+ +D +I ++G + +A+ ++
Sbjct: 445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINES 496
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 27.1 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKAN 179
LK + + G+ PLTLA+ AN
Sbjct: 157 LKVRVSTEDIGEYGITPLTLALRIAN 182
>gnl|CDD|216954 pfam02270, TFIIF_beta, Transcription initiation factor IIF, beta
subunit. Accurate transcription in vivo requires at
least six general transcription initiation factors, in
addition to RNA polymerase II. Transcription initiation
factor IIF (TFIIF) is a tetramer of two beta subunits
associate with two alpha subunits which interacts
directly with RNA polymerase II. The beta subunit of
TFIIF is required for recruitment of RNA polymerase II
onto the promoter.
Length = 259
Score = 26.6 bits (59), Expect = 7.0
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 37 SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL 86
S+ W+ D + + I N+ LLL +++P + L
Sbjct: 23 SEKWSKAPGDSGGEVGKLRIKKNNGGKAQVSLLLNEELENYDIP-KEYDL 71
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 26.6 bits (59), Expect = 9.7
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 89 GASKDWTNPNDD-HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
K N D R+ L A I N + L+LN ++C A G T L+ +
Sbjct: 39 EPKKLNINCPDRLGRSALFVAAIENENLELTELLLN---LSCRGAVGDTLLHAISLEYVD 95
Query: 148 SQ-VCLLLKHKAD------QHIVDSS------GVEPLTLAVEKANADIVTL 185
+ LL A + D G+ L LA + N +IV L
Sbjct: 96 AVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKL 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.401
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,201,230
Number of extensions: 815373
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 63
Length of query: 185
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 94
Effective length of database: 6,901,388
Effective search space: 648730472
Effective search space used: 648730472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)