RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6300
(185 letters)
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 112 bits (280), Expect = 4e-30
Identities = 57/117 (48%), Positives = 72/117 (61%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L + +LP M ALA GA +W N D+ T L QA NS++ACE+L+ NG +N
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D+ G+ PL+ AT LGHT CL LK AD DS G +PLT+A+E ANADIVTL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Score = 62.5 bits (151), Expect = 4e-12
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 15 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAS 74
L + +LP M ALA GA +W N D+ T L +A+
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNAT-------------------PLIQAT 243
Query: 75 TVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQG 134
++L L GA+ + + R LH A I + G + D++G
Sbjct: 244 AANSLLACEFLLQNGANVN--QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 135 KTPLYLATELGHTSQVCLLL 154
+ PL +A E + V LL
Sbjct: 302 RDPLTIAMETANADIVTLLR 321
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 102 bits (256), Expect = 6e-27
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 7/122 (5%)
Query: 71 YRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVI---GNSVMACEYLILN 123
+ A +L + A A G P LH AV S+ +++I N
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 124 GLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
G ++ A G T L+ A + LLLK +A V+ +G L +A +K + +
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 184 TL 185
L
Sbjct: 276 EL 277
Score = 70.8 bits (173), Expect = 3e-15
Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 22/148 (14%)
Query: 17 YRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVIGVNDVSDLSPELLLYR 72
+ A +L + A A G P LH AV N S
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---------- 205
Query: 73 ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDA 132
LP++ + G D D T LH A + N + L+ + +
Sbjct: 206 ------LPLVDFIIQNGGHLDAKAA--DGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQ 160
G+T L +A + H LL + +A
Sbjct: 258 AGETALDIARKKHHKECEELLEQAQAGT 285
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 93.5 bits (232), Expect = 1e-23
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 7/143 (4%)
Query: 50 YLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKD----WTNPNDDHRTYL 105
Y+ + + L A ++ + A A G N ++ T L
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173
Query: 106 HQAVI---GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
H AV S+ ++L+ N ++ +G T L+ + + LLL+ KA I
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
+ SG PL +A + L
Sbjct: 234 ANESGETPLDIAKRLKHEHCEEL 256
Score = 68.1 bits (166), Expect = 2e-14
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 22/163 (13%)
Query: 2 VATDDVSDLSPELLLYRASTVHNLPVMCHALALGASKD----WTNPNDDHRTYLHQAVIG 57
+ L A ++ + A A G N ++ T LH AV
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS 179
Query: 58 VNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMAC 117
V+ S + L+ S + T LH + ++
Sbjct: 180 VDRTSLHIVDFLVQ------------------NSGNLDKQTGKGSTALHYCCLTDNAECL 221
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
+ L+ I + G+TPL +A L H LL + + +
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 81.9 bits (202), Expect = 9e-19
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 7/128 (5%)
Query: 65 SPELLLYRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVI---GNSVMAC 117
L+ A +L + A A G P LH AV S+
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
+++I NG ++ A G T L+ A + LLLK +A V+ +G L +A +K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
Query: 178 ANADIVTL 185
+ + L
Sbjct: 251 HHKECEEL 258
Score = 49.9 bits (119), Expect = 9e-08
Identities = 31/154 (20%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 11 SPELLLYRASTVHNLPVMCHALALGASKDWTNP----NDDHRTYLHQAVIGVNDVSDLSP 66
L+ A +L + A A G P LH AV N S
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190
Query: 67 ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK 126
+ ++ N G D D T LH A + N + L+
Sbjct: 191 DFII------QN----------GGHLDAKAA--DGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
+ + G+T L +A + H LL + +A
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEELLEQAQAGT 266
Score = 42.2 bits (99), Expect = 4e-05
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCP------DAQGKTPLYLATELG 145
+ L A+ +++ NG P A + L+LA ++
Sbjct: 123 HRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA 182
Query: 146 HTSQ---VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ + V ++++ + G L A D + L
Sbjct: 183 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 73.3 bits (181), Expect = 8e-16
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ A +NL ++ L G S +P + T LH A N V L+ G N
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
QG TPL+LA + GH V LLL +A+ ++ + SG+ PL L ++ + + +
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Score = 72.5 bits (179), Expect = 1e-15
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
G S + T LH A + + L+ G N + + +TPL++A GHT
Sbjct: 4 GISGGGGG--ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LL++KA + PL A + ++V L
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Score = 71.4 bits (176), Expect = 4e-15
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ AS + +LP++ + L GAS + N T LH A +YL+ N K+N
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+TPL+ A +GHT+ V LLL++ A+ ++ ++G PL +A + + + V
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Score = 70.2 bits (173), Expect = 1e-14
Identities = 27/88 (30%), Positives = 37/88 (42%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
T LH A V L+ C +G TPL++A + G LLL+
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + +G+ PL +AV N DIV L
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Score = 69.8 bits (172), Expect = 1e-14
Identities = 22/89 (24%), Positives = 31/89 (34%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ T LH A L+ N + G TPL+L + GH +L+KH
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
G PL +A N +V
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Score = 69.1 bits (170), Expect = 2e-14
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N T LH V + LI +G+ ++ G TPL++A+ G+ V LL+H+
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + G PL A ++ + DIVTL
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Score = 68.3 bits (168), Expect = 4e-14
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
T LH A ++ ++L+ + +N G +PL+ A + GHT V LLLK+
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + V S G PL +A + +
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYISVTDV 395
Score = 56.0 bits (136), Expect = 7e-10
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL---L 154
+ LHQA L+ NG N + G TPL +A LG+ S +L
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400
Query: 155 KHKADQHIVDSSGVEPL 171
+ + D +
Sbjct: 401 DETSFVLVSDKHRMSFP 417
Score = 52.9 bits (128), Expect = 8e-09
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 123 NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
G+ G TPL++A+ +GH V LL+ A ++ + PL +A + ++
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 183 VTL 185
Sbjct: 63 AKY 65
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 71.0 bits (175), Expect = 3e-15
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 9/148 (6%)
Query: 44 NDDHRTYLHQAVI-GVNDV--SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDD 100
N ++ + A + + + LL A+ +L + LAL
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQ-AAREADLAKVKKTLALEIINF--KQPQS 210
Query: 101 HRTYLHQAVI---GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
H T LH AV E L+ G +N + TPL++A E H + +L KH
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + +DS G L A + L
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRL 298
Score = 69.1 bits (170), Expect = 2e-14
Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 20/161 (12%)
Query: 19 ASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHN 78
A+ +L + LAL H T LH AV ++ ELLL +
Sbjct: 185 AAREADLAKVKKTLALEIINF--KQPQSHETALHCAVASLHPKRKQVAELLLRK------ 236
Query: 79 LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPL 138
GA+ + N D T LH A E L +G K+N D+ G+T L
Sbjct: 237 ----------GANVNEKN--KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Query: 139 YLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
+ A GH LLL + +D I+ G + E
Sbjct: 285 HRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQ 325
Score = 67.1 bits (165), Expect = 9e-14
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 84 HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
A T L A GN L + + D + TPL+LA
Sbjct: 9 DLADPSAKAVLTG-EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG 67
Query: 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V LLL+H AD H D G+ PL A + ++ L
Sbjct: 68 YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Score = 66.0 bits (162), Expect = 2e-13
Identities = 22/88 (25%), Positives = 33/88 (37%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ LH A E L+ +G +N D TPL+ A LLL H
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD +V+ G + +A + +T
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTY 175
Score = 65.2 bits (160), Expect = 4e-13
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
LL A + + +M L + ++ T LH A N V + L+ +G ++
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASD--GRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D G PL+ A GH LLLKH A + +D PL A K ++ +L
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Score = 57.1 bits (139), Expect = 3e-10
Identities = 13/85 (15%), Positives = 29/85 (34%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ T LH+A N V C L+ +G + GK+ + +A ++ K
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180
Query: 158 ADQHIVDSSGVEPLTLAVEKANADI 182
+ + + + + +
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINF 205
Score = 26.3 bits (59), Expect = 6.8
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 7/48 (14%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
+ T A + ++ + D L A++ G
Sbjct: 310 SLQGFTAAQMGNE-----AVQQILSESTPMRTSD--VDYRLLEASKAG 350
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 67.4 bits (166), Expect = 5e-15
Identities = 34/90 (37%), Positives = 42/90 (46%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
N T LH A I + + EYL+ NG N D G TPL+ A GH V LLL+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
HKA + PL A + + DIV L
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Score = 65.9 bits (162), Expect = 2e-14
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ AS ++P + + L G+ + + T LH+A + E L+ + +N
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKD--HAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
Q +PL+ A + GH V LLL + A ++ V+ G+ P+ +++ ++ L
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Score = 50.1 bits (121), Expect = 2e-08
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + LH A V + L+ G N + G P+ + S + L K++
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
Query: 158 AD 159
+
Sbjct: 133 SS 134
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 66.1 bits (162), Expect = 9e-15
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
+ D L +A L+ NG + D G TPL+LA GH V LLL+
Sbjct: 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD D G ++++ N D+ +
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ + T LH A + + L+ G + D GKT ++ + G+ +L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 26.4 bits (59), Expect = 3.5
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 141 ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ H L+ + + S + L A D V +
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRI 42
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 69.0 bits (170), Expect = 9e-15
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+D ++ LH A N+V A L+ NG + + + +TPL+LA G +LL H
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A++ I D P +A E+ + DIV L
Sbjct: 214 ANRDITDHMDRLPRDIAQERMHHDIVRL 241
Score = 60.9 bits (149), Expect = 8e-12
Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 8/143 (5%)
Query: 44 NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
D T L A + + E + + + + GAS + T
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDF------IYQGASLHNQT-DRTGET 59
Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKA-DQHI 162
LH A + A + L+ N D G+TPL+ A +L++++A D
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
G PL LA A ++
Sbjct: 120 RMHDGTTPLILAARLAVEGMLED 142
Score = 60.6 bits (148), Expect = 1e-11
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
D T L A E LI + +N D GK+ L+ A + + +LLK+
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A++ + ++ PL LA + + + +
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKV 208
Score = 53.2 bits (129), Expect = 4e-09
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ A+ V+N+ L GA+KD N + T L A S + L+ + +
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANRDI 218
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D + P +A E H V LL
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248
Score = 34.8 bits (81), Expect = 0.008
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVC-------------LLLKHKAD-QHIVDSSGVEPLT 172
+N G TPL +A+ G + + A + D +G L
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 173 LAVEKANADIV 183
LA + +D
Sbjct: 63 LAARYSRSDAA 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 66.6 bits (164), Expect = 1e-14
Identities = 25/88 (28%), Positives = 37/88 (42%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
RT LH A E L+ +G +N D T L+ ATE H V LL+K+
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD H ++++ N D+ +
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 65.1 bits (160), Expect = 5e-14
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
+ + LH A E L+ G+ + +TPL++A GH + V +LLK
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
H AD + D + L A E + ++V L
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Score = 59.7 bits (146), Expect = 5e-12
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D L +A L+ NG D G +PL+LA + GH S +LL+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ PL +A + +A+IV +
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEV 85
Score = 46.6 bits (112), Expect = 4e-07
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ T LH A N E LI G ++ KT ++ + G+ +L
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 67.8 bits (167), Expect = 1e-14
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+D ++ LH A N+V A L+ NG + + + +TPL+LA G +LL H
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A++ I D P +A E+ + DIV L
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRL 209
Score = 63.2 bits (155), Expect = 9e-13
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ T LH A + A + L+ N D G+TPL+ A +L++++
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 158 A-DQHIVDSSGVEPLTLAVEKANADIVTL 185
A D G PL LA A ++
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLED 110
Score = 62.4 bits (153), Expect = 2e-12
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
D T L A E LI + +N D GK+ L+ A + + +LLK+
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A++ + ++ PL LA + + + +
Sbjct: 149 ANKDMQNNREETPLFLAAREGSYETAKV 176
Score = 53.6 bits (130), Expect = 2e-09
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 111 GNSVMACEYLILNGLKI-NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVE 169
G++ I G + N D G+T L+LA + LL+ AD +I D+ G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 170 PLTLAVEKANADIVTL 185
PL AV + +
Sbjct: 61 PLHAAVSADAQGVFQI 76
Score = 52.4 bits (127), Expect = 6e-09
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ T L A S + L+ + + D + P +A E H V LL ++
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Query: 158 AD 159
Sbjct: 215 LV 216
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 67.0 bits (165), Expect = 1e-14
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
+HQ ++ I IN D +G TPL A G + V LL++ AD
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
++ L+LA K DIV +
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKM 87
Score = 64.7 bits (159), Expect = 1e-13
Identities = 23/88 (26%), Positives = 33/88 (37%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ L A + L+ G+ +N D G TPL A H V +LL+
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD I SG + LAV + +
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQV 153
Score = 61.6 bits (151), Expect = 1e-12
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+++ T L A + E+L+ NG ++ L LA G+T V +LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D + D +G PL AV + V +
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Score = 52.8 bits (128), Expect = 2e-09
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + T L AV GN V + L+ +G G + LA LG+ S ++ H
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Query: 158 AD 159
Sbjct: 159 LK 160
Score = 42.4 bits (101), Expect = 1e-05
Identities = 7/52 (13%), Positives = 15/52 (28%)
Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
++ G + ++ + + D G PL A +V
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 68.0 bits (167), Expect = 2e-14
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLK 155
N + T LH A I + E L+ G +N + G+T L+LA +L + V LLLK
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + V G P L + + I
Sbjct: 173 CGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202
Score = 66.0 bits (162), Expect = 1e-13
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 1/114 (0%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ AS L ++ ++LGA + + RT LH AV + L+ G +N
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
QG +P L T L + + + + + E +
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 63.7 bits (156), Expect = 6e-13
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ +T LH AVI N E L+ G D +G TPL+LA E G + V +L +
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 158 ADQHIV------DSSGVEPLTLAVEKANADIVTL 185
H+ + +G L LA IV L
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 68.2 bits (168), Expect = 2e-14
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
LY A + L GA N + LH S L+ G
Sbjct: 138 LYLACENQQRACVKKLLESGADV---NQGKGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+A+GK P+ L L L+ + ++ + + + I L
Sbjct: 195 KNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKL 248
Score = 64.4 bits (158), Expect = 4e-13
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
+ +H+A I ++ LI G +N A +PL+ A GH S V +LLKH A +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
V + PL A + D V L
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNL 87
Score = 64.0 bits (157), Expect = 7e-13
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
P D + +H+A V LI G I+ + TPLYLA E + V LL+
Sbjct: 96 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + PL A+ ++ L
Sbjct: 156 SGADVNQ-GKGQDSPLHAVARTASEELACL 184
Score = 47.0 bits (113), Expect = 7e-07
Identities = 5/63 (7%), Positives = 14/63 (22%), Gaps = 2/63 (3%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N + + + + + + + + H L+L
Sbjct: 196 NAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
Query: 158 ADQ 160
Q
Sbjct: 254 LKQ 256
Score = 43.2 bits (103), Expect = 1e-05
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+P++ A GH + L+ +I+ + V PL A + V +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI 54
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 68.7 bits (169), Expect = 2e-14
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N D T LHQA I ++V ++L+ NG IN PD +G PL+ A G+ L+
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A V+S G PL +A E+A +++
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQN 157
Score = 62.5 bits (153), Expect = 3e-12
Identities = 21/88 (23%), Positives = 31/88 (35%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
T LH A + LI +N D G TPL+ A G +L+++
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D V+ G +A E + L
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEEL 283
Score = 60.6 bits (148), Expect = 1e-11
Identities = 20/90 (22%), Positives = 30/90 (33%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
D A L+ G IN + G T L+ A + V L++
Sbjct: 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ A+ + D+ G PL A DI
Sbjct: 95 NGANINQPDNEGWIPLHAAASCGYLDIAEY 124
Score = 55.6 bits (135), Expect = 8e-10
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + S E ++ K G L A G T +V LL+
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERG 63
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + + G+ L A N D+V
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKF 91
Score = 55.6 bits (135), Expect = 9e-10
Identities = 18/88 (20%), Positives = 32/88 (36%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
D + A ++L + G T L++A G+T + LL++ +
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D +I D G PL A + +
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Score = 51.0 bits (123), Expect = 3e-08
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV-CLLLKH 156
+++ LH A + EYLI G + +++G TPL +A E + + +
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 157 KADQHIVDSSGVEPLTLAVEK 177
D + +
Sbjct: 163 GVDIEAARKEEERIMLRDARQ 183
Score = 49.0 bits (118), Expect = 1e-07
Identities = 15/62 (24%), Positives = 21/62 (33%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ D T LH A AC L+ N + + G+T +A E L K
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288
Query: 158 AD 159
Sbjct: 289 LL 290
Score = 41.7 bits (99), Expect = 4e-05
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ DA+ K L +G + + + + + G L A + + V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLR 58
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 68.7 bits (169), Expect = 2e-14
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 37 SKDWTNPNDDHRTYLHQAVIG----------VNDVSDLSPELLLYRASTVHNLPVMCHAL 86
S D D + VSD SP ++ A+ + + + +
Sbjct: 23 SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP---MHEAAIHGHQLSLRNLI 79
Query: 87 ALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH 146
+ G + + DH + LH+A +G + + L+ +G ++N A TPL+ A G
Sbjct: 80 SQGWAVNIIT--ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 147 TSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V LLL+H A +S P+ A + + + V
Sbjct: 138 WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNS 175
Score = 64.8 bits (159), Expect = 5e-13
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
P D + +H+A V LI G I+ + TPLYLA E + V LL+
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + PL V A+ ++ L
Sbjct: 212 SGADVNQ-GKGQDSPLHAVVRTASEELACL 240
Score = 56.0 bits (136), Expect = 5e-10
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
N + LH V S L+ G +A+GK P+ L +Q+ L +
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLER 275
Query: 156 HKAD 159
A
Sbjct: 276 EGAS 279
Score = 37.1 bits (87), Expect = 0.002
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 2/78 (2%)
Query: 108 AVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSG 167
+ L+ G + D + + + G + L S
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLM-GDAVSD 59
Query: 168 VEPLTLAVEKANADIVTL 185
P+ A + +
Sbjct: 60 WSPMHEAAIHGHQLSLRN 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 65.5 bits (161), Expect = 4e-14
Identities = 29/88 (32%), Positives = 38/88 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
T LH A N V EYL+ +G ++ D G PL+ A GH LL+KH
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A ++ D PL A K +I L
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKL 126
Score = 59.7 bits (146), Expect = 6e-12
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLI-LNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
N + L +A V + L + + + + TPL+ A S V LL
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+H AD H D G+ PL A + ++ L
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Score = 58.2 bits (142), Expect = 2e-11
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ LH A E L+ +G +N D TPL+ A G LLL+H
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + G PL L + + DI L
Sbjct: 132 ADPTKKNRDGNTPLDLVKDG-DTDIQDL 158
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 67.2 bits (165), Expect = 5e-14
Identities = 34/145 (23%), Positives = 47/145 (32%), Gaps = 5/145 (3%)
Query: 42 NPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
+ D + +P + + N D
Sbjct: 103 SHPRDASDTYLTQSQDCTPDTSHAP--AAVDSQPNPENEEEPRDEDWRLQLEAEN--YDG 158
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDA-QGKTPLYLATELGHTSQVCLLLKHKADQ 160
T LH AVI L G +N P+ G+TPL+LA E S + LLLK AD
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 161 HIVDSSGVEPLTLAVEKANADIVTL 185
G PL A+ + N + L
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARL 243
Score = 66.0 bits (162), Expect = 1e-13
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 1/114 (0%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ A + ++ GA + RT LH AV + E L+ G
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPE-PTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
G+TPL A + LL H A + + P + + +++D
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Score = 59.1 bits (144), Expect = 4e-11
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 86 LALGASKDWTN-PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
L A ++ + ND +T LH A I E L G + + G T L+LA +
Sbjct: 29 LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ C+LL+ + S + +
Sbjct: 89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 66.7 bits (164), Expect = 6e-14
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
GA D + R+ L AV NS+ + L+ +G +N G + L+ A+ G
Sbjct: 139 GADIDAVDIKSG-RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V L++ AD + + PL +A + DI+
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234
Score = 59.4 bits (145), Expect = 2e-11
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLI----LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
++D T LH AV+ ++ A L+ G +++ + +TPL+LA S V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ A +D G LA E + +
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Score = 59.0 bits (144), Expect = 3e-11
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ +T LH AVI L+ G D G+T +LA E + + LL
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102
Query: 158 ADQH----IVDSSGVEPLTLAVEKANADIVTL 185
A + G+ L +AV + V L
Sbjct: 103 APGTLDLEARNYDGLTALHVAVNTECQETVQL 134
Score = 57.5 bits (140), Expect = 1e-10
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNG----LKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ +T H A S L+ + L + + G T L++A V LL
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 154 LKHKADQHIVDS-SGVEPLTLAVEKANADIVTL 185
L+ AD VD SG PL AVE + +V L
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Score = 52.5 bits (127), Expect = 7e-09
Identities = 10/61 (16%), Positives = 18/61 (29%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ LH A + L+ +G + + TPL +A +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
Query: 158 A 158
A
Sbjct: 240 A 240
Score = 36.3 bits (85), Expect = 0.003
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLL----KHKADQHIVDSSGVEPLTLAVEKANADI 182
D G TPL++A G+ V L+ + + I ++ PL LAV +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 183 VTL 185
V L
Sbjct: 62 VRL 64
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 64.0 bits (157), Expect = 6e-14
Identities = 27/86 (31%), Positives = 37/86 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ R LH A + E+L+L G IN PD TPL A GH S V LLL
Sbjct: 37 LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
AD+ + G+ +A ++
Sbjct: 97 ADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 55.5 bits (135), Expect = 1e-10
Identities = 19/88 (21%), Positives = 32/88 (36%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
A+ + + + G +N G+ PL+ A + G + LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + D + PL AV + + V L
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKL 91
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 65.4 bits (160), Expect = 1e-13
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 52 HQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG 111
+ L+P +LL A+ L V+ A+ PN++ T LH A+ G
Sbjct: 7 KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS--QPNEEGITALHNAICG 64
Query: 112 NSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSS-GVEP 170
+ ++LI G +N PD+ G TPL+ A T L++H A S G
Sbjct: 65 ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124
Query: 171 LTLAVEKAN 179
Sbjct: 125 FEKCDPYRE 133
Score = 44.9 bits (107), Expect = 3e-06
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 118 EYLILNGLKINCPD---AQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
++ L A G V +K D + G+ L A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 175 VEKANADIVTL 185
+ AN IV
Sbjct: 62 ICGANYSIVDF 72
Score = 35.7 bits (83), Expect = 0.005
Identities = 7/79 (8%), Positives = 15/79 (18%), Gaps = 5/79 (6%)
Query: 70 LYRASTVHN--LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKI 127
+ + + S N L + + +
Sbjct: 125 FEKCDPYREGYADCATYLADVEQSMGLMN--SGAVYALWDYSAEFGD-ELSFREGESVTV 181
Query: 128 NCPDAQGKTPLYLATELGH 146
D +T + A G
Sbjct: 182 LRRDGPEETDWWWAALHGQ 200
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 65.7 bits (161), Expect = 1e-13
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L +S ++ + PND+ T LH AV ++L+ G+ +N
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVE---PLTLAVEKANADIVTL 185
D+ G TPL+ A + L++ A + S ++ +E+
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Score = 61.9 bits (151), Expect = 3e-12
Identities = 20/88 (22%), Positives = 33/88 (37%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
N L + + + +I + P+ +G T L+ A GHT V L++
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIV 183
+ + DS G PL A N +
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVC 119
Score = 59.5 bits (145), Expect = 2e-11
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
P + L N I +G+++ + L ++ G V ++
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
D + + G+ L AV + +IV
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Score = 50.7 bits (122), Expect = 3e-08
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKIN---CPDAQGKTPLYLATELGHTSQVCLLL 154
+ D T LH A N+V C++L+ +G + D Q E G+T L
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADI 182
+ I++ + L + + ++
Sbjct: 160 GVQEKMGIMNKGVIYALWDYEPQNDDEL 187
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 63.2 bits (155), Expect = 2e-13
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
++ T L+ A + E L+ NG +N DA G TPL+LA +GH +LLKH
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
AD + D G +++ N D+
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLA 129
Score = 59.7 bits (146), Expect = 4e-12
Identities = 32/86 (37%), Positives = 42/86 (48%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D L +A L+ NG +N D G TPLYLAT GH V +LLK+ AD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 160 QHIVDSSGVEPLTLAVEKANADIVTL 185
+ VD+ G PL LA + +I +
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEV 98
Score = 50.5 bits (122), Expect = 1e-08
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ T LH A + E L+ +G +N D GKT ++ G+ +L K
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 37.7 bits (89), Expect = 4e-04
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
+ +G + L A G +V +L+ + AD + D G+ PL LA
Sbjct: 5 HHHHHHG-------SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 178 ANADIVTL 185
+ +IV +
Sbjct: 58 GHLEIVEV 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 64.0 bits (157), Expect = 2e-13
Identities = 24/88 (27%), Positives = 31/88 (35%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + L A G L+ + IN D G TPL A H V LL
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD SG P+ LAV + +
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQV 153
Score = 62.4 bits (153), Expect = 7e-13
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
++ T L A + +L+ G + + ++ L LA+ G+T V LLL+
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D +I D +G PL AV + V
Sbjct: 93 VDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Score = 62.4 bits (153), Expect = 8e-13
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 102 RTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
+HQ + + + G +N PD +G TPL A+ G V LL+ AD
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 161 HIVDSSGVEPLTLAVEKANADIVTL 185
HI+ L+LA DIV L
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL 87
Score = 54.0 bits (131), Expect = 9e-10
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + T L AV GN V E L+ G + G TP+ LA LG+ ++ H
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Query: 158 ADQHIVDSSG 167
+
Sbjct: 159 LKLFQSNLVP 168
Score = 40.1 bits (95), Expect = 1e-04
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQ-HIVDSSGVEPLTLAVEKANADIVTL 185
++ G Q+ L+ + + D G PL A + V
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRF 54
Score = 33.9 bits (79), Expect = 0.014
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTP 137
D T + AV + + + LK+ + P
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 63.6 bits (156), Expect = 3e-13
Identities = 28/88 (31%), Positives = 39/88 (44%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+D + LH A E LI+ G +IN + TPL+LA GH V LL++K
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + V+ G PL A +
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAED 123
Score = 62.8 bits (154), Expect = 7e-13
Identities = 19/88 (21%), Positives = 28/88 (31%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N T LH A + L+ IN + G PL+ A G L+ +
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A I + G P+ A +
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRER 156
Score = 62.1 bits (152), Expect = 1e-12
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ + + + +A + N +N D G +PL+ A G ++ V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
A ++++ PL LA + DIV
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQK 90
Score = 55.9 bits (136), Expect = 2e-10
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N+ LH A E L+ NG ++ + G+ P+ A K
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161
Query: 158 AD 159
+
Sbjct: 162 QN 163
Score = 32.4 bits (75), Expect = 0.047
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHT 147
N + +A + E G +N + P G T
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNLN------RIPYKDTFWKGTT 178
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 64.7 bits (159), Expect = 3e-13
Identities = 26/88 (29%), Positives = 38/88 (43%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + R+ LH A V C L+ G I+ +TPL A E H V L+K
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A D+ G L LA +K + ++V
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Score = 64.0 bits (157), Expect = 5e-13
Identities = 18/88 (20%), Positives = 32/88 (36%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+++ LH A V E L+ ++ + G +PL++A V L L
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
+D + + G PL A +
Sbjct: 201 SDVTLKNKEGETPLQCASLNSQVWSALQ 228
Score = 63.6 bits (156), Expect = 6e-13
Identities = 25/88 (28%), Positives = 35/88 (39%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+D T + A V + L+ G IN D + L+ A G +LL K
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D H V+ G PL +A + D V L
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVL 195
Score = 62.8 bits (154), Expect = 1e-12
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLK-INCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ + T LH A +YL+ NG +NC D G TP+ ATE H V LLL
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
+D +I D+ L A DI +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEI 162
Score = 59.0 bits (144), Expect = 4e-11
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
++D RT L +A N + A +YLI G ++ DA+G T L+LA + GH V LL +
Sbjct: 41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 158 A-DQHIVDSSGVEPLTLAVEKANADIVTL 185
D + D G P+ A E + D+V L
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Score = 52.0 bits (126), Expect = 9e-09
Identities = 12/63 (19%), Positives = 20/63 (31%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N + LH A N + + + +G+TPL A+ + K
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233
Query: 158 ADQ 160
D
Sbjct: 234 QDS 236
Score = 44.3 bits (106), Expect = 5e-06
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
++PL+ A E GH +L++ A+ PL A E + + V
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 64.2 bits (157), Expect = 3e-13
Identities = 31/180 (17%), Positives = 52/180 (28%), Gaps = 14/180 (7%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI---------GVNDVSDLSP 66
++RA D D T + S
Sbjct: 16 VFRALYTFEPRTPDELYIEEG--DIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI 73
Query: 67 ELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GL 125
+ L+ A+ NL + L + + T L+ A G E L +
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLD--KAGSTALYWACHGGHKDIVEMLFTQPNI 131
Query: 126 KINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
++N + G T L+ A G+ V LLL A + + +A A A ++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191
Score = 62.3 bits (152), Expect = 2e-12
Identities = 12/80 (15%), Positives = 26/80 (32%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N T LH A + L+ G + + + + K +AT S +
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Query: 158 ADQHIVDSSGVEPLTLAVEK 177
A + + ++ + +
Sbjct: 197 AVRTLSNAEDYLDDEDSDLE 216
Score = 48.4 bits (116), Expect = 2e-07
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
+ + +A+ + L + I T + T G L
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVA 67
Query: 162 IVDSSGVEPLTLAVEKANADIV 183
S PL A ++ N +
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWL 89
Score = 41.1 bits (97), Expect = 6e-05
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
P G+ ++ A L + D + K ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61
Score = 33.8 bits (78), Expect = 0.019
Identities = 4/49 (8%), Positives = 10/49 (20%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH 146
N + + A + +A+ + H
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 63.6 bits (156), Expect = 4e-13
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ +RT L A + A + L+ N K+ D +G T L A + LL
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
++ + D SG PL ++ +++
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Score = 62.0 bits (152), Expect = 1e-12
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ +T L ++I +L+ +G +N + +G+TPL +A++ G + V LL+
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD D +G+ A +++ +
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKI 185
Score = 59.7 bits (146), Expect = 1e-11
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + T L AV N + E L+ G +N D GKTPL + G++ LL+H
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A+ + + G PL +A + ++IV
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKK 152
Score = 52.4 bits (127), Expect = 5e-09
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N + T L A + L+ G I+ D G T A G + + + +
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Query: 158 A 158
Sbjct: 191 R 191
Score = 47.4 bits (114), Expect = 3e-07
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
G+ D + + ++L N D+ +TPL +A LG +
Sbjct: 1 GSHMD-----KNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMEN 49
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ L+++ D G L AV+ I
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK 86
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 64.9 bits (159), Expect = 4e-13
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPND-DHRTYLHQAVIGNSVMACEYLILNGLKIN 128
Y A +N+ ++C L GA N ++ LHQA + L+ +GL +
Sbjct: 35 SYYAIADNNVRLVCTLLNAGA-----LKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS 89
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVE-PLTLAVEKANADIVTL 185
D +G T LY A + G+ V L +K +G + AV + IV+
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY 147
Score = 58.3 bits (142), Expect = 7e-11
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + + A+ N+V L+ G N + + PL+ A L T V +LL
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D D G L AV+ N V L
Sbjct: 86 LDDSQFDDKGNTALYYAVDSGNMQTVKL 113
Score = 56.8 bits (138), Expect = 3e-10
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
+ +T + AV+ N V Y + A + +++ + GH
Sbjct: 118 NWRLMFYG-KTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKNGHVD 175
Query: 149 QVCLLLKHKADQHIVDSSGVEP-LTLAVEKANADIVTL 185
+ LLL + + +S P + LA++ + +++
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA 213
Score = 52.1 bits (126), Expect = 1e-08
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD 164
L + S L+ D G + Y A + VC LL A +++++
Sbjct: 4 LSRINTWKSKQL--KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61
Query: 165 SSGVEPLTLAVEKANADIVTL 185
PL A + IV +
Sbjct: 62 --NEFPLHQAATLEDTKIVKI 80
Score = 41.0 bits (97), Expect = 8e-05
Identities = 8/96 (8%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
S + N + + A+ + + L + I + L
Sbjct: 184 MTSTNTNN-SLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAE 235
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
++++ + + L + +I++
Sbjct: 236 IAKMIIEKHVEYKSDSYTK--DLDIVKNNKLDEIIS 269
Score = 32.1 bits (74), Expect = 0.072
Identities = 4/55 (7%), Positives = 14/55 (25%)
Query: 105 LHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
+ V+ + + +I ++ + +L L+
Sbjct: 225 NLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 62.8 bits (154), Expect = 5e-13
Identities = 32/86 (37%), Positives = 43/86 (50%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
D L +A L+ NG +N DA G TPL+LA GH V +LLK+
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
AD + VD +G+ PL LA + +IV
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIV 96
Score = 62.0 bits (152), Expect = 1e-12
Identities = 32/88 (36%), Positives = 42/88 (47%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ T LH A + E L+ NG +N D G TPL LA GH V +LLK+
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + D G PL LA + +IV +
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEV 131
Score = 61.6 bits (151), Expect = 1e-12
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ T L A + + E L+ NG +N D +G TPL+LA GH V +LLK+
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + D G ++++ N D+ +
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 49.7 bits (120), Expect = 4e-08
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ + T LH A + + E L+ NG +N D GKT ++ + G+ +L K
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 39.3 bits (93), Expect = 2e-04
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ + L A G +V +L+ + AD + D+SG PL LA + +IV +
Sbjct: 8 HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 62.8 bits (154), Expect = 5e-13
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N RT L +GN +A L+L G + D G ++ A G + LL+ +
Sbjct: 35 NGFGRTALQVMKLGNPEIA-RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD +I D+ G PL LA ++ + +V
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Score = 59.7 bits (146), Expect = 6e-12
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ L A + L+ N + +N + G+T L + G+ LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A+ + D +G + A D +
Sbjct: 61 ANPDLKDRTGFAVIHDAARAGFLDTLQT 88
Score = 57.8 bits (141), Expect = 3e-11
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ +H A + + L+ +N D +G PL+LA + GH V L+KH
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 158 A-DQHIVDSSGVEPLTLAVEKANADIVTL 185
A + + G LA ++V+L
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Score = 48.1 bits (116), Expect = 1e-07
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+++ LH A + E+L+ + + + +G T LA G V L+ +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Query: 157 KA 158
A
Sbjct: 160 GA 161
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 63.6 bits (156), Expect = 6e-13
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
GA D D + T LH A + L+ G + D +G + ++LA + GHTS
Sbjct: 65 GAIVDQLG-GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKAN-ADIVTL 185
V L+ D ++D +G+ PL A + + D L
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161
Score = 61.3 bits (150), Expect = 5e-12
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 70 LYRAST-VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L A+ H++ L S + + T LH AV+ + L+ G ++
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
+ +G++ L LA + + + L + + +
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAK 236
Score = 60.5 bits (148), Expect = 1e-11
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
+ +D + +A C L+ G + PD + T L+ A V +
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63
Query: 156 HKADQHIVDS-SGVEPLTLAVEKANADIVTL 185
A + PL A + + +V
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Score = 59.8 bits (146), Expect = 2e-11
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC-LLLKH 156
+ + + +H A YLI G ++ D G TPL A H+ LLL
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 157 KADQHIVDSS-GVEPLTLAVEKANADIVTL 185
++ D L AV N +++L
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Score = 59.4 bits (145), Expect = 3e-11
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI-GNSVMACEYLILNGLKIN 128
++ A+ + ++ + +A G D + + T L A +SV L+ + +N
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMD--QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170
Query: 129 CPD-AQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D T L+ A G+T+ + LLL+ A+ + G L LA ++ N ++
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228
Score = 46.7 bits (112), Expect = 8e-07
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ D + AT+ G + L++ D D V L A D+V
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 62.0 bits (152), Expect = 9e-13
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N +T L + G++ +A L+ G N D G +P++ A G + +L++H
Sbjct: 33 NRFGKTALQVMMFGSTAIA-LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD ++ D +G P+ LAV++ + +V+
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Score = 61.3 bits (150), Expect = 1e-12
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + +H A + + L+ +G +N PD G P++LA + GHT+ V L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
+D H D+ G+ PL LA+++ D+V +
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDI 151
Score = 44.7 bits (107), Expect = 2e-06
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ +H AV +L ++ DA+G TPL LA + G V +L H
Sbjct: 98 DGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 31.6 bits (73), Expect = 0.081
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 134 GKTPLYLATELGHTSQV-CLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
L A G +V LL + ++ G L + + + I
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALE 53
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 62.5 bits (153), Expect = 1e-12
Identities = 17/88 (19%), Positives = 32/88 (36%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ L A ++ E L +++ D +G TPL +A L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD ++ +S P A + +I+
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAY 90
Score = 61.3 bits (150), Expect = 3e-12
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
LL A+ V D + + T L+ AV N + + LI G IN
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVD--TEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKA-DQHIVDSSGVEPLTLAVEKANADIVTL 185
++ +P A G T + +LKH D + + G L A EK + D V L
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Score = 56.7 bits (138), Expect = 2e-10
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGL-KINCPDAQGKTPLYLATEL-----GHTSQVC 151
N L A + + L+ +G I+ + G T L A L + V
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LL+++ ADQ I D+SG + A +K +I +
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Score = 49.8 bits (120), Expect = 4e-08
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNG-LKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
N + A Y++ + +N + G L A E GH V LLL+
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 157 -KADQHIVDSSGVEPLTLAVEKANA-----DIVTL 185
+ D + G L AV DIV L
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Score = 49.0 bits (118), Expect = 9e-08
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 98 NDDHRTYLHQAVIGNSVMAC-----EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
ND T L +AV + L+ NG + D G+T + A + G+T +
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 153 LLKH 156
L ++
Sbjct: 197 LAQY 200
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 61.7 bits (151), Expect = 1e-12
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATEL 144
L GA+ + PN R + ++G++ +A E L+L+G + NC D T P++ A
Sbjct: 32 LEAGANPN--APNSYGRRPIQVMMMGSARVA-ELLLLHGAEPNCADPATLTRPVHDAARE 88
Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G + +L + A + D+ G P+ LA E + D+
Sbjct: 89 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Score = 57.5 bits (140), Expect = 3e-11
Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 28/152 (18%)
Query: 32 LALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91
L GA+ + PN R + ++G V+ ELLL GA
Sbjct: 32 LEAGANPN--APNSYGRRPIQVMMMGSARVA----ELLLLH----------------GAE 69
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC 151
+ + +H A + L G +++ DA G+ P+ LA ELGH
Sbjct: 70 PNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
L + + + +DI
Sbjct: 129 YLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 63.3 bits (155), Expect = 1e-12
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKH 156
+ L +AV V + L+ G +N + + G TPL+ A ++ V LLL+H
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + +G P LA + ++ L
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKL 90
Score = 63.3 bits (155), Expect = 2e-12
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L GA+ ++ + T LH AV + E L+ +G G TP LA G
Sbjct: 25 LEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ L L AD + D G A +
Sbjct: 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Score = 62.1 bits (152), Expect = 4e-12
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 98 NDDHRTYLHQAVIGNSVMAC----EYLILNGLKINCPDAQGKTPLYLATELGHTSQV-CL 152
++ R L A++ + L+ +G +N +GKTPL LA E H V L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
L + + + DS G L LAVE I L
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271
Score = 59.8 bits (146), Expect = 3e-11
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQ- 149
+D T L A V + L+ G +N D G+ L A S
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Query: 150 ---VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
LLL H AD ++ G PL LAVEK + +V
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Score = 59.4 bits (145), Expect = 4e-11
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ T A I SV + + G +N D G T A G + L K
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 158 ADQHIVDSSGVE----------PLTLAVEKANADIVTL 185
A+ ++ + + L A EK + +++ +
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Score = 54.0 bits (131), Expect = 3e-09
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD----------AQGKTPLYLATELGHT 147
+ T +A + V A ++L G +N G T L A E GH
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 148 SQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIV 183
+ +LL AD + D+ G L A+ ++ V
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Score = 52.1 bits (126), Expect = 1e-08
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILN-GLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ +T L AV + + L+ ++IN D+ GKT L LA EL LL K
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 157 KADQHIVD 164
A D
Sbjct: 276 GASTDCGD 283
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 60.4 bits (148), Expect = 2e-12
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
GA + + + RT LH A + + L+ G +N D G+TPL+LA GH
Sbjct: 25 GADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
V LLL+ AD + D +G PL LA + ++V L
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Score = 58.1 bits (142), Expect = 1e-11
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
+ RT LH A + + L+ G +N D G+TPL+LA GH V LLL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 160 QHIVDSSGVEPLTLAVEKANADIV 183
+ D +G PL LA + ++V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVV 84
Score = 48.5 bits (117), Expect = 4e-08
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + RT LH A + + L+ G +N D G+TPL+LA GH V LLL+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 158 A 158
A
Sbjct: 125 A 125
Score = 40.8 bits (97), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G+TPL+LA GH V LLL+ AD + D +G PL LA + ++V L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 60.1 bits (147), Expect = 3e-12
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKT-PLYLATEL 144
L GA + N R + ++G++ +A E L+L+G + NC D T P++ A
Sbjct: 32 LEAGADPN--ALNRFGRRPIQVMMMGSAQVA-ELLLLHGAEPNCADPATLTRPVHDAARE 88
Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G + +L + A + D+ G P+ LA E+ + DI
Sbjct: 89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129
Score = 57.1 bits (139), Expect = 4e-11
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
L A V L+ G N + G+ P+ + G LLL H
Sbjct: 9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG 67
Query: 158 ADQHIVDSSGV-EPLTLAVEKANADIVTL 185
A+ + D + + P+ A + D + +
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVV 96
Score = 51.3 bits (124), Expect = 5e-09
Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 32 LALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91
L GA + N R + ++G V+ ELLL GA
Sbjct: 32 LEAGADPN--ALNRFGRRPIQVMMMGSAQVA----ELLLLH----------------GAE 69
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC 151
+ + +H A + L G +++ DA G+ P+ LA E GH
Sbjct: 70 PNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 152 LLLKHKAD 159
L D
Sbjct: 129 YLHAATGD 136
Score = 43.2 bits (103), Expect = 5e-06
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 127 INCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
I+ L A G V LL+ AD + ++ G P+ + + +A + L
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAEL 62
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 61.0 bits (149), Expect = 3e-12
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKH 156
+++ RT L S L G ++ D + G T L++A V L++
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + D G+ L LA E
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGN 161
Score = 60.6 bits (148), Expect = 5e-12
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
+ ++ T A A L+ ++ D G+T L LG V LL +
Sbjct: 39 DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 97
Query: 156 HKADQHIVDS-SGVEPLTLAVEKANADIVTL 185
AD D G+ L +A ++V
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Score = 57.5 bits (140), Expect = 5e-11
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
GA D + T LH A E L+ G I D +G T L LA E+
Sbjct: 96 AEAGADLDHRDMRG-GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154
Query: 146 HTSQVCLLLKHKAD 159
T+ ++
Sbjct: 155 KTTPKGNPMQFGRR 168
Score = 48.3 bits (116), Expect = 1e-07
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + + ++ +TP + A + LL
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL-ED 66
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
D VD +G L + V L
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRL 94
Score = 40.9 bits (97), Expect = 6e-05
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181
+N + + +G + + GH+ AD V S P A KA+
Sbjct: 2 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQ 58
Query: 182 IVTL 185
++
Sbjct: 59 ALSQ 62
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 61.8 bits (150), Expect = 3e-12
Identities = 20/88 (22%), Positives = 32/88 (36%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ + A G E ++ + D +T L+ A GHT V LL+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ D +G PL +A +IV
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Score = 59.9 bits (145), Expect = 1e-11
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ D RT LH A E+L+ G+ +N D G +PL++A G V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + V+ +G PL A K +I +
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Score = 56.4 bits (136), Expect = 3e-10
Identities = 20/88 (22%), Positives = 34/88 (38%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+D + LH A + L++ G +N + G TPL+ A +LL+
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
A+ D + A K N +V +
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Score = 55.6 bits (134), Expect = 5e-10
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ A++ ++ L GA + N + T LH A N L+ G +
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVN--AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D T ++ A G+ V +LL +KA +I D+ G PL LA ++ +
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Score = 53.7 bits (129), Expect = 3e-09
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%)
Query: 44 NDDHRTYLHQAVI-------------GVN-DVSDLSPELLLYRASTVHNLPVMCHALALG 89
+D + LH A G + + + + L+ A++ + + L G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 90 ASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ 149
A+ D + T +H+A ++ L+ N D +G TPL+LA + +
Sbjct: 130 ANPD--AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 150 VCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
L+ A +I + PL +A K ++
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILK 221
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 62.7 bits (153), Expect = 4e-12
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
RT LH A +++ +YL+ G + D GKTP+ LA + G V L++
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
A VD++ LA + +IV +
Sbjct: 336 GASVEAVDATDHTARQLAQANNHHNIVDI 364
Score = 60.0 bits (146), Expect = 3e-11
Identities = 32/178 (17%), Positives = 49/178 (27%), Gaps = 33/178 (18%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
+ N + T P + LH G ++ E +
Sbjct: 65 NPQGYGNGNDFLGDFNHTNLQ--IPTEPEPESPIKLHTEAAGSYAIT----EPITRE--- 115
Query: 76 VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK--------I 127
+ +RT LH +S E LI++ K +
Sbjct: 116 -------------SVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159
Query: 128 NCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
N D TPL LA V L+K AD I + S L A + ++
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217
Score = 59.2 bits (144), Expect = 6e-11
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
++D +T + A + YLI G + DA T LA H + V + + +
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369
Query: 158 ADQ 160
++
Sbjct: 370 PER 372
Score = 56.9 bits (138), Expect = 3e-10
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 16/145 (11%)
Query: 42 NPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
+RT LH N ++ S +L+++ A +A GA + + D
Sbjct: 120 IDPRHNRTVLHWIAS--NSSAEKSEDLIVHEAKEC---------IAAGADVNAMD--CDE 166
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK---A 158
T L AV+ YL+ G + ++ L+ A + +L
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226
Query: 159 DQHIVDSSGVEPLTLAVEKANADIV 183
D +D +G+ L + D V
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQV 251
Score = 53.0 bits (128), Expect = 6e-09
Identities = 8/88 (9%), Positives = 21/88 (23%), Gaps = 2/88 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
Q + ++ N P+ + L+ G + + +
Sbjct: 58 QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRES 116
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ I L ++A+
Sbjct: 117 VNI-IDPRHNRTVLHWIASNSSAEKSED 143
Score = 36.9 bits (86), Expect = 0.002
Identities = 8/90 (8%), Positives = 19/90 (21%), Gaps = 1/90 (1%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
N + + + +S++ Y + N P G+
Sbjct: 23 NEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHT 82
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ + L + I
Sbjct: 83 NLQIPTEPEPESPIKLHTEAAG-SYAITEP 111
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 60.5 bits (148), Expect = 9e-12
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLK--INCPDAQGKTPLYLATELGHTSQVCLLLK 155
+D T H A ++ + L LK +N QG T L+LA L++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ A I D PL A + ++ L
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Score = 59.0 bits (144), Expect = 3e-11
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 102 RTYLHQAVI-GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD- 159
LHQA + E L + D G+ PL+ + LL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 160 --QHIVDSSGVEPLTLAVEKANADIVTL 185
D SG P +A N ++V
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Score = 58.2 bits (142), Expect = 5e-11
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH- 156
+ T LH AV ++LI NG + D + PL+ A +G + LL
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
K+ + D G PL A+ + + D L
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Score = 57.5 bits (140), Expect = 1e-10
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ---GKTPLYLATELGHTSQVCLLL 154
+ D R LH +V + +L+ +N D G TP ++A +G+ V L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 155 KH--KADQHIVDSSGVEPLTLAVEKANADIVTL 185
K D + + + GV L LAV K ++
Sbjct: 93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Score = 56.7 bits (138), Expect = 2e-10
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGL-KINCPDAQGKTPLYLATELGHTSQV-CLLLK 155
+ ++ LH+A S+ E L G +N D QG TPL+ A GH L+ K
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADI 182
+ A+ +VD+ G + +A+ +
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQVKKF 223
Score = 41.3 bits (98), Expect = 6e-05
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 134 GKTPLYLATELGHTSQVC-LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
PL+ A +V LL + D G PL +V +I +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 54
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 61.0 bits (149), Expect = 1e-11
Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 14/134 (10%)
Query: 44 NDDHRTYLHQAVI-GVNDVSDLSPELLLYRASTVHNLPVMCH--ALALGASKDWTNPNDD 100
+++H L+ +V + ++ + LL + H L W
Sbjct: 241 DNEHTVPLYLSVRAAMVLLT----KELLQKTDVFLIQACPYHNGTTVLPDRVVW------ 290
Query: 101 HRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
++ A + + L ++ G + + + L A
Sbjct: 291 -LDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Query: 161 HIVDSSGVEPLTLA 174
S ++
Sbjct: 350 RTRSRSRARSSAVS 363
Score = 60.3 bits (147), Expect = 3e-11
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+D++ +H A LI G+ + G T L+LA + G L
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ G +P+ LAV D+V
Sbjct: 77 EVHSLWH--GQKPIHLAVMANKTDLVVA 102
Score = 59.1 bits (144), Expect = 5e-11
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLI-------------LNGLKINCPDAQGKTPLYLATEL 144
+++H L+ +V V+ + L+ NG + + A +
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300
Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ LL + + ++G +KA + +
Sbjct: 301 SKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341
Score = 59.1 bits (144), Expect = 6e-11
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 31/156 (19%)
Query: 44 NDDHRTYLHQAVI-GVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR 102
+ T L +A+ + +L++ + D N
Sbjct: 170 DKADETPLMRAMEFRNREAL----DLMMDTVPSKS-----------SLRLD--YANKQGN 212
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
++LH A++ N + G+ +N D + PLYL+ LL+ I
Sbjct: 213 SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272
Query: 163 V-------------DSSGVEPLTLAVEKANADIVTL 185
++ + A + + +++ L
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308
Score = 58.3 bits (142), Expect = 1e-10
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 98 NDDHRTYLHQAVIGNSVMA--CEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL- 154
+ +T LH V + L+ G D +TPL A E + + L++
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194
Query: 155 ----KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
K + G L A+ D+
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229
Score = 55.6 bits (135), Expect = 1e-09
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N T LH A V +YL G + G+ P++LA T V L++
Sbjct: 50 NRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGA 107
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIV 183
+ G P +L E ++
Sbjct: 108 KE------RGQMPESLLNECDEREVN 127
Score = 52.9 bits (128), Expect = 7e-09
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ--VCLLLK 155
+ + + +N + + +G+T L+ LG + +L++
Sbjct: 108 KERGQMPESLLNECD------EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161
Query: 156 HKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A D + PL A+E N + + L
Sbjct: 162 LGASPTAKDKADETPLMRAMEFRNREALDL 191
Score = 46.4 bits (111), Expect = 1e-06
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L D + +++A G T +V L++ I + G L LA +
Sbjct: 6 TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65
Query: 180 ADIVTL 185
D
Sbjct: 66 VDTAKY 71
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 57.0 bits (139), Expect = 1e-11
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
+ RT LH A + + L+ G +N D G+TPL+LA GH V LLL+ AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 160 QHIVDSSGVEPLTLAVEKANADIV 183
+ D +G PL LA + ++V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVV 84
Score = 48.9 bits (118), Expect = 2e-08
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 89 GASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS 148
GA + + + RT LH A + + L+ G +N D G+TPL+LA GH
Sbjct: 25 GADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 149 QVCLLLKHKA 158
V LLL+ A
Sbjct: 83 VVKLLLEAGA 92
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 58.5 bits (142), Expect = 2e-11
Identities = 16/183 (8%), Positives = 36/183 (19%), Gaps = 33/183 (18%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
+ A+ + G + L+ L +
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDV---------------LRNNND 51
Query: 76 VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAV------IGNSVMACEYLILNGLKINC 129
+ + GA + T I + C+ + G I
Sbjct: 52 EARYKISMFLINKGADIKSRT--KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
Query: 130 PDAQGKTPLYLATELGHTSQV-------CLLLKHKADQHIVDSSGVEPLTLAVEKANADI 182
K ++ + + + I D G+ L
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169
Query: 183 VTL 185
+ +
Sbjct: 170 LKM 172
Score = 49.3 bits (118), Expect = 6e-08
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 98 NDDHRTYLHQAVIGNSVMACE-------YLILNGLKINCPDAQGKTPLYLATELGHTSQV 150
++ + + + V E +GL++ D G T L +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170
Query: 151 CLLLKHKADQHIVDSS 166
++ + ++ ++S
Sbjct: 171 KMMEDYIKKYNLKENS 186
Score = 30.0 bits (68), Expect = 0.30
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQHIV---DSSGVEPLTLAVEKANADIVTL 185
+ A LG L + + + + L ++A I
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 59.7 bits (144), Expect = 4e-11
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 44 NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
+ +RT LH +I A+ + L ++ + ++ + ++ +
Sbjct: 198 DSMNRTILHHIIITSGMTGCS--------AAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249
Query: 104 YLHQAVIGNSVMACE---YLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQ 160
+ E + +N D+ G T L +A LG+ S V LL + AD
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309
Query: 161 HIVDSSGVEPLTLAVE 176
I + SG+ P+
Sbjct: 310 FIANKSGLRPVDFGAG 325
Score = 50.8 bits (121), Expect = 4e-08
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Query: 91 SKDWTNPNDDHRTYLHQAVIGNSVM-ACEYLILNGLKINCP-DAQGKTPLYLATELGHTS 148
S + + + + + L +N P D G TPL+ T + +
Sbjct: 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 145
Query: 149 QVCLLLKHKADQHIVDSSGVEPLTLAVEKANA 180
V L+KH +++ D+ G L AV+ N
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177
Score = 48.9 bits (116), Expect = 2e-07
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQV----CLL 153
++ T LH ++ ++L+ +G D G++ L A + + LL
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKAN 179
+ DS L + +
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSG 213
Score = 40.8 bits (95), Expect = 1e-04
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 1/96 (1%)
Query: 50 YLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH-RTYLHQA 108
++ + E + ++ + + N D + T L+ A
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290
Query: 109 VIGNSVMACEYLILNGLKINCPDAQGKTPLYLATEL 144
++ + L+ G + G P+ L
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 56.6 bits (138), Expect = 4e-11
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ D T LH A + L+ G +N G TPL+LA + GH V LLL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 158 ADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD + G P LA + + +IV L
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKL 93
Score = 55.5 bits (135), Expect = 9e-11
Identities = 20/74 (27%), Positives = 27/74 (36%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
+ D T LH A + L+ G +N G TP +LA + GH V LL
Sbjct: 39 SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
Query: 158 ADQHIVDSSGVEPL 171
AD +
Sbjct: 99 ADVNARSWGSSHHH 112
Score = 37.0 bits (87), Expect = 7e-04
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLY 139
+ D T H A + L G +N +
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 59.0 bits (143), Expect = 4e-11
Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 25/178 (14%)
Query: 25 LPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCH 84
LP + + ++ + + +T L +A++ +++ + + LLL A +L +
Sbjct: 33 LPFLQRSKKRLTDSEFKD-PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN 91
Query: 85 ALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD------------- 131
A +T+ +T LH A+ ++ L+ NG +
Sbjct: 92 A-------SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPG 144
Query: 132 -AQGKTPLYLATELGHTSQVCLLLKH---KADQHIVDSSGVEPLTLAVEKANADIVTL 185
G+ PL LA + V LL++ AD DS G L VE A+ +
Sbjct: 145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT 202
Score = 48.2 bits (115), Expect = 3e-07
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 43/181 (23%)
Query: 33 ALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASK 92
++ A + P R + AV ++ +L LL + +
Sbjct: 1 SVSAGEK--PPRLYDRRSIFDAV-AQSNCQELE-SLLPFLQRSKKR----------LTDS 46
Query: 93 DWTNPNDDHRTYLHQAVI---GNSVMACEYLILNGLKI-----------NCPDAQGKTPL 138
++ + + +T L +A++ L+ K +G+T L
Sbjct: 47 EFKD-PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105
Query: 139 YLATELGHTSQVCLLLKHKADQHIVDSSGVE--------------PLTLAVEKANADIVT 184
++A E + + V LL+++ AD + PL+LA IV
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165
Query: 185 L 185
Sbjct: 166 F 166
Score = 47.5 bits (113), Expect = 4e-07
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYLATELGH---------TSQ 149
L A N + ++L+ N + I+ D+ G T L+ E+ TS
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208
Query: 150 VCLLLKHKADQH-------IVDSSGVEPLTLAVEKANADIVTL 185
+L A H I + G+ PL LA ++
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
N T ++ ++ L + +G TPL LA G + +L+ +
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256
Query: 158 ADQHIVDSSGVEPLTLAVEKANAD 181
E A +
Sbjct: 257 IH-------EPECRHAAAHHHHHH 273
Score = 34.8 bits (80), Expect = 0.009
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 12/108 (11%)
Query: 39 DWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPN 98
D + + T LH V V+D + + + S + + ++ A K N
Sbjct: 176 DISARDSVGNTVLHALVE----VADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITN 230
Query: 99 DDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGH 146
T L A + Y++ + A H
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQRE-------IHEPECRHAAAHHHH 271
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 57.6 bits (140), Expect = 1e-10
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L + + + + GA D + T LH A E L+ G I
Sbjct: 81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGG-LTALHMAAGYVRPEVVEALVELGADIEV 139
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
D +G T L LA E+ T+ ++ + V + A++ +
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRR---IGLEKVINVLEGQVFEYAEVDEI 192
Score = 47.2 bits (113), Expect = 5e-07
Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 9/102 (8%)
Query: 84 HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
+G+ + + + ++ +TP + A
Sbjct: 3 VNKIIGSRT-----AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAAR 54
Query: 144 LGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+ LL D VD +G L + V L
Sbjct: 55 KADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRL 95
Score = 38.7 bits (91), Expect = 4e-04
Identities = 15/102 (14%), Positives = 23/102 (22%), Gaps = 24/102 (23%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNG----------------------LKINCPDAQGK 135
++ T L A + G +I +GK
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200
Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
YL + H A+ D L AV +
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED--GLEYAVAE 240
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 56.1 bits (136), Expect = 3e-10
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 102 RTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVC----LLLKHK 157
L A S LI +G I D+ G T L++ + + C LLL +
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 158 AD------QHIVDSSGVEPLTLAVEKANADIVTL 185
+ + ++ G+ P LA + N +
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215
Score = 55.7 bits (135), Expect = 4e-10
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKIN-------------CPDAQGKTPLYLATEL 144
+ +T LH AVI +V L+ G ++ G+ PL A +
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 145 GHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVT 184
G V LL++H AD DS G L + + + N
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171
Score = 55.3 bits (134), Expect = 7e-10
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 103 TYLHQAVIGNSV-MACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKAD-- 159
+ L A N V + L G +++ A G+T L++A + +L++ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 160 ---QHIVDSSGVEPLTLAVEKANADIVTL 185
G L +AV N ++V
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRA 93
Score = 54.1 bits (131), Expect = 2e-09
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKI-----NCPDAQGKTPLYLATELGHTSQVCL 152
T LH A + +++ A L+ ++ +G+T L++A + + V
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 153 LLKHKAD-------------QHIVDSSGVEPLTLAVEKANADIVTL 185
LL A H + G PL+ A + +IV L
Sbjct: 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139
Score = 49.5 bits (119), Expect = 8e-08
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 98 NDDHRTYLHQAVIGNS----VMACEYLILNGLKIN------CPDAQGKTPLYLATELGHT 147
+ T LH ++ + L+ + P+ QG TP LA G+
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210
Query: 148 SQVCLLLKHKADQHIVDSSG 167
L++ +
Sbjct: 211 VMFQHLMQKRKHIAAAHHHH 230
Score = 39.1 bits (92), Expect = 3e-04
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 134 GKTPLYLATELGHTSQVC-LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
++PL LA + + LL + H + G L +A N + +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMV 55
Score = 34.9 bits (81), Expect = 0.008
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 13/93 (13%)
Query: 44 NDDHRTYLHQAVI-GVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHR 102
+ T LH ++ + LLL + PN+
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLL------------SYDGGDHLKSLELVPNNQGL 198
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGK 135
T A + +++ ++L+ I
Sbjct: 199 TPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 50.6 bits (121), Expect = 4e-08
Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 23/154 (14%)
Query: 44 NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
+T L +AV+ + D + LL N + +A +
Sbjct: 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSA------ 93
Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDA-------------QGKTPLYLATELGHTSQV 150
LH A+ S+ + L+ NG ++ G+ PL LA V
Sbjct: 94 -LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152
Query: 151 CLLLKH---KADQHIVDSSGVEPLTLAVEKANAD 181
LL++ A DS G L V A+
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186
Score = 50.2 bits (120), Expect = 6e-08
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 84 HALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATE 143
HAL + A N + L + + L + QG TPL LA +
Sbjct: 177 HALVMIAD------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230
Query: 144 LGHTSQVCLLLKHKAD 159
G +L+ +
Sbjct: 231 EGKIEIFRHILQREFS 246
Score = 48.2 bits (115), Expect = 3e-07
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 19/113 (16%)
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYL-------- 140
K L A YL+ N + + D+ G T L+
Sbjct: 127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186
Query: 141 --------ATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G L + I + G+ PL LA ++ +I
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239
Score = 39.8 bits (93), Expect = 2e-04
Identities = 32/165 (19%), Positives = 47/165 (28%), Gaps = 40/165 (24%)
Query: 48 RTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQ 107
R L V +L LL Y L +T L +
Sbjct: 3 RDRLFSVVSR-GVPEEL-TGLLEYLRWNSKYLTD-----------SAYTEGSTGKTCLMK 49
Query: 108 AVI---GNSVMACEYLI-----------LNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
AV+ L+ L + QG + L++A E V LL
Sbjct: 50 AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109
Query: 154 LKHKADQHIVDSSGVE-------------PLTLAVEKANADIVTL 185
+++ AD H+ PL+LA D+VT
Sbjct: 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154
Score = 28.6 bits (64), Expect = 0.91
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 5/92 (5%)
Query: 44 NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
+ T LH V+ ++ + S L L + ++ N T
Sbjct: 169 DSLGNTVLHALVMIADNSPENSA---LVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLT 223
Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGK 135
L A + +++
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 49.0 bits (117), Expect = 2e-07
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 25/159 (15%)
Query: 38 KDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNP 97
+++ P+ +T L +A++ ++ + + +LL A N+ ++ + +
Sbjct: 38 EEFREPSTG-KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS-------PFRDV 89
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD--------------AQGKTPLYLATE 143
+T LH A+ E L+ G ++ G+ PL LA
Sbjct: 90 YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149
Query: 144 LGHTSQVCLLLKH---KADQHIVDSSGVEPLTLAVEKAN 179
V L ++ +AD DS G L V A+
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188
Score = 48.2 bits (115), Expect = 2e-07
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYLATELGH-- 146
KD L A N YL NG K + D++G T L+ +
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190
Query: 147 -------TSQVCLLLKHKADQH-------IVDSSGVEPLTLAVEKANADIVTL 185
T LLL A ++++ G+ PL +A + I
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243
Score = 38.2 bits (89), Expect = 6e-04
Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 29/122 (23%)
Query: 92 KDWTNPNDDHRTYLHQAVIGNS---VMACEYLILNGLK-----------INCPDAQGKTP 137
+++ P+ +T L +A++ S L+ K +G+T
Sbjct: 38 EEFREPSTG-KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTA 96
Query: 138 LYLATELGHTSQVCLLLKHKADQHIVDSSGVE--------------PLTLAVEKANADIV 183
L++A E V LL++ AD H PL+LA IV
Sbjct: 97 LHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156
Query: 184 TL 185
Sbjct: 157 HY 158
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 16/78 (20%)
Query: 98 NDDHRTYLHQAVIGNSVMAC---------EYLILNGLKINC-------PDAQGKTPLYLA 141
+ T LH V + L++ K+ + G +PL +A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232
Query: 142 TELGHTSQVCLLLKHKAD 159
+ G +++ +
Sbjct: 233 AKTGKIGIFQHIIRREIA 250
Score = 30.5 bits (69), Expect = 0.22
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 44 NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRT 103
+ T LH V ++ + E + L ++ A + N+D +
Sbjct: 173 DSRGNTVLHALVAIADN----TRENTKFVTKMYDLL-LIKCAKLFPDTNLEALLNNDGLS 227
Query: 104 YLHQAVIGNSVMACEYLILNGLKIN 128
L A + +++I +
Sbjct: 228 PLMMAAKTGKIGIFQHIIRREIADA 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 7e-07
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 37/166 (22%)
Query: 2 VATDDVSDLSPELLL--YRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAV-IGV 58
V T + +P L + +T H+ ++ A+A+ + W + R + IGV
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 59 N-----DVSDLSPELLLYRASTVHNLPVMCHALAL-GASK-------DWTN---PNDDHR 102
+ L P +L S +N V L++ ++ + TN P
Sbjct: 309 RCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ- 365
Query: 103 TYLHQAVIGNS----VMACEYLILNGL-----KINCPDA--QGKTP 137
+ +++ N V++ L GL K P Q + P
Sbjct: 366 --VEISLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Score = 33.1 bits (75), Expect = 0.054
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 31/137 (22%)
Query: 54 AVIGVNDVSDLSPELLLYRASTVHNLP----------VMCHALALGASKDWTNPNDDHRT 103
++ V + L E++ YR T+ M A+ + + + +
Sbjct: 1772 SLADVMSIESLV-EVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGRVAASFSQEALQ 1827
Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTS---QVCLLLKHKADQ 160
Y+ + V + E I+N N + Q Y+A G V +L Q
Sbjct: 1828 YVVERVGKRTGWLVE--IVN---YNVENQQ-----YVAA--GDLRALDTVTNVLNFIKLQ 1875
Query: 161 HIVDSSGVEPLTLAVEK 177
I D + +L++E+
Sbjct: 1876 KI-DIIEL-QKSLSLEE 1890
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 43.4 bits (102), Expect = 2e-05
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 118 EYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVD--SSGVEPLTLAV 175
L+ + + A+ LA E GH + L + + + + LA
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 171
Query: 176 EKANADIV 183
E + ++
Sbjct: 172 ENGHLHVL 179
Score = 39.9 bits (93), Expect = 2e-04
Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 3/95 (3%)
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK---TPLYLAT 142
L ++ ++ A + L Q + + A
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207
Query: 143 ELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEK 177
GH + + LL + E V
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242
Score = 35.7 bits (82), Expect = 0.005
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 11/98 (11%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYL--------ILNGLKINCPDAQGKTPLYLATELGHT 147
+ L + N + + + I L LA LG+
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332
Query: 148 SQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LLL + + ++ + D+ +
Sbjct: 333 GACALLLSIPSVLALTKANN---YYINETGGRLDLRAV 367
Score = 34.9 bits (80), Expect = 0.010
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQ---VCLLL 154
N + L + + L + K + + ++A G +S +CLLL
Sbjct: 59 NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG---IKSEVICFVAAITGCSSALDTLCLLL 115
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIV 183
++ + + LA E + ++
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVL 144
Score = 29.1 bits (65), Expect = 0.84
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
D L A+ + AC L+ + Y+ G + L+H
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEHH 372
Query: 158 ADQH 161
H
Sbjct: 373 HHHH 376
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.087
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 59 NDVSDLSPELLLYRASTVHNLPVMCHALALGAS 91
+ L L LY + P ALA+ A+
Sbjct: 20 QALKKLQASLKLYADDSA---P----ALAIKAT 45
Score = 30.3 bits (67), Expect = 0.23
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 7 VSDLSPELLLYRASTVHNLPVMCHALALGAS 37
+ L L LY + P ALA+ A+
Sbjct: 22 LKKLQASLKLYADDSA---P----ALAIKAT 45
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active
enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP:
b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Length = 508
Score = 27.3 bits (60), Expect = 3.2
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 159 DQHIVDSSGVEPLTLAVEKANADIVTL 185
+++D++ L V +++ DI ++
Sbjct: 9 SAYVIDTNAPNQLKFTVSRSSCDITSI 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 26.2 bits (57), Expect = 6.7
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 20/84 (23%)
Query: 47 HRTYLHQAVIGVNDVSDLSPELL----LYRASTVHNLPVMCHALALGASKDWTNPNDDHR 102
R YL+ N V + P ++ + A V V +
Sbjct: 88 KRFYLN------NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKAL- 140
Query: 103 TYLHQAVIGNSVMACEYLILNGLK 126
++ E L++ L
Sbjct: 141 ---------EQILEYELLLIQQLN 155
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 26.1 bits (58), Expect = 7.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 54 AVIGVNDVSDLSPELLLYRASTVHNLPV 81
++GV +++L P+LL + V
Sbjct: 463 RLLGVTSIAELKPDLLDLSTLKARTVGV 490
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Length = 100
Score = 25.2 bits (56), Expect = 7.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 163 VDSSGVEPLTLAVEKAN---ADIVT 184
D+ GVEP ++ N D
Sbjct: 45 ADTEGVEPTYHVLDLQNVLREDKAI 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.401
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,783,557
Number of extensions: 153400
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 266
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.3 bits)