RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6300
(185 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 63.8 bits (154), Expect = 6e-13
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHI 162
T LH A + + L+ G N + + +TPL++A GHT LL++KA +
Sbjct: 2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61
Query: 163 VDSSGVEPLTLAVEKANADIVTL 185
PL A + ++V L
Sbjct: 62 KAKDDQTPLHCAARIGHTNMVKL 84
Score = 62.3 bits (150), Expect = 2e-12
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ + ++PV + G D T LH A ++ ++L+ + +N
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDA--TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 325
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
G +PL+ A + GHT V LLLK+ A + V S G PL +A + +
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 381
Score = 57.3 bits (137), Expect = 1e-10
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINC 129
L+ AS + +LP++ + L GAS + +N T LH A +YL+ N K+N
Sbjct: 4 LHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61
Query: 130 PDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLA 174
+TPL+ A +GHT+ V LLL++ A+ ++ ++G PL +A
Sbjct: 62 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106
Score = 52.3 bits (124), Expect = 6e-09
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 18/184 (9%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVN--------------DV 61
L+ AS + +LP++ + L GAS + +N T LH A + +
Sbjct: 4 LHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61
Query: 62 SDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLI 121
+ L+ A+ + + ++ L A + T LH A V L+
Sbjct: 62 KAKDDQTPLHCAARIGHTNMVKLLLENNA--NPNLATTAGHTPLHIAAREGHVETVLALL 119
Query: 122 LNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANAD 181
C +G TPL++A + G LLL+ A + +G+ PL +AV N D
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179
Query: 182 IVTL 185
IV L
Sbjct: 180 IVKL 183
Score = 50.4 bits (119), Expect = 3e-08
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 2/158 (1%)
Query: 26 PVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHA 85
P + L+ A+ + V
Sbjct: 92 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151
Query: 86 LALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELG 145
L A + T LH AV N++ + L+ G + P G TPL++A +
Sbjct: 152 LERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 209
Query: 146 HTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
LL++ + GV PL LA ++ +A++V
Sbjct: 210 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 247
Score = 49.6 bits (117), Expect = 4e-08
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ LHQA L+ NG N + G TPL +A LG+ S +L
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382
Query: 154 ---LKHKADQHIVDSSGVE 169
+ + D +
Sbjct: 383 KVVTDETSFVLVSDKHRMS 401
Score = 41.5 bits (96), Expect = 2e-05
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
+ + + L+ A +NL ++ L G +P + T LH A N V
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARS 216
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ G N QG TPL+LA + GH V LLL +A+ ++ + SG+ PL L ++ +
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 276
Query: 180 ADIVTL 185
+ +
Sbjct: 277 VPVADV 282
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 58.1 bits (139), Expect = 4e-11
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 42 NPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH 101
+ +RT LH +I A+ + L ++ + ++ + ++
Sbjct: 172 LEDSMNRTILHHIIITSGMTG--------CSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223
Query: 102 RTYLHQAVIGNSVMACEYLILNGLK---INCPDAQGKTPLYLATELGHTSQVCLLLKHKA 158
+ + E L L + +N D+ G T L +A LG+ S V LL + A
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283
Query: 159 DQHIVDSSGVEPLTLAV 175
D I + SG+ P+
Sbjct: 284 DPFIANKSGLRPVDFGA 300
Score = 39.3 bits (90), Expect = 1e-04
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCP-DAQGKTPLYLATELGHTSQVCLLLKH 156
++ H + + L +N P D G TPL+ T + + V L+KH
Sbjct: 70 GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 129
Query: 157 KADQHIVDS 165
+++ D+
Sbjct: 130 GSNRLYGDN 138
Score = 36.2 bits (82), Expect = 0.001
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 9/173 (5%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
L+ +++ NL ++ H + G+ + ++ + L +AV VN+ + E LL
Sbjct: 111 LHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168
Query: 76 VHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK 135
L + L + A ++ + I + +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCS----AAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224
Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIV---DSSGVEPLTLAVEKANADIVTL 185
+ S + L +++ DS+G L +A N IV
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277
Score = 33.9 bits (76), Expect = 0.007
Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 5/140 (3%)
Query: 45 DDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDH-RT 103
+ N S+ + + +L + + P D+H T
Sbjct: 50 EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 109
Query: 104 YLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH----KAD 159
LH ++ ++L+ +G D G++ L A + +
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169
Query: 160 QHIVDSSGVEPLTLAVEKAN 179
+ DS L + +
Sbjct: 170 LILEDSMNRTILHHIIITSG 189
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 54.9 bits (130), Expect = 4e-10
Identities = 27/161 (16%), Positives = 51/161 (31%)
Query: 23 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVM 82
A + + +P A ++ + L +
Sbjct: 66 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125
Query: 83 CHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLAT 142
L + R+ L AV NS+ + L+ +G +N G + L+ A+
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185
Query: 143 ELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIV 183
G V L++ AD + + PL +A + DI+
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226
Score = 36.0 bits (81), Expect = 0.001
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 99 DDHRTYLHQAVIGNSVMACEYLI----LNGLKINCPDAQGKTPLYLATELGHTSQVC 151
+D T LH AV+ ++ A L+ G +++ + +TPL+LA S V
Sbjct: 1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 57
Score = 32.9 bits (73), Expect = 0.013
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 134 GKTPLYLATELGHTSQVCLLLK----HKADQHIVDSSGVEPLTLAVEK 177
G TPL++A G+ V L+ + I ++ PL LAV
Sbjct: 3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 54.3 bits (129), Expect = 1e-09
Identities = 20/82 (24%), Positives = 29/82 (35%)
Query: 96 NPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
T LH A + LI +N D G TPL+ A G +L++
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Query: 156 HKADQHIVDSSGVEPLTLAVEK 177
+ D V+ G +A E
Sbjct: 254 NLCDMEAVNKVGQTAFDVADED 275
Score = 41.6 bits (96), Expect = 2e-05
Identities = 18/92 (19%), Positives = 32/92 (34%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
D + A ++L + G T L++A G+T + LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
++ + D +I D G PL A + +
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Score = 38.5 bits (88), Expect = 2e-04
Identities = 16/73 (21%), Positives = 26/73 (35%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK 157
D A L+ G IN + G T L+ A + V L+++
Sbjct: 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 158 ADQHIVDSSGVEP 170
A+ + D+ G P
Sbjct: 97 ANINQPDNEGWIP 109
Score = 35.9 bits (81), Expect = 0.002
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A G T +V LL+ AD + + G+ L A N D+V
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 53.0 bits (126), Expect = 2e-09
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 77 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGK 135
+ L GA + + +T L AV + + L+ ++IN D+ GK
Sbjct: 197 DVEAITHLLLDHGADVNVRG--ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254
Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIVD 164
T L LA EL LL K A D
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 52.3 bits (124), Expect = 4e-09
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 15/174 (8%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRAST 75
A+ + + GA+ + + + L A+
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKED-----------QERLRKGGATALMDAAE 157
Query: 76 VHNLPVMCHALA-LGASKDWTNPNDDHRTYLHQAVIGNSVMA--CEYLILNGLKINCPDA 132
++ V+ L +GA + + + +S + L+ +G +N
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 133 QGKTPLYLATELGHTSQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKANADIVTL 185
+GKTPL LA E H V LL+ + + + DS G L LAVE I L
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271
Score = 39.6 bits (91), Expect = 1e-04
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ-GKTPLYLATELGHTSQVCLLLKHKA 158
+ L +AV V + L+ G +N + + G TPL+ A ++ V LLL+H A
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 159 DQHIVDSSGVEPLTLAV 175
D + +G P LA
Sbjct: 64 DPVLRKKNGATPFLLAA 80
Score = 34.6 bits (78), Expect = 0.004
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 133 QGKTPLYLATELGHTSQVCLLLKHKADQHIVDS-SGVEPLTLAVEKANADIV 183
+ L A + V LL+ A+ + + G PL AV+ + DIV
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 53.2 bits (126), Expect = 2e-09
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 69 LLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
L Y A + V G+ + ++D +T + A + YLI G +
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGS--NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHK 157
DA T LA H + V + + +
Sbjct: 249 AVDATDHTARQLAQANNHHNIVDIFDRCR 277
Score = 52.8 bits (125), Expect = 2e-09
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLIL-NGLKINCPDAQGKTPLYLATELGHTSQVC 151
+ RT LH A +++ +YL+ G + D GKTP+ LA + G V
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238
Query: 152 LLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
L++ A VD++ LA + +IV +
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272
Score = 34.7 bits (78), Expect = 0.004
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 103 TYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHK----- 157
LH G+ + E + + I P +T L+ + L+ H+
Sbjct: 4 IKLHTEAAGSYAI-TEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECI 61
Query: 158 ---ADQHIVDSSGVEPL 171
AD + +D PL
Sbjct: 62 AAGADVNAMDCDENTPL 78
Score = 30.9 bits (68), Expect = 0.067
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 80 PVMCHALALGA-------SKDWTNPND--DHRTYLHQAVIGNSVMACEYLILNGLK---- 126
P+ H A G+ +++ N D +RT LH +S E LI++ K
Sbjct: 3 PIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62
Query: 127 ----INCPDAQGKTPLY 139
+N D TPL
Sbjct: 63 AGADVNAMDCDENTPLM 79
Score = 26.6 bits (57), Expect = 1.7
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 135 KTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
++P+ L TE + + + ++ I L ++A+
Sbjct: 1 ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSED 51
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 48.5 bits (114), Expect = 7e-08
Identities = 18/67 (26%), Positives = 23/67 (34%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
RT LH AV + E L+ G G+TPL A + LL
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Query: 154 LKHKADQ 160
H A +
Sbjct: 245 RAHGAPE 251
Score = 43.2 bits (100), Expect = 5e-06
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNG---LKINCPDAQGKTPLYLATELGHTSQVCLLL 154
+D T LH AVI ++L+ ++ + G+T L+LA LG S V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 155 KHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
A + + G L LA +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACV 96
Score = 38.9 bits (89), Expect = 2e-04
Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 4/149 (2%)
Query: 37 SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTN 96
++P D TYL Q+ D S + + N
Sbjct: 99 QPRPSHPRDASDTYLTQSQDCTPDTSHA---PAAVDSQPNPENEEEPRDEDWRLQLEAEN 155
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKH 156
+ ++ ++ G+TPL+LA E S + LLLK
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 157 KADQHIVDSSGVEPLTLAVEKANADIVTL 185
AD G PL A+ + N + L
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARL 243
Score = 24.7 bits (52), Expect = 7.8
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 77 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKIN 128
V+ L GA D T RT L A++ + + L +G
Sbjct: 203 QAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 48.0 bits (113), Expect = 1e-07
Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 17/186 (9%)
Query: 14 LLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIG--------------VN 59
L++ + L + ++ S T + D RT LH A
Sbjct: 5 LMVCNLAYSGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63
Query: 60 DVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEY 119
+ D + L+ A++ ++ L GA + N + T LH A N
Sbjct: 64 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN--QNGCTPLHYAASKNRHEIAVM 121
Query: 120 LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQHIVDSSGVEPLTLAVEKAN 179
L+ G + D T ++ A G+ + +LL +KA +I D+ G PL LA ++
Sbjct: 122 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181
Query: 180 ADIVTL 185
+ L
Sbjct: 182 VEEAKL 187
Score = 40.3 bits (93), Expect = 4e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 97 PNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLK 155
+ + T LH A V + L+ G I + + KTPL +A G + +++
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 46.7 bits (109), Expect = 3e-07
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D ++ +T LH A N+ A L+++ + D + +TPL+LA G
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174
Query: 153 LLKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LL + A++ I D P +A E+ + DIV L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRL 207
Score = 45.6 bits (106), Expect = 6e-07
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 3/114 (2%)
Query: 40 WTNPNDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHALALGASKDWTNPND 99
+ L A +N + L + A+ + V + +D
Sbjct: 98 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL---MHHANRDAQDD 154
Query: 100 DHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
T L A S A + L+ N D + P +A+E H V LL
Sbjct: 155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208
Score = 32.1 bits (71), Expect = 0.025
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 118 EYLILNGLKINC-PDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
L+ G ++N D G+T L+LA LL AD +
Sbjct: 6 SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN 50
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 43.0 bits (99), Expect = 5e-06
Identities = 15/67 (22%), Positives = 22/67 (32%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ RT LH AV + L+ G +N QG +P L T L
Sbjct: 138 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 197
Query: 154 LKHKADQ 160
+ +
Sbjct: 198 GQLTLEN 204
Score = 41.8 bits (96), Expect = 2e-05
Identities = 21/92 (22%), Positives = 33/92 (35%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ H ++ G + + L G+T L+LA +L + V LL
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
LK AD + V G P L + + I
Sbjct: 165 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 196
Score = 32.9 bits (73), Expect = 0.013
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 100 DHRTYLHQAVIGNSVMAC----EYLILNGLKINCPDAQGKTPLYLATELGHTSQVC 151
D ++LH A+I + + +N + +TPL+LA
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 56
Score = 30.2 bits (66), Expect = 0.12
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 134 GKTPLYLATELGHTSQVCLLLK----HKADQHIVDSSGVEPLTLA 174
G + L+LA + +++ A + ++ PL LA
Sbjct: 2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46
Score = 26.0 bits (55), Expect = 2.7
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK 126
L+ A + N ++ L GA D + S + L L+
Sbjct: 149 LHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 42.6 bits (99), Expect = 1e-05
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 98 NDDHRTYLHQAVIGNSVMACEY---LILNGLKINCPDAQGKTPLYLATELGHTSQVCLLL 154
A I A + L+ + + A+ LA E GH + L
Sbjct: 87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146
Query: 155 KHKADQHIVDSS--GVEPLTLAVEKANADIVTL 185
+ + + LA E + ++
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 179
Score = 37.9 bits (87), Expect = 4e-04
Identities = 19/177 (10%), Positives = 40/177 (22%), Gaps = 13/177 (7%)
Query: 16 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVI--GVNDVSDLSPELLLYRA 73
A+ +L V+ L ++ ++ A + G ++V + + + A
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224
Query: 74 STVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQ 133
+ N + + L
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG------VFDLVTKSECLQGFY 278
Query: 134 GKTPLYLATELGHTSQVCLLLKHKADQ-----HIVDSSGVEPLTLAVEKANADIVTL 185
L + + LL + + E L LA+ N L
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 335
Score = 32.9 bits (74), Expect = 0.015
Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 5/70 (7%)
Query: 92 KDWTNPNDDHRTYLHQAVIGNSVMACEYLI-----LNGLKINCPDAQGKTPLYLATELGH 146
K L + + +L+ L LA LG+
Sbjct: 270 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329
Query: 147 TSQVCLLLKH 156
LLL
Sbjct: 330 QGACALLLSI 339
Score = 30.6 bits (68), Expect = 0.088
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 6/125 (4%)
Query: 67 ELLLYRASTVHNLPVMCHALALGASKDWTN-PNDDHRTYLHQAVIGNSVMACEYLILNGL 125
E++ + A+ + L S + ++ A + L
Sbjct: 91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150
Query: 126 KINCPD--AQGKTPLYLATELGHTSQVCLLLKHKA---DQHIVDSSGVEPLTLAVEKANA 180
A+ LA E GH + L + I + AV + +
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210
Query: 181 DIVTL 185
+++
Sbjct: 211 NVINF 215
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 38.8 bits (89), Expect = 8e-05
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 22/149 (14%)
Query: 16 LYRASTVHNLPVMCHALALGA----SKDWTNPNDDHRTYLHQAVIGVNDVSDLSPELLLY 71
L A ++ + A A G N ++ T LH AV
Sbjct: 10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV---------------- 53
Query: 72 RASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPD 131
R+ +L ++ + + T LH + ++ + L+ I +
Sbjct: 54 RSVDRTSLHIVDFLVQNSG--NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 111
Query: 132 AQGKTPLYLATELGHTSQVCLLLKHKADQ 160
G+TPL +A L H LL + + +
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQALSGR 140
Score = 29.6 bits (65), Expect = 0.13
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 98 NDDHRTYLHQAVIGNSVMACEYLILNGLKINCP------DAQGKTPLYL---ATELGHTS 148
L +AV + +G+ + +T L+L + +
Sbjct: 3 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62
Query: 149 QVCLLLKHKADQH 161
V L+++ +
Sbjct: 63 IVDFLVQNSGNLD 75
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 37.1 bits (84), Expect = 5e-04
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 77 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLK-INCPDAQGK 135
+ + ++ LH+A S+ E L G +N D QG
Sbjct: 114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 173
Query: 136 TPLYLATELGHTSQVCLLL-KHKADQHIVDSSGVEPLTLAVEKANADI 182
TPL+ A GH LL+ K+ A+ +VD+ G + +A+ +
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 221
Score = 36.7 bits (83), Expect = 8e-04
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 105 LHQAVI-GNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLLLKHKADQH 161
LHQA + E L + D G+ PL+ + LL + +
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61
Score = 35.6 bits (80), Expect = 0.002
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 70 LYRASTVHNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILN-GLKIN 128
L+RA++V +L ++ LG S + T L A+ A L+ G + +
Sbjct: 142 LHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 200
Query: 129 CPDAQGKTPLYLATELGHTSQVCLLLKHKAD 159
D +G +A + L + D
Sbjct: 201 LVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228
Score = 31.7 bits (70), Expect = 0.034
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 136 TPLYLATELGHTSQVCLLLKHK-ADQHIVDSSGVEPLTLAVEKAN 179
PL+ A +V LL K + D G PL +V
Sbjct: 2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 36.3 bits (82), Expect = 7e-04
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
P+ +H AV +L ++ DA+G TPL LA + G V +L
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 154 LKH 156
H
Sbjct: 153 QGH 155
Score = 32.1 bits (71), Expect = 0.022
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+ + +H A + + L+ +G +N PD G P++LA + GHT+ V L
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+D H D+ G+ PL LA+++ D+V +
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRGAQDLVDI 151
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 35.6 bits (80), Expect = 0.001
Identities = 14/61 (22%), Positives = 22/61 (36%)
Query: 93 DWTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCL 152
D + T LH A N E LI G ++ KT ++ + G+ +
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 153 L 153
L
Sbjct: 152 L 152
Score = 34.4 bits (77), Expect = 0.003
Identities = 25/92 (27%), Positives = 37/92 (40%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
RT LH A E L+ +G +N D T L+ ATE H V LL
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 154 LKHKADQHIVDSSGVEPLTLAVEKANADIVTL 185
+K+ AD H ++++ N D+ +
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 27.5 bits (59), Expect = 0.80
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 136 TPLYLATELGHTSQVCLLLKHKAD 159
L A G +V +L+ + A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAP 27
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 34.1 bits (76), Expect = 0.004
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
N+ + A G+ + + + + +G T LA G V L+
Sbjct: 93 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152
Query: 154 LKH 156
+
Sbjct: 153 QAN 155
Score = 28.7 bits (62), Expect = 0.24
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 136 TPLYLATELGHTSQVCLLLKHKADQHIVDSSG 167
L A G Q+ LL++ + + + G
Sbjct: 3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34
Score = 24.8 bits (52), Expect = 5.0
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 77 HNLPVMCHALALGASKDWTNPNDDHRTYLHQAVIGNSVMACEYLILNG 124
+ L + + + N T A + + NG
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 27.2 bits (58), Expect = 0.67
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGKTPLYLATELGHTSQVCLL 153
+H A + L G +++ DA G+ P+ LA ELGH L
Sbjct: 62 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121
Query: 154 L 154
Sbjct: 122 R 122
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal
domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 250
Score = 27.5 bits (61), Expect = 0.88
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 159 DQHIVDSSGVEPLTLAVEKANADIVTL 185
+++D++ L V +++ DI ++
Sbjct: 9 SAYVIDTNAPNQLKFTVSRSSCDITSI 35
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 25.8 bits (55), Expect = 2.1
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 94 WTNPNDDHRTYLHQAVIGNSVMACEYLILNGLKINCPDAQGK---TPLYLATELGHTSQV 150
+ D T LH A N+V C++L+ +G + E G+T
Sbjct: 60 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119
Query: 151 CLLLKHKA 158
L +
Sbjct: 120 QFLYGVQE 127
>d1pvc1_ b.121.4.1 (1:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 279
Score = 25.2 bits (55), Expect = 5.3
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 130 PDAQGKTPLYLATELGHTSQV----CLLLKHKADQHIVDSSGVE 169
P + P A E G T+ + + +H + S +E
Sbjct: 12 PAHSKEVPALTAVETGATNPLAPSDTVQTRHVVQRRSRSESTIE 55
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 284
Score = 24.8 bits (54), Expect = 6.2
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 130 PDAQGKTPLYLATELGHTSQV----CLLLKHKADQHIVDSSGVE 169
P P A E GHTSQV + +H + H S VE
Sbjct: 22 PSNSASVPALTAVETGHTSQVTPSDTMQTRHVKNYHSRSESTVE 65
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 24.9 bits (54), Expect = 6.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 162 IVDSSGVEPLTLAVEKANADIVTL 185
+V G+ + V KANADI+ +
Sbjct: 605 LVAEIGIGTIAAGVAKANADIIQI 628
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus A
2 (HRV-2) [TaxId: 12130]}
Length = 269
Score = 24.8 bits (54), Expect = 7.2
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 130 PDAQGKTPLYLATELGHTSQV----CLLLKHKADQHIVDSSGVE 169
P P A E GHTS V + ++ D +E
Sbjct: 11 PTTSNSAPALDAAETGHTSSVQPEDVIETRYVQTSQTRDEMSLE 54
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 24.6 bits (52), Expect = 8.0
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 44 NDDHRTYLHQAVIGVNDVSDLSPELLLYRASTVHNLPVMCHAL-------ALGASKDWTN 96
N ++R H + +N D++ E + N + S DW
Sbjct: 46 NQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWRE 105
Query: 97 PNDDH 101
Sbjct: 106 KGYVT 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.401
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 663,750
Number of extensions: 27288
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 79
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)