BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6303
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 65 NVRLSRRRQATIWGGASLVTILLDSMQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLS 124
NV ++ + ++ ++ + V L+ M+ L W +++NLS D+P+KTN +V L
Sbjct: 138 NVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLK 197
Query: 125 ANRDKNFVKSHGRQVHRFISKQGLDKSFVECEARMWRVGDRTLPQGIVMDGGSGTGWLLS 184
+ +N +++ ++ ++ K + + ++ G P + SG+ + +
Sbjct: 198 CSTGENNLETEKMPPNK---EERWKKRYAVVDGKLTNTGIVKAPPPLKTPLFSGSAYFV- 253
Query: 185 PIFVSYVASPEKDELVRGLLNPIQSTPLLPAELL 218
+ YV ++E ++ L+ Q T P E L
Sbjct: 254 -VTREYVGYVLENENIQKLMEWAQDT-YSPDEFL 285
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 70/154 (45%), Gaps = 6/154 (3%)
Query: 65 NVRLSRRRQATIWGGASLVTILLDSMQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLS 124
NV ++ + ++ ++ + V L+ M+ L W +++NL D+P+KTN +V L
Sbjct: 138 NVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLK 197
Query: 125 ANRDKNFVKSHGRQVHRFISKQGLDKSFVECEARMWRVGDRTLPQGIVMDGGSGTGWLLS 184
+ +N +++ ++ ++ K + + ++ G P + SG+ + +
Sbjct: 198 CSTGENNLETEKMPPNK---EERWKKRYAVVDGKLTNTGIVKAPPPLKTPLFSGSAYFV- 253
Query: 185 PIFVSYVASPEKDELVRGLLNPIQSTPLLPAELL 218
+ YV ++E ++ L+ Q T P E L
Sbjct: 254 -VTREYVGYVLENENIQKLMEWAQDT-YSPDEFL 285
>pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
pdb|2RAI|B Chain B, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
Length = 392
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 217 LLMEQLANAG-----IVMDGGSDWLVLSRSFVSYVASPEKDELVRGLLTLFKYTLLPA 269
LL +QLA IV D G W+ + +F VA P K GL + +Y L P
Sbjct: 17 LLAKQLAKPKEKIPIIVGDYGPXWVYPTSTFDCVVADPRKGSKXYGLKSYIEYQLTPT 74
>pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin
9
pdb|2RAK|A Chain A, Pi(3)p Bound Px-Bar Membrane Remodeling Unit Of Sorting
Nexin 9
Length = 392
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 217 LLMEQLANAG-----IVMDGGSDWLVLSRSFVSYVASPEKDELVRGLLTLFKYTLLPA 269
LL +QLA IV D G W+ + +F VA P K + GL + +Y L P
Sbjct: 17 LLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPT 74
>pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221
Length = 366
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 227 IVMDGGSDWLVLSRSFVSYVASPEKDELVRGLLTLFKYTLLPA 269
IV D G W+ + +F VA P K GL + +Y L P
Sbjct: 6 IVGDYGPXWVYPTSTFDCVVADPRKGSKXYGLKSYIEYQLTPT 48
>pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|B Chain B, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|C Chain C, Crystal Structure Of Snx9px-Bar (230-595), H32
Length = 366
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 227 IVMDGGSDWLVLSRSFVSYVASPEKDELVRGLLTLFKYTLLPA 269
IV D G W+ + +F VA P K + GL + +Y L P
Sbjct: 6 IVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPT 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,650,660
Number of Sequences: 62578
Number of extensions: 303222
Number of successful extensions: 651
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 6
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)