Query psy6303
Match_columns 270
No_of_seqs 125 out of 773
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 22:58:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 3.9E-41 1.3E-45 318.3 16.3 190 15-270 93-283 (391)
2 1qg8_A Protein (spore coat pol 82.4 14 0.00048 30.4 11.0 111 15-134 10-124 (255)
3 3bcv_A Putative glycosyltransf 77.7 24 0.00081 28.6 10.8 97 15-125 14-111 (240)
4 2z86_A Chondroitin synthase; G 59.8 1E+02 0.0035 29.2 12.4 107 14-134 383-490 (625)
5 2d7i_A Polypeptide N-acetylgal 53.1 53 0.0018 31.3 9.0 106 5-127 116-225 (570)
6 1iio_A Conserved hypothetical 42.1 6.8 0.00023 28.4 0.6 38 72-124 42-79 (84)
7 3nyi_A FAT acid-binding protei 41.7 1.8E+02 0.006 25.4 10.3 87 15-127 67-159 (297)
8 1ezi_A CMP-N-acetylneuraminic 40.9 75 0.0026 25.8 7.1 58 65-126 65-122 (228)
9 1xhb_A Polypeptide N-acetylgal 38.2 2.3E+02 0.0078 25.7 11.3 99 16-127 39-143 (472)
10 3lup_A DEGV family protein; PS 30.7 1.1E+02 0.0039 26.5 6.8 94 15-133 66-161 (285)
11 1pzx_A Hypothetical protein AP 28.5 2.9E+02 0.0098 23.9 10.0 87 15-127 64-156 (289)
12 3f1y_A Mannosyl-3-phosphoglyce 28.4 2.7E+02 0.0093 25.0 9.2 110 15-134 103-216 (387)
13 2opa_A Probable tautomerase YW 27.1 1.2E+02 0.0041 19.0 4.9 42 3-47 1-44 (61)
14 2dt8_A DEGV family protein; fa 25.7 1.9E+02 0.0066 24.8 7.4 87 15-127 63-150 (280)
15 3kan_A D-dopachrome tautomeras 24.1 1.4E+02 0.0047 22.1 5.4 45 3-47 55-101 (117)
16 2aal_A Malonate semialdehyde d 23.9 1.3E+02 0.0044 22.5 5.3 44 3-48 65-110 (131)
17 3ckj_A Putative uncharacterize 23.5 2.6E+02 0.0088 24.1 7.9 108 15-134 57-168 (329)
18 2z86_A Chondroitin synthase; G 23.4 4.6E+02 0.016 24.5 11.6 103 14-128 101-204 (625)
19 2vsh_A TARI, 2-C-methyl-D-eryt 23.2 1.3E+02 0.0045 24.1 5.6 50 75-125 79-130 (236)
20 1otf_A 4-oxalocrotonate tautom 22.4 1.5E+02 0.0051 18.5 4.9 30 17-46 12-43 (62)
21 1qwj_A Cytidine monophospho-N- 22.1 3.1E+02 0.011 22.0 7.9 26 99-125 94-119 (229)
22 3pl5_A SMU_165, putative uncha 21.8 4.1E+02 0.014 23.4 9.9 91 16-132 99-195 (320)
23 3m21_A Probable tautomerase HP 21.5 1.7E+02 0.0059 18.9 5.0 45 3-47 1-47 (67)
24 3fys_A Protein DEGV; fatty aci 21.4 4.2E+02 0.014 23.3 10.4 95 16-135 98-194 (315)
25 3egl_A DEGV family protein; al 20.6 4E+02 0.014 22.8 10.4 92 14-129 43-136 (277)
26 4fix_A UDP-galactofuranosyl tr 20.6 2.6E+02 0.0088 27.2 7.9 106 14-129 188-299 (657)
27 1hfo_A Migration inhibitory fa 20.5 1.8E+02 0.0062 20.8 5.4 44 3-47 55-100 (113)
28 1jsd_A Haemagglutinin (HA1 cha 20.2 63 0.0021 29.0 3.0 40 98-137 74-119 (319)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=3.9e-41 Score=318.29 Aligned_cols=190 Identities=23% Similarity=0.344 Sum_probs=152.4
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHH-HHHhhccCCCeEEecccceeeeCchhHHHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRE-LLSLELRLPNVRLSRRRQATIWGGASLVTILLDSMQQL 93 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~-~~~~~~~~~nV~~~~~r~~v~WGg~S~v~A~l~ll~~a 93 (270)
|+++++++||++++ |+|+|.||||+|+|++..+.+ +.++..+++||+|+++|..|.|||+|||+|+++||+.|
T Consensus 93 h~d~~~l~rll~~l------y~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l~ll~~a 166 (391)
T 2gak_A 93 HHKIEMLDRLLRAI------YMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDL 166 (391)
T ss_dssp CSCHHHHHHHHHHH------CCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH------hCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHHHHHHHHHH
Confidence 45789999999999 999999999999999876554 34466789999999889999999999999999999999
Q ss_pred HhcCCCccEEEeccCCcccccChHHHHHHHhcCCCCceeecccCCccceeeeccCcchhhhhccceeeeccccCCcceee
Q psy6303 94 LESGWRWDFIVNLSESDYPVKTNRALVDFLSANRDKNFVKSHGRQVHRFISKQGLDKSFVECEARMWRVGDRTLPQGIVM 173 (270)
Q Consensus 94 l~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~g~~Fi~~~~~~~~~~~~~~~~~r~~~~~~~~~~r~~~r~~~~~~~~ 173 (270)
++...+|+|||||||+||||+|+++|++||+.++|+|||++...+. |. . .|.. ..|.+.
T Consensus 167 L~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~--~~--~--~R~~-----~~~~~~---------- 225 (391)
T 2gak_A 167 YRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPP--NK--E--ERWK-----KRYAVV---------- 225 (391)
T ss_dssp HHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCG--GG--S--HHHH-----EEEEEE----------
T ss_pred HhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCc--cc--c--cceE-----eeeecc----------
Confidence 9877799999999999999999999999999999999999986532 11 0 1110 001110
Q ss_pred cCCCCccccccccccceecCcchhHHhhhcccccccCCCChhHHHHHhhhcCceeeeccccceeecHhHHHHhcCCCcch
Q psy6303 174 DGGSGTGWLLSPIFVSYVASPEKDELVRGLLNPIQSTPLLPAELLMEQLANAGIVMDGGSDWLVLSRSFVSYVASPEKDE 253 (270)
Q Consensus 174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qk~~~~~~~~~~~r~~~~~i~~~~GSqW~sLtr~~v~yil~~~~~~ 253 (270)
+.+ + .....++++ .|.++++++|||||+|||++|+||++ +.
T Consensus 226 ~~~-------------l------------~~~~~~k~~-----------~P~~~~~~~GSqW~~LtR~~v~~vl~---d~ 266 (391)
T 2gak_A 226 DGK-------------L------------TNTGIVKAP-----------PPLKTPLFSGSAYFVVTREYVGYVLE---NE 266 (391)
T ss_dssp TTE-------------E------------EEEEEECCC-----------CSCSSCCEECCSCCEEEHHHHHHHHH---CH
T ss_pred ccc-------------e------------eeecccccC-----------CccccceecccceeEecHHHHHHHHh---CC
Confidence 000 0 001123332 35678999999999999999999999 45
Q ss_pred hHHHHHHHhcccCCCCC
Q psy6303 254 LVRGLLTLFKYTLLPAE 270 (270)
Q Consensus 254 ~~~~~~~~f~~t~~PDE 270 (270)
..+++++||++|++|||
T Consensus 267 ~~~~~~~~~k~t~~pDE 283 (391)
T 2gak_A 267 NIQKLMEWAQDTYSPDE 283 (391)
T ss_dssp HHHHHHHHHTTSSSGGG
T ss_pred cHHHHHHHHcCCcCCch
Confidence 56899999999999998
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=82.43 E-value=14 Score=30.43 Aligned_cols=111 Identities=8% Similarity=0.046 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCCCeEEecccce---eeeCchhHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLPNVRLSRRRQA---TIWGGASLVTILLDSMQ 91 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~nV~~~~~r~~---v~WGg~S~v~A~l~ll~ 91 (270)
|+..+.|.+.+.+|... ..|+..++| ||-.|++.-.++.+.....++|.++..... ..+...+...|--.+++
T Consensus 10 yn~~~~l~~~l~Sl~~q---~~~~~eiiv-vDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~ 85 (255)
T 1qg8_A 10 YNKSDYVAKSISSILSQ---TFSDFELFI-MDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIE 85 (255)
T ss_dssp SSCTTTHHHHHHHHHTC---SCCCEEEEE-EECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc---cCCceEEEE-EECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHH
Confidence 44567788888888321 234445555 444444333333332223788988864310 01123345555555565
Q ss_pred HHHhcCCCccEEEeccCCcccccC-hHHHHHHHhcCCCCceeec
Q psy6303 92 QLLESGWRWDFIVNLSESDYPVKT-NRALVDFLSANRDKNFVKS 134 (270)
Q Consensus 92 ~al~~~~~~dy~~lLSg~D~Plks-~~~i~~fl~~~~g~~Fi~~ 134 (270)
.| .-+|+..|.+.|++-.. .+.+.+.++.+++...+..
T Consensus 86 ~a-----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~ 124 (255)
T 1qg8_A 86 MA-----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYS 124 (255)
T ss_dssp HC-----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEE
T ss_pred Hc-----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEe
Confidence 54 35899999999997533 4566667777766666654
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=77.65 E-value=24 Score=28.62 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCCCeEEecccceeeeCchhHHHHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLPNVRLSRRRQATIWGGASLVTILLDSMQQLL 94 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~nV~~~~~r~~v~WGg~S~v~A~l~ll~~al 94 (270)
|+.++.|.+.+.+|... ..++..+.|--|...+.....+.++....++|.++... + +| ...|--.+++.|
T Consensus 14 yn~~~~l~~~l~Sl~~q---~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~---n-~G--~~~a~N~g~~~a- 83 (240)
T 3bcv_A 14 YNVEKYLDQCVQALLAQ---TLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKK---N-AG--LGMACNSGLDVA- 83 (240)
T ss_dssp SSCTTTHHHHHHHHHTC---SSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECC---C-CC--HHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhC---cCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECC---C-CC--hHHHHHHHHHHc-
Confidence 45567888888888321 13444555544455444333334455567899998521 2 23 344444555554
Q ss_pred hcCCCccEEEeccCCcccccC-hHHHHHHHhc
Q psy6303 95 ESGWRWDFIVNLSESDYPVKT-NRALVDFLSA 125 (270)
Q Consensus 95 ~~~~~~dy~~lLSg~D~Plks-~~~i~~fl~~ 125 (270)
.-+|+..|.+.|++-.. .+.+.+.+++
T Consensus 84 ----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~ 111 (240)
T 3bcv_A 84 ----TGEYVAFCDSDDYVDSDMYMTMYNVAQK 111 (240)
T ss_dssp ----CSSEEEECCTTCCCCTTHHHHHHHHHHH
T ss_pred ----CCCEEEEECCCCcCCHHHHHHHHHHHHh
Confidence 34899999999987432 2445555554
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=59.77 E-value=1e+02 Score=29.23 Aligned_cols=107 Identities=14% Similarity=0.042 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCCCeEEecccceeeeCchhHHHHHHHHHHHH
Q psy6303 14 LVKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLPNVRLSRRRQATIWGGASLVTILLDSMQQL 93 (270)
Q Consensus 14 ~~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~nV~~~~~r~~v~WGg~S~v~A~l~ll~~a 93 (270)
+|+..+.+.+.|.++... ..++..++|--|.+.+.....+.+.....++|.++.. ..+| ...|--.+++.|
T Consensus 383 ~yn~~~~l~~~l~s~~~q---~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~~----~n~G--~~~a~n~g~~~a 453 (625)
T 2z86_A 383 AYNCSKYIVRCVESALNQ---TITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQ----KNKG--IGSASNTAVRLC 453 (625)
T ss_dssp ESSCTTTHHHHHHHHHSS---SCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEEE----CCCC--HHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhC---cCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEeC----CCCC--HHHHHHHHHHhc
Confidence 355567788888888321 2355567676666665443333445556789998842 2233 344555555554
Q ss_pred HhcCCCccEEEeccCCcccccC-hHHHHHHHhcCCCCceeec
Q psy6303 94 LESGWRWDFIVNLSESDYPVKT-NRALVDFLSANRDKNFVKS 134 (270)
Q Consensus 94 l~~~~~~dy~~lLSg~D~Plks-~~~i~~fl~~~~g~~Fi~~ 134 (270)
.-+|+..|.+.|++... .+++.+.++.+++...+..
T Consensus 454 -----~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 490 (625)
T 2z86_A 454 -----RGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYT 490 (625)
T ss_dssp -----CSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEE
T ss_pred -----CCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEe
Confidence 34899999999987432 2344556666666555543
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=53.13 E-value=53 Score=31.33 Aligned_cols=106 Identities=17% Similarity=0.100 Sum_probs=62.7
Q ss_pred EEEEEechhhcCCHHHHHHHHHHHHHhhhhcCCCC--eEEEEecCCCCHH-HHHHHHhhccCCCeEEecccceeeeCchh
Q psy6303 5 IVDTVHRRELVKKQEDLKRTNRALVDFLSANRDKN--FVKSHGRQRQDYL-FRELLSLELRLPNVRLSRRRQATIWGGAS 81 (270)
Q Consensus 5 ~~~~~~~~~~~~~~~ql~rLi~~l~~~l~~~~p~~--~~~IHvD~ks~~~-~~~~~~~~~~~~nV~~~~~r~~v~WGg~S 81 (270)
||+.++++. .+.|.+.|.++.+.- .|+. .+.|--|.+.+.. ...+.++....++|+++....+ .+
T Consensus 116 VIIp~yNe~----~~~L~~~L~Sll~qt---~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n-----~G 183 (570)
T 2d7i_A 116 IIIPFHNEG----WSSLLRTVHSVLNRS---PPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKR-----EG 183 (570)
T ss_dssp EEEEESSCC----HHHHHHHHHHHHHHS---CGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSC-----CC
T ss_pred EEEEECCCC----HHHHHHHHHHHHhcC---CccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCC-----CC
Confidence 334455533 278888888883221 2232 4555444554444 3334455567789999864322 34
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEeccCCccccc-ChHHHHHHHhcCC
Q psy6303 82 LVTILLDSMQQLLESGWRWDFIVNLSESDYPVK-TNRALVDFLSANR 127 (270)
Q Consensus 82 ~v~A~l~ll~~al~~~~~~dy~~lLSg~D~Plk-s~~~i~~fl~~~~ 127 (270)
...|-..+++.| .-+|++.|...|.+-. -.+.+.+.++.++
T Consensus 184 ~~~A~N~G~~~A-----~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~ 225 (570)
T 2d7i_A 184 LIRTRMLGASVA-----TGDVITFLDSHCEANVNWLPPLLDRIARNR 225 (570)
T ss_dssp HHHHHHHHHHHC-----CSSEEEECCSSEEECTTCSHHHHHHHHHCT
T ss_pred HHHHHHHHHHhc-----CCCEEEEEcCCccccccHHHHHHHHHHhCC
Confidence 667777777765 2489999998888742 2456677776654
No 6
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=42.14 E-value=6.8 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=26.0
Q ss_pred cceeeeCchhHHHHHHHHHHHHHhcCCCccEEEeccCCcccccChHHHHHHHh
Q psy6303 72 RQATIWGGASLVTILLDSMQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLS 124 (270)
Q Consensus 72 r~~v~WGg~S~v~A~l~ll~~al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~ 124 (270)
...+.-|+.++-..++ .=+|..+|||+++.+++.+-+-
T Consensus 42 ~t~c~~Gd~~~ta~El---------------~kll~~~DFP~ksA~~lAd~iv 79 (84)
T 1iio_A 42 DTTCKSGDVELKASDA---------------GQVLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp CCCCCBTTBCCCTTTT---------------GGGSCGGGSBCSHHHHHHHHHH
T ss_pred CCceeeCCEeeeHHHH---------------HhhCCcccCCCCCHHHHHHHHH
Confidence 5567777776542221 1357789999999999988653
No 7
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=41.70 E-value=1.8e+02 Score=25.38 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhh----ccCC--CeEEecccceeeeCchhHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLE----LRLP--NVRLSRRRQATIWGGASLVTILLD 88 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~----~~~~--nV~~~~~r~~v~WGg~S~v~A~l~ 88 (270)
.-+|.++..++..+ ++ ..+..++||+-.+-+..++....++ +.+| +|++++.+ -.+..+-...+.
T Consensus 67 qps~~~~~~~f~~l---~~--~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~ViDS~----~~s~g~g~~v~~ 137 (297)
T 3nyi_A 67 LPSVESYADVFRSF---VE--QGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSK----QNTVTQALLIDQ 137 (297)
T ss_dssp CCCHHHHHHHHHHH---HT--TTCCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEEECS----CCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HH--CCCeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEEeCC----chHHHHHHHHHH
Confidence 34667777777666 22 2388999999998775665543222 4565 68887633 223333333333
Q ss_pred HHHHHHhcCCCccEEEeccCCcccccChHHHHHHHhcCC
Q psy6303 89 SMQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLSANR 127 (270)
Q Consensus 89 ll~~al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~ 127 (270)
+.+.+- .+ +|.+||.+.+++..
T Consensus 138 A~~l~~-~G----------------~s~~eI~~~l~~~~ 159 (297)
T 3nyi_A 138 FVRMLE-DG----------------LSFEQAMSKLDALM 159 (297)
T ss_dssp HHHHHH-TT----------------CCHHHHHHHHHHHH
T ss_pred HHHHHH-cC----------------CCHHHHHHHHHHHH
Confidence 333332 22 36899999988743
No 8
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=40.95 E-value=75 Score=25.76 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=34.9
Q ss_pred CeEEecccceeeeCchhHHHHHHHHHHHHHhcCCCccEEEeccCCcccccChHHHHHHHhcC
Q psy6303 65 NVRLSRRRQATIWGGASLVTILLDSMQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLSAN 126 (270)
Q Consensus 65 nV~~~~~r~~v~WGg~S~v~A~l~ll~~al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~ 126 (270)
++.++........|+-+...+...+++.+ ..+.++++.+ ..|.|+.+.+.|.+.++..
T Consensus 65 ~~~~~~~~~~~~~~~~g~~~sv~~~l~~~---~~~~d~vlv~-~~D~P~~~~~~i~~l~~~~ 122 (228)
T 1ezi_A 65 GVEVVLRPAELASDTASSISGVIHALETI---GSNSGTVTLL-QPTSPLRTGAHIREAFSLF 122 (228)
T ss_dssp TCEEEECCC------CHHHHHHHHHHHHH---TCCSEEEEEC-CTTCTTCCHHHHHHHHTTC
T ss_pred CCEEEeCchHHcCCCCChHHHHHHHHHHh---CCCCCEEEEE-cCCCCcCCHHHHHHHHHHH
Confidence 34443333334557777777777777765 2345766555 5599999999999988764
No 9
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=38.23 E-value=2.3e+02 Score=25.66 Aligned_cols=99 Identities=18% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCH-HHHHHHHHHHHHhhhhcCCCC--eEEEEecCCCCH-HHHHHHHhhccCC-CeEEecccceeeeCchhHHHHHHHHH
Q psy6303 16 KKQ-EDLKRTNRALVDFLSANRDKN--FVKSHGRQRQDY-LFRELLSLELRLP-NVRLSRRRQATIWGGASLVTILLDSM 90 (270)
Q Consensus 16 ~~~-~ql~rLi~~l~~~l~~~~p~~--~~~IHvD~ks~~-~~~~~~~~~~~~~-nV~~~~~r~~v~WGg~S~v~A~l~ll 90 (270)
+.. +.|.+.|.+|.+.- .|+. .+.|=-|.+.+. ....+.++...++ +|.++....+. +...|--.++
T Consensus 39 N~~~~~l~~~l~Sl~~q~---~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~-----G~~~a~N~g~ 110 (472)
T 1xhb_A 39 NEAWSTLLRTVHSVINRS---PRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRS-----GLIRARLKGA 110 (472)
T ss_dssp SCCHHHHHHHHHHHHHSS---CGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCC-----CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC---cHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCC-----ChHHHHHHHH
Confidence 344 78888888883221 2221 444444444443 3223344555778 89998643322 3556666666
Q ss_pred HHHHhcCCCccEEEeccCCccccc-ChHHHHHHHhcCC
Q psy6303 91 QQLLESGWRWDFIVNLSESDYPVK-TNRALVDFLSANR 127 (270)
Q Consensus 91 ~~al~~~~~~dy~~lLSg~D~Plk-s~~~i~~fl~~~~ 127 (270)
+.| .-+|++.|-+.|.+-. -.+.+.+.+++++
T Consensus 111 ~~A-----~gd~i~flD~D~~~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 111 AVS-----RGQVITFLDAHCECTAGWLEPLLARIKHDR 143 (472)
T ss_dssp HHC-----CSSEEEEEESSEEECTTCHHHHHHHHHHCT
T ss_pred Hhc-----cCCeEEEECCCeEeCccHHHHHHHHHHhCC
Confidence 665 3589999988888543 3466777776654
No 10
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=30.72 E-value=1.1e+02 Score=26.46 Aligned_cols=94 Identities=9% Similarity=-0.017 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCCC--eEEecccceeeeCchhHHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLPN--VRLSRRRQATIWGGASLVTILLDSMQQ 92 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~n--V~~~~~r~~v~WGg~S~v~A~l~ll~~ 92 (270)
.-+|.++..++..+ ++ ...+..++||+-.+-+..++....+++.+++ |++++.+ -.+..+-...+.+.+.
T Consensus 66 qps~~~~~~~f~~l---~~-~g~d~ii~i~iSs~LSGTy~sA~~a~~~~~~~~I~ViDS~----~~s~g~g~~v~~A~~l 137 (285)
T 3lup_A 66 QPSLAELDDLLCQL---EK-EGYTHVLGLFIAAGISGFWQNIQFLIEEHPNLTIAFPDTK----ITSAPQGNLVRNALMC 137 (285)
T ss_dssp CCCHHHHHHHHHHH---HH-TTCCEEEECCSCGGGCTHHHHHTTHHHHCTTSEEECCCCC----CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HH-cCCCeEEEEeCCCchhHHHHHHHHHHHhCCCCCEEEEcCC----chHHHHHHHHHHHHHH
Confidence 34566777766666 22 1345789999998877667665444556664 6666532 2333333333333333
Q ss_pred HHhcCCCccEEEeccCCcccccChHHHHHHHhcCCCCceee
Q psy6303 93 LLESGWRWDFIVNLSESDYPVKTNRALVDFLSANRDKNFVK 133 (270)
Q Consensus 93 al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~g~~Fi~ 133 (270)
+ ..+ +|.+||.+.+++...+.-+-
T Consensus 138 ~--~~G---------------~s~eeI~~~l~~~~~~~~~~ 161 (285)
T 3lup_A 138 S--REG---------------MDFDVIVNKIQSQIEKIEGF 161 (285)
T ss_dssp H--TTT---------------CCHHHHHHHHHHHHTTCEEE
T ss_pred H--HcC---------------CCHHHHHHHHHHHHhhcEEE
Confidence 3 222 37899999998854444333
No 11
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=28.52 E-value=2.9e+02 Score=23.85 Aligned_cols=87 Identities=3% Similarity=0.033 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhcc----CC--CeEEecccceeeeCchhHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELR----LP--NVRLSRRRQATIWGGASLVTILLD 88 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~----~~--nV~~~~~r~~v~WGg~S~v~A~l~ 88 (270)
.-+|.++..++..+ ++ ..+..++||+-.+-+..++....++.. +| +|++++.+ -.+..+-...+.
T Consensus 64 qps~~~~~~~f~~l---~~--~g~~ii~i~iSs~LSGTy~sA~~aa~~~~ee~~~~~I~ViDS~----~~s~g~g~~v~~ 134 (289)
T 1pzx_A 64 QPSPLAMKELFLPY---AK--ENRPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSK----CASLGQGLAVMK 134 (289)
T ss_dssp CCCHHHHHHHHHHH---HH--TTCCEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECC----CCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---Hh--CCCeEEEEECCCchhHHHHHHHHHHHhhHhhCCCCeEEEEcCc----hhhHHHHHHHHH
Confidence 34566666666555 22 236899999999877556544322222 44 79888643 223333333333
Q ss_pred HHHHHHhcCCCccEEEeccCCcccccChHHHHHHHhcCC
Q psy6303 89 SMQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLSANR 127 (270)
Q Consensus 89 ll~~al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~ 127 (270)
+.+.+- .+ +|.+||.+.+++..
T Consensus 135 A~~l~~-~G----------------~s~eeI~~~l~~~~ 156 (289)
T 1pzx_A 135 AVELAK-QN----------------TPYNLLCETIESYC 156 (289)
T ss_dssp HHHHHH-TT----------------CCHHHHHHHHHHHH
T ss_pred HHHHHH-cC----------------CCHHHHHHHHHHHH
Confidence 333332 22 36899999988743
No 12
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=28.35 E-value=2.7e+02 Score=25.04 Aligned_cols=110 Identities=6% Similarity=-0.029 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCCCeEEeccccee--eeCchhHHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLPNVRLSRRRQAT--IWGGASLVTILLDSMQQ 92 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~nV~~~~~r~~v--~WGg~S~v~A~l~ll~~ 92 (270)
|+..+.|.+++.+|...+..+..+..++|-=|.+.+.....+.++ . ..++..++.+ .=+..+.-.|-..+++.
T Consensus 103 yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~----~-~~v~~~~~~~i~~~~n~G~g~A~n~G~~~ 177 (387)
T 3f1y_A 103 RNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASH----G-AEVYSENELMSGYGDAHGKGDAMWRALSV 177 (387)
T ss_dssp SSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHT----T-CEEEEGGGTTGGGCSCCSHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHh----C-chhcccceeEecCCccCCHHHHHHHHHHh
Confidence 555677888888886555433345566665555555333222222 1 1222222111 11222334454455544
Q ss_pred HHhcCCCccEEEeccCCccc--ccChHHHHHHHhcCCCCceeec
Q psy6303 93 LLESGWRWDFIVNLSESDYP--VKTNRALVDFLSANRDKNFVKS 134 (270)
Q Consensus 93 al~~~~~~dy~~lLSg~D~P--lks~~~i~~fl~~~~g~~Fi~~ 134 (270)
| ..+|++.+-+.+.+ -.-.+.+.+.+.++++..++..
T Consensus 178 A-----~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G 216 (387)
T 3f1y_A 178 T-----RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKA 216 (387)
T ss_dssp C-----CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEE
T ss_pred c-----CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEE
Confidence 3 46999999988873 3334566666766666777654
No 13
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=27.13 E-value=1.2e+02 Score=18.99 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=26.0
Q ss_pred CeEEEEEechhhcCCHHHHHHHHHHHHHhhhh--cCCCCeEEEEecC
Q psy6303 3 PHIVDTVHRRELVKKQEDLKRTNRALVDFLSA--NRDKNFVKSHGRQ 47 (270)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ql~rLi~~l~~~l~~--~~p~~~~~IHvD~ 47 (270)
|.|-+.+.. . .+++|-++|..+|.+.|.. .-|..+++|.+.-
T Consensus 1 P~i~i~~~~--g-rs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 1 PYVTVKMLE--G-RTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp CEEEEEEES--C-CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred CEEEEEEcC--C-CCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 455544333 2 2679999999999887752 3355556665543
No 14
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=25.65 E-value=1.9e+02 Score=24.84 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCC-CeEEecccceeeeCchhHHHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLP-NVRLSRRRQATIWGGASLVTILLDSMQQL 93 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~-nV~~~~~r~~v~WGg~S~v~A~l~ll~~a 93 (270)
.-+|.++..++..+ ++ .-+..++||+-.+-+..++....+++.++ +|++++.+ -.+..+-...+.+.+.+
T Consensus 63 qps~~~~~~~f~~l---~~--~~~~ii~i~lSs~LSGTy~sA~~aa~~~~~~I~ViDS~----~~s~g~g~~v~~a~~l~ 133 (280)
T 2dt8_A 63 QPSPEDFARVYREA---LE--EADHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQ----AASLGVGMMVLRAKELL 133 (280)
T ss_dssp CCCHHHHHHHHHHH---TT--SCSEEEEEESCTTTCTHHHHHHHHHTTSTTSEEEEECS----CCTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---Hh--CCCeEEEEECCCcHhHHHHHHHHHHHhCCCCEEEECCc----hhHHHHHHHHHHHHHHH
Confidence 34566666666655 22 23689999999987767766544444444 89988643 23333333334444444
Q ss_pred HhcCCCccEEEeccCCcccccChHHHHHHHhcCC
Q psy6303 94 LESGWRWDFIVNLSESDYPVKTNRALVDFLSANR 127 (270)
Q Consensus 94 l~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~ 127 (270)
- .+ +|.+||.+.+++..
T Consensus 134 ~-~G----------------~s~eei~~~l~~~~ 150 (280)
T 2dt8_A 134 E-EG----------------QSLEAVLAELERLR 150 (280)
T ss_dssp H-HT----------------CCHHHHHHHHHHHH
T ss_pred H-cC----------------CCHHHHHHHHHHHH
Confidence 3 23 36899999988743
No 15
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=24.14 E-value=1.4e+02 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=32.3
Q ss_pred CeEEEEEechhhcCCHHHHHHHHHHHHHhhhh--cCCCCeEEEEecC
Q psy6303 3 PHIVDTVHRRELVKKQEDLKRTNRALVDFLSA--NRDKNFVKSHGRQ 47 (270)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ql~rLi~~l~~~l~~--~~p~~~~~IHvD~ 47 (270)
|..+..|++......++|=+++..+|.++|.+ .-|.+.+||+++-
T Consensus 55 P~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 55 PCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp SCEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred ceEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 77788888876665567888888888877752 4567777777653
No 16
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=23.94 E-value=1.3e+02 Score=22.46 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=25.0
Q ss_pred CeEEEEEechhhcCCHHHHHHHHHHHHHhhhh--cCCCCeEEEEecCC
Q psy6303 3 PHIVDTVHRRELVKKQEDLKRTNRALVDFLSA--NRDKNFVKSHGRQR 48 (270)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ql~rLi~~l~~~l~~--~~p~~~~~IHvD~k 48 (270)
|.+++.|. ... .+++|-++|+.+|.+.|.. .-|..+++|+++--
T Consensus 65 ~~~~I~i~-~~g-rt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~ 110 (131)
T 2aal_A 65 AVVLLTVI-SRP-RSEEQKVCFYKLLTGALERDCGISPDDVIVALVEN 110 (131)
T ss_dssp TCEEEEEE-ESC-CCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred CeEEEEEE-eCC-CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 33444444 223 5677777777777766642 34555666666543
No 17
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=23.47 E-value=2.6e+02 Score=24.06 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHhhhhcCCC-CeEEEEecCCCCHHHHHHHHhhcc-CCCeEEecccceeeeCchhHHHHHHHHHHH
Q psy6303 15 VKKQEDLKRTNRALVDFLSANRDK-NFVKSHGRQRQDYLFRELLSLELR-LPNVRLSRRRQATIWGGASLVTILLDSMQQ 92 (270)
Q Consensus 15 ~~~~~ql~rLi~~l~~~l~~~~p~-~~~~IHvD~ks~~~~~~~~~~~~~-~~nV~~~~~r~~v~WGg~S~v~A~l~ll~~ 92 (270)
|+..+.|.+.+.+|.+.. .+. ..++|--|.+.+.....+.+.... .+.+.++. +.. .-+| ...|.-.+++.
T Consensus 57 yN~~~~l~~~l~sl~~q~---~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~-~~~-~n~G--~~~a~n~g~~~ 129 (329)
T 3ckj_A 57 LDEEDTIGSVIDSISPLV---DGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALP-EVP-IRPG--KGEALWRSLAA 129 (329)
T ss_dssp SSCTTTHHHHHHHHGGGB---TTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCT-TSC-CCCS--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---CCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeec-cCC-CCCC--HHHHHHHHHHh
Confidence 455677888888883322 243 456664444444333222222111 01111110 011 1223 44555556655
Q ss_pred HHhcCCCccEEEeccCCcccc--cChHHHHHHHhcCCCCceeec
Q psy6303 93 LLESGWRWDFIVNLSESDYPV--KTNRALVDFLSANRDKNFVKS 134 (270)
Q Consensus 93 al~~~~~~dy~~lLSg~D~Pl--ks~~~i~~fl~~~~g~~Fi~~ 134 (270)
| .-+|+..+.++|.++ .-.+++.+.+.++++...+..
T Consensus 130 a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g 168 (329)
T 3ckj_A 130 S-----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS 168 (329)
T ss_dssp C-----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEE
T ss_pred C-----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEE
Confidence 4 348999999999833 334677777666667666644
No 18
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=23.37 E-value=4.6e+02 Score=24.52 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=57.9
Q ss_pred hcCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCCCeEEecccceeeeCchhHHHHHHHHHHHH
Q psy6303 14 LVKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLPNVRLSRRRQATIWGGASLVTILLDSMQQL 93 (270)
Q Consensus 14 ~~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~nV~~~~~r~~v~WGg~S~v~A~l~ll~~a 93 (270)
++++++.+.+.+.+|.+.. +.+...++|--|...+.. .++.+.....++|.++... -.|.+...|--.+++.|
T Consensus 101 ~~n~~~~l~~~l~sl~~q~--~~~~~eiivvDd~s~d~t-~~~~~~~~~~~~i~~i~~~----~~~~g~~~a~N~g~~~a 173 (625)
T 2z86_A 101 TYNRAKILAITLACLCNQK--TIYDYEVIVADDGSKENI-EEIVREFESLLNIKYVRQK----DYGYQLCAVRNLGLRAA 173 (625)
T ss_dssp ESSCHHHHHHHHHHHHTCC--CSSCEEEEEEEESCSSCH-HHHHHTTTTTSCEEEEEEC----CCSCCHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHhhc--cCCCeEEEEEeCCCchhH-HHHHHHhhhcCCeEEEEeC----CCCcchhHHHHHHHHhC
Confidence 3566788999999883221 112455666556655433 2322222334678887522 22334445555555554
Q ss_pred HhcCCCccEEEeccCCcccccC-hHHHHHHHhcCCC
Q psy6303 94 LESGWRWDFIVNLSESDYPVKT-NRALVDFLSANRD 128 (270)
Q Consensus 94 l~~~~~~dy~~lLSg~D~Plks-~~~i~~fl~~~~g 128 (270)
..+|++.+.+.+.|-.. .+.+.+.++.++.
T Consensus 174 -----~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~ 204 (625)
T 2z86_A 174 -----KYNYVAILDCDMAPNPLWVQSYMELLAVDDN 204 (625)
T ss_dssp -----CSSEEEEECTTEEECTTHHHHHHHHHHHCTT
T ss_pred -----CcCEEEEECCCCCCCHHHHHHHHHHHhcCCc
Confidence 45899999999988432 3455556665543
No 19
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=23.24 E-value=1.3e+02 Score=24.10 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=32.3
Q ss_pred eeeCchhHHHHHHHHHHHHHhcCC--CccEEEeccCCcccccChHHHHHHHhc
Q psy6303 75 TIWGGASLVTILLDSMQQLLESGW--RWDFIVNLSESDYPVKTNRALVDFLSA 125 (270)
Q Consensus 75 v~WGg~S~v~A~l~ll~~al~~~~--~~dy~~lLSg~D~Plks~~~i~~fl~~ 125 (270)
..-||-+...+...+++.+-+... +.++++ +...|.|+.+.+.+.+.++.
T Consensus 79 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vl-v~~~D~P~~~~~~i~~l~~~ 130 (236)
T 2vsh_A 79 ITKGGADRNTSIKNIIEAIDAYRPLTPEDIVV-THDSVRPFITLRMIQDNIQL 130 (236)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHSCCCTTCEEE-EEETTCTTCCHHHHHHHHHH
T ss_pred EECCCCchHHHHHHHHHHHHhhccCCCCCEEE-EecCCcccCCHHHHHHHHHH
Confidence 344666677777777766542112 346554 44679999999888887765
No 20
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.40 E-value=1.5e+02 Score=18.49 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhhhh--cCCCCeEEEEec
Q psy6303 17 KQEDLKRTNRALVDFLSA--NRDKNFVKSHGR 46 (270)
Q Consensus 17 ~~~ql~rLi~~l~~~l~~--~~p~~~~~IHvD 46 (270)
+++|-++|..+|.+.|.. .-|..+++|.+.
T Consensus 12 s~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~ 43 (62)
T 1otf_A 12 TDEQKETLIRQVSEAMANSLDAPLERVRVLIT 43 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 679999999999877752 345555665554
No 21
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=22.10 E-value=3.1e+02 Score=22.04 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=19.7
Q ss_pred CccEEEeccCCcccccChHHHHHHHhc
Q psy6303 99 RWDFIVNLSESDYPVKTNRALVDFLSA 125 (270)
Q Consensus 99 ~~dy~~lLSg~D~Plks~~~i~~fl~~ 125 (270)
+.++++.+.| |.|+.+.+.|.+.++.
T Consensus 94 ~~d~vlv~~~-D~Pli~~~~i~~l~~~ 119 (229)
T 1qwj_A 94 EVDIVGNIQA-TSPCLHPTDLQKVAEM 119 (229)
T ss_dssp TCSEEEEECT-TCTTCCHHHHHHHHHH
T ss_pred CCCEEEEecC-CCCcCCHHHHHHHHHH
Confidence 4677777755 8899998888877654
No 22
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=21.81 E-value=4.1e+02 Score=23.37 Aligned_cols=91 Identities=5% Similarity=-0.034 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHH----hhccCC--CeEEecccceeeeCchhHHHHHHHH
Q psy6303 16 KKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLS----LELRLP--NVRLSRRRQATIWGGASLVTILLDS 89 (270)
Q Consensus 16 ~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~----~~~~~~--nV~~~~~r~~v~WGg~S~v~A~l~l 89 (270)
-+|.++..++..+ ++ ..+..++||+-.+-+..|+.... +.+.+| +|++++.+ =.+..+-...+.+
T Consensus 99 Ps~~~~~~~f~~l---~~--~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~~~~~I~ViDS~----~~s~g~g~lv~~A 169 (320)
T 3pl5_A 99 VNVGQFESYFRQS---AE--NGQEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIVDTL----AATGGEGYLAMLA 169 (320)
T ss_dssp CCHHHHHHHHHHH---HH--TTCCEEEEECCTTTCTHHHHHHHHHHHHHHHCTTCCEEEEECC----CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HH--CCCeEEEEecCchHhHHHHHHHHHHHHHHhhCCCCeEEEEcCC----chHHHHHHHHHHH
Confidence 3556666666555 22 23789999999987755654321 223566 58887643 1222222333333
Q ss_pred HHHHHhcCCCccEEEeccCCcccccChHHHHHHHhcCCCCcee
Q psy6303 90 MQQLLESGWRWDFIVNLSESDYPVKTNRALVDFLSANRDKNFV 132 (270)
Q Consensus 90 l~~al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~g~~Fi 132 (270)
.+.+- .+ +|.+||.+.+++...+.-+
T Consensus 170 a~l~~-~G----------------~s~eeI~~~le~~~~~~~~ 195 (320)
T 3pl5_A 170 AQARE-EG----------------KSLKETKELILDVGPRLRT 195 (320)
T ss_dssp HHHHH-TT----------------CCHHHHHHHHHHHGGGEEE
T ss_pred HHHHh-cC----------------CCHHHHHHHHHHHHhhceE
Confidence 33332 22 3789999999885444333
No 23
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.48 E-value=1.7e+02 Score=18.90 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=26.6
Q ss_pred CeEEEEEechhhcCCHHHHHHHHHHHHHhhhh--cCCCCeEEEEecC
Q psy6303 3 PHIVDTVHRRELVKKQEDLKRTNRALVDFLSA--NRDKNFVKSHGRQ 47 (270)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ql~rLi~~l~~~l~~--~~p~~~~~IHvD~ 47 (270)
|.|-+-+.....-.+++|-++|+.+|++.+.. .-|..+++|.|+-
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 45554444311124679999999999877742 3455555555543
No 24
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=21.42 E-value=4.2e+02 Score=23.26 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccCC--CeEEecccceeeeCchhHHHHHHHHHHHH
Q psy6303 16 KKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRLP--NVRLSRRRQATIWGGASLVTILLDSMQQL 93 (270)
Q Consensus 16 ~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~~--nV~~~~~r~~v~WGg~S~v~A~l~ll~~a 93 (270)
-+|.++..++..+ ++ .-+..++||+-.+-+..|+....+++.++ +|++++.+ -.+..+-...+.+.+.+
T Consensus 98 Ps~~~~~~~fe~l---~~--~~~~Ii~I~iSS~LSGTy~sA~~Aa~~~~~~~I~ViDS~----~~s~g~g~lv~~Aa~l~ 168 (315)
T 3fys_A 98 PPIGELVALYEEL---GK--SYDAVISIHLSSGISGTFSSAAAADSMVDNIDVYPFDSE----ISCLAQGFYALKAAELI 168 (315)
T ss_dssp CCHHHHHHHHHHH---TT--TCSEEEEEESCTTTCSHHHHHHHGGGGCSSCEEEEEECS----SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---Hh--cCCcEEEEeCCCcHhHHHHHHHHHHHhCCCCCEEEECCc----hhHHHHHHHHHHHHHHH
Confidence 4566666666666 22 24778999999987777776655555666 57776532 23333333334444443
Q ss_pred HhcCCCccEEEeccCCcccccChHHHHHHHhcCCCCceeecc
Q psy6303 94 LESGWRWDFIVNLSESDYPVKTNRALVDFLSANRDKNFVKSH 135 (270)
Q Consensus 94 l~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~g~~Fi~~~ 135 (270)
- .+. + |.+||.+.+++...+.-+-+.
T Consensus 169 ~-~G~-~--------------s~eeI~~~l~~~~~~~~~~f~ 194 (315)
T 3fys_A 169 K-NGA-S--------------SPEDIIKELEEMKKTVRAYFM 194 (315)
T ss_dssp H-TTC-C--------------CHHHHHHHHHHHTTTCEEEEE
T ss_pred H-cCC-C--------------CHHHHHHHHHHHHhccEEEEE
Confidence 3 221 1 789999999885555444443
No 25
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural GE PSI-2, protein structure initiative; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum}
Probab=20.61 E-value=4e+02 Score=22.79 Aligned_cols=92 Identities=10% Similarity=0.064 Sum_probs=55.2
Q ss_pred hcCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCCHHHHHHHHhhccC--CCeEEecccceeeeCchhHHHHHHHHHH
Q psy6303 14 LVKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQDYLFRELLSLELRL--PNVRLSRRRQATIWGGASLVTILLDSMQ 91 (270)
Q Consensus 14 ~~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~~~~~~~~~~~~~~--~nV~~~~~r~~v~WGg~S~v~A~l~ll~ 91 (270)
..-+|.++..++..+ +++...+..++||+-.+-+..|+....+++.+ .+|++++.+ -.+..+-...+.+.+
T Consensus 43 Sqps~~~~~~~f~~~---~~~~~~d~Ii~I~iSs~LSGTy~sA~~aa~~~~~~~I~ViDS~----~~s~g~g~~v~~Aa~ 115 (277)
T 3egl_A 43 SGLSSLELAASYARQ---LERGGDDGVLALHISXELSSTWSAAVTAAAVFDDDSVRVVDTS----SLGMAVGAAAMAAAR 115 (277)
T ss_dssp ECCCHHHHHHHHHHH---HHHTTTSCEEEECSCTTTCSHHHHHHHHHTTSSTTSEEEECCS----CCTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH---HHhCCCCcEEEEEeCcchhhhhHHHHHHHHhCCCCCEEEECCC----chhHHHHHHHHHHHH
Confidence 345677777776544 23212367899999998776676654444444 479998643 233334444444444
Q ss_pred HHHhcCCCccEEEeccCCcccccChHHHHHHHhcCCCC
Q psy6303 92 QLLESGWRWDFIVNLSESDYPVKTNRALVDFLSANRDK 129 (270)
Q Consensus 92 ~al~~~~~~dy~~lLSg~D~Plks~~~i~~fl~~~~g~ 129 (270)
.+- .+ +|.+||.+.+++...+
T Consensus 116 l~~-~G----------------~s~eeI~~~l~~~~~~ 136 (277)
T 3egl_A 116 MAX-DG----------------ASLQECYDIAVDTLXR 136 (277)
T ss_dssp HHH-TT----------------CCHHHHHHHHHHHHHT
T ss_pred HHH-cC----------------CCHHHHHHHHHHHHhh
Confidence 443 22 3689999998874433
No 26
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=20.58 E-value=2.6e+02 Score=27.23 Aligned_cols=106 Identities=8% Similarity=-0.107 Sum_probs=62.8
Q ss_pred hcCCHHHHHHHHHHHHHhhhhcCCCCeEEEEecCCCC-H----HHHHHHHhhccCCCeEEecccceeeeCchhHHHHHHH
Q psy6303 14 LVKKQEDLKRTNRALVDFLSANRDKNFVKSHGRQRQD-Y----LFRELLSLELRLPNVRLSRRRQATIWGGASLVTILLD 88 (270)
Q Consensus 14 ~~~~~~ql~rLi~~l~~~l~~~~p~~~~~IHvD~ks~-~----~~~~~~~~~~~~~nV~~~~~r~~v~WGg~S~v~A~l~ 88 (270)
+|+.++.+.+.|.+|...-. ....+.=.|=||--|. . .+.+.. ....++|.++... + - +.-.|--.
T Consensus 188 tYN~~~~L~~~L~SL~~qt~-~~~~~~EIIVVDNgStD~s~~~~~~e~~--~~~~~~I~vI~~~-N--~---G~a~a~N~ 258 (657)
T 4fix_A 188 TFNRPADCVNALRELTADPL-VDQVIGAVIVPDQGERKVRDHPDFPAAA--ARLGSRLSIHDQP-N--L---GGSGGYSR 258 (657)
T ss_dssp BSSCHHHHHHHHHHHTTSHH-HHTTEEEEEEEECSSSCGGGSTTHHHHH--HHHGGGEEEEECC-C--C---HHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHcCcc-ccCCCCEEEEEECcCCCccchHHHHHHH--HhcCCCEEEEECC-C--C---CHHHHHHH
Confidence 57788999999999921110 0012323566776553 1 122221 1235789998643 2 2 23346667
Q ss_pred HHHHHHhcCCCccEEEeccCCccccc-ChHHHHHHHhcCCCC
Q psy6303 89 SMQQLLESGWRWDFIVNLSESDYPVK-TNRALVDFLSANRDK 129 (270)
Q Consensus 89 ll~~al~~~~~~dy~~lLSg~D~Plk-s~~~i~~fl~~~~g~ 129 (270)
+++.|... .++||+.+|..++.+-. ..+.+.++++.++..
T Consensus 259 Gl~~A~g~-~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~ 299 (657)
T 4fix_A 259 VMYEALKN-TDCQQILFMDDDIRLEPDSILRVLAMHRFAKAP 299 (657)
T ss_dssp HHHHHHHH-CCCSEEEEECSSEEECTHHHHHHHHHHHHBSSC
T ss_pred HHHHHHhc-CCCCEEEEECCCCccChhHHHHHHHHHHhCCCc
Confidence 88888753 36899999988887752 234666677665444
No 27
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.54 E-value=1.8e+02 Score=20.83 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=25.2
Q ss_pred CeEEEEEechhhcCCHHHHHHHHHHHHHhhhh--cCCCCeEEEEecC
Q psy6303 3 PHIVDTVHRRELVKKQEDLKRTNRALVDFLSA--NRDKNFVKSHGRQ 47 (270)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ql~rLi~~l~~~l~~--~~p~~~~~IHvD~ 47 (270)
|..++-|..... .+++|-++|..++.+.|.+ .-|..++||++.-
T Consensus 55 ~~~~i~i~~~~g-~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 55 PAAFGTLMSIGG-IEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp SCEEEEEEESSS-CSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred CeEEEEEEEecC-CCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 444444554332 3477777777777776642 3455556665543
No 28
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=20.17 E-value=63 Score=28.99 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=34.4
Q ss_pred CCccEEEe----ccCCccc--ccChHHHHHHHhcCCCCceeecccC
Q psy6303 98 WRWDFIVN----LSESDYP--VKTNRALVDFLSANRDKNFVKSHGR 137 (270)
Q Consensus 98 ~~~dy~~l----LSg~D~P--lks~~~i~~fl~~~~g~~Fi~~~~~ 137 (270)
..|||+|= .+|-||| +-..++|.+.|+...+-++++.++.
T Consensus 74 ~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~~s~er~~~~p~ 119 (319)
T 1jsd_A 74 REWSYIVERPSAVNGMCYPGNVENLEELRSLFSSASSYQRIQIFPD 119 (319)
T ss_dssp EECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHSSEEEEEESSCG
T ss_pred CceEEEEeCCCCCCCcccCcccCCHHHHHHHHhccCccceEEecCC
Confidence 57999998 4578999 5789999999999889999998754
Done!