RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6303
         (270 letters)



>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 25.9 bits (57), Expect = 6.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 167 LPQGIVMDGGSGTGWLLSPIFVSYVASP 194
           L    +++ G+GTGW + P     +A  
Sbjct: 112 LLASSMVEAGAGTGWTVYPPLAGNLAHA 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,554
Number of extensions: 44783
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)