BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6304
(407 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
Length = 539
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/462 (41%), Positives = 262/462 (56%), Gaps = 96/462 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE L D+D QLK +GG L++ G+P+ +FQ + + + KLCFEQDC
Sbjct: 50 GTKLVGYNRMKFLLESLQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHKLCFEQDC 109
Query: 64 E-----------------GVK-----------PYQSFPT-GSHPPRYQPCKTLLNFRDLS 94
E G+K P+ T G PP + ++ +
Sbjct: 110 EPIWQHRDDLVKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPL--TFEMFVHTVSVI 167
Query: 95 GLPPRPKEDIDFRHVTFGTM-SESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP ED+++ V FG + S+ ++ +F+ P PE F E+ + +I+W+GGE
Sbjct: 168 GPPPRPVEDVEWSVVNFGVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGE 227
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
++AL L ERL E +F+ G L NQ PDL GPPTSQSAAL+FGCLSVR+FYW++ D
Sbjct: 228 SQALRHLQERLKVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDM 287
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+++I P + NIT QLIWREYFYTMS N YY +M++NPICLNIPW + +
Sbjct: 288 YSSI--CGPSPNQNITSQLIWREYFYTMSVGNEYYAEMDRNPICLNIPWKNDYGSD---- 341
Query: 274 LNAWKNGQTGYPFIDAVMRQ-----------------------------------LRRLL 298
N WK G+TGYPFIDA+MRQ L+ LL
Sbjct: 342 FNKWKEGKTGYPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLL 401
Query: 299 DCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
D + C+CPVN+GRRLDP G YIKRY+PEL+ +P++Y+
Sbjct: 402 DADWSVCAGNWMWVSSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYL 461
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPWKAPL VQE A CI+ KDYPERI++H AS +N+ Y+ +
Sbjct: 462 YEPWKAPLHVQETAGCIVGKDYPERIIDHQIASEKNRSYMDE 503
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 199/465 (42%), Positives = 251/465 (53%), Gaps = 101/465 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD QLK HGG+L +++G P +F++L E +LCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQDC 103
Query: 64 EGV-------------------KPYQSF----------PTGSHPP-RYQPCKTLLNFRDL 93
E V K + S G PP YQ L+
Sbjct: 104 EPVWRARDDSVKSACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP DIDF V FG++ ES E +++ PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVSDIDFTGVKFGSLPESFYHEFTVYDKTPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RL+ E E+F G YL +PDL GPP S S AL+FGCLSVR FYW++ D
Sbjct: 220 TTALKQMQQRLAVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SHF ITGQLIWREYFYTMS +NP Y QM NPICL+IPW P
Sbjct: 280 FRQVHQGRLATQSASHF-ITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPW---KEPE 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++ L W G+TG+PF+DA MRQLR
Sbjct: 336 GDE-LQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFL 394
Query: 297 --LLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV G+RLDP G Y++RYVPEL + P
Sbjct: 395 KYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMP 454
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
+QYIYEPWKAP+ +QE+A CII KDYP +VNH+ A+ NK +K
Sbjct: 455 VQYIYEPWKAPIDIQERATCIIGKDYPAPVVNHLVAAQRNKNAMK 499
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 31/111 (27%)
Query: 297 LLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
LLD C CPV G+RLDP G Y++RYVPEL + P+QYIYEPWKAP+ +QE+A C
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDIQERATC----- 474
Query: 357 YPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK 407
II KDYP +VNH+ A+ NK +K
Sbjct: 475 --------------------------IIGKDYPAPVVNHLVAAQRNKNAMK 499
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 196/462 (42%), Positives = 251/462 (54%), Gaps = 96/462 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K +GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALEDLDNQFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDC 103
Query: 64 E--------GVKP-----------YQSF----------PTGSHPP-RYQPCKTLLNFRDL 93
E GVK Y S G PP YQ L+ +
Sbjct: 104 EPLWRARDDGVKSACREIGVACREYVSHTLWEPDTVIRANGGIPPLTYQ---MFLHTVTI 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP D+D +TFGT+ + +E ++F PKPE + E + +IRW+GGE
Sbjct: 161 VGDPPRPVPDVDMSGITFGTLPDCFYQEFTVFDKTPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RL+ E E+F+ G YL SPDL GPP S S AL+FGCLSVR FYW++ D
Sbjct: 220 TAALKQMQQRLAVEHETFRKGSYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDL 279
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
F +H+GR S ITGQLIWREYFYTMS +NP Y QM NPICL+IPW HP ++
Sbjct: 280 FRQVHQGRLSSAHFITGQLIWREYFYTMSVNNPNYGQMADNPICLDIPW---KHPEGDE- 335
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W G+TG+PFIDA MRQLR LL
Sbjct: 336 LQRWIEGRTGFPFIDAAMRQLRAEGWLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLL 395
Query: 299 DCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
D + C CPV G+RLDP G Y++RYVPE+ + P+ YI
Sbjct: 396 DADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYI 455
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPWKAPL VQ +A+CII K YP +VNH+ A+ N+ +K+
Sbjct: 456 YEPWKAPLDVQTRASCIIGKHYPAPLVNHIVAAQRNRNAMKE 497
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
Length = 548
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 197/465 (42%), Positives = 253/465 (54%), Gaps = 101/465 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K HGG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDSQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EGV-------------------KPYQSF----------PTGSHPP-RYQPCKTLLNFRDL 93
E V K + S G PP YQ L+
Sbjct: 104 EPVWRARDDSVKNACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP ++DF V FG++ ES E ++F PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVGEVDFTGVKFGSLPESFYNEFTVFDKTPKPEDLGVFLETE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RL+ E E+F G YL +PDL GPP S S AL+FGCLSVR FYW++ D
Sbjct: 220 TTALKQMQQRLTVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SHF ITGQLIWREYFYTMS +NP Y QM NPICL+IPW P+
Sbjct: 280 FRQVHQGRLTSNSASHF-ITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPW---KTPS 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++ L W G+TG+PF+DA MRQLR
Sbjct: 336 GDE-LQRWMEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFL 394
Query: 297 --LLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV G+RLDP G Y++RYVPEL + P
Sbjct: 395 KYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMP 454
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
++YIYEPWKAP+ VQE+A+CII KDYP+ +VNH+ A+ N+ +K
Sbjct: 455 VEYIYEPWKAPIDVQERASCIIGKDYPDPVVNHLVAAQRNRNAMK 499
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 31/111 (27%)
Query: 297 LLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
LLD C CPV G+RLDP G Y++RYVPEL + P++YIYEPWKAP+ VQE+A+C
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERASC----- 474
Query: 357 YPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK 407
II KDYP+ +VNH+ A+ N+ +K
Sbjct: 475 --------------------------IIGKDYPDPVVNHLVAAQRNRNAMK 499
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata]
Length = 528
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 197/466 (42%), Positives = 251/466 (53%), Gaps = 101/466 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD QLK HGG+L +++G P +F++L E +LCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALEDLDSQLKKHGGRLIMLKGKPNVVFRRLWEEFGIRRLCFEQDC 103
Query: 64 E-----------------GVKPYQSF------------PTGSHPP-RYQPCKTLLNFRDL 93
E GV ++ G PP YQ L+
Sbjct: 104 EPVWRARDDSVKAACKEIGVVCKENVSHTLWEPDTVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP ++DF V FG++ E +E ++F PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVSNVDFTGVKFGSLPECFYQEFTVFDKTPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RL+ E E+F G YL +PDL GPP S S AL+FGCLSVR FYWAL D
Sbjct: 220 TTALKQMQQRLAVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWALQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SH I GQLIWREYFYTMS +NP Y QM NPICL+IPW P
Sbjct: 280 FRQVHQGRLATQSASHV-IAGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPW---KEPQ 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++ L W G+TG+PF+DA MRQLR
Sbjct: 336 GDE-LQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFL 394
Query: 297 --LLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV G+RLDP G Y++RYVPEL + P
Sbjct: 395 KYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMP 454
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+QYIYEPWKAP+ VQE+A CII KDYP +VNH+ A+ +NK +K+
Sbjct: 455 VQYIYEPWKAPIDVQERATCIIGKDYPGPVVNHLVAAQKNKNAMKE 500
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 61/111 (54%), Gaps = 31/111 (27%)
Query: 297 LLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
LLD C CPV G+RLDP G Y++RYVPEL + P+QYIYEPWKAP+ VQE+A C
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDVQERATC----- 474
Query: 357 YPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK 407
II KDYP +VNH+ A+ +NK +K
Sbjct: 475 --------------------------IIGKDYPGPVVNHLVAAQKNKNAMK 499
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera]
Length = 528
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/466 (42%), Positives = 250/466 (53%), Gaps = 101/466 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EGV----------------------------KPYQSF-PTGSHPP-RYQPCKTLLNFRDL 93
E V +P G PP YQ L+
Sbjct: 104 EPVWRARDDSVKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP +IDF V FG++ E +E +++ PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVPNIDFTGVKFGSLPECFYQEFTVYDKTPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RLS E E+F G YL +PDL GPP S S AL+FGCLSVR FYWA+ D
Sbjct: 220 TTALKQMQQRLSVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SHF ITGQLIWREYFYTMS +NP Y QM NPICL+IPW +P
Sbjct: 280 FRQVHQGRLTTNSASHF-ITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPW---KNPE 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++ L W G+TG+PF+DA MRQLR
Sbjct: 336 GDE-LQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFL 394
Query: 297 --LLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV G+RLDP G Y++RYVPEL + P
Sbjct: 395 KYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMP 454
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
++YIYEPWKAP+ VQE+A C+I KDYP +VNH+ A+ NK +K+
Sbjct: 455 VEYIYEPWKAPIDVQERATCVIGKDYPAPVVNHLVAAQRNKNAMKE 500
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
Length = 548
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/465 (42%), Positives = 249/465 (53%), Gaps = 101/465 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EGV----------------------------KPYQSF-PTGSHPP-RYQPCKTLLNFRDL 93
E V +P G PP YQ L+
Sbjct: 104 EPVWRARDDSVKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP +IDF V FG++ E +E +++ PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVPNIDFTGVKFGSLPECFYQEFTVYDKTPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RLS E E+F G YL +PDL GPP S S AL+FGCLSVR FYWA+ D
Sbjct: 220 TTALKQMQQRLSVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SHF ITGQLIWREYFYTMS +NP Y QM NPICL+IPW +P
Sbjct: 280 FRQVHQGRLTTNSASHF-ITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPW---KNPE 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++ L W G+TG+PF+DA MRQLR
Sbjct: 336 GDE-LQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFL 394
Query: 297 --LLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV G+RLDP G Y++RYVPEL + P
Sbjct: 395 KYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMP 454
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
++YIYEPWKAP+ VQE+A C+I KDYP +VNH+ A+ NK +K
Sbjct: 455 VEYIYEPWKAPIDVQERATCVIGKDYPAPVVNHLVAAQRNKNAMK 499
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 195/464 (42%), Positives = 251/464 (54%), Gaps = 96/464 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD+Q K +GG+L +V+G P ++F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EGV-KPY-QSFPT---------------------------GSHPP-RYQPCKTLLNFRDL 93
E V +P +S T G PP YQ L+
Sbjct: 104 EPVWRPRDESVKTACREIGVTCREHVSHTLWEPDTVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP ++ R + FGT+ E +++ VP PE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVDNAKLRGIKFGTLPLCFYEEFTVYDKVPNPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ RL+ E E+F G YL SPDL GPP S S AL+FGCLSVR+FYW+L D
Sbjct: 220 TAALKQMQHRLAVEYETFCRGSYLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDL 279
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
F +H+G S ITGQLIWREYFYTMS +NP+Y QM NPICL+IPW P ++
Sbjct: 280 FQQVHQGSLCSTQYITGQLIWREYFYTMSVNNPHYGQMTDNPICLDIPW---KSPEGDE- 335
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W +G+TG+PF+DA MRQLR LL
Sbjct: 336 LERWASGRTGFPFVDAAMRQLRLEGWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLL 395
Query: 299 DCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
D + V CPV G+RLDP G Y++RYVPEL + P +YI
Sbjct: 396 DADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYI 455
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
YEPWKAPL VQE+ANCII KDYP +VNH+ A+ N+ ++ K
Sbjct: 456 YEPWKAPLDVQERANCIIGKDYPAPVVNHIVAAQRNRNAMEDTK 499
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 60/111 (54%), Gaps = 31/111 (27%)
Query: 297 LLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
LLD C CPV G+RLDP G Y++RYVPEL + P +YIYEPWKAPL VQE+AN
Sbjct: 417 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAPLDVQERAN------ 470
Query: 357 YPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK 407
CII KDYP +VNH+ A+ N+ ++
Sbjct: 471 -------------------------CIIGKDYPAPVVNHIVAAQRNRNAME 496
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 190/450 (42%), Positives = 243/450 (54%), Gaps = 96/450 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD+Q + +GG+L +++G P IF++L E LCFEQDC
Sbjct: 44 GTKMVGYNRMRYLLEALNDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDC 103
Query: 64 EGV-KPYQSF----------------------------PTGSHPP-RYQPCKTLLNFRDL 93
E + +P + G PP YQ L+ ++
Sbjct: 104 EPIWRPRDASVRALCRDIGVSCREHVAHTLWNPDTVIKANGGIPPLTYQ---MFLHTVEI 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP +D+D V FG++ ES RE +F PKPE + E + +IRW+GGE
Sbjct: 161 IGNPPRPVDDVDLNGVNFGSLPESFYREFVVFDKAPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ ERL+ E E+F G YL +PDL GPP S S AL+FGCLSVRRFYW+L D
Sbjct: 220 TAALKQMQERLAVEYETFCRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDL 279
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
F +H+GR S ITGQLIWREYFYTMS +NP Y QM NPICL+IPW P ++
Sbjct: 280 FQQVHQGRLASTQFITGQLIWREYFYTMSVNNPNYAQMSGNPICLDIPW---KEPENDE- 335
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L WK G+TG+PF+DA MRQLR LL
Sbjct: 336 LQRWKEGRTGFPFVDAAMRQLRTEGWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLL 395
Query: 299 DCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
D + C CPV GRRL+P G Y++RYVPEL + P +YI
Sbjct: 396 DADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYI 455
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHV 365
YEPW+APL VQE A C+I +DYP +V+H
Sbjct: 456 YEPWRAPLEVQEAAGCVIGRDYPAPVVDHT 485
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon]
Length = 528
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 194/466 (41%), Positives = 252/466 (54%), Gaps = 101/466 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K +GG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKLVGYNRMRYLLEALDDLDNQFKKYGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EGV-------------------KPYQSF----------PTGSHPP-RYQPCKTLLNFRDL 93
E V K + S G PP YQ L+
Sbjct: 104 EPVWRARDDSVKAACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQ---MFLHTVTT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP DID R V FG++ E E ++F PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVHDIDLRRVKFGSLPECFYNEFTVFDKAPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
+ AL ++ +RL+ E E+F G YL +PDL GPP S S AL+FGCLSVR FYW++ D
Sbjct: 220 STALKQMQQRLAVEHETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SHF ITGQLIWREYF+TMS +NP Y QM NPICL+IPW +P
Sbjct: 280 FRKVHQGRLTTQSASHF-ITGQLIWREYFHTMSVNNPNYGQMSGNPICLDIPW---KNPE 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++ L W++G+TG+PF+DA MRQL+
Sbjct: 336 GDE-LKRWEDGRTGFPFVDATMRQLKTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFL 394
Query: 297 --LLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV G+RLDP G Y++RYVPEL P
Sbjct: 395 KYLLDVDWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELACMP 454
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
++YIYEPWKAP+ +Q +ANCII KDYP +VNH+ A+ NK +K+
Sbjct: 455 VEYIYEPWKAPIDIQGRANCIIGKDYPAPVVNHLVAAQRNKNTMKE 500
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 59/111 (53%), Gaps = 31/111 (27%)
Query: 297 LLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
LLD C CPV G+RLDP G Y++RYVPEL P++YIYEPWKAP+ +Q +ANC
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELACMPVEYIYEPWKAPIDIQGRANC----- 474
Query: 357 YPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK 407
II KDYP +VNH+ A+ NK +K
Sbjct: 475 --------------------------IIGKDYPAPVVNHLVAAQRNKNTMK 499
>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
gi|122106526|sp|Q17DK5.1|CRY1_AEDAE RecName: Full=Cryptochrome-1
gi|108880271|gb|EAT44496.1| AAEL004146-PA [Aedes aegypti]
Length = 545
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 189/467 (40%), Positives = 244/467 (52%), Gaps = 105/467 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +G+NR +FLLE LADLDRQL+ GGQL++ +G+ +++ ++L ELN KLCFEQDC
Sbjct: 49 GTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDC 108
Query: 64 EGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
E + P Q T G PP YQ L+ D+
Sbjct: 109 EPIWKARDDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQ---MFLHTVDI 165
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVP-KPEQFHKYPEMDFGDPLI---RW 149
G PPRP F V FG++ L +EV L Q PE F Y E G+P I +W
Sbjct: 166 IGKPPRPVAAPSFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYE---GNPDISHQQW 222
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
+GGET+AL L RL QE E+F G +L Q P+ PPTS SAAL+FGCLSVR FYW
Sbjct: 223 MGGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWC 282
Query: 210 LHDHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+HD + + R P +ITGQLIWREYFYTMS HNP+Y +ME NPICLNIPW
Sbjct: 283 VHDLYEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPW---- 338
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQ--------------------------------- 293
+ K+ L+ WK G+TG+P IDA MRQ
Sbjct: 339 YEPKDDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQ 398
Query: 294 --LRRLLDCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELR 328
L+ LLD + VC P+ RRLDP G Y++RY+PEL+
Sbjct: 399 HFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELK 458
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
P Y++EPWKAPL VQ++ CI+ +DYP +++ AS N +
Sbjct: 459 NLPTLYVHEPWKAPLDVQKECGCIVGRDYPAPMIDLAAASRANANTM 505
>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 183/480 (38%), Positives = 250/480 (52%), Gaps = 107/480 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKL 57
GT +GYNR FLL LAD+D+QLK+ G+L++ QG+P ++F++L K+
Sbjct: 47 GTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKI 106
Query: 58 CFEQDCEGV------------------------------KPYQSFPTGSHPPRYQPCKTL 87
CFEQDCE + + S G P YQ
Sbjct: 107 CFEQDCEPIWNRRDDSVRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQ---MF 163
Query: 88 LNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLI 147
L+ ++ G+PPRP ED D+ V F +++++ E++ F P PE F+ YP+ +
Sbjct: 164 LHTVEIIGVPPRPVEDPDWDGVEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKV 223
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+W GGE +AL+ L+ERL E +FK+G YL NQ +P++ P S SA L+FGCLSVRRFY
Sbjct: 224 KWHGGEQQALLHLDERLKVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFY 283
Query: 208 WALHDHFN--TIHEGRPPSHF----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP 261
W++HD F I R H +ITGQLIWREYFYTMS +NPYYD+ME N ICLNIP
Sbjct: 284 WSVHDLFKHVQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIP 343
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ---------------------------- 293
W + PNKE+ L +W++GQTG+P IDA MRQ
Sbjct: 344 W---AAPNKEQ-LQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSW 399
Query: 294 -------LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRY 323
L+ LLD + V CP+ F +RLDP G YI++Y
Sbjct: 400 EHGLRHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQY 459
Query: 324 VPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
VPEL P +YI+EPW+ P +QE C+I YPERIV+ S N ++ + + I
Sbjct: 460 VPELANVPQEYIHEPWRMPQELQENCECVIGVQYPERIVDLANVSKRNVXAMQTLRQSLI 519
>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 183/480 (38%), Positives = 248/480 (51%), Gaps = 107/480 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKL 57
GT +GYNR FLL LAD+D+QLK+ G+L++ QG+P ++F++L K+
Sbjct: 47 GTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKI 106
Query: 58 CFEQDCEGV------------------------------KPYQSFPTGSHPPRYQPCKTL 87
CFEQDCE + + S G P YQ
Sbjct: 107 CFEQDCEPIWNRRDDSVRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQ---MF 163
Query: 88 LNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLI 147
L+ ++ G+PPRP ED D+ V F +++++ E++ F P PE F+ YP+ +
Sbjct: 164 LHTVEIIGVPPRPVEDPDWDGVEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKV 223
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+W GGE +AL+ L+ERL E +FK+G YL NQ +P++ P S SA L+FGCLSVRRFY
Sbjct: 224 KWHGGEQQALLHLDERLKVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFY 283
Query: 208 WALHDHFN--TIHEGRPPSHF----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP 261
W +HD F I R H +ITGQLIWREYFYTMS +NPYYD+ME N ICLNIP
Sbjct: 284 WRVHDLFKHVQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLNIP 343
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------- 296
W + PNKE+ L +W++GQTG+P IDA MRQL
Sbjct: 344 W---AAPNKEQ-LQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSW 399
Query: 297 ----------LLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRY 323
LLD + V CP+ F +RLDP G YI+ Y
Sbjct: 400 EHGLRXFLXYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXY 459
Query: 324 VPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
VPEL P +YI+EPW+ P +QE C+I YPERIV+ + S N ++ + + I
Sbjct: 460 VPELANVPQEYIHEPWRMPQELQENCECVIGVQYPERIVDLAKVSKRNVHAMQTLRQSLI 519
>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
gi|205696380|sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
Length = 545
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 238/477 (49%), Gaps = 98/477 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE LADLDRQ + GGQL + +G +++ ++L ELN KLC+EQDC
Sbjct: 51 GTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDC 110
Query: 64 EGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
E + P + T G PP YQ L+ ++
Sbjct: 111 EPIWKERDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQ---MFLHTVNI 167
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP +F +V FG + L E+ L Q +P P+ F + + + +W+GGE
Sbjct: 168 IGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGE 227
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL L RL QE E+F+ G YL Q P++ GP TS SAAL+FGCLSVR FYW +HD
Sbjct: 228 TRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDL 287
Query: 214 FNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
F + + P +ITGQLIWREYFYTMS NP+Y +ME+NPICLNIPW + +
Sbjct: 288 FAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLNIPW----YKPE 343
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQ-----------------------------------LR 295
+ L WK G+TG+P IDA MRQ L+
Sbjct: 344 DDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLK 403
Query: 296 RLLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CP+ RRLDP G Y+KRY+PEL +P
Sbjct: 404 YLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPA 463
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYP 389
Q+++EPWKA Q + C+I + YP +V+ S N + + + P
Sbjct: 464 QFVHEPWKASREQQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREKLVDGGSTP 520
>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
Length = 547
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 179/468 (38%), Positives = 245/468 (52%), Gaps = 107/468 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSH------GGQLFIVQGSPISIFQKLKRELNFTKL 57
GT +GYNR FLL LA++D+QLK+ G+L++ QG+P ++F++L K+
Sbjct: 47 GTKTVGYNRMSFLLNSLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKI 106
Query: 58 CFEQDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTL 87
CFEQDCE + P T G PP YQ
Sbjct: 107 CFEQDCEPIWNRRDDSVRALCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQ---MF 163
Query: 88 LNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLI 147
L+ ++ G PPRP ED ++ V F +++++ E++ F P PE F+ +P+ +
Sbjct: 164 LHTVEIIGAPPRPVEDPEWDGVEFLKLTDNMLMELNAFWQFPTPEDFNIFPDNISYVAKV 223
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+W GGE +AL+ L ERL E +FK+G YL NQ +P++ P S SA L+FGCLSVRRFY
Sbjct: 224 KWRGGEQQALLHLAERLKVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFY 283
Query: 208 WALHDHFNTI------HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP 261
W++HD F + H +ITGQLIWREYFYTMS +NPYYD+ME N ICLNIP
Sbjct: 284 WSVHDLFKHVQIEAFYHRIHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNEICLNIP 343
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ---------------------------- 293
W P PN+E+ L +W++GQTG+P IDA MRQ
Sbjct: 344 WAP---PNQEQ-LQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSW 399
Query: 294 -------LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRY 323
L+ LLD + V CP+ F +RLDP G YI++Y
Sbjct: 400 EHGLRHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQY 459
Query: 324 VPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
VPEL + P +YI+EPW+ P +QE C+I YPERIV+ + S N
Sbjct: 460 VPELAKIPQEYIHEPWRMPQEMQENYECVIGVQYPERIVDLAKVSKRN 507
>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 181/453 (39%), Positives = 239/453 (52%), Gaps = 87/453 (19%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC----- 63
GYN RFLLE L DL+ L GG+L+I+QG+P++IF+ +K ++ + +EQDC
Sbjct: 47 GYNPMRFLLESLIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGR 106
Query: 64 ---EGVKPY------QSFPTGSHP---PRY-------QPCKTLLNFRDLS---GLPPRPK 101
E VK + + T SH P+ P T F++ + G PP P
Sbjct: 107 TRDEKVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPV 166
Query: 102 EDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFGDPLIRWLGGETEALIKL 160
++D+ V F + S+Q E P PE F YPE+ + RW GGET AL +L
Sbjct: 167 GNVDWLSVIFEELPASIQDEFKNLHN-PTPETFGIYPEVPENLTSTYRWYGGETRALEQL 225
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
ERL E E+F +G YL NQV+PDL PP+S SAAL++GCLS+R+FYW L F EG
Sbjct: 226 KERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEG 285
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
+++T QLIWR+YFYTMS N + Q+E NP C++IPW P +K L WK G
Sbjct: 286 DLLPMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTG 345
Query: 281 QTGYPFIDAVMRQL-----------------------------------RRLLDCTY--- 302
+TGYPFIDA MRQL + LLD +
Sbjct: 346 KTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVC 405
Query: 303 --------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
CVCPV++G RLDP G YIKRYVPEL+ P Q++YEPWK P
Sbjct: 406 SGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCP 465
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
VQ++ CII KDYP IV+H AS N++ +
Sbjct: 466 ESVQKQVGCIIGKDYPNCIVDHTIASKGNRKKM 498
>gi|210136298|gb|ACJ08741.1| cryptochrome [Neobellieria bullata]
Length = 542
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 181/497 (36%), Positives = 252/497 (50%), Gaps = 105/497 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR +FLL+ L D++ QL+S G+L+I++G+P+ IF+ L + KLCFE
Sbjct: 45 GTQSVGYNRLKFLLDSLEDINNQLRSVSLSLGRLYIMKGNPVQIFRSLHEQRGIKKLCFE 104
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P + T G PP YQ L+
Sbjct: 105 QDCEPIWNRRDNAVKNLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQ---MFLHT 161
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D D+ +V F +SE L +++ +F P PE F YP+ ++W+
Sbjct: 162 VQIIGLPPRPVPDPDWHNVKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWI 221
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L++RL E +FK G YL NQ P++ P S SA L+FGCLSVR+FYW +
Sbjct: 222 GGETQALLHLDQRLKVEESAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDV 281
Query: 211 HDHFNTIHEGRP------PSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICLNIPW
Sbjct: 282 HDLFKDVQQQAECLGMLMSGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLNIPWAE 341
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+H L W G+TG+P IDA MRQ
Sbjct: 342 TNHIQ----LQRWTQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHG 397
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CP+ +RLDP G YIK+YVPE
Sbjct: 398 LRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPE 457
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINK 386
L P +YI+EPW+ P+ +QE ++C+I YPER+++ A N ++ + N +I +
Sbjct: 458 LANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLIDLNVACKRNTIAMRTLR-NALIAE 516
Query: 387 DYPERIVNHVQASLENK 403
P+ H + S E +
Sbjct: 517 GAPDNGPPHCRPSNEEE 533
>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 180/453 (39%), Positives = 238/453 (52%), Gaps = 87/453 (19%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC----- 63
GYN RFLL L DL+ L GG+L+I+QG+P++IF+ +K ++ + +EQDC
Sbjct: 47 GYNPMRFLLXSLIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGR 106
Query: 64 ---EGVKPY------QSFPTGSHP---PRY-------QPCKTLLNFRDLS---GLPPRPK 101
E VK + + T SH P+ P T F++ + G PP P
Sbjct: 107 TRDEKVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPV 166
Query: 102 EDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFGDPLIRWLGGETEALIKL 160
++D+ V F + S+Q E P PE F YPE+ + RW GGET AL +L
Sbjct: 167 GNVDWLSVIFEELPASIQDEFKNLHN-PTPETFGIYPEVPENLTSTYRWYGGETRALEQL 225
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
ERL E E+F +G YL NQV+PDL PP+S SAAL++GCLS+R+FYW L F EG
Sbjct: 226 KERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEG 285
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
+++T QLIWR+YFYTMS N + Q+E NP C++IPW P +K L WK G
Sbjct: 286 DLLPMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTG 345
Query: 281 QTGYPFIDAVMRQL-----------------------------------RRLLDCTY--- 302
+TGYPFIDA MRQL + LLD +
Sbjct: 346 KTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVC 405
Query: 303 --------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
CVCPV++G RLDP G YIKRYVPEL+ P Q++YEPWK P
Sbjct: 406 SGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCP 465
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
VQ++ CII KDYP IV+H AS N++ +
Sbjct: 466 ESVQKQVGCIIGKDYPNCIVDHTIASKGNRKKM 498
>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
Length = 608
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 233/475 (49%), Gaps = 100/475 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE LADLDRQ + GGQL + +G ++ ++L ELN KLCFEQDC
Sbjct: 111 GTRVVGYNRMKFLLESLADLDRQFRELGGQLLVFRGDSETVLRRLFEELNIKKLCFEQDC 170
Query: 64 EGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
E + P + T G PP YQ L+ D+
Sbjct: 171 EPIWRERDERVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQ---MFLHTVDI 227
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT--VPKPEQFHKYPEMDFGDPLIRWLG 151
G PPRP DF + FG + L E+ L+Q +P PE+F + + +W+G
Sbjct: 228 IGEPPRPVGAPDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNADIAFQKWIG 287
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GET AL L RL QE E+F+ G YL Q P++ GP TS SAAL+FGCLSVR FYW +H
Sbjct: 288 GETRALESLGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVH 347
Query: 212 DHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
D F + + P +ITGQLIWREYFYTMS NP+Y +M++NPICLNIPW +
Sbjct: 348 DLFAKVQASSQFKCPIGQHITGQLIWREYFYTMSVRNPHYGEMDRNPICLNIPW----YE 403
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQ----------------------------------- 293
+ L WK G+TG+P IDA MRQ
Sbjct: 404 PVDDSLVRWKEGRTGFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLWISWEAGLQHF 463
Query: 294 LRRLLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
L+ LLD + C CPV RLDP G Y+KRYVPEL +
Sbjct: 464 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYVKRYVPELVNY 523
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIIN 385
P ++EPWKA Q + C I + YP +V+ + N + K + I N
Sbjct: 524 PAHLVHEPWKATKEEQLEYGCTIGQQYPAPMVDLNVVAKRNAHAMSKLREELINN 578
>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
morsitans]
Length = 536
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 183/474 (38%), Positives = 252/474 (53%), Gaps = 101/474 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNR RFLL+ L DLD Q + G+L+ QG+P +IF++L KLC EQDC
Sbjct: 45 GTKCTGYNRLRFLLDSLRDLDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDC 104
Query: 64 E-----------------GVK-----------PYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
E G+K P Q T G PP YQ L+ +
Sbjct: 105 EPIWNRRDNDVKVLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQ---MFLHTVQV 161
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
GLPPRP E+ +++ V ++E++ ++ F +P+PEQF+ + E L++W GGE
Sbjct: 162 IGLPPRPAENANWKGVDILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGE 221
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
TEALI L ERL E E+FK G YL NQ +P++ P S S L+FGCLSVR+FYWA+HD
Sbjct: 222 TEALILLEERLKVEGEAFKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDL 281
Query: 214 FNTIHEG------RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
F + + + S +ITGQLIWREYFYTMS +NPYYD+ME+N ICLNIPW P +
Sbjct: 282 FEDVQQHVKMFGFQIMSGAHITGQLIWREYFYTMSVNNPYYDRMEENEICLNIPWAPVN- 340
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQ---------------------------------- 293
++ L WK G+TG+P +DA MRQ
Sbjct: 341 ---DEQLENWKLGKTGFPLVDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQH 397
Query: 294 -LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
L+ LLD + V CP+ +RLDP G YIK+YVPEL
Sbjct: 398 FLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAH 457
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
P +YI+EPW+ PL Q+++ CII + YP+RI++ V+A+ N ++ + + +
Sbjct: 458 VPKEYIHEPWRMPLSEQKRSKCIIGEHYPKRIIDFVKAAESNMTAMRNLRQDLM 511
>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
Length = 539
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 236/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLK--SHG-GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L D+D+QLK S G G L I +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLDDIDKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVRLHKICVE 107
Query: 61 QDCEGV----------------------------KPYQSFPT--GSHPPRYQPCKTLLNF 90
DCE + P T G P YQ L+
Sbjct: 108 LDCEPIWNERDEAINNLCRELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D F V F +S ++RE+ + P PE F+ Y + I W+
Sbjct: 165 VHIIGLPPRPVHDPQFDGVGFVQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWV 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE++AL+ L ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW +
Sbjct: 225 GGESQALLLLGERLKVEQHAFERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNV 284
Query: 211 HDHFNT------IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F I + S +ITGQLIWREYFYTMS +NP YD+ME N ICLNIPW
Sbjct: 285 HDLFKNVQLRACIRGVQMTSGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLNIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E +L W+ GQTG+P IDA MRQ
Sbjct: 343 -AKPN-EDHLQRWRLGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +R DP+G+YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
LR ++I+EPW+ QE A C+I YPERI++ AS N +K + + I
Sbjct: 461 LRNVTKEFIHEPWRMTAEQQEIAECLIGVHYPERIIDLSLASKRNMAAMKALRNSLI 517
>gi|405961052|gb|EKC26912.1| Cryptochrome-1 [Crassostrea gigas]
Length = 517
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 244/448 (54%), Gaps = 78/448 (17%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNRFRFLLECL DLD+ LK+ G +L+ QG P I ++L E TK+ FE D
Sbjct: 47 GTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADP 106
Query: 64 EGV-KPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
E + + G PP L+ G PPRP ED DF ++ +S++ ++
Sbjct: 107 EPIWQERDRLNNGGSPPLTFSLFNLVT--STIGPPPRPVEDPDFTDISL-PVSQNHDKQF 163
Query: 123 SLFQTVPKPEQFHKYPEMDFGDP-LIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQV 181
+P E + PE + + L+ WLGGE++AL L R+ E ++++G + NQ
Sbjct: 164 G----IPTLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEETAYENGYVMPNQY 219
Query: 182 SPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE--GRPPSHFNITGQLIWREYFY 239
PDL PP S SA L+FGCLSVR+FYW++HD F + G P S ++ QL+WREYFY
Sbjct: 220 HPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKFEEVKPSIGAPVS---LSAQLMWREYFY 276
Query: 240 TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---- 295
TM+ +N YD+ME NPICLNIPW +P E+ W G+TGYP+IDA+M+QLR
Sbjct: 277 TMAINNINYDKMETNPICLNIPWY--DNPEHEE---KWTKGETGYPWIDAIMKQLRYEGW 331
Query: 296 -------------------------------RLLDCTYCV-------------------- 304
LLD + V
Sbjct: 332 VHHVARHAVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMWVSSSAFEKVLQCP 391
Query: 305 ---CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
CPV +G+R+DP G Y++RY+P L+ P++Y++EPWKAPL VQ+KA CI+ DYP+ +
Sbjct: 392 NCFCPVRYGKRMDPSGEYVRRYLPVLKDMPLRYLFEPWKAPLPVQQKAKCIVGVDYPKPM 451
Query: 362 VNHVQASLENKQYLKKEKANCIINKDYP 389
V+H +AS E Q +K K + ++ K+ P
Sbjct: 452 VDHQKASKECIQNMKAVK-DALMGKEIP 478
>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
Length = 539
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 176/477 (36%), Positives = 236/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+DRQL+ G L I +G P+ IF++L + K+C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVE 107
Query: 61 QDCEGV----------------------------KPYQSFPT--GSHPPRYQPCKTLLNF 90
QDCE + P T G P YQ L+
Sbjct: 108 QDCEPIWNERDEAVKSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D +F V F +S L+ ++ F+ P PE F+ Y + I W+
Sbjct: 165 VQIIGLPPRPVRDPNFEGVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWV 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW +
Sbjct: 225 GGETQALLLLGERLKVEQHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCM 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ P+ E+ L W+ GQTG+P ID+ MRQ
Sbjct: 343 -AKPDAEQ-LQRWRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDP+G YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L+ P +YI+EPW Q++ C+I YP+RI++ AS N +K + + I
Sbjct: 461 LQHVPKEYIHEPWLMSAEEQKRYECLIGVHYPDRIIDLSLASKRNMLAMKALRNSLI 517
>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
Length = 543
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 181/459 (39%), Positives = 232/459 (50%), Gaps = 108/459 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L DLD +Q G+L I QG P IF++L ++L K+CFE
Sbjct: 50 GTKDVGYNRMRFLLDSLQDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFE 109
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P+ T G PP YQ L+
Sbjct: 110 QDCEPIWSQRDASVKSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQ---MFLHT 166
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
++ GLPPRP D ++ +V F +S+ LQRE+ Q P PE F+ Y + I W
Sbjct: 167 VEIIGLPPRPTNDPNWNNVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWR 226
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGETEAL+ L ERL E +F+ G YL NQ P++ P S S L+FGCLSVRRFYW +
Sbjct: 227 GGETEALLLLQERLKVEQSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNV 286
Query: 211 HDHFNTIH--------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
HD F + + SH ITGQLIWREYFYTMS +N YD+M+ N ICLNIPW
Sbjct: 287 HDLFKNVQLQACVRGVQMTGGSH--ITGQLIWREYFYTMSVNNSNYDRMDGNEICLNIPW 344
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ----------------------------- 293
S P++EK L W+ GQTG+P ID MRQ
Sbjct: 345 ---SKPHEEK-LERWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWE 400
Query: 294 ------LRRLLDCTYCVCPVNF-----------------------GRRLDPDGIYIKRYV 324
L+ LLD + VC N+ +RLDPDG+YIK+YV
Sbjct: 401 HGVQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCSQAMAKRLDPDGLYIKQYV 460
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
PELR P +YI+EPW+ QE+ C+I YPE I++
Sbjct: 461 PELRNVPKEYIHEPWRMSAEDQERYECLIGVHYPEPIID 499
>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
gi|74960862|sp|O77059.1|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
Full=Blue light photoreceptor
gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
Length = 542
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 234/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF+ +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L +W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-ENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>gi|406855882|pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
gi|406855883|pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 234/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF+ +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L +W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-ENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
Length = 542
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 233/477 (48%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDENIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF+ +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLDDATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-EDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P +Y++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEYVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
Length = 542
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 232/477 (48%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L +L ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDESIRSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLDDATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-EDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
gi|205696352|sp|Q293P8.2|CRY1_DROPS RecName: Full=Cryptochrome-1
gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 233/477 (48%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L DLD QL+S G+LF+ +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAE 107
Query: 61 QDCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNF 90
DCE G++ + G PP YQ L+
Sbjct: 108 LDCEPIWNERDESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ G+PPRP D TF ++ L++ + F VP PE F+ Y + I W
Sbjct: 165 VQIIGVPPRPAIDAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL L ERL E +F+ G YL NQ +P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIHEG------RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL IPW
Sbjct: 285 HDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ P+ E L W+ GQTG+P ID MRQ
Sbjct: 343 -AKPD-ENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDP+G+YI+RYVPE
Sbjct: 401 LKHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L+ P +YI+EPW+ Q K C+I YPERI++ +A N + + + I
Sbjct: 461 LKNLPKEYIHEPWRLSAEQQVKFECLIGVHYPERIIDLSKAVKRNMMAMTALRNSLI 517
>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
Length = 542
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 233/477 (48%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF+ +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALHLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L +W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-EDLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
Length = 542
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 236/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P +IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNDRDESIRFLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R ++LF+ +P P+ F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + ++TGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ P KE L W+ GQTG+P ID MRQ
Sbjct: 343 -AKP-KEDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDP+G YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ + QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LINVPREFVHEPWRMSVEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKTLRNSLI 517
>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
Length = 542
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 233/477 (48%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL+ G+L + +G P IF++L ++ +LC E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNHRDETIRALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + +R +++F+ +P P F+ Y + I+W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE +AL+ L ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGEKQALLLLGERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ P KE L W+ GQTG+P ID MRQ
Sbjct: 343 -AKP-KEDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L + P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LVKVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLTMAVQRNMLAMKALRNSLI 517
>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
Length = 539
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 234/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L D+D QL+ G L + QG P IF++L + K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDIDMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVE 107
Query: 61 QDCEGV----------------------------KPYQSFPT--GSHPPRYQPCKTLLNF 90
QDCE + P T G P YQ L+
Sbjct: 108 QDCEPIWNERDEATKSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D +F V+ + + L++++ + P PE F+ Y + + W+
Sbjct: 165 VQIIGLPPRPIPDPNFEGVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWI 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL L ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALSLLGERLKVEQHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSM 284
Query: 211 HDHFNTIHEG------RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQMRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
S P+ ++ L W+ GQTG+P ID+ MRQ
Sbjct: 343 -SKPDADQ-LQRWRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDP+G YIK+YVPE
Sbjct: 401 LEHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L+ P ++I+EPW+ QE+ C++ YP+RI++ AS N +K + + I
Sbjct: 461 LKNVPKEFIHEPWRMSSEQQERYECLLGFHYPQRIIDLSLASKRNTMAMKALRNSLI 517
>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
Length = 542
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 234/478 (48%), Gaps = 106/478 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D Q+++ G+L + +G P IF++L +L K+C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNHRDETIRSLCHELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPE-MDFGDPLIRW 149
+ GLPPRP D +F M L R + + +P PE F+ Y + M F IRW
Sbjct: 165 VQILGLPPRPVNDARLEDASFVQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSK-IRW 223
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GGE +AL+ L+ERL E +F+ G Y+ NQ P++ P S S L+FGCLSVRRFYW+
Sbjct: 224 RGGERQALLLLDERLKVEQHAFEKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWS 283
Query: 210 LHDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
+HD F + + +ITGQLIWREYFYTMS +NP YD+M+ N ICL+IPW
Sbjct: 284 VHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMDGNEICLSIPWA 343
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------ 293
E L W+ GQTG+P IDA MRQ
Sbjct: 344 KRD----ETQLQKWRLGQTGFPLIDAAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEH 399
Query: 294 -----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVP 325
LR LLD + V CPV +RLDPDG YI++YVP
Sbjct: 400 GVQHFLRYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVP 459
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
EL+ P ++I+EPW+ L QE+ C+I YP+R+++ +A N +K + + I
Sbjct: 460 ELKNVPREFIHEPWRMNLQQQEQYECLIGVHYPDRLIDLSKAVKGNMLAMKTLRDSLI 517
>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
Length = 525
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 220/455 (48%), Gaps = 95/455 (20%)
Query: 10 YNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE----- 64
Y+ FLLECL DL+ L+S G +L + QG P+ +F+ L KLCF QDCE
Sbjct: 46 YHMNGFLLECLHDLNESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHE 105
Query: 65 ------------GVKPYQSFP------------TGSHPPRYQPCKTLLNFRDLSGLPPRP 100
++ Y+ G PP + ++ G PP+P
Sbjct: 106 RDIAAKNLCSELDIEVYEHVAHTLWDPMDIIASNGGTPPLTY--EMFVHVAMSVGDPPKP 163
Query: 101 KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL 160
D +++ V F T+ +LF VP Q PE G R GGET AL
Sbjct: 164 VADPEWKGVKFLTLEPFESNRFTLFGGVPTLSQI-GVPENPVGCRGRRIFGGETNALKHF 222
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
RL E +F+SG Y NQ PDL GPP S SAA+ G +SVR FYW +H+ F+ ++ G
Sbjct: 223 AIRLQAEETAFRSGFYQPNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRG 282
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
PP+ ITGQ+IWR+YFY MS NP +D+ NPICL IPW+ E++ WKNG
Sbjct: 283 NPPAWLGITGQIIWRDYFYAMSRMNPKFDKEVDNPICLQIPWV-----ENEEFFEKWKNG 337
Query: 281 QTGYPFIDAVMRQL-----------------------------------RRLLDCTYCVC 305
QTGYPFIDA MRQL +L+D + V
Sbjct: 338 QTGYPFIDAGMRQLNQEGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVN 397
Query: 306 PVN-----------------------FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
N +G+RL+P G YI+RYVPEL F +YI+EPWKAP
Sbjct: 398 SGNWMWVSSSAFERLLDCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAP 457
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ +Q ANCII +DYP ++V H + N +++K+
Sbjct: 458 IDIQRTANCIIGQDYPAQMVVHEEVLPRNLEWMKE 492
>gi|443724902|gb|ELU12703.1| hypothetical protein CAPTEDRAFT_226189 [Capitella teleta]
Length = 564
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 170/465 (36%), Positives = 224/465 (48%), Gaps = 102/465 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNR RFL +CL DLD+ + GG+L+I +G+P+ I L E TKL FEQD
Sbjct: 67 GTGTAGYNRMRFLHQCLEDLDKSFQKFGGRLYIFKGNPVDILAALFDEWQVTKLTFEQDP 126
Query: 64 EGVKPYQSF-----------------------------PTGSHPPR-YQPCKTLLNFRDL 93
E + + G +PP + K +LN +
Sbjct: 127 EPIWEDRDNKVKDLCMKRDVTYVERISHTLFHPDDVIEANGGNPPHTFSLMKQVLN---M 183
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G P RP D V+ +S +L + +Y + +P+ +W+GGE
Sbjct: 184 LGDPERPSSSPDLSLVSL-PLSNDFDDRCALDTL---KDFAGEYEMEEQEEPINKWIGGE 239
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
+ AL L RL E +FK G NQ PDL GPP + S L+FGCLSVR FYWA+HD
Sbjct: 240 SRALDLLQGRLKLEENAFKGGFLQPNQYRPDLIGPPLTLSPHLRFGCLSVRYFYWAIHDI 299
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
++ + E P +IT QLIWREYFY MS N Y QME NPICL IPW + +
Sbjct: 300 YSEVREELAPQ--SITSQLIWREYFYIMSVKNRNYAQMENNPICLQIPWYRD-----DNQ 352
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W+ G+TGYP+IDA M QLRR LL
Sbjct: 353 LERWEMGKTGYPWIDACMNQLRREGWIHHVGRHAVSCFLTRGDLWIHWEDGLKVFLKYLL 412
Query: 299 DCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
D + VC P+ +G R+DP G Y++RYVPELRQ P++Y+
Sbjct: 413 DADWSVCAGNWMWVSSSAFENCLQCPQCFSPIMYGMRMDPTGEYVRRYVPELRQVPLKYL 472
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
+ PWKAP VQEKA CI+ DYP +V+H AS + K ++ KA
Sbjct: 473 FHPWKAPKEVQEKAGCIVGTDYPAPMVDHNTASKDCKDRMQAVKA 517
>gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus]
gi|205694137|sp|B0WRR9.1|CRY1_CULQU RecName: Full=Cryptochrome-1
gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus]
Length = 499
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 180/345 (52%), Gaps = 65/345 (18%)
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
++ G PPRP F V FG + L E+ LFQ P PE F Y E + RW G
Sbjct: 119 NIIGEPPRPVGAPSFEFVEFGRLPSILSTELKLFQRAPVPEDFGIYYEGNADIARQRWTG 178
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE +AL L RL QE E+F+ G YL Q PD PP+S SAAL+FGCLSVR FYW +H
Sbjct: 179 GEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPSSMSAALRFGCLSVRMFYWCVH 238
Query: 212 DHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
D F + + P +ITGQLIWREYFYTMS HNP+Y ME NPICLNIPW +
Sbjct: 239 DLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPHYAVMELNPICLNIPW----YE 294
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQ----------------------------------- 293
K+ L+ WK G+TG+P IDA MRQ
Sbjct: 295 AKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQHF 354
Query: 294 LRRLLDCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELRQF 330
L+ LLD + VC PV RRLDP G Y+KRY+PEL +F
Sbjct: 355 LKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLDPKGEYVKRYLPELEKF 414
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
P Y++EPWKAP +QE+ C+I KDYP +VN + + N +
Sbjct: 415 PALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKM 459
>gi|406507545|gb|AFS34616.1| cryptochrome 1, partial [Clunio marinus]
Length = 378
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 186/324 (57%), Gaps = 40/324 (12%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGG-QLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
GT +GYNR +FLLE L DLD Q K G LFI QG P IFQ L + K+CFEQD
Sbjct: 47 GTKDVGYNRMKFLLESLLDLDEQFKQLGAPGLFIFQGKPTEIFQNLHDNIGINKICFEQD 106
Query: 63 CE---------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFRDLS 94
CE G++ + G P YQ LL+ ++
Sbjct: 107 CEYNERDNEIKYLSRELGIEVVEKVSHTLWNPEDIIRINGGFAPLTYQ---MLLHTVNVL 163
Query: 95 GLPPRP-KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
GLPPRP ++DF V FGT+ E + + L +++P PE F +PE D + W GGE
Sbjct: 164 GLPPRPVNNEVDFSQVNFGTIPEHHKINLRLMKSIPSPEDFLIFPENTGSDVYVNWNGGE 223
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
AL ++ +R+ E E+F SG YL NQ + DL G P S SAAL+FGCLSVRRFY+ +HD
Sbjct: 224 RHALEQMIDRVKHEEEAFASGTYLPNQANVDLMGSPKSMSAALRFGCLSVRRFYYTIHDK 283
Query: 214 FNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
FN + + + P +ITGQL+WREYFYTMS +NPYY Q++ NPICLNIPW ++
Sbjct: 284 FNEVQDKMVYKLPGGHHITGQLMWREYFYTMSINNPYYGQIKNNPICLNIPW----KSSE 339
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQL 294
E + WK G+TG P IDA MRQL
Sbjct: 340 EDEILKWKQGRTGVPIIDASMRQL 363
>gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis]
Length = 348
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 177/313 (56%), Gaps = 43/313 (13%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR R+LLE L DLD Q K HGG+L +++G P +F++L E KLCFEQDC
Sbjct: 44 GTKVVGYNRMRYLLEALDDLDNQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDC 103
Query: 64 EGV-------------------KPYQSF----------PTGSHPP-RYQPCKTLLNFRDL 93
E V K + S G PP YQ L+
Sbjct: 104 EPVWRARDDSVKNACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQ---MFLHTVAT 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP ++DF V FG++ ES E ++F PKPE + E + +IRW+GGE
Sbjct: 161 IGDPPRPVGEVDFTGVKFGSLPESFYNEFTVFDKTPKPEDLGVFLENE-DIRMIRWVGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL ++ +RL+ E E+F G YL +PDL GPP S S AL+FGCLSVR FYW++ D
Sbjct: 220 TTALKQMQQRLAVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDL 279
Query: 214 FNTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
F +H+GR SHF ITGQLIWREYFYTMS +NP Y QM NPICL+IPW P
Sbjct: 280 FRQVHQGRLTSNSASHF-ITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPW---KTPA 335
Query: 270 KEKYLNAWKNGQT 282
++ L W G+T
Sbjct: 336 GDE-LQRWVEGRT 347
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 149/426 (34%), Positives = 218/426 (51%), Gaps = 58/426 (13%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCEGVKPYQSFPTGSHPPR------YQPCKTLLNFRDL----SGLPP---RPKEDIDFRH 108
D E + Q TL + + G PP + + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVQISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 109 VTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEALIK 159
E++ EV T P + KY E+ F G P W GGETEAL +
Sbjct: 161 EPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTR 220
Query: 160 LNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
L L E +++ + + L PT S L+FGCLS R FY+ L D + + +
Sbjct: 221 LERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKK 278
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 279 NSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKWAE 332
Query: 280 GQTGYPFIDAVMRQLRR----------LLDC------------------TYCVCPVNFGR 311
G+TG+P+IDA+M QLR+ + C +C CPV FGR
Sbjct: 333 GRTGFPWIDAIMTQLRQEGWIHHLARHAVACFVTRGDLWISWEEGMKQFFHCYCPVGFGR 392
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
R DP+G YI+RY+P LR FP +YIY+PW AP +Q+ A C+I +YP+ +VNH +AS N
Sbjct: 393 RTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKVAKCLIGINYPKPMVNHAEASRLN 452
Query: 372 KQYLKK 377
+ +K+
Sbjct: 453 IERMKQ 458
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 218/463 (47%), Gaps = 104/463 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLLE L DLD L+ +LF+V+G P +F +L +E N T+L FE
Sbjct: 41 FAGSANVGVNRWRFLLESLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
D E + Y + N L P I+ + + + Q
Sbjct: 101 DSEPYGKERDAAIIKMAQEYGVETVVRNTHTLYN----PDRIIEMNNHSPPLTFKRFQAI 156
Query: 122 VSLFQTVPKP------EQFHK-----------------YPEMDF---GDPLIRWLGGETE 155
V+ + KP EQ + E+ F GD L W GGETE
Sbjct: 157 VNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETE 216
Query: 156 ALIKLNERLSQEIESFKSGVYLSNQVSPDLTG-----PPTSQSAALKFGCLSVRRFYWAL 210
AL +LN+ L ++ +++N P ++G PT S L+FGCLS R FY+ L
Sbjct: 217 ALERLNKHLDRK-------AWVANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNL 269
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
D F + P ++ GQL+WRE+FYT +NP +D ME NPIC+ IPW +
Sbjct: 270 RDLFMKLRRRSSPP-LSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPW-----DHN 323
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 324 PEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEE 383
Query: 297 -LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
LLD + C CPV FGRR DP G YI+RY+P+L+ +P +Y
Sbjct: 384 LLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNRY 443
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
IYEPW AP VQ+ ANCI+ DYP+ ++NH ++S N + +K+
Sbjct: 444 IYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQ 486
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYELDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEIPVETITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P GVQ+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 451 PDGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYELDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEIPVETITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P GVQ+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 451 PDGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQFHK------YPEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + + E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITAEVMSKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P GVQ+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGVQKVAKCVIGVNYPKPMVNHTEASRLNIERMKQ 486
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 217/459 (47%), Gaps = 96/459 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ G NR+RFLLECL DLD L+ +LF+++G P + +L +E T+L FE+
Sbjct: 56 FAGSCSKGVNRWRFLLECLEDLDSSLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEE 115
Query: 62 DCE-----------------GVKPYQSFPTGSHPPR-------YQPCKTLLNFRD---LS 94
D E GVK + P+ +P T F+D L
Sbjct: 116 DSEPFGRTRDKAISTLAQEAGVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLM 175
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGET 154
G+P P E ++ V + + +P E+ PE D P+ W+GGET
Sbjct: 176 GIPIYPAEALEAEDVE--GLDTFIDPNHEDKYGIPTLEELGFDPE-DVPPPM--WIGGET 230
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +L+ L E +++ + L P S L+FGCLS R FYW L + +
Sbjct: 231 EAKQRLDRHL--ERKAWVANFERPRMSPASLMASPAGLSPYLRFGCLSPRTFYWKLTELY 288
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ + + ++ GQL+WRE+F+T++ +N +D M NPIC+ IPW L
Sbjct: 289 QKVRK-TTNTPLSLHGQLLWREFFFTVACNNRQFDHMVDNPICIQIPW-----DKNTALL 342
Query: 275 NAWKNGQTGYPFIDAVMRQLRR-----------------------------------LLD 299
N W NG+TGYP+IDA+M QLR LLD
Sbjct: 343 NKWANGETGYPWIDAIMTQLRLEGWIHPLARHAVACFLTRGDLWISWEEGMKVFDEYLLD 402
Query: 300 CTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ C CPV FGRR DP+G Y+++Y+P L+ FP +YI+EP
Sbjct: 403 ADWSVNAGNWIWLSCSSFYQQFFHCYCPVKFGRRTDPNGDYVRKYLPFLKNFPSKYIFEP 462
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
W AP+ VQEKA CII KDYP IV+H +AS N + ++K
Sbjct: 463 WTAPIEVQEKAKCIIGKDYPLPIVDHAEASHRNIERMRK 501
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 220/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + +H+ +Q VP E+ +P G + W G
Sbjct: 179 EL---PKKPVGAVSSQHME--NCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 230
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL++L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 231 GETEALVRLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 284 YYRLWDLYRKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 340
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 341 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 397
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 398 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 457
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ ANCII DYP IVNH + S N + +K+
Sbjct: 458 PSRYIYEPWNAPESVQKAANCIIGVDYPRPIVNHAETSRLNIERMKQ 504
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 224/465 (48%), Gaps = 108/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLLE L DLD L+ +L +V+G P +F +L +E N T+L FE
Sbjct: 41 FAGSANVGVNRWRFLLESLEDLDTSLRKLNSRLSVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEG---------VKPYQSFPT-----GSHPPRYQPCKTL--------LNFRDLSGLPPR 99
D E +K Q + SH Y P + + L F+ + R
Sbjct: 101 DSEPYGKERDAAIIKMAQEYGVETVVRNSHT-LYNPDRIIEMNNHSPPLTFKRFQAIVNR 159
Query: 100 PKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYP---EMDF---GDPLIRWLGGE 153
++ T+++ Q Q ++ + P E+ F GD L W GGE
Sbjct: 160 ----LELPRKPLPTITQE-QMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGE 214
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG-----PPTSQSAALKFGCLSVRRFYW 208
TEAL +LN+ L ++ +++N P ++G PT S L+FGCLS R FY+
Sbjct: 215 TEALERLNKHLDRK-------AWVANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYY 267
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D F + P ++ GQL+WRE+FYT +NP +D ME NPIC+ IPW
Sbjct: 268 NLRDLFMKLRRRSSPP-LSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPW-----D 321
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ + L W G+TG+P+IDA+M QLR+
Sbjct: 322 HNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVF 381
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGRR DP G YI+RY+P+L+ +P
Sbjct: 382 EELLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPN 441
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIYEPW AP VQ+ ANCI+ DYP+ ++NH ++S N + +K+
Sbjct: 442 RYIYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQ 486
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 219/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ G +LF+V+G P +F +L +E T+L FE
Sbjct: 48 FAASSSVGINRWRFLLQSLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEY 107
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +T+++
Sbjct: 108 DSEPFGKERDAAIVKLAKEAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIISRM 167
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
DL P +P I H +Q VP E+ +P + WLG
Sbjct: 168 DL---PKKPVASIT--HQQMEMCKTEIQDNHDETYGVPSLEEL-GFPTESLAPAV--WLG 219
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 220 GETEALTRLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 272
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 273 YYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DR 329
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 330 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 386
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G Y++RY+P+L+ F
Sbjct: 387 VFDELLLDADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPKLKGF 446
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 447 PSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 493
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 221/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLDR L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 63 FAASSSVGINRWRFLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 122
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 123 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRM 182
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + G +E +Q VP E+ +P G + W G
Sbjct: 183 EL---PRKPVGSVTSQQME-GCQAE-IQESHDETYGVPSLEEL-GFPTEGLGPAV--WRG 234
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 235 GETEALARLDKHL--ERKAWVASYERPRMNASSLLASPTGLSPYLRFGCLSCRLFYYRLW 292
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 293 DLYRKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRNPEA- 348
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 349 --LAKWAEGKTGFPWIDAIMAQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 406
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP G YI+RY+P+L+ FP +YI
Sbjct: 407 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYI 466
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPW AP +Q+ A CII DYP IVNH +AS N + +K+
Sbjct: 467 YEPWNAPESIQKAAKCIIGVDYPRPIVNHAEASRLNIERMKQ 508
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 221/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEY 100
Query: 62 DCE-----------------GVKPYQ-------------SFPTGSHPPRYQPCKTLLNFR 91
D E GV+ + F G P Y+ +TL++
Sbjct: 101 DSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P E I G S + + VP E+ E G W G
Sbjct: 161 DPVEMP---AETITAE--IMGKCSTPVSDDHDDKFGVPSLEELGFETE---GLSTAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + PS ++ GQL+WRE+FYT + +NP++D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNSTPS-LSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPW--DRNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W GQTG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP ++I
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPESVQKVAKCIIGVHYPKPMVNHAEASRINIERMKQ 486
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 221/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEY 100
Query: 62 DCE-----------------GVKPYQ-------------SFPTGSHPPRYQPCKTLLNFR 91
D E GV+ + F G P Y+ +TL++
Sbjct: 101 DSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P E I G S + + VP E+ E G W G
Sbjct: 161 DPVEMP---AETITAE--IMGKCSTPVSDDHDNKFGVPSLEELGFETE---GLSTAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + PS ++ GQL+WRE+FYT + +NP++D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNSTPS-LSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPW--DRNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W GQTG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP ++I
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPESVQKVAKCIIGVHYPKPMVNHAEASRINIERMKQ 486
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 221/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEY 100
Query: 62 DCE-----------------GVKPYQ-------------SFPTGSHPPRYQPCKTLLNFR 91
D E GV+ + F G P Y+ +TL++
Sbjct: 101 DSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P E I G S + + VP E+ E G W G
Sbjct: 161 DPVEMP---AETITAE--IMGKCSTPVSDDHDNKFGVPSLEELGFETE---GLSTAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + PS ++ GQL+WRE+FYT + +NP++D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNSTPS-LSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPW--DRNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W GQTG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP ++I
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPESVQKVAKCIIGVHYPKPMVNHAEASRINIERMKQ 486
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIIRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVMEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 221/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F KL +E ++L FE
Sbjct: 45 FAASSSGGVNRWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEY 104
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 105 DSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIISRM 164
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P RP + + + ++R VP E+ + E + G + W G
Sbjct: 165 EL---PRRPAPSVTRQQME--ACRAEIKRNHDETYGVPSLEELGFHSE-NKGHAI--WPG 216
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L+ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 217 GETEALARLDRHL--ERKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQ 274
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + PP ++ GQL+WRE+FYT + +NP +DQME NPIC+ IPW + +P
Sbjct: 275 ELYQKVKKNSPPP-LSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPW--DKNP--- 328
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
K L W G+TG+P+IDA+M QLR+
Sbjct: 329 KALAKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDEL 388
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP G Y+KRY+P L+ FP +YI
Sbjct: 389 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYI 448
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPW AP VQ++A CII DYP+ IVNH +AS N + +K+
Sbjct: 449 YEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIERMKQ 490
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 451 PESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 150/465 (32%), Positives = 214/465 (46%), Gaps = 109/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E + T L FE+
Sbjct: 144 FAGSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEE 203
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G++ + G P Y + ++
Sbjct: 204 DPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASM 263
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR--- 148
D PP+P+ I + G + L + VP E E+ F +R
Sbjct: 264 DA---PPQPETTITLEAI--GGATTPLYDDHDDKYGVPTLE------ELGFETEALRPPV 312
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGETEAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 313 WIGGETEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 370
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW S
Sbjct: 371 QLTDLYKKIKKACPP--LSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNS-- 426
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 427 ---EALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 483
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP
Sbjct: 484 EELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPT 543
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
++I+EPW AP VQ A C+I KDYP +VNH AS N + +K+
Sbjct: 544 RFIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIASRANMERIKQ 588
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
+ T E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLETPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNPEA---LAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 451 PESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 217/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G + L + VP E+ + G W G
Sbjct: 158 --SKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 217/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G + L + VP E+ + G W G
Sbjct: 158 --SKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 217/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G + L + VP E+ + G W G
Sbjct: 158 --SKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + +H+ +Q VP E+ +P G + W G
Sbjct: 179 EL---PKKPVGAVSSQHME--NCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 230
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 231 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 284 YYRLWDLYRKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 340
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 341 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 397
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 398 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 457
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 458 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 504
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 218/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWDITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLI--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G + L + VP E+ + G P W G
Sbjct: 158 --SKMEPLEIPVETITSEVIGKCTTPLSDDHDEKYGVPSLEELGFDTD---GLPSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 222/460 (48%), Gaps = 98/460 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHV 109
D E +K + R TL + + G PP + R
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYK----RFQ 154
Query: 110 TFGTMSESLQREVS-----LFQTVPKP---EQFHKY-----PEMDF---GDPLIRWLGGE 153
T + E L+ V L + P + KY E+ F G P W GGE
Sbjct: 155 TLISKMEPLEIPVETITSELIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGE 214
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
TEAL +L L E +++ + + L PT S L+FGCLS R FY+ L D
Sbjct: 215 TEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDL 272
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P +
Sbjct: 273 YKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EA 326
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W G+TG+P+IDA+M QLR+ LL
Sbjct: 327 LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLL 386
Query: 299 DCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + C CPV FGRR DP+G YI+RY+P LR FP +YIY+
Sbjct: 387 DADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYD 446
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 447 PWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 222/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLDR L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 31 FAASSSVGINRWRFLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFQEWGVTRLTFEY 90
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 91 DSEPFGKERDTAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRM 150
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + G +E +Q VP E+ +P G + W G
Sbjct: 151 EL---PRKPVGSVTSQQME-GCRAE-IQESHDETYGVPSLEEL-GFPTEGLGPAV--WQG 202
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 203 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 255
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 256 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 312
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 313 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 369
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 370 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 429
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A C+I DYP IVNH +AS N + +K+
Sbjct: 430 PSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNHAEASRLNIERMKQ 476
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N +KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNISKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGLEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITAEVMSTCITPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P GVQ+ A C I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGVQKAAKCTIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 51 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 110
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 111 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 170
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 171 EL---PKKPAVAVSSQQME--SCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 222
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 223 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 275
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 276 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 332
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 333 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 389
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 390 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 449
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 450 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 496
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 222/458 (48%), Gaps = 94/458 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPK-PEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
+L L ++ + +F+ +N L PT S L+FGCLS R FY+ L D +
Sbjct: 219 TRLERHLERKASVANFERPRMNAN----SLLASPTGLSPYLRFGCLSCRLFYFKLTDLYK 274
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
+ + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L
Sbjct: 275 KVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALA 328
Query: 276 AWKNGQTGYPFIDAVMRQLRR-----------------------------------LLDC 300
W G+TG+P+IDA+M QLR+ LLD
Sbjct: 329 KWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDA 388
Query: 301 TY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
+ C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW
Sbjct: 389 DWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPW 448
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
AP +Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 449 NAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 222/458 (48%), Gaps = 94/458 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPK-PEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
+L L ++ + +F+ +N L PT S L+FGCLS R FY+ L D +
Sbjct: 219 TRLERHLERKASVANFERPRMNANS----LLASPTGLSPYLRFGCLSCRLFYFKLTDLYK 274
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
+ + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L
Sbjct: 275 KVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALA 328
Query: 276 AWKNGQTGYPFIDAVMRQLRR-----------------------------------LLDC 300
W G+TG+P+IDA+M QLR+ LLD
Sbjct: 329 KWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDA 388
Query: 301 TY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
+ C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW
Sbjct: 389 DWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPW 448
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
AP +Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 449 NAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|354486342|ref|XP_003505340.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Cricetulus
griseus]
Length = 583
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 216/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 37 FAGSSNVGINRWRFLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 96
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 97 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 153
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G L + VP E+ + G W G
Sbjct: 154 --SKMEPLEMPAETITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 208
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 209 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 266
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 267 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 320
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 321 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 380
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 381 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 440
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 441 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 482
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 221/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F KL +E ++L FE
Sbjct: 45 FAASSSGGVNRWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEY 104
Query: 62 DCE-----------------GVKP--------YQSFPT----GSHPP-RYQPCKTLLNFR 91
D E GV+ Y S G PP Y+ + +++
Sbjct: 105 DSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRM 164
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L PR R +E ++R VP E+ + E P I W G
Sbjct: 165 EL----PRRLAPSVTRQQMEACRAE-IKRNHDETYGVPSLEELGFHSENK--GPAI-WPG 216
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L+ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 217 GETEALARLDRHL--ERKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQ 274
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + PP ++ GQL+WRE+FYT + +NP +DQME NPIC+ IPW + +P
Sbjct: 275 ELYQKVKKNSPPP-LSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPW--DKNP--- 328
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
K L W G+TG+P+IDA+M QLR+
Sbjct: 329 KALAKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDEL 388
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP G Y+KRY+P L+ FP +YI
Sbjct: 389 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYI 448
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPW AP VQ++A CII DYP+ IVNH +AS N + +K+
Sbjct: 449 YEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIERMKQ 490
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 179 EL---PKKPAVAVSSQQME--SCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 230
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 231 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 284 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 340
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 341 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 397
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 398 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 457
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 458 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 504
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 216/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G L + VP E+ + G W G
Sbjct: 158 --SKMEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P VQ+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 220/460 (47%), Gaps = 98/460 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHV 109
D E +K S R TL + + G PP + R
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYK----RFQ 154
Query: 110 TFGTMSESLQREVSLFQ-------TVPKPEQF-HKY-----PEMDF---GDPLIRWLGGE 153
T + E L+ V T P + KY E+ F G W GGE
Sbjct: 155 TLISKMEPLEIPVETITSDVIEKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGE 214
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
TEAL +L L E +++ + + L PT S L+FGCLS R FY+ L D
Sbjct: 215 TEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDL 272
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P +
Sbjct: 273 YKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EA 326
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W GQTG+P+IDA+M QLR+ LL
Sbjct: 327 LAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLL 386
Query: 299 DCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + C CPV FGRR DP+G YI+RY+P LR FP +YIY+
Sbjct: 387 DADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYD 446
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 447 PWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQ 486
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 222/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E ++L FE
Sbjct: 39 FAASSSGGVNRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEY 98
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 99 DSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRM 158
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P RP + + + ++R VP ++ + E+ P I W G
Sbjct: 159 EL---PRRPAPSVTRQQME--ACRAEIKRNHDETYGVPSLDELGFHSEIK--GPSI-WPG 210
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L+ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 211 GETEALARLDRHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 263
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + + PP ++ GQL+WRE+FYT + +NP +DQME NPIC+ IPW +
Sbjct: 264 YYRLKELYKKVKKNSPPP-LSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPW--DK 320
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P K L W G+TG+P+IDA+M QLR+
Sbjct: 321 NP---KALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVK 377
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G Y++RY+P L+ F
Sbjct: 378 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPVLKAF 437
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ++A CII DYP+ IVNH +AS N + +K+
Sbjct: 438 PSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIERMKQ 484
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 153/466 (32%), Positives = 225/466 (48%), Gaps = 110/466 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLI--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVS-LFQTVPKPEQFHKYPEMDF---GDPLI 147
S + P +I +T SE +++ + LF + E+ F G P
Sbjct: 158 --SKMEPL---EIPVETIT----SEIIEKCTTPLFDDHDEKYGVPSLEELGFDTDGLPSA 208
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
W GGETEAL +L L E +++ + + L PT S L+FGCLS R FY
Sbjct: 209 VWPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +
Sbjct: 267 FKLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKN 323
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P + L W G+TG+P+IDA+M QLR+
Sbjct: 324 P---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKV 380
Query: 297 ----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CP +FGRR DP+G YI+RY+P LR FP
Sbjct: 381 FEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPASFGRRTDPNGDYIRRYLPVLRGFP 440
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 441 AKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQ 486
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L P S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 221/462 (47%), Gaps = 103/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++ N++RFLLE L DLD+ L+ +LF+++G P + KL +E T L FE+
Sbjct: 49 FAGSSNVDINKWRFLLESLEDLDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEE 108
Query: 62 DCE--GVKPYQSFPT------------GSHPPRYQPCKTL--------LNFRDLSGL--- 96
D E G Q+ T SH Y P K + L +R +
Sbjct: 109 DPEPFGRVRDQNIITMCKDFNIEVITRASHT-LYHPQKIIEKNGGKAPLTYRQFQNIIAS 167
Query: 97 ---PPRPKEDIDFRHVTFG--TMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
PP P+ DI F + G M ES+ S VP E+ + D P + W G
Sbjct: 168 VDAPPPPESDITFESIGRGYTPMDESMDDRFS----VPTLEELGF--DTDGLMPAV-WHG 220
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + L T S L+FGCLSVR F+ L
Sbjct: 221 GETEALTRLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSVRLFHQQLT 278
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + I + +PP ++ GQ++WRE+FY + +NP +D+M NPIC+ IPW +
Sbjct: 279 NLYKKIKKAQPP--LSLHGQVLWREFFYCAATNNPNFDKMIGNPICVQIPW-----DSNA 331
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 332 EALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 391
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR++DP+G +IK+Y P L+ FP+QYI
Sbjct: 392 LLDADWSVNAGTWMWLSCSSFFHQFFHCYCPVRFGRKVDPNGDFIKKYQPVLKNFPLQYI 451
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW AP VQ A C+I KDYP +VNH++ S N + +K+
Sbjct: 452 HEPWNAPESVQRAAKCVIGKDYPLPMVNHLEVSQLNIERMKQ 493
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGAVSSQQMK--SCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQ 486
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 200
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 201 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 252
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 253 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 305
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 306 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 362
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 363 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 419
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 420 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAF 479
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 480 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 526
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 151/464 (32%), Positives = 219/464 (47%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ + G N ++FLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FGGSSNFGANEWKFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHV 109
D E +K S R TL + + G PP +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPP-------LTYK 151
Query: 110 TFGTMSESLQREVSLFQTVPKPEQFHK-----------------YPEMDF---GDPLIRW 149
F T+ ++ + +T+ PE HK E+ F G P W
Sbjct: 152 RFQTLISKMEPLATPVETI-TPEVMHKCVTPLSDEHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GGETEAL +L L E +++ + + L PT S L+FGCLS R FY+
Sbjct: 211 PGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFK 268
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 269 LTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP- 324
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 --EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGRR DP+G YI+RY+P LR FP +
Sbjct: 383 ELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 443 YIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 200
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 201 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 252
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 253 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 305
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 306 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 362
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 363 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 419
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 420 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAF 479
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 480 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 526
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 36 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 95
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 96 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 155
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + +Q+ VP E+ +P G + W G
Sbjct: 156 EL---PKKPAVAVSSSRME--SCRAEIQKNHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 207
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 208 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 260
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D++E NPIC+ IPW +
Sbjct: 261 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRVEGNPICIQIPW--DR 317
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 318 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 374
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 375 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 434
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 435 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 481
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVVEKCVTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +V+H +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVHHAEASRLNIERMKQ 486
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KRNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQ 486
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 200
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 201 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 252
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 253 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 305
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 306 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 362
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 363 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 419
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 420 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAF 479
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 480 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 526
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 79 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 138
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 139 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 198
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 199 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 250
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 251 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 303
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 304 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 360
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 361 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 417
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 418 VFDELLLDADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 477
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 478 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 524
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 217/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F L +E T+L FE
Sbjct: 61 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPALFQEWGVTRLTFEY 120
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 121 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRM 180
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 181 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 232
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 233 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 285
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 286 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 342
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 343 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 399
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 400 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 459
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 460 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 506
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 224/465 (48%), Gaps = 108/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E N T+L FE
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEG---------VKPYQSFPT-----GSHP----------PRYQPCKTLLNFRDLSG-- 95
D E +K Q F SH P T F+ +
Sbjct: 101 DPEPYGKERDGAIIKMAQEFGVETVVRNSHTLYNLDRIIELNNNSPPLTFKRFQTIVSRL 160
Query: 96 -LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYP---EMDFGD---PLIR 148
LP RP I + + +S QR++ +Q + P E+ F P
Sbjct: 161 ELPRRPLPAITQQQM------DSCQRQIG-----DNHDQLYSIPSLEELGFRTERLPPAV 209
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GGE+EAL +L++ L +++ + + V + L PT S L+FGCLS R Y+
Sbjct: 210 WRGGESEALDRLSKHLDKKV--WVASVEHTRVNKCSLYASPTGLSPYLRFGCLSCRVLYY 267
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 268 NLRELYMKLRKRCSPP-LSLFGQLLWREFFYTAATNNPNFDRMEGNPICVQIPW--DQNP 324
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 ---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWVSGMKVF 381
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGRR DP G YI+RY+P L+ FP
Sbjct: 382 EELLLDAGWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPILKDFPN 441
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIYEPW AP VQ+ ANC++ DYP+ +VNH ++S N + +K+
Sbjct: 442 RYIYEPWNAPESVQKAANCVVGVDYPKPMVNHAESSRLNIERMKQ 486
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 46 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 105
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 106 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRM 165
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 166 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 217
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 218 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 270
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 271 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 327
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 328 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 384
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 385 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 444
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 445 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 491
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGSVTSQQMD--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 217/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 44 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 103
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 104 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 163
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + +Q VP E+ +P G + W G
Sbjct: 164 EL---PKKPVGAVTSQQME--NCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 215
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 216 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 268
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 269 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 325
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 326 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 382
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 383 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 442
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 443 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 489
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGAVSSQQME--SCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 210/462 (45%), Gaps = 103/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 82 FAGSSNVGINKWRFLLQCLEDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 141
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G++ + G P Y + ++
Sbjct: 142 DPEPFGKVRDHNISEMCKELGIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASM 201
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D PP+P+ I + T + + VP E+ + P+ W+G
Sbjct: 202 DA---PPQPEPAITLDTIANATTPQYEDHDDKY--GVPTLEEL-GFETEGLKPPI--WVG 253
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + L T S L+FGCLS R FY+ L
Sbjct: 254 GETEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLT 311
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 312 DLYKKIKKACPP--LSLHGQLLWREFFYCAATKNPNFDKMAGNPICVQIPW-----DRNA 364
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 365 EALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 424
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +YI
Sbjct: 425 LLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYI 484
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW AP VQ A CII K+YP +VNH AS N + +K+
Sbjct: 485 HEPWNAPETVQRTAKCIIGKEYPLPMVNHAIASRANMERIKQ 526
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 217/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 49 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 108
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 109 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRM 168
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 169 EL---PKKPVGSVTSQQME--SCRAEIQENHDEAYGVPSLEEL-GFPTEGLGPAV--WQG 220
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 221 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 273
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 274 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 330
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 331 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 387
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P L+ F
Sbjct: 388 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPMLKGF 447
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 448 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 494
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 218/462 (47%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E +L +E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G+ PP Y+ + ++N
Sbjct: 101 DSEPFGKERDAAIQKLANEAGVEVMVRISHTLYNLDKIIELNGNQPPLTYKRFQAVINRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P E I F + S + VP E+ E G W G
Sbjct: 161 DAVEMP---AETITFEVLKNCVTPISEDHDEKF--GVPSLEELGFETE---GLTTAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL++L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALMRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+M+ NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNHTPP-LSLYGQLLWREFFYTTATNNPCFDKMDGNPICVQIPW--DRNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHGVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEEVQKAAKCIIGVHYPKPMVNHAEASRINIERMKQ 486
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 81 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 140
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 141 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 200
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 201 EL---PKKPVGLVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 252
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 253 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 305
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 306 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 362
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 363 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 419
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 420 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAF 479
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 480 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 526
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 224/464 (48%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E T+L FE
Sbjct: 41 FAGSANVGINRWRFLLEALEDLDNSLKKLNSRLFVVKGQPTDVFPRLLKEWKVTRLTFEY 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQP---------CKTLLNFRDL----SGLPP----RPKEDI 104
D E PY G+ Q TL N + S PP R + +
Sbjct: 101 DPE---PYGKERDGAIIKMAQEFGVETIVRNSHTLYNLDRIIEMNSNNPPLTFKRFQTIV 157
Query: 105 DFRHVTFGTMSESLQREVSLFQT--VPKPEQFHKYP---EMDF---GDPLIRWLGGETEA 156
+ ++ Q+++ +T +Q + P E+ F G P W GGE+EA
Sbjct: 158 RRLELPRRPLAPITQQQMDKCRTKIADNHDQLYSIPSLEELGFRTEGLPAAVWRGGESEA 217
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALH 211
L +LN+ L ++ V+++N P L PT S L+FGCLS R Y+ L
Sbjct: 218 LDRLNKHLDKK-------VWVANLEHPRVNTCSLYASPTGLSPYLRFGCLSCRVLYYNLR 270
Query: 212 DHFNTI--HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ + + H P S F GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 ELYMKLCKHSSPPLSLF---GQLLWREFFYTAATNNPNFDRMEGNPICVQIPW--DQNPE 325
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 326 A---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHVARHAVACFLTRGDLWISWESGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGRR DP G YI+RY+P L+ +P +
Sbjct: 383 ELLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPILKDYPNR 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIYEPW AP VQ+ ANC++ DYP+ ++NH + S N + +K+
Sbjct: 443 YIYEPWNAPESVQKAANCVVGVDYPKPMINHAEGSRLNIERMKQ 486
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 223/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E ++L FE
Sbjct: 45 FAASSSGGVNRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEY 104
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 105 DSEPFGKERDAVIMKLAKEGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRM 164
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
++ P RP + + + ++R VP E+ + E + G + W G
Sbjct: 165 EI---PRRPAPSVTRQQME--ACRAEIKRNHDETYGVPSLEELGFHRE-NKGSAI--WPG 216
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L+ L ++ +++N P L PT S L+FGCLS + F
Sbjct: 217 GETEALARLDRHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCKLF 269
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + + PP ++ GQL+WRE+FYT + +NP +DQME NPIC+ IPW +
Sbjct: 270 YYRLQELYRKVKKNNPPP-LSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPW--DK 326
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P K L W G+TG+P+IDA+M QLR+
Sbjct: 327 NP---KALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVK 383
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP+G +I+RY+P L+ F
Sbjct: 384 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPVLKAF 443
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ++A CII DYP+ IVNH +AS N + +K+
Sbjct: 444 PSRYIYEPWSAPESVQKQAKCIIGIDYPKPIVNHAEASSMNIERMKQ 490
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 219/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +L +++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E ++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERRAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 221/471 (46%), Gaps = 120/471 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLI 147
+L PK+ + VT M ES + E+ VP E+ +P G +
Sbjct: 180 EL------PKKPVGL--VTSQQM-ESCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV- 228
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLS 202
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 229 -WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLS 280
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 281 CRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW 339
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 340 --DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWE 394
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP G YI+RY+P+
Sbjct: 395 SGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPK 454
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
L+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 455 LKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 221/471 (46%), Gaps = 120/471 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 56 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 115
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 116 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 175
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLI 147
+L PK+ + VT M ES + E+ VP E+ +P G +
Sbjct: 176 EL------PKKPVGL--VTSQQM-ESCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV- 224
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLS 202
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 225 -WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLS 276
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 277 CRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW 335
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 336 --DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWE 390
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP G YI+RY+P+
Sbjct: 391 SGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPK 450
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
L+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 451 LKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 501
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/496 (31%), Positives = 233/496 (46%), Gaps = 108/496 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N T+L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNITRLSYEY 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLN-------------FRDL----------SGLPP 98
D E P G R K L N DL S L
Sbjct: 101 DSE--------PFGKE--RDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTY 150
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVP----KPEQFH--KYPEMDF---GDPLIRW 149
+ + + R T +E++ EV T P E+F E+ F G W
Sbjct: 151 KRFQTLISRMEAVETPAETITAEVMGTCTTPVSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GGETEAL +L L E +++ + + L PT S L+FGCLS + FY+
Sbjct: 211 PGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCQLFYFK 268
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 269 LTDLYRKVKKNSSPP-LSLYGQLLWREFFYTTATNNPRFDKMEGNPICVQIPW--DKNPE 325
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 326 A---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV+FGRR DP+G YI+RY+P LR FP +
Sbjct: 383 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAK 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK--EKANCIINKDYPER 391
YIY+PW AP VQ+ A CII YP+ +V+H +AS N + +K+ ++ +C
Sbjct: 443 YIYDPWTAPESVQKAAKCIIGVHYPKPMVHHAEASRLNIERMKQIYQQLSCYCGLGLLAT 502
Query: 392 IVNHVQASLENKQNVK 407
+ ++ + EN +K
Sbjct: 503 VPSNPNGNGENSTTLK 518
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 221/471 (46%), Gaps = 120/471 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLI 147
+L PK+ + VT M ES + E+ VP E+ +P G +
Sbjct: 180 EL------PKKPVGL--VTSQQM-ESCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV- 228
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLS 202
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 229 -WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLS 280
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 281 CRLFYYRLWDLYKRVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW 339
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 340 --DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWE 394
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP G YI+RY+P+
Sbjct: 395 SGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPK 454
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
L+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 455 LKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 224/473 (47%), Gaps = 111/473 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G N++RFLL+CL+DLD LK +LF+++G P KL R+ T FE+
Sbjct: 42 FAGASNVGINKWRFLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEE 101
Query: 62 DCE-----------------GVKP--------YQ-----SFPTGSHPPRYQPCKTLLNFR 91
D E G+ YQ + G P Y + LL
Sbjct: 102 DPEPFGRVRDQNIKVMCSEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECI 161
Query: 92 DLSGLPPR---PKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR 148
D PP P D +F G ++ + VP E+ + E++ +
Sbjct: 162 D----PPERAVPSIDKEF----LGNAFTPIKYDHDEIFGVPTLEEL-GFKEINNITRHV- 211
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGETEALI+L L E ++F + L PT + LKFGCLS R F+
Sbjct: 212 WVGGETEALIRLQCHL--ERKAFIASFGKPKMTPQSLVASPTGLAPYLKFGCLSTRLFFS 269
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L++ + I + +PP ++ GQL+WR++FY S +NP +D+M NPIC+ IPW + +P
Sbjct: 270 ELNELYKKIRKSQPP--LSLHGQLLWRDFFYCASTNNPNFDRMVGNPICVQIPW--DKNP 325
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L+ W NGQTGYP+IDA+M QLR+
Sbjct: 326 ---RALSKWANGQTGYPWIDAIMIQLRQEGWIHCIARHAVACFLTRGDLWLSWEEGMKVF 382
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR++DP+G YI+RY+P L P
Sbjct: 383 DELLLDADWSVNAGYWMWYSCSSFYQEFIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPN 442
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK---KEKANC 382
QYI+EPW AP +Q ANCII DYP IVNH+ AS N + +K ++ +NC
Sbjct: 443 QYIHEPWLAPESIQFSANCIIGIDYPLPIVNHINASKINLERMKLAYQQLSNC 495
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 217/464 (46%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E G+ Q G PP Y + ++
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVACM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D+ P P + F V G+ ++ + VP E+ + P+ W+G
Sbjct: 179 DV---PEPPVPTVTFACV--GSAYTPVKEDHDDHYGVPTLEEL-GFDTEGLLPPV--WVG 230
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 231 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 286
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + +NP +D+M+ NPIC+ IPW N
Sbjct: 287 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATNNPNFDRMQGNPICVQIPW----DKN 340
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
E L W NGQTG+P+IDA+M QLR
Sbjct: 341 IEA-LAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 399
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CP+ FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 400 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPIRFGRKADPNGDYIRRYLPVLKNFPTR 459
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL VQ A CII KDYP +VNH ++S N + +K+
Sbjct: 460 YIHEPWNAPLSVQRAAKCIIGKDYPLPMVNHSKSSRINIERMKQ 503
>gi|302745160|gb|ADL62683.1| cryptochrome 3, partial [Phreatichthys andruzzii]
Length = 475
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 215/460 (46%), Gaps = 97/460 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E N T+L FE
Sbjct: 19 FAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 78
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
D E + Y + N L P I+ + + + Q
Sbjct: 79 DSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYN----PDRIIEMNNHSPPLTFKRFQAI 134
Query: 122 VSLFQTVPKP-------------EQFHKYPEMDFGDPLIR-------------WLGGETE 155
V+ + KP Q + +G P + W GGETE
Sbjct: 135 VNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEELGFKTQRDSSHVWKGGETE 194
Query: 156 ALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
A+ +LN+ L ++ + +F+ ++ Q L PT S L+FGCLS R FY+ L +
Sbjct: 195 AMERLNKHLDRKGWVANFERPRIITAQ---SLFASPTGLSPYLRFGCLSCRVFYYNLREL 251
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
F + P ++ GQL+WRE+FYT +NP +D+ME NPIC+ IPW + +
Sbjct: 252 FMKLRRRSSPP-LSLFGQLLWREFFYTAGTNNPNFDRMEGNPICVQIPW-----DHNPEA 305
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W G+TG+P+IDA+M QLR+ LL
Sbjct: 306 LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLL 365
Query: 299 DCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + C CPV FGRR DP G YI+RY+P+L+ +P YIYE
Sbjct: 366 DADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNCYIYE 425
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
PW AP VQ+ ANCI+ DYP+ ++NH ++S N + +K+
Sbjct: 426 PWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQ 465
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 217/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 48 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 107
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 108 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRM 167
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 168 EL---PKKPVGSVTSQQME--SCRADIQESHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 219
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 220 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 272
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 273 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 329
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 330 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 386
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P L+ F
Sbjct: 387 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGF 446
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 447 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 493
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 217/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 48 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 107
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 108 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRM 167
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 168 EL---PKKPVGSVTSQQME--SCRADIQESHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 219
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 220 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 272
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 273 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 329
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 330 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 386
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P L+ F
Sbjct: 387 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGF 446
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 447 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 493
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 221/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 50 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEY 109
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G+ PP Y+ + +++
Sbjct: 110 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRM 169
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P I + + T +Q VP E+ +P D P + W G
Sbjct: 170 EL---PKKPVSSIVSQQME--TCKVDIQENHDDVYGVPSLEEL-GFP-TDGLAPAV-WQG 221
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 222 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 274
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 275 YYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DK 331
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 332 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 388
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G Y+KRY+P+L+ F
Sbjct: 389 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGF 448
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 449 PSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 495
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 220/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 47 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 106
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 107 DSEPFGKERDAAIVKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 166
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + G +E +Q VP E+ +P G + W G
Sbjct: 167 EL---PKKPVSCVTSQQME-GCKAE-IQDNHDDTYGVPSLEELG-FPTDGLGPAV--WQG 218
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 219 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 271
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 272 YYRLWDLYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 328
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 329 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 385
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G +I+RY+P+L+ F
Sbjct: 386 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDFIRRYLPKLKAF 445
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A C+I DYP IVNH + S N + +K+
Sbjct: 446 PSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMKQ 492
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 221/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 50 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 109
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G+ PP Y+ + +++
Sbjct: 110 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRM 169
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P I + + T +Q VP E+ +P D P + W G
Sbjct: 170 EL---PKKPVSSIVSQQME--TCKVDIQENHDDVYGVPSLEEL-GFP-TDGLAPAV-WQG 221
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 222 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 274
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 275 YYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DK 331
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 332 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 388
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G Y+KRY+P+L+ F
Sbjct: 389 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGF 448
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 449 PSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 495
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 217/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+V+G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNLGVNRWRFLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D P P E + + G + + VP E+ E G P W G
Sbjct: 161 DP---PEMPVETLS--NSIMGCCVTPVSEDHGDKYGVPSLEELGFDIE---GLPSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKTSTPP-LSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G +I+RY+P LR FP +YI
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQ 486
>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome-2, partial [Taeniopygia guttata]
Length = 540
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 220/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F T +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 8 FAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 67
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 68 DSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRM 127
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + T +Q VP E+ +P D P + W G
Sbjct: 128 EL---PKKPVSTVISQQME--TCKVDIQENHDDVYGVPSLEEL-GFP-TDGLAPAV-WQG 179
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 180 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 232
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 233 YYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DR 289
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 290 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 346
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G Y+KRY+P+L+ F
Sbjct: 347 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGF 406
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 407 PSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 453
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 149/467 (31%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWELYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 217/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 180 EL---PKKPVGSVTSQQME--SCRADIQDNHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 232 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 284
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 285 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 342 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 398
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P L+ F
Sbjct: 399 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGF 458
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 459 PSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 217/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+V+G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNLGVNRWRFLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D P P E + + G + + VP E+ E G P W G
Sbjct: 161 DP---PEMPVETLS--NSIMGCCVTPVAEDHGDKYGVPSLEELGFDIE---GLPSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKTSTPP-LSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G +I+RY+P LR FP +YI
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQ 486
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 216/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE
Sbjct: 41 FAGSSSVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G+ PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYDLDKIIELNGAQPPLTYKRFQTLISRL 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P D G + + VP E+ E G P W G
Sbjct: 161 DPPEMPVETLSD-----TLMGRCVTPISEDHGDKYGVPSLEELGFDIE---GLPTAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G +I+RY+P LR FP +YI
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ A CII YP+ +V+H +AS N + +K+
Sbjct: 445 YDPWNAPESVQAAAKCIIGVHYPKPMVHHAEASRLNIERMKQ 486
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 150/471 (31%), Positives = 217/471 (46%), Gaps = 120/471 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+ L DLD L+ +LF+++G P +F +L +E T+L +E
Sbjct: 41 FAGSSNVGINRWRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEY 100
Query: 62 DCE--------GVKPYQS----------------------FPTGSHPPRYQPCKTLLNFR 91
D E +K S G P Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVTVRTSHTLYELDKIIELNGGQSPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHK------YPEMDF--- 142
D +P +ES+ E+ T P E + E+ F
Sbjct: 161 DPVEVP-----------------AESITAEIMGKCTTPLSEDHDEKFGVPSLEELGFDTE 203
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
G W GGETEAL +L L E +++ + + L PT S L+FGCLS
Sbjct: 204 GLSSAVWPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLS 261
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 262 CRLFYFKLTDLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPCFDKMESNPICVQIPW 320
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 321 --DRNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWE 375
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP+G YI+RY+P
Sbjct: 376 EGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPV 435
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
LR FP +YIY+PW AP VQ+ A CII YP+ +V+H +AS N + +K+
Sbjct: 436 LRGFPAKYIYDPWNAPEVVQKAAKCIIGVHYPKPMVHHAEASRLNIERMKQ 486
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 149/467 (31%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 73 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 132
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 133 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRM 192
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 193 EL---PKKPVVAVTSQQME--SCRAEIQDNHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 244
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 245 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 297
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 298 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 354
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 355 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVR 411
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 412 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 471
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ A CII DYP +VNH + S N + +K+
Sbjct: 472 PSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAETSRLNIERMKQ 518
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 216/470 (45%), Gaps = 118/470 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 58 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 117
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP----RYQPCKTLL 88
D E GV+ G PP R+Q + +
Sbjct: 118 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRM 177
Query: 89 NFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR 148
LP +P + + + + +Q VP E+ +P G +
Sbjct: 178 E------LPKKPVVAVTSQQME--SCRAEIQDNHDDTYGVPSLEEL-GFPTEGLGPAV-- 226
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSV 203
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 227 WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSC 279
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 280 RLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW- 337
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 338 -DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWES 393
Query: 297 --------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPEL 327
LLD + C CPV FGRR DP G YI+RY+P+L
Sbjct: 394 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKL 453
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ FP +YIYEPW AP +Q+ A CII DYP +VNH + S N + +K+
Sbjct: 454 KGFPSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAETSRLNIERMKQ 503
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 215/470 (45%), Gaps = 118/470 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL CL DLD L+ +LF+++G P +F +L +E T+L +E
Sbjct: 41 FAGSSNVGINRWRFLLHCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEY 100
Query: 62 DCE--------GVKPYQS----------------------FPTGSHPPRYQPCKTLLNFR 91
D E ++ S G P Y+ + L+N
Sbjct: 101 DSEPFGKERDAAIQKLASEAAVEVVVRISHTLYDLDRIIELNGGPPPLTYKRFQALINRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDF---GDPLIR 148
D LP +T TM + + + E+ F G P
Sbjct: 161 DAVELPAE--------RITLETMQSCV---TPVSENHDDKFGVLSLEELGFETEGLPTAV 209
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSV 203
W GGETEAL++L L ++ +++N P L PT S L+FGCLS
Sbjct: 210 WPGGETEALLRLERHLERK-------AWVANYERPRMNANSLLATPTGLSPYLRFGCLSC 262
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R FY+ L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NP+C+ IPW
Sbjct: 263 RLFYFKLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTTATNNPCFDKMEGNPVCVQIPW- 320
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------- 296
+ +P L W G+TG+ +IDA+M QLR+
Sbjct: 321 -DRNPEA---LAKWAEGRTGFAWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEE 376
Query: 297 --------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPEL 327
LLD + C CPV FGRR DP+G YI+RY+P L
Sbjct: 377 GVKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVL 436
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
R FP +YIY+PW AP VQ+ A CII YP+ +V+H +AS N + +K+
Sbjct: 437 RGFPAKYIYDPWNAPEEVQKAARCIIGVHYPKPMVHHAEASRINIERMKQ 486
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 148/464 (31%), Positives = 215/464 (46%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N +L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEY 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLN-------------FRDLSGLPPRPKEDIDFRH 108
D E P G R K L N DL + +
Sbjct: 101 DSE--------PFGKE--RDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTY 150
Query: 109 VTFGTMSESLQREVSLFQTV------PKPEQFHKYPEMDFGDPLIR-------------W 149
F T+ ++ V+ +T+ P + FG P + W
Sbjct: 151 KRFQTLISRMEAVVTPAETITAEVMGPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GGETEAL +L L E +++ + + L PT S L+FGCLS R FY+
Sbjct: 211 PGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFK 268
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 269 LTDLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNPE 325
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 326 A---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV+FGRR DP+G YI+RY+P LR FP +
Sbjct: 383 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAK 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIY+PW AP VQ+ A CII YP +V+H +AS N + +K+
Sbjct: 443 YIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEASRLNIERMKQ 486
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 211/464 (45%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E G+ Q G PP Y + ++
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D PP P G+ L+ + VP E+ + P+ W+G
Sbjct: 179 D----PPEPSVST-VTSACIGSAYTPLKEDHDDHYGVPTLEEL-GFDTEGLLPPV--WVG 230
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 231 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 286
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 287 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW-----DK 339
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 340 NVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 399
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 400 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPILKNFPTR 459
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL VQ A CII KDY +VNH ++S N + +K+
Sbjct: 460 YIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 209/465 (44%), Gaps = 109/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 42 FAGSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 101
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G++ + G P Y + ++
Sbjct: 102 DPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASM 161
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR--- 148
D PP+P+ I G + + VP E E+ F +R
Sbjct: 162 DA---PPQPEAAITLD--VIGNANTPQYDDHDDKYGVPTLE------ELGFETEALRPPV 210
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGETEAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 211 WIGGETEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 268
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 269 QLTDLYKKIKKACPP--LSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPW-----D 321
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 322 RNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 381
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP
Sbjct: 382 EELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPT 441
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
++I+EPW A VQ A C+I KDYP +VNH AS N + +K+
Sbjct: 442 RFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIASRANMERIKQ 486
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 209/465 (44%), Gaps = 109/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 137 FAGSSNVGINKWRFLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 196
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G++ + G P Y + ++
Sbjct: 197 DPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASM 256
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR--- 148
D PP+P+ I G + + VP E E+ F +R
Sbjct: 257 DA---PPQPEAAITLD--VIGNANTPQYDDHDDKYGVPTLE------ELGFETEALRPPV 305
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGETEAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 306 WIGGETEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 363
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 364 QLTDLYKKIKKACPP--LSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPW-----D 416
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 417 RNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 476
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP
Sbjct: 477 EELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPT 536
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
++I+EPW A VQ A C+I KDYP +VNH AS N + +K+
Sbjct: 537 RFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIASRANMERIKQ 581
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 214/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T L FE
Sbjct: 55 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTHLTFEY 114
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GVK G PP Y+ + +++
Sbjct: 115 DSEPFGEERDAAIVKLAKEAGVKVTTENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRM 174
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
DL P +P I + + +Q VP E+ + E G W G
Sbjct: 175 DL---PKKPVSTITSQQMEM--CQTKIQENHDETYGVPSLEELGFFTE---GLAPAVWQG 226
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 227 GETEALTRLDKHL--ERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 284
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 285 ELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DRNPEA- 340
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 341 --LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWESGVRVFDEL 398
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP G YI+RY+P+L+ FP +YI
Sbjct: 399 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPQLKGFPSRYI 458
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPW A VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 459 YEPWNASESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 500
>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
Length = 531
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 220/465 (47%), Gaps = 112/465 (24%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 1 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDS 60
Query: 64 E-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDL 93
E GV+ G+ PP Y+ + +++ +L
Sbjct: 61 EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMEL 120
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
P +P I + + T +Q VP E+ +P D P + W GGE
Sbjct: 121 ---PKKPVSSIVSQQME--TCKVDIQENHDDVYGVPSLEELG-FP-TDGLAPAV-WQGGE 172
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYW 208
TEAL +L++ L ++ +++N P L PT S L+FGCLS R FY+
Sbjct: 173 TEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 225
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 226 RLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DKNP 282
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 283 EA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVF 339
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGRR DP G Y+KRY+P+L+ FP
Sbjct: 340 DELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPS 399
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 400 RYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 444
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 216/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRL 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P D G + + VP E+ E G P W G
Sbjct: 161 DPPEMPVETLSD-----TLMGCCVTPVSEDHGEKYGVPSLEELGFDTE---GLPSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEARTGFPWIDAIMSQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G +I+RY+P LR FP ++I
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKFI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ A CII YP+ +V+H +AS N + +K+
Sbjct: 445 YDPWNAPESVQAAAKCIIGVHYPKPMVHHAEASRLNIERMKQ 486
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 221/464 (47%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N +L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEY 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLN-------------------FRDLSG----LPP 98
D E P G R K L N +L+G L
Sbjct: 101 DSE--------PFGKE--RDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTY 150
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVP----KPEQFH--KYPEMDF---GDPLIRW 149
+ + + R T +E++ EV T P E+F E+ F G W
Sbjct: 151 KRFQTLISRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GGETEAL +L L E +++ + + L PT S L+FGCLS R FY+
Sbjct: 211 PGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFK 268
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 269 LTDLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP- 324
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 --EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV+FGRR DP+G YI+RY+P LR FP +
Sbjct: 383 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAK 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIY+PW AP VQ+ A CII YP +V+H +AS N + +K+
Sbjct: 443 YIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEASRLNIERMKQ 486
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 153/464 (32%), Positives = 221/464 (47%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G +R+RFLL+CL DLD L+ +LF+++G P +F +L +E N +L +E
Sbjct: 41 FAGSSNVGISRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEY 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLN-------------------FRDLSG----LPP 98
D E P G R K L N +L+G L
Sbjct: 101 DSE--------PFGKE--RDAAIKKLANEAGVEVIVRISHTLYDLDKIIELNGGQSPLTY 150
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVP----KPEQFH--KYPEMDF---GDPLIRW 149
+ + + R T +E++ EV T P E+F E+ F G W
Sbjct: 151 KRFQTLISRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GGETEAL +L L E +++ + + L PT S L+FGCLS R FY+
Sbjct: 211 PGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFK 268
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 269 LTDLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP- 324
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 --EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV+FGRR DP+G YI+RY+P LR FP +
Sbjct: 383 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAK 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIY+PW AP VQ+ A CII YP +V+H +AS N + +K+
Sbjct: 443 YIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEASRLNIERMKQ 486
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 160/456 (35%), Positives = 220/456 (48%), Gaps = 93/456 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F +G NR+RFL++ L DLD LK G +LFI++GSP F+K+ +E N KL FE
Sbjct: 47 FVKNAKVGPNRWRFLVQSLQDLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEV 106
Query: 62 DCEGVKPYQSF------PTGSHPPRYQPCKTLLNFRDLSGL-----PPRPKEDIDFRHVT 110
D E PY H K DL + P + F+ V
Sbjct: 107 DIE---PYAKTRDEEIKKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVV 163
Query: 111 --FGTMSESLQREVSL---FQTVPKPEQFHK--YPEMD-----FGDPLIRWLGGETEALI 158
FGT ++L L QT+ ++++ EM G L R GGETEAL
Sbjct: 164 AKFGTPEKALNAPGKLPKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELYR--GGETEALA 221
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTI 217
++ + +SQ+ K + SP+ P T+ S LKFGCLS R Y LH+ +
Sbjct: 222 RMEKYMSQQDWVCK---FSKPDTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRLHEIIDGR 278
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
PP+ ++TGQ++WRE++YT A+ P +++M NP+C IPW + P E ++ AW
Sbjct: 279 KHTSPPT--SLTGQMLWREFYYTCGAYTPNFNRMVGNPVCKQIPW--KVDPEDEHFV-AW 333
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
KNG+TGYPFIDA+M QLR LLD +
Sbjct: 334 KNGRTGYPFIDAIMIQLRTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADW 393
Query: 303 CV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
+ PV FG++ D G YIK+Y+P L++FP +YIYEPWKA
Sbjct: 394 ALNAGNWMWLSASAFFHSYFRVYSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKA 453
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
PL VQ+ A CII KDYP+RIV+H EN +KK
Sbjct: 454 PLSVQQTAGCIIGKDYPKRIVDHDVVMKENLAKMKK 489
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 215/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+ L DLD L+ +LF+++G P +F +L +E +L +E
Sbjct: 41 FAGSSNVGINRWRFLLQSLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKIARLSYEY 100
Query: 62 DCE--------GVKPYQS----------------------FPTGSHPPRYQPCKTLLNFR 91
D E +K S G P Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVTVRVSHTLYDLDQIIELNGGQSPLTYKRFQTLISRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P E I G + L + VP E+ E G W G
Sbjct: 161 DPVEMPV---ESITAE--VMGKCTTPLSDDHDEKFGVPSLEELGFDTE---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ +PW + +P
Sbjct: 271 DLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPCFDKMESNPICVQMPW--DRNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPDSVQKAAKCIIGVHYPKPMVNHAEASRINIERMKQ 486
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 226/467 (48%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L +E N T+L FE
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDSSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEY 100
Query: 62 DCEG---------VKPYQSFPT---------------------GSHPPRYQPCKTLLNFR 91
D E +K Q F S P ++ +T+++
Sbjct: 101 DPEPYGKERDGAIIKMAQEFGVETIVRNSHTLYNLDRIIEMNNNSPPLTFKRFQTIVSRL 160
Query: 92 DL--SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDF---GDPL 146
+L LPP ++ +D H G + L ++P E E+ F G P
Sbjct: 161 ELPRRPLPPITQQQMDKCHTKIGDNHDQLY-------SIPSLE------ELGFRTAGLPP 207
Query: 147 IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGE++AL +L++ L +++ + + + + L PT S L+FGCLS R
Sbjct: 208 AVWRGGESQALDRLSKHLDKKV--WVTSLEHPRVNTCSLYASPTGLSPYLRFGCLSCRVL 265
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + + P ++ GQL+WRE+FYT + +NP +D+M+ NPIC+ IPW +
Sbjct: 266 YYNLRELYMKVRKRCSPP-LSLFGQLLWREFFYTAATNNPNFDRMDGNPICVQIPW--DQ 322
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P + L W G+TG+P+IDA+M QLR+
Sbjct: 323 NP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMK 379
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+ Y+P L+ +
Sbjct: 380 VFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPTGDYIRHYIPILKDY 439
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP +Q+ ANC++ DYP+ ++NH ++S N + +K+
Sbjct: 440 PNRYIYEPWNAPESLQKAANCVVGVDYPKPMINHAESSRLNIERMKQ 486
>gi|345326794|ref|XP_001508613.2| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 721
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 210/451 (46%), Gaps = 102/451 (22%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-------- 64
FRFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E
Sbjct: 157 FRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDA 216
Query: 65 GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKE 102
+K S G PP Y+ +TL++ D +P E
Sbjct: 217 AIKKLASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMDPLAMP---VE 273
Query: 103 DIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNE 162
I G L + VP E+ + G P W GGETEAL +L
Sbjct: 274 TITAE--VMGKCMTPLSDDHDEKYGVPSLEELGFDTD---GLPSAVWPGGETEALTRLER 328
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
L E +++ + + L PT S L+FGCLS R FY+ L D + + +
Sbjct: 329 HL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSS 386
Query: 223 PSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQT 282
P ++ GQL+WRE+FYT + NP +D+ME NPIC+ IPW + +P + L W G+T
Sbjct: 387 PP-LSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPW--DRNP---EALAKWAEGRT 440
Query: 283 GYPFIDAVMRQLRR-----------------------------------LLDCTY----- 302
G+P+IDA+M QLR+ LLD +
Sbjct: 441 GFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAG 500
Query: 303 ----------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQ 346
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP G+Q
Sbjct: 501 SWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQ 560
Query: 347 EKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 561 KAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 591
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 220/464 (47%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 34 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 93
Query: 62 DCE--------GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFR 91
D E +K S G PP Y+ +TL++
Sbjct: 94 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 153
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ +P T + + ++ VP E+ E G P W G
Sbjct: 154 EPLEIPVETITAEVMEKCTTPVLDDHDEK-----YGVPSLEELGFDTE---GLPSAVWPG 205
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GETEAL +L L ++ + +F+ +N + TG S L+FGCLS R FY+
Sbjct: 206 GETEALTRLERHLERKAWVANFERPRMNANSLLASTTG----LSPYLRFGCLSCRLFYFK 261
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 262 LTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP- 317
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 318 --EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 375
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGRR DP+G YI+RY+P L+ FP +
Sbjct: 376 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPK 435
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIY+PW AP VQ+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 436 YIYDPWNAPETVQKVAKCIIGVNYPKPMVNHAEASRLNIERMKQ 479
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 211/464 (45%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E G+ Q G PP Y + ++
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D PP P G+ L+ + VP E+ + P+ W+G
Sbjct: 179 D----PPEPSVPT-VTSACIGSAYTPLKEDHDDHYGVPTLEEL-GFDTEGLLPPV--WVG 230
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 231 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 286
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 287 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW-----DK 339
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 340 NVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 399
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 400 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPILKNFPTR 459
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL VQ A CII KDY +VNH ++S N + +K+
Sbjct: 460 YIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 216/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE
Sbjct: 41 FAGSSNVGVNRWRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLAMEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRL 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D +P D G + + VP E+ E G P W G
Sbjct: 161 DPPEMPVEMLTD-----TLMGRCVTPVSEDHGDKYGVPSLEELGFDTE---GLPSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G +I+RY+P LR FP ++I
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPVLRGFPAKFI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ A CII YP+ +V+H +AS N + +K+
Sbjct: 445 YDPWNAPESVQAAAKCIIGVHYPKPMVHHAEASRLNIERMKQ 486
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 220/464 (47%), Gaps = 106/464 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 100
Query: 62 DCE--------GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFR 91
D E +K S G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ +P T + + ++ VP E+ E G P W G
Sbjct: 161 EPLEIPVETITAEVMEKCTTPVLDDHDEK-----YGVPSLEELGFDTE---GLPSAVWPG 212
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GETEAL +L L ++ + +F+ +N + TG S L+FGCLS R FY+
Sbjct: 213 GETEALTRLERHLERKAWVANFERPRMNANSLLASTTG----LSPYLRFGCLSCRLFYFK 268
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 269 LTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRNP- 324
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 --EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGRR DP+G YI+RY+P L+ FP +
Sbjct: 383 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPK 442
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YIY+PW AP VQ+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 443 YIYDPWNAPETVQKVAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 222/469 (47%), Gaps = 116/469 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE- 60
F G ++G NR+RFLLE L DLD L+ +L +V+G P +F +L ++ T+L FE
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEF 100
Query: 61 --------QDCEGVKPYQSFPT-----GSH---------------PP----RYQPCKTLL 88
+D +K Q F SH PP R+Q + L
Sbjct: 101 DPEPYGKERDGAIIKLAQQFGVETIVRNSHTLYNLDRIIEVNNNSPPLTFKRFQTIVSRL 160
Query: 89 NFRDLSGLPPRPKEDIDFR--HVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPL 146
LP RP + H M++S ++ ++P E+ E G P
Sbjct: 161 E------LPRRPLPTVTQHQIHKCGAKMADSQEQ----LYSIPSLEELGFRTE---GLPP 207
Query: 147 IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGE+EAL +L++ L +++ + + + S + L P S L+FGCLS R
Sbjct: 208 AVWRGGESEALERLHKHLDKKV--WVANLEHSRVSTCSLYASPAGLSPYLRFGCLSCRVL 265
Query: 207 YWALHDHFNTIHEG--RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
Y+ L + + + +G PPS F GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 266 YYNLRELYVKLRKGCSPPPSLF---GQLLWREFFYTAATNNPNFDRMEGNPICVQIPW-- 320
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------- 296
+ +P + L W G TG+P+IDA+M QLR+
Sbjct: 321 DQNP---EALAKWAEGHTGFPWIDAIMTQLRQEGWIHHQARRAVACFLTRGDLWISWECG 377
Query: 297 -------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELR 328
LLD + C CPV FGRR DP G YI+RY+P L+
Sbjct: 378 MKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFKCYCPVGFGRRTDPSGDYIRRYIPILK 437
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+P +YIYEPW AP VQ+ ANC++ DYP ++NH + S N + +K+
Sbjct: 438 DYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHAEGSRLNIERMKQ 486
>gi|404313305|gb|AFR54427.1| cryptochrome 2 [Mythimna separata]
Length = 757
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 209/462 (45%), Gaps = 103/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 60 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEE 119
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G+ G P Y + L+
Sbjct: 120 DPEPYGRVRDHNIMSKCREVGITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALI--- 176
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ +PP PK + T + + + VP E+ + P+ W+G
Sbjct: 177 --ASMPPPPKAEAPITAQTLNGATTPVTDDHDDRFGVPTLEEL-GFETEGLKPPV--WVG 231
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE+EAL +L L E +++ + L T S L+FGCLS R FY+ L
Sbjct: 232 GESEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLT 289
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW +
Sbjct: 290 ELYKRVKRVRPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----EKNQ 342
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +GQTGYP+IDA++ QLR
Sbjct: 343 EALAKWASGQTGYPWIDAIIIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDEL 402
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR+ DP+G +I+RY+P L+ P +YI
Sbjct: 403 LLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRRYIPALKNMPTRYI 462
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW AP VQ+ A CII +DYP +V+H +AS N + +K+
Sbjct: 463 HEPWVAPESVQQSARCIIGRDYPMPMVDHAKASQVNIERIKQ 504
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 218/459 (47%), Gaps = 96/459 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G +G N++RFLL+ L DLD +L+ +LF+++G P IF KL ++ + + L FE+
Sbjct: 56 FAGASQVGINKWRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEE 115
Query: 62 DCE--GVKPYQSFPTGSHPPRYQ----PCKTLLNFRDL----SGLPP------------- 98
D E G + + T S + TL N + + SG+PP
Sbjct: 116 DPEPFGKERDSAVCTKSQDAGIEVIIKTSHTLFNLQKILDKNSGVPPLTYKRFQRILARM 175
Query: 99 ----RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGET 154
RP E + VT G++ + + VP E + D + + W GGET
Sbjct: 176 DPPPRPVEAVT--SVTIGSVVTPINSDHDDQYGVPTLEDLGF--DTDNLEAAV-WKGGET 230
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EAL +L+ L E +++ + L PT S L+FGCLS R FYW L D +
Sbjct: 231 EALSRLDRHL--ERKAWVASFEKPKMTPQSLMASPTGLSPYLRFGCLSTRLFYWRLTDLY 288
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ + R +I GQL+WRE+FYT + +NP +D+M NPIC+ +PW + +P + L
Sbjct: 289 RKVKK-RTDMPLSIHGQLLWREFFYTAATNNPKFDRMVGNPICVQVPW--DKNP---EAL 342
Query: 275 NAWKNGQTGYPFIDAVMRQLR-----------------------------------RLLD 299
W +TG+P+IDA+M QLR +LLD
Sbjct: 343 AKWAECKTGFPWIDAIMTQLRQEGWIHHLARHSVACFLTRGDLWISWEEGMKVFEEQLLD 402
Query: 300 CTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ + CP +FGR+ DP G YI++Y+P L+ FP +YIYEP
Sbjct: 403 ADWSINAGMWLWLSCSSFFQQFFHTYCPASFGRKADPTGDYIRKYLPVLKAFPTKYIYEP 462
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
W AP+ +Q C+I DYP IVNH + S N + +K+
Sbjct: 463 WTAPMEIQVAVRCVIGVDYPLPIVNHAEISQINMERMKQ 501
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 223/473 (47%), Gaps = 124/473 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 100
Query: 62 DCE--------GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFR 91
D E +K S G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF--- 142
D +P E++ EV T P + KY E+ F
Sbjct: 161 DPLEIP-----------------VETITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTE 203
Query: 143 GDPLIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGC 200
G P W GGETEAL +L L ++ + +F+ +N + TG S L+FGC
Sbjct: 204 GLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTG----LSPYLRFGC 259
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
LS R FY+ L D + + + P ++ GQL+WRE+FYT + +NP +D+M+ NPIC+ I
Sbjct: 260 LSCRLFYFKLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMDGNPICVQI 318
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------ 296
PW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 319 PW--DRNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIS 373
Query: 297 -----------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYV 324
LLD + C CPV FG+R DP+G YI+RY+
Sbjct: 374 WEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGKRTDPNGDYIRRYL 433
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P L+ FP +YIY+PW AP VQ+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 434 PILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 211/463 (45%), Gaps = 105/463 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD LK +LF+V+G P KL RE T L FE+
Sbjct: 72 FASSSNVGINKWRFLLQCLEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 131
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G+ G P Y + L+
Sbjct: 132 DPEPYGRVRDHNITTKCREVGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALI--- 188
Query: 92 DLSGLPPRPKED-IDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
S PP+P E I + S+ + VP E+ + D P+ W+
Sbjct: 189 -ASMPPPQPAEAPISIETLNGAKTPVSVDHDDRF--GVPTLEEL-GFETEDLKPPM--WM 242
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE+EAL +L+ L E +++ + L T S L+FGCLS R FY+ L
Sbjct: 243 GGESEALARLDRHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQL 300
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ + I RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW
Sbjct: 301 TELYKKIKRVRPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----EKN 353
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------------- 296
++ L+ W NGQTGYP+IDA+M QLR
Sbjct: 354 QEALSKWANGQTGYPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDE 413
Query: 297 ---------------LLDCT-------YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
L C+ +C CPV FGR+ DP+G +I++Y+P L+ P +Y
Sbjct: 414 LMLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRY 473
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
I+EPW AP VQ+ A C++ DYP +++H +AS N + +K+
Sbjct: 474 IHEPWVAPESVQQAAQCVVGCDYPLPMLDHTKASQINLERIKQ 516
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 212/462 (45%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL CL DLD L+ +L++++G P +F +L +E +L +E
Sbjct: 41 FAGSSNVGINRWRFLLHCLEDLDNSLRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEY 100
Query: 62 DCEGVKPYQSFP-----------------------------TGSHPP-RYQPCKTLLNFR 91
D E + HPP Y+ + L+N
Sbjct: 101 DSEPFGKERDAAIQKLACEAEVEVMVQVSHTLYNLVKIIELNDGHPPLTYKRFQALINRM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D LP E I + S + VP E+ E G W G
Sbjct: 161 DAVELP---AETITLEVIRNCATPISEDHDDKF--GVPSLEELGFETE---GLTTAIWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL++L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALMRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFRLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +N +D+ME NP+C+ IPW + +P
Sbjct: 271 DLYRKVKKNNSPP-LSLYGQLLWREFFYTTATNNSCFDKMEGNPVCVQIPW--DRNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W GQTG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 --------------LLDCT-------YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
L C+ +C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LIDVDWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEEVQKAAKCIIGVHYPKPMVNHAEASRVNIERMKQ 486
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 212/465 (45%), Gaps = 109/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++ N++RFLL+CL DLDR L +LF+++G P KL RE T L FE+
Sbjct: 101 FAGSANVSINKWRFLLQCLEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEE 160
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E G+ Q G PP Y + ++
Sbjct: 161 DPEPYGRVRDENITTLCKELGITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARM 220
Query: 92 DLSGLPPR-PKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
D PP P + G+ L+ + F VP E+ + P+ W+
Sbjct: 221 D----PPEYPAAAVT--AACIGSAYTPLKDDHDDFFGVPTLEEL-GFDTEGLMAPV--WV 271
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGETEAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 272 GGETEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYY 327
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + I + PP ++ GQL+WRE+FY + +NP +D+M NPIC+ IPW
Sbjct: 328 QLADLYKKIKKTIPP--LSLHGQLLWREFFYCAATNNPNFDRMHGNPICVQIPW-----D 380
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
L+ W NGQTG+P+IDA+M QLR
Sbjct: 381 KNVVALSKWANGQTGFPWIDAIMTQLREEGWIHQLARHAVACFLTRGDLWISWEEGMKVF 440
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP
Sbjct: 441 DELLLDADWSINAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPT 500
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW APL VQ A CII ++Y +VNH ++S N + +K+
Sbjct: 501 RYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKSSRINVERMKR 545
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 223/476 (46%), Gaps = 117/476 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G N++RFLL+CL+DLD LK +LF+++G P KL R+ T FE+
Sbjct: 42 FAGASNVGINKWRFLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEE 101
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDI----DFRHVTFGTMSES 117
D E P G R Q K + + +S + R + +V G +
Sbjct: 102 DPE--------PFGR--VRDQNIKVMCSELGISVIT-RCSHTLYQLDKIINVNGGKAPLT 150
Query: 118 LQREVSLFQTVPKPEQFHKYPEMD------------------FGDPLIR----------- 148
++ + + PE+ P +D FG P +
Sbjct: 151 YHLFQNILECIDPPER--AVPSIDKEFLGNAFTPTKYDHDKIFGVPTVEELGFEEINNIA 208
Query: 149 ---WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR 205
W+GGETEALI+L L E ++F + L PT + LKFGCLS R
Sbjct: 209 RHVWVGGETEALIRLQCHL--ERKAFIASFGKPKMTPQSLLASPTGLAPYLKFGCLSTRL 266
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
++ L++ + I + +PP ++ GQL+WR++FY S +NP +D+M NPIC+ IPW +
Sbjct: 267 YFSELNELYKKIRKSQPP--LSLHGQLLWRDFFYCASTNNPNFDRMVGNPICVQIPW--D 322
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------------------------- 296
+P + L+ W NGQTGYP+IDA+M QLR+
Sbjct: 323 KNP---RALSKWANGQTGYPWIDAIMIQLRQEGWIHCIARHAVACFLTWGDLWLSWEEGM 379
Query: 297 ------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQ 329
LLD + C CPV FGR++DP+G YI+RY+P L
Sbjct: 380 KVFDELLLDADWSVNAGYWMWYSCSSFYKEFIHCYCPVRFGRKVDPNGDYIRRYIPALNN 439
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK---KEKANC 382
P +YI+EPW AP +Q ANCII DYP IVNH+ AS N + +K ++ +NC
Sbjct: 440 MPNKYIHEPWLAPESIQITANCIIGIDYPLPIVNHINASKINIERMKLAYQQLSNC 495
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 223/473 (47%), Gaps = 124/473 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEY 100
Query: 62 DCE--------GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFR 91
D E +K S G PP Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF--- 142
D +P E++ EV T P + KY E+ F
Sbjct: 161 DPLEIP-----------------VETITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTE 203
Query: 143 GDPLIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGC 200
G P W GGETEAL +L L ++ + +F+ +N + TG S L+FGC
Sbjct: 204 GLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTG----LSPYLRFGC 259
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
LS R FY+ L D + + + P ++ GQL+WRE+FYT + +NP +D+M+ NPIC+ I
Sbjct: 260 LSCRLFYFKLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPCFDKMDGNPICVQI 318
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------ 296
PW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 319 PW--DRNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIS 373
Query: 297 -----------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYV 324
LLD + C CPV FG+R DP+G YI+RY+
Sbjct: 374 WEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGKRTDPNGDYIRRYL 433
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P L+ FP +YIY+PW AP VQ+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 434 PILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
Length = 393
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 179/324 (55%), Gaps = 47/324 (14%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNRFRFLLECL DLD+ LK+ G +L+ QG P I ++L E TK+ FE D
Sbjct: 32 GTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADP 91
Query: 64 EGV----------------------------KPYQSFPT-GSHPPRYQPCKTLLNFRDLS 94
E + PY+ G PP L+
Sbjct: 92 EPIWQERDRLVRELLDKKNVQCVEKVSHTLWDPYEIIENNGGSPPLTFSLFNLVT--STI 149
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDP-LIRWLGGE 153
G PPRP ED DF ++ +S++ ++ +P E + PE + + L+ WLGGE
Sbjct: 150 GPPPRPVEDPDFTDISL-PVSQNHDKQFG----IPSLEDLNVRPECEEQNKRLVEWLGGE 204
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
++AL L R+ E +++++G + NQ PDL PP S SA L+FGCLSVR+FYW++HD
Sbjct: 205 SKALELLAIRMKHEEKAYENGYVMPNQYHPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDK 264
Query: 214 FNTI--HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
F + G P S ++ QL+WREYFYTM+ +N YD+ME NPICLNIPW +P E
Sbjct: 265 FEEVKPSMGAPVS---LSAQLMWREYFYTMAINNINYDKMETNPICLNIPWY--DNPEHE 319
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR 295
+ W G+TGYP+IDA+M+QLR
Sbjct: 320 E---KWTQGETGYPWIDAIMKQLR 340
>gi|302745154|gb|ADL62680.1| criptochrome 1b, partial [Phreatichthys andruzzii]
Length = 564
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 218/459 (47%), Gaps = 102/459 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E T+L +E D E
Sbjct: 1 SSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSE 60
Query: 65 -----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFRDLS 94
GV+ + G P Y+ +TL++ D
Sbjct: 61 PFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMDPV 120
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGET 154
+P E I G + + + VP E+ E D G W GGET
Sbjct: 121 EIP---AETITAE--VMGKCATPVSDDHDDKFGVPSLEELGF--ETD-GLSSAVWPGGET 172
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EAL +L L E +++ + + L PT S L+FGCLS R FY+ L D +
Sbjct: 173 EALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLY 230
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ + P ++ GQL+WRE+FYT + +NP++D+ME NPIC+ IPW + +P + L
Sbjct: 231 RKVKKNSLPP-LSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPW--DRNP---EAL 284
Query: 275 NAWKNGQTGYPFIDAVMRQLRR-----------------------------------LLD 299
W G+TG+P+IDA+M QLR+ LLD
Sbjct: 285 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 344
Query: 300 CTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ C CPV FGRR DP+G YI+RY+P LR FP ++IY+P
Sbjct: 345 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDP 404
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
W AP VQ+ A CII YP+ +VNH +AS N + +K+
Sbjct: 405 WNAPESVQKVAKCIIGVHYPKPMVNHAEASRINIERMKQ 443
>gi|395538375|ref|XP_003771158.1| PREDICTED: cryptochrome-1 [Sarcophilus harrisii]
Length = 671
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 141/426 (33%), Positives = 200/426 (46%), Gaps = 102/426 (23%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFP 73
RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E
Sbjct: 159 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSE--------- 209
Query: 74 TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE- 132
P + D + + E + R + KPE
Sbjct: 210 -----------------------PFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKPEA 246
Query: 133 --QFHKYPEMDF---GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
Q + E F G P W GGETEAL +L L E +++ + + L
Sbjct: 247 GLQKLVWDEEGFDTDGLPSAVWPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLA 304
Query: 188 PPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
PT S L+FGCLS R FY+ L D + + + P ++ GQL+WRE+FYT + +NP
Sbjct: 305 SPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPR 363
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------- 296
+D+ME NPIC+ IPW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 364 FDKMEGNPICVQIPW--DRNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHA 418
Query: 297 ------------------------LLDCTY---------------------CVCPVNFGR 311
LLD + C CPV FGR
Sbjct: 419 VACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGR 478
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
R DP+G YI+RY+P LR FP +YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N
Sbjct: 479 RTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLN 538
Query: 372 KQYLKK 377
+ +K+
Sbjct: 539 IERMKQ 544
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 147/464 (31%), Positives = 212/464 (45%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 61 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 120
Query: 62 D---------------CE--GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D CE G+ Q +G P Y + ++
Sbjct: 121 DPEPFGRVRDHNISALCEELGISVVQRISHTLYKLDEIIERNSGKPPLTYHQFQNVV--- 177
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+G+ P G+ L+ + VP E+ + P+ W+G
Sbjct: 178 --AGMGPPESPVPTVTAACIGSAYTPLKDDHDDHYGVPTLEEL-GFDTESLLPPV--WVG 232
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 233 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 288
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 289 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW-----DK 341
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 342 NVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 401
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 402 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTR 461
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL VQ A CII K+Y +VNH ++S N + +K+
Sbjct: 462 YIHEPWNAPLSVQHAAKCIIGKEYSLPMVNHSKSSRINIERMKQ 505
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 209/464 (45%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +IG N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 59 FAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E G+ Q G PP Y +T++
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D G+ L+ + VP E+ + P+ W+G
Sbjct: 179 DPP-----EPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEEL-GFDTEGLLPPV--WVG 230
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 231 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 286
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 287 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW-----DK 339
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 340 NVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 399
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 400 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTR 459
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL VQ A CII KDY +VNH ++S N + +K+
Sbjct: 460 YIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 222/462 (48%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +L++++G P +F +L +E + L FE+
Sbjct: 43 FAGSSNVGVNRWRFLLQCLEDLDASLRKLNSRLYVIRGQPTDVFPRLFKEWKVSCLSFEE 102
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GVK G PP Y+ + +L+
Sbjct: 103 DSEPFGRERDMAVMKLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKM 162
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D P +P + I T ++ ++ + VP E+ + D +P++ W G
Sbjct: 163 DP---PDQPVDSIT--ASTVDNLTTPIRDDHDEKFGVPSLEELGF--DTDNLNPVV-WPG 214
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY L
Sbjct: 215 GETEALTRLERHL--ERKAWVASFERPKMTASSLLASPTGLSPYLRFGCLSPRLFYKKLT 272
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + P ++ GQL+WRE+FYT + +NP +D+M N IC+ IPW + +P
Sbjct: 273 ELYKKVKRSNHPP-LSLYGQLLWREFFYTAATNNPNFDKMVNNTICVQIPW--DKNP--- 326
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W GQTG+P+IDA+M QL++
Sbjct: 327 EALAKWAEGQTGFPWIDAIMAQLQQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 386
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + V CPVNFGRR DP+G +I++Y+P+LR FP +YI
Sbjct: 387 LLDADWSVNAGSWMWLSCSSFFQQFFHVYCPVNFGRRTDPNGDFIRKYLPKLRGFPAKYI 446
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW +P VQ+ A CII KDYP +VNH + S N + +K+
Sbjct: 447 YDPWNSPESVQKAAKCIIGKDYPLPMVNHAETSRINVERMKQ 488
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 147/464 (31%), Positives = 211/464 (45%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 61 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEE 120
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G+ Q +G P Y + ++
Sbjct: 121 DPEPFGRVRDHNISALCKELGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGM 180
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D PP P G+ L+ + VP E+ + P+ W+G
Sbjct: 181 D----PPEPPAPT-VTAACIGSAYTPLKDDHDDHYGVPTLEEL-GFDTESLLPPV--WVG 232
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 233 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 288
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 289 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATKNPNFDKMQGNPICVQIPW-----DK 341
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 342 NVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 401
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 402 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTR 461
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL +Q A CII K+Y +VNH ++S N + +K+
Sbjct: 462 YIHEPWNAPLSIQHAAKCIIGKEYSLPMVNHNKSSRINIERMKQ 505
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 148/482 (30%), Positives = 211/482 (43%), Gaps = 103/482 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD+ LK +LF+V+G P KL RE T L FE+
Sbjct: 71 FASSSNVGINKWRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 130
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G+ G P Y + L+
Sbjct: 131 DPEPYGRVRDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALI--- 187
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ +PP P ++ + + VP E+ E + P I W+G
Sbjct: 188 --ASMPPPPPAEVTITPQMLNGATTPITDNHDDRFGVPTLEELGF--ETEGLKPPI-WIG 242
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE+EAL +L L E +++ + L T S L+FGCLS R FY+ L
Sbjct: 243 GESEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLT 300
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW +
Sbjct: 301 ELYKRVKRVRPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----EKNQ 353
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
L W NGQTGYP+IDA+M QLR
Sbjct: 354 DALAKWANGQTGYPWIDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDEL 413
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR+ DP+G +I++Y+P L+ P +YI
Sbjct: 414 LLDADWSVNAGMWMWFSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYI 473
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNH 395
+EPW AP VQ A C I +DYP +V+H +AS N + +K+ A K N
Sbjct: 474 HEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYKPQATLNANA 533
Query: 396 VQ 397
VQ
Sbjct: 534 VQ 535
>gi|449276417|gb|EMC84949.1| Cryptochrome-1, partial [Columba livia]
Length = 570
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 211/444 (47%), Gaps = 90/444 (20%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--------G 65
RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E D E
Sbjct: 3 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAA 62
Query: 66 VKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDFRHVTFGTMSESL 118
+K S R TL + + G PP + + + R E++
Sbjct: 63 IKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRYQTLISRMEPLEMPVETI 120
Query: 119 QREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEALIKLNERLSQEIE 169
EV T P + KY E+ F G P W GGETEAL +L L E +
Sbjct: 121 TPEVMEKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHL--ERK 178
Query: 170 SFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT 229
++ + + L PT S L+FGCLS R FY+ L D + + + P ++
Sbjct: 179 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPP-LSLY 237
Query: 230 GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA
Sbjct: 238 GQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNPEA---LAKWAEGRTGFPWIDA 292
Query: 290 VMRQLRR-----------------------------------LLDCTY------------ 302
+M QLR+ LLD +
Sbjct: 293 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADWSVNAGSWMWLSC 352
Query: 303 ---------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP +Q+ A CII
Sbjct: 353 SSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCII 412
Query: 354 SKDYPERIVNHVQASLENKQYLKK 377
+YP+ +VNH +AS N + +K+
Sbjct: 413 GVNYPKPMVNHAEASRLNIERMKQ 436
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 213/465 (45%), Gaps = 109/465 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 92 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 151
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPPRYQPCKTLLNFRD 92
D E G+ Q G PP T F++
Sbjct: 152 DPEPFGRVRDHNISALCKELGISVVQRVSHTLYKLDEIIEKNGGKPPL-----TYHQFQN 206
Query: 93 L--SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ S PP P + G+ L+ + VP E+ + P+ W+
Sbjct: 207 VVASMEPPEPPV-LTVTSACIGSAYTPLKDDHDDHYGVPTLEEL-GFDTEGLLPPV--WV 262
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 263 GGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYY 318
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 319 QLTDLYKKIKKAMPP--LSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW-----D 371
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 372 KNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 431
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP
Sbjct: 432 DELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPT 491
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW APL +Q A CI+ K+Y +VNH ++S N + +K+
Sbjct: 492 RYIHEPWNAPLSIQHAAKCIVGKEYSLPMVNHSKSSRINIERMKQ 536
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/480 (32%), Positives = 214/480 (44%), Gaps = 134/480 (27%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F +L + T+L FE
Sbjct: 41 FPKNMQVSINRWRFLIESLKDLDESLKKLNSRLFVVRGRPAEVFPELFTKWKVTRLAFEV 100
Query: 62 DCE----------------GVKPYQSFP-------------TGSHPPRYQPCKTLL---- 88
D E GV+ Q +G P Y +TL+
Sbjct: 101 DTEPYARRDAEVVRLAAEHGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLG 160
Query: 89 ---------NFRDLSGLPPRPKEDIDFRHVTFGTMS-ESLQREVSLFQTVPKPEQFHKYP 138
D+ KED D +GT S E L ++ PK H YP
Sbjct: 161 PPKQPVPAPKLEDMKDCCTPVKEDHDLE---YGTPSYEELGQD-------PKTAGPHLYP 210
Query: 139 EMDFGDPLIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
GGETEAL +L+ + + + +FK N ++P T S +
Sbjct: 211 ------------GGETEALARLDLHMKRTSWVCNFKKPETHPNSLTPSTT----VLSPYV 254
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI 256
KFGCLSVR F+W L + + PP ++ GQL+WRE+FYT A P +D+ME NP+
Sbjct: 255 KFGCLSVRMFWWKLAEVYQGRKHSDPP--VSLHGQLLWREFFYTAGAGIPNFDRMENNPV 312
Query: 257 CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------- 296
C+ + W N ++YL AW+ GQTGYPFIDA+M QLR
Sbjct: 313 CVQVDW-----DNNQEYLRAWREGQTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGD 367
Query: 297 ---------------LLDCTYCV---------------------CPVNFGRRLDPDGIYI 320
LLD + + PV FG++ D +G YI
Sbjct: 368 LWISWEEGQKVFEELLLDADWSLNAANWQWLSASAFFHQFFRVYSPVTFGKKTDKNGEYI 427
Query: 321 KRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
K+Y+P LR+F YIYEPWKAP +QE+A CII +DYP+ IV H + N + +K A
Sbjct: 428 KKYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYPKPIVEHEKVYKRNLERMKAAYA 487
>gi|449482006|ref|XP_002196554.2| PREDICTED: cryptochrome-1 [Taeniopygia guttata]
Length = 715
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 215/452 (47%), Gaps = 90/452 (19%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
+++ N RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E D E
Sbjct: 140 INVLLNSCRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEP 199
Query: 65 -------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDFRHVT 110
+K S R TL + + G PP + + + R
Sbjct: 200 FGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLISRMEP 257
Query: 111 FGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEALIKLN 161
E++ EV T P + KY E+ F G P W GGETEAL +L
Sbjct: 258 LEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLE 317
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
L E +++ + + L PT S L+FGCLS R FY+ L D + + +
Sbjct: 318 RHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNS 375
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W G+
Sbjct: 376 SPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKWAEGR 429
Query: 282 TGYPFIDAVMRQLRR-----------------------------------LLDCTY---- 302
TG+P+IDA+M QLR+ LLD +
Sbjct: 430 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNA 489
Query: 303 -----------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP +
Sbjct: 490 GSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESI 549
Query: 346 QEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 550 QKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 581
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 207/462 (44%), Gaps = 103/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD+ L+ +LF+V+G P KL RE T L FE+
Sbjct: 67 FASSSNVGINKWRFLLQCLEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 126
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G++ G P Y + L+
Sbjct: 127 DPEPYGRVRDHNIMTKCREVGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALI--- 183
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ +PP P + T + VP E+ + P+ W+G
Sbjct: 184 --ASMPPPPSAEPTISLETLNRAVTPISDNHDERFGVPTLEEL-GFDTEGLKPPI--WIG 238
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE EAL++L L E +++ + L T S L+FGCLS R FY+ L
Sbjct: 239 GENEALLRLERHL--ERKAWVASFGRPKMTPESLLSSQTGLSPYLRFGCLSTRLFYYQLS 296
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + I + RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW +
Sbjct: 297 ELYKRIKQERPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----EKNQ 349
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 350 EALKKWANGQTGFPWIDAIMIQLRNDGWIHHLARHAVACFLTRGDLWISWEEGMKVFDEL 409
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR+ DP+G +I++Y+P L+ P +YI
Sbjct: 410 LLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPVLKNMPTRYI 469
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW P +Q+ CII KDYP IV+H +AS N + +K+
Sbjct: 470 HEPWVCPEEIQKSIRCIIGKDYPMPIVDHTKASEINLERIKQ 511
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 209/466 (44%), Gaps = 111/466 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD+ L+ +LF+++G P L ++ N T L FE+
Sbjct: 50 FAGSSNVGINKWRFLLQCLEDLDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEE 109
Query: 62 DCEGVKPYQSFP------------------------------TGSHPPRYQPCKTLLNFR 91
D E + G P Y + ++
Sbjct: 110 DPEPFSKVRDNNITEMCKELNIEVISAVSHTLYKLEKIIEKNNGKAPLTYHQFQAII--- 166
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR--- 148
+ + P P + G + + VP E E+ F ++
Sbjct: 167 --ASMEPPPPAEATIAEDIIGNTRTPIDDDHDDRYGVPTLE------ELGFDTEGLKPPI 218
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQSAALKFGCLSVRRFY 207
W+GGETEAL +L L ++ G ++SP L T S L+FGCLS R FY
Sbjct: 219 WIGGETEALARLERHLERKAWVASFG---RPKMSPQSLLASQTGLSPYLRFGCLSTRLFY 275
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ L D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW + +
Sbjct: 276 YQLTDLYKKIKKTCPP--LSLHGQLLWREFFYCCATKNPNFDKMSGNPICVQIPW--DKN 331
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P + L W NGQTGYP+IDA+M QLR
Sbjct: 332 P---EALAKWANGQTGYPWIDAIMSQLREEGWIHHLARHAVACFLTRGNLWISWEEGMKV 388
Query: 297 ----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV FGR+ DP+G YI++Y+P L+ FP
Sbjct: 389 FEELLLDADWSVNAGMWLWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRKYIPALKNFP 448
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW A +Q A CII KDYP ++NHV AS N +K+
Sbjct: 449 TKYIHEPWVASEAIQRTAKCIIGKDYPLPMINHVIASRNNMGRMKQ 494
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/462 (31%), Positives = 200/462 (43%), Gaps = 123/462 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 86 FAGSSNVGINKWRFLLQCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 145
Query: 62 DCEGVKPYQSFP------------------------------TGSHPPRYQPCKTLLNFR 91
D E + G P Y + ++
Sbjct: 146 DPEPFGKVRDHNISEMCKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASM 205
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D PP+P+ I + + + VP E+ + P+ W+G
Sbjct: 206 DA---PPQPEPAITLAAIGRAVTPQCDDHDDKY--GVPTLEEL-GFETEGLKPPI--WVG 257
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L G T S L+FGCLS R FY+ L
Sbjct: 258 GETEALARLERHL----------------------GTQTGLSPYLRFGCLSTRLFYYQLT 295
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + I + PP ++ GQL WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 296 DLYKKIKKAYPP--LSLHGQLFWREFFYCAATKNPNFDKMAGNPICVQIPW-----DRNA 348
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 349 EALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 408
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +YI
Sbjct: 409 LLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYI 468
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW AP VQ A CII K+YP +VNH AS N + +K+
Sbjct: 469 HEPWNAPESVQRAARCIIGKNYPLPMVNHAIASRANMERIKQ 510
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 215/461 (46%), Gaps = 115/461 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
IG N +RFLL+ L D+D L+ +LF+V+G P +F +L RE + L FE+D E
Sbjct: 71 IGLNLWRFLLQSLEDVDDSLRKLNSRLFVVRGQPADVFPRLFREWKTSFLTFEEDSEPFG 130
Query: 65 ----------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTM 114
+ G Y P L + SG P + F +
Sbjct: 131 REKDAAIRLLAQESGVEVAVGRSHTLYDP---QLIIKHNSGTAP-------LTYKKFLAI 180
Query: 115 SESLQR--------EVSLFQTVPKPEQFHKYPEMDFGDPLIR-------------WLGGE 153
SL +V L P + E FG P ++ W GGE
Sbjct: 181 VRSLGNPQHPCATLDVHLLGGCSTP--VSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGE 238
Query: 154 TEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
TEALI+L+ L ++ I SF+ N + P PT S L+FGCLS R FY L
Sbjct: 239 TEALIRLDRHLERKAWIASFEKPKVTPNSLFPS----PTGLSPYLRFGCLSPRLFYHRLS 294
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + PP ++ GQL+WRE+F+T++A+NP +DQM++NP+CL IPW ++P
Sbjct: 295 ELYRKVKCKDPP--ISLYGQLLWREFFFTVAANNPNFDQMDENPVCLQIPW--TANP--- 347
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL-----------------------------------RR 296
++L W+ GQTG+P+IDA+M QL R
Sbjct: 348 EWLKKWEQGQTGFPWIDAIMIQLKQEGXIHHLARHAVGCFLTRGDLWISWEEGMKVFERW 407
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C+CPV FGR+LDP+G Y+++Y+P L+ FP +YI
Sbjct: 408 LLDAEWSLNAGNWMWLSCSAFFQQFFNCICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYI 467
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
+ PW AP VQ A CII KDYP IV+H + S N + ++
Sbjct: 468 HAPWTAPENVQRAARCIIGKDYPRPIVDHHKVSTANLEKMR 508
>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
Length = 611
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 213/453 (47%), Gaps = 90/453 (19%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
T I + RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E D E
Sbjct: 34 TFFIMFALERFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSE 93
Query: 65 --------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDFRHV 109
+K S R TL + + G PP + + + R
Sbjct: 94 PFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLISRME 151
Query: 110 TFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEALIKL 160
E++ EV T P + KY E+ F G P W GGETEAL +L
Sbjct: 152 PLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRL 211
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
L E +++ + + L PT S L+FGCLS R FY+ L D + + +
Sbjct: 212 ERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKN 269
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W G
Sbjct: 270 SSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNPEA---LAKWAEG 323
Query: 281 QTGYPFIDAVMRQLRR-----------------------------------LLDCTY--- 302
+TG+P+IDA+M QLR+ LLD +
Sbjct: 324 RTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVN 383
Query: 303 ------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP
Sbjct: 384 AGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPES 443
Query: 345 VQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
VQ+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 444 VQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQ 476
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 146/464 (31%), Positives = 214/464 (46%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ G+LF+V+G P + +L + T L FE+
Sbjct: 45 FAGSSNVGINKWRFLLQCLEDLDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEK 104
Query: 62 DCE------------------------------GVKPYQSFPTGSHPPRYQPCKTLLNFR 91
D E ++ S G P Y KT N
Sbjct: 105 DPEPFGKVRDANITHIAREMGIQVIIKTSHTLYKLEKIISKNGGKLPLTY---KTFQNVL 161
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
PP P + R V G + + VP E+ E + P I W G
Sbjct: 162 STMEPPPLPASPVTVRDV--GDAFTPIDEDHDEKYGVPTLEELGF--ETENLAPSI-WKG 216
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS RRF+
Sbjct: 217 GESEALARLEHHLERKAWVASFGRPKMTPQSLYPSRTG----LSPYLRFGCLSARRFFAE 272
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L+D + I + P+ ++ GQL+WRE++YT + +NP +D ME NPIC+ IPW
Sbjct: 273 LNDLYRKIK--KSPAPLSLHGQLLWREFYYTAATNNPKFDHMEGNPICVQIPW-----DK 325
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W +G+TG+P+IDA+M QLR+
Sbjct: 326 NAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVARHAVACFLTRGDLWVSWEEGMKVFD 385
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV +GR+ DP+G YI+ Y+P L+ FP +
Sbjct: 386 ELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVRYGRKADPNGDYIRTYLPVLKNFPTK 445
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW AP VQ+++ C+I +DYP +V+HV+ S N +K+
Sbjct: 446 YIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQSQANLMRMKQ 489
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/460 (32%), Positives = 217/460 (47%), Gaps = 116/460 (25%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---------EQ 61
NR+RFLL+ L DLD L+ G +LF+ +G P +F +L +E T+L F E+
Sbjct: 55 NRWRFLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQYYSEPFGKER 114
Query: 62 DCEGVKPYQSFPT--------------------GSHPP----RYQPCKTLLNFRDLSGLP 97
D +K + G+ PP R+Q + + LP
Sbjct: 115 DAAIMKLAKEAGVEVIVESSHTLYDLDKIIELNGNSPPLTYKRFQAIVSRME------LP 168
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLIRWLGGE 153
RP I + + E + E+ VP E+ +P + G + W GGE
Sbjct: 169 RRPVPSITRQQM------EKCRAEIKSTHDDTYGVPSLEEL-GFPRDNPGAAV--WPGGE 219
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
TEAL +L+ L E +++ + + L PT S L+FGCLS R FY+ L +
Sbjct: 220 TEALARLDRHL--ERKAWVAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLREL 277
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ + + PP ++ GQL+WRE+FYT + +NP +DQME NPIC+ IPW + +P
Sbjct: 278 YQKVKKNSPPP-LSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPW--DKNPEA--- 331
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L W G+TG+P+IDA+M QLR+ LL
Sbjct: 332 LAKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLL 391
Query: 299 DCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + C CPV FGRR DP G Y++RY+P L+ +P +YIYE
Sbjct: 392 DADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYE 451
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
PW AP VQ++A CI+ DYP+ +VNH +AS N + +K+
Sbjct: 452 PWNAPESVQKEAKCIVGVDYPKPVVNHAEASRLNIERMKQ 491
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 210/466 (45%), Gaps = 111/466 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 49 FAGSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEE 108
Query: 62 DCEGVKPYQSF-----------------------------PTGSHPP-RYQPCKTLLNFR 91
D E + G +PP Y +T++
Sbjct: 109 DPEPFGRVRDLNIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIAN- 167
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLI 147
G PP P+E + + E Q +S VP E+ E D P +
Sbjct: 168 --IGPPPEPEETVT------ANLLEGSQTPLSDDHDNKYGVPTLEELGF--ETDKLKPTV 217
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
W GGE+EAL +L L E +++ + L T S L+FGCLS R FY
Sbjct: 218 -WSGGESEALARLERHL--ERKAWVASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFY 274
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ L + + I + PP ++ GQL+WRE+FY + NP +D+M +NPIC+ IPW
Sbjct: 275 YQLVELYKKIKKAMPP--LSLHGQLLWREFFYCAATKNPNFDKMNENPICVQIPW----- 327
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 328 DENAQALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKV 387
Query: 297 ----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV FGR+ DP+G YI++Y+P L+ FP
Sbjct: 388 FDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRKYLPILKNFP 447
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW AP Q A CII KD+P +VNH S N + +K+
Sbjct: 448 TKYIHEPWLAPETEQRAAKCIIGKDFPLPMVNHSIVSKINIERMKQ 493
>gi|432090377|gb|ELK23803.1| Cryptochrome-2 [Myotis davidii]
Length = 539
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 211/454 (46%), Gaps = 112/454 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE---------- 64
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E
Sbjct: 19 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 78
Query: 65 -------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKEDI 104
GV+ G PP Y+ + +++ +L P +P +
Sbjct: 79 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMEL---PKKPVASV 135
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERL 164
RH +E +Q VP E+ +P G + W GGETEAL +L++ L
Sbjct: 136 T-RHQMESCPAE-IQENHDETYGVPTLEEL-GFPTEGLGPAV--WQGGETEALARLDKHL 190
Query: 165 SQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
++ +++N P L PT S L+FGCLS R FY+ L D + +
Sbjct: 191 ERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKR 243
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W
Sbjct: 244 NSSPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DHNPEA---LAKWAE 297
Query: 280 GQTGYPFIDAVMRQLRR-----------------------------------LLDCTY-- 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 298 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 357
Query: 303 -------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
C CPV FGRR DP G YI+RY+P+L+ FP +YIYEPW AP
Sbjct: 358 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 417
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+Q+ A CII DYP IVNH + S N + +K+
Sbjct: 418 SIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 451
>gi|444707572|gb|ELW48837.1| Cryptochrome-2 [Tupaia chinensis]
Length = 577
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 211/457 (46%), Gaps = 112/457 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE------- 64
+ FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E
Sbjct: 54 KLGFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 113
Query: 65 ----------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPK 101
GV+ G PP Y+ + +++ +L P +P
Sbjct: 114 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMEL---PRKPV 170
Query: 102 EDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLN 161
+ + + + +Q VP E+ +P G + W GGETEAL +L+
Sbjct: 171 GSVTSQQME--SCRAEIQENHDETYGVPSLEELG-FPTEGLGPAV--WQGGETEALARLD 225
Query: 162 ERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
+ L ++ +++N P L PT S L+FGCLS R FY+ L D +
Sbjct: 226 KHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 278
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L
Sbjct: 279 VKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRNPEA---LAK 332
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W G+TG+P+IDA+M QLR+ LLD
Sbjct: 333 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDAD 392
Query: 302 Y---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ C CPV FGRR DP G YI+RY+P+L+ FP +YIYEPW
Sbjct: 393 FSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWN 452
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
AP VQ+ A C+I DYP IVNH + S N + +K+
Sbjct: 453 APESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMKQ 489
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 213/461 (46%), Gaps = 118/461 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F ++G NR+RFLL+ L +LD LK +L+I++G P +F KL + + L FE+
Sbjct: 41 FANNANVGVNRWRFLLQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEE 100
Query: 62 DCEGVKPYQ---------------------------------SFPTGSHPPRYQPCKTLL 88
D E PY S G P YQ +T+L
Sbjct: 101 DIE---PYALTRDSEIKKLADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLTYQRLQTVL 157
Query: 89 NFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR 148
+ G PP+P + T +ES + VP E K E + G PL+
Sbjct: 158 SSL---GSPPKPVDSPS----ECKTKTESDHDKK---YGVPSLEDLGK-SEKECG-PLL- 204
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
+ GGETEAL +L + ++ + +F+ N + P T S LKFGCLS R F
Sbjct: 205 FPGGETEALRRLESMMGKKNWVCTFEKPKTAPNSLEPSTT----VLSPYLKFGCLSPRMF 260
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + +N PP ++ GQL+WRE++Y ++ P +D+ME NP+C IPW
Sbjct: 261 YYKLQEVYNKAKHTSPP--VSLLGQLLWREFYYCVAVDTPNFDKMEGNPVCKQIPW---- 314
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
E YL AWK G+TGYPFIDAVM QLR+
Sbjct: 315 -DTNESYLKAWKEGRTGYPFIDAVMTQLRQEGWIHHLARHSVACFLTRGDLWINWEEGMK 373
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + + P+ FG++ D DG I++YVP+L ++
Sbjct: 374 VFEEYLLDADWSLNAGNWMWLSASAFFHQYFRVYSPIEFGKKTDKDGDNIRKYVPQLSKY 433
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
P YIYEPWKAPL VQEKA CI+ KDYP+ IV H + +N
Sbjct: 434 PTAYIYEPWKAPLKVQEKAGCIVGKDYPKPIVEHDKIRKKN 474
>gi|149725124|ref|XP_001490350.1| PREDICTED: cryptochrome-2-like [Equus caballus]
Length = 579
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 208/449 (46%), Gaps = 102/449 (22%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE---------- 64
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E
Sbjct: 64 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 123
Query: 65 -------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKEDI 104
GV+ G PP Y+ + +++ +L P +P +
Sbjct: 124 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMEL---PRKPVGSV 180
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERL 164
+ + + +Q VP E+ +P G + W GGETEAL +L++ L
Sbjct: 181 TSQQME--SCRADIQENHDETYGVPSLEELG-FPTEGLGPAV--WQGGETEALARLDKHL 235
Query: 165 SQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
E +++ + + L PT S L+FGCLS R FY+ L D + + P
Sbjct: 236 --ERKAWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNSTPP 293
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W +TG+
Sbjct: 294 -LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEAKTGF 347
Query: 285 PFIDAVMRQLRR-----------------------------------LLDCTY------- 302
P+IDA+M QLR+ LLD +
Sbjct: 348 PWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSW 407
Query: 303 --------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
C CPV FGRR DP G YI+RY+P+L+ FP +YIYEPW AP VQ+
Sbjct: 408 MWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPEAVQKA 467
Query: 349 ANCIISKDYPERIVNHVQASLENKQYLKK 377
A CII DYP IVNH + S N + +K+
Sbjct: 468 AKCIIGVDYPRPIVNHAETSRLNIERMKQ 496
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/466 (30%), Positives = 216/466 (46%), Gaps = 110/466 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +G N++RFLL+CL DLD L+ +LF+++G P +F K+ +E N T L FE+
Sbjct: 736 FAGSSQVGINKWRFLLQCLEDLDTSLRKLNSRLFVLRGQPTDLFPKIFKEWNITTLSFEE 795
Query: 62 DCE------------------------------GVKPYQSFPTGSHPPRYQPCKTLLNFR 91
D E ++ + GS P Y+ +++L
Sbjct: 796 DPEPFGKERDGAIQMLAKEAGVEVIVKTSHTLYDLQKIIAMNGGSPPLTYKRFQSVLAKM 855
Query: 92 DLSGLPPRPKEDID--FRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
+ P P+E I+ F T ++E + VP E+ + G +
Sbjct: 856 EA---PSEPEETINSGFLVKTKTPIAEDHDDKYG----VPTLEELG-FDTEGLGPAVFH- 906
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGE EAL +L L ++ + SF+ + P S L+FGCLS R FY
Sbjct: 907 -GGEAEALTRLERHLERKAWVASFERPKMSQQSLFPS----QNVLSPYLRFGCLSARLFY 961
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
W L + + + + + P ++ GQL+WRE+FYT++ +NP +D+M+ NP+C+ IPW + +
Sbjct: 962 WKLRELYRKVKKRKDPP-LSLHGQLLWREFFYTVATNNPNFDRMKDNPLCVQIPW--DKN 1018
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P L W G+TG+P+IDA+M QLR+
Sbjct: 1019 PEA---LAKWAEGKTGFPWIDAIMMQLRQTGWIHNLARHSVACFLTRGDLWISWEEGMKV 1075
Query: 297 ----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV FG+R DP G +I+ Y+P L+ +P
Sbjct: 1076 FEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVGFGKRADPTGDFIRTYLPVLKGYP 1135
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIYEPW AP VQ A CII KDYP +VNH + S N +K+
Sbjct: 1136 AKYIYEPWTAPESVQRAAKCIIGKDYPVPMVNHAEVSKLNTGRMKQ 1181
>gi|390470436|ref|XP_003734285.1| PREDICTED: cryptochrome-2 isoform 2 [Callithrix jacchus]
Length = 560
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 210/454 (46%), Gaps = 112/454 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE---------- 64
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E
Sbjct: 40 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 99
Query: 65 -------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKEDI 104
GV+ G PP Y+ + +++ +L P +P +
Sbjct: 100 MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMEL---PKKPVGSV 156
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERL 164
+ + + +Q VP E+ +P G + W GGETEAL +L++ L
Sbjct: 157 TSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHL 211
Query: 165 SQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
++ +++N P L PT S L+FGCLS R FY+ L D + +
Sbjct: 212 ERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKR 264
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W
Sbjct: 265 NSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAE 318
Query: 280 GQTGYPFIDAVMRQLRR-----------------------------------LLDCTY-- 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 319 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 378
Query: 303 -------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
C CPV FGRR DP G YI+RY+P+L+ FP +YIYEPW AP
Sbjct: 379 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 438
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+Q+ A CII DYP IVNH + S N + +K+
Sbjct: 439 SIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 472
>gi|426368089|ref|XP_004051045.1| PREDICTED: cryptochrome-2 isoform 2 [Gorilla gorilla gorilla]
Length = 532
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 213/466 (45%), Gaps = 117/466 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG H FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 5 PGRTHTW-----FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD 59
Query: 63 CE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRD 92
E GV+ G PP Y+ + +++ +
Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGG 152
L P +P + + + + +Q VP E+ +P G + W GG
Sbjct: 120 L---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQGG 171
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFY 207
ETEAL +L++ L ++ +++N P L PT S L+FGCLS R FY
Sbjct: 172 ETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 224
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +
Sbjct: 225 YRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRN 281
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P L W G+TG+P+IDA+M QLR+
Sbjct: 282 PEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV 338
Query: 297 ----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV FGRR DP G YI+RY+P+L+ FP
Sbjct: 339 FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP 398
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 399 SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 444
>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
gi|397473569|ref|XP_003808280.1| PREDICTED: cryptochrome-2 isoform 2 [Pan paniscus]
Length = 532
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 213/466 (45%), Gaps = 117/466 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG H FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 5 PGRTHTW-----FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD 59
Query: 63 CE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRD 92
E GV+ G PP Y+ + +++ +
Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGG 152
L P +P + + + + +Q VP E+ +P G + W GG
Sbjct: 120 L---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQGG 171
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFY 207
ETEAL +L++ L ++ +++N P L PT S L+FGCLS R FY
Sbjct: 172 ETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 224
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +
Sbjct: 225 YRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRN 281
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P L W G+TG+P+IDA+M QLR+
Sbjct: 282 PEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRV 338
Query: 297 ----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + C CPV FGRR DP G YI+RY+P+L+ FP
Sbjct: 339 FDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP 398
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 399 SRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 444
>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
Length = 643
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 141/476 (29%), Positives = 219/476 (46%), Gaps = 127/476 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +IF +L ++ N ++L FE
Sbjct: 41 FAGSSNLGVNRWRFLLQCLEDLDSSLRKLNSRLFVIRGQPANIFPRLFKDWNISQLTFEC 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPPRYQPCKTLLNFRD 92
D E GV+ G HPP T +F+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVVSRISHTLYDLDKIIELNGGHPPL-----TFKHFQT 155
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR---- 148
L P P + E+L R S+ + V H+ +G PL+
Sbjct: 156 LVDSMPPPDAPV-----------EALSR-ASMGRCVTPVSDNHRD---KYGVPLLEELGF 200
Query: 149 ---------WLGGETEALIKLNERLSQEIES-FKSGVYLSNQVSPDLTGPPTSQSAALKF 198
W GGE+EAL ++ +L ++ + ++ + + + L P S L+F
Sbjct: 201 DTEGLAPAVWPGGESEALTRIERQLGPDLSTAWQVNFESTRKTASPLLPSPLGLSPYLRF 260
Query: 199 GCLSVRRFYWALHDHFNTIH-EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
GCLS R FY L + + + G PP ++ +L+WRE+FYT + +NP +D+M+ NPIC
Sbjct: 261 GCLSCRLFYSKLAELYKKVKTNGSPP--ISLYDKLLWREFFYTAATNNPRFDKMDGNPIC 318
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + L W +TG+P+IDA+M QLR+
Sbjct: 319 IRIPW-----DRNAEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 373
Query: 297 --------------LLDCTY---------------------CVCPVNFGRRLDPDGIYIK 321
LLD + C CPV FGR++DP G +I+
Sbjct: 374 WISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRKIDPKGDFIR 433
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
RY+P L+ P +YIY+PW AP+ VQ A C++ DYP+ +VNH +AS N + +++
Sbjct: 434 RYLPVLKDMPDKYIYDPWNAPIEVQRAAKCVVGVDYPKPMVNHAEASRLNIERMRQ 489
>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
Length = 531
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 210/450 (46%), Gaps = 111/450 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R RFLL+ L DLD L+ +LF+V+G P +F +L +E F+ FE Y S
Sbjct: 29 RGRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKECKFSTPTFE--------YDS 80
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKE-----DIDFRHVTFGTMSESL-----QRE 121
P G ++ +G+ + D+D R + S L Q
Sbjct: 81 EPFGKERD-----AVIMKLAKEAGVEVIVENSHTLYDLD-RIIELNGHSPPLTYKRFQAI 134
Query: 122 VSLFQTVPKPEQFHKYPEMDFGDPLIR-------------WLGGETEALIKLNERLSQEI 168
+S + +P +M+ + L W GGETEAL +L+ L ++
Sbjct: 135 ISRMELPRRPAPSVTRQQMEGCNSLCIASGFHSEIKGPSIWPGGETEALARLDRHLERK- 193
Query: 169 ESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
+++N P L PT S L+FGCLS R FY+ L + + + + PP
Sbjct: 194 ------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVKKNSPP 247
Query: 224 SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
++ GQL+WRE+FYT + +NP +DQME NPIC+ IPW + +P K L W G+TG
Sbjct: 248 P-LSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPW--DKNP---KALAKWAEGKTG 301
Query: 284 YPFIDAVMRQLRR-----------------------------------LLDCTY------ 302
+P+IDA+M QLR+ LLD +
Sbjct: 302 FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGS 361
Query: 303 ---------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
C CPV FGRR DP G Y++RY+P L+ FP +YIYEPW AP VQ+
Sbjct: 362 WMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQK 421
Query: 348 KANCIISKDYPERIVNHVQASLENKQYLKK 377
+A CII DYP+ IVNH +AS N + +K+
Sbjct: 422 EAKCIIGIDYPKPIVNHAEASRMNIERMKQ 451
>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
Length = 540
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 213/454 (46%), Gaps = 112/454 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE---------- 64
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E
Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 80
Query: 65 -------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKEDI 104
GV+ G+ PP Y+ + +++ +L P +P I
Sbjct: 81 IKLAKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMEL---PKKPVSSI 137
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERL 164
+ + T +Q VP E+ +P D P + W GGETEAL +L++ L
Sbjct: 138 VSQQME--TCKVDIQENHDDMYGVPSLEELG-FP-TDGLAPAV-WQGGETEALARLDKHL 192
Query: 165 SQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
++ +++N P L PT S L+FGCLS R FY+ L + + +
Sbjct: 193 ERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKR 245
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W
Sbjct: 246 NSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DKNPEA---LAKWAE 299
Query: 280 GQTGYPFIDAVMRQLRR-----------------------------------LLDCTY-- 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 300 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSV 359
Query: 303 -------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
C CPV FGRR DP G Y+KRY+P+L+ FP +YIYEPW AP
Sbjct: 360 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPE 419
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 420 SVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 453
>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
Length = 532
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 216/470 (45%), Gaps = 125/470 (26%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG H FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D
Sbjct: 5 PGRTHTW-----FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD 59
Query: 63 CE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRD 92
E GV+ G PP Y+ + +++ +
Sbjct: 60 SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLIR 148
L PK+ + VT M ES + E+ VP E+ +P G +
Sbjct: 120 L------PKKPVGL--VTSQQM-ESCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV-- 167
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSV 203
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 168 WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSC 220
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 221 RLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW- 278
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 279 -DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 334
Query: 297 --------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPEL 327
LLD + C CPV FGRR DP G YI+RY+P+L
Sbjct: 335 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKL 394
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 395 KAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 444
>gi|355681095|gb|AER96735.1| cryptochrome 2 [Mustela putorius furo]
Length = 521
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 209/454 (46%), Gaps = 112/454 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE---------- 64
FLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE D E
Sbjct: 1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 60
Query: 65 -------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKEDI 104
GV+ G PP Y+ + +++ +L P +P +
Sbjct: 61 MKMAKEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMEL---PKKPVGSV 117
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERL 164
+ + + +Q VP E+ +P G + W GGETEAL +L++ L
Sbjct: 118 TSQQME--SCRADIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHL 172
Query: 165 SQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
++ +++N P L PT S L+FGCLS R FY+ L D + +
Sbjct: 173 ERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKR 225
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W
Sbjct: 226 NSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAE 279
Query: 280 GQTGYPFIDAVMRQLRR-----------------------------------LLDCTY-- 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 280 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 339
Query: 303 -------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
C CPV FGRR DP G YI+RY+P L+ FP +YIYEPW AP
Sbjct: 340 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPE 399
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+Q+ A CII DYP IVNH + S N + +K+
Sbjct: 400 SIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 433
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 211/463 (45%), Gaps = 104/463 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ +G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E T+L +E
Sbjct: 41 FAGSSSVGINRWRFLLDCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ HPP Y+ + +++
Sbjct: 101 DSEPFGKERDAAVHKLASEAGVEVIVRISHTLYSLAKIIELNDGHPPLTYKRFQDIISQM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D P D T + + S VP E+ E G W G
Sbjct: 161 DAVEHPAETVTQRDLDKCT-----TPISKNHSDKFGVPSLEELGFETE---GLSAAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL++L + L G S+ + L PT L+FGCLS R FY+ L
Sbjct: 213 GETEALMRLEQHLEWRESVLNHGC--SHIDARSLLANPTVLCPYLRFGCLSCRLFYFRLT 270
Query: 212 DHFNTIHEGR-PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ I + PP +F QL+W E+ YT+S +NP +D+ME NP+C+ IPW + +P
Sbjct: 271 ELHKKIKQNNIPPPYF--YDQLLWSEFLYTVSTNNPCFDKMEGNPVCIQIPW--DRNP-- 324
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------------- 296
+ L W G+TG+P+IDA+M QL++
Sbjct: 325 -EALAKWAEGRTGFPWIDAIMTQLKQEGWIHSLAKYSVACFLTRGDLWISWEEGMKAFEE 383
Query: 297 -LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
L+D + C CPV GRR DP G YI+RY+P LR FP +Y
Sbjct: 384 LLIDADWSMNAGSWMWFSCSSFFRQFFHCRCPVESGRRKDPQGDYIRRYLPVLRGFPAKY 443
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
IY+PW AP VQ++ANCII YP+ +VNH +AS N + +K+
Sbjct: 444 IYDPWNAPEEVQKEANCIIGVHYPKPMVNHAEASCINIERMKQ 486
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 216/469 (46%), Gaps = 118/469 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 65 GAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 124
Query: 64 E-----------------GVKPYQSF------------PTGSHPPRYQPCKTLLNFRDLS 94
E G++ Y G PP K L+ +
Sbjct: 125 EPYYTRMDKDIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPP--LTYKKFLHVLSVL 182
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFG---DPLIRWL 150
G P +P D+ E QR V T ++ + P + D G + + W
Sbjct: 183 GEPEKPARDVSI---------EDFQRCV----TPVDVDRVYAVPSLADLGLQVEAEVLWP 229
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE+ AL +L + + + +F + N + P TG S L GCLSVR FY
Sbjct: 230 GGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTG----LSPYLSLGCLSVRTFYH 285
Query: 209 ALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
L+ + + + PP ++ GQ++WRE+FYT+++ P + +ME N ICL I W +
Sbjct: 286 RLNSIYAQSKNHSLPP--VSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHD-- 341
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P + L W+ QTG+P+IDA+M QLR+
Sbjct: 342 PER---LEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWITWEEGMKV 398
Query: 297 ----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD Y V CPV FGRR DP G Y+++Y+P L+ FP
Sbjct: 399 FEEFLLDADYSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFP 458
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
QYIYEPWKAP VQ A CII KDYP IV+H++AS N +++ +
Sbjct: 459 SQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRNLALMRQVRT 507
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 216/469 (46%), Gaps = 118/469 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 44 GAMHMGALRWRFLLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 103
Query: 64 E-----------------GVKPYQSF------------PTGSHPPRYQPCKTLLNFRDLS 94
E G++ Y G PP K L+ +
Sbjct: 104 EPYYTRMDKDIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPP--LTYKKFLHVLSVL 161
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFG---DPLIRWL 150
G P +P D+ E QR V T ++ + P + D G + + W
Sbjct: 162 GEPEKPARDVSI---------EDFQRCV----TPVDVDRVYAVPSLADLGLQVEAEVLWP 208
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE+ AL +L + + + +F + N + P TG S L GCLSVR FY
Sbjct: 209 GGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTG----LSPYLSLGCLSVRTFYH 264
Query: 209 ALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
L+ + + + PP ++ GQ++WRE+FYT+++ P + +ME N ICL I W +
Sbjct: 265 RLNSIYAQSKNHSLPP--VSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHD-- 320
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P + L W+ QTG+P+IDA+M QLR+
Sbjct: 321 PER---LEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWITWEEGMKV 377
Query: 297 ----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD Y V CPV FGRR DP G Y+++Y+P L+ FP
Sbjct: 378 FEEFLLDADYSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFP 437
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
QYIYEPWKAP VQ A CII KDYP IV+H++AS N +++ +
Sbjct: 438 SQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRNLALMRQVRT 486
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/464 (31%), Positives = 204/464 (43%), Gaps = 107/464 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL------------- 48
F G+ +IG N++RFLL+CL DLD L+ +LF+++G P KL
Sbjct: 59 FAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 118
Query: 49 -------KRELNFTKLCFEQDCEGVKPYQSF----------PTGSHPPRYQPCKTLLNFR 91
R+ N + LC E V+ P Y +T++
Sbjct: 119 DPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDKSPLTYHQFQTVVASM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D G+ L+ + VP E+ + P+ W+G
Sbjct: 179 DPP-----EPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEEL-GFDTEGLLPPV--WVG 230
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 231 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 286
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L D + I + PP ++ GQL+WRE+FY + NP +D+M+ NPIC+ IPW
Sbjct: 287 LTDLYKKIKKAVPP--LSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPW-----DK 339
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 340 NVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFD 399
Query: 297 --LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +
Sbjct: 400 ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTR 459
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YI+EPW APL VQ A CII KDY +VNH ++S N + +K+
Sbjct: 460 YIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQ 503
>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
Length = 526
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 214/470 (45%), Gaps = 113/470 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL++ L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPKNMQVSVNRWRFLIDALKDLDENLKKINSRLFVVRGKPAEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCE-----------------GVKPYQSFPT-------------GSHPPRYQPCKTLLNFR 91
D E V+ Q G P Y +T+L
Sbjct: 101 DIEPYSRQRDAEVEKLAAEHDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLA-- 158
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT---VPKPEQFHKYPEMDFGDPLIR 148
G P RP + T M + S + VP E+ + P M G L
Sbjct: 159 -PLGPPKRP-----IKAPTLENMKDCHTPWKSSYDEKYGVPTLEELGQDP-MKLGPHL-- 209
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
+ GGE+EAL +L+ + + + +FK N ++P T S +KFGCLS R F
Sbjct: 210 YPGGESEALSRLDLHMKRTSWVCNFKKPETEPNSLTPSTT----VLSPYVKFGCLSARTF 265
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+W + D + PP ++ GQL+WRE++YT A P +++ME NP+C+ + W
Sbjct: 266 WWKIADIYQGKKHSDPP--VSLHGQLLWREFYYTTGAGIPNFNKMEGNPVCVQVDW---- 319
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
N +++L AW G+TGYPFIDA+M QLR
Sbjct: 320 -DNNKEHLEAWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQK 378
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + + PV FG++ D +G YIK+Y+P L++F
Sbjct: 379 VFEELLLDADWSLNAGNWLWLSASAFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPILKKF 438
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
P +YIYEPWK+P +QE+A CII KDYP+ IV H S +N Q +K A
Sbjct: 439 PAEYIYEPWKSPRSLQERAGCIIGKDYPKPIVEHNVVSKQNIQRMKAAYA 488
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 218/463 (47%), Gaps = 110/463 (23%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR+RFLLE L DLD ++ G +LF+V+G+P ++F ++ ++ N T+L FE D E
Sbjct: 48 VGINRWRFLLETLQDLDYSFRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVDTE--- 104
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE---SLQREVSL 124
PY R Q L D+ + D + + QR V L
Sbjct: 105 PYARR-------RDQEVIELAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGL 157
Query: 125 FQTVPKPEQFHKYPEM----------------DFGDPLIRWLG-------------GETE 155
+ P P M ++G P + LG GETE
Sbjct: 158 LSEIGAPAIPELPPLMANFTGVATPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETE 217
Query: 156 ALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHF 214
L +++ L+++ S+ G + + SP+ P T+ S LK+GCLS R+FY+A+ + +
Sbjct: 218 GLQRMDLHLARK--SWVCG-FEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVY 274
Query: 215 -NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ +PP ++ GQLIWRE+FYT++A P + QME+NPIC+ +PW + +P ++
Sbjct: 275 AQQTNCTKPP--VSLMGQLIWREFFYTVAAGTPNFHQMEENPICIQVPW--DENP---EF 327
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L AWK G+TGYP+IDA+M QLR LL
Sbjct: 328 LAAWKEGRTGYPYIDAIMTQLRTEGWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWLL 387
Query: 299 DCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D Y + PV FG++ D G YI++Y+P L + P +YIYE
Sbjct: 388 DADYSLNAANWMWLSSSAFFHQYYRVYSPVVFGKKTDKTGEYIRKYIPALNKLPAEYIYE 447
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
PW AP VQE A CII +DYP IV+H S N +K +A
Sbjct: 448 PWTAPRSVQEAAGCIIGRDYPRPIVDHSIVSKRNIGRMKDARA 490
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 145/473 (30%), Positives = 207/473 (43%), Gaps = 116/473 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLD L+ +LF+++G P KL +E T L FE+
Sbjct: 61 FAGSTNVGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 120
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E G+ Q G P Y + ++
Sbjct: 121 DSEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIV--- 177
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S PP P G L+ + VP E+ + P+ W+G
Sbjct: 178 -ASMNPPEPPVST-VTAACIGNAYTPLKDDHDDHYGVPTLEEL-GFDTEGLLPPV--WVG 232
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GE+EAL +L L ++ + SF + P TG S L+FGCLS R FY+
Sbjct: 233 GESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQ 288
Query: 210 LHDHFN---------TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
L D + I + PP ++ GQL+WRE+FY + N +D+M+ NPIC+ I
Sbjct: 289 LTDLYKKVQDDCNPIVIKKAVPP--LSLHGQLLWREFFYCAATKNSNFDRMQGNPICVQI 346
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------ 296
PW + L W NGQTG+P+IDA+M QLR
Sbjct: 347 PW-----DKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWIS 401
Query: 297 -----------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYV 324
LLD + C CPV FGR+ DP+G YI+RY+
Sbjct: 402 WEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYL 461
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P L+ FP +YI+EPW APL +Q A C+I K+Y +VNH + S N + +K+
Sbjct: 462 PVLKNFPTRYIHEPWNAPLSIQHAAKCVIGKEYSLPMVNHNKTSRINIERMKQ 514
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 226/489 (46%), Gaps = 104/489 (21%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L I++G P + + +E KLCFE D
Sbjct: 54 PGSRLAGLNRIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYD 113
Query: 63 CE--------GVKPYQS------FPTGSH----PPRY------QPCKTLLNFRDLSGLPP 98
+ VK Y S F SH P +P T +F L+G P
Sbjct: 114 TDPHYQALDIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPS 173
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL---GGETE 155
+ + + + E+S T+ ++ +GD W+ GGE+E
Sbjct: 174 WASSPLLTSISSLPPVGDVGSCEISEVPTIK---------DLGYGDIEQEWIPFRGGESE 224
Query: 156 ALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
AL +L E +S + + +F+ S + T S LKFGCLS R FY L D
Sbjct: 225 ALKRLKESISDKEWVANFEKP---KGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDV 281
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ + + P ++ GQL+WR++FYT++ P +D+ME N +C IPW + ++
Sbjct: 282 YKNVQKHTSPP-VSLAGQLLWRDFFYTVAFGTPNFDRMEGNKLCKQIPW-----NDDDEL 335
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L AW+ +TGYP+IDA+M QLR+ L+
Sbjct: 336 LAAWREARTGYPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFLHWERGRDVFERLLI 395
Query: 299 DCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + + P++FG++ DP+G YI+ ++P L+ P +YIYE
Sbjct: 396 DSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYE 455
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA-NCIINKDYPERIVNHV 396
PW AP G+Q KA CII +DYP+ +V H AS E K+ L + A N +N + ++++
Sbjct: 456 PWTAPPGIQRKAKCIIGRDYPKPVVYHDSASKECKRKLAEAYALNKKLNGQLSQEDLDNL 515
Query: 397 QASLENKQN 405
+ LE ++
Sbjct: 516 RRKLEQDED 524
>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
Length = 531
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 150/486 (30%), Positives = 223/486 (45%), Gaps = 126/486 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPRNMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCE-----------------GVKPYQSFPT-------------GSHPPRYQPCKTLLNFR 91
D E V+ Q G P Y +T+L
Sbjct: 101 DTEPYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLA-- 158
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT-------VPKPEQFHKYPEMDFGD 144
L G P RP + E+++ +L+++ VP E+ + + G
Sbjct: 159 -LLGPPKRPVQ---------VPTQENMKDCCTLWKSSYNEKYGVPTLEELGQ-DSLKLGP 207
Query: 145 PLIRWLGGETEAL--IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
L + GGE+EAL ++L+ + + + +FK N ++P T S +KFGCLS
Sbjct: 208 RL--YPGGESEALSRLELHMKRTTWVCNFKKPETEPNSLTPSTT----VLSPYVKFGCLS 261
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R F+W + D + PP ++ GQL+WRE+FYT P +++ME N +C+ + W
Sbjct: 262 ARTFWWRIADIYQGKKHSDPP--VSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCVQVDW 319
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
N +++L AW G+TGYPFIDA+M QLR
Sbjct: 320 -----GNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWE 374
Query: 297 ---------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPE 326
LLD + + PV FG++ D +G YIK+Y+P
Sbjct: 375 EGQKVFEELLLDADWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPI 434
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ-----YLKKEKAN 381
L++FP +YIYEPWKAP +QE+A CII KDYP+ IV H AS +N Q Y ++ +
Sbjct: 435 LKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAAYARRSGST 494
Query: 382 CIINKD 387
++KD
Sbjct: 495 AEVDKD 500
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 218/493 (44%), Gaps = 136/493 (27%)
Query: 2 FPGTMHIGYNRFR-----------------FLLECLADLDRQLKSHGGQLFIVQGSPISI 44
F G+ ++G NR+R FLL+ L DLD L+ +LF+++G P +
Sbjct: 41 FAGSSNVGINRWRICLRSPLTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDV 100
Query: 45 FQKL-----------KRELNFTKLCFEQDCE--------GVKPYQS-------------- 71
F +L +E N ++L +E D E +K S
Sbjct: 101 FPRLFKAHPTVAVYVPQEWNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTL 160
Query: 72 --------FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
G P Y+ +TL++ D +P E I G + L +
Sbjct: 161 YDLDKIIELNGGQSPLTYKRFQTLISRMDPVEVP---AESITAE--IMGKCTTPLSDDHD 215
Query: 124 LFQTVPKPEQFHKYPEMDFGDPLIR---WLGGETEALIKLNERLSQEIESFKSGVYLSNQ 180
VP E E+ F ++ W GGETEAL +L L E +++ +
Sbjct: 216 DKYGVPSLE------ELGFDTEVLSSAVWPGGETEALTRLERHL--ERKAWVANFERPRM 267
Query: 181 VSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYT 240
+ L PT S L+FGCLS R FY+ L D + + + P ++ GQL+WRE+FYT
Sbjct: 268 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVKKNSSPP-LSLYGQLLWREFFYT 326
Query: 241 MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR---- 296
+ +NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 327 AATNNPCFDKMENNPICVQIPW--DRNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWI 381
Query: 297 -------------------------------LLDCTY---------------------CV 304
LLD + C
Sbjct: 382 HHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCY 441
Query: 305 CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP VQ+ A C+I YP+ +VNH
Sbjct: 442 CPVGFGRRTDPNGDYIRRYLPILRGFPAKYIYDPWNAPESVQKAAKCLIGVHYPKPMVNH 501
Query: 365 VQASLENKQYLKK 377
+AS N + +K+
Sbjct: 502 AEASRLNIERMKQ 514
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 212/462 (45%), Gaps = 103/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL D+D L++ +LF+V+G P + +L +E N T L FE+
Sbjct: 89 FAGSSNVGVNKWRFLLQCLEDVDNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEE 148
Query: 62 DCE-----------GVKPYQSFPT---GSHPP----------------RYQPCKTLLNFR 91
D E G+ SH Y+ + +L
Sbjct: 149 DPEPFGRARDASIIGIAQEMGIEVIVRTSHTLYELDKIIKKKGGKPPLTYKTFQNILAMM 208
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D P P E D +H LQ + VP E H E + P + W G
Sbjct: 209 DPPPPPVAPIEASDLKHAY-----TPLQHDHDDKYGVPNLE--HLGFETEHLPPAV-WKG 260
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + L PT S L+FGCLS R+FY L+
Sbjct: 261 GETEALSRLKHHL--ERKAWVASFGRPKMTPQSLFACPTGLSPYLRFGCLSARKFYTELN 318
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ I + P+ ++ G L+WRE+FYT + +NP +D M+ NPIC+ IPW + +P
Sbjct: 319 VLYTKIK--KVPAPVSLHGHLLWREFFYTAATNNPKFDHMKGNPICVQIPW--DKNP--- 371
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 372 EALAKWAHGQTGFPWIDAIMTQLRTEGWIHNVARHAVACFLTRGNLWVSWEEGMKVFDEL 431
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV +GR+ DP+G +I+ Y+P L+ FP +YI
Sbjct: 432 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVRYGRKADPNGDFIRTYLPVLKNFPTKYI 491
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW AP VQ A CII + YP +V+H S N + +K+
Sbjct: 492 HEPWMAPESVQRNARCIIGQHYPLPMVDHGTQSQNNIERMKQ 533
>gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides]
Length = 264
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 136/205 (66%), Gaps = 10/205 (4%)
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGET 154
G PPRP DIDF V FG++ +S +E ++F +PKPE + E + +IRW+GGET
Sbjct: 14 GDPPRPVGDIDFTGVKFGSLPDSFYQEFTVFDKIPKPEDLGVFLENE-DVRMIRWVGGET 72
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
AL ++ +RL+ + E+F G YL +PDL G P S S AL+FGCLSVR F W++ D F
Sbjct: 73 TALKQMQQRLAVKYETFLRGSYLPTHGNPDLLGRPISLSPALRFGCLSVRSFCWSVQDLF 132
Query: 215 NTIHEGR----PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+H+GR SHF ITGQLIWREYFYTMS +NP Y QM NPICL+IPW +P
Sbjct: 133 REVHQGRLATQSASHF-ITGQLIWREYFYTMSVNNPNYGQMSGNPICLDIPW---KNPEG 188
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR 295
++ L W G+TG+PF+DA MRQLR
Sbjct: 189 DE-LQRWVEGRTGFPFVDAAMRQLR 212
>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 220/486 (45%), Gaps = 126/486 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPRNMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCEGVKPY--------QSFPTGSHPPRYQPCKTLLNFRDL-----SGLPPRPKEDIDFRH 108
D E PY + + Q L D +G PP +
Sbjct: 101 DTE---PYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPP-------LTY 150
Query: 109 VTFGTMSESL---QREVSLFQTVPKPEQF--------HKYPEMDFGDPLIRWLG------ 151
V F T+ SL +R V VP E Y E +G P + LG
Sbjct: 151 VRFQTVLASLGPPKRPVQ----VPTQENMKDCCTLWKSSYNE-KYGVPTLEELGQDSLKL 205
Query: 152 -------GETEAL--IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
GE+EAL ++L+ + + + +FK N ++P T S +KFGCLS
Sbjct: 206 GPRLYPGGESEALSRLELHMKRTTWVCNFKKPETEPNSLTPSTT----VLSPYVKFGCLS 261
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R F+W + + + PP ++ GQL+WRE+FYT P +++ME N +C+ + W
Sbjct: 262 ARTFWWRIAEIYQGKKHSDPP--VSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCVQVDW 319
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
N +++L AW G+TGYPFIDA+M QLR
Sbjct: 320 -----GNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWE 374
Query: 297 ---------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPE 326
LLD + + PV FG++ D +G YIK+Y+P
Sbjct: 375 EGQKVFEELLLDADWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPI 434
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ-----YLKKEKAN 381
L++FP +YIYEPWKAP +QE+A CII KDYP+ IV H AS +N Q Y ++ +
Sbjct: 435 LKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAAYARRSGST 494
Query: 382 CIINKD 387
++KD
Sbjct: 495 AEVDKD 500
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 147/462 (31%), Positives = 221/462 (47%), Gaps = 114/462 (24%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+ +G NR+RFL + LADLDR L+ +L++V+G+P+ +F KL +E N + L FE D E
Sbjct: 53 LRVGPNRWRFLQQTLADLDRNLRKINSRLYVVRGNPVDVFPKLFQEWNVSFLTFEHDIE- 111
Query: 66 VKPYQSFPTGS-------HPPRYQPCKTLLNF------RDLSGLPPRPKEDIDFRHVTFG 112
PY + H + Q K+L + + +G PP + +G
Sbjct: 112 --PYSIKRDATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPP-------LTYQKYG 162
Query: 113 TMSESLQ--------REVSLFQTVPKPEQFHKYPEMDFGDPLI-------------RWLG 151
+++ +L+ +E+ VPK + + + PL+ ++ G
Sbjct: 163 SLASTLKIPEPVATPKEIP-SDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPG 221
Query: 152 GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
GETEAL +L + + ++ + SF+ N + P T S +KFGCLS R F
Sbjct: 222 GETEALRRLEDHMKRKSWVCSFEKPNTSPNSLEPSTT----VLSPYVKFGCLSARLFMRE 277
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L +PP ++ GQL+WRE++Y +A P +D+M N ICL++PW N
Sbjct: 278 LQTVIKGQKHSQPP--VSLIGQLMWREFYYCAAADEPNFDKMVGNSICLHVPW----DSN 331
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
KE +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 332 KE-FLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFE 390
Query: 297 --LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + + PV FG++ DP+G +IK+YVPEL ++P
Sbjct: 391 EFLLDADWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSG 450
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
IYEPWKA + VQ+K CII KDYP RIV H + +N Q +
Sbjct: 451 IIYEPWKASVDVQKKLGCIIGKDYPNRIVIHEEIHKKNIQKM 492
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 204/459 (44%), Gaps = 97/459 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL------------- 48
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL
Sbjct: 55 FAGSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEE 114
Query: 49 -------KRELNFTKLCFEQDCEGVK--PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPR 99
R+ N T LC E V+ + + R L + L+ +
Sbjct: 115 DPEPFGGVRDHNLTTLCQELGISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACM 174
Query: 100 PKEDIDFRHVTFGTMSES---LQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
VTF +++ + L + VP E+ E G W GGE+EA
Sbjct: 175 GPPPQPEPPVTFNSLNGAHTPLTDDHDEKYGVPTLEELGFDTE---GRLPPVWQGGESEA 231
Query: 157 LIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
L +L L ++ + SF + P TG S L+FGCLS R FY+ L D +
Sbjct: 232 LARLERHLERKAWVASFGRPKMTPQSLLPSQTG----LSPYLRFGCLSTRLFYYQLTDLY 287
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW + L
Sbjct: 288 KKIKKAFPP--LSLHGQLLWREFFYCAATKNPNFDKMIGNPICVQIPW-----DKNAEAL 340
Query: 275 NAWKNGQTGYPFIDAVMRQLRR-----------------------------------LLD 299
W NGQTG+P+IDA+M QLR LLD
Sbjct: 341 AKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWLSWEEGMKVFEELLLD 400
Query: 300 CTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ C CP+ FGR+ DP+G YI++Y+P L+ P QYI+EP
Sbjct: 401 ADWSVNAGMWMWLSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLKNMPSQYIHEP 460
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
W AP VQ A CII KDY +VNH AS N Q +K+
Sbjct: 461 WTAPEQVQRAAKCIIGKDYSLPMVNHAAASRVNIQRMKQ 499
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 212/470 (45%), Gaps = 120/470 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 44 GAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 103
Query: 64 E-----------------GVKPYQSF------------PTGSHPPRYQPCKTLLNFRDLS 94
E G++ Y G PP K L+ +
Sbjct: 104 EPYYTRMDKDIQTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPL--TYKKFLHVLSVL 161
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQR-----EVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
G P +P D+ E QR +V VP E + + W
Sbjct: 162 GEPEKPARDVSI---------EDFQRCVTPVDVDRVYAVPSLAHLGLQVEAE-----VLW 207
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGE+ AL +L + + + +F + N + P TG S L GCLSVR FY
Sbjct: 208 PGGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTG----LSPYLSLGCLSVRTFY 263
Query: 208 WALH-DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
L+ + + + PP ++ GQ++WRE+FYT+++ P + +ME N ICL I W +
Sbjct: 264 HRLNCIYAQSKNHSLPP--VSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHD- 320
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
P + L W+ QTG+P+IDA+M QL +
Sbjct: 321 -PER---LEKWRTAQTGFPWIDAIMTQLLQEGWIHHLARHAVACFLTRGDLWISWEEGMK 376
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD Y V CPV FGRR DP G Y+++Y+P L+ F
Sbjct: 377 VFEEFLLDADYSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNF 436
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
P QYIYEPWKAP VQ A CII KDYP IV+H++AS N + +++ +
Sbjct: 437 PSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHIEASQRNLELMRQVRT 486
>gi|187608706|ref|NP_001120012.1| uncharacterized protein LOC100144974 [Xenopus (Silurana)
tropicalis]
gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 220/486 (45%), Gaps = 126/486 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP M + NR+RFL+E L DLD LK +LF+V+G P +F L ++ T+L FE
Sbjct: 41 FPRNMKVSVNRWRFLIEALKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEV 100
Query: 62 DCEGVKPY--------QSFPTGSHPPRYQPCKTLLNFRDL-----SGLPPRPKEDIDFRH 108
D E PY + + Q L D +G PP +
Sbjct: 101 DTE---PYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDRIIAENNGKPP-------LTY 150
Query: 109 VTFGTMSESL---QREVSLFQTVPKPEQF--------HKYPEMDFGDPLIRWLG------ 151
V F T+ SL +R V VP E Y E +G P + LG
Sbjct: 151 VRFQTVLASLGPPKRPVQ----VPTQENMKDCCTLWKSSYNE-KYGVPTLEELGQDSLKL 205
Query: 152 -------GETEAL--IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
GE+EAL ++L+ + + + +FK N ++P T S +KFGCLS
Sbjct: 206 GPRLYPGGESEALSRLELHMKRTTWVCNFKKPETEPNSLTPSTT----VLSPYVKFGCLS 261
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R F+W + + + PP ++ GQL+WRE+FYT P +++ME N +C+ + W
Sbjct: 262 ARTFWWRIAEIYQGKKHSDPP--VSLHGQLLWREFFYTAGVGIPNFNKMEGNIVCVQVDW 319
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
N +++L AW G+TGYPFIDA+M QLR
Sbjct: 320 -----GNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWE 374
Query: 297 ---------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPE 326
LLD + + PV FG++ D +G YIK+Y+P
Sbjct: 375 EGQKVFEELLLDADWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPI 434
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ-----YLKKEKAN 381
L++FP +YIYEPWKAP +QE+A CII KDYP+ IV H AS +N Q Y ++ +
Sbjct: 435 LKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAAYARRSGST 494
Query: 382 CIINKD 387
++KD
Sbjct: 495 AEVDKD 500
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 223/481 (46%), Gaps = 87/481 (18%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L +++G P + + + + KLCFE D
Sbjct: 54 PGSSRAGINRIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYD 113
Query: 63 CEGV-----KPYQSFPTGSHPPRYQPCK-TLLNFRDL----SGLPPRPKEDIDFRHVTFG 112
+ + + + + + P TL N D+ G PP +
Sbjct: 114 TDSYYQALDAKVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPS 173
Query: 113 TMSESLQREVSLFQTVP-----KPEQFHKYPEMDFGD----PLIRWLGGETEALIKLNER 163
S L +S V + + E+ +GD + GGE+EAL +L E+
Sbjct: 174 WASSPLPTTISSLPPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREK 233
Query: 164 LSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
++ + + +F+ S + T S LKFGCLS R FY L D + + +
Sbjct: 234 ITNKEWVANFEKP---KGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVGKHT 290
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
P ++ GQL+WR++FYT++ P +DQM++N IC IPW + ++ L+AW+ +
Sbjct: 291 SPP-VSLLGQLLWRDFFYTVAFGTPNFDQMKENRICKQIPWNED-----DELLSAWREAR 344
Query: 282 TGYPFIDAVMRQLRR-----------------------------------LLDCTYCV-- 304
TGYP+IDA+M QLR+ L+D + +
Sbjct: 345 TGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINN 404
Query: 305 -------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
P++FG++ DP+G YIK ++P L+ P +YIYEPW APL V
Sbjct: 405 GNWLWLSCSSFFYQYNRIYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSV 464
Query: 346 QEKANCIISKDYPERIVNHVQASLENKQYLKKEKA-NCIINKDYPERIVNHVQASLENKQ 404
Q KA CII +DYP+ +V H AS E K+ L + A N +N E + +++ LE Q
Sbjct: 465 QTKAKCIIGRDYPKPVVAHDSASKECKKKLAESYALNQKLNGKLGEEDLRNLRRKLEQDQ 524
Query: 405 N 405
+
Sbjct: 525 D 525
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 144/445 (32%), Positives = 207/445 (46%), Gaps = 91/445 (20%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGS---PISIFQKLKRELNFTKLCF 59
PG+ H G R RFLLE L DLD +L+ G +L +++ ++ LK + N KLCF
Sbjct: 61 PGSAHAGVARVRFLLESLLDLDARLRCLGSRLLVLRARDDVSDAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEGV-----KPYQSFPTGSHPPRYQPCK-TLLNFRDL----SGLPPRPKEDIDFRHV 109
E D E K F S + P TL + ++ G PP +
Sbjct: 120 ESDTEPYALARDKRVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSF---VA 176
Query: 110 TFGTMSESLQREVSLFQTVPKPEQFHKYP-----EMDFGDPLIRWL----GGETEALIKL 160
T G + + E S+ + + P E+ +GD ++ GGETEAL ++
Sbjct: 177 TAGEPPKPVMEEYSVLPPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRM 236
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH-E 219
E L Q+ E S + T S LKFGCLSVR FY + D + +
Sbjct: 237 RESL-QDKEWVAKFEKPKGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTH 295
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
+PP ++ GQL+WR++FYT+S P +D ME NPIC IPW E+ AW++
Sbjct: 296 TKPP--VSLAGQLLWRDFFYTVSLGTPNFDHMEGNPICKQIPWR-----ESEELFVAWRD 348
Query: 280 GQTGYPFIDAVMRQLRR-----------------------------------LLDCTYCV 304
G+TGYP+IDA+M QLR+ L+D + +
Sbjct: 349 GRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAI 408
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P++FG++ DP+G YI+ ++P L+ P +YIYEPW APL
Sbjct: 409 NNGNWLWLSCSSFFYQYHRIYSPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPL 468
Query: 344 GVQEKANCIISKDYPERIVNHVQAS 368
VQEKA CI+ KDYP+ +V+H AS
Sbjct: 469 SVQEKARCIVGKDYPKPVVDHEAAS 493
>gi|339649212|gb|AEJ87227.1| putative light-receptive cryptochrome [Platynereis dumerilii]
Length = 365
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 166/322 (51%), Gaps = 44/322 (13%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT + Y R +FLLECL DLD LK HGG+L++V+G + ++L E T++ E D
Sbjct: 6 GTKLVSYPRMKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIEEWGVTRVTCEIDP 65
Query: 64 E-----------------GVK--PYQSF----------PTGSHPPRYQPCKTLLNFRDLS 94
E GVK Y S G PP K DL
Sbjct: 66 EPIWQPRDKAVKDLCATKGVKWFDYNSHLLWDPKAVCDANGGRPPHTY--KLFCQVTDLL 123
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGE 153
G P P D DF HV +S+ + L P ++ PE + + P +W GGE
Sbjct: 124 GKPETPHPDPDFSHVQM-PVSDDFDDKFGL----PTLKELGCEPECEEQEKPFNKWQGGE 178
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL L RL E ++K+G + NQ PDL GPP S S L+FG LS+R+FYW LH++
Sbjct: 179 TGALELLETRLMIERTAYKAGYIMPNQYIPDLVGPPRSMSPHLRFGALSIRKFYWDLHNN 238
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ + G +T QL+WREYFY MS NP +D+ME NPICL IPW + E+
Sbjct: 239 YAEVCGGEWLG--ALTAQLVWREYFYCMSYGNPSFDKMEGNPICLQIPWYKD-----EEA 291
Query: 274 LNAWKNGQTGYPFIDAVMRQLR 295
L WK GQTG+P+IDA MRQLR
Sbjct: 292 LEKWKQGQTGFPWIDACMRQLR 313
>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
Length = 501
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 209/442 (47%), Gaps = 112/442 (25%)
Query: 27 LKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-----------------GVKPY 69
L++ +LF+V+G P +F +L +E ++L FE D E GV+
Sbjct: 3 LRTLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEVV 62
Query: 70 QSFP------------TGSHPP-RYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
G PP Y+ + +++ ++ P RP + + +
Sbjct: 63 VENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEI---PRRPAPSVTRQQME--ACRA 117
Query: 117 SLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVY 176
++R VP E+ + E + G + W GGETEAL +L+ L ++ +
Sbjct: 118 EIKRNHDETYGVPSLEELGFHRE-NKGSAI--WPGGETEALARLDRHLERK-------AW 167
Query: 177 LSNQVSP-----DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ 231
++N P L PT S L+FGCLS + FY+ L + + + + PP ++ GQ
Sbjct: 168 VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVKKNNPPP-LSLFGQ 226
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291
L+WRE+FYT + +NP +DQME NPIC+ IPW + +P K L W G+TG+P+IDA+M
Sbjct: 227 LLWREFFYTAATNNPKFDQMEGNPICVQIPW--DKNP---KALAKWAEGKTGFPWIDAIM 281
Query: 292 RQLRR-----------------------------------LLDCTY-------------- 302
QLR+ LLD +
Sbjct: 282 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSA 341
Query: 303 -------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISK 355
C CPV FGRR DP+G +I+RY+P L+ FP +YIYEPW AP VQ++A CII
Sbjct: 342 FFQQFFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGI 401
Query: 356 DYPERIVNHVQASLENKQYLKK 377
DYP+ IVNH +AS N + +K+
Sbjct: 402 DYPKPIVNHAEASSMNIERMKQ 423
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 145/475 (30%), Positives = 216/475 (45%), Gaps = 110/475 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR +FLLECL DLD LK+ G +L I++G P + + +EL+ KLCFE D
Sbjct: 53 PGSSRAGLNRIKFLLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYD 112
Query: 63 CEGVKPY--------QSFPTGSHPPRYQPCK-TLLN------------------FRDLSG 95
E PY ++F + + P TL N F L+G
Sbjct: 113 TE---PYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSFVKLAG 169
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
PP + G + EV + + + E D P GGE+E
Sbjct: 170 EPPSSLSTVYSSLPPVGNLGSCDISEVPTIRDLGYGDA-----EQDEFSPFK---GGESE 221
Query: 156 ALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
AL +L+E + + + +F+ S L T S LKFGCLS R FY ++ D
Sbjct: 222 ALKRLDECMKDKKWVANFEKP---KGNPSAFLKPATTVLSPYLKFGCLSPRYFYQSIQDV 278
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ ++ + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW + +K
Sbjct: 279 YKSMPKHTLPP-VSLIGQLLWREFFYTAAFGTPNFDRMKGNRICKQIPW-----KDDDKL 332
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L AW+ +TG+P+IDA+M QLR+ L+
Sbjct: 333 LEAWREARTGFPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLI 392
Query: 299 DCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + + P FG++ DP+G YI+ ++P L+ P +YIYE
Sbjct: 393 DSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYE 452
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLE-----NKQYLKKEKANCIINKD 387
PW AP +Q KANCII KDYP +V+H AS E + Y ++ N ++++D
Sbjct: 453 PWTAPKSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAYALNKELNGLVSED 507
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 205/462 (44%), Gaps = 100/462 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G ++G NR+RFLL+ L DLD L+ LF+++G P IF +L +E ++L FE
Sbjct: 41 FAGASNLGVNRWRFLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEF 100
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E GV+ G P Y+ +TL++
Sbjct: 101 DSEPFGKERDAAIKKLACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSM 160
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ PP D +SE+ + + VP E+ E G W G
Sbjct: 161 EPPD-PPLASPDRGMMGKCVTPISENHRDKYG----VPLLEELGFDTE---GLAPAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE+EAL ++ L + +++ + L P S L+FGCLS R FY
Sbjct: 213 GESEALKRMERHLGPDSTAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSL 272
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + PS ++ +++WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 273 SSTKKVKKNMNPS-ISLYDKILWREFFYTAATNNPRFDRMEGNPICIRIPW-----DRNA 326
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 327 EALAKWAEAKTGFPWIDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 386
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR+DP+G +I+RY+P LR FP +YI
Sbjct: 387 LLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYI 446
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP VQ A C I DYP+ +VNH +AS N + +++
Sbjct: 447 YDPWNAPHDVQLAAKCAIGVDYPKPMVNHAEASRLNIERMRQ 488
>gi|390351006|ref|XP_786331.2| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 439
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 187/413 (45%), Gaps = 111/413 (26%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT GYNR+RFL +CL DLD QLK+ GG+LF+ G P IF+++ E L FE D
Sbjct: 44 GTKTSGYNRWRFLHDCLVDLDEQLKAAGGRLFVFHGDPCLIFKEMFLEWGVRYLTFESDP 103
Query: 64 EGVKPYQSF-----------------------------PTGSHPP----RYQPCKTLLNF 90
E + + G PP + C T +
Sbjct: 104 EPIWTERDRRVKALCKEMKVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTEI-- 161
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
G PPRP D V S+ +R +P E E + + W
Sbjct: 162 ----GHPPRPMPDPILTKVNMKIPSDFEER-----CALPSLEVMGVNMECTEQEKKV-WK 211
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET AL R+ E E+FK G L NQ PDL G P S SA L+FGCLSVRRFYW +
Sbjct: 212 GGETRALELFRVRILHEEEAFKGGYCLPNQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKI 271
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
HD ++ + + PSH +T Q+IWREYFYTMS N ++++M++NPICLNI W
Sbjct: 272 HDTYSELKKEVSPSH--LTAQVIWREYFYTMSVGNIHFNKMKENPICLNIEW-----KED 324
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQL-----------------------------------R 295
++ L AW +G+TGYP+IDA M+QL +
Sbjct: 325 DEKLKAWTDGRTGYPWIDACMKQLKYEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDK 384
Query: 296 RLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVP 325
LLD + + CPV +GRR+DP G Y+ R+VP
Sbjct: 385 YLLDADWSICAGNWMWISSSAFEKFLQCPNCFCPVRYGRRMDPTGEYV-RFVP 436
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 214/465 (46%), Gaps = 106/465 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 53 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 112
Query: 63 CE--------GVKPYQS------FPTGSHP---PRY-------QPCKTLLNFRDLSGLPP 98
+ VK Y S F SH P + +P + +F ++G P
Sbjct: 113 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPS 172
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKYPEMDFGDPLIRWLGGETEAL 157
K ++ + + + + +S VP E+ +K E P GGE+EAL
Sbjct: 173 CAKSELVMSYSSLPPIGDIGNLGIS---EVPSLEELGYKDDEQADWTPF---RGGESEAL 226
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALH 211
+L + +S + +++N P L T S LKFGCLS R FY L
Sbjct: 227 KRLTKSISDK-------AWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 279
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW E H
Sbjct: 280 NIYKDVKKHTSPP-VSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW-NEDHA--- 334
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL-----------------------------------RR 296
L AW++G+TGYP+IDA+M QL R
Sbjct: 335 -MLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERL 393
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
L+D + + P++FG++ DPDG YI+ ++P L+ P QYI
Sbjct: 394 LIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYI 453
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
YEPW APL VQ KANCI+ KDYP+ +V H AS E K+ + + A
Sbjct: 454 YEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYA 498
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 214/465 (46%), Gaps = 106/465 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 72 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 131
Query: 63 CE--------GVKPYQS------FPTGSHP---PRY-------QPCKTLLNFRDLSGLPP 98
+ VK Y S F SH P + +P + +F ++G P
Sbjct: 132 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPS 191
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKYPEMDFGDPLIRWLGGETEAL 157
K ++ + + + + +S VP E+ +K E P GGE+EAL
Sbjct: 192 CAKSELVMSYSSLPPIGDIGNLGIS---EVPSLEELGYKDDEQADWTPF---RGGESEAL 245
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALH 211
+L + +S + +++N P L T S LKFGCLS R FY L
Sbjct: 246 KRLTKSISDK-------AWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 298
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW E H
Sbjct: 299 NIYKDVKKHTSPP-VSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW-NEDH---- 352
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL-----------------------------------RR 296
L AW++G+TGYP+IDA+M QL R
Sbjct: 353 AMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERL 412
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
L+D + + P++FG++ DPDG YI+ ++P L+ P QYI
Sbjct: 413 LIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYI 472
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
YEPW APL VQ KANCI+ KDYP+ +V H AS E K+ + + A
Sbjct: 473 YEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYA 517
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 143/455 (31%), Positives = 218/455 (47%), Gaps = 99/455 (21%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+ +G NR+RFL + LA+LD L+S +L++V+G+P+ +F KL + N + L +E D E
Sbjct: 53 LRVGPNRWRFLQQTLANLDENLRSINSRLYVVRGNPVEVFPKLFADWNVSLLTYEHDIEP 112
Query: 66 VKPYQSFPTGSHPPRY------QPCKTLLN----FRDLSGLPPRPKEDIDFRHVTFGTMS 115
+ ++ + T+ + + G PP + R+ T +
Sbjct: 113 YAVKRDSTVEEQARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQ----RYATLASAC 168
Query: 116 ESLQ-----REVSLFQTVPKPEQFHK----------YPEMDFGDPLI---RWLGGETEAL 157
+ Q +++ +T P+ ++ + E+D + + ++ GGE+EAL
Sbjct: 169 KIPQPLPVPQKLPAKETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEAL 228
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT 216
++NE LS++ K + SP+ P T+ S LKFGCLSVR FY + +
Sbjct: 229 RRMNEILSRKAWVCK---FEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETIKG 285
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
+PP ++ GQ++WRE++Y ++A P YD+M N IC I W NK+ YL A
Sbjct: 286 QKHSQPP--VSLIGQVMWREFYYCVAAATPNYDKMVGNGICTQIDW----DTNKD-YLEA 338
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W +G+TGYPFIDA+MRQLR+ LLD
Sbjct: 339 WTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDAD 398
Query: 302 YCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ + PV FG++ DP+G +IK+YVPEL +FP IYEPWK
Sbjct: 399 WALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWK 458
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
A L Q+K CII KDYP RIV H S N Q +
Sbjct: 459 ANLETQKKLGCIIGKDYPMRIVVHEDISKVNIQRM 493
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 146/482 (30%), Positives = 212/482 (43%), Gaps = 120/482 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP IG NR+RFL+E L DLD LK +LF+V+GSP + KL ++ T+L FE
Sbjct: 67 FPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEV 126
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV------TFGTMS 115
D E PY K ++ G+ PK ++ G
Sbjct: 127 DTE---PYSQ----------SRDKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTP 173
Query: 116 ESLQREVSLFQTVPKPEQFHKYP----------------EMDFGDPLIRWLG-------- 151
+ R S+ + + P++ P E FG P + LG
Sbjct: 174 MTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGP 233
Query: 152 -----GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRR 205
GE EAL +L+E + + K + + SP+ P T+ S ++FGCLS R
Sbjct: 234 HLFPGGEQEALRRLDEHMERTNWVCK---FEKPKTSPNSLIPSTTVLSPYVRFGCLSARI 290
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
F+W L D + PP ++ GQL+WRE+FYT + P +++ME N C+ + W
Sbjct: 291 FWWRLADVYRGKTHSDPP--VSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDW--- 345
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------------------------- 296
N ++L AW+ +TG+PFIDA+M QLR+
Sbjct: 346 --DNNPEHLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQ 403
Query: 297 ------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
LLD + + P+ FG++ D G YIK+Y+P L++
Sbjct: 404 KVFEELLLDSDWSLNAGNWQWLSASTFFHQYFRVYSPIAFGKKTDKHGDYIKKYLPVLKK 463
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN-----KQYLKKEKANCII 384
FP +YIYEPWKAP VQE+A CI+ KDYP IV+H +N Y K+ + I
Sbjct: 464 FPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVVHKKNILRMKAAYAKRSPEDKTI 523
Query: 385 NK 386
NK
Sbjct: 524 NK 525
>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
Length = 507
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 211/456 (46%), Gaps = 108/456 (23%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE---- 64
G N +RF+++CL +LD +L+ +G +LF+V+GS F++ R+ T+L + D E
Sbjct: 54 GANWWRFVIQCLEELDTRLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYR 113
Query: 65 -------------GVKPYQSFP------------TGSHPPRYQPCKTLLNFRDLSGLPPR 99
GV+ G PP + L + G PP+
Sbjct: 114 IRDVAVRKIASDMGVEVVTHVAHTLYDIDRTVERNGGTPP--LTYRKFLKVYNEMGKPPK 171
Query: 100 PKEDIDFRHVTFGTMS-ESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
KE H T+ E+LQ + T+ + +P +++GGETEAL
Sbjct: 172 EKETATTEHFANCTLPPEALQDKKFDMVTLEELGMRCDFPA--------KFVGGETEALR 223
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTI 217
+L + L + K + + SP+ P T+ S + GCLS R FY L ++
Sbjct: 224 RLEKSLEDKDWVLK---FEKPKTSPNSLLPSTTVLSPYITVGCLSARLFYHQLDKIYSKA 280
Query: 218 -HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
+ +PP ++ GQLIWRE+FYT +AH P ++QME N +CL IPW +++L
Sbjct: 281 KNHSQPP--VSLHGQLIWREFFYTAAAHTPNFNQMEGNRVCLQIPW-----NKNDEHLTR 333
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W+N QTG+P+IDA M QLR+ LLD
Sbjct: 334 WRNAQTGFPWIDAAMTQLRKEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDAD 393
Query: 302 YCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ + P+ FG++ DP G +I+ Y+P L+ FP +YIYEPWK
Sbjct: 394 WSLNAGNWMWLSASAFFHQYFRVYSPIVFGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWK 453
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
AP VQEKA CI+ KDYP IV+H +AS N ++
Sbjct: 454 APRNVQEKAGCIVGKDYPRPIVDHKEASQRNLDIMR 489
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 226/494 (45%), Gaps = 113/494 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR +FLLE LADLD LK G +L +++G P + +E + ++CFE D
Sbjct: 53 PGSTRAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYD 112
Query: 63 CE--------GVKPYQS------FPTGSH----PPRY------QPCKTLLNFRDLSGLPP 98
+ VK + S F SH P +P T +F ++G P
Sbjct: 113 TDPYYQALDVKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVAGEPS 172
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD----PLIRWLGGET 154
+ + + + E+S TV E+ +GD + GGE+
Sbjct: 173 WASSPLSISISSLPPVGDVGSCEISEVPTVE---------ELGYGDVEQDEWTPFRGGES 223
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPD-----LTGPPTSQ-SAALKFGCLSVRRFYW 208
EAL L E S K +++N P P T+ S LKFGCLS R F+
Sbjct: 224 EALKSLRE-------SIKDKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQ 276
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + + + P ++ GQL+WR++FYT++ P +DQM+ N IC IPW ++
Sbjct: 277 CLQDVYRNVKKHTSPP-VSLVGQLLWRDFFYTVAFGTPNFDQMKDNRICKQIPWNEDT-- 333
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L AW++ +TGYP+IDA+M QLR+
Sbjct: 334 ---ELLAAWRDARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVF 390
Query: 297 ---LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
L+D + + P++FG++ DP+G YI+ ++P L+ P
Sbjct: 391 ERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPVLKDMPK 450
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA-NCIINKDYPER 391
++IYEPW APL VQ KA CII +DYP+ +V+H AS E K+ L + A N +N E
Sbjct: 451 EFIYEPWTAPLSVQTKAKCIIGRDYPKPVVSHDSASKECKRKLAEAYALNQKLNGQLTEE 510
Query: 392 IVNHVQASLENKQN 405
+ +++ L+ Q+
Sbjct: 511 DLGNLKRKLQQDQD 524
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 210/473 (44%), Gaps = 114/473 (24%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +IG N +RFLL+ L DLD L+ +LF+++G P +F +L RE T+L
Sbjct: 61 ASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRL------ 114
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV------TFGTMSES 117
+F S P + + +G+ H+ GT +
Sbjct: 115 -------TFEEDSEPFGKERDSAICMLAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLT 167
Query: 118 LQREVSLFQTV-----------PKPEQFHKYPEMD-----FGDPLIR------------- 148
++ +S+ + + P ++ P D +G P +
Sbjct: 168 YKKFLSVIEGIAPPDPPVPHIDPSAQELGHTPLSDNHDELYGVPTMEELGLETSKLFVEV 227
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGETEAL +L+ L ++ I SF S L P+ S L+FGCLS R F
Sbjct: 228 WHGGETEALKRLDRHLERKAWIASFGK----PKVTSDSLMASPSGVSPYLRFGCLSPRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + G PP+ ++ GQL+WRE+F+ +S +NP +D+ME NPICL I W +
Sbjct: 284 YYRLMDLYRKVKGGPPPT--SLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDK 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+ L W + QTG+P+IDA+M QL++
Sbjct: 342 QVASD--LQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAIASFLTRGCLWISWEAGMK 399
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + CPV F + LD G YI++Y+P L+ F
Sbjct: 400 VFAEHLLDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYIRKYLPVLKGF 459
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
P +YI+EPWKAPL VQ+ A CII K YP +V+H +A +N + + + I
Sbjct: 460 PARYIHEPWKAPLNVQKMAKCIIGKSYPSPMVDHEKAVSKNMEEMTSVYKSVI 512
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 213/474 (44%), Gaps = 116/474 (24%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
M +G NR+RFL + L DLD+QL+ G +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSWRVELLTFETDIEP 113
Query: 65 ----------------GVKPYQSFPTGSHPPRYQPCKTL----------------LNFRD 92
GVK + P K L L
Sbjct: 114 YSLARDSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPT 173
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGG 152
+ LP + KE + + ++ + S P EQ K PE D G PL ++ GG
Sbjct: 174 VLDLPEKLKEKVQ-------PPKDDIEEKDSEAYDCPTMEQLVKRPE-DLG-PL-KFPGG 223
Query: 153 ETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
ETEAL ++ E L E + F+ N + P T S LKFGCLS R F+ L
Sbjct: 224 ETEALRRMEESLKDELWVARFEKPNTAPNSLEPSTT----VLSPYLKFGCLSSRLFHQRL 279
Query: 211 HDHFN-TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ +PP ++ GQ++WRE++YT++A P +D+M N CL IPW E HP+
Sbjct: 280 KEILKRQTKHSQPP--VSLIGQMMWREFYYTVAAAEPNFDRMLGNVYCLQIPW--EEHPD 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
+L AW GQTGYPFIDA+MRQLR+
Sbjct: 336 ---HLKAWTYGQTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFE 392
Query: 297 --LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + + PV FG++ DP G YI++YVPEL ++P
Sbjct: 393 QLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGNYIRKYVPELAKYPAG 452
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A +N++
Sbjct: 453 CIYEPWKASLSDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAAYKVNRE 503
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 211/482 (43%), Gaps = 120/482 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP IG NR+RFL+E L DLD LK +LF+V+GSP + KL ++ T+L FE
Sbjct: 41 FPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEV 100
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV------TFGTMS 115
D +PY K ++ G+ PK ++ G
Sbjct: 101 D---TEPYSQ----------SRDKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTP 147
Query: 116 ESLQREVSLFQTVPKPEQFHKYP----------------EMDFGDPLIRWLG-------- 151
+ R S+ + + P++ P E FG P + LG
Sbjct: 148 MTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGP 207
Query: 152 -----GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRR 205
GE EAL +L+E + + K + + SP+ P T+ S ++FGCLS R
Sbjct: 208 HLFPGGEQEALRRLDEHMERTNWVCK---FEKPKTSPNSLIPSTTVLSPYVRFGCLSART 264
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
F+W L D + PP ++ GQL+WRE+FYT + P +++ME N C+ + W
Sbjct: 265 FWWRLADVYRGKTHSDPP--VSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDW--- 319
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------------------------- 296
N ++L AW+ +TG+PFID +M QLR+
Sbjct: 320 --DNNPEHLAAWREARTGFPFIDTIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQ 377
Query: 297 ------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
LLD + + P+ FG++ D G YIK+Y+P L++
Sbjct: 378 KVFEELLLDSDWSLNAGNWQWLSASTFFHQYFRVYSPIAFGKKTDKHGDYIKKYLPVLKK 437
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN-----KQYLKKEKANCII 384
FP +YIYEPWKAP VQE+A CI+ KDYP IV+H +N Y K+ + I
Sbjct: 438 FPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVVHKKNILRMKAAYAKRSPEDKTI 497
Query: 385 NK 386
NK
Sbjct: 498 NK 499
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 210/453 (46%), Gaps = 123/453 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR RFL+ L DLD L++ +LF+V+G P +F KL + TKL +E D E
Sbjct: 46 VGINRCRFLIGALRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTE--- 102
Query: 68 PY-----QSFPTGSHPPR----YQPCKTLLN----FRDLSGLPPRPKEDIDFRHVTFGTM 114
PY ++ T + Y+ TL + + +G PP +T+ +M
Sbjct: 103 PYSLSRDRTVTTLAEESGVQVVYRVSHTLYDTERVLEENNGKPP----------LTYNSM 152
Query: 115 SESLQR-----------EVSLFQTVPKP-----EQFHKYPEMD------FGDPLIRWLGG 152
+++ + + V P E+ + P ++ G P ++ GG
Sbjct: 153 QAIVKKLGPPKRPISAPSMDDLKGVSTPCLEDHEKKYGIPTLEDLGHDPAGLPEEKFPGG 212
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSN----QVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
E EAL +L +++ K ++ N Q SP+ P T+ S + FGCLS R F+
Sbjct: 213 EQEALRRLEDQM-------KKTSWVCNFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFW 265
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
W L D ++ PP ++ GQL+WRE+FYT S P +++M NP+C + W +S
Sbjct: 266 WRLSDVYSGKKHSAPP--VSLHGQLLWREFFYTASVGIPNFNKMADNPVCTQVDWDTDS- 322
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
+YL AW+ +TG+PFIDA+M QLR+
Sbjct: 323 ----EYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKV 378
Query: 297 ----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + + PV FG++ D +G YIK+Y+P L++FP
Sbjct: 379 FEELLLDGDWALNAGNWQWLSASAFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPHLKKFP 438
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
QYIYEPWKAP +Q+ A CII KDYP IV H
Sbjct: 439 AQYIYEPWKAPQSIQKAAGCIIGKDYPHPIVKH 471
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 204/456 (44%), Gaps = 115/456 (25%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
M +G NR+RFL + L+DLD+QL++ +LF+V+G P+ IF L L +E D E
Sbjct: 54 MQVGANRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEP 113
Query: 65 ----------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTM 114
+ Q +H L+ R+L G PP + F +
Sbjct: 114 YAVLRDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNL-GKPP-------ITYQKFLGI 165
Query: 115 SESLQREVSL-----------------FQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
E L+ L P EQ K PE D G + ++ GGE+EAL
Sbjct: 166 VEKLKLPKVLNKPKKLPDGMQPLADSDIYDYPTLEQLVKRPE-DLG--INKFPGGESEAL 222
Query: 158 IKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
++ L+ E + F+ N + P T S LKFGCLS R F H+
Sbjct: 223 RRMEASLADEQWVAKFEKPKTAPNSLEPSTT----VLSPYLKFGCLSARLF----HERLQ 274
Query: 216 TIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
I R P H ++ GQL+WRE++YT++A P +D+M N CL IPW + P
Sbjct: 275 EIL-ARQPKHSKPPVSLVGQLLWREFYYTVAAAEPNFDRMLGNAYCLQIPW--QEQP--- 328
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
++L AW +G+TGYPFIDA+MRQLR+
Sbjct: 329 EHLEAWAHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQL 388
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + + PV FG++ DP G YIK+YVPEL ++P + I
Sbjct: 389 LLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPKGDYIKKYVPELAKYPAKCI 448
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
YEPWKA LG Q C++ DYP RIVNH EN
Sbjct: 449 YEPWKATLGEQRDYGCVLGSDYPHRIVNHDVVHKEN 484
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 208/459 (45%), Gaps = 101/459 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G+ G NR RFLLE L DLD LK G +L ++ G P + + +E N KLCFE D
Sbjct: 54 GSSRAGLNRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDT 113
Query: 64 EGVKPY--------QSFPTGSHPPRYQPCK-TLLN------------------FRDLSGL 96
+ PY Q+ + + + P TL N F L+G
Sbjct: 114 D---PYYQALDIRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFLKLAGE 170
Query: 97 PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
P + + + ++ + E+S T+ Y +M D + GGETEA
Sbjct: 171 PSWACAPLSTTVSSLPPVGDTGRSEISDVPTIKD----LGYEDMA-KDDWTPFRGGETEA 225
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSPD----LTGPPTSQSAALKFGCLSVRRFYWALHD 212
L +L E +S I S + V + D L T S LKFGCLS R FY + +
Sbjct: 226 LKRLKESMSFLIGSLQDWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQE 285
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+ + +G ++ GQL+WRE+FYT + P +D+M+ N IC IPW + +
Sbjct: 286 IYKNV-KGHTSPPVSLVGQLLWREFFYTAAFGTPNFDRMKDNKICKQIPW-----NDDNE 339
Query: 273 YLNAWKNGQTGYPFIDAVMRQLRR-----------------------------------L 297
L AW++ +TG+P+IDA+M QLR+ L
Sbjct: 340 LLAAWRDARTGFPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLL 399
Query: 298 LDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
+D + + P+ FG++ DP+G +I+ ++P L+ P QYIY
Sbjct: 400 IDSDWAINNANWLWLSCSSFFYQYNRVYSPITFGKKYDPNGDFIRHFLPVLKDMPKQYIY 459
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
EPW APL +Q+KA CII +DYP+ +V+H A E ++ +
Sbjct: 460 EPWTAPLSIQKKAKCIIGEDYPKPVVSHDIAIKECRKKM 498
>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
Length = 551
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 217/471 (46%), Gaps = 95/471 (20%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEGV-----KPYQSFPTGSHPPRYQPCK-TLLNFRDL----SGLPPRPKEDIDFRH 108
FE D E K F S + P TL + ++ G PP +
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF---V 179
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYP-----EMDFGD----PLIRWLGGETEALIK 159
G E + E S V ++ P E+ +GD L + GGETEAL +
Sbjct: 180 AIAGEPPEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKR 239
Query: 160 LNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF-NT 216
+ E L + + F+ S L T S LKFGCLS R FY + D + +T
Sbjct: 240 MRESLHDKEWVAKFEKP---KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRST 296
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
PP ++TGQL+WR++FYT++ P +DQM+ N IC IPW E+ A
Sbjct: 297 KKHTNPP--VSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWT-----ENEELFPA 349
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W++G+TGYP+IDA+M QLR+ L+D
Sbjct: 350 WRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSD 409
Query: 302 YCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ + P +FG++ DP+G YI+ ++P L+ P +YIYEPW
Sbjct: 410 WAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWT 469
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPER 391
APL +Q+KANCII KDYP+ +V+H AS E K+ + + A+ ++ D P++
Sbjct: 470 APLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDK 520
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 150/483 (31%), Positives = 216/483 (44%), Gaps = 134/483 (27%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
M +G NR+RFL + L DLD++LK +L+IV+G P+ +F +L N L FE D E
Sbjct: 54 MQVGANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEP 113
Query: 65 ----------------GVKP-------------YQSFPTGSHPPRYQPCKTLLNFRDL-- 93
GVK + G P YQ +++ L
Sbjct: 114 YALQRDTTVQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPK 173
Query: 94 -----SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF--HKYPEMDFGDPL 146
GLP K D F + + +L Q V +P++ +K+P
Sbjct: 174 VLAVPEGLPDGIKPIAD----EFEAVDSCVYDCPTLDQLVKRPQELGVNKFP-------- 221
Query: 147 IRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
GGETEAL ++ L E + +F+ N + P T S LKFGCLS R
Sbjct: 222 ----GGETEALRRMEASLIDENWVAAFEKPNTAPNSLEPSTT----VLSPYLKFGCLSAR 273
Query: 205 RFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
LH+ I R P H ++ GQL+WRE++YT++A +P +D+M N CL I
Sbjct: 274 ----LLHERLKEILV-RKPKHSKPPVSLVGQLLWREFYYTVAAADPNFDRMLGNAYCLQI 328
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------ 296
PW + P+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 329 PW--QKQPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWIS 383
Query: 297 -----------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYV 324
LLD + + PV FG++ DP G YI++YV
Sbjct: 384 WEDGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPTGAYIRKYV 443
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCII 384
PEL ++P IYEPWKA L Q + C++ DYP RIVNH + +K+ +K+ A +
Sbjct: 444 PELAKYPAGCIYEPWKATLSAQREYGCVLGVDYPHRIVNH---DIVHKENIKRMSAAYKV 500
Query: 385 NKD 387
N++
Sbjct: 501 NRE 503
>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
gi|306756329|sp|Q0E2Y1.1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
Length = 551
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 217/471 (46%), Gaps = 95/471 (20%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEGV-----KPYQSFPTGSHPPRYQPCK-TLLNFRDL----SGLPPRPKEDIDFRH 108
FE D E K F S + P TL + ++ G PP +
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF---V 179
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYP-----EMDFGD----PLIRWLGGETEALIK 159
G E + E S V ++ P E+ +GD L + GGETEAL +
Sbjct: 180 AIAGEPPEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKR 239
Query: 160 LNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF-NT 216
+ E L + + F+ S L T S LKFGCLS R FY + D + +T
Sbjct: 240 MRESLHDKEWVAKFEKP---KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRST 296
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
PP ++TGQL+WR++FYT++ P +DQM+ N IC IPW E+ A
Sbjct: 297 KKHTNPP--VSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWT-----ENEELFPA 349
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W++G+TGYP+IDA+M QLR+ L+D
Sbjct: 350 WRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSD 409
Query: 302 YCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ + P +FG++ DP+G YI+ ++P L+ P +YIYEPW
Sbjct: 410 WAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWT 469
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPER 391
APL +Q+KANCII KDYP+ +V+H AS E K+ + + A+ ++ D P++
Sbjct: 470 APLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDK 520
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/452 (30%), Positives = 209/452 (46%), Gaps = 97/452 (21%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR+RFL+ L DLD L+ +LF+V+G P + KL + T+L +E D E
Sbjct: 47 VGINRWRFLIGALKDLDGSLRKLNSRLFVVRGKPEDVLPKLFTKWKVTRLAYEYDTEPYS 106
Query: 68 PYQSFPTGSHPPR------YQPCKTLLNFRDL----SGLPPRPKEDIDFRHVTFGTMSES 117
+ S Y+ TL N + +G PP + T G
Sbjct: 107 LQRDSKVTSLAKEHGVEVIYKVSHTLYNIDRIIEENNGKPPLTYTKLQAIVKTIGPPKRP 166
Query: 118 LQR-EVSLFQTVPKPEQFHKYPEMDFGDPLIRWL-------------GGETEALIKLNER 163
+ + + V P + E ++G P + L GGE EAL +L+E
Sbjct: 167 IPAPTMDDMKDVKTPSSENH--EKEYGIPTLEELGLDTAPLGEDLFPGGEQEALRRLDEH 224
Query: 164 L--SQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ ++ + SF+ Q SP+ P T+ S + FGCLSVR F+W L + +
Sbjct: 225 MKRTKWVCSFE-----KPQTSPNSLSPSTTVLSPYVTFGCLSVRTFWWRLTEVYRGNKHS 279
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
PP ++ GQL+WRE+FYT S P +++ME N +C + W +++P+ YL AW+
Sbjct: 280 DPP--VSLHGQLLWREFFYTASLGIPNFNKMEGNSVCTQVDW--DTNPD---YLAAWREA 332
Query: 281 QTGYPFIDAVMRQLRR-----------------------------------LLDCTYCV- 304
+TGYPFIDA+M QLR+ LLD + +
Sbjct: 333 RTGYPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEQLLLDGDWALN 392
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
PV FG++ D +G YI++Y+P L++FP +YIYEPWKAP
Sbjct: 393 AGNWQWLSASTFFHQYFRVYSPVAFGKKTDKNGDYIRKYLPLLKKFPAEYIYEPWKAPRS 452
Query: 345 VQEKANCIISKDYPERIVNHVQASLENKQYLK 376
+Q+ A CI+ KDYP IV H S +N Q +K
Sbjct: 453 IQQAAGCIVGKDYPHPIVQHEVISKKNIQRMK 484
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 203/449 (45%), Gaps = 92/449 (20%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
+G NR RFLLE L ++D L+ G +L ++QG P + +++ +LCFE+D E
Sbjct: 45 RVGVNRMRFLLESLGEIDGNLRRLGSRLIVLQGRPQEVLERVLSRWQIGRLCFERDTEPY 104
Query: 67 KPYQSFPTGSHPPRYQP---CKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESL---QR 120
+ S R T D L + + + FG ++ L
Sbjct: 105 ARRRDEAIRSMAERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDA 164
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG---------------GETEALIKLNERLS 165
V+ +P P + + D+G P + LG GE E L +L+ LS
Sbjct: 165 PVASPSHLPPPGEL----DADYGIPTLAELGYPDPECPSRGIIPPGGEGEGLRRLHVYLS 220
Query: 166 QEIESFKSGVYLSNQVSPDLTGPP--TSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
+ +S + P PP T+ A LKFGCLS R FY + + + E P
Sbjct: 221 ---DRQRSAGFAKPDTDPTAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVGEHTEP 277
Query: 224 SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
++ GQ++WRE+FYT+ P YD++E NP+C IPW + +YL AW +TG
Sbjct: 278 P-MSLIGQILWREFFYTVGYATPNYDRIEGNPVCRQIPW-----DDNPEYLAAWSEARTG 331
Query: 284 YPFIDAVMRQLRR-----------------------------------LLDCTYCV---- 304
+P+IDA M QLR LLD + +
Sbjct: 332 FPWIDAAMTQLRTEGWLHHLSRHAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASN 391
Query: 305 -----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
P++F ++ DP+G Y++RY+P+L + P ++IYEPW+APL VQ+
Sbjct: 392 WMWLSASAFFNAYYRVYSPISFAKKYDPEGRYVRRYLPKLARVPAEFIYEPWRAPLLVQK 451
Query: 348 KANCIISKDYPERIVNHVQASLENKQYLK 376
+A C++ +DYP+ IV+H QA N + ++
Sbjct: 452 QAGCVVGRDYPDPIVDHEQAKACNLERMR 480
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 213/471 (45%), Gaps = 110/471 (23%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
M +G NR+RFL + L DLD QL+ G +LF+V+G P +F ++ + L FE D E
Sbjct: 54 MQVGANRWRFLQQALEDLDNQLRKLGSRLFVVRGKPAEVFPRIFKSWRVEILTFETDIEP 113
Query: 65 ----------------GVKPYQSFPTGSHPPRYQPCKTL----LNFRDLSG------LPP 98
GVK + P K L + ++ G LP
Sbjct: 114 YSLSRDASVQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPK 173
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
+++T E +++E S P EQ K PE + G ++ GGETEAL
Sbjct: 174 VLGAPEKLQNITTPPNDE-VEQEDSAAYDCPTMEQLVKRPE-ELGPN--KFPGGETEALR 229
Query: 159 KLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
++ + L E + F+ N + P T S LKFGCLS R F L +
Sbjct: 230 RMEDSLKDELWVARFEKPNTAPNSLEPSTT----VLSPYLKFGCLSARLFNQKLKEIIK- 284
Query: 217 IHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
R P H ++ GQL+WRE++YT++A P +D+M N C+ IPW + HPN
Sbjct: 285 ----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMMGNVYCMQIPW--QEHPN--- 335
Query: 273 YLNAWKNGQTGYPFIDAVMRQLRR-----------------------------------L 297
+L AW +G+TGYPFIDA+MRQLR+ L
Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395
Query: 298 LDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
LD + + PV FG++ DP G YI++YVPEL ++P IY
Sbjct: 396 LDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIY 455
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
EPWKA L Q C++ DYP RIV H + +K+ +K+ A +N++
Sbjct: 456 EPWKASLADQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAAYKVNRE 503
>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
Length = 551
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 217/471 (46%), Gaps = 95/471 (20%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEGV-----KPYQSFPTGSHPPRYQPCK-TLLNFRDL----SGLPPRPKEDIDFRH 108
FE D E K F S + P TL + ++ G PP +
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF---V 179
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYP-----EMDFGD----PLIRWLGGETEALIK 159
G E + E S V ++ P E+ +GD L + GGETEAL +
Sbjct: 180 AIAGEPPEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSPFRGGETEALKR 239
Query: 160 LNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF-NT 216
+ E L + + F+ S L T S LKFGCLS R FY + D + +T
Sbjct: 240 MRESLHDKEWVAKFEKP---KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRST 296
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
PP ++TGQL+WR++FYT++ P +DQM+ N IC IPW E+ A
Sbjct: 297 KKHTNPP--VSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWT-----ENEELFPA 349
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W++G+TGYP+IDA+M QLR+ L+D
Sbjct: 350 WRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSD 409
Query: 302 YCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ + P +FG++ DP+G YI+ ++P L+ P +YIYEPW
Sbjct: 410 WAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWT 469
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPER 391
APL +Q+KANCII KDYP+ +V+H AS E K+ + + A+ ++ D P++
Sbjct: 470 APLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDK 520
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 149/480 (31%), Positives = 208/480 (43%), Gaps = 138/480 (28%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ +G NR RFLL+ L DLD L+ HG +L ++ G+P ++ +L + +LCFE D
Sbjct: 51 PGSKLVGVNRIRFLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFD 110
Query: 63 CEGVKPY-----------------QSFPTGSHPPRYQPCKTLLN-----------FRDLS 94
E PY + F SH + P T+ F L+
Sbjct: 111 TE---PYAQDRDADIKKLATKYGVEVFSPVSHT-LFNPIDTIRKNGGQTPLTYQAFLKLT 166
Query: 95 GLPP----------RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD 144
G PP P ED++ HV E L V E+F +P
Sbjct: 167 GKPPLPVTAPLQIPSPPEDLNDVHVVPVPKLEDLG-------YVNLDEEFSPHP------ 213
Query: 145 PLIRWLGGETEALIKLNERLSQ-----EIESFKSGVYLSNQVSPDLTGPPTSQS------ 193
GGETEAL +L++ L + E K + + + P S
Sbjct: 214 ------GGETEALRRLDKSLVNQKWVCDFEKPKGNPTAFIEPATTVLSPYLKASNLGFLL 267
Query: 194 AALKFGCLSVRRFYWALHDHF--NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
+ FGCLS R F+ L + N H P S + GQL+WRE+FYT P +D+M
Sbjct: 268 KPMLFGCLSCRLFHQRLLAVYSQNKKHSSPPVS---LEGQLLWREFFYTAGYGTPNFDRM 324
Query: 252 EKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------- 296
NPIC IPW + ++ L AW++GQTGYP+IDA M QLR+
Sbjct: 325 LGNPICKQIPW-----KDDDRLLAAWRDGQTGYPWIDAAMVQLRKWGWMHHLARHAVACF 379
Query: 297 --------------------LLDCTYCV---------------------CPVNFGRRLDP 315
L+D + + PV FG++ DP
Sbjct: 380 LTRGDMFVYWEKGRDVFDRLLIDSDWAINNGNWLWLSASAFFHQYHRIYSPVTFGKKYDP 439
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
DG+Y+K ++P L+ P YIYEPW APL VQ+KANCII DYP IV+H A+ E ++ +
Sbjct: 440 DGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQKKANCIIGVDYPRPIVDHSIANKECREKM 499
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 212/464 (45%), Gaps = 103/464 (22%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR RFL+ L DLD L+ +LF+V+G P +F KL + TKL +E D E +
Sbjct: 46 VGVNRCRFLIGALKDLDLSLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTEPLS 105
Query: 68 PYQSFPTGSHPPRYQ---PCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR---- 120
+ + CK D++ + +E+ +T+ +M +++
Sbjct: 106 LSRDKTVTRLAEEHGIDVVCKVSHTLFDINRII---EENNGKTPLTYKSMQAIVKKLGPP 162
Query: 121 -------EVSLFQTVPKP-----EQFHKYPEM-DFGDPLI-----RWLGGETEALIKLNE 162
+ + V P E+ ++ P + DFG L ++ GGE EAL +L E
Sbjct: 163 KRPLSAPSMEDLKDVNTPCSESHEKKYRIPTLEDFGHNLADLPEEQFPGGEQEALRRLEE 222
Query: 163 RLSQEIESFKSGVYLSN----QVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTI 217
+ K ++ N + SP+ P T+ S + FGCLSVR F+W L D +
Sbjct: 223 HM-------KRTAWVCNFEKPKTSPNSLSPSTTVLSPYVTFGCLSVRTFWWRLSDVYEGK 275
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
PP ++ GQL+WRE+FYT S +++M NP+C + W S +YL AW
Sbjct: 276 KHSAPP--VSLHGQLLWREFFYTASVGISNFNKMVDNPVCTQVDWDINS-----EYLAAW 328
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
+ +TG+PFIDAVM QLR+ LLD +
Sbjct: 329 REARTGFPFIDAVMTQLRQQGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDW 388
Query: 303 CV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
+ PV FG++ D +G YIK+++P L++FP +YI+EPWKA
Sbjct: 389 ALNAGNWQWLSASAFFHQFFRVYSPVAFGKKTDKNGDYIKKFLPHLKKFPAEYIFEPWKA 448
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIIN 385
P VQ+ A CI+ KDYP IV H S +N Q +K A N
Sbjct: 449 PQSVQQAAGCIVGKDYPHPIVQHEVVSKKNIQRMKAAYAKRSAN 492
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 217/470 (46%), Gaps = 108/470 (22%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSWRVEILSFETDIEP 113
Query: 63 --------------CEGVK--PYQSFPT-----------GSHPPRYQPCKTLLNFRDLSG 95
EGVK Y S G P YQ ++ L
Sbjct: 114 YSMTRDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPK 173
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
+ P++ ++T E Q +++ + P EQ K PE + G ++ GGETE
Sbjct: 174 VLGSPEK---LTNITSPPKDEVEQEDLAAYD-CPTMEQLVKRPE-ELGPN--KFPGGETE 226
Query: 156 ALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHF 214
AL ++ + L EI + + +P+ P T+ S LKFGCLS R FY L +
Sbjct: 227 ALRRMEDSLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTEII 283
Query: 215 NTIHE-GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ +PP ++ GQL+WRE++YT++A P +D+M N C+ IPW + HP+ +
Sbjct: 284 KRQSKHSQPP--VSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPW--QEHPD---H 336
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L AW +G+TGYPFIDA+MRQLR+ LL
Sbjct: 337 LEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLL 396
Query: 299 DCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + + PV FG++ DP G YI++YVPEL ++P IYE
Sbjct: 397 DQDWALNAGNWMWLSASAFFYQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYE 456
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
PWKA L Q C++ DYP RIV H + +K +K+ A +N++
Sbjct: 457 PWKASLADQRAYGCVLGTDYPHRIVKH---EVVHKDNIKRMGAAYKVNRE 503
>gi|395543767|ref|XP_003775403.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Sarcophilus
harrisii]
Length = 597
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 200/431 (46%), Gaps = 87/431 (20%)
Query: 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRY 81
DLD L+ +LF+V+G P +F +L + Q+ G++ +
Sbjct: 91 DLDISLRKLNSRLFVVRGQPTDVFPRLFKVRGAAAATEGQEPSGLRGV-VVGASRLALLH 149
Query: 82 QPCKTLLNFR---DLSGLPP-----RPKEDIDFRHVTFGTMSESLQREVSLFQT------ 127
+ C+ R +L+G P R + I + +S ++++ Q
Sbjct: 150 EXCRVSFGIRRIIELNGQKPPLTYKRFQAIISRMELPRKPVSGVTRQQMERCQAEIREDH 209
Query: 128 -----VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
VP E+ +P G + W GGETEAL +L++ L E +++ + +
Sbjct: 210 DEAYGVPSLEEL-GFPTDGLGPAV--WQGGETEALARLDKHL--ERKAWVANYERPRMNA 264
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
L PT S L+FGCLS R FY+ L + + + P ++ GQL+WRE+FYT +
Sbjct: 265 TSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVKRNNTPP-LSLYGQLLWREFFYTAA 323
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------ 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 324 TNNPKFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHH 378
Query: 297 -----------------------------LLDCTY---------------------CVCP 306
LLD + C CP
Sbjct: 379 LARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCP 438
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V FGRR DP G Y++RY+P+L+ FP +YIYEPW AP VQ+ A CII DYP+ +VNH +
Sbjct: 439 VGFGRRTDPSGDYVRRYLPQLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAE 498
Query: 367 ASLENKQYLKK 377
S N + +K+
Sbjct: 499 TSRLNIERMKQ 509
>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
Length = 560
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 222/481 (46%), Gaps = 106/481 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE-- 116
FE D E PY + + + F +S P E I+ +FG
Sbjct: 123 FESDTE---PY-ALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGG 178
Query: 117 ----SLQREVSLFQTVPKP--EQFHKYP-----------------EMDFGD----PLIRW 149
+ Q V++ P+P E++ + P E+ +GD L +
Sbjct: 179 RPPMTYQSFVAIAGEPPEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLF 238
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGETEAL ++ E L + + F+ S L T S LKFGCLS R FY
Sbjct: 239 RGGETEALKRMRESLHDKEWVAKFEKP---KGDPSAFLKPATTVLSPYLKFGCLSSRYFY 295
Query: 208 WALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+ D + +T PP ++TGQL+WR++FYT++ P +DQM+ N IC IPW
Sbjct: 296 HCIQDIYRSTKKHTNPP--VSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWT--- 350
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
E+ AW++G+TGYP+IDA+M QLR+
Sbjct: 351 --ENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRD 408
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
L+D + + P +FG++ DP+G YI+ ++P L+
Sbjct: 409 VFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDM 468
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPE 390
P +YIYEPW APL +Q+KANCII KDYP+ +V+H AS E K+ + + A+ ++ D P+
Sbjct: 469 PKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPD 528
Query: 391 R 391
+
Sbjct: 529 K 529
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 197/463 (42%), Gaps = 101/463 (21%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL------------- 48
F G ++G NR+RFLL+ L DLD L+ LF+++G P IF +L
Sbjct: 41 FAGASNLGVNRWRFLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEF 100
Query: 49 -------KRELNFTKLCFEQDCEGVKPYQ----------SFPTGSHPPRYQPCKTLLNFR 91
+R+ KL E E + G P Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G + VP E+ E G W G
Sbjct: 158 --SSMEPPDPPLSSPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTE---GLAPAVWPG 212
Query: 152 GETEALIKLNERLS-QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GE+EAL ++ L +++ + L P S L+FGCLS R FY L
Sbjct: 213 GESEALKRMERHLGPDSTVAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKL 272
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ + + PS ++ +++WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 273 TQLYKKVKKNMNPS-ISLYDKILWREFFYTAATNNPRFDRMEGNPICIRIPW-----DRN 326
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------------- 296
+ L W +TG+P+IDA+M QLR+
Sbjct: 327 AEALAKWAEAKTGFPWIDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 386
Query: 297 -LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
LLD + C CPV FGRR+DP+G +I+RY+P LR FP +Y
Sbjct: 387 LLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKY 446
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
IY+PW AP VQ A C+I DYP+ +VNH +AS N + +++
Sbjct: 447 IYDPWNAPHDVQLAAKCVIGVDYPKPMVNHAEASRLNIERMRQ 489
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 207/457 (45%), Gaps = 102/457 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G+ G NR RFLLE L DLD LK G +L ++ G P + + +E N KLCFE D
Sbjct: 54 GSSRAGLNRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDT 113
Query: 64 EGVKPY--------QSFPTGSHPPRYQPCK-TLLN------------------FRDLSGL 96
+ PY Q+ + + + P TL N F L+G
Sbjct: 114 D---PYYQALDIRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFLKLAGE 170
Query: 97 PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
P + + + ++ + E+S T+ Y +M D + GGETEA
Sbjct: 171 PSWACAPLSTTVSSLPPVGDTGRSEISDVPTIKD----LGYEDMA-KDDWTPFRGGETEA 225
Query: 157 LIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
L +L E +S + + F+ S L T S LKFGCLS R FY + + +
Sbjct: 226 LKRLKESMSNKDWVAKFEKP---KGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIY 282
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ +G ++ GQL+WRE+FYT + P +D+M+ N IC IPW + + L
Sbjct: 283 KNV-KGHTSPPVSLVGQLLWREFFYTAAFGTPNFDRMKDNKICKQIPW-----NDDNELL 336
Query: 275 NAWKNGQTGYPFIDAVMRQLRR-----------------------------------LLD 299
AW++ +TG+P+IDA+M QLR+ L+D
Sbjct: 337 AAWRDARTGFPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLID 396
Query: 300 CTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ + P+ FG++ DP+G +I+ ++P L+ P QYIYEP
Sbjct: 397 SDWAINNANWLWLSCSSFFYQYNRVYSPITFGKKYDPNGDFIRHFLPVLKDMPKQYIYEP 456
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
W APL +Q+KA CII +DYP+ +V+H A E ++ +
Sbjct: 457 WTAPLSIQKKAKCIIGEDYPKPVVSHDIAIKECRKKM 493
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 212/474 (44%), Gaps = 116/474 (24%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
M +G NR+RFL + L DLD+QL+ +L++V+G PI +F +L + N L FE D E
Sbjct: 55 MQVGANRWRFLQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEP 114
Query: 65 ----------------GVKPYQ-------------SFPTGSHPPRYQPCKTLLNFRDLSG 95
G+K + G P YQ L+ L+
Sbjct: 115 YAQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAK 174
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
+ +P E +D + L++E P EQ K P + G + GGETE
Sbjct: 175 VLDKP-EKLD---ALTQPSRDELEQENDKVYDCPSQEQLVKKPN-ELGPNIFP--GGETE 227
Query: 156 ALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
L ++ + L+ E + F+ N + P T S LKFGCLS R FY L +
Sbjct: 228 GLRRMEDSLNDELWVARFEKPNTAPNSLEPSTT----VLSPYLKFGCLSSRLFYQRLKEI 283
Query: 214 FNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ P H ++ GQ++WRE++YT++A P +D+M N CL IPW + HP
Sbjct: 284 L-----AKHPKHSQPPVSLVGQVLWREFYYTVAAAEPNFDRMLGNVYCLQIPW--QEHP- 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
++L AW G+TGYPFIDA+MRQLR+
Sbjct: 336 --EHLEAWTYGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFE 393
Query: 297 --LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
LLD + + PV FG++ DP G YI++Y PEL +P +
Sbjct: 394 QLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNK 453
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
IYEPW A L Q + C++ +DYP RIV H L +K+ +KK IN++
Sbjct: 454 QIYEPWLATLQAQREYGCVLGEDYPHRIVKH---ELVHKENIKKMSEAYKINRE 504
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 157/311 (50%), Gaps = 77/311 (24%)
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP---- 183
VP E+ +P G + W GGETEAL +L++ L ++ +++N P
Sbjct: 209 VPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHLERK-------AWVANYERPRMNA 258
Query: 184 -DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
L PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT +
Sbjct: 259 NSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAA 317
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------ 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 318 TNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHH 372
Query: 297 -----------------------------LLDCTY---------------------CVCP 306
LLD + C CP
Sbjct: 373 LARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCP 432
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V FGRR DP G YI+RY+P+L+ FP +YIYEPW AP +Q+ A C+I DYP IVNH +
Sbjct: 433 VGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNHAE 492
Query: 367 ASLENKQYLKK 377
AS N + +K+
Sbjct: 493 ASRLNIERMKQ 503
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 145/472 (30%), Positives = 214/472 (45%), Gaps = 112/472 (23%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 63 --------------CEGVKPYQSFPTGSHPPRYQPCKTL----LNFRDLSGLPPRPK--- 101
EGVK + P K L + ++ G+ + K
Sbjct: 114 YSLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPK 173
Query: 102 -----EDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
E + H + ++++ S P EQ K PE + G ++ GGETEA
Sbjct: 174 VLGVPEKLKKMHTP---PKDEVEQKDSAAYDCPTMEQLVKRPE-ELGPN--KFPGGETEA 227
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFN 215
L ++ E L EI + + +P+ P T+ S LKFGCLS R F L +
Sbjct: 228 LRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIK 284
Query: 216 TIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
R P H ++ GQL+WRE++YT++A P +D+M N C+ IPW + HP+
Sbjct: 285 -----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPW--QEHPD-- 335
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+L AW +G+TGYPFIDA+MRQLR+
Sbjct: 336 -HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQL 394
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + + PV FG++ DP G YI++YVPEL ++P I
Sbjct: 395 LLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCI 454
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
YEPWKA L Q C++ DYP RIV H + +K+ +K+ A +N++
Sbjct: 455 YEPWKASLADQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAAYKVNRE 503
>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome-2 [Bos taurus]
gi|296479702|tpg|DAA21817.1| TPA: cryptochrome 2-like [Bos taurus]
Length = 585
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 157/311 (50%), Gaps = 77/311 (24%)
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP---- 183
VP E+ +P G + W GGETEAL +L++ L ++ +++N P
Sbjct: 203 VPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHLERK-------AWVANYERPRMNA 252
Query: 184 -DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
L PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT +
Sbjct: 253 NSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAA 311
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------ 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 312 TNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHH 366
Query: 297 -----------------------------LLDCTY---------------------CVCP 306
LLD + C CP
Sbjct: 367 LARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCP 426
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V FGRR DP G YI+RY+P+L+ FP +YIYEPW AP +Q+ A C+I DYP IVNH +
Sbjct: 427 VGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNHAE 486
Query: 367 ASLENKQYLKK 377
AS N + +K+
Sbjct: 487 ASRLNIERMKQ 497
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/483 (30%), Positives = 215/483 (44%), Gaps = 134/483 (27%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGVK + G P YQ K
Sbjct: 114 YSLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPK 173
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDP 145
L L +P PK++++ Q++ + + P EQ K PE + G
Sbjct: 174 VLGVPEKLKKMPTPPKDEVE-------------QKDSAAYD-CPTMEQLVKRPE-ELGPN 218
Query: 146 LIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVR 204
++ GGETEAL ++ E L EI + + +P+ P T+ S LKFGCLS R
Sbjct: 219 --KFPGGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCLSAR 273
Query: 205 RFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
F L + R P H ++ GQL+WRE++YT++A P +D+M N C+ I
Sbjct: 274 LFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQI 328
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------ 296
PW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 329 PW--QKHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWIS 383
Query: 297 -----------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYV 324
LLD + + PV FG++ DP G YI++YV
Sbjct: 384 WEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYV 443
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCII 384
PEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A +
Sbjct: 444 PELSKYPAGCIYEPWKASLADQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAAYKV 500
Query: 385 NKD 387
N++
Sbjct: 501 NRE 503
>gi|335281976|ref|XP_003353935.1| PREDICTED: cryptochrome-2 isoform 2 [Sus scrofa]
Length = 461
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 156/311 (50%), Gaps = 77/311 (24%)
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP---- 183
VP E+ +P G + W GGETEAL +L++ L ++ +++N P
Sbjct: 79 VPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHLERK-------AWVANYERPRMNA 128
Query: 184 -DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
L PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT +
Sbjct: 129 NSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAA 187
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------ 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 188 TNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHH 242
Query: 297 -----------------------------LLDCTY---------------------CVCP 306
LLD + C CP
Sbjct: 243 LARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCP 302
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V FGRR DP G YI+RY+P+L+ FP +YIYEPW AP VQ+ A CII DYP IVNH +
Sbjct: 303 VGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAE 362
Query: 367 ASLENKQYLKK 377
S N + +K+
Sbjct: 363 TSRLNIERMKQ 373
>gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens]
Length = 461
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 155/306 (50%), Gaps = 67/306 (21%)
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
VP E+ +P G + W GGETEAL +L++ L E +++ + + L
Sbjct: 79 VPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHL--ERKAWVANYERPRMNANSLLA 133
Query: 188 PPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT + +NP
Sbjct: 134 SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPR 192
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------- 296
+D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 193 FDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHA 247
Query: 297 ------------------------LLDCTY---------------------CVCPVNFGR 311
LLD + C CPV FGR
Sbjct: 248 VACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGR 307
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
R DP G YI+RY+P+L+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N
Sbjct: 308 RTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLN 367
Query: 372 KQYLKK 377
+ +K+
Sbjct: 368 IERMKQ 373
>gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens]
Length = 461
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 156/311 (50%), Gaps = 77/311 (24%)
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP---- 183
VP E+ +P G + W GGETEAL +L++ L ++ +++N P
Sbjct: 79 VPSLEEL-GFPTEGLGPAV--WQGGETEALARLDKHLERK-------AWVANYERPRMNA 128
Query: 184 -DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
L PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT +
Sbjct: 129 NSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAA 187
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------ 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 188 TNNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHH 242
Query: 297 -----------------------------LLDCTY---------------------CVCP 306
LLD + C CP
Sbjct: 243 LARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCGAFFQQFFHCYCP 302
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V FGRR DP G YI+RY+P+L+ FP +YIYEPW AP +Q+ A CII DYP IVNH +
Sbjct: 303 VGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 362
Query: 367 ASLENKQYLKK 377
S N + +K+
Sbjct: 363 TSRLNIERMKQ 373
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 145/507 (28%), Positives = 213/507 (42%), Gaps = 131/507 (25%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
+G R+ FLLE L DLD+ L++ G +L++++G P+ ++ +E T+L FE+D E
Sbjct: 49 VGVVRYNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYA 108
Query: 65 --------------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
G++ + H P K + I + +
Sbjct: 109 KLRDTQARELAEKHGIEVITTVGHTLHDPEQYIAKA------------GGADKIPLTYSS 156
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPL-----------------------I 147
FGT+ L + V + P E F + + D L +
Sbjct: 157 FGTLFRRLGK-VPAALSAPTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEV 215
Query: 148 RWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR 205
R+ GGETEAL ++ L ++ I F+ N + P TG S LKFGCLS R
Sbjct: 216 RFPGGETEALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTG----LSPYLKFGCLSPRL 271
Query: 206 FYWALHDHFNTIHE-GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
FY L + + +PP ++ GQL+WRE+F+ +D+ME N IC I W
Sbjct: 272 FYHELARVYAEYRDHAKPP--VSLHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDW-- 327
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------ 294
+ L AW+N +TGYP+IDA M QL
Sbjct: 328 ---DTNDALLAAWENARTGYPWIDACMTQLRREGWLHHLARHAVACFLTRGDLYQSWEKG 384
Query: 295 -----RRLLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELR 328
R L+D + PV FG++ DP G YI++Y+P+L+
Sbjct: 385 AQVFDRLLVDADWHLNSANWMWLSCSSFFYQYFRVYSPVAFGKKTDPSGAYIRKYLPQLK 444
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK--------KEKA 380
FP +YIYEPWKAP GVQ CII KDYPE IV+H + S NK ++ EKA
Sbjct: 445 AFPDKYIYEPWKAPPGVQRSCGCIIGKDYPEPIVDHAEVSAANKARIRACYDALKQAEKA 504
Query: 381 NCIINKDYPERIVNHVQASLENKQNVK 407
KD ++S ++ +K
Sbjct: 505 KKTTTKDAKSSGGASKRSSAQSSAKLK 531
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 149/476 (31%), Positives = 217/476 (45%), Gaps = 120/476 (25%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
M +G NR+RFL + L DLD+ LK +L+IV+G P+ IF L N L FE D E
Sbjct: 54 MKVGANRWRFLQQSLLDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEP 113
Query: 65 ----------------GVKP---------------YQSFPTGSHPPRYQPCKTLLNFRDL 93
GVK ++F G P YQ +++ L
Sbjct: 114 YAVKRDKAVQDIAAAHGVKVDTHCSHTIYNPEIVIAKNF--GRAPITYQKFLSVVEKLKL 171
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
+ +P+ + +++ L+ S P +Q K P+ + G + ++ GGE
Sbjct: 172 PKVLDKPQRLPN----GVQPIADELEMGQSDVYECPTLDQLVKRPQ-ELG--INKFPGGE 224
Query: 154 TEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
EAL +L+ LS E + SF+ N + P T S LKFGCLS R + LH
Sbjct: 225 REALRRLDTSLSDEHWVASFEKPNTAPNSLEPS----TTVLSPYLKFGCLSARLVHQRLH 280
Query: 212 DHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ R P H ++ GQL+WRE++YT +A P +D+M N CL IPW +
Sbjct: 281 EILK-----RHPKHSKPPVSLVGQLLWREFYYTAAAVEPNFDRMLGNVYCLQIPW--QER 333
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
P+ +L+AW +G+TGYPFIDA+MRQLR+
Sbjct: 334 PD---HLDAWAHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRV 390
Query: 297 ----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD + + PV FG++ D G YI++YVPEL ++P
Sbjct: 391 FEELLLDHDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDRTGAYIRKYVPELAKYP 450
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
IYEPWKA L Q + C++ DYP RIVNH + +K+ +K+ A IN++
Sbjct: 451 AGCIYEPWKATLADQREFGCVLGIDYPHRIVNH---DIVHKENIKRMSAAYKINRE 503
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 216/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 63 --------------CEGVKP-------------YQSFPTGSHPPRYQPC----------K 85
EGV+ ++ G P YQ K
Sbjct: 114 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPK 173
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 174 VLGVPEKLKKMPTPPKDEVE--------QKDSAAYDCPTIKQLVKRPEELGPNKFP---- 221
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 222 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 270
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 271 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 325
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 326 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDL 380
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 381 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 440
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 441 KYVPELSKYPATCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 497
Query: 382 CIINKD 387
+N++
Sbjct: 498 YKVNRE 503
>gi|343959648|dbj|BAK63681.1| cryptochrome 2 [Pan troglodytes]
Length = 380
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 148/290 (51%), Gaps = 74/290 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSV 203
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 16 WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSC 68
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 69 RLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW- 126
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 127 -DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 182
Query: 297 --------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPEL 327
LLD + C CPV FGRR DP G YI+RY+P+L
Sbjct: 183 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKL 242
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 243 KAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 292
>gi|344253241|gb|EGW09345.1| Cryptochrome-1 [Cricetulus griseus]
Length = 428
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 150/285 (52%), Gaps = 64/285 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GGETEAL +L L E +++ + + L PT S L+FGCLS R FY+
Sbjct: 51 WPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 108
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 109 KLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP 165
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 166 ---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 222
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGRR DP+G YI+RY+P LR FP
Sbjct: 223 EELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 282
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 283 KYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 327
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 211/464 (45%), Gaps = 116/464 (25%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G NR RFL+ L DLD L+ +LF+V+G P + KL + N TKL +E D E P
Sbjct: 48 GINRLRFLISSLQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTE---P 104
Query: 69 Y-----QSFPTGSHPPR----YQPCKTLLNFRDL----SGLPPRPKEDIDFRHVTFGTMS 115
Y ++ + R Y+ TL + + +G PP +T+ +
Sbjct: 105 YSRSRDKNVTMLAEEQRIQVIYKISHTLYDIDRIIEENNGKPP----------LTYNRLR 154
Query: 116 ESLQREVSLFQTVPKPEQ--------FHKYPEMDFGDPLIRWLG-------------GET 154
+ ++ S + +P P F + + ++G P + LG GE
Sbjct: 155 DIVKALGSPKKPIPAPTVEDMKNIAPFSEKHKPEYGIPSLEELGLDTSSLAEEIFPGGEQ 214
Query: 155 EALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
EAL +L+ + + + SF+ N +SP T S + FGCLS R F+W L +
Sbjct: 215 EALRRLDTYMQRPGWVCSFEKPNTSPNSLSPSTT----VLSPYVTFGCLSARTFWWRLAE 270
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+ PP ++ GQL+WRE+FYT S P +++M NP C + W ++
Sbjct: 271 VYQGKKHSDPP--VSLHGQLLWREFFYTASVGIPNFNKMTGNPACTQVDW-----DENQE 323
Query: 273 YLNAWKNGQTGYPFIDAVMRQLRR-----------------------------------L 297
YL AW+ +TG+PFIDA+M QLR+ L
Sbjct: 324 YLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEKLL 383
Query: 298 LDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
LD + + PV FG++ D +G YIK+Y+P L++FP QYIY
Sbjct: 384 LDGDWALNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPPQYIY 443
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
EPWKAP VQ+ A CI+ KDYP+ I+ H S +N Q +K+ A
Sbjct: 444 EPWKAPRSVQQAAGCIVGKDYPKPIIEHEVISKKNIQRMKQAYA 487
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 201/467 (43%), Gaps = 115/467 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
MHIG R+ FLL+ L DL + L G +L ++QG S+ + ++ N T++ +
Sbjct: 42 LASAMHIGALRWHFLLQSLEDLHKNLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDA 101
Query: 62 DCE------------------------------GVKPYQSFPTGSHPPRYQPCKTLLNFR 91
+ E K GS P Y K L+
Sbjct: 102 EMEPFYKEMEANIRRLGAELGFEVLSRVGHSLYDTKRILDLNGGSPPLTY---KRFLHIL 158
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT--VPKPEQFHKYPEMDFGDPLIRW 149
G P P R++T + E L + VP P P+ L W
Sbjct: 159 SQLGDPEVP-----VRNLTAEDFQRCMSPEPGLAERYRVPVPADLEIPPQ-----SLSPW 208
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGETE L +L + L+ + + +F + N + P TG S GCLSVR F+
Sbjct: 209 TGGETEGLRRLEQHLTDQGWVANFTKPRTIPNSLLPSTTG----LSPYFSMGCLSVRTFF 264
Query: 208 WALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
L + + H PP ++ GQL+WRE+FYT+++ + QM NPICL I W ++
Sbjct: 265 QRLSNIYAQAKHHSLPP--VSLQGQLLWREFFYTVASATQNFTQMAGNPICLQIHWYEDA 322
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+ L+ WK QTG+P+IDA+M QLR+
Sbjct: 323 -----ERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 377
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD Y + CPV FG+R DP+G YI++Y+P L+ F
Sbjct: 378 VFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGKRTDPEGQYIRKYLPVLKNF 437
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW A Q +A CII +DYP +VNH +AS N Q +++
Sbjct: 438 PTKYIYEPWTASEEEQRQAGCIIGRDYPFPMVNHKEASDRNLQLMRR 484
>gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens]
Length = 427
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 150/285 (52%), Gaps = 64/285 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GGETEAL +L L E +++ + + L PT S L+FGCLS R FY+
Sbjct: 51 WPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 108
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 109 KLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP 165
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 166 ---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 222
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGRR DP+G YI+RY+P LR FP
Sbjct: 223 EELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 282
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 283 KYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 327
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 217/460 (47%), Gaps = 111/460 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
IG+ RFRF+LEC+ DLD L+ + +L ++ G P+++ + + + LCFE+D +
Sbjct: 97 IGFQRFRFMLECMKDLDHSLRKYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKDSDIYS 156
Query: 65 --------------GVKPY-QSFPT------------GSHPPRYQPCKTLLNFRDLSGLP 97
GV+ + +S T G+ PP + L F + G P
Sbjct: 157 RNRDEKVLQRMKGLGVQCFVESGHTLYDLDMLVAKLNGNSPPTQM--TSFLKFIEQIGPP 214
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P+P E + + + L +S+ VP+ E+ Y + P + GGE++AL
Sbjct: 215 PKPIETVR----NIPPLRKELLSSISI-SKVPEIEEIPGYELITEPTP-CPFQGGESKAL 268
Query: 158 IKLNERLSQEIESFKSGVYLSN-QVSPDLTGPPTSQ--SAALKFGCLSVRRFYWAL---H 211
++ + L++E K V S SP PP++ S +K G LSVR F+W L
Sbjct: 269 ERMQQALNRE--QGKWIVRFSKPHTSPVSLDPPSTTVLSPYIKCGALSVRLFFWELKRVE 326
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D F+ + +PP ++ GQL WRE+FY + P++DQ++ NP+C IPW +++
Sbjct: 327 DSFSV--KTKPP--VSLIGQLYWREHFYLLGYTIPHFDQIQGNPLCKTIPW-----EHRQ 377
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
++ AW+ QTGYPFIDA M QL++
Sbjct: 378 EWFQAWEQAQTGYPFIDAAMTQLKQWGWLHHLTRHVVACFLTRGDLWISWEKGKETFEKY 437
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
L+D + + P+ F ++ DP G YI+ ++P LR P +YI
Sbjct: 438 LIDGDWSINAANWMWLSCSAFFTRYFRVYSPIAFPKKYDPHGNYIRYFLPVLRNMPNKYI 497
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
YEPWKAPL VQ++ NCI+ KDYP IV+H + N Q +
Sbjct: 498 YEPWKAPLKVQKEVNCILGKDYPLPIVDHEEMKKRNIQKM 537
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/463 (29%), Positives = 210/463 (45%), Gaps = 107/463 (23%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE------ 60
+IG R+RF+LE LADLD LK +LF+V+G P +F KL +E +KL FE
Sbjct: 50 NIGVVRWRFILESLADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEP 109
Query: 61 ---QDCEGVKPYQSFPT---------------------GSHPPRYQPCKTLLNFRDLSGL 96
QD E +K G+ P Y+ +++++ G
Sbjct: 110 ARKQDAEVLKIANKLGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSL---GP 166
Query: 97 PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
P P ID + V G + + ++ E + PE + + GGETEA
Sbjct: 167 PAAPLPAIDKKMVA-GCNTPTTANHDKIYGVPTLEEIGQEVPEESRE---VLYPGGETEA 222
Query: 157 LIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
L +L + +E + F+ N + P T S + +GCLS R FY L + +
Sbjct: 223 LERLEVYMKKEDWVCKFEKPNTAPNSIEPSTT----VLSPYMTYGCLSARLFYTRLAEIY 278
Query: 215 NTIHE-GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ +PP ++ GQL+WRE+F T + P +++M N +CL +PW ++Y
Sbjct: 279 AKKKKHSQPP--VSLHGQLLWREFFTTAAYKTPNFNKMVGNSLCLQVPW-----DQNDEY 331
Query: 274 LNAWKNGQTGYPFIDAVMRQL-----------------------------------RRLL 298
L AW +TGYP+IDA+M QL R L+
Sbjct: 332 LAAWAEARTGYPYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLI 391
Query: 299 DCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D + + PV FG++ DP+G YI++Y+P+L ++P +YIYE
Sbjct: 392 DHDWNLNAGNWMWLSASSFFHAYFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYE 451
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
PW APL VQEKA C+I +DYP IV+H + N +K+ ++
Sbjct: 452 PWNAPLAVQEKAGCVIGRDYPCPIVDHNKVVTRNMSRMKEARS 494
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 207/470 (44%), Gaps = 121/470 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+MHIG R+ FLL+ L DL L+ G L ++QG S+ + ++ N T++ + +
Sbjct: 44 SSMHIGALRWHFLLQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEM 103
Query: 64 E-----------GVKPYQSFPT------------------GSHPPRYQPCKTLLNFRDLS 94
E G+ F G PP K L L
Sbjct: 104 EPFYKEMEANIRGLGEELGFQVLSLMGHSLYNTQRILELNGGTPPL--TYKRFLRILSLL 161
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQR----EVSLFQT--VPKPEQFHKYPEMDFGDPLIR 148
G P P + +E QR E+ L + VP P PE +
Sbjct: 162 GDPEVPVRN---------PTAEDFQRCSPPELGLAECYGVPLPTDLKIPPE-----SISP 207
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGE+E L +L + L+ + + SF + N + P TG S GCLSVR F
Sbjct: 208 WRGGESEGLQRLEQHLADQGWVASFTKPKTVPNSLLPSTTG----LSPYFSTGCLSVRSF 263
Query: 207 YWALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
++ L + + H PP ++ GQL+WRE+FYT+++ P + +M NPICL I W +
Sbjct: 264 FYRLSNIYAQAKHHSLPP--VSLQGQLLWREFFYTVASATPNFTKMAGNPICLQIRWYED 321
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------------------------- 296
+ + L+ WK QTG+P+IDA+M QLR+
Sbjct: 322 A-----ERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGM 376
Query: 297 ------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
LLD Y + CPV FGRR DP+G YI++Y+P L+
Sbjct: 377 KVFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGQYIRKYLPILKN 436
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
FP +YIYEPW A Q++A CII +DYP +V+H +AS N Q +K+ +
Sbjct: 437 FPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEASDHNLQLMKQAR 486
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 114 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 173
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 174 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 221
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 222 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 270
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 271 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 325
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 326 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDL 380
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 381 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 440
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 441 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 497
Query: 382 CIINKD 387
+N++
Sbjct: 498 YKVNRE 503
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 113
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 114 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 173
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 174 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 221
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 222 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 270
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 271 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 325
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 326 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDL 380
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 381 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 440
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 441 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 497
Query: 382 CIINKD 387
+N++
Sbjct: 498 YKVNRE 503
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 200/462 (43%), Gaps = 116/462 (25%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
IG R+ F L+ + DL L+ LF++QG + ++ + N T++ F+ + E
Sbjct: 48 IGSKRWNFFLQSIEDLHCNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYY 107
Query: 65 ---------------------------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLP 97
+K + G P Y K L + G P
Sbjct: 108 KGLDERIRAMGQELGFEVVSMVAHTLYDIKKILALNCGKPPLTY---KNFLRVLSMLGNP 164
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFG---DPLIRWLGGET 154
+P I L E + +PKPE D G D W+GGE+
Sbjct: 165 DKPARQITSEDFIKCITPTKLAAEE--YYRIPKPE--------DLGISKDCPTNWIGGES 214
Query: 155 EALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
EAL +L + L ++ + +FK + N + P TG S GCLSVR F+ L +
Sbjct: 215 EALSRLEQHLEKQGWVANFKKPQTIPNSLLPSTTG----LSPYFSLGCLSVRVFFHRLSN 270
Query: 213 HF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + PP ++ GQL+WRE+FYT+++ P + M NPICL I W E
Sbjct: 271 IYAQSKNHSLPP--VSLQGQLLWREFFYTVASSTPNFTHMVGNPICLQIDWY-----KNE 323
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L WK +TG+P+IDA+M QL
Sbjct: 324 EQLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEF 383
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD YC+ CPV FG+R DP+G YI++Y+P L+ FP +YI
Sbjct: 384 LLDADYCINAGNWMWLSASAFFHHYTRIFCPVRFGKRSDPEGNYIRKYLPVLKNFPAKYI 443
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
YEPW AP +Q++A C+I KDYP +V+H AS N Q +++
Sbjct: 444 YEPWTAPEEIQKQAGCLIGKDYPLPMVDHKTASEHNLQLMRQ 485
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 196
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 197 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 244
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 245 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 293
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 294 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 349 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARMAVACFLTRGDL 403
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 404 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 463
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 464 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 520
Query: 382 CIINKD 387
+N++
Sbjct: 521 YKVNRE 526
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 196
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 197 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 244
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 245 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 293
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 294 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 349 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDL 403
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 404 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 463
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 464 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 520
Query: 382 CIINKD 387
+N++
Sbjct: 521 YKVNRE 526
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 196
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 197 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 244
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 245 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 293
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 294 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 349 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHNLARHAVACFLTRGDL 403
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 404 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 463
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 464 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 520
Query: 382 CIINKD 387
+N++
Sbjct: 521 YKVNRE 526
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
Length = 558
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 210/457 (45%), Gaps = 103/457 (22%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+ +G NR+RFL + L +LD L++ +L++V+G+P+ IF +L N + L +E D E
Sbjct: 53 LRVGPNRWRFLQQTLVNLDENLRTINSRLYVVRGNPVQIFPELFDRWNVSLLTYEHDIE- 111
Query: 66 VKPY--QSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
PY Q T R T + P E I R+ G + Q+ VS
Sbjct: 112 --PYAVQRDKTVEGHAREHNVTTHVEVSHTIFHP----ETIVKRN--GGKPPLTYQKYVS 163
Query: 124 LFQT------VPKPEQF---HKYPEMD---------FGDPLIRWLGGETEALIKL----- 160
L +P P++ PE D + P + L + +L++
Sbjct: 164 LASACTIPLPLPAPQKLPGKGVEPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGG 223
Query: 161 -NERLSQEIESFKSGVYLSN----QVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHF 214
E LS+ + ++ + SP+ P T+ S LKFGCLS R FY + +
Sbjct: 224 ETEALSRMEQCLSRKAWICSFEKPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETI 283
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+PP ++ GQ++WRE++Y ++A P +D+M N +C+ + W NKE YL
Sbjct: 284 KGQKHSQPP--VSLIGQMMWREFYYCVAAVTPNFDKMSGNDVCIQVDW----DTNKE-YL 336
Query: 275 NAWKNGQTGYPFIDAVMRQLRR-----------------------------------LLD 299
NAW G+TGYPFIDA+MRQLR+ LLD
Sbjct: 337 NAWTEGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLD 396
Query: 300 CTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ + PV FG++ DP+G YIK+YVPEL +FP IYEP
Sbjct: 397 ADWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEP 456
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
WKA L Q+K CII KDYP+RIV H + S N Q +
Sbjct: 457 WKANLETQKKLGCIIGKDYPKRIVVHEEISKTNIQRM 493
>gi|355681092|gb|AER96734.1| cryptochrome 1 [Mustela putorius furo]
Length = 449
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 151/291 (51%), Gaps = 64/291 (21%)
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
G P W GGETEAL +L L E +++ + + L T S L+FGCLS
Sbjct: 67 GLPSAVWPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASSTGLSPYLRFGCLS 124
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 125 CRLFYFKLTDLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW 183
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P + L W G+TG+P+IDA+M QLR+
Sbjct: 184 --DKNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWE 238
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP+G YI+RY+P
Sbjct: 239 EGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPV 298
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
LR FP +YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 299 LRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 349
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 214/491 (43%), Gaps = 135/491 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
IG R+RF+L+ + +LD L+ G +LF+V+G P +L RE +KL FE D E
Sbjct: 61 IGVLRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVSKLTFESDTE--- 117
Query: 68 PY-------------------QSFPTGS-HPPR--------------YQ----------P 83
PY Q+FP+ + H P YQ P
Sbjct: 118 PYAKVRDRHVCELAAKHQVHVQTFPSHTLHDPEAYVARLQGKDVPTVYQSFVKLFASMGP 177
Query: 84 CKTLLNFRDLSGLPPRPKEDI---DFRHVTFG---TMSESLQREVSLFQTVPKPE-QFHK 136
+ + D LPP E + D + G E ++ + + P+
Sbjct: 178 VAPVASTVDAKRLPPPAPEYLSGQDGKKAGQGNGHAGGEEIEEDRTRGDDFSVPDLSGIG 237
Query: 137 YPEMDFGDPLIRWLGGETEALIKLNERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQ-S 193
YPE D P + + GGET AL ++ E L+ + I +F+ + SP+ P T+ S
Sbjct: 238 YPETD--APTL-YPGGETAALARMQEHLANVKYIVTFEK-----PKTSPNALRPSTTVLS 289
Query: 194 AALKFGCLSVRRFYWALHDHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQ 250
LK G LS R FY +L H+G +PP ++ GQL+WRE+FY P +D+
Sbjct: 290 PYLKHGALSSRLFYHSLRSILAQ-HKGPHTQPP--VSLVGQLLWREFFYLQGHATPNFDK 346
Query: 251 MEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------- 296
M NPIC IPW + L AW+ +TGYPFIDA M QLR
Sbjct: 347 MVGNPICRQIPW-----GKNAELLGAWEEARTGYPFIDACMTQLREEGWIHHLARHALAC 401
Query: 297 ---------------------LLDCTYCV---------------------CPVNFGRRLD 314
LLD + V PV FG + D
Sbjct: 402 FLTRGDLWQSWEEGARVFEKYLLDADWSVNTGNWLWLSASAFFHQYFRVYSPVAFGAKTD 461
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQY 374
+G YI++Y+P LR+ PI+YIYEPWKAP GVQE A C++ +DYP +V+H S KQ
Sbjct: 462 KEGEYIRKYLPVLRKMPIKYIYEPWKAPKGVQETAGCVVGRDYPHPVVDHATVS---KQL 518
Query: 375 LKKEKANCIIN 385
+ K KA N
Sbjct: 519 MGKMKAAYDAN 529
>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
Length = 498
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 205/459 (44%), Gaps = 105/459 (22%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE------ 64
N +RFL+E L DLD+ L+ + +LFI+QG PI +F KL ++ N +KL FE D E
Sbjct: 49 NGWRFLIESLRDLDQSLQKYNSRLFIIQGQPIDVFPKLIKQWNISKLTFEYDSEPFPRQR 108
Query: 65 --GVK------PYQSFPTGSHPPRYQPC----------KTLLNFRDLSGL------PPRP 100
VK SH C K + F+D + P P
Sbjct: 109 DLAVKRIAEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENP 168
Query: 101 KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL 160
E I R + F E K ++ GD W+GGE EAL +L
Sbjct: 169 VESIT-RKSFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGD---MWVGGEREALNRL 224
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHE 219
+ + S S N + P +Q S L+FGCLS + +Y L + +
Sbjct: 225 GILEDKILGSNSS----KNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQF 280
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
PP ++ QLIWRE+F+T+++ NP DQ+ NP+C+ I W NK+ +L WK
Sbjct: 281 SPPP--MSLYRQLIWREFFFTLASKNPNMDQVNDNPLCIQISW----EENKDHFL-CWKQ 333
Query: 280 GQTGYPFIDAVMRQ---------LRRL--------------------------LDCTYCV 304
G TG+P+IDA+MRQ L RL LD + +
Sbjct: 334 GNTGFPWIDAIMRQLQKEGWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSM 393
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
CPV G++LDP G YI++YVPELR P++Y+YEPW AP
Sbjct: 394 NSGSWLWLSCSAFFHGQIPWFCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPD 453
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382
+Q A C+I +DYP IV+H++ + K L++ K C
Sbjct: 454 DIQRAAMCVIGEDYPHPIVDHIE---QRKACLQRLKTVC 489
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 214/496 (43%), Gaps = 117/496 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD L+ G +L +++G P + + +E +LCFE D
Sbjct: 53 PGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYD 112
Query: 63 CE--------GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFRD 92
+ VK Y S G PP YQ +F
Sbjct: 113 TDPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQ------SFLK 166
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGG 152
L+G P + + + E+S TV E ++ D P GG
Sbjct: 167 LAGQPSWASSPLLTTLSWLPPVGDVGTCEISNVPTVK--ELGYEEIGQDESTPF---KGG 221
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRF 206
E+EAL +L E S + +++N P L T S LKFGCLS R F
Sbjct: 222 ESEALKRLRE-------SIRDKEWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYF 274
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y L D + + P ++ GQL+WR++FYT+ P +D+M+ N IC IPW
Sbjct: 275 YQCLTDVYKNMKWHTSPP-VSLVGQLLWRDFFYTVGFGTPNFDRMKGNRICKQIPW---- 329
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+ ++ L AW+ +TGYP+IDA+M QLR+
Sbjct: 330 -NDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRD 388
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
L+D + + P++FG++ DP+G YI+ ++P L+
Sbjct: 389 VFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPILKDM 448
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA-NCIINKDYP 389
P +YIYEPW AP +Q KA CII KDYP+ +V H A E K+ L + A N ++
Sbjct: 449 PKEYIYEPWTAPPSIQAKAKCIIGKDYPKPVVCHDSAIKECKRKLAEAYALNKRLDGSVT 508
Query: 390 ERIVNHVQASLENKQN 405
E + ++ LE +N
Sbjct: 509 EEDLKKLRRKLEEDEN 524
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 214/496 (43%), Gaps = 117/496 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD L+ G +L +++G P + + +E +LCFE D
Sbjct: 79 PGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYD 138
Query: 63 CE--------GVKPYQSFP---------------------TGSHPP-RYQPCKTLLNFRD 92
+ VK Y S G PP YQ +F
Sbjct: 139 TDPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQ------SFLK 192
Query: 93 LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGG 152
L+G P + + + E+S TV E ++ D P GG
Sbjct: 193 LAGQPSWASSPLLTTLSWLPPVGDVGTCEISNVPTVK--ELGYEEIGQDESTPF---KGG 247
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRF 206
E+EAL +L E S + +++N P L T S LKFGCLS R F
Sbjct: 248 ESEALKRLRE-------SIRDKEWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYF 300
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y L D + + P ++ GQL+WR++FYT+ P +D+M+ N IC IPW
Sbjct: 301 YQCLTDVYKNMKWHTSPP-VSLVGQLLWRDFFYTVGFGTPNFDRMKGNRICKQIPW---- 355
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+ ++ L AW+ +TGYP+IDA+M QLR+
Sbjct: 356 -NDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRD 414
Query: 297 -----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
L+D + + P++FG++ DP+G YI+ ++P L+
Sbjct: 415 VFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPILKDM 474
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA-NCIINKDYP 389
P +YIYEPW AP +Q KA CII KDYP+ +V H A E K+ L + A N ++
Sbjct: 475 PKEYIYEPWTAPPSIQAKAKCIIGKDYPKPVVCHDSAIKECKRKLAEAYALNKRLDGSVT 534
Query: 390 ERIVNHVQASLENKQN 405
E + ++ LE +N
Sbjct: 535 EEDLKKLRRKLEEDEN 550
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 135/461 (29%), Positives = 199/461 (43%), Gaps = 116/461 (25%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
IG R+ FLL+ + DL L+ LF++QG S+ ++ ++ + T++ F+ + E
Sbjct: 48 IGSKRWNFLLQSIEDLHCNLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPYY 107
Query: 65 ---------------------------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLP 97
VK + G P Y K L + G P
Sbjct: 108 KGMDERIRAMGQELGFDVVSKVAHTLYDVKSILALNYGKPPLTY---KNFLRVLSVLGDP 164
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFG---DPLIRWLGGET 154
+P I T E + +PKPE D G D W GGE+
Sbjct: 165 DKPARQITLEDFIKCTTPTEFAAEE--YYRIPKPE--------DLGICRDCAPNWKGGES 214
Query: 155 EALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
EAL +L + L ++ + +F+ + N + P TG S FGCLS R FY L +
Sbjct: 215 EALCRLEQHLEKQGWVANFQKPQTVPNSLLPSTTG----LSPYFSFGCLSARVFYHRLSN 270
Query: 213 HF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + PP ++ GQL+WRE+FYT ++ P + M NPICL I W E
Sbjct: 271 IYAQSKNHSLPP--VSLQGQLLWREFFYTAASSTPNFTHMVGNPICLQIEWY-----KNE 323
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W+ G+TG+P+IDA+M QL
Sbjct: 324 EQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 383
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD Y + CPV FGRR DP+G YI++Y+P L+ FP +YI
Sbjct: 384 LLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGNYIRKYLPVLKNFPAKYI 443
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
Y PW AP +Q+++ C+I KDYP +V+H AS N Q ++
Sbjct: 444 YAPWTAPEEIQKQSGCLIGKDYPLPMVDHTTASEHNLQLMR 484
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 145/475 (30%), Positives = 209/475 (44%), Gaps = 118/475 (24%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD+QL+ +LF+V+G P+ +F ++ + L FE D
Sbjct: 54 MQVGANRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEP 113
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPCKTLLNFRDLSG 95
EG+K + G P YQ L+ D
Sbjct: 114 YALQRDAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQ---KFLSVVDQLK 170
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
+P + E Q++ + + P EQ K PE D G ++ GGETE
Sbjct: 171 VPKVLELPEKLAKKALPPKDEVEQQDDNAYD-CPTLEQLVKRPE-DLGPN--KFPGGETE 226
Query: 156 ALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
L ++ E L E + F+ N + P T S LKFGCLS R F H
Sbjct: 227 GLRRMKESLRDELWVARFEKPNTAPNSLEPSTT----VLSPYLKFGCLSARLF----HQQ 278
Query: 214 FNTI-----HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
I +PP ++ GQL+WRE++YT++A P +D+M N CL IPW ++
Sbjct: 279 LKAILKRQSKHSQPP--VSLIGQLLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEQA-- 334
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+L AW +G+TGYPFIDA+MRQLR+
Sbjct: 335 ---DHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 297 ---LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + + PV FG++ DP G YI++YVPEL ++P
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPN 451
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
IYEPWKA L Q + C++ DYP RIV H L +K+ +K+ A +N++
Sbjct: 452 GCIYEPWKATLADQREYGCVLGVDYPHRIVKH---ELVHKENIKRMSAAYKVNRE 503
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 212/468 (45%), Gaps = 111/468 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL-------------- 48
P ++IG NR++FL+ L DLD L+ +LF+V+G +F KL
Sbjct: 42 PNNVNIGINRWKFLIGALKDLDCSLRKLNSRLFVVRGKTDEVFPKLFQKWKVTRLTYEYD 101
Query: 49 ------KRELNFTKLCFEQDCEGVKPYQSFPT------------GSHPPRYQPCKTLLNF 90
+R+ +L E E + Y+ T G P Y +TL++
Sbjct: 102 TEPFSLRRDKEVGRLAEEHGVEII--YKVSHTLYNIDRIIEENNGKAPLTYNRLQTLVSS 159
Query: 91 RDLSGLP-PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
P P P D D + V T E T+ E+ ++ PE + L
Sbjct: 160 IGPPKRPIPAPTCD-DMKDVK--TPCSEKHEENYGISTL---EKLYQDPE-SLTEELFP- 211
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYW 208
GGE EAL +L++ ++++ + G + Q SP+ P T+ S + FGCLS R F+W
Sbjct: 212 -GGEQEALRRLDQHMARK--EWVCG-FEKPQTSPNSLSPSTTVLSPYMTFGCLSARTFWW 267
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+L D + +PP ++ GQL+WRE+FYT P +D+ME NP+C + W
Sbjct: 268 SLTDVYQGKKHSQPP--VSLHGQLLWREFFYTAGLGIPNFDKMEGNPVCTQVDW-----D 320
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ +YL AW +TG+PFIDA+M QLR+
Sbjct: 321 SNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVF 380
Query: 297 ---LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + + P+ FG++ D +G YIK+Y+P L+++P
Sbjct: 381 EELLLDGDWSLNAGNWQWLSASTFFHQFFRVYSPIAFGKKTDKNGDYIKKYLPHLKKYPA 440
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
QYIYEPWKAP VQE A CI+ KDYP IV H S +N Q +K A
Sbjct: 441 QYIYEPWKAPRSVQEAAGCIVGKDYPRPIVEHEVISKKNIQRMKAAYA 488
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 209/470 (44%), Gaps = 124/470 (26%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+MHIG R+ FLL+ L DL L G L ++QG ++ + ++ N T++ + +
Sbjct: 44 SSMHIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEM 103
Query: 64 E-------------------------GVKPYQS-----FPTGSHPPRYQPCKTLLNFRDL 93
E G Y + G+ P Y K L+ L
Sbjct: 104 EPFYKEMEANIRALGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTY---KRFLHILSL 160
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQR----EVSLFQT--VPKPEQFHKYPEMDFGDPLI 147
G P P R++T +E QR E+ L + VP P PE +
Sbjct: 161 LGDPEMP-----IRNLT----AEDFQRCSPPELCLAECYRVPLPTDLKIPPE-----SIS 206
Query: 148 RWLGGETEALIKLNERLSQE---IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
W GGE+E L +L + L+ + SF + N + P TG S GCLSVR
Sbjct: 207 PWRGGESEGLQRLEQHLADRSGWVASFTKPKTVPNSLLPSTTG----LSPYFSMGCLSVR 262
Query: 205 RFYWALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
F++ L + + H PP ++ GQL+WRE+FYT+++ P + +M NPICL I W
Sbjct: 263 SFFYRLSNIYAQAKHHSLPP--VSLQGQLLWREFFYTVASATPNFTKMAGNPICLQIRWY 320
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------- 296
++ + L+ WK QTG+P+IDA+M QLR+
Sbjct: 321 EDA-----ERLHRWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEE 375
Query: 297 --------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPEL 327
LLD Y + CPV FGRR DP+G YI++Y+P L
Sbjct: 376 GMKVFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGQYIRKYLPIL 435
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ FP +YIYEPW A Q++A CII +DYP +V+H +AS N Q +K+
Sbjct: 436 KNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEASDHNLQLMKQ 485
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
Length = 535
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 195/460 (42%), Gaps = 123/460 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + G NR+RFL + L DLD L+ G +L++++G P +F L + N L FE
Sbjct: 55 FRKYIRAGANRWRFLQQSLVDLDTTLRKLGTRLYVIRGLPHEVFPDLFAKWNVKLLTFEL 114
Query: 62 DCE-----------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFR 91
D E GVK Q GS P YQ F
Sbjct: 115 DTEPYARERDNQVEQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQ------KFV 168
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMD-------FGD 144
+ G P P+ I + L E L + PE P +D F
Sbjct: 169 SVVGSMPTPRRPI--------PAPDMLPSECLLDDDLNNPE--FDVPTLDELLTLKGFNP 218
Query: 145 PLIR---WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGC 200
++ + GGE EAL +L E + + K + SP+ P T+ S +KFGC
Sbjct: 219 AELKPCLYPGGEKEALRRLEEYMKNKTWVCK---FEKPNTSPNSLKPSTTVLSPYMKFGC 275
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
LS FY+ L + +PP ++ GQL WRE++YT+ A P +D+M N IC +
Sbjct: 276 LSASHFYYRLKEVIGNSPHSKPP--VSLIGQLYWREFYYTVGASTPNFDKMVGNSICCQV 333
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------ 296
PW N L AW NG+TGYPFIDA+MRQLR
Sbjct: 334 PW-----DNNPDALEAWTNGKTGYPFIDAIMRQLRDEGWIHHLARHAVACFLTRGDLWIS 388
Query: 297 -----------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYV 324
LLD + + PV FG++ D G YI++Y+
Sbjct: 389 WEKGLAVFEELLLDADWSMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKSGDYIRKYI 448
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
PEL ++P QYIYEPW AP +QE+A C++ YP+R+V H
Sbjct: 449 PELAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPKRVVVH 488
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 212/456 (46%), Gaps = 88/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI----------------- 260
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ I
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRT 335
Query: 261 --PWLPE--SHPNKEKYLN------------------AWKNGQTGYPFID---------- 288
PW+ + +E +++ +W+ G F
Sbjct: 336 GFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKQSLFYKFKNINHFASL 395
Query: 289 ---AVMRQLRRLLDCTYC----VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
+ + L ++ T+C + P+ R DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 396 QHHSFLVLLCNVMHTTFCHLYLIVPI---MRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 452
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 453 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 488
>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
Length = 550
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 211/469 (44%), Gaps = 101/469 (21%)
Query: 3 PGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD R+L S L ++ LK + N KLCF
Sbjct: 62 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 120
Query: 60 EQDCEGV-----KPYQSFPTGSHPPRYQPCKTLL-------------------NFRDLSG 95
E D E K F S + P L +F ++G
Sbjct: 121 ESDTEPYALARDKKVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFVSIAG 180
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
PP P I + + ++ + E+ VP E+ + P R GGETE
Sbjct: 181 EPPDP---IMEEYSELPPLGDTGEYEL---LPVPTVEELGYVDISEEEIPPFR--GGETE 232
Query: 156 ALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
AL ++ E L Q E S L T S LKFGCLS R FY + D +
Sbjct: 233 ALRRMKESL-QNKEWVAKFEKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYK 291
Query: 216 TI-HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
++ + +PP ++ GQL+WR++FYT+S P +D+M+ N IC IPW E+
Sbjct: 292 SVRNHTKPP--VSLIGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPW-----SENEELF 344
Query: 275 NAWKNGQTGYPFIDAVMRQLRR-----------------------------------LLD 299
AW++GQTGYP+IDA+M QLR+ L+D
Sbjct: 345 VAWRDGQTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLID 404
Query: 300 CTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ + P+ FG++ DP+G YI+ ++P L+ P +YIYEP
Sbjct: 405 SDWAINNGNWMWLSCSSFFYQYHRIYSPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEP 464
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
W APL +Q+KANCII KDYP+ +V+H AS E K+ + + A+ ++ +
Sbjct: 465 WTAPLSIQKKANCIIGKDYPKPVVDHETASKECKKRMGEAYASSRLDAN 513
>gi|384080881|dbj|BAM11103.1| cryptochrome 2 (photolyase-like), partial [Siebenrockiella
crassicollis]
Length = 358
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 149/290 (51%), Gaps = 76/290 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSV 203
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 59 WKGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSC 111
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R FY+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 112 RLFYYRLWELYKKVKRTPP---LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW- 167
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------- 296
+ +P L W G+TG+P+IDA+M QL++
Sbjct: 168 -DRNPEA---LAKWAEGKTGFPWIDAIMTQLKQEGWIHHLARHAVACFLTRGDLWISWES 223
Query: 297 --------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPEL 327
LLD + C CPV FGRR DP G Y++RY+P+L
Sbjct: 224 GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPKL 283
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ FP +YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 284 KGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 333
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/471 (30%), Positives = 201/471 (42%), Gaps = 123/471 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
+MHIG R+ FLL+ L DL + L G L ++QG + + ++ N T++ +
Sbjct: 42 LTSSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDA 101
Query: 62 DCE------------------------------GVKPYQSFPTGSHPPRYQPCKTLLNFR 91
+ E + GS P Y K L+
Sbjct: 102 EMEPFYKEMEANIQRLGAELGFEVLSLVSHSLYNTQRILDLNGGSPPLTY---KRFLHIL 158
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQR----EVSLFQT--VPKPEQFHKYPEMDFGDP 145
L G P P ++ +E QR E L + VP P PE
Sbjct: 159 SLLGDPELPVRNL---------TAEDFQRCRAPEPGLAECYRVPLPVDLKISPE-----S 204
Query: 146 LIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSV 203
L W GGETE L +L + L + + SF N + P TG S GCLSV
Sbjct: 205 LSPWRGGETEGLRRLEQHLIDQGWVTSFAKPRTSPNSLLPSTTG----LSPYFSMGCLSV 260
Query: 204 RRFYWALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R F++ L + + H PP ++ GQL+WRE+FYT+++ P + QM NPICL I W
Sbjct: 261 RTFFYRLSNIYAQAKHHSLPP--VSLQGQLLWREFFYTVASATPNFTQMAGNPICLQISW 318
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
++ + L+ WK +TG+P+IDA+M QLR+
Sbjct: 319 YKDA-----ERLHKWKTAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWE 373
Query: 297 ---------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPE 326
LLD Y + CPV FG+R DP G YI++Y+P
Sbjct: 374 EGMKVFEELLLDADYSINAGNWMWLSASAFFHQYTRIFCPVRFGKRTDPQGNYIRKYLPI 433
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
L+ FP +YIYEPW A Q+ A CII +DYP +VNH +AS N Q +K+
Sbjct: 434 LKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFPMVNHKEASDHNLQLMKQ 484
>gi|333755446|gb|ADN94465.2| cryptochrome 2 [Helicoverpa armigera]
Length = 657
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 144/285 (50%), Gaps = 65/285 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGE+EAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 243 WIGGESEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 300
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + + + RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW
Sbjct: 301 QLTELYKRVKRVRPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----E 353
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
++ L W +GQTG+P+IDA+M QLR
Sbjct: 354 KNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 413
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G +I+RY+P L+ P
Sbjct: 414 DELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRRYIPALKNMPT 473
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW AP VQ+ A CII +DYP +V+H +AS N + +K+
Sbjct: 474 RYIHEPWVAPEAVQQSARCIIGRDYPMPMVDHSKASQVNIERIKQ 518
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 74 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 133
Query: 62 DCE 64
D E
Sbjct: 134 DPE 136
>gi|302745156|gb|ADL62681.1| criptochrome 2a, partial [Phreatichthys andruzzii]
Length = 488
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 147/291 (50%), Gaps = 64/291 (21%)
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
G P W GGETEAL ++ L E +++ + + L PT S L+FGCLS
Sbjct: 56 GLPSAVWPGGETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLS 113
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + + P ++ GQL+WRE+FYT + NP +D+ME NPIC+ IPW
Sbjct: 114 CRLFYFKLTDLYRKVKKTNTPP-LSLYGQLLWREFFYTAATSNPRFDKMEGNPICVRIPW 172
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P + L W +TG+P+IDA+M QLR+
Sbjct: 173 --DKNP---EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWE 227
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP+G +I+RY+P
Sbjct: 228 EGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPI 287
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
LR FP +YIY+PW AP VQ A CII YP+ +VNH +AS N + +K+
Sbjct: 288 LRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQ 338
>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
Length = 625
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 145/288 (50%), Gaps = 65/288 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGE+EAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 244 WIGGESEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 301
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + + + RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW
Sbjct: 302 QLTELYKRVKRVRPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----E 354
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
++ L W +GQTG+P+IDA+M QLR
Sbjct: 355 KNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 414
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G +I+RY+P L+ P
Sbjct: 415 DELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRRYIPALKNMPT 474
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
+YI+EPW AP VQ+ A CII +DYP +V+H +AS N + +K+ A
Sbjct: 475 RYIHEPWVAPESVQQSARCIIGRDYPLPMVDHSKASQVNIERIKQVYA 522
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 75 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEE 134
Query: 62 DCE 64
D E
Sbjct: 135 DPE 137
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 789
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 185/462 (40%), Gaps = 147/462 (31%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 88 FAGSSNVGINKWRFLLQCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEE 147
Query: 62 DCEGVKPYQSFP------------------------------TGSHPPRYQPCKTLLNFR 91
D E + G P Y + ++
Sbjct: 148 DPEPFGKVRDHNISEMCKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASM 207
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
D PP+P+ I + + + VP E+ + P+ W+G
Sbjct: 208 DA---PPQPEPAITLAAIGRAVTPQCDDHDDKY--GVPTLEEL-GFETEGLKPPI--WVG 259
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L ++ K PP S LH
Sbjct: 260 GETEALARLERHLERKAWKIKKAY------------PPLS------------------LH 289
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
GQL WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 290 ------------------GQLFWREFFYCAATKNPNFDKMAGNPICVQIPW-----DRNA 326
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W +GQTG+P+IDA+M QLR
Sbjct: 327 EALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 386
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP +YI
Sbjct: 387 LLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYI 446
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW AP VQ A CII K+YP +VNH AS N + +K+
Sbjct: 447 HEPWNAPESVQRAARCIIGKNYPLPMVNHAIASRANMERIKQ 488
>gi|386762985|gb|AFJ22639.1| cryptochrome 2 [Agrotis ipsilon]
Length = 812
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 144/285 (50%), Gaps = 65/285 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+GGE+EAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 267 WIGGESEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 324
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + + + RPP ++ GQ++WRE+FY + NP +D+ME NPIC+ IPW
Sbjct: 325 QLTELYKRVKRVRPP--LSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPW-----E 377
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
++ L W +GQ+G+P+IDA+M QLR
Sbjct: 378 KNQEALAKWASGQSGFPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 437
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G +I+RY+P L+ P
Sbjct: 438 DELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRRYIPALKNMPT 497
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW AP VQ+ A CII +DYP +V+H +AS N + +K+
Sbjct: 498 RYIHEPWVAPESVQQAARCIIGRDYPMPMVDHAKASQVNIERIKQ 542
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + ++G N++RFLL+CL DLD L+ +LF+V+G P KL RE T L FE+
Sbjct: 98 FASSSNVGINKWRFLLQCLEDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEE 157
Query: 62 DCE 64
D E
Sbjct: 158 DPE 160
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 213/468 (45%), Gaps = 111/468 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD R+L S L P ++ L R+ N KLCF
Sbjct: 62 PGSARAGVARVRFLLESLSDLDAGLRRLGSRLLLLRARDDVPDALCAAL-RDWNIGKLCF 120
Query: 60 EQDCE-----------------GVKPYQSFPTGSHPPRY-------QPCKTLLNFRDLSG 95
E D E G++ + P +P T +F ++G
Sbjct: 121 EADTEPYALARDKRVTDFAAALGIEVFTPVSHTLFDPAEIIEKNGGRPPLTYQSFLAIAG 180
Query: 96 LPPRPKEDIDFRHVTFGTMSE-SLQREVSLFQTVPKPEQFHKYPEMDFGD----PLIRWL 150
PP+P SE L + ++ +P P K E+ +GD + +
Sbjct: 181 EPPKP---------VMAEYSELPLIGDTGEYELLPVP----KLEELGYGDISQENISPFR 227
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGETEAL ++ E L Q+ E S L T S LKFGCLS R FY +
Sbjct: 228 GGETEALKRMRESL-QDKEWVSMFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCI 286
Query: 211 HDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ + +T +PP ++TGQL+WR++FYT+S +D M+ N IC IPW
Sbjct: 287 QEVYRSTKKHTKPP--VSLTGQLLWRDFFYTVSFGTLSFDHMKGNKICKQIPWR-----Q 339
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------------------- 296
E+ AW++G+TGYP+IDA+M QLR+
Sbjct: 340 NEELFVAWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFE 399
Query: 297 --LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
L+D + + P++FG++ DP+G YI+ ++P L+ P +
Sbjct: 400 RLLIDSDWAINNGNWLWLSCSSFFYQYHRIYSPISFGKKYDPNGDYIRHFIPVLKDMPKE 459
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
YIYEPW APL VQEKA CI+ +DYP+ +V+H AS E ++ + + A+
Sbjct: 460 YIYEPWTAPLSVQEKARCIVGRDYPKPVVDHEAASKECRKRMGEAYAS 507
>gi|413936069|gb|AFW70620.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 548
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 203/466 (43%), Gaps = 109/466 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLD---RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD R+L S L ++ LK + N KLCF
Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEGV-----KPYQSFPTGSHPPRYQPCKTLL-------------------NFRDLSG 95
E D E K F S P L +F ++G
Sbjct: 120 ESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAG 179
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD----PLIRWLG 151
PP P + G E ++ +P P E+ +GD + + G
Sbjct: 180 EPPAPAMEEYSELPPLGDTGE--------YELLPVP----TVEELGYGDISQEEIPPFHG 227
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ E L Q E S + T S LKFGCLS R FY +
Sbjct: 228 GETEALRRMKESL-QNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQ 286
Query: 212 D-HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
D H + + +PP ++TGQL+WR++FYT+S P +D+M+ N IC IPW
Sbjct: 287 DVHRSVRNHTKPP--VSLTGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPW-----SEN 339
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------------- 296
E AW++GQTGYP+IDA+M QLR
Sbjct: 340 EDLFVAWRDGQTGYPWIDAIMIQLRNWGWMHHLARHSVACFLTRGDMFIHWEKGRDVFER 399
Query: 297 -LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
L+D + + P+ FG++ DP+G YI+ ++P L+ P +Y
Sbjct: 400 LLIDSDWAINNGNWLWLSCSSFFYQYHRIYSPITFGKKYDPNGNYIRHFIPVLKDMPREY 459
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
IYEPW AP +Q+KANCII KDYP+ +V+H AS E ++ + + A
Sbjct: 460 IYEPWTAPTSIQKKANCIIGKDYPKPVVDHETASKECRKRMGEAYA 505
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/441 (30%), Positives = 195/441 (44%), Gaps = 92/441 (20%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R FLLE L DLD QL++ G +LF+V+G P + +L E N KL FE D E +
Sbjct: 56 RTAFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARD 115
Query: 72 FPTGSHPPR------YQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSES-------- 117
GS + TL N ++ L + + + F + ++
Sbjct: 116 REVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCA 175
Query: 118 --LQREVSLFQTVPKPEQFHKY--PEM-DFG-DPLIRWL---GGETEALIKLNERLSQE- 167
+ ++ P ++ ++ P + D G +PL + L GGE EAL +L +++E
Sbjct: 176 PDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMARED 235
Query: 168 -IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF 226
I F+ N + P T S + GCLS RRF+ AL + +PP
Sbjct: 236 WISKFEKPKTSPNSIEPSTT----VLSMYISHGCLSTRRFWHALCKVYTKKGGSKPP--V 289
Query: 227 NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
++ GQL+W+E+ Y P +D+M NP+ IPW E+ L AWK +TG+P+
Sbjct: 290 SLKGQLLWKEFNYFSGYSIPSFDKMVGNPVIRQIPW-----DKDEEKLMAWKEARTGFPW 344
Query: 287 IDAVMRQLRR-----------------------------------LLDCTY--------- 302
IDA M QL+ LLD +
Sbjct: 345 IDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQW 404
Query: 303 ------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
C P+ FG++ D +G YIK+Y+P LR+FP +YIYEPW APL VQ
Sbjct: 405 LSCSAFFYQYFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCG 464
Query: 351 CIISKDYPERIVNHVQASLEN 371
CII KDYP+ IV+H S N
Sbjct: 465 CIIGKDYPKPIVDHADTSKAN 485
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 539
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 200/429 (46%), Gaps = 94/429 (21%)
Query: 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--GVKPYQSFPTGSHPPRYQ 82
R L+ +L +V+G+P+ +F +L RE N T L FE D E VK + + + +
Sbjct: 51 RWLRVGPNRLHVVRGNPVEMFPELFREWNVTLLTFEHDIEPYSVKRDATVRELARQAKVE 110
Query: 83 -PCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSL-------FQTVPKPEQF 134
+ L D + + I + +G+++ + + ++VP+ ++
Sbjct: 111 VQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASMCKTPGPIGVPDKVPAESVPEKDKR 170
Query: 135 HKYPEMDFGDPLIRWL-------------GGETEALIKLNERLSQEIESFKSGV--YLSN 179
+ + P + L GGETEAL +L + +S+ KS V +
Sbjct: 171 ERKDGKCYDPPTLDELKVRQEDLGECKFPGGETEALRRLQDYMSR-----KSWVCAFEKP 225
Query: 180 QVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYF 238
SP+ P T+ S +KFGCLS R F L +PP ++ GQL+WRE++
Sbjct: 226 NTSPNSLEPSTTVLSPYVKFGCLSARLFMAELKKVLAGQKHSQPP--VSLVGQLMWREFY 283
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-- 296
Y +A P +D+M N +CL +PW E++P ++L AW +G+TGYPFIDA+MRQLR+
Sbjct: 284 YCAAAAEPNFDKMVGNSVCLQVPW--ETNP---EHLAAWTHGRTGYPFIDAIMRQLRQEG 338
Query: 297 ---------------------------------LLDCTYCV------------------- 304
LLD + +
Sbjct: 339 WIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQFFR 398
Query: 305 --CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
PV FG++ DP+G YIK+YVPEL +FP IYEPWKA L Q+K CII KDYP RIV
Sbjct: 399 VYSPVAFGKKTDPEGKYIKKYVPELAKFPAGIIYEPWKANLETQKKLGCIIGKDYPHRIV 458
Query: 363 NHVQASLEN 371
H + S +N
Sbjct: 459 IHEEISKKN 467
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 197/442 (44%), Gaps = 96/442 (21%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
+G NR+ FLLE L DLD +S G +L +++G P +F ++ RE T+LCFE D E
Sbjct: 51 VGVNRYNFLLESLRDLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPYA 110
Query: 65 --------------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
GV + + + + C + L G KE
Sbjct: 111 RVRDARIQGLADEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLW-KEKAPAPGGR 169
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKLNERL--SQE 167
G E+ + VP + E+ F + P + GGETEAL +L+ L S+
Sbjct: 170 RGPACENAPSTDAATTAVPT------WQEVGFTEAPTTIFKGGETEALKRLSASLADSKW 223
Query: 168 IESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
+ FK P P + S +KFGCLS R F+ L + + H G
Sbjct: 224 VADFKK-----PDTDPAAFERPATTVLSPYVKFGCLSPRLFHARLLEVYRR-HRGHSQPP 277
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
++ GQL+WRE+FYT+ AH P + +M+ NP+C I W + E+ L AW+ +TG+P
Sbjct: 278 VSLRGQLLWREFFYTVGAHTPNFHRMDGNPLCKQIDW-----DDDEELLAAWREARTGFP 332
Query: 286 FIDAVMRQLRR-----------------------------------LLDCTYCVCPVNF- 309
+IDA+M QLR+ L+D + + N+
Sbjct: 333 WIDAIMTQLRQWGWMHHLARHSVACFLTRGDLYVSWERGMQVFEELLIDQDHYLNAANWM 392
Query: 310 --------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
G++ DP+G +I++++P L+ P +YIYEPW AP VQ +A
Sbjct: 393 WLSASAFFSQYFRVYSPISFGKKYDPEGKFIRKFLPVLKDMPSKYIYEPWTAPSEVQRRA 452
Query: 350 NCIISKDYPERIVNHVQASLEN 371
C+I +DYP +V+H S +N
Sbjct: 453 GCVIGRDYPHPVVDHALVSKQN 474
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 138/285 (48%), Gaps = 65/285 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GGE EAL +L L E +++ + L T S L+FGCLS R FY+
Sbjct: 215 WQGGEPEALARLERHL--ERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 272
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 273 QLTDLYEKIKKACPP--LSLHGQLLWREFFYCAATRNPNFDKMMGNPICVQIPW-----D 325
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L W NGQTG+P+IDA+M QLR
Sbjct: 326 KNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 385
Query: 297 ---LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CPV FGR+ DP+G YI+RY+P L+ FP
Sbjct: 386 EELLLDADWSVNAGMWMWLSCPSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPT 445
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+YI+EPW AP V + A CII K+Y +VNH AS N + +K+
Sbjct: 446 RYIHEPWNAPESVPKAAKCIIGKEYSLPMVNHAVASRINIERMKQ 490
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G N++RFLL+CL DLDR L+ +LF+++G P KL +E T L FE+
Sbjct: 46 FAGSSNVGINKWRFLLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEE 105
Query: 62 DCE 64
D E
Sbjct: 106 DPE 108
>gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens]
Length = 336
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 128/250 (51%), Gaps = 62/250 (24%)
Query: 184 DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSA 243
L PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT +
Sbjct: 5 SLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAAT 63
Query: 244 HNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------- 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 64 NNPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHL 118
Query: 297 ----------------------------LLDCTY---------------------CVCPV 307
LLD + C CPV
Sbjct: 119 ARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPV 178
Query: 308 NFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
FGRR DP G YI+RY+P+L+ FP +YIYEPW AP +Q+ A CII DYP IVNH +
Sbjct: 179 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 238
Query: 368 SLENKQYLKK 377
S N + +K+
Sbjct: 239 SRLNIERMKQ 248
>gi|379326851|gb|AFD01671.1| cryptochrome 1, partial [Parus major]
Length = 281
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 131/250 (52%), Gaps = 62/250 (24%)
Query: 184 DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSA 243
L PT S L+FGCLS R FY+ L D + + E P ++ GQL+WRE+FYT +
Sbjct: 16 SLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKENSSPP-LSLYGQLLWREFFYTAAT 74
Query: 244 HNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------- 296
+NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 75 NNPRFDKMEGNPICVQIPW--DKNPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHL 129
Query: 297 ----------------------------LLDCTY---------------------CVCPV 307
LLD + C CPV
Sbjct: 130 ARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPV 189
Query: 308 NFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
FGRR DP+G YI+RY+P LR FP +YIY+PW AP +Q+ A CII +YP+ +VNH +A
Sbjct: 190 GFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 249
Query: 368 SLENKQYLKK 377
S N + +K+
Sbjct: 250 SRLNIERMKQ 259
>gi|348680511|gb|EGZ20327.1| hypothetical protein PHYSODRAFT_492233 [Phytophthora sojae]
Length = 650
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 146/492 (29%), Positives = 212/492 (43%), Gaps = 123/492 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE-- 60
P M G NRF+F+LE ++DL L + G +L + +G + + ++L T L F+
Sbjct: 131 PKIMLCGVNRFQFMLESVSDLADALAARGSRLVVARGDGLQVLRRLLPAWRITHLFFDAA 190
Query: 61 -------QDCEGVKPYQSFPTGSHPP---------------RYQPCKTLLNF-RDLS--G 95
+D V + +H +P KT F R L+
Sbjct: 191 SEPFAIARDNRAVDLARHLGIQTHVTHGYTLYDLDAVIAGNEGEPPKTYTAFLRSLAMQS 250
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQT------VPKPEQFHKYPEM-DFG----- 143
PP+P + SE Q+ V ++ + PEQ PE+ DFG
Sbjct: 251 KPPKPLPTPEKLPTPTWMPSELYQQVVDYWKVRMKPEKIAGPEQQFTLPEVTDFGYAAPE 310
Query: 144 -DPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP---TSQSAALKFG 199
P I GGE AL L + E K + + SP T P TS S L FG
Sbjct: 311 RHPFI--YGGEQIALSILRDYCRNEGRVVK---FEKPKTSPAQTTPSASTTSLSPYLYFG 365
Query: 200 CLSVRRFYWALHDHFNTIHE----GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
C+S R F LH H +I E + ++ GQL+WRE+F+ NPY+D+ME++P
Sbjct: 366 CISPRTF---LH-HVQSIQEHHAKALSATPVSLDGQLLWREFFHCHGRANPYFDKMEESP 421
Query: 256 ICLNIPWLPESHPNKEKYLN-----------AWKNGQTGYPFIDAVMRQLR--------- 295
CL I W + P KE+ L AWK+G+TG+P+IDA+M QL+
Sbjct: 422 TCLQIDWRWHTIPEKEEDLTDDDKLARSQFEAWKDGRTGFPWIDAIMIQLKEEGWMHHLA 481
Query: 296 --------------------------RLLDCTYCV---------------------CPVN 308
RL+D + + P
Sbjct: 482 RHSVACFLTRGDLYISWVRGLEIFQERLIDHDWSINAGNWLWLSSSYFFSAYFRVYSPST 541
Query: 309 FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQAS 368
FG++ DP+G++I++YVP L + P++YIYEPW+AP+ VQ A C+I KDYP IV+H A
Sbjct: 542 FGKKWDPEGLFIRKYVPALSKMPVKYIYEPWRAPMTVQHAAGCLIGKDYPFPIVDHKIAM 601
Query: 369 LENKQYLKKEKA 380
+KK A
Sbjct: 602 RRCMAGMKKSYA 613
>gi|348681082|gb|EGZ20898.1| DNA photolyase [Phytophthora sojae]
Length = 516
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 200/460 (43%), Gaps = 99/460 (21%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF--- 59
P M G RF+F+LE + DL L+ G +L + +G + + ++L T L F
Sbjct: 46 PQIMRCGARRFQFVLESVEDLADALEERGSRLVVAKGDGLQVLRRLLPAWGITHLYFDAV 105
Query: 60 ------EQDCEGVKPYQSFPTGSHPPR-YQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFG 112
E+D + +S +H R Y+ G P+ T+
Sbjct: 106 SEPYAVERDNRALALAKSLGVQTHVTRGYELYNMDAVIAGNGGRAPK----------TYQ 155
Query: 113 TMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFK 172
++ ++ + +P PE P + I GGE +AL L E + E K
Sbjct: 156 MFLRAVAKQAKPAEPLPAPETL-PAPVIPEKHSFI--YGGEKKALSALKEYFADEERVAK 212
Query: 173 SGVYLSNQVSPDLTGPP---TSQSAALKFGCLSVRRFYWALHDHFNT-IHEGRPPSHFNI 228
+ SP T P T S L +GCLS R FY L D + +PP ++
Sbjct: 213 ---FEKPNTSPAQTPPSPATTILSPHLFYGCLSPRTFYHQLRDILQRHKNPSKPP--VSL 267
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN-----------AW 277
GQL+WRE+++ NPY+D+ME++P CL + W + P KE+ + AW
Sbjct: 268 EGQLLWREFYHCHGHANPYFDKMEESPTCLQVDWRWHTIPEKEEDMTDDDKLARSQFEAW 327
Query: 278 KNGQTGYPFIDAVMRQLR-----------------------------------RLLDCTY 302
K G+TG+P+IDA+M QL+ RL+D +
Sbjct: 328 KEGRTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDW 387
Query: 303 CV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
+ P+ FG++ DP+G +IK+Y+P L++FP +YIYEPWKA
Sbjct: 388 SLNAGNWLWLSSSYFFTAYFRVYSPIAFGKKWDPEGKFIKKYIPALKKFPAKYIYEPWKA 447
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
PL +Q A C I KDYP IV H +A + +K+ AN
Sbjct: 448 PLTLQHAAGCRIGKDYPSPIVAHKEAMGRCLEGMKRSYAN 487
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/456 (27%), Positives = 204/456 (44%), Gaps = 90/456 (19%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE--LNFTKLCFEQDCEG 65
+G NR RFL + L +LD L+ +L++++G I KL E + F L + D +
Sbjct: 51 VGCNRLRFLFQSLKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDADL 110
Query: 66 VKPYQSFPTGSHPPRYQPCKTLLN-FRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE--V 122
VK + K + + D + + + I + F ++ +Q + +
Sbjct: 111 VKQDEVIEEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDII 170
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLI-------------RWLGGETEALIKLNERLS--QE 167
+ + V + Y + P + ++ GGE+E L +L+ ++ Q
Sbjct: 171 QISKGVSDECKASDYDSQGYDIPSLEEFGVNESELSECKYPGGESEGLKRLDVYMAKKQW 230
Query: 168 IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN 227
+ +F+ N + P T S + GCLS + FY L N PP +
Sbjct: 231 VCNFEKPKSSPNSIEP----STTVLSPYISHGCLSAKLFYHKLKQVENGSKHTLPP--VS 284
Query: 228 ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFI 287
+ GQL+WRE++YT + +D+M N +C IPW + +L AW G+TGYPF+
Sbjct: 285 LMGQLMWREFYYTAGSGTENFDKMVGNSVCTQIPW-----KKNDAHLKAWAEGKTGYPFV 339
Query: 288 DAVMRQLRR-----------------------------------LLDCTYCV-------- 304
DA+MRQL++ LLD + +
Sbjct: 340 DAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWL 399
Query: 305 -------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANC 351
PV FG++ D DG+YI++YVPEL+++P ++IYEPWKAP GVQ+ A C
Sbjct: 400 SASAFFYKYYRVYSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGC 459
Query: 352 IISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
II + YP RIV+H + +N ++K A +NK+
Sbjct: 460 IIGEGYPNRIVDHDKVHKDN---IQKMNAAYKVNKE 492
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 200/494 (40%), Gaps = 145/494 (29%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR RFLL+ L DLD L++ G L +++G P ++ R +L E D E
Sbjct: 52 VGANRVRFLLQSLTDLDASLRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTE--- 108
Query: 68 PYQSFPT-----------------GSHP-----------PRYQPCKTLLNFRDLSG---- 95
PY S SH P+ P + +F ++G
Sbjct: 109 PYASARDAAVRDAAKRVGAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFLKIAGSCGA 168
Query: 96 -------LPPRPKEDIDFR-HVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM--DFGDP 145
P D + HV M E + + VP E+ YPE+ D G P
Sbjct: 169 VAKPAPPPPASMPGSPDGKSHVELVAMIEDVVSSAEV--GVPTLEEL-GYPELPDDEGFP 225
Query: 146 LIRWLGGETEALIKLNERLSQE--IESFK----SGVYLSNQVSPD--------------- 184
GGETE L +L LS++ I F+ S L V D
Sbjct: 226 A---RGGETEGLDRLRRMLSRKTWIAEFQKPMTSPTSLWAVVGADGKTQKPANPFEAASK 282
Query: 185 ------------LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
L T+ S LKFGC+S R FY L D N ++ GQL
Sbjct: 283 ASKSKTVGAEAFLAPSTTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQL 342
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
+WRE++Y + P Y +ME NPIC IPW + E+ L AW+ G+TG+P+IDA M
Sbjct: 343 LWREFYYLAAFGTPNYHKMEGNPICRQIPWTWD-----EERLAAWEEGRTGFPWIDACMH 397
Query: 293 QLRR-----------------------------------LLDCT-----------YCVC- 305
QLR+ L+D C C
Sbjct: 398 QLRQEGWLHHLARHAVACFLTRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMWLSCSCF 457
Query: 306 ---------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV+FG++ D DG +I++Y+P L+ P +YIYEPW AP VQ+KA C+I D
Sbjct: 458 FYQYFRVYGPVSFGKKYDKDGTFIRKYLPVLKDMPAKYIYEPWTAPADVQKKAGCVIGVD 517
Query: 357 YPERIVNHVQASLE 370
YP IV+H AS E
Sbjct: 518 YPPPIVDHAVASKE 531
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 190/440 (43%), Gaps = 91/440 (20%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ +G NR +FLLE L DLDR L S G +L +V G+PI + +L + KLCFE D
Sbjct: 48 PGSARVGINRIQFLLESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFD 107
Query: 63 CEGVKPYQSFPTGSHPPR-----YQPCKTLLNFRDLSGLPPRPKEDIDFRH--------- 108
E + H + P + DL K + F+
Sbjct: 108 TEPYALDRDAKIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPAT 167
Query: 109 --VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQ 166
+ G + ++ + VP P + DF + + GGET AL +L + L+
Sbjct: 168 KPIGNGPSAIPPTGDLHGIKVVPVP-TLEELGYADFHEDFSPFRGGETVALTRLEDSLAN 226
Query: 167 E--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
E + F+ + + T S LKFGCLS R Y + + ++ P
Sbjct: 227 EKWVCEFEKP---KGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVYSRAKSFTSPP 283
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
++ QL+WRE+FYT + +D+M NPIC IPW + ++ L+AW++G+TGY
Sbjct: 284 -VSLEAQLLWREFFYTAAYATANFDKMVGNPICKQIPW-----KDDDELLSAWRDGRTGY 337
Query: 285 PFIDAVMRQLRR-----------------------------------LLDCTYCV----- 304
P+IDA M QLR+ L+D + +
Sbjct: 338 PWIDAAMTQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNW 397
Query: 305 ----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
P+ F ++ D G YIK ++PE +IYEPWKAP +Q K
Sbjct: 398 LWLSASAFFNQYHRIYSPITFAKKYDRQGNYIKHFLPE-------FIYEPWKAPAEIQRK 450
Query: 349 ANCIISKDYPERIVNHVQAS 368
A CII KDYP +++H AS
Sbjct: 451 AKCIIGKDYPTPVLDHAAAS 470
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 142/287 (49%), Gaps = 69/287 (24%)
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGE+EAL +L L ++ + SF + P TG S L+FGCLS R F
Sbjct: 211 WQGGESEALSRLERHLERKAWVASFGKPKMTPQSLLPSQTG----LSPYLRFGCLSTRLF 266
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L+D + I + PP ++ GQ++WRE+FY + NP +D+M NPIC+ +PW +
Sbjct: 267 YYQLNDLYRKIKKAVPP--LSLHGQVLWREFFYCAATKNPNFDRMIGNPICVQVPW--DK 322
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P + L W NGQTG+P+IDA+M QLR
Sbjct: 323 NP---EALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 379
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGR+ DP+G YI++Y+P L+
Sbjct: 380 VFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRKYLPVLKNM 439
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YI+EPW P VQ+ A C I DYP ++NH S N + +K+
Sbjct: 440 PTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHSVVSKHNIERMKQ 486
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F ++G N++RFLL+CL DLDR L +LF+++G P I KL +E T L FE+
Sbjct: 42 FANASNVGINKWRFLLQCLEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEE 101
Query: 62 DCE 64
D E
Sbjct: 102 DPE 104
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 141/473 (29%), Positives = 207/473 (43%), Gaps = 113/473 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L +++G P + + +E +LCFE D
Sbjct: 53 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYD 112
Query: 63 CE--------GVKPYQS------FPTGSHPPRYQPCKTL-----------LNFRDLSGLP 97
+ VK Y S F SH + P + +F ++G P
Sbjct: 113 TDPYYKALDVKVKDYASSTGVEVFSPVSH-TLFNPADVIEKNGGKPPLSYQSFLKIAGEP 171
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
K ++ + + + + +S VP E+ Y + D + GGE+EAL
Sbjct: 172 SCAKSELVMSYSSLPPVGDVGNLGIS---EVPSLEELG-YRDDDEQADWTPFRGGESEAL 227
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALH 211
+L + +S + +++N P L T S LKFGCLS R FY L
Sbjct: 228 KRLTKSISDK-------AWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 280
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW E H
Sbjct: 281 NIYKDVKKHTSPP-VSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW-NEDHA--- 335
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL-----------------------------------RR 296
L AW++G+TGYP+IDA+M QL R
Sbjct: 336 -MLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERL 394
Query: 297 LLDCTYCV---------CPVNFGRRLDPDG----------IYIKRYVPE---LRQF---- 330
L+D + + C F + + + + +Y P+ +R F
Sbjct: 395 LIDSDWAINNGNWMWLSCSSFFYQAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVL 454
Query: 331 ---PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
P QYIYEPW APL VQ KANCI+ KDYP+ +V H AS E K+ + + A
Sbjct: 455 KDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYA 507
>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
Length = 431
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 147/289 (50%), Gaps = 67/289 (23%)
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+GGETEAL +++ + + + +F+ + L T S LKFGCLS R FY
Sbjct: 106 IGGETEALKRMDASIQDQKWVAAFEKP---KGDPTAFLKPATTVLSPYLKFGCLSSRLFY 162
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
L + + + + P ++ GQL+WRE+FYT++ P +DQME NPIC IPW
Sbjct: 163 QRLQEVYRKVKKHTEPP-VSLEGQLLWREFFYTVAYGTPKFDQMEGNPICKQIPW----- 216
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
+ + L+AW++GQTGYP+IDAVM QLR+
Sbjct: 217 NDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLARHAVACFLTRGDLFVHWEKGRDV 276
Query: 297 ----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
L+D + + P++FG++ DPDG Y++ ++P L+ P
Sbjct: 277 FDRLLIDSDWAINNSNWMWLSCSAFFSQYHRIYSPISFGKKYDPDGKYVRYFLPVLKDMP 336
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
+YIYEPW AP+ VQ KA CII KDYPE +V+H+ AS K+ + A
Sbjct: 337 KEYIYEPWTAPIDVQRKAKCIIGKDYPEPLVSHLGASKNCKEKIAAAYA 385
>gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 438
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 142/288 (49%), Gaps = 70/288 (24%)
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGET L +L E + + I F + N + P TG S GCLSVR F
Sbjct: 117 WRGGETTGLQRLEEHMKNQGWIAKFTKPRTIPNSLLPSTTG----LSPYFSLGCLSVRMF 172
Query: 207 YWALHD-HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
++ L + + + PP ++ GQL+WRE+FYT+++ P + +M NPICL I W
Sbjct: 173 FYRLSKIYAQSKNHSLPP--VSLQGQLLWREFFYTVASATPNFTKMVGNPICLQIEW--- 227
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------------------------- 296
+ + EK L+ WK QTG+P+IDA+M QLR+
Sbjct: 228 -YEDAEK-LHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGM 285
Query: 297 ------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
LLD Y + CPV FG+R DP+G YI++Y+P L+
Sbjct: 286 KVFEELLLDSDYSINAGNWMWLSASAFFHQYSRIFCPVRFGKRTDPEGHYIRKYLPVLKN 345
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
FP +YIYEPW AP Q +A CII K+YP +VNH + S N Q +K+
Sbjct: 346 FPSKYIYEPWTAPAEAQREAGCIIGKEYPFPMVNHKEVSDNNLQLMKQ 393
>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 568
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/509 (26%), Positives = 213/509 (41%), Gaps = 141/509 (27%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P M G NRF+F+LE +ADL L G +L + +G I + +++ + T + F+
Sbjct: 44 PQIMRCGANRFQFVLESVADLSGALAERGSKLVVAKGDSIQVLRRVLPAWDITHMFFDGV 103
Query: 63 CE---------GVKPYQSFPTGSHPPRY---------------QPCKTLLNFRDLSGLPP 98
CE + +S +H + + KT F G P
Sbjct: 104 CEPYAVERDDRALALAKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQP 163
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKY--------------------- 137
P+E I T T+ ++ L++ + + K
Sbjct: 164 TPREPIP----TPETLPSPTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAG 219
Query: 138 PEMDFGDPLIRWLGGET---EALIKLNERLSQEI------ESFKSGVYLSNQVSPDLTGP 188
PE DF P + + G ET + I E+ + E+ + + ++ + SP P
Sbjct: 220 PEHDFTLPDLTYFGYETPEKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQI-P 278
Query: 189 PTSQSAALK----FGCLSVRRFYWALHDHFNTIHEGR-----PPSHFNITGQLIWREYFY 239
PT + L +GCLS R FY +I GR PP ++ GQL+WR++++
Sbjct: 279 PTPSTTVLSPYMFYGCLSPRTFY----HQVRSIQRGRKKVSVPP--VSLIGQLLWRDFYH 332
Query: 240 TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN-----------AWKNGQTGYPFID 288
NPY+D+ME++ CL + W + P E+ L+ AW++G+TG+P+ID
Sbjct: 333 CHGRANPYFDKMEESSTCLQVNWRYHTIPENEEDLSDDDKLARSQFEAWRDGRTGFPWID 392
Query: 289 AVMRQLR-----------------------------------RLLDCTYCV--------- 304
A+M QL+ RL+D + +
Sbjct: 393 AIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLS 452
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P++FG++ DP+G++IK+Y+P L+ FP +YIYEPWKAPL +Q A C
Sbjct: 453 SSYFFTAYFRVYSPISFGKKSDPEGLFIKKYIPALKNFPAKYIYEPWKAPLTLQHAAGCR 512
Query: 353 ISKDYPERIVNHVQASLENKQYLKKEKAN 381
I KDYP I+ H A + LK AN
Sbjct: 513 IGKDYPTPIIEHKTAMKRCVEGLKMSYAN 541
>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
Length = 486
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 194/442 (43%), Gaps = 99/442 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F ++G R+ FLLE L DLD QL+ G +L++++G P K +E T+L +E
Sbjct: 43 FAKPENVGVLRYNFLLESLKDLDEQLRGLGSRLYVLRGKPEEQLPKKFKEWKVTRLTYEL 102
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
D E PY RD + K +++ G M +
Sbjct: 103 DTE---PYA------------------RVRDAAINDLAKKHNVEVI-AEAGHMLHDPESY 140
Query: 122 VSLFQTVPKPEQFHKY-----PEMDF----GDPLIRWLGGETEALIKLNERLSQE--IES 170
+ K Q Y EM + ++ + GGE EAL +L + ++ I +
Sbjct: 141 LKKCGGASKDRQDKSYDVPTLKEMGYSPIKAPQMVLFPGGEREALKRLEHFIKKKNWIAT 200
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITG 230
F+ + PD TG S +K GCLSVR+F++ + ++ + P ++ G
Sbjct: 201 FEKPKTNPAALDPDTTG----LSPYMKMGCLSVRKFWYDVQKVYDEKKDHSTPPE-SLHG 255
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
QL++RE F+ +D+M+ N IC I W EK+L+AW+N +TGYP+IDA
Sbjct: 256 QLLFRELFHLCGYAVKNFDKMKGNRICRQIDW-----DYSEKFLDAWENSKTGYPWIDAC 310
Query: 291 MRQL-----------------------------------RRLLDCTY------------- 302
M QL + L+D +
Sbjct: 311 MAQLRHEGWMHHLARHAVACFLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMWLSCS 370
Query: 303 --------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
P+ FG++ D +G +I++Y+P L+ P +YIYEPWKAP VQ+KA CII
Sbjct: 371 SFFYQYFRVYSPIGFGQKYDKEGAFIRKYLPVLKDMPKKYIYEPWKAPKEVQQKAKCIIG 430
Query: 355 KDYPERIVNHVQASLENKQYLK 376
KDYPE IV+H S NK +K
Sbjct: 431 KDYPEPIVDHSDVSETNKDRMK 452
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/456 (29%), Positives = 192/456 (42%), Gaps = 132/456 (28%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + I
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKI 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
P+ +KNP + L W
Sbjct: 277 ----------------------------PW----DKNP----------------EALAKW 288
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 289 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 348
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 349 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 408
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 409 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 444
>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Nomascus
leucogenys]
Length = 543
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 178/406 (43%), Gaps = 102/406 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 83 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 142
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 143 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 202
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 203 EL---PKKPVGSVTSQQME--SCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV--WQG 254
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L++ L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 255 GETEALARLDKHL--ERKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLW 312
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 313 DLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DRNPEA- 368
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
L W G+TG+P+IDA+M QLR+
Sbjct: 369 --LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 426
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIK 321
LLD + C CPV FGRR DP G YI+
Sbjct: 427 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 472
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 200/468 (42%), Gaps = 103/468 (22%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR FLLECL DLD+QL+ +LF+++G+P+ R+ + L FE D E
Sbjct: 54 VGVNRMNFLLECLQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPYA 113
Query: 68 PYQSFPTG------SHPPRYQPCKTLLNFRDLS---GLPPRPKEDIDFRHVTFGTMSESL 118
+ R + TL + D+ G P P F + ++E L
Sbjct: 114 KQRDTQVRRLCAELGIEVRTRATHTLYDPEDIRRELGDRPTPLTYKSF----YAFVTERL 169
Query: 119 QREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL----------------GGETEALIKLNE 162
+ +S P P + P++D + L GGETEAL ++
Sbjct: 170 GQPMSALDA-PAPASGFQTPDVDLDTYTVPSLSELEAYQGLEVETPFRGGETEALRRMEN 228
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
L + + +S + + T S KFGCLS R F + RP
Sbjct: 229 FLRERADEVRSFAKPATSPTAWPVASTTQLSPYFKFGCLSPRLF-------VERVRSLRP 281
Query: 223 PSH--FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
++ GQ+ WRE+F ++ P++ QM+ NPIC IPW + +Y AW+
Sbjct: 282 LQQPPVSLIGQIWWREFFTYVAYVTPHFHQMQGNPICRQIPW--REAADDARY-RAWEEA 338
Query: 281 QTGYPFIDAVMRQLRR-----------------------------------LLDCTYCV- 304
+TGYP+IDA M QLR+ L+D Y +
Sbjct: 339 RTGYPWIDACMVQLRQEGWLHHLARHAVACFLTRGDLWVSWERGRETFDRLLVDADYSLN 398
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P++F ++ DP+G Y++ ++P L++ P +YIY PW AP+
Sbjct: 399 NANWLWLSSSAFFHQYYRVYSPISFPQKYDPNGEYVRHFLPVLKEMPSKYIYTPWLAPVV 458
Query: 345 VQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERI 392
VQ+KA CII +DYP IV+H EN + +++ ++ P+R+
Sbjct: 459 VQKKAKCIIGEDYPHPIVDHAVVMRENMRRMREA-----LDAGAPQRV 501
>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 656
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 208/496 (41%), Gaps = 131/496 (26%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFE-- 60
P M G NRF+FLLE ++DL L + G +L + +G + + ++L + L F+
Sbjct: 137 PKIMLCGVNRFQFLLESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAA 196
Query: 61 -------QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHV 109
+D V + +H TL + + +G PP+ R +
Sbjct: 197 SEPFAIDRDNRAVALARQLGVETHVTH---GYTLYDLDAVIAGNNGEPPKTYTAF-LRAL 252
Query: 110 TFGTM------------------SESLQREVSLFQ------TVPKPEQFHKYPEM-DFG- 143
SE Q+ + +Q ++ PEQ PE+ DFG
Sbjct: 253 AMQPKPPKPLPTPEKVPAPVYLPSELYQQVIDYWQNRLKPDSIAGPEQQFTLPEVTDFGF 312
Query: 144 -----DPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP---TSQSAA 195
P I GGE AL L + E K + + SP T P TS S
Sbjct: 313 VAPERHPFI--YGGEQIALGILRDYCRNEGRVVK---FEKPKTSPAQTTPSASTTSLSPY 367
Query: 196 LKFGCLSVRRFYWALHDHFNTIHE----GRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
L FG +S R F LH H I E + ++ GQL+WRE+F+ N Y+D+M
Sbjct: 368 LYFGSISPRTF---LH-HVRGIQEHHAKALSATPVSLDGQLLWREFFHCHGRANAYFDKM 423
Query: 252 EKNPICLNIPWLPESHPNKEKYLN-----------AWKNGQTGYPFIDAVMRQLR----- 295
E++P CL I W + P +E+ + AW +GQTG+P+IDA+M QL+
Sbjct: 424 EESPTCLQIDWRWHTIPEREEDMTDDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWM 483
Query: 296 ------------------------------RLLDCTYCV--------------------- 304
RL+D + +
Sbjct: 484 HHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASYFFSAYFRVY 543
Query: 305 CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P FG++ DP+G++I++YVP L + P++YIYEPWKAP+ VQ A C+I KDYP IV+H
Sbjct: 544 SPSTFGKKWDPEGLFIRKYVPALSKMPVKYIYEPWKAPMTVQHAAGCLIGKDYPFPIVDH 603
Query: 365 VQASLENKQYLKKEKA 380
A + +KK A
Sbjct: 604 KIAMRRSMAGMKKSYA 619
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 132/510 (25%), Positives = 202/510 (39%), Gaps = 143/510 (28%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--- 64
+G NR RFLL+ L DLD QL++ G L ++ G P + + ++ + +E D E
Sbjct: 56 VGANRMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYA 115
Query: 65 --------------GVKPYQSFP-------------TGSHPPRYQPCKTLLNFRDLSGLP 97
GV+ + + G+ P YQ D G P
Sbjct: 116 KIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQ---GFFKIVDKMGAP 172
Query: 98 PRPKEDIDFRHVTFGTMSE---SLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGET 154
P + ++ +F + E +L + V+ +P E P D D +GGET
Sbjct: 173 NAPIDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGD--DEGFPGVGGET 230
Query: 155 EA------------LIKLNERLSQEIESFKSGVYLSNQVSPD------------------ 184
E I E+ S + G+ S + P
Sbjct: 231 EGLRRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTS 290
Query: 185 -----LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH--EGRPPSHFNITGQLIWREY 237
+ T+ S +KFGC+S R FY L + + +PP+ ++ GQL+WRE+
Sbjct: 291 GAEALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPT--SLMGQLMWREF 348
Query: 238 FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR- 296
+Y ++A +D+ME N IC IPW + + AW+N QTG+P+IDA M QLRR
Sbjct: 349 YYLVAAGTKNFDKMEGNAICRQIPWKKD-----RELFAAWENAQTGFPWIDAAMTQLRRE 403
Query: 297 ----------------------------------LLDCTYCV------------------ 304
L+D + +
Sbjct: 404 GWLHHLARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFYQYF 463
Query: 305 ---CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
P+ F ++ D DG Y++ Y+P L+ P +Y+YEPW APL VQ+KA C++ DYP I
Sbjct: 464 RVYSPIAFAKKYDKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPI 523
Query: 362 VNHVQASLE-----NKQYLKKEKANCIINK 386
V+H AS Y + AN + K
Sbjct: 524 VDHSAASKRCVDDIATAYAAHKDANAVAGK 553
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 143/291 (49%), Gaps = 64/291 (21%)
Query: 137 YPEMDFGD-PLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAA 195
+ EM F + P + GGETEAL +L E ++ + S S S T+ S
Sbjct: 242 WQEMGFKEAPTAIFKGGETEALKRL-EHYMKDTKWXASFEKPSTDPSAFTEPSTTALSPY 300
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
LKFGCLS R F+ L D + +H ++ GQL+WRE+FYT+ +H P +D++ NP
Sbjct: 301 LKFGCLSARFFHQRLLDVYR-LHPKHSQPPMSLRGQLLWREFFYTLGSHTPNFDRIAGNP 359
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------- 296
IC I W +++P L AW++G TGYP+IDA M QLR
Sbjct: 360 ICRQITW--DTNP---ALLKAWRDGATGYPWIDAAMTQLREWGWMHHLARHSVACFLTRG 414
Query: 297 ----------------LLDCTYCV---------------------CPVNFGRRLDPDGIY 319
LLD Y + PV FG++ D +G Y
Sbjct: 415 DLYLSWESGKEVFEELLLDADYFINAANWMWLSASAFFAQYFRVYSPVVFGKKYDKEGAY 474
Query: 320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLE 370
I++++P L+ P +YIYEPW AP VQ++ANCII +DYP IV+H AS E
Sbjct: 475 IRKFLPVLKDMPAKYIYEPWTAPKEVQQRANCIIGRDYPAPIVDHAVASKE 525
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NR++FLLE L+DL+ L S G QL +++G+P + ++ R+ + KLC+E D E
Sbjct: 95 VGVNRYQFLLESLSDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTE 151
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats.
Identities = 130/490 (26%), Positives = 193/490 (39%), Gaps = 144/490 (29%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G NR RFLL+ L DLD QL++ G L ++ G P + + ++ + +E D E
Sbjct: 1143 VGANRMRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIE--- 1199
Query: 68 PYQSFP---------------------------------TGSHPPRYQPCKTLLNFRDLS 94
PY G+ P YQ D
Sbjct: 1200 PYAKIRDAAVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQ---GFFKIVDKM 1256
Query: 95 GLPPRPKEDIDFRHVTFGTMSE---SLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
G P P + ++ +F + E +L + V+ +P E P D D +G
Sbjct: 1257 GAPNAPIDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGD--DEGFPGVG 1314
Query: 152 GETEAL------------IKLNERLSQEIESFKSGVYLSNQVSPD--------------- 184
GETE L I E+ S + G+ S + P
Sbjct: 1315 GETEGLRRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDA 1374
Query: 185 -------LTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIH--EGRPPSHFNITGQLIW 234
L P T+ S +KFGC+S R FY L + + +PP+ ++ GQL+W
Sbjct: 1375 STSGAEALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPT--SLMGQLMW 1432
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
RE++Y ++A +D+ME N IC IPW + AW+N QTG+P+IDA M QL
Sbjct: 1433 REFYYLVAAGTKNFDKMEGNAICRQIPW-----KKDRELFAAWENAQTGFPWIDAAMTQL 1487
Query: 295 -----------------------------------RRLLDCTYCV--------------- 304
R L+D + +
Sbjct: 1488 RREGWLHHLARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAFFY 1547
Query: 305 ------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
P+ F ++ D DG Y++ Y+P L+ P +Y+YEPW APL VQ+KA C++ DYP
Sbjct: 1548 QYFRVYSPIAFAKKYDKDGQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYP 1607
Query: 359 ERIVNHVQAS 368
IV+H AS
Sbjct: 1608 APIVDHSAAS 1617
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 196/452 (43%), Gaps = 100/452 (22%)
Query: 8 IGYNRFRFLLECLADLDRQL-KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-- 64
+G NR +FL++ L DL++ L K + L I+ G P IF+KL E KL FE D E
Sbjct: 52 VGTNRMKFLIDSLIDLNKSLQKEYDSNLVILYGQPAEIFEKLAHESE--KLYFELDTEPY 109
Query: 65 ----GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSES-LQ 119
K Q TLL DL+ K DF+ ES L
Sbjct: 110 AQDRDRKVVQICEKAGVQVHRNTGHTLLKLSDLADAGETCKNYGDFQKFMRDKKIESPLD 169
Query: 120 REVSLFQTVPKPEQFHKYPEMDFG--------------DPLIRWLGGETEALIKLNERLS 165
+ L Q E+ K+ ++++ D ++GGET+AL + E +
Sbjct: 170 KPKELPQLPNNYEKLLKHLKIEYSNDVPSISDLDRNEKDVTTHFIGGETKALEIMEEYIK 229
Query: 166 QE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG--- 220
+ + SF N + P T+ S LKFGCLS+R F H+ ++
Sbjct: 230 DKRRVNSFSKPFTSPNSLKP----STTALSPYLKFGCLSIRLF----HEKVKSVLRSDCT 281
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
+PP ++ GQ+ WRE+FY S + M+ NP+C I W + E+ + W+ G
Sbjct: 282 QPP--VSLIGQIYWREFFYAKSYTVKNFHFMQGNPLCKQINWNKD-----EEIIKKWEMG 334
Query: 281 QTGYPFIDAVMRQLRR-----------------------------------LLDCTYCV- 304
QTG+P IDAVM QLR+ LLD Y +
Sbjct: 335 QTGFPAIDAVMNQLRQEGWMHHLARHLVACFLTRGHLYQHWERGRDVFDKYLLDADYALN 394
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
PV+F ++ D +G +I++YVP L+ FP +YIYEP KAP+
Sbjct: 395 NANWMWLSCSAFFSQYWKVYSPVSFFQKTDKNGDFIRKYVPALKHFPSEYIYEPSKAPVA 454
Query: 345 VQEKANCIISKDYPERIVNHVQASLENKQYLK 376
VQ++A CII +DYP IV++ N LK
Sbjct: 455 VQKRAKCIIGEDYPFPIVDYKAEQALNINKLK 486
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 195/451 (43%), Gaps = 79/451 (17%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD L+ G +L +++G P + + C +++
Sbjct: 200 PGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQ----------CLKKN 249
Query: 63 CEGVKPYQSFPTGSHP----------PRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFG 112
+ F SH +P + +F L+G P +
Sbjct: 250 YASAAGIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFLKLAGQPSWASSPLSTTLSWLP 309
Query: 113 TMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFK 172
+ + E+S TV + Y E+ D L + GGE+EAL +L E S +
Sbjct: 310 PVGDVGTCEISNVPTVKE----LGYEEIG-QDELTPFKGGESEALKRLRE-------SIR 357
Query: 173 SGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF 226
+++N P L T S LKFGCLS R FY L D + + P
Sbjct: 358 DKDWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNVKRHTSPP-V 416
Query: 227 NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
++ GQL+WR++FYT+ P +D+M+ N IC IPW + ++ L AW+ +TGYP+
Sbjct: 417 SLVGQLLWRDFFYTVGFGTPNFDRMKGNRICKQIPW-----NDDDELLAAWREARTGYPW 471
Query: 287 IDAVMRQLRR-------LLDCTYCVCPVN------------FGRRLDPDGIYIKR----- 322
IDA+M QLR+ C C F R L I
Sbjct: 472 IDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLW 531
Query: 323 -------YVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
Y P++ P +YIYEPW AP +Q KA CII KDYP+ +V H A E K+ L
Sbjct: 532 LSCSSFFYQPDM---PKEYIYEPWTAPPSIQXKAKCIIGKDYPKPVVCHDSAXKECKRKL 588
Query: 376 KKEKA-NCIINKDYPERIVNHVQASLENKQN 405
+ A N ++ E + ++ LE +N
Sbjct: 589 AEAYALNKRLDGSVTEEDLKKLRRKLEEDEN 619
>gi|357624446|gb|EHJ75225.1| (6-4) photolyase [Danaus plexippus]
Length = 370
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 69/283 (24%)
Query: 151 GGETEALIKLNERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE+E L +L+ ++ Q + +F+ N + P T S + GCLS + FY
Sbjct: 81 GGESEGLKRLDVYMAKKQWVCNFEKPKSSPNSIEPSTT----VLSPYISHGCLSAKLFYH 136
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L N PP ++ GQL+WRE++YT + +D+M N +C IPW
Sbjct: 137 KLKQVENGSKHTLPP--VSLMGQLMWREFYYTAGSGTENFDKMVGNSVCTQIPW-----K 189
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ +L AW G+TGYPF+DA+MRQL++
Sbjct: 190 KNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVF 249
Query: 297 ---LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + + PV FG++ D DG+YI++YVPEL+++P
Sbjct: 250 EDFLLDYDWSLNAGNWMWLSASAFFYKYYRVYSPVAFGKKTDKDGLYIRKYVPELKKYPS 309
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
++IYEPWKAP GVQ+ A C+I + YP RIV+H + +N Q +
Sbjct: 310 EFIYEPWKAPKGVQKTAGCVIGEGYPNRIVDHDKVHKDNIQKM 352
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 201/460 (43%), Gaps = 114/460 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ- 70
R RFLLEC++DLD+ L+ G +L++ G P+ + +L +E T + E D G +PY
Sbjct: 65 RARFLLECISDLDKSLRERGSRLYVATGDPLEVLPELWKEWGVTHVTHEADETG-EPYAV 123
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT-FGTMSESLQREVSLFQ--- 126
+ G + ++ FR + RP ++ +V G S+ +S FQ
Sbjct: 124 ARDEGVRSVAKKNGVQVMEFRSET---LRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLL 180
Query: 127 ------TVPKPEQF---HKYPEMDFGDPLIRWL------------------GGETEALIK 159
+P P ++P++ D ++L GGET AL +
Sbjct: 181 GRIDGGNIPLPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQ 240
Query: 160 LNERLSQE---IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH--- 213
L ++ SF+ +VS T T S L GCLS R+ + A+ D
Sbjct: 241 LQSTVTARPDWTASFEKPKTSCTEVS---TPSTTVLSPYLSLGCLSPRKAWHAVADANRK 297
Query: 214 -FNTIHEGRPPSHFNITGQLIWREY----FYTMSAHNP-YYDQMEKNPICLNIPWLPESH 267
+ +++ +PP ++ GQL+WR++ ++ +A +P + +M+ NP C N+PW S
Sbjct: 298 ASSKVNKTKPP--VSLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPW--SSD 353
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------------- 295
P K L AWK+G+TG+P+IDA M QLR
Sbjct: 354 P---KLLKAWKDGKTGFPWIDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADH 410
Query: 296 ---RLLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
LLD Y C PV F ++ D +G YI+++VPEL P
Sbjct: 411 FEGELLDADYALNNFNWLWLSCSGFFYQYFRCYSPVAFQKKNDVNGNYIRKWVPELAGLP 470
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
+YIYEPWKAP V A + +YP IV+H S EN
Sbjct: 471 AKYIYEPWKAPSSVLNAAGIKLGDNYPNPIVDHAFVSKEN 510
>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 606
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 187/447 (41%), Gaps = 119/447 (26%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +I RFLL+CL DLD L+ +LF+++G P ++F +L +E ++L FE D
Sbjct: 10 GTTYISEKNLRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDS 69
Query: 64 E-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFRDL 93
E GV+ G PP Y+ +TL++ D
Sbjct: 70 EPFGKERDAAIKKLAKEAGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMDP 129
Query: 94 SGLPPRP-KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGG 152
+P ++ R VT +SE + VP E+ E G P W GG
Sbjct: 130 PEMPVEMLSGNLMGRCVT--PISEDHGEKFG----VPSLEELGFDIE---GLPSAVWPGG 180
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
ETEAL ++ L E +++ + + L PT S L+FGCLS R FY+ L D
Sbjct: 181 ETEALTRIERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTD 238
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+ + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 239 LYRKVKKNTSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPW-----DRNME 292
Query: 273 YLNAWKNGQTGYPFIDAVMRQLRR-----------------------------------L 297
L W +TG+P+IDA+M QLR+ L
Sbjct: 293 ALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 352
Query: 298 LDCTY---------------------CVCPVNFGRRLDPDGIYIKRYV----------PE 326
LD + C CPV FGRR DP+G +I R + P
Sbjct: 353 LDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFISRSLLASSSDGGRSPS 412
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCII 353
+R P + P + + CI+
Sbjct: 413 VRLLPRPALSTP-----SISDSQRCIV 434
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 190/457 (41%), Gaps = 124/457 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+ NR+ FLLE L DL R ++ G +L +++G P +F ++ RE T+LCFE D E
Sbjct: 51 VSVNRYNFLLESLEDLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTE--- 107
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTF---GTMSESLQREVSL 124
PY R + L + + P D + G ++Q L
Sbjct: 108 PYAKV-------RDAAVRRLAAEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKL 160
Query: 125 FQTV-------------------------PKPEQFHKYPEMDFGDP-LIRWLGGETEALI 158
V P + E+ F +P L + GGETEAL
Sbjct: 161 VDRVGDPPAPAPDPPAAMPPPAEDMPSAAPAATGVPTWQEVGFKEPPLTVFKGGETEALA 220
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAA-------LKFGCLSVRRFYWALH 211
+L +F+ +++ PD T P + A LKFGCLS R F+ L
Sbjct: 221 RLEA-------AFQDPKWVAGFQKPD-TDPSAWEKPATTVLSPYLKFGCLSARLFHARLL 272
Query: 212 DHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ + R P+H ++ GQL+WRE+FYT+ + P + +M NP+C I W
Sbjct: 273 EVYR-----RHPAHSQPPVSLRGQLLWREFFYTVGSTTPNFHRMAGNPVCKQIDW----- 322
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------------------- 294
+ ++L AW+ +TG+P+IDA+M QL
Sbjct: 323 DDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLARHSVACFLTRGDLYVSWERGMEV 382
Query: 295 --RRLLDCTYCVCPVNFGR-----------RLDPDGIYIKRYVPE----------LRQFP 331
L+D + + N+ R+ ++ K+Y PE L+ P
Sbjct: 383 FEEHLIDQDHYLNAANWMWLSASAFFSQYFRVYSPVVFGKKYDPEGRFIRKFLPVLKDMP 442
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQAS 368
+YIYEPW APL VQ KA C++ +DYP IV+H AS
Sbjct: 443 AKYIYEPWTAPLEVQRKAGCVVGRDYPAPIVDHAVAS 479
>gi|340376095|ref|XP_003386569.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 550
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 200/455 (43%), Gaps = 107/455 (23%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
G NR +FLLECL DL QL++ G +L++ QG ++ L +E T L +++ E
Sbjct: 106 FGANRLKFLLECLHDLSNQLEALGLKLYVAQGQTTAVLAGLCQEWGVTHLSYQKSQEPRS 165
Query: 68 PYQSFPTGSHPPR-------------YQPC--------KTLLNFRD----LSGLPPRPKE 102
+ Y P K +L F+D LS L P P
Sbjct: 166 KVEERTISEMASMMNIEVEEFHNHTLYSPTELIKLNEGKPILTFKDFRTLLSKLKP-PAV 224
Query: 103 DIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
I + T + + + +F+ +P Y +++ G W+GGETEAL
Sbjct: 225 PIS----SPSTKQKYNEDNIPMFKVQTFQIPSLASLGCY-DVELGTG--PWVGGETEALK 277
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+L+ + + F + + D TS S ++FGCLSVR F W +
Sbjct: 278 RLDNYCTVRSKPFDNFL--------DCLFDKTSLSPYVRFGCLSVRHF-WHYVRQLASTD 328
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+ + ++ +L+ RE+++ +S+ P +D +NPIC+ +PW ++ L W+
Sbjct: 329 KSKMTLVQEVSSKLLQREFYFLVSSQVPNFDTDTQNPICIQLPWEFDADG-----LRRWR 383
Query: 279 NGQTGYPFIDAVMRQLRR-----------------------------------LLD---C 300
+G TGYP+IDA +RQ+ + +LD
Sbjct: 384 SGMTGYPWIDAAIRQMLKEGWIHNLLRESIATFLTRGDLWISWLKGAESFEMYMLDYEPS 443
Query: 301 TYCVC------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
C C P+++G++LDP+G YI+ +VPE++ P +YI+ PW AP
Sbjct: 444 VSCGCWMKSSSTAFITGTIEHYNPISYGQQLDPNGDYIRHFVPEVKNLPKEYIFCPWMAP 503
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+ VQ +A CI+ DYP +V+H+ A + + LK
Sbjct: 504 IEVQREAGCIVGTDYPHPVVDHMTAGVICMERLKS 538
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 160/333 (48%), Gaps = 62/333 (18%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 31 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 90
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP----RYQPCKTLL 88
D E GV+ G PP R+Q + +
Sbjct: 91 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRM 150
Query: 89 NFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR 148
LP +P + + + T +Q VP E+ +P D P +
Sbjct: 151 E------LPKKPVSTVISQQME--TCKVDIQENHDDVYGVPSLEEL-GFP-TDGLAPAV- 199
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSV 203
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 200 WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSC 252
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R FY+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 253 RLFYYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW- 310
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 311 -DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQ 339
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 162/330 (49%), Gaps = 56/330 (16%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 31 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEY 90
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 91 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRM 150
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + T +Q VP E+ +P D P + W G
Sbjct: 151 EL---PKKPVSTVISQQME--TCKVDIQENHDDVYGVPSLEEL-GFP-TDGLAPAV-WQG 202
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 203 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 255
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 256 YYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DR 312
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 313 NPEA---LAKWAEGKTGFPWIDAIMTQLRQ 339
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 161/329 (48%), Gaps = 54/329 (16%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E ++L E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKISRLSIEY 100
Query: 62 DCE--------GVKPYQSFPT---------------------GSHPP-RYQPCKTLLNFR 91
D E +K S G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLI--- 157
Query: 92 DLSGLPPR--PKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
S + P P E I G + + + VP E+ E G P W
Sbjct: 158 --SKMEPLEIPVETITAE--VMGKCTTPVSDDHDEKYGVPSLEELGFDTE---GLPSAVW 210
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGETEAL +L L ++ + +F+ +N + TG S L+FGCLS FY
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTG----LSPYLRFGCLSCCLFY 266
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +
Sbjct: 267 FKLTDLYKMVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DRN 323
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
P + L W G+TG+P+IDA+M QLR+
Sbjct: 324 P---EALAKWAEGRTGFPWIDAIMTQLRQ 349
>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
Length = 378
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 169/388 (43%), Gaps = 90/388 (23%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--------GV 66
LL+CL DLD L+ +LF+++G P +F +L +E N TKL E D E +
Sbjct: 1 ILLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAI 60
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDFRHVTFGTMSESLQ 119
K + R TL + + G PP + + + + E++
Sbjct: 61 KKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETIT 118
Query: 120 REVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEALIKLNERLSQEIES 170
EV T P + KY E+ F G P W GGETEAL +L L E ++
Sbjct: 119 SEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHL--ERKA 176
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITG 230
+ + + L P S L+FGCLS R FY+ L D + + + P ++ G
Sbjct: 177 WVANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVKKNSSPP-LSLYG 235
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
QL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+
Sbjct: 236 QLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNPEA---LAKWAEGRTGFPWIDAI 290
Query: 291 MRQLRR-----------------------------------LLDCTY------------- 302
M QLR+ LLD +
Sbjct: 291 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS 350
Query: 303 --------CVCPVNFGRRLDPDGIYIKR 322
C CPV FGRR DP+G YI+R
Sbjct: 351 SFFQQFFHCYCPVGFGRRTDPNGDYIRR 378
>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 639
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 150/341 (43%), Gaps = 88/341 (25%)
Query: 104 IDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFG------DPLIRWLGGETEA 156
+D + T T+S Q S + PE+ + PE+ +FG I GGE A
Sbjct: 259 LDEENQTTKTLSSFSQ---SWIDVIAGPEKLFRVPELSEFGFEKPGRHSFI--YGGENIA 313
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP---TSQSAALKFGCLSVRRFYWALHDH 213
L L E + K + + SP T P TS S L FGC+S R FY + D
Sbjct: 314 LKILQTYCKNEGQVVK---FEKPKTSPAETCPSKSTTSLSPYLYFGCMSTRTFYHRVRDI 370
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW----------- 262
N + ++ GQL+WRE+F+ NP +D+ME NP+CL I W
Sbjct: 371 QNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQFDKMEGNPLCLYIDWRWHTLPSTKEE 430
Query: 263 ---LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------------------------ 295
LPE + AWK GQTGYP+IDA+M QL+
Sbjct: 431 EDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYI 490
Query: 296 -----------RLLDCTYCV---------------------CPVNFGRRLDPDGIYIKRY 323
RL+D + + P FG++ D +G +I++Y
Sbjct: 491 SWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFTAYFRVYSPSTFGKKWDAEGKFIRKY 550
Query: 324 VPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+P L + P +YIYEPWKAP+ VQ ANC++ KDYP IV+H
Sbjct: 551 IPALAKMPSKYIYEPWKAPVTVQRLANCLVGKDYPFPIVDH 591
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + G NRF+FLLE + L + + G +L I +G I +F+++ T + F+Q
Sbjct: 103 PKRLLCGVNRFQFLLESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAWKITHIFFDQA 162
Query: 63 CE 64
E
Sbjct: 163 IE 164
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 202/483 (41%), Gaps = 138/483 (28%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R FLLE + ++D +L+ G QL +V G + ++ L +EQ+
Sbjct: 59 GTIRANFLLESINEVDEKLRKMGSQLVVVLGKSHEVLPEIVATTQAKALFYEQE------ 112
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDL---SGLPPRPKEDIDFRHV---------------- 109
+ P R Q +T+ ++ G K + H
Sbjct: 113 ------AAAPVREQDAETIQAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTA 166
Query: 110 --TFGTMSE-----SLQREVSLFQTVPK-PEQFHKYPEMDFGDPL--------------- 146
T+G+ ++ S+ +EV+ + VP P + K E F + L
Sbjct: 167 PSTYGSFTKIFNKMSVAKEVNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAAD 226
Query: 147 ---------IRWLGGETEA--LIKLNERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQ-S 193
+ GGE A L+ N SQ + +F+ + SP D T P T+ S
Sbjct: 227 DMKNSGKGGYAFAGGENAAIELLAKNMARSQWVATFEKP-----KTSPNDATRPSTTALS 281
Query: 194 AALKFGCLSVRRFYWAL---HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQ 250
+K GC+S RRFY L + +N+ +PP ++ GQL+WR++ Y + P +D+
Sbjct: 282 PYVKHGCISPRRFYHELSKVYSKYNSKETSKPP--VSLHGQLMWRDFNYLVGYSTPNFDK 339
Query: 251 MEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--------------- 295
M NPI IPW + P+ L AWK +TGYP+IDA+M QLR
Sbjct: 340 MIDNPIARQIPW--DDDPD---LLLAWKMSKTGYPYIDAIMTQLRETGWIHHLARHSVAC 394
Query: 296 ----------------------------------RLLDCTY-------CVCPVNFGRRLD 314
+ L CT C P+ FG++ D
Sbjct: 395 FLTRGDLWQSWEDGATVFEEYLIDADWSINNFNWQWLSCTAHFYQYFRCYSPIAFGKKTD 454
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQY 374
P+G YI++++P+ + P +YIYEPW+AP+ +Q+K I+ ++YP IV+H S N
Sbjct: 455 PNGDYIRKWLPQFKDMPAKYIYEPWEAPIELQKKVGVIVGENYPHPIVDHKLVSKNNMSR 514
Query: 375 LKK 377
+K+
Sbjct: 515 MKE 517
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 135/510 (26%), Positives = 201/510 (39%), Gaps = 126/510 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD----- 62
+G NR++FL+E + +LD +L G +L + + P +F L ++ N T L +E+D
Sbjct: 48 VGPNRYKFLIETMNELDGKLNDMGNKLHVFRADPADLFPALFKQWNITHLVYEKDPAPYA 107
Query: 63 CEGVKPYQSFPTGS-------------------HPPRYQPCKTLLNFRDL--SGLPPRPK 101
E + + T + + +P T F++L PRP
Sbjct: 108 VERDEKIKQIATDAKVEVLDITGHTLYDIDAVIEKNKGEPTTTAQGFKNLVKDMEIPRPT 167
Query: 102 EDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------PLIRWL 150
E E++++EV LF+ H+ M D P + L
Sbjct: 168 EGPTSMPKADNLKLEAIRKEVKLFKPGHDINAEHRKGRMTVYDSVTGVKDILASPTLEEL 227
Query: 151 G------------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP--TSQSAAL 196
G GE EAL +L++ + E + + Q SP PP T S +
Sbjct: 228 GYDVKEATTQIPGGEDEALRRLDKWIQDED---ATATFRKPQTSPAEYDPPATTQLSPYI 284
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNP 255
KFG L VR FYW + D + N+ GQLI+RE YF A + Q+ N
Sbjct: 285 KFGALGVREFYWKVVDLMDQYDGETSSEPENLPGQLIFREMYFAAQLAIGKPFGQIRGNK 344
Query: 256 ICLNIPW---------------LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------ 294
IC I W P+ E+ L W +G TG+P+IDA MRQL
Sbjct: 345 ICRLIDWKLCNVYDENGEQIIPRPKGPKEDEEALQKWADGFTGFPWIDAAMRQLKQEGWM 404
Query: 295 -----------------------------RRLLD-----------CTYCVC--------- 305
R L+D C C
Sbjct: 405 HHLARHSVACFLTRGQLYISWERGAEVFDRYLVDRDPASNAGNWMWLSCSCFFHQYYRNY 464
Query: 306 -PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
F + D G +++YVPEL+ +P +YIY+PW+AP VQ+KA CII KDYP+ +V+
Sbjct: 465 GTTTFPAKYDKTGKLVRKYVPELKDYPDKYIYKPWEAPEDVQKKAGCIIGKDYPKPMVDE 524
Query: 365 VQASLENKQYLKKEKANCIINKDYPERIVN 394
+AS E +K + A + +R N
Sbjct: 525 KRASSECMAKMKDQYAKKLYGDSELKRKAN 554
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 118/243 (48%), Gaps = 65/243 (26%)
Query: 185 LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH--FNITGQLIWREYFYTMS 242
+T T+ S +KFGC+S R FY L+ PS ++ GQL+WRE++Y +
Sbjct: 297 MTPSTTALSPYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYYLVG 356
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYL-NAWKNGQTGYPFIDAVMRQL------- 294
A P +D+ME NPIC IPW NK++ L AW+N QTG+P+IDA M QL
Sbjct: 357 AGTPNFDKMEGNPICRQIPW------NKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIH 410
Query: 295 ----------------------------RRLLDCTY-----------CVC---------- 305
R L+D + C C
Sbjct: 411 HLARHAVACFLTRGDLFVHWEWGRDTFDRDLVDADWALNNGNWMWLSCSCFFYQYFRVYG 470
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
P +F ++ D DG Y+K Y+P L+ P +Y+YEPW APL VQ+KA C++ DYP IV+H
Sbjct: 471 PHSFAKKYDKDGAYVKHYLPVLKNMPAKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHA 530
Query: 366 QAS 368
AS
Sbjct: 531 TAS 533
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NR RFLL+ L DLD L+ G L ++ G P + + + + +E D E
Sbjct: 55 VGANRMRFLLQSLRDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIE 111
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 134/279 (48%), Gaps = 73/279 (26%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG----PPTSQSAALKFGCLSVRRF 206
GGETEAL +L E+LS K V + D T T S LKFGCLS R F
Sbjct: 214 GGETEALARLAEQLSD-----KGWVAAFEKPKGDPTAFIKPATTVLSPHLKFGCLSPRLF 268
Query: 207 YWALHDHFNTIHE-GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
Y AL + E +PP ++ GQL+WRE++Y +AH P Y +ME NPIC IPW
Sbjct: 269 YEALQRVYKEKKEHSKPP--VSLLGQLLWREFYYVAAAHTPNYHRMEGNPICKQIPW--- 323
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------LLDCTYCVCP-----VNF--GR 311
N ++ AW+ +TGYP+IDA+M QLRR C C V++ GR
Sbjct: 324 --DNNAEFYRAWEESRTGYPWIDAIMAQLRRTGWMHHLARHCVACFLTRGDLYVSWEKGR 381
Query: 312 ----RLDPDG----------------------------IYIKRYVPE----------LRQ 329
RL DG Y K+Y PE L+
Sbjct: 382 DTFDRLLIDGDPSLNSGNWMWLSASSFFYQYFRVYSPITYGKKYDPEGKYVKHFLPILKD 441
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQAS 368
+P +YI+EPWKAP VQE+A CII KDYP IV+H + S
Sbjct: 442 YPPKYIWEPWKAPKEVQEQAGCIIGKDYPAPIVDHAEVS 480
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NR FLLE L DL L++ G L +++G+P + ++ ++ N T+LCFE D E
Sbjct: 52 VGVNRLNFLLESLTDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTE 108
>gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis]
gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis]
Length = 303
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 137/285 (48%), Gaps = 80/285 (28%)
Query: 169 ESFKSGVYLSN----QVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTI-----H 218
ES + ++++ +P+ P T+ S LKFGCLS R F H I
Sbjct: 3 ESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARIF----HQQLKAILKRQSK 58
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+PP ++ GQL+WRE++YT++A P +D+M N CL IPW ++ +L AW
Sbjct: 59 HSQPP--VSLIGQLLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEQA-----DHLEAWT 111
Query: 279 NGQTGYPFIDAVMRQLRR-----------------------------------LLDCTYC 303
+G+TGYPFIDA+MRQLR+ LLD +
Sbjct: 112 HGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEAGQRVFEQLLLDQDWA 171
Query: 304 V---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
+ PV FG++ DP G YI++YVPEL ++P IYEPWKA
Sbjct: 172 LNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKAT 231
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
L Q + C++ DYP RIV H L +K+ +K+ A +N++
Sbjct: 232 LADQREYGCVLGVDYPHRIVKH---ELVHKENIKRMSAAYKVNRE 273
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 141/288 (48%), Gaps = 74/288 (25%)
Query: 151 GGETEALIKLNERLSQE--IESF-KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGE+ AL ++ + LS + + +F K + V P T S LKFGCLS R F+
Sbjct: 209 GGESAALARMADYLSDKGWVCAFEKPKGNPAAFVRPSTT----VLSPYLKFGCLSPRLFH 264
Query: 208 WALHDHF---NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
L + N +H +PP ++ GQL+WRE+F A P +D+M NPIC IPW+
Sbjct: 265 AKLQQIYAERNGMHT-QPP--VSLRGQLLWREFFTLCGAAIPNFDRMAGNPICKQIPWV- 320
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------- 296
+ + + AW++ +TGYP+IDA+M QLR+
Sbjct: 321 ----DDPERIAAWEHSRTGYPWIDAIMAQLRQQGWMHHLARHSVACFLTRGDLWCSWEAG 376
Query: 297 -------LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELR 328
L+D + + P+ FG++ D +G YI+R++P L+
Sbjct: 377 QAVFDKYLIDADWSLNAANWQWLSASAFFSQYFRVYSPIAFGKQYDKNGDYIRRFLPVLK 436
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
P++YIYEPW APL VQ+ A C++ KDYP IV+H A EN +K
Sbjct: 437 DMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPIVDHQAAMKENMARMK 484
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQG--------SPISIFQKLKRELNFTKLCF 59
IG NR +FLLE L DLD ++ G +L +++G + +E T+LCF
Sbjct: 43 IGVNRIQFLLESLTDLDASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCF 102
Query: 60 EQDCE 64
E D E
Sbjct: 103 EHDTE 107
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 195/449 (43%), Gaps = 122/449 (27%)
Query: 11 NRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ------- 61
N +RFLLE L DLD +L+ + +L I G P + L + N ++L F+
Sbjct: 95 NVWRFLLESLHDLDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLES 154
Query: 62 -----------DCEGVKPYQSFP-------------TGSHPPRYQPCKTLLNFRDLSGLP 97
D + VK + G P Y+ + LL L G P
Sbjct: 155 KKHDELIKFAADSQNVKTTSFYSHTLYNPEDILRANNGRFPHSYKELRRLL---PLVGRP 211
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFGDPLIR------WL 150
P + D V L++ Q + +PE ++ P + D G L W+
Sbjct: 212 REPFPEPDPVLVL-------LRQNSPEDQDLEEPE--NRIPSLQDLGFGLEETLYTNSWV 262
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGETE L +L+ S+ S + ++ +S D GP ++FGCLSVR+ + L
Sbjct: 263 GGETEGLSRLSNFCSRR--STQPNEPITWLISKDSLGP------YIRFGCLSVRQLFSQL 314
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ +T +G+ +T L+ RE+ Y + P +D M+ NP+C+ +PW
Sbjct: 315 RQYASTSSKGQV-LFAELTKNLLMREFAYMVGLTVPKFDTMKDNPLCIQLPW-----EEN 368
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRR---------------------------------- 296
E++ AWK G+TGYP+IDA MRQ+ R
Sbjct: 369 ERFFYAWKEGRTGYPWIDAAMRQIVRDGWSHYSTRQSIAVFLTRGYLWISWEKGLEFFQE 428
Query: 297 -LLD-----CTYC----VCP---VNFGRRLDP---------DGIYIKRYVPELRQFPIQY 334
+LD T C C V+F DP DG +IK YVPEL+ FP Y
Sbjct: 429 HMLDFELPVSTVCWMQSSCSGFFVDFIESYDPCYIGKQMDSDGHFIKLYVPELQDFPSDY 488
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVN 363
I+ PW APL VQ++ANCII KDYP+ +V+
Sbjct: 489 IHTPWLAPLHVQQQANCIIGKDYPKPLVD 517
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 121/253 (47%), Gaps = 67/253 (26%)
Query: 178 SNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGR---PPSHFNITGQLI 233
S Q++ P T+ S LKFGC+S R F+ L + G+ PP ++ GQL+
Sbjct: 288 STQLAEAFMAPATTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPE--SLEGQLL 345
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WRE++Y P YD+M N IC IPW + E+ L AW+ +TG+P+IDA M Q
Sbjct: 346 WREFYYLAGYGTPNYDRMAGNRICRQIPWTWD-----EERLAAWEESRTGFPWIDACMMQ 400
Query: 294 L-----------------------------------RRLLDCTY-----------CVC-- 305
L R L+D + C C
Sbjct: 401 LKQEGWMHHLARHAVACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMWLSCSCFF 460
Query: 306 --------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
PV+FG++ D +G YI++Y+P+L+ P +YIYEPW AP+ VQ KA C++ DY
Sbjct: 461 YQYFRVYGPVSFGKKYDKEGAYIRKYLPQLKDMPAKYIYEPWTAPIEVQRKAGCVVGVDY 520
Query: 358 PERIVNHVQASLE 370
P IV+H AS E
Sbjct: 521 PAPIVDHAVASKE 533
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NR RFLLE L DLD L++ G L ++ G P + +LC+E D E
Sbjct: 48 VGANRLRFLLESLTDLDASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTE 104
>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 191/452 (42%), Gaps = 100/452 (22%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE------ 64
NR+ FLLE L DLD L+S G +L +V+G P+ KL + N +L E D E
Sbjct: 63 NRWWFLLESLRDLDYNLRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQR 122
Query: 65 -----------GVKPYQSFPTGSHPPRY----QPCKTLLNFRDLS------GLPPRPKED 103
GV+ Q + K + F +++ G P P +
Sbjct: 123 DAVVTHLAKNLGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQT 182
Query: 104 IDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNER 163
+D FG + + + VP +F E+ W GGE EAL +L+
Sbjct: 183 VD--KTVFGACLTPVGPDHADKYGVPLLSEF-GMKELKEATAKKYWTGGEPEALRRLSAA 239
Query: 164 LSQEIESF--KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
L + E+ + G + S D S ++FGCLS R +Y L + +
Sbjct: 240 LKKCAENDFEERGWTIDEMFSND-----AHLSPYMRFGCLSPRLYYQQLALTYMKEKKSI 294
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
PP+ TG L+ RE F +++HN D+M NP+ + PW NKE L WK G+
Sbjct: 295 PPATL-FTG-LVRRELFLHVASHNADLDKMLDNPLSVQFPW----EENKEG-LERWKEGK 347
Query: 282 TGYP-------------FIDAVMRQ-----LRR--------------------------- 296
TG+P +I + RQ L R
Sbjct: 348 TGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNA 407
Query: 297 ----LLDCTYCV-------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
L C+ V CPV G+++DP G YIKRYVPE+R P +Y+ EPW APL V
Sbjct: 408 SNWLWLSCSSYVHGAVPWYCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSV 467
Query: 346 QEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Q+ C++ +DYP IV+H++ + Q +++
Sbjct: 468 QKACRCVVGEDYPSPIVDHMEQRMICVQRMQQ 499
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 197/478 (41%), Gaps = 142/478 (29%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G N++RF++ECL DLD +L+++G +LF+ +G+ + F + R+ N T+L + + E
Sbjct: 54 GANQWRFVIECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHR 113
Query: 69 YQS------------------------------FPTGSHPPRYQPCKTLLNFRDLSGLPP 98
++ + GS P Y+ + +L +D G PP
Sbjct: 114 FRDAAVRKIAVDEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVL--KDF-GAPP 170
Query: 99 RPKEDIDFRHVTFGTMS---ESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
+ E H F + S E+L+ E T+ + ++P +++GGETE
Sbjct: 171 QASETATAEH--FASCSVPLEALRDERYNMVTLEELGMRCEHPS--------KFVGGETE 220
Query: 156 ALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
L ++ + L + + F+ + P TG S FGCLSVR FY L
Sbjct: 221 GLRRVEKHLQNQGWVTQFEKPKTAPTSLLPSTTG----LSPYFSFGCLSVRHFYHRLDKI 276
Query: 214 FNTI--HEGRPPSHFNI----------------TGQLIWREYFYTMSAHNPYYDQMEKNP 255
+ + H+ S + T +LI R F + HN + +
Sbjct: 277 YAKLRSHQTSASSKSRVMIERTRCVLLLEMLSRTCRLIARLIFLLCNWHNRFLQLTISDF 336
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------- 296
+ + + E TG+P+IDA+M QL++
Sbjct: 337 VACFLSSVAE----------------TGFPWIDAIMSQLQKEGWVHHLARHAVACFLTRG 380
Query: 297 ----------------LLDCTYCV---------------------CPVNFGRRLDPDGIY 319
LLD Y V CPV FG+R DPDG +
Sbjct: 381 DLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGSAFYHQYTRIFCPVRFGKRTDPDGTF 440
Query: 320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
I+ Y+P L+ FP QYIYEPWKAPL VQE A CI+ DYP +V+H S +N + +++
Sbjct: 441 IRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFPMVDHEIVSQQNLELMRE 498
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 154/330 (46%), Gaps = 58/330 (17%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +IG N +RFLL+ L DLD L+ +LF+++G P +F +L RE T+L
Sbjct: 61 ASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRL------ 114
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV------TFGTMSES 117
+F S P + + +G+ H+ GT +
Sbjct: 115 -------TFEEDSEPFGKERDSAICMLAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLT 167
Query: 118 LQREVSLFQTV-----------PKPEQFHKYPEMD-----FGDPLIR------------- 148
++ +S+ + + P ++ P D +G P +
Sbjct: 168 YKKFLSVIEGIAPPDPPVPHIDPSAQKLGHTPLSDNHDELYGVPTMEELGLETSKLFVEV 227
Query: 149 WLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
W GGETEAL +L+ L ++ I SF S L P+ S L+FGCLS R F
Sbjct: 228 WHGGETEALKRLDRHLERKAWIASFGK----PKVTSDSLMASPSGVSPYLRFGCLSPRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + G PP+ ++ GQL+WRE+F+ +S +NP +D+ME NPICL I W +
Sbjct: 284 YYRLMDLYRKVKGGPPPT--SLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDK 341
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
+ L W + QTG+P+IDA+M QL++
Sbjct: 342 QVASD--LQKWTDAQTGFPWIDAIMSQLKQ 369
>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
Length = 525
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 122/468 (26%), Positives = 189/468 (40%), Gaps = 113/468 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
IG NR RFLLE L DLD L+ G +LF+++G+ + + RE T++ + +D E
Sbjct: 53 IGNNRIRFLLESLTDLDENLRKIGTRLFVLRGNARTAIKTFCREYEITQMTYMRDAEVFY 112
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT 127
R + ++ D P+E ID G + SL S+ +
Sbjct: 113 RQLEAEILEEVNR----REIVTRSDHGHTLYDPQEIIDANE---GQVPLSLDEFYSVIPS 165
Query: 128 VPKPE----------------QFHKYPEMDFGDPLI------------RWLGGETEALIK 159
+ P + + + +G P + RW GGET AL +
Sbjct: 166 LDVPALPAPTVTAEMFKSCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALER 225
Query: 160 LNERLSQE-IESFKSGVYLSNQVSPDLTGPPTSQ------------SAALKFGCLSVRRF 206
L ++ Q + F G S + + P TS+ S + G +S R F
Sbjct: 226 LKYKMKQNTLYEFNQGPSTSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTF 285
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL-PE 265
+ H N + R + GQ+I+RE+FYT++ + ++E N IC +I W P+
Sbjct: 286 W---HGAKNCSEKMRT----TVQGQMIYREFFYTVAYTVNNFTRIEGNRICKDIKWSDPK 338
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------------------------- 296
++ +++ +K G TGYP+IDA +RQ++
Sbjct: 339 TNERAAEWIEKFKQGMTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQ 398
Query: 297 ------LLDCTYCVC----------------------PVNFGRRLDPDGIYIKRYVPELR 328
LLD Y + PV R+ D G +I+RY PEL+
Sbjct: 399 QLFEEFLLDADYALNAGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELK 458
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
P QYI PWKAP VQ KA II DYP ++N ++N +K
Sbjct: 459 NLPTQYICAPWKAPQDVQLKARAIIGVDYPAPMLNAATMRIQNLNKIK 506
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 155/337 (45%), Gaps = 75/337 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
+P HIG NR+RFL+E L DLD LK +LF+V G P + KL + T+L FE
Sbjct: 41 YPNNTHIGINRWRFLIEALKDLDSSLKKLNSRLFVVSGPPAEVLPKLFEKWKITRLTFEV 100
Query: 62 DCEGVKPY-----------------QSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRP 100
D E PY + P SH TL N + +G PP
Sbjct: 101 DTE---PYSQSRDKEVMKLAEENGVEVIPKISH--------TLYNIDRIIEENNGKPP-- 147
Query: 101 KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQ---------FHKYPEMDFGDPLIRWLG 151
+V F ++ ++ S + VP P + F + E +F P + LG
Sbjct: 148 -----MTYVRFLSVVNAIG---SPKKPVPAPTKEDMKGVSTPFFEDHEEEFRIPTLEDLG 199
Query: 152 -------------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALK 197
GE EAL +L+E + + K + Q SP+ P T+ S ++
Sbjct: 200 LDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCK---FEKPQTSPNSIIPSTTVLSPYIR 256
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
FGCLS R F+W L D + PP ++ GQL+WRE+FYT + P +++ME N C
Sbjct: 257 FGCLSARTFWWRLADVYRGKQHSEPP--VSLHGQLLWREFFYTTAVGIPNFNRMEGNRHC 314
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+ + W N ++L AW+ +TG+PFIDA+M QL
Sbjct: 315 VQVDW-----DNNPEHLAAWREARTGFPFIDAIMTQL 346
>gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus]
Length = 237
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 117/247 (47%), Gaps = 74/247 (29%)
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG-----PPTSQSAALK 197
GD L W GGETEAL +LN+ L ++ +++N P +T PT S L+
Sbjct: 4 GDSLHVWKGGETEALERLNKHLDRK-------AWVANFERPRITAQSLFASPTGLSPYLR 56
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
FGCLS R FY+ L + + + P ++ GQL+WRE+FYT +NP +D ME NPIC
Sbjct: 57 FGCLSCRVFYYNLWELYMKLRRSSSPP-LSLFGQLLWREFFYTAGTNNPNFDHMEGNPIC 115
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + + L W G+TG+P+IDA+M QLR+
Sbjct: 116 VQIPW-----DHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 170
Query: 297 --------------LLDCTY---------------------CVCPVNFGRRLDPDGIYIK 321
LLD + C CPV FGRR DP G YI+
Sbjct: 171 WISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 230
Query: 322 RYVPELR 328
RY+P+L+
Sbjct: 231 RYIPKLK 237
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 155/325 (47%), Gaps = 50/325 (15%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 72 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 131
Query: 63 CE--------GVKPYQS------FPTGSHP---PRY-------QPCKTLLNFRDLSGLPP 98
+ VK Y S F SH P + +P + +F ++G P
Sbjct: 132 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPS 191
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKYPEMDFGDPLIRWLGGETEAL 157
K ++ + + + + +S VP E+ +K E P GGE+EAL
Sbjct: 192 CAKSELVMSYSSLPPIGDIGNLGIS---EVPSLEELGYKDDEQADWTPF---RGGESEAL 245
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALH 211
+L + +S + +++N P L T S LKFGCLS R FY L
Sbjct: 246 KRLTKSISDK-------AWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 298
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW E H
Sbjct: 299 NIYKDVKKHTSPP-VSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW-NEDH---- 352
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR 296
L AW++G+TGYP+IDA+M QL +
Sbjct: 353 AMLAAWRDGKTGYPWIDAIMVQLLK 377
>gi|341616316|gb|AEK86195.1| CRY1A, partial [Halichoeres trimaculatus]
Length = 309
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 123/249 (49%), Gaps = 68/249 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSN-QVSPD-LTGPPTSQSAALKFGCLSVRRF 206
W GGETEAL +RL Q +E G + +++P+ L PT SA L+FGCLS R
Sbjct: 70 WPGGETEAL----KRLEQHLEKKAWGAHCERPRMNPNSLLASPTELSAYLRFGCLSCRLL 125
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D ++ + + ++ GQL+ RE+F+T + +NP +D+ME NP+C+ IPW E
Sbjct: 126 YFKLTDLYHKVKQNNA-VPYSPYGQLLCREFFFTTATNNPCFDKMEGNPVCVQIPW--ER 182
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQL----------RRLLDC---------------- 300
+P L W G+TG+P+IDA+M QL RR + C
Sbjct: 183 NPEA---LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGVK 239
Query: 301 ------------------TYCVC------------PVNFGRRLDPDGIYIKRYVPELRQF 330
+ C PV FGRR DP G YI+RY+P LR F
Sbjct: 240 VFEELLIDADWSGNAGSWMWLSCSAFFQQFFQCCCPVGFGRRTDPKGDYIRRYLPVLRGF 299
Query: 331 PIQYIYEPW 339
P +YIY+PW
Sbjct: 300 PDKYIYDPW 308
>gi|351713396|gb|EHB16315.1| Cryptochrome-1 [Heterocephalus glaber]
Length = 591
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 99/184 (53%), Gaps = 53/184 (28%)
Query: 242 SAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----- 296
+ +NP +D+ME NPIC+ IPW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 261 ATNNPRFDKMEGNPICVQIPW--DKNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIH 315
Query: 297 ----------------------LLDCTY---------------------CVCPVNFGRRL 313
LLD + C CPV FGRR
Sbjct: 316 HLARHAVACFLTRGDLWVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRT 375
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
DP+G YI+RY+P LR FP +YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N +
Sbjct: 376 DPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIE 435
Query: 374 YLKK 377
+K+
Sbjct: 436 RMKQ 439
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 102 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 161
Query: 62 DCE 64
D E
Sbjct: 162 DSE 164
>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
Length = 520
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 116/454 (25%), Positives = 183/454 (40%), Gaps = 119/454 (26%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+ NR+ FLLE L DLD L G +LF+++G+P+ + L ++ N ++ FE D E
Sbjct: 62 VSLNRWGFLLESLRDLDTSLVECGSRLFVIRGNPVEMLPNLFKKWNINQMSFEVDSE--- 118
Query: 68 PYQSFP--TGSHPPRYQPCK-------TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESL 118
PY + SH + + TL + R L GL + F ES+
Sbjct: 119 PYSNSRDLVISHLAKENGIEVISRVSHTLYDPRILRGLSS------GIVPLLFDEFKESV 172
Query: 119 QREVSLFQTVPKP----------------EQFHKYPEMD-FGDPLIR--------WLGGE 153
++ + VPK +Q + P +D G + + GGE
Sbjct: 173 LQKRQPEKPVPKVGRKLFGACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGE 232
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLT-----GPPTSQSAALKFGCLSVRRFYW 208
+EAL ++ L +++ + P++T T S L+ GCLS R +
Sbjct: 233 SEALKRMETALQWMVKN--------DFTEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQ 284
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+ + + PPS + +L+WRE+F+ + P +M NPI L IPW
Sbjct: 285 RITEEYIKSKGVSPPSELFV--KLLWREFFFVVGGQIPDAHEMINNPISLEIPW-----E 337
Query: 269 NKEKYLNAWK-----------------------------------------NGQTGYPFI 287
+ +YL WK N + G+
Sbjct: 338 DSVEYLERWKKGTTGFPWIDAIMRQLRTEGWIHNIARRAVASFLTRGCLWVNWEEGFKVF 397
Query: 288 DAVMRQLRRLLDCTYCV---------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
D R L+ + CPV G+++DP G Y+++YVPE+R P
Sbjct: 398 DEFQLDAERSLNVGNWLWVSTSTFVKGPVPWFCPVGVGKKIDPTGEYVRKYVPEIRNLPT 457
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+YI+EPW P +Q C+I +DYP IVNHV+
Sbjct: 458 EYIFEPWLTPRDLQRSYGCVIGRDYPAPIVNHVK 491
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 141/321 (43%), Gaps = 88/321 (27%)
Query: 131 PEQFHKYPEMDFG----DPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLT 186
PE F P G P + GGE+EA+ +L+ +E + G++ + SP
Sbjct: 336 PEPFVVPPLTALGLTPPSPHAAFYGGESEAMKRLDAFCQEE---RRVGLFEKPKTSPVAF 392
Query: 187 GPP--TSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP-PSHFNITGQLIWREYFYTMSA 243
PP T+ SA L FGCLS R F++ + RP P+ + GQL+WRE+FY +
Sbjct: 393 DPPSTTTLSAYLTFGCLSAREFFYRIM-FIQLKFPLRPGPTQVTLEGQLMWREFFYCYAC 451
Query: 244 HNPYYDQMEKNPICLNIPW-----LPESHPNK------------EKY----LNAWKNGQT 282
P +D ++NP C I W + +SHP + EK L WK G+T
Sbjct: 452 GTPGFDSQKQNPGCKQIDWRLRAEVYDSHPEQHHQGAIVTKDADEKLALHQLQCWKEGRT 511
Query: 283 GYPFIDAVMRQL-----------------------------------RRLLDCTY----- 302
G+P+IDAVMRQ+ +L+D +
Sbjct: 512 GFPWIDAVMRQINQEGWAHHAGRHAVACFLTRGVLYISWLQGAAYFQEKLIDMDWPINIG 571
Query: 303 ----------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQ 346
P F +R D G +I++Y+P LR P ++I+EPWKAPL VQ
Sbjct: 572 NWLWVSASCFFSNYRRVASPTTFPQRWDQHGEFIRKYIPALRNMPDKFIFEPWKAPLRVQ 631
Query: 347 EKANCIISKDYPERIVNHVQA 367
A C++ KDYP IV+ A
Sbjct: 632 RDACCLMGKDYPFPIVDSKTA 652
>gi|412988942|emb|CCO15533.1| predicted protein [Bathycoccus prasinos]
Length = 574
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 116/240 (48%), Gaps = 70/240 (29%)
Query: 190 TSQSAALKFGCLSVRRFYWALHDHFNTIHEGR---PPSHFNITGQLIWREYFYTMSAHNP 246
T+ S LKFG +SVR+FY+ L D +G+ PP+ ++ GQ++WRE++Y + P
Sbjct: 312 TALSPHLKFGTVSVRQFYFELQDILKNELKGKHTNPPT--SLMGQILWREFYYVNACGTP 369
Query: 247 YYDQMEKNPICLNIPWL--PESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------- 294
YD+M N IC I W PE+ L W+N QTG+P+IDA M QL
Sbjct: 370 NYDKMVGNRICKQIKWKHDPEN-------LAKWENAQTGFPWIDAAMTQLKEEGWMHHLA 422
Query: 295 -------------------------RRLLDCTYCV---------------------CPVN 308
R L+D + + P +
Sbjct: 423 RHAVACFLTRGDLFISWEEGARVFDRDLVDADWALNNGNWMWLSASSFFYQYFRVYGPHS 482
Query: 309 FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQAS 368
F ++ D +G Y+K ++P L+ P +Y+YEPW APL VQ+KA CI+ DYP+ +V+H AS
Sbjct: 483 FAKKYDKEGAYVKHFLPVLKDMPSKYVYEPWTAPLEVQKKAGCIVGVDYPKPMVDHAIAS 542
>gi|350633368|gb|EHA21733.1| Hypothetical protein ASPNIDRAFT_184343 [Aspergillus niger ATCC
1015]
Length = 640
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 193/489 (39%), Gaps = 143/489 (29%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC DL + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQKDLSQSYSKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 64 EG---------------------VKPYQSFPTGSHPPRYQPCKTLLNFRDL--------S 94
+G VK ++ ++ + ++ + +
Sbjct: 110 DGYARERDETVTKLAKEAGVEVIVKSGRTLFDSDEVVKHNKGEPTMSIHQVEKAIEQINN 169
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVS-LFQTVPKPEQ----FHKY------------ 137
G+P RP +D + E R++S L VP E H+
Sbjct: 170 GVPDRP---VDAPERIPDPLGEEKMRDISGLEHEVPDQEDDINAAHRTKHNDNQYKNIAG 226
Query: 138 PEMDFGDPLIRWL------------GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDL 185
P+ DF P + L GGE+ AL L L Q E F + + + SP
Sbjct: 227 PKDDFSVPTLDELSIDPSQATSPHHGGESIALEMLTTYLQQN-EDFIA-TFEKPKTSPAA 284
Query: 186 TGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH---FNITGQLIWREYFYT 240
P + S L FG LSVR+F+ + D P+ N+ GQL++RE F+
Sbjct: 285 FHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQHESAHKPTSDLPTNLPGQLLFREMFFA 344
Query: 241 M-SAHNPYYDQMEKNPICLNIPWLPESHPNKEK----------------YLNAWKNGQTG 283
+A P Y Q N I +PW +S+ +KE + WK G+TG
Sbjct: 345 AQAALGPVYAQTRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTG 404
Query: 284 YPFIDAVMRQLRR----------------------------------------------- 296
+P+IDA+MRQL+
Sbjct: 405 FPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGN 464
Query: 297 --LLDCTY-------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
L CT C PV FG++ DP+G +++ Y+PEL + +YIYEPWKAPL Q+
Sbjct: 465 WMWLSCTAFFTQYNRCYSPVAFGKKWDPEGRFVRHYIPELEHYDKKYIYEPWKAPLEDQK 524
Query: 348 KANCIISKD 356
+ C ++ D
Sbjct: 525 RWKCRVAGD 533
>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
Length = 1229
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 197/493 (39%), Gaps = 137/493 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
+G NR+++L++C DL + + +LF+++ +P ++F KL + T L FE+D +
Sbjct: 616 VGSNRWQYLIDCQNDLSQSITKLNPKSKLFLIREAPQTLFPKLFKAWKITHLVFEKDTDA 675
Query: 65 ----------------GVK-----------PYQSFPTGSHPPRYQPCKTLLNFRDLSGLP 97
GV+ P + + P + + + +P
Sbjct: 676 YARERDEKVMEIAKEAGVEVVIKVGRTLYDPDELVKENNGKPTMSITQVQNAGKKIGAIP 735
Query: 98 ---PRPKEDIDFRHVTFGTMSE---------SLQREV--SLFQTVPKPEQFHKYP---EM 140
P PK D F E ++QR+ + + T+ P P E+
Sbjct: 736 RPIPAPKTLPDPGKTDFNFDQEKPAQDPDINAVQRDGDEASYSTLAGPNGDFAVPTMQEL 795
Query: 141 DFGDPLIRWLGGETEALIKLNERL--SQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
+ + GGET AL L+E + S+ +F+ SP T T S L F
Sbjct: 796 GLKEATTQHRGGETLALKTLDETIANSEYTATFEKPKTAPTAFSPQST---TLLSPHLHF 852
Query: 199 GCLSVRRFYWALHDHFNTIH--EGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNP 255
G LSVR FYW + D + +PP+ ++TGQL++R+ YF +A + Q NP
Sbjct: 853 GSLSVREFYWRVQDIVTSFKGKASQPPA--SLTGQLLFRDMYFGAQAALGYSFGQTYNNP 910
Query: 256 ICLNIPW-LPES---------------HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--- 296
C IPW LP + E + WK+G+TG+P+IDA+MRQL R
Sbjct: 911 ACRFIPWHLPSAIDPATNLITGKYLVDSALAESHFQRWKHGRTGFPWIDALMRQLAREGW 970
Query: 297 ----------------------------------------------LLDCTY-------C 303
L CT C
Sbjct: 971 IHHLGRHAVACFLTRGGCYIDWERGAEVFEEFLIDHESACNIGNWQWLSCTAFFAQFFRC 1030
Query: 304 VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
PV F + D +G +++RYVPEL F ++IYEPWKAP+ Q+K C RIV
Sbjct: 1031 YSPVAFPAKWDKNGDFVRRYVPELAHFDKKFIYEPWKAPIADQKKWGC--------RIVE 1082
Query: 364 HVQASLENKQYLK 376
V ++ +Y K
Sbjct: 1083 SVDGYVQEGEYPK 1095
>gi|444511893|gb|ELV09967.1| Cryptochrome-1 [Tupaia chinensis]
Length = 463
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 61/192 (31%)
Query: 242 SAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----- 296
+ +NP +D+ME NPIC+ IPW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 200 ATNNPRFDKMEGNPICVQIPW--DKNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIH 254
Query: 297 ------------------------------LLDCTY---------------------CVC 305
LLD + C C
Sbjct: 255 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYC 314
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
PV FGRR DP+G YI+RY+P LR FP +YIY+PW AP GVQ+ A C+I +YP+ +VNH
Sbjct: 315 PVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGVNYPKPMVNHA 374
Query: 366 QASLENKQYLKK 377
+AS N + +K+
Sbjct: 375 EASRLNIERMKQ 386
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE 64
D E
Sbjct: 101 DSE 103
>gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti]
gi|108881984|gb|EAT46209.1| AAEL002602-PA [Aedes aegypti]
Length = 321
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 134/309 (43%), Gaps = 71/309 (22%)
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF 134
G P Y + ++ D PP+P+ I + T + + VP E+
Sbjct: 24 GRAPLTYHQFQAIIASMDA---PPQPEPAITLDTIANATTPQYEDHDDKY--GVPTLEEL 78
Query: 135 HKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSA 194
E + PLI W+ GETEAL +L L E +++ + L T S
Sbjct: 79 GF--ETEGLKPLI-WVRGETEALARLERHL--ERKAWVASFGRPKMTPQSLLARQTGLSP 133
Query: 195 ALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKN 254
L+FGCLS R FY+ L D + I + PP ++ GQL+WRE+FY + NP +D+M N
Sbjct: 134 YLRFGCLSTRLFYYQLTDLYKKIKKACPP--LSLYGQLLWREFFYCAATKNPNFDKMAGN 191
Query: 255 PICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------ 296
PIC+ I W + L W +GQTG+P+IDA+M QLR
Sbjct: 192 PICVQISW-----DRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTR 246
Query: 297 -----------------LLDCTY-------------------CVCPVNFGRRLDPDGIYI 320
LLD + C CPV FGR+ DP+G YI
Sbjct: 247 GDLWISCEEGMKVFEELLLDADWSVNAGMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYI 306
Query: 321 KRYVPELRQ 329
+RY+P L++
Sbjct: 307 RRYLPVLKE 315
>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
Length = 641
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 129/494 (26%), Positives = 193/494 (39%), Gaps = 153/494 (30%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC DL + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 64 EG----------------------------------VKPYQSFPTGSHPPRYQPCKTLLN 89
+G VK + PT S + + + N
Sbjct: 110 DGYARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINN 169
Query: 90 FRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS-LFQTVPKPE--------------QF 134
G+P RP +D + E R++S L VP E Q+
Sbjct: 170 -----GVPDRP---VDAPERIPDPLGEEKMRDISGLEHEVPDHEDDINAAHRTKHNDNQY 221
Query: 135 HKY--PEMDFGDPLIRWL------------GGETEALIKLNERLSQEIESFKSGVYLSNQ 180
+ P+ DF P + L GGE+ AL L L Q + + + +
Sbjct: 222 NNIAGPKGDFSIPTLDELSIDPSQATSPHHGGESIALEMLTTYLQQNEDYIAT--FEKPK 279
Query: 181 VSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH---FNITGQLIWR 235
SP P + S L FG LSVR+F+ + D P+ N+ GQL++R
Sbjct: 280 TSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFR 339
Query: 236 EYFYTM-SAHNPYYDQMEKNPICLNIPWLPESHPNKEK----------------YLNAWK 278
E F+ +A P Y Q N I +PW +S+ +KE + WK
Sbjct: 340 EMFFAAQAALGPVYAQTRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWK 399
Query: 279 NGQTGYPFIDAVMRQLRR------------------------------------------ 296
G+TG+P+IDA+MRQL+
Sbjct: 400 EGRTGFPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETA 459
Query: 297 -------LLDCTY-------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
L CT C PV FG++ DP+G +I+ Y+PEL + +YIYEPWKAP
Sbjct: 460 SNVGNWMWLSCTAFFTQYNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAP 519
Query: 343 LGVQEKANCIISKD 356
L Q++ C ++ D
Sbjct: 520 LEDQKRWKCRVTGD 533
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 152/330 (46%), Gaps = 65/330 (19%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+MHIG R+ FLL+ L DL + L G L ++QG + + ++ N T++ + + E
Sbjct: 35 SMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEME 94
Query: 65 -------------GVK-PYQSFPTGSH---------------PPRYQPCKTLLNFRDLSG 95
GV+ ++ F SH PP K L+ L G
Sbjct: 95 PFYKEMEANIQRLGVELGFEVFSLVSHSLYNTQRILDLNGGSPPLTY--KRFLHILSLLG 152
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQR------EVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
P P R+VT +E QR ++ VP P PE L W
Sbjct: 153 DPEVP-----VRNVT----AEDFQRCRAPDPGLAECYRVPLPVDLKISPE-----SLSPW 198
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGETE L +L L+ + + SF + N + P TG S GCLSVR F+
Sbjct: 199 RGGETEGLQRLERHLTDQGWVTSFTKPRTVPNSLLPSTTG----LSPYFSMGCLSVRTFF 254
Query: 208 WALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+ L + + H PP ++ GQL+WRE+FYT+++ P + QM NPICL I W ++
Sbjct: 255 YRLSNIYAQAKHHSLPP--VSLQGQLLWREFFYTVASATPNFTQMAGNPICLQICWYKDA 312
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
+ L+ WK QTG+P+IDA+M QLR+
Sbjct: 313 -----ERLHKWKTAQTGFPWIDAIMTQLRQ 337
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 132/294 (44%), Gaps = 83/294 (28%)
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQ-SAALKFGCLSVRRFY 207
+GGE+ A+ +L++ E + G + + SP + GP T+ SA L FGCLS R F+
Sbjct: 339 IGGESAAMKRLDDFCEDE---RRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSAREFF 395
Query: 208 W-ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW--LP 264
+ + H P+ + GQL+WRE+FY +D E NP C I W L
Sbjct: 396 YRIMFIQLQYPHRPGLPTQVTLEGQLMWREFFYCYMCGTRNFDSQELNPSCKQIDWRLLN 455
Query: 265 E---SHPNKE----------------KYLNAWKNGQTGYPFIDAVMRQL----------R 295
E SHP + + L WK+G+TG+P+IDAVMRQ+ R
Sbjct: 456 EYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTHHAGR 515
Query: 296 RLLDC---------------TY-------CVCPVNFG----------------------- 310
+ C TY P+N G
Sbjct: 516 HAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSASCFFTNYRRMASPSTF 575
Query: 311 -RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+R D G +I++Y+P LR P +Y++EPWKAPL VQ A+C+I K+YP IV+
Sbjct: 576 PQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLIGKNYPFPIVD 629
>gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis]
gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis]
Length = 253
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 105/232 (45%), Gaps = 67/232 (28%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQSAALKFGCLSVRRFY 207
W GGETEAL +L L ++ G S +++P L T S L+FGCLS R FY
Sbjct: 26 WPGGETEALARLERHLERKAWVASFG---SPKMTPKSLLASQTGLSPYLRFGCLSARLFY 82
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
L D + I + PP ++ GQL+WRE+FY + NP +D+M NPIC+ IPW
Sbjct: 83 HQLADLYRKIKKSNPP--LSLQGQLLWREFFYCAATRNPNFDRMHNNPICVQIPW----D 136
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------- 296
N E L W NGQTGYP+IDA+MRQLR
Sbjct: 137 VNAEA-LAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMKV 195
Query: 297 ----LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRY 323
LLD + V CPV FGR+ DP G +I +
Sbjct: 196 FDELLLDADWSVNAGSWMWLSCSSFFQQFFHLYCPVRFGRKADPSGDFISSF 247
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 130/526 (24%), Positives = 200/526 (38%), Gaps = 145/526 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPIS--------------IFQK---- 47
+G NR++FLLE ++D + QLF+++G P + +++K
Sbjct: 47 VGPNRWKFLLESMSDTSAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDP 106
Query: 48 --LKRELNFTKLCFEQ-------------DCEGV------KPYQSF-------------P 73
++R+ KL + D E + KPY S+ P
Sbjct: 107 YTMERDKAVEKLAKDAGVKVHVVHGHTLYDAEAIEAKTKGKPYVSYGPFVKILEGLPQPP 166
Query: 74 TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQ 133
P P + DL R + +D +E+ E ++ + P+
Sbjct: 167 RPIDAPSSLPNPGPTDLADLK----RSEHSVDTWKKN-DNNAENRDGEDKIYASFTGPDG 221
Query: 134 FHKYPEMD-FGDPLIRWL--GGETEALIKLNERLS--QEIESFKSGVYLSNQVSPDLTGP 188
P M+ G + GGETEAL +L + + I +F+ P T
Sbjct: 222 KFSVPTMEELGMAKATGIHPGGETEALKRLEAYMKDKEAIINFEKPKTNPGAFDPAAT-- 279
Query: 189 PTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
T S LKFG LSVR FYW L D +PP ++ GQ +WRE+F+ P +
Sbjct: 280 -TVLSPYLKFGALSVRTFYWRLQDVVKGTKHTQPP--VSLIGQCLWREFFHYNMRVTPNW 336
Query: 249 DQMEKNPICLNIPW-------------------LPESHPNKEKYLNAWKNGQTGYPFIDA 289
++ NPIC I W L + EK L AW +GQTG+P+IDA
Sbjct: 337 HEIRGNPICKYIDWRLDDRYDDKGEPIPRSEWKLSDEEKEAEKVLEAWTHGQTGFPWIDA 396
Query: 290 VMRQL-----------------------------------RRLLDCTYCVCPVNF----- 309
+MRQL R L+D + N+
Sbjct: 397 IMRQLKMHGWIHHLARHSVACFLTRGHAYISWVRGKEVFERWLIDHDPAMNTGNWMWLSA 456
Query: 310 ---------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
G D G I+ + PEL + P +YIYEPWKAP+ V ++A +
Sbjct: 457 SAFYSQWFRVYGMAYGSNWDKSGALIREFCPELNKLPDKYIYEPWKAPVSVLKEAGVTLG 516
Query: 355 KDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASL 400
+ YP I + A E + + K + I+ D+ E ++N A +
Sbjct: 517 QTYPRPIFDDKAAKAETQAKM-KNAYHVNIHGDH-EAVLNGTAAKM 560
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 143/318 (44%), Gaps = 48/318 (15%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ +G NR +FLLE L DLDR L S G +L +V G+PI + KLCFE D
Sbjct: 48 PGSARVGINRIQFLLESLQDLDRNLSSRGSKLLLVHGNPI--------QWRIRKLCFEFD 99
Query: 63 CE-----------------GVKPYQSFPTGSHPPRY----QPCKTLLNFRDL-SGLPPRP 100
E G++ + S P K L F+ L P
Sbjct: 100 TEPYALDRDAKIKEHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPAT 159
Query: 101 KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL 160
K + G S ++ + VP P + DF + + GGET L +L
Sbjct: 160 KP------IGNGPSSIPPTGDLHGIKVVPVP-TLEELGYTDFHEDFSPFRGGETVGLTRL 212
Query: 161 NERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+ L+ E + F+ + + T S LKFGCLS R FY + + ++
Sbjct: 213 EDSLANEKWVCEFEKP---KGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVYSRAK 269
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
P ++ QL+WRE+FYT + +D+M NP C IPW + ++ L+AW+
Sbjct: 270 SFTSPP-VSLEAQLLWREFFYTAAYATANFDKMVGNPTCKQIPW-----KDDDELLSAWR 323
Query: 279 NGQTGYPFIDAVMRQLRR 296
+G+TGYP+IDA M QLR+
Sbjct: 324 DGRTGYPWIDAAMTQLRK 341
>gi|346324524|gb|EGX94121.1| cryptochrome-2 [Cordyceps militaris CM01]
Length = 902
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 123/471 (26%), Positives = 186/471 (39%), Gaps = 127/471 (26%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---- 62
G NR++FLL+C DL + + +LF+++ +P ++F K+ + T L FE+D
Sbjct: 50 GLNRWQFLLDCQNDLSTSITKLNSKSKLFLLREAPQTVFPKIFKAWGVTHLVFEKDTDAY 109
Query: 63 ---------------------CEG---------VKPYQSFPTGSHPPRYQPCKTLLNFRD 92
C G V PT S + Q L D
Sbjct: 110 PLERDAIVKAAAKDAGVKVITCSGRTLWDSDAIVAKNNGKPTMS-TTQLQSAGKKLGAID 168
Query: 93 L-----SGLPPRPKEDIDFRHVTFGTM----SESLQREVSLFQTVPKPE---QFHKYPEM 140
S LP + +DF H + SE ++ + ++++ P+ E+
Sbjct: 169 RPIPAPSSLPDPGEMPLDFEHEQPTSKPDANSERRTKKDTEYRSIAGPKGDFSIETMEEL 228
Query: 141 DFGDPLIRWLGGETEALIKLNE--RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
F GGET AL L++ + + +F+ Q P T T S L F
Sbjct: 229 GFPSATTPHKGGETRALKLLDDIAKDKKYTATFEKPKTSPAQFEPQST---TLLSPFLHF 285
Query: 199 GCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPIC 257
G LSVR FYW + D + +G ++TGQL +R+ YF +A P + Q N C
Sbjct: 286 GALSVREFYWRVQDIVDKYGKGASMPPASLTGQLFFRDMYFAAQAAIGPKFTQTLGNDHC 345
Query: 258 LNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------ 295
IPW LP P E++ WK G TG+P+IDA+MRQLR
Sbjct: 346 RFIPWHLPSKVDEETGLSTGEYRVDSPEAEQWFQRWKVGMTGFPWIDALMRQLRHDGWIH 405
Query: 296 -------------------------------------------RLLDCTY-------CVC 305
+ L CT
Sbjct: 406 HLGRHSVACFLTRGGCYVDWERGAEVFEEYLLDHEPACNAGNWQWLSCTAFFSQYFRMYS 465
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV+F ++ D +G +++R+VPEL+ +YIYEPWKAPL Q++A ++ D
Sbjct: 466 PVSFPQKWDKNGDFVRRWVPELKDLSAKYIYEPWKAPLLDQKQAGVRVTGD 516
>gi|340518659|gb|EGR48899.1| DNA photolyase [Trichoderma reesei QM6a]
Length = 628
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 182/480 (37%), Gaps = 143/480 (29%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC-- 63
+G NRF+FLL+C DL + + + +LF+++ P ++F KL T L FE+D
Sbjct: 49 VGVNRFQFLLDCQNDLSQSITKLNKKSKLFVLREGPQTLFPKLFEAWKPTHLVFEKDTDT 108
Query: 64 --------------------------------EGVKPYQSFPTGSHP----------PRY 81
E V + PT + P
Sbjct: 109 YARTRDEAVVKAAKEAGVEVITRSGRTLWDSDEIVAHHDGKPTMTIAALQAAGKKIGPVA 168
Query: 82 QPCKTLLNFRDLSGLP-------PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE-- 132
+P + D +P P PK DI+ H T RE + ++ + P
Sbjct: 169 KPIPAPKSLPDPGDMPVDFEQHRPDPKPDINESHKT---------REDTAYKHISGPNGD 219
Query: 133 -QFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPP 189
E+ F GGET AL +L+E + + I +FK Q P T
Sbjct: 220 FAIETLEELGFAPATTPIRGGETLALERLDELIKDKTYIATFKKPKTSPAQFDPPAT--- 276
Query: 190 TSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYY 248
T S FG LSVR FY + + ++ G ++ GQ+++R+ YF +A +
Sbjct: 277 TLLSPFFHFGALSVRLFYHRVQEVIDSFGPGASSPPESLIGQVLFRDMYFAAQAALGASF 336
Query: 249 DQMEKNPICLNIPW-LPESHP---------------NKEKYLNAWKNGQTGYPFIDAVMR 292
Q NP C +PW LP E + WK G TG+P+IDA+MR
Sbjct: 337 AQTATNPYCRFVPWHLPSKRDPHTGLTTGDHHIDSDQAETWFRRWKAGTTGFPWIDALMR 396
Query: 293 QLRR-----------------------------------LLD----CTY-------CVC- 305
QLR LLD C CV
Sbjct: 397 QLRHDGWIHHLGRHSVACFLTRGGCYVDWERGAEVFEELLLDHEPACNIGNWQWLSCVAF 456
Query: 306 ---------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV+FG++ D DG I+R+VPELR +YIYEPWK PL Q+ A I+ D
Sbjct: 457 FAQYYRVYSPVSFGQKWDRDGALIRRWVPELRNVKPKYIYEPWKMPLPDQKAAGVRITGD 516
>gi|406867153|gb|EKD20192.1| cryptochrome-2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 650
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 117/472 (24%), Positives = 189/472 (40%), Gaps = 127/472 (26%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NR++FL++C D+ + + + +LF+++ +P ++F KL + T L FE+D +
Sbjct: 49 VGTNRWQFLIDCQDDVSKSITKLNEKSKLFLMREAPQTLFPKLFKAWKITHLVFEKDTDA 108
Query: 66 ------VKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV-TFGTMSESL 118
+ ++ + +TL + +L R K + V G +
Sbjct: 109 YARDRDAEIMRAAKEAGVEVIVRSGRTLWDSDELV-KKNRGKPTMSISQVQAAGPKVGPI 167
Query: 119 QREVSLFQTVPKP-------EQFH----------------------KYPEMDFGDPLIRW 149
R + +++P P EQ H P DF P +
Sbjct: 168 PRPIPAPESIPDPGETSLDFEQHHPERDPDFNRRTREKSDKSYESIAGPNGDFAPPTLEE 227
Query: 150 LG----------GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALK 197
LG GET AL L++ ++ E +F+ P T T S L
Sbjct: 228 LGFPAATTPHRGGETVALKALDKLIANEKYTATFEKPNTAPTAFEPQST---TLLSPHLH 284
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY-YDQMEKNPI 256
FG L +R FYW + D ++ ++TGQL++R+ ++ A Y + Q N
Sbjct: 285 FGSLGIREFYWRVQDVVDSFSGKASGPPVSLTGQLLFRDMYFGAQASLGYAFGQTMYNSH 344
Query: 257 CLNIPW-------------LPESH---PNKEKYLNAWKNGQTGYPFIDAVMRQLRR---- 296
C IPW + E H P E++ WKNG TG+P+IDA+MRQL++
Sbjct: 345 CRFIPWHLPSKVNHDTKLVMGEYHIDSPQAEEWFQRWKNGVTGFPWIDALMRQLKQEGWI 404
Query: 297 -------------------------------LLD--------------CTY-------CV 304
LLD CT C
Sbjct: 405 HHLGRHAVACFLTRGGCYISWERGAEVFEELLLDHETACNAGNWQWLSCTAFFAQFYRCY 464
Query: 305 CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV F ++ D +G ++++YVPEL + ++IYEPW+APL Q+KA + D
Sbjct: 465 SPVAFPQKWDKEGKFVRKYVPELAKLDKKFIYEPWRAPLSEQKKAGVSVKGD 516
>gi|413936068|gb|AFW70619.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 397
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 147/325 (45%), Gaps = 53/325 (16%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV---QGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD +L+ G +L ++ ++ LK + N KLCF
Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEGV-----KPYQSFPTGSHPPRYQPCKTLL-------------------NFRDLSG 95
E D E K F S P L +F ++G
Sbjct: 120 ESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAG 179
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD----PLIRWLG 151
PP P + G E ++ +P P E+ +GD + + G
Sbjct: 180 EPPAPAMEEYSELPPLGDTGE--------YELLPVP----TVEELGYGDISQEEIPPFHG 227
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ E L Q E S + T S LKFGCLS R FY +
Sbjct: 228 GETEALRRMKESL-QNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQ 286
Query: 212 D-HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
D H + + +PP ++TGQL+WR++FYT+S P +D+M+ N IC IPW
Sbjct: 287 DVHRSVRNHTKPP--VSLTGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPW-----SEN 339
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR 295
E AW++GQTGYP+IDA+M QLR
Sbjct: 340 EDLFVAWRDGQTGYPWIDAIMIQLR 364
>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
Length = 655
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 183/474 (38%), Gaps = 131/474 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
+G NR+++LL+C DL + + +LF+++ +P ++F KL + T L FE+D +
Sbjct: 49 VGPNRWQYLLDCQNDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHLVFEKDTDA 108
Query: 65 ----------------GVK-----------PYQSFPTGSHPPRYQPCKTLLNFRDLSGLP 97
GV+ P + P + + + +P
Sbjct: 109 YARERDDKVLEIAKKAGVEVVVKTGRTLYDPDELVMQNHGKPTMSITQVQAAGKKIGRIP 168
Query: 98 ---PRPKE-----DIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKY--PEMDFGDPLI 147
P PK D D + F Q +V+ Q + P DF P +
Sbjct: 169 RPIPAPKSIPNPGDTDLK---FDQERPESQPDVNAIQRDGHEASYTALAGPNSDFAVPTM 225
Query: 148 RWLG----------GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAA 195
LG GETEAL L+E ++ E +F+ P T T S
Sbjct: 226 EELGLKPATTAHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQST---TLLSPH 282
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKN 254
+ FG LS R FYW D + ++TGQL++R+ YF +A + Q N
Sbjct: 283 MHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNN 342
Query: 255 PICLNIPW-LPESHPNK---------------EKYLNAWKNGQTGYPFIDAVMRQLR--- 295
P C IPW LP K E + WK+GQTG+P+IDA+MRQL
Sbjct: 343 PNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQLAQEG 402
Query: 296 ----------------------------------------------RLLDCTY------- 302
+ L CT
Sbjct: 403 WIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYR 462
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
C P+ F ++ D +G ++++YVPEL +F +YIYEP KAP+ Q+K C+I D
Sbjct: 463 CYSPIAFPQKWDKEGEFVRKYVPELARFDKKYIYEPHKAPIVDQKKWGCLIKGD 516
>gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus]
Length = 266
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 61/184 (33%)
Query: 250 QMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------- 296
+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 1 RMEGNPICIQIPW--DKNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVA 55
Query: 297 ----------------------LLDCTY---------------------CVCPVNFGRRL 313
LLD + C CPV FGRR
Sbjct: 56 CFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRT 115
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
DP G Y+KRY+P+L+ FP +YIYEPW AP VQ+ A CII DYP+ +VNH + S N +
Sbjct: 116 DPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIE 175
Query: 374 YLKK 377
+K+
Sbjct: 176 RMKQ 179
>gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864]
Length = 559
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 48/234 (20%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGET +++ L + + + ++ P L P+S S L+FGC+S RRF++
Sbjct: 196 GGETAGQARMHHYLG---DLARVANFSKPELDPTLFEEPSSSVMSPYLRFGCVSPRRFFF 252
Query: 209 ALHDHFNTIHEGRPPSH--FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
++ + I G P+ ++ GQL WRE+FY ++A P +D+ NPIC I W +
Sbjct: 253 EINKVY--IDSGVTPTQPPVSLLGQLYWREFFYLVAAGTPNFDRAAGNPICKQIQW--DV 308
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPE 326
+P +YL AW DP+G +++R+VP
Sbjct: 309 NP---EYLAAW----------------------------------HYDPEGKFVRRFVPA 331
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
LR FP +YIY PW APL VQ +A CI+ DYP+ IV+H Q N + ++ A
Sbjct: 332 LRNFPSEYIYMPWSAPLEVQREAGCIVGVDYPKPIVDHEQVCRTNMERMRDAYA 385
>gi|226494726|ref|NP_001146620.1| uncharacterized protein LOC100280217 [Zea mays]
gi|219888051|gb|ACL54400.1| unknown [Zea mays]
Length = 421
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 147/325 (45%), Gaps = 53/325 (16%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV---QGSPISIFQKLKRELNFTKLCF 59
PG+ G R RFLLE L+DLD +L+ G +L ++ ++ LK + N KLCF
Sbjct: 61 PGSARAGVARIRFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALK-DWNIGKLCF 119
Query: 60 EQDCEGV-----KPYQSFPTGSHPPRYQPCKTLL-------------------NFRDLSG 95
E D E K F S P L +F ++G
Sbjct: 120 ESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIAG 179
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD----PLIRWLG 151
PP P + G E ++ +P P E+ +GD + + G
Sbjct: 180 EPPAPAMEEYSELPPLGDTGE--------YELLPVP----TVEELGYGDISQEEIPPFHG 227
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL ++ E L Q E S + T S LKFGCLS R FY +
Sbjct: 228 GETEALRRMKESL-QNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQ 286
Query: 212 D-HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
D H + + +PP ++TGQL+WR++FYT+S P +D+M+ N IC IPW
Sbjct: 287 DVHRSVRNHTKPP--VSLTGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPW-----SEN 339
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR 295
E AW++GQTGYP+IDA+M QLR
Sbjct: 340 EDLFVAWRDGQTGYPWIDAIMIQLR 364
>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 655
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 182/474 (38%), Gaps = 131/474 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE- 64
+G NR+++LL+C DL + + +LF+++ +P ++F KL + T + FE+D +
Sbjct: 49 VGPNRWQYLLDCQDDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHMVFEKDTDA 108
Query: 65 ----------------GVK-----------PYQSFPTGSHPPRYQPCKTLLNFRDLSGLP 97
GV+ P + P + + + +P
Sbjct: 109 YARERDDKVLEIARKSGVEVVVKTGRTLYDPDELVKQNHGKPTMSITQVQAAGKKIGRIP 168
Query: 98 ---PRPKE-----DIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKY--PEMDFGDPLI 147
P PK D D + F Q +V+ Q + P DF P +
Sbjct: 169 RPIPAPKSFPNPGDTDLK---FDQERPESQPDVNAIQRDGDEASYTALAGPNGDFAVPTM 225
Query: 148 RWLG----------GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAA 195
LG GETEAL L+E ++ E +F+ P T T S
Sbjct: 226 EELGLKPATTAHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQST---TLLSPH 282
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKN 254
+ FG LS R FYW D + ++TGQL++R+ YF +A + Q N
Sbjct: 283 MHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNN 342
Query: 255 PICLNIPW-LPESHPNK---------------EKYLNAWKNGQTGYPFIDAVMRQLR--- 295
P C IPW LP K E + WK+GQTG+P+IDA+MRQL
Sbjct: 343 PNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQLAQEG 402
Query: 296 ----------------------------------------------RLLDCTY------- 302
+ L CT
Sbjct: 403 WIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYR 462
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
C P+ F ++ D +G +++YVPEL +F +YIYEP KAP+ Q+K C+I D
Sbjct: 463 CYSPIAFPQKWDKEGKLVRKYVPELAKFDKKYIYEPHKAPIVDQKKWGCLIKGD 516
>gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis]
Length = 278
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 92/183 (50%), Gaps = 61/183 (33%)
Query: 251 MEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------- 296
ME NPIC+ IPW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 1 MEGNPICVQIPW--DKNP---EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVAC 55
Query: 297 ---------------------LLDCTY---------------------CVCPVNFGRRLD 314
LLD + C CPV FGRR D
Sbjct: 56 FLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 115
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQY 374
P+G YI+RY+P LR FP +YIY+PW AP G+Q+ A C+I +YP+ +VNH +AS N +
Sbjct: 116 PNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIER 175
Query: 375 LKK 377
+K+
Sbjct: 176 MKQ 178
>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 124/465 (26%), Positives = 177/465 (38%), Gaps = 150/465 (32%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC DL + + +L++V+ +P ++F KL + T L FE D
Sbjct: 50 VRVGPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 109
Query: 64 EG----------------------------------VKPYQSFPTGSHPPRYQPCKTLLN 89
+G VK + PT S + + + N
Sbjct: 110 DGYARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINN 169
Query: 90 FRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
G+P RP +D + E R++S P+ DF P +
Sbjct: 170 -----GVPDRP---VDAPERIPDPLGEEKMRDIS--------------PKGDFSIPTLDE 207
Query: 150 L------------GGETEALIKLNERLSQE---IESFKSGVYLSNQVSPDLTGPPTSQSA 194
L GGE+ AL L L Q I +F+ P T T S
Sbjct: 208 LSIDPSQATSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQAT---TLLSP 264
Query: 195 ALKFGCLSVRRFYWALHDHFNTIHEGRPPSH---FNITGQLIWREYFYTM-SAHNPYYDQ 250
L FG LSVR+F+ + D P+ N+ GQL++RE F+ +A P Y Q
Sbjct: 265 HLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQ 324
Query: 251 MEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------- 296
N I E + WK G+TG+P+IDA+MRQL+
Sbjct: 325 TRGNKIV---------RFQAEVWFRRWKEGRTGFPWIDALMRQLKNEGWIHHLGRHSVAC 375
Query: 297 -----------------------------------LLDCTY-------CVCPVNFGRRLD 314
L CT C PV FG++ D
Sbjct: 376 FLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFTQYNRCYSPVAFGKKWD 435
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
P+G +I+ Y+PEL + +YIYEPWKAPL Q++ K YPE
Sbjct: 436 PEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRW-----KSYPE 475
>gi|358385715|gb|EHK23311.1| putative photolyase class 1 [Trichoderma virens Gv29-8]
Length = 627
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/470 (25%), Positives = 183/470 (38%), Gaps = 125/470 (26%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG- 65
G NR++FLL+C DL + + + +LF+++ P ++ KL + T L FE+D +
Sbjct: 50 GVNRWQFLLDCQNDLSQSITKLNKNSKLFVLREGPQTLLPKLFKAWKPTHLVFEKDTDAY 109
Query: 66 --------------------VKPYQSFPTGSHPPRYQPCKTLLNFRDLSG---------- 95
++P ++ ++ K ++ L
Sbjct: 110 ARSRDEAVAKAAKAAGVEVIIRPGRTLWDSDDIVKHHGGKPTMSITQLQAAGKKIGPVAK 169
Query: 96 -------LPPRPKEDIDF-RHV--TFGTMSESLQREVSL-FQTVPKPE---QFHKYPEMD 141
LP +DF RH+ T +ES + E ++ + P E+
Sbjct: 170 PIPAPESLPDPGDMPVDFERHLPETKPDFNESYRSEEDTEYKHIAGPNGDFAIETLEELG 229
Query: 142 FGDPLIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFG 199
F GGET AL L+E L + +F+ Q +P T T S FG
Sbjct: 230 FPPATTPHRGGETRALKALDELLKDKKYTATFQKPKTSPAQFNPQST---TLLSPFFHFG 286
Query: 200 CLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICL 258
LSVR FYW +H + + ++ GQ+++R+ YF +A + Q NP C
Sbjct: 287 ALSVRLFYWRVHAIVESYGKAASSPPESLIGQVLFRDMYFAAQAALGASFAQTAMNPYCR 346
Query: 259 NIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
IPW LP + E + WK G TG+P+IDA+MRQLR
Sbjct: 347 FIPWHLPSKRDPDTGLATGDHHIDNQQAETWFQRWKAGVTGFPWIDALMRQLRHDGWIHH 406
Query: 296 ------------------------------------------RLLDCTY-------CVCP 306
+ L CT C P
Sbjct: 407 LGRHSVACFLTRGGCYVDWERGAEVFEEWLIDHEPACNIGNWQWLSCTAFFTQYFRCYSP 466
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
V+FG++ D DG I+++VPEL + +YIYEPWK PL Q++A ++ D
Sbjct: 467 VSFGQKWDKDGALIRQWVPELSRVKAKYIYEPWKMPLFDQKEAGVRVTGD 516
>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
Length = 604
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 120/468 (25%), Positives = 186/468 (39%), Gaps = 130/468 (27%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG--- 65
G NR++FL + L+ + K LF+++ +P ++F KL + T L FE+D +
Sbjct: 50 GTNRWQFL--SITKLNPKSK-----LFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYAR 102
Query: 66 -------------------------------VKPYQSFPTGSHPPRYQPCKTLLNF-RDL 93
V + PT S K + R +
Sbjct: 103 QRDDVVAKAAKEAGVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVGQVPRPI 162
Query: 94 S---GLPPRPKEDIDF-RHVTFGT---MSESLQREVSLFQTVPKPE---QFHKYPEMDFG 143
+ GLP +DF +HV +++ +++ + ++++ P+ E+ F
Sbjct: 163 AAPKGLPDPGDMPLDFEQHVPSNAPDVNAQAREKKDTAYKSIAGPKGDFAIETLEELGFP 222
Query: 144 DPLIRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCL 201
+ GGE+ AL L E + + +F+ Q P T T S L FG L
Sbjct: 223 AATTPYRGGESIALKDLAEIIENKKYTATFEKPKTSPAQFEPQST---TLLSPFLHFGAL 279
Query: 202 SVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNI 260
SVR FYW + D +G ++TGQLI+R+ YF +A + Q NP C I
Sbjct: 280 SVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFI 339
Query: 261 PW-LPESHPNK---------------EKYLNAWKNGQTGYPFIDAVMRQL---------- 294
PW LP ++ EK+ WK G TG+P+IDA+MRQL
Sbjct: 340 PWHLPSERDSQTGLVTDKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQLVHTGWMHHLG 399
Query: 295 ---------------------------------------RRLLDCTY-------CVCPVN 308
+ L CT C PV+
Sbjct: 400 RHSVACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFSQYFRCYSPVS 459
Query: 309 FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
FG++ D +G I+++VPEL+ +YIYEPWKAP+ Q+KA + D
Sbjct: 460 FGQKWDKNGDLIRKWVPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGD 507
>gi|451997801|gb|EMD90266.1| hypothetical protein COCHEDRAFT_1139413, partial [Cochliobolus
heterostrophus C5]
Length = 650
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 187/473 (39%), Gaps = 129/473 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NR+++L++C DL + + +LF+++ +P ++F KL + N T L FE+D +
Sbjct: 49 VGPNRWQYLIDCQNDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDA 108
Query: 66 ------VKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLP------------------ 97
K + + +TL + DL +G P
Sbjct: 109 YARERDAKVMEIAKQAGVDVITKTGRTLYDPDDLVKNNNGKPTMSMAQVQAAAKKIGPVP 168
Query: 98 ---PRPKE--DIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKY--PEMDFGDPLIRWL 150
P PK D H+ F Q +++ Q K + P DF P + L
Sbjct: 169 RPIPAPKTLPDPGEVHLEFDQEKPESQPDINSIQRDGKEASYTALAGPNGDFAVPTMEEL 228
Query: 151 G----------GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
G GET AL L++ ++ E +F+ P T T S + F
Sbjct: 229 GLKPATTPHRGGETIALQALDKIIANEKYTATFEKPNTAPTAFEPQST---TLLSPHMHF 285
Query: 199 GCLSVRRFYWALHDHFNTIH--EGRPPSHFNITGQLIWREYFYTMSAHNPY-YDQMEKNP 255
G LS R FYW D + +PP+ ++TGQL++R+ ++ A Y + Q N
Sbjct: 286 GSLSCRLFYWRAQDVADKYKGKASQPPT--SLTGQLLFRDMYFGAQASLGYSFGQTYNNS 343
Query: 256 ICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---- 295
C IPW LP + E + WK G+TG+P+IDA+MRQL
Sbjct: 344 HCRFIPWHLPSKIDASSGLITGEYTIDNAEAESHFQRWKQGRTGFPWIDALMRQLAQEGW 403
Query: 296 ---------------------------------------------RLLDCTY-------C 303
+ L CT C
Sbjct: 404 IHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFAQFYRC 463
Query: 304 VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV F ++ D +G +I+RYVPEL +F +YIYEP KAP+ Q+K C+I D
Sbjct: 464 YSPVAFPQKWDKEGNFIRRYVPELAKFDKKYIYEPHKAPIADQKKWGCLIKGD 516
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 184/443 (41%), Gaps = 70/443 (15%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV- 66
I NR+ FL ECL LDRQL+ G +LF+++G I + +L E + +L FE++ E
Sbjct: 46 ISANRWNFLCECLEALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAG 105
Query: 67 ----KPYQSFPTGSHPPRYQPCKTLL----------------NFRDLS------GLPPRP 100
Q ++ Q LL F +++ G P P
Sbjct: 106 RQRDTVIQMLAENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPP 165
Query: 101 KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL 160
+ +D FG + + + VP+ F E+ + W GGE EA+ +L
Sbjct: 166 CQTVD--KTVFGACITPVGLDHAEKYGVPQLSDFGG-KELGRATAKLFWKGGELEAMRRL 222
Query: 161 NERLSQEIESFKSGVYLSNQVSPD-LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
N L ++ ++ +S D L + S ++FGCLS L +
Sbjct: 223 NLALQKK-------KFIKPPLSADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTMG 275
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
+PP + L+WRE+F+ ++ NP + +M NP+ L IPW E HP + L+ WK
Sbjct: 276 SKPPE--TLYTNLLWREFFFATASTNPDHHRMMGNPLALQIPW--EQHP---EALSLWKQ 328
Query: 280 GQTGYPFIDAVMRQLRR----------------LLDCTYCVCPVNFGR--RLDPDGIYIK 321
G+TG+P+IDA+MRQLR C + F L D +
Sbjct: 329 GKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSL 388
Query: 322 RYVPELRQFPIQYIYE--PWKAPLGVQEKANCI---ISKDYPE--RIVNHVQASLENKQY 374
L Y++ PW P+ V ++ + I PE R+
Sbjct: 389 NAGNWLWLSCSSYVHGAVPWYCPVEVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPS 448
Query: 375 LKKEKANCIINKDYPERIVNHVQ 397
+ +A CI+ KDYP+ +VNH++
Sbjct: 449 SVQREAGCIVGKDYPQPMVNHLE 471
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 127/288 (44%), Gaps = 68/288 (23%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GGE+ AL +L + ++ ++ + +++ P T+ S L GC+S R + A
Sbjct: 244 GGESYALDRLQKTITAR-PNWTAQYEKPKTSCTEVSDPSTTVLSPYLSIGCISPRTVWHA 302
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTM-----SAHNPYYDQMEKNPICLNIPWLP 264
+ R ++ GQL+WR++ M S H + Q++ N C +IPW
Sbjct: 303 IETANKQAKTNRTQPPVSLHGQLLWRDFNNLMAHSANSQHAGSWGQIKNNAFCRDIPW-- 360
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR----------------------------- 295
S PN L++WK G+TGYP+IDA M QLR
Sbjct: 361 SSDPN---MLSSWKEGRTGYPWIDACMAQLRSEGWIHHLGRHAVACFLTRGDLWQSWVEG 417
Query: 296 ------RLLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELR 328
LLD Y C P+ F ++ DP+G YI+++VPEL
Sbjct: 418 ADHFEAELLDADYALNSFNWMWLSASGFFYQYFRCYSPIQFQKKNDPNGNYIRKWVPELA 477
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
+ P ++IYEPWKA + + + A + K YP IV+H S EN +K
Sbjct: 478 EMPAKHIYEPWKANVSILKTAGVKLGKTYPRPIVDHAVVSKENMSKMK 525
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPY 69
NR RFLLEC DLD LK G +L++ G P+ + ++ ++ T + E D G +PY
Sbjct: 58 NRARFLLECCQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGVTHMTHESDETG-EPY 115
>gi|451847270|gb|EMD60578.1| hypothetical protein COCSADRAFT_244496 [Cochliobolus sativus
ND90Pr]
Length = 654
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 188/478 (39%), Gaps = 139/478 (29%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NR+++L++C DL + + +LF+++ +P ++F KL + N T L FE+D +
Sbjct: 49 VGPNRWQYLIDCQNDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDA 108
Query: 66 ------VKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHVTFGTMS 115
K + + +TL + DL +G P + G
Sbjct: 109 YARERDAKVMEIAKQAGVDVITKTGRTLYDPDDLVKNNNGKPTMSMAQVQAAAKKIG--- 165
Query: 116 ESLQREVSLFQTVPKPEQFH-----------------------------KYPEMDFGDPL 146
+ R + +++P P + H P DF P
Sbjct: 166 -PVPRPIPAPKSLPDPGEVHLQFDQEKPESHPDINSIQRDGNEASYTALAGPNGDFAVPT 224
Query: 147 IRWLG----------GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSA 194
+ LG GET AL L++ ++ E +F+ P T T S
Sbjct: 225 MEDLGLKLATTPHRGGETVALQALDKIIADEEYTATFEKPNTAPTAFEPQST---TLLSP 281
Query: 195 ALKFGCLSVRRFYWALHDHFNTIHEGR---PPSHFNITGQLIWREYFYTMSAHNPY-YDQ 250
+ FG LS R FYW D + ++GR PP+ ++TGQL++R+ ++ A Y + Q
Sbjct: 282 HMHFGSLSCRLFYWRAQDVADK-YKGRASQPPT--SLTGQLLFRDMYFGAQASLGYSFGQ 338
Query: 251 MEKNPICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
N C IPW LP + E + WK G+TG+P+IDA+MRQL
Sbjct: 339 TYNNSHCRFIPWHLPSKVDTSSSLITGEYTIDNAEAESHFQRWKQGRTGFPWIDALMRQL 398
Query: 295 R-------------------------------------------------RLLDCTY--- 302
+ L CT
Sbjct: 399 AQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFA 458
Query: 303 ----CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
C PV F ++ D +G +I+RYVPEL +F +YIYEP KAP+ Q+K C+I D
Sbjct: 459 QFYRCYSPVAFPQKWDKEGNFIRRYVPELAKFDKKYIYEPHKAPIADQKKWGCLIKGD 516
>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
Length = 685
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 121/281 (43%), Gaps = 79/281 (28%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGET AL L+E ++ + +F+ Q P T T S L FG LSVR FYW
Sbjct: 291 GGETLALKALDEIIADKKYTATFQKPKTSPAQFEPQAT---TLLSPHLHFGSLSVREFYW 347
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LP-- 264
+ D ++ P ++ GQL++R+ YF +A + Q NP C IPW LP
Sbjct: 348 RVKDVVDSYKGASSPPE-SLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSK 406
Query: 265 ----------ESHPNKEK---YLNAWKNGQTGYPFIDAVMRQLR---------------- 295
E H + E+ + WK G TG+P+IDA+MRQL+
Sbjct: 407 RDPETGLVTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACF 466
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L C+ C PV FG++ D
Sbjct: 467 LTRGGCYIDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFSQYFRCYSPVAFGQKWDK 526
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
G +I+RYVPEL+ +YIYEPWKAPL Q+KA + D
Sbjct: 527 KGEFIRRYVPELKNMDAKYIYEPWKAPLTDQKKAGVRVKGD 567
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
G NR++FLL+C DL + + + +LF+++ +P ++F KL + T + FE+D +
Sbjct: 102 GLNRWQFLLDCQNDLSKSITKVNSNSKLFVLREAPQTLFPKLFKAWKVTHIVFEKDTD 159
>gi|402076336|gb|EJT71759.1| cryptochrome-1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 661
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 134/323 (41%), Gaps = 88/323 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGET AL +L+E ++ + + + Q SP PP++ S L FG LSVR FY
Sbjct: 247 GGETLALQRLDELMADQE---YTATFRKPQSSPADFDPPSTTLLSPFLHFGALSVRLFYH 303
Query: 209 ALHDHFNTIHEGR------PPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIP 261
+ D + + R PP ++TGQL++R+ YF +A + Q NP C IP
Sbjct: 304 RVQDAVDAYVKSRKKGASQPPE--SLTGQLLFRDMYFAAQAAIGDVFGQTAGNPRCRFIP 361
Query: 262 W-LPE----------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--------- 295
W LP E + W+ G+TG+P+IDA+MRQLR
Sbjct: 362 WHLPSRLEGDAGPLRSFAYDVDSAQAEDWFRRWEAGRTGFPWIDALMRQLRVEGWIHHLG 421
Query: 296 ----------------------------------------RLLDCTY-------CVCPVN 308
+ L CT C PV+
Sbjct: 422 RHSVACFLTRGGCYVSWERGLDVFEELLLDHEPSCNAGNWQWLSCTAFFSQYFRCYSPVS 481
Query: 309 FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQAS 368
FGR+ DP+G +++R+VPEL +YIYEPWKAP +A ++ D V V+A
Sbjct: 482 FGRKWDPEGTFVRRWVPELAALDKKYIYEPWKAPEAELRRAGVVLV-DGSGAGVGRVRAE 540
Query: 369 LENKQYLKKEKANCIINKDYPER 391
E ++ D+ ER
Sbjct: 541 SERDDDARRTGTYITPMFDFDER 563
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
G NR++FLL+C DL + +LF+++ +P ++F KL + + T + FE+D +
Sbjct: 50 GLNRWQFLLDCQNDLSASINKLNPKSKLFVLREAPQTLFPKLFKAWDVTHIVFEKDTD 107
>gi|452848446|gb|EME50378.1| hypothetical protein DOTSEDRAFT_145202, partial [Dothistroma
septosporum NZE10]
Length = 640
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 119/481 (24%), Positives = 184/481 (38%), Gaps = 133/481 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NRF+FL++C DL + + + +LF+++ +++ KL +E T L FE+D +
Sbjct: 49 VGVNRFQFLIDCQNDLSKSITKLNKKSKLFVMREPAVTLLPKLFKEWKITHLVFEKDTDA 108
Query: 66 V------KPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHVTFGTMS 115
+ + + +TL + +L G P + G +
Sbjct: 109 YAKERDQQVVKMAEDAGVEVIVKTGRTLWDPDELVKAHGGKPTMSINQLQAAGAKIGEIE 168
Query: 116 ESLQREVSL------------FQTVPKPEQFHKY--------------PEMDFGDPLIRW 149
++ SL Q P+P+ K+ P+ DF P +
Sbjct: 169 PIVETPTSLPPPGDMKLNIEQTQPAPEPDINKKHRDGEESSYSAGIAGPKGDFAPPSLEE 228
Query: 150 LG----------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS--QSAALK 197
LG GET L +L + L E G + + SP P ++ S L
Sbjct: 229 LGMPAATSPHKGGETVILERLRKILEDED---YCGTFQKPKTSPAAFEPQSTFLTSPYLH 285
Query: 198 FGCLSVRRFYWALHDHFNTIHEGR-----PPSHFNITGQLIWRE-YFYTMSAHNPYYDQM 251
FG LS R FY + + + PP ++ GQL++R+ YF +A + Q
Sbjct: 286 FGALSCRYFYHKIEEIVKKRKKANKTVSTPPE--SLAGQLLFRDMYFAAQAALGYSFGQT 343
Query: 252 EKNPICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR 295
NP C IPW LP P KE W +G TG+P+IDA+MRQLR
Sbjct: 344 YNNPNCRFIPWHLPSKIDLKTKLITGEYEVDDPVKETEFKRWADGTTGFPWIDAIMRQLR 403
Query: 296 -------------------------------------------------RLLDCTY---- 302
+ L CT
Sbjct: 404 QEGWIHHLARHSVACFLTRGGAYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFAQ 463
Query: 303 ---CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
C P+ FG++ DP+G YI++Y PEL P +YI+EP KAP+ Q+ A + D E
Sbjct: 464 FYRCYSPIAFGKKWDPNGDYIRKYCPELADVPAKYIFEPHKAPIADQKSAKVRVDGDGTE 523
Query: 360 R 360
+
Sbjct: 524 K 524
>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 125/281 (44%), Gaps = 78/281 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGET AL L++ ++ + + K + + SP P ++ S L FG LSVR FYW
Sbjct: 239 GGETLALEALDKIIADKKYTAK---FEKPKTSPARFEPQSTTLLSPFLHFGALSVREFYW 295
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LP-- 264
+ + + +G ++ GQL++R+ YF +A + Q KNP C IPW LP
Sbjct: 296 RVQEVVDAYGKGASTPPESLIGQLLFRDMYFAAQAALGDVFMQTVKNPHCRFIPWHLPSK 355
Query: 265 ----------ESHPNKEK---YLNAWKNGQTGYPFIDAVMRQLR---------------- 295
E H + E+ + WK G TG+P+IDA+MRQL+
Sbjct: 356 RDPKTGLVTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQLKEEGWIHHLGRHAVACF 415
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L CT C PV+FG++ D
Sbjct: 416 LTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFSQYFRCYSPVSFGQKWDK 475
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
G +I+RYVPEL+ +YIYEPWKAPL Q+KA + D
Sbjct: 476 QGDFIRRYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGD 516
>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
Length = 308
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GGETEAL +L L E +++ + + L PT S +FGCLS R FY+
Sbjct: 126 WPGGETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYPRFGCLSCRLFYF 183
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 184 KLTDLYRKVKKNSSPP-LSLYGQLLWREFFYTAATNNPCFDKMESNPICVQIPW--DRNP 240
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
L W G+TG+P+IDA+M QLR+
Sbjct: 241 EA---LAKWAEGRTGFPWIDAIMTQLRQ 265
>gi|342883710|gb|EGU84160.1| hypothetical protein FOXB_05337 [Fusarium oxysporum Fo5176]
Length = 637
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 78/281 (27%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGET AL +LN+ ++ + +F+ Q P T T S L FG LSVR FYW
Sbjct: 239 GGETRALKELNKLIADKKYTATFQKPKTNPAQFEPQAT---TLLSPFLHFGALSVRLFYW 295
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LP-- 264
+ + ++ +G ++ GQL++R+ YF +A + Q NP C IPW LP
Sbjct: 296 RVREIVDSYGKGASTPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSK 355
Query: 265 ----------ESHPNKEK---YLNAWKNGQTGYPFIDAVMRQLR---------------- 295
E H + E+ + W+ G TG+P+IDA+MRQL+
Sbjct: 356 RDSETGLITGEYHIDSEEAEIWFRRWRVGMTGFPWIDALMRQLKDEGWIHHLGRHAVACF 415
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L CT C P+ FG++ D
Sbjct: 416 LTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFSQYFRCYSPIAFGQKWDK 475
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
+G +I+RYVPEL+ +YIYEPWKAPL Q+KA I D
Sbjct: 476 EGNFIRRYVPELKNMDSKYIYEPWKAPLPDQKKAGVRIKGD 516
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
G NR++FLL+C DL R + +LF+++ +P ++F KL + T L FE+D +
Sbjct: 50 GLNRWQFLLDCQNDLSRSISQVNPKSKLFVLREAPQTLFPKLFKAWKVTHLVFEKDTD 107
>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
gi|374257344|gb|AEZ01569.1| (6-4)PP photolyase [Metarhizium robertsii]
Length = 566
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/471 (25%), Positives = 185/471 (39%), Gaps = 133/471 (28%)
Query: 12 RFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE----- 64
R L+C DL + +LF+++ +P ++F KL + T L FE+D +
Sbjct: 5 RNHISLDCQNDLSSSITKLNPKSKLFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYARQ 64
Query: 65 --------------------GVKPYQSFPTGSHPPRYQPCKT---LLNFRDLSGLPPRPK 101
G + S +H +P + LL+ G PRP
Sbjct: 65 RDDVVAKAAKAAGVKVVIHSGRTLWDSDEIVAHHDG-KPAMSMTQLLSAAKKVGQVPRPI 123
Query: 102 ED-----------IDF-RHVTFGT---MSESLQREVSLFQTVPKPE---QFHKYPEMDFG 143
+DF +HV +++ +++ + ++++ P+ E+ F
Sbjct: 124 AAPKSLPDPGDMPLDFGQHVPSSVPDVNAQTREKKDTAYKSIAGPKGDFAIETLEELGFP 183
Query: 144 DPLIRWLGGETEAL-----IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
+ GGE+ AL I N++ + E K+ Q P T T S L F
Sbjct: 184 AATTPYRGGESIALKNLADIAKNKKYTATFEKPKTS---PAQFEPQST---TLLSPFLHF 237
Query: 199 GCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPIC 257
G LSVR FYW + D +G ++TGQLI+R+ YF +A + Q NP C
Sbjct: 238 GALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYC 297
Query: 258 LNIPW-LPESHPNK---------------EKYLNAWKNGQTGYPFIDAVMRQLR------ 295
IPW LP ++ EK+ WK G TG+P+IDA+MRQL
Sbjct: 298 RFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQRWKRGVTGFPWIDALMRQLLHTGWIH 357
Query: 296 -------------------------------------------RLLDCTY-------CVC 305
+ L CT C
Sbjct: 358 HLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFSQYFRCYS 417
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV+FG++ D +G I+++VPEL+ +YIYEPWKAP+ Q+KA + D
Sbjct: 418 PVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGD 468
>gi|400602563|gb|EJP70165.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 623
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 119/281 (42%), Gaps = 78/281 (27%)
Query: 151 GGETEALIKLNE--RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGET AL L++ + + +F+ Q P T T S L FG LSVR YW
Sbjct: 239 GGETRALKMLDDIAKDKKYTATFEKPKTSPAQFEPQST---TLLSPFLHFGALSVRELYW 295
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LPE- 265
+ D +G ++TGQL++R+ YF +A P + Q N C IPW LP
Sbjct: 296 RVQDIVTAYGKGASSPPASLTGQLLFRDMYFAAQAAIGPSFTQTNGNGHCKFIPWHLPSK 355
Query: 266 --------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------------- 295
P E++ WK G TG+P+IDA+MRQLR
Sbjct: 356 VDLATGISTGEYRVDSPEAEQWFARWKAGMTGFPWIDALMRQLRHDGWIHHLGRHSVACF 415
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L CT PV+F ++ D
Sbjct: 416 LTRGGCYVDWERGAQVFEEYLLDHEPACNAGNWQWLSCTAFFSQYFRMYSPVSFPQKWDK 475
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
+G +++R+VPEL+ P +YIYEPWKAPL Q++A ++ D
Sbjct: 476 NGDFVRRWVPELKDLPAKYIYEPWKAPLLDQKQAGVRVTGD 516
>gi|358394356|gb|EHK43749.1| DNA photolyase [Trichoderma atroviride IMI 206040]
Length = 625
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/473 (24%), Positives = 180/473 (38%), Gaps = 135/473 (28%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG- 65
G NR++FLL+C DL + + +LF+++ P ++F KL + T L FE+D +
Sbjct: 50 GVNRWQFLLDCQNDLSDSITKLNKNSKLFVLREGPQTLFPKLFKAWKPTHLVFEKDTDAY 109
Query: 66 ---------------------------------VKPYQSFPTGSHP----------PRYQ 82
V+ + PT S P +
Sbjct: 110 GRSRDEAVAKAAQEAGVKVIIRSGRTLWDSDGIVEKHGGKPTMSITQLQAAGKKIGPVAK 169
Query: 83 PCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE---QFHKYPE 139
P F D +P ++ + +H F S + + + + P E
Sbjct: 170 PLPAPERFPDPGDMPVDFEQHVPDKHPDFNAGYRS--EKDTGYNAIAGPNGDFAIETLEE 227
Query: 140 MDFGDPLIRWLGGETEALIKL-----NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSA 194
+ F GGE+ AL L N+R + E K+ Q P T T S
Sbjct: 228 LGFAPATTPHRGGESIALKTLDGLIKNKRYTATFEKPKTS---PAQFEPQST---TLLSP 281
Query: 195 ALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEK 253
FG LSVR FYW +H+ + +G ++ GQ+++R+ YF +A + Q
Sbjct: 282 FFHFGALSVRLFYWRVHEVVESYGKGASTPPASLIGQVLFRDMYFAAQAALGQSFAQTAT 341
Query: 254 NPICLNIPW-LPESH---------------PNKEKYLNAWKNGQTGYPFIDAVMRQL--- 294
N C IPW LP P E++ WK G TG+P+IDA+MRQL
Sbjct: 342 NAYCRFIPWHLPSKRDPETGFATGDYHIDKPKAEEWFQRWKAGVTGFPWIDALMRQLKQE 401
Query: 295 -------RRLLDC------------------------------------TYCVC------ 305
R L C CV
Sbjct: 402 GWIHHLGRHSLACFLTRGGCYVDWERGAEVFEELLIDHEPACNIGNWQWLACVAFFAQYY 461
Query: 306 ----PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
PV+FG++ D +G +I+R+VPEL++ +YIYEPWK PL Q++A ++
Sbjct: 462 RCYSPVSFGQKWDKNGDFIRRWVPELKKVKAKYIYEPWKMPLVDQKQAGVRVT 514
>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
Length = 628
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 119/279 (42%), Gaps = 78/279 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS--QSAALKFGCLSVRRFYW 208
GGET AL L E L+ + + + + SP P ++ S L FG LSVR FYW
Sbjct: 240 GGETRALGMLEEILADKK---YTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYW 296
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LPES 266
+ + +G ++ GQL++R+ YF +A + Q NP C IPW LP
Sbjct: 297 RVRAVVDAYGKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSK 356
Query: 267 HPNK---------------EKYLNAWKNGQTGYPFIDAVMRQLR---------------- 295
K +++ WK G TG+P+IDA+MRQLR
Sbjct: 357 VDAKTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACF 416
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L CT C PV+FG++ D
Sbjct: 417 LTRGGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQYFRCYSPVSFGQKWDK 476
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
G Y++R+VPEL+ +YIYEPWKAPL Q+KA ++
Sbjct: 477 QGAYVRRWVPELKDLDAKYIYEPWKAPLPDQKKAGVRVT 515
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
G NR++FLL+C DL + + +LF+++ P ++F KL + T L FE+D +
Sbjct: 51 GLNRWQFLLDCQNDLSESITKLNSRSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDA 109
>gi|378728105|gb|EHY54564.1| cryptochrome [Exophiala dermatitidis NIH/UT8656]
Length = 987
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 124/296 (41%), Gaps = 96/296 (32%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGET L L +S E I +F+ + P T T S + FG +SVRRF+W
Sbjct: 371 GGETTGLALLAHHISDETYIATFEKPLTAPTAFDPPAT---TMLSPHMHFGSVSVRRFWW 427
Query: 209 ALHDHF---------NTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICL 258
A+ D N I P N+ GQL++R+ YF +A + Q NP+
Sbjct: 428 AVQDVLEQRRRRSLENKISLPISPHPVNLPGQLLFRDMYFAAYAAVGATFGQAVGNPVAR 487
Query: 259 NIPWLPE-------------------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
+PW + S+P E+Y WK G TG+P+IDA+MRQ
Sbjct: 488 FVPWDLQSEASGSSLATSDQLSGRDPTATYMVSNPQAEEYFRRWKYGCTGFPWIDALMRQ 547
Query: 294 LRR-----------------------------------LLD----CTY-------CVC-- 305
LR+ LLD C CV
Sbjct: 548 LRQEGWIHHLGRHAVASFLTRGGCYVSWERGAEVFEEWLLDHEVACNAGNWMWLSCVAFF 607
Query: 306 --------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
PV+F ++ DP+G +++RYVPEL F +YIYEPWKAP+ Q++ C++
Sbjct: 608 SQFHRVYSPVSFPKKWDPEGNFVRRYVPELTAFDAKYIYEPWKAPVVDQKRWRCLV 663
>gi|408391364|gb|EKJ70743.1| hypothetical protein FPSE_09113 [Fusarium pseudograminearum CS3096]
Length = 637
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 120/281 (42%), Gaps = 79/281 (28%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGET AL L+E ++ + +F+ Q P T T S L FG LSVR FYW
Sbjct: 239 GGETLALKALDEIIADKKYTATFQKPKTSPAQFEPQAT---TLLSPHLHFGSLSVREFYW 295
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LP-- 264
+ D ++ P ++ GQL++R+ YF +A + Q NP C IPW LP
Sbjct: 296 RVKDVVDSYKGASSPPE-SLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSK 354
Query: 265 ----------ESHPNKEK---YLNAWKNGQTGYPFIDAVMRQLR---------------- 295
E H + E+ + W+ G TG+P+IDA+MRQL+
Sbjct: 355 RDPETGLVTGEYHVDSEEAEIWFKRWRAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACF 414
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L C+ C PV FG++ D
Sbjct: 415 LTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCSAFFSQYFRCYSPVAFGQKWDK 474
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
G I+RYVPEL+ +YIYEPWKAPL Q+KA + D
Sbjct: 475 KGELIRRYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGD 515
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 9 GYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
G NR++FLL+C DL + + + +LF+++ +P ++F KL + T + FE+D +
Sbjct: 50 GLNRWQFLLDCQNDLSKSITKVNPNSKLFVLREAPQTLFPKLFKAWEVTHIVFEKDTD 107
>gi|398412077|ref|XP_003857369.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
gi|339477254|gb|EGP92345.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
Length = 670
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 131/317 (41%), Gaps = 91/317 (28%)
Query: 138 PEMDFGDPLIRWLG----------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
P+ DF P + LG GET L +L L E +G + + SP
Sbjct: 217 PKGDFAVPSLEELGMPVATTQHRGGETIGLKQLEGILKDED---YTGTFEKPKTSPAAFE 273
Query: 188 PPTS--QSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF---NITGQLIWRE-YFYTM 241
P ++ S L FG LSVR FY + D + + P+ ++ GQL++R+ YF
Sbjct: 274 PQSTFLTSPYLHFGALSVRYFYHRVQDIIEKRKKSKQPTSSPPESLIGQLLFRDMYFGAQ 333
Query: 242 SAHNPYYDQMEKNPICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYP 285
++ + Q NP C IPW LP P +++ W NG TG+P
Sbjct: 334 ASLGWSFGQTYNNPHCRFIPWHLPSKVNTASRLITGEYEVDSPEADEWFKRWSNGTTGFP 393
Query: 286 FIDAVMRQLR-------------------------------------------------R 296
+IDA+MRQLR +
Sbjct: 394 WIDAIMRQLRQEGWIHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQ 453
Query: 297 LLDCTY-------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
L CT C PV FG++ D +G YI++YVPEL P +YIYEP KAP+ Q+KA
Sbjct: 454 WLSCTAFFAQFYRCYSPVAFGKKWDDEGAYIRKYVPELADMPKKYIYEPHKAPIVDQKKA 513
Query: 350 NCIISKDYPERIVNHVQ 366
+I D E+ + V+
Sbjct: 514 KVLIKGDGSEKEADGVK 530
>gi|389622363|ref|XP_003708835.1| cryptochrome-1, variant [Magnaporthe oryzae 70-15]
gi|351648364|gb|EHA56223.1| cryptochrome-1, variant [Magnaporthe oryzae 70-15]
Length = 528
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 122/288 (42%), Gaps = 90/288 (31%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGE+ AL +L+ + ++ + + Q SP P ++ S A+ FG LSVR FY
Sbjct: 89 GGESLALRELDAIIENQV---YTATFRKPQTSPAAFEPQSTTLLSPAMHFGSLSVRLFYH 145
Query: 209 ALHDHFNTIHEGR------PPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIP 261
+ D + ++ + PP ++TGQL++R+ YF +A P + Q N C IP
Sbjct: 146 RVQDTVDAYNQAKKKGASLPPE--SLTGQLLFRDMYFAAQAAIGPCFSQTAGNAHCRFIP 203
Query: 262 WLPESH--------------------PNKEKYLNAWKNGQTGYPFIDAVMRQLR------ 295
W SH E + W+ GQTG+P+IDA+MRQLR
Sbjct: 204 WHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPWIDALMRQLRVEGWIH 263
Query: 296 -------------------------------------------RLLDCTY-------CVC 305
+ L CT C
Sbjct: 264 HLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQWLSCTAFFSQYFRCYS 323
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
P++FG++ DPDG +I+++VPEL +YIYEPWKAP +A ++
Sbjct: 324 PISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAPEAELRRAGVVM 371
>gi|389622365|ref|XP_003708836.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|351648365|gb|EHA56224.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|440473506|gb|ELQ42297.1| cryptochrome-1 [Magnaporthe oryzae Y34]
gi|440489726|gb|ELQ69353.1| cryptochrome-1 [Magnaporthe oryzae P131]
Length = 679
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 122/288 (42%), Gaps = 90/288 (31%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGE+ AL +L+ + ++ + + Q SP P ++ S A+ FG LSVR FY
Sbjct: 240 GGESLALRELDAIIENQV---YTATFRKPQTSPAAFEPQSTTLLSPAMHFGSLSVRLFYH 296
Query: 209 ALHDHFNTIHEGR------PPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIP 261
+ D + ++ + PP ++TGQL++R+ YF +A P + Q N C IP
Sbjct: 297 RVQDTVDAYNQAKKKGASLPPE--SLTGQLLFRDMYFAAQAAIGPCFSQTAGNAHCRFIP 354
Query: 262 WLPESH--------------------PNKEKYLNAWKNGQTGYPFIDAVMRQLR------ 295
W SH E + W+ GQTG+P+IDA+MRQLR
Sbjct: 355 WHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPWIDALMRQLRVEGWIH 414
Query: 296 -------------------------------------------RLLDCTY-------CVC 305
+ L CT C
Sbjct: 415 HLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQWLSCTAFFSQYFRCYS 474
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
P++FG++ DPDG +I+++VPEL +YIYEPWKAP +A ++
Sbjct: 475 PISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAPEAELRRAGVVM 522
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 9 GYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
G NR+++LL+C DL + + +LF+++ +P S+F KL + T L FE+D +
Sbjct: 50 GLNRWQYLLDCQNDLSASITNLNPRSKLFVLREAPQSLFPKLFKAWKVTHLVFEKDTDA 108
>gi|452989588|gb|EME89343.1| hypothetical protein MYCFIDRAFT_201892 [Pseudocercospora fijiensis
CIRAD86]
Length = 655
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 112/475 (23%), Positives = 185/475 (38%), Gaps = 129/475 (27%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NRF+FL++C D+ + + + +LF+++ +++ KL + + L FE+D +
Sbjct: 49 VGANRFQFLIDCQNDVSKSITKLNKKSKLFVLREPAVTLLPKLFKAWKISHLVFEKDTDA 108
Query: 66 ------VKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPPRPKEDIDFRHVTFGTMS 115
K ++ + +TL + D+ G P + G +
Sbjct: 109 YARERDAKVTEAAKKAGVEVIIKNGRTLFDPDDIVKANGGKPTMSISQLQQAGAKIGDIE 168
Query: 116 ESLQREVSL----------FQTVPKPE----QFHKY------------PEMDFGDPLIRW 149
+ + SL QT P P + H+ P F P +
Sbjct: 169 QPIDAPKSLPDPGDMTLKIEQTKPDPNPDFNESHRESDDATFDSGIAGPSGKFDPPTLAE 228
Query: 150 LG----------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS--QSAALK 197
LG GE+ L L L+ E + + + SP P ++ S L
Sbjct: 229 LGMKAATSPHKGGESVVLHSLENILADED---YAATFQKPKTSPAAFEPQSTFLTSPYLH 285
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHF---NITGQLIWRE-YFYTMSAHNPYYDQMEK 253
FG LS R FY + + + + P+ ++ GQL++R+ YF ++ + Q
Sbjct: 286 FGALSCRYFYHRVAEIVERRKKEKKPTSSPPESLAGQLLFRDMYFAAQASLGWSFGQTYN 345
Query: 254 NPICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-- 295
N C +PW LP KE + W++G TG+P+IDA+MRQLR
Sbjct: 346 NSHCRFVPWHLPSKVDILSKRTTGAYEIDDEEKEIWFQRWRSGTTGFPWIDAIMRQLRAE 405
Query: 296 -----------------------------------------------RLLDCTY------ 302
+ L CT
Sbjct: 406 GWIHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFAQFY 465
Query: 303 -CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
C P+ FG++ DPDG ++++YVPEL+ FP ++IYEP KAP+ Q+KA +I D
Sbjct: 466 RCYSPIAFGKKWDPDGDFVRKYVPELKDFPKKFIYEPHKAPIADQKKAGVLIKGD 520
>gi|396460940|ref|XP_003835082.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
gi|312211632|emb|CBX91717.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
Length = 709
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 125/306 (40%), Gaps = 92/306 (30%)
Query: 138 PEMDFGDPLIRWLG----------GETEALIKLNERLSQE--IESFKSGVYLSNQVSPDL 185
P DF P ++ LG GET AL L + ++ E +F+ P
Sbjct: 262 PNGDFAVPTMKELGLKLATSTHRGGETLALEALEKIIANEEYTATFEKPKTAPTAFEPQA 321
Query: 186 TGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH--EGRPPSHFNITGQLIWRE-YFYTMS 242
T T S L FG LS R FYW + D + +PP+ ++TGQL++R+ YF +
Sbjct: 322 T---TLLSPHLHFGSLSCREFYWRVQDVVDRFKGKASQPPT--SLTGQLLFRDMYFGAQA 376
Query: 243 AHNPYYDQMEKNPICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYPF 286
A + Q NP C IPW LP E + WK G TG+P+
Sbjct: 377 ALGYSFSQTYNNPQCRFIPWHLPSKIDIKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPW 436
Query: 287 IDAVMRQLRR-------------------------------------------------L 297
IDA+MRQL+R
Sbjct: 437 IDALMRQLKREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQW 496
Query: 298 LDCTY-------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
L CT C P+ F ++ D +G ++KRYVPEL +F +YIYEPWKAP+ Q+K
Sbjct: 497 LSCTAFFAQFFRCYSPIAFPQKWDKEGEFVKRYVPELAKFDKKYIYEPWKAPIADQKKWG 556
Query: 351 CIISKD 356
C I D
Sbjct: 557 CRIEGD 562
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NR+++LL+C DL + + Q LF+++ +P ++F KL + T L FE+D +
Sbjct: 95 VGPNRWQYLLDCQKDLSKSITKVNPQSKLFVIREAPQTLFPKLFKAWQITHLVFEKDTDA 154
>gi|429854958|gb|ELA29939.1| DNA photolyase [Colletotrichum gloeosporioides Nara gc5]
Length = 445
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 141/341 (41%), Gaps = 91/341 (26%)
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE---QFHKYPEMDFGDPLIR 148
D PP+ K D + T G S ++ + P+ E+ F
Sbjct: 4 DFEPTPPKTKPDFNKEQRTEGD---------SAYKKISGPDGDFAIETMEELGFPSATTP 54
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRF 206
GGET+AL L E L + + + + SP P ++ S L FG LSVR F
Sbjct: 55 HRGGETKALAMLEEILKDKK---YTATFEKPKTSPAAFEPQSTTLLSPFLHFGALSVREF 111
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY-YDQMEKNPICLNIPW-LP 264
YW + + ++G N+ GQL++R+ ++ A Y + Q NP C IPW LP
Sbjct: 112 YWRAKEGIDK-YKGAAKIPENLLGQLLFRDMYFAAHAALGYKFTQTANNPYCRFIPWHLP 170
Query: 265 ------------ESHPNK---EKYLNAWKNGQTGYPFIDAVMRQLR-------------- 295
E H + +++ WK G TG+P+IDA+MRQ+R
Sbjct: 171 SKVDSNTGLITGEYHVDSKQADEWFRRWKYGLTGFPWIDALMRQMREEGWIHHLGRHSVA 230
Query: 296 -----------------------------------RLLDCTY-------CVCPVNFGRRL 313
+ L CT C PV+FG++
Sbjct: 231 CFLTRGGCYIDWERGCEVFEEWLIDHEPAANAGNWQWLSCTAFFSQYFRCYSPVSFGQKW 290
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
D G +++R+VPEL++ +YIYEPWKAPL Q+KA ++
Sbjct: 291 DKHGDFVRRWVPELKKLDAKYIYEPWKAPLPDQKKAGVRVT 331
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 170/448 (37%), Gaps = 114/448 (25%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R F++ L DLD L++ G +L I +G + + + + +E T + + +D
Sbjct: 47 GAARIAFMIAALRDLDANLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRD------ 100
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSG----------LPPRPKEDIDFRHVTFGT----- 113
Y F R + + RDL+ P D R T T
Sbjct: 101 YTPFA------RRRDAQVEAALRDLNVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRR 154
Query: 114 -MSESLQREVSLFQTV------PKPEQFHKYPEMDFGDPLIRWL-----GGETEALIKL- 160
+ + QR + + + P PE D D I GGET +L
Sbjct: 155 WRALTEQRRAEVLRAIEPPLLRPAPEAVADQTVPDHADLGIVVSQRIPPGGETHGAARLA 214
Query: 161 ---NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT 216
+ + I + G L L P TS+ S L+FGC++ R+ A +
Sbjct: 215 AFVDLAAAHSIAGYAEGRDL-------LAEPATSRLSPYLRFGCVAPRQALRAALRLLDI 267
Query: 217 IHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ + S G+L WR+++Y + H P+ + P + W N
Sbjct: 268 VGDDHRTVRSIETWIGELAWRDFYYQILWHYPHVVRRSFKPQYDALAW-----ENDPALF 322
Query: 275 NAWKNGQTGYPFIDAVMRQ----------------------------------LRRLLDC 300
+AWK G+TGYP IDA M Q +++L+D
Sbjct: 323 DAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVASFLTKDLLIDWRWGERYFMQQLVDG 382
Query: 301 TYCVC----------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ PV+ G++ DP G+Y++RY+PEL Q P +YI+ P
Sbjct: 383 DHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFDPKGLYVRRYLPELAQVPDRYIHAP 442
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQ 366
W P Q++ +I +DYP IV+H +
Sbjct: 443 WTMPRAEQQRCGVVIGRDYPAPIVDHAE 470
>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
Length = 684
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 153/375 (40%), Gaps = 96/375 (25%)
Query: 91 RDLSGLP------PRPKEDIDFRHVTFGTMSESLQREVSLFQTV-PKPEQFHKYPE---- 139
R L GLP E ID G + ++VS + TV + + P
Sbjct: 200 RSLEGLPYYTGKGREGPESIDLNSTELGGQRD---KKVSCYDTVQGEASELFSAPTLASL 256
Query: 140 -MDFGDPLIRWLGGETEALIKLNE--RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
MD GGE AL KL + ++ + +F Q + D + T S L
Sbjct: 257 GMDASKVKDTIKGGEPIALEKLANICKDAKYVATFAKPKTSPGQSAEDPS--TTLLSPYL 314
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGR---PPSHFNITGQLIWREYFYTMS-AHNPYYDQME 252
KFGCLSVR+ +W + N G PP N+ GQL++R+ + A + ++
Sbjct: 315 KFGCLSVRKLWWDAEEAKNRYKGGSKTGPPE--NLNGQLLFRDMYACAEYAIGDAFGRVR 372
Query: 253 KNPICLNIPWLPESHPNK---------------EKYLNAWKNGQTGYPFIDAVMRQLRR- 296
N +C + W +H ++ E L+A+K GQTG+P+IDA+MRQLR
Sbjct: 373 GNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWIDALMRQLRLE 432
Query: 297 ----------------------------------LLDCTYCVCPVN-------------- 308
L+D C P N
Sbjct: 433 GWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCSAFFTQYF 492
Query: 309 -------FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
F + D G +++Y PEL +FP +YIYEP+ AP VQ+KA CII KDYP +
Sbjct: 493 RLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGCIIGKDYPLPM 552
Query: 362 VNHVQASLENKQYLK 376
++ +A EN +K
Sbjct: 553 LDEKEAKAENMARMK 567
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
+G NRFRFLLE + L + + S QL +V+G P + +L + + T L FE+D
Sbjct: 50 VGVNRFRFLLESMIALSKNITSTQSNSQLLVVRGEPTELLPELWKRWSITHLVFEKD 106
>gi|443894766|dbj|GAC72113.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 685
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 131/303 (43%), Gaps = 81/303 (26%)
Query: 151 GGETEALIKLNE--RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE AL KL + + ++ + +F Q + D + T S LKFGCLSVR+ +W
Sbjct: 269 GGEPLALEKLAKICKDAEYVATFAKPKTSPGQSAEDPS--TTLLSPYLKFGCLSVRKLWW 326
Query: 209 ALHDHFNTIHEGR---PPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPWLP 264
+ G PP N+ GQL++R+ Y A + ++ N +C + W
Sbjct: 327 DAEEAKKKYKGGSKTGPPE--NLNGQLLFRDMYACAEHAIGDDFQRVRGNEVCRYMDWYL 384
Query: 265 ESHPNK---------------EKYLNAWKNGQTGYPFIDAVMRQLRR------------- 296
+H +K E L+A+K GQTG+P+IDA+MRQLR
Sbjct: 385 PTHYDKNGEVILPRPPGDAVSEARLSAFKLGQTGFPWIDALMRQLRLEGWMHHLGRHSVA 444
Query: 297 ----------------------LLDCTYCVCPVN---------------------FGRRL 313
L+D C P N F +
Sbjct: 445 AFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCSAFFTQYFRLYGLATFPAKY 504
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
D G +++Y PEL +FP +YIYEP+ AP VQ+KA CII KDYP +++ + EN Q
Sbjct: 505 DKTGALVRKYCPELAKFPDKYIYEPFNAPKDVQQKAGCIIGKDYPFPMLDEKETKGENMQ 564
Query: 374 YLK 376
+K
Sbjct: 565 RMK 567
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 7 HIGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NRFRFLLE + L ++ + QL +V+G P + +L + + T L E+D
Sbjct: 49 RVGVNRFRFLLESMNALSERITATQSNSQLLVVRGEPTELLPELWKRWDITHLVIEKD-- 106
Query: 65 GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSES-LQREVS 123
P R K+ + + G E++ R+ TM+ S LQ+ VS
Sbjct: 107 ---PSAYGRRRDTLIREAAKKSKIEVVAVQGHHLFDPEEVAKRNKGKPTMAMSTLQKIVS 163
Query: 124 LFQTVPKP 131
VPKP
Sbjct: 164 DMGDVPKP 171
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 169/435 (38%), Gaps = 88/435 (20%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ + G R FL L LD L+ GG+L + G P ++ +L E + E+D
Sbjct: 43 SSYAGERRKAFLFSGLRVLDADLRRRGGRLIVRCGDPAAVLSRLAAESGACAVYAERD-- 100
Query: 65 GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR--EV 122
PY R P +L P +D + F S + V
Sbjct: 101 -YSPYARC-RDEAVARALPIPLVLTDGLTIRRPDALLKDDGTPYTVFTPYSRRWRSYPPV 158
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIR----------WLGGETEALIKLNERLSQEIESFK 172
+ +P P + PE G+P+ + + GE EA RL + +
Sbjct: 159 GAHEILPAPARL-AVPESIVGEPIPKQPHLDDDTGPFPSGEAEA----QARLRRFTTGDE 213
Query: 173 SGVYLSNQVS--PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI--HEGRPPSHFNI 228
+ +Y Q PDL + S L+FG LS R+ A + + E R + +
Sbjct: 214 APIYAYAQARDFPDLDST-SKLSPYLRFGMLSARQAALAAYQAMDAAANAEQRTGAETWL 272
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
T +LIWR+++Y++ H P+ + C + N + AW G TGYPFID
Sbjct: 273 T-ELIWRDFYYSILYHFPHVARG-----CFQRAYDAIIWENNPTHFAAWCAGLTGYPFID 326
Query: 289 AVMRQL----------------------------------RRLLDCTYCVC--------- 305
A MRQL +RLLD
Sbjct: 327 AAMRQLAATGWMHNRARMAVASFLVKDLLIDWRWGEKWFMQRLLDGDLAANNGGWQWSAG 386
Query: 306 -------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P G++ DP G+YI+R+VPELR P +YI+EPW+ P Q +A CI
Sbjct: 387 VGTDAAPYFRIFNPTAQGQKFDPRGVYIRRWVPELRLVPDRYIHEPWRMPRSEQMRAGCI 446
Query: 353 ISKDYPERIVNHVQA 367
I ++YP IV+H A
Sbjct: 447 IGQNYPAPIVDHAVA 461
>gi|302745158|gb|ADL62682.1| cryptochrome 2b, partial [Phreatichthys andruzzii]
Length = 180
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 87/182 (47%), Gaps = 61/182 (33%)
Query: 252 EKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------- 296
E NPIC+ IPW + +P L W +TG+P+IDA+M QLR+
Sbjct: 1 EGNPICIRIPW--DRNPEA---LAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCF 55
Query: 297 --------------------LLDCTY---------------------CVCPVNFGRRLDP 315
LLD + C CPV FGRR+DP
Sbjct: 56 LTRGDLWINWEEGMKIFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRIDP 115
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
+G +I+ Y+P LR FP ++IY+PW AP VQ A C+I DYP+ +VNH +AS N + +
Sbjct: 116 NGDFIRCYLPVLRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEASRLNIERM 175
Query: 376 KK 377
++
Sbjct: 176 RQ 177
>gi|302745162|gb|ADL62684.1| cryptochrome 4, partial [Phreatichthys andruzzii]
Length = 274
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 104/235 (44%), Gaps = 74/235 (31%)
Query: 147 IRWLGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
+ W GGET AL +L++ + + SF + N + P TG S L GCLSVR
Sbjct: 53 VLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTG----LSPYLSLGCLSVR 108
Query: 205 RFYWALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
FY L + + + PP ++ GQ++WRE+FYT+++ P + +ME NPICL I W
Sbjct: 109 TFYHQLSSVYAQSKNHSLPP--LSLQGQVLWREFFYTVASSTPNFTKMEGNPICLQIQWY 166
Query: 264 --PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------- 296
PE+ L W+ QTG+P+IDA+M QLR+
Sbjct: 167 HDPEA-------LEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISW 219
Query: 297 ----------LLDCTYCV---------------------CPVNFGRRLDPDGIYI 320
LLD Y + CPV FGRR DP G Y+
Sbjct: 220 EEGMKVFEELLLDADYSINAGNWMWLSASAFFHKYTRIFCPVRFGRRTDPQGQYL 274
>gi|343429136|emb|CBQ72710.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 684
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 127/302 (42%), Gaps = 79/302 (26%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS-QSAALKFGCLSVRRFYWA 209
GGE AL KL ++ ++ E + P T+ S LKFGCLSVR+F+W
Sbjct: 269 GGEPLALEKL-AKICKDAEYVATFAKPKTSPGDSAEDPSTTLMSPYLKFGCLSVRKFWWD 327
Query: 210 LHDHFNTIHEGR---PPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPWL-- 263
+ + G PP N+ GQL++R+ Y A + ++ N +C + W
Sbjct: 328 VEEAKKKYKGGSKTGPPE--NLNGQLLFRDMYACAEHAIGDDFQRVRGNEVCRYMDWYLP 385
Query: 264 -------------PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------- 296
P E L+A+K GQTG+P+IDA+MRQLR
Sbjct: 386 TQYDKNGEVIVPRPAGDAVSEARLSAYKLGQTGFPWIDALMRQLRLEGWMHHLGRHSVAA 445
Query: 297 ---------------------LLDCTYCVCPVN---------------------FGRRLD 314
L+D C P N F + D
Sbjct: 446 FLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCSAFFTQYFRLYGLATFPAKYD 505
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQY 374
G +++Y PEL +FP +YIYEP+ AP VQ++A CII KDYP +++ + +N Q
Sbjct: 506 KTGALVRKYFPELAKFPDKYIYEPFNAPKDVQQQAGCIIGKDYPFPMLDEKETKGDNMQR 565
Query: 375 LK 376
+K
Sbjct: 566 MK 567
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 7 HIGYNRFRFLLECLADLDRQLKS--HGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
+G NRFRFLLE + L + + S QL +V+G P + +L + N T L E+D
Sbjct: 49 RVGINRFRFLLESMTALSKNITSTQSKSQLLVVRGEPTELLPELWKRWNITHLVIEKD 106
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 117/442 (26%), Positives = 186/442 (42%), Gaps = 110/442 (24%)
Query: 11 NRFRFLLECLADLDRQL--KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---CEG 65
N +RFLLE L DLD +L K + +L ++ G P I +L ++ N K+ F+ E
Sbjct: 71 NVWRFLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSES 130
Query: 66 VK------------PYQSFPTGSHPPRYQPCKTL-LN----------FRDLSGLPPRPKE 102
+K Q+ SH Y P + LN FR L L +P
Sbjct: 131 MKHDGIIKILSEQQNVQAVSYFSHT-LYDPANVIALNNGRVPLSYKEFRRLMPLMGKPAS 189
Query: 103 DIDFRHVTFGTMSESLQREVSLFQTVPKPE-QFHKYPEMDFGDPLI----RWLGGETEAL 157
I H MS ++ S + VP+PE + K ++ D W+GGETEAL
Sbjct: 190 PIPEPH----PMSLCMKAPPS--ELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEAL 243
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L+ S+ V+ +S D P +KFGCLSVR+ + L +T
Sbjct: 244 SRLSSFCSRRAAIPNEPVHW--LMSKDTLSP------YIKFGCLSVRQLFSQLLQFASTS 295
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+G+ +T L+ RE+ + + + +P +D ME N +C+ +PW + ++ A+
Sbjct: 296 SKGQELFEL-LTKNLLLREFAFLVGSSSPKFDVMEGNSLCIQLPW-----ESNNVFIQAF 349
Query: 278 KNGQT--------------------------------GYPFIDAVMRQ---LRRLLD--- 299
+NGQT GY +I V+ + ++D
Sbjct: 350 RNGQTGYPWIDAIIRQIRQDGWAHFLARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFEL 409
Query: 300 -----------CTYCVC-------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C+ C P G+++D DG YIK YVPEL+ FP +Y+++PWK
Sbjct: 410 PVSSVCWMQSSCSGFFCTQIESYDPCLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKC 469
Query: 342 PLGVQEKANCIISKDYPERIVN 363
E + + YP+ I++
Sbjct: 470 SSLHTEASWLCDREQYPKPIID 491
>gi|380479795|emb|CCF42805.1| DNA photolyase [Colletotrichum higginsianum]
Length = 461
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 101/238 (42%), Gaps = 73/238 (30%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKN 254
L FG LSVR FYW + +G ++TGQL++R+ YF +A + Q N
Sbjct: 132 LHFGALSVREFYWRVQGVVARYGKGASKVPESLTGQLLFRDMYFAAHAALGHRFTQTANN 191
Query: 255 PICLNIPW-LP------------ESHPNKEK---YLNAWKNGQTGYPFIDAVMRQLR--- 295
P C IPW LP E H + E+ + WK G TG+P+IDA+MRQLR
Sbjct: 192 PYCRFIPWHLPSKVDAETGLVTGEYHVDSEQADEWFRRWKYGMTGFPWIDALMRQLREEG 251
Query: 296 ----------------------------------------------RLLDCTY------- 302
+ L CT
Sbjct: 252 WIHHLGRHAVACFLTRGGCYVDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQYFR 311
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER 360
C PV FG++ D G +++R+VPEL +YIYEPWKAPL Q+KA ++ ER
Sbjct: 312 CYSPVAFGQKWDRQGAFVRRWVPELANLDAKYIYEPWKAPLPDQKKAGVRVTGRGGER 369
>gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella]
Length = 166
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 185 LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAH 244
L PT S L+FGCLS R FY+ L D + + P ++ GQL+WRE+FYT + +
Sbjct: 12 LLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATN 70
Query: 245 NPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
NP +D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 71 NPRFDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQ 117
>gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin]
Length = 244
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 75/157 (47%), Gaps = 56/157 (35%)
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W G+TG+P+IDA+M QLR+ LLD
Sbjct: 1 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60
Query: 302 Y---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ C CPV FGRR DP G Y+KRY+P+L+ FP +YIYEPW
Sbjct: 61 FSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWN 120
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 121 APESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 157
>gi|345570555|gb|EGX53376.1| hypothetical protein AOL_s00006g242 [Arthrobotrys oligospora ATCC
24927]
Length = 637
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 118/490 (24%), Positives = 186/490 (37%), Gaps = 145/490 (29%)
Query: 8 IGYNRFRFLLEC---LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
+G NR++FLL+C ++D QL S +L +++ SP++I KL + N + L FE+ D
Sbjct: 48 VGPNRWQFLLDCQSAVSDGLSQLNSKS-RLLVLRESPLTILPKLFKAWNISHLVFEKDTD 106
Query: 63 CEGVKPYQSFPTGSHPPRYQPC----KTLLNFRDLSGLPPRPK----------------- 101
K + Q +TL + D+ G+ P
Sbjct: 107 SYARKRDDEVLAKAKEAGVQCIVKYGRTLWDSDDIVGINGGPTMTTMQLQKAGQKIGPPP 166
Query: 102 ------------EDIDFRHVTFGTMS-ESLQREVSLFQTVPKPEQFH---KYPEMDFGDP 145
D+ HVT + + + + +H + P+ DF P
Sbjct: 167 RPIPAPISIPPPGDLSLEHVTQDKPGPQYFNADQNQSNRSSEDSTYHAGLRGPKGDFSVP 226
Query: 146 LIRWLGGETEALIKLNERLSQEI--ESFKSGVYLSNQVSPDLTGPPTSQSAA-------L 196
+ L + E+++ E+ K Y + P+ T P Q A+ +
Sbjct: 227 TMEELKMTATTPHRGGEKIALEVLENVIKDKEYTATFSKPE-TAPTAFQPASTCLLSPHM 285
Query: 197 KFGCLSVRRFYWALHDHFNTIHE--------GRPPSHFNITGQLIWRE-YFYTMSAHNPY 247
FG +S R+FYW D + E PP ++TGQL +R+ YF +
Sbjct: 286 HFGSISCRKFYW---DVLEVVEEWEKSGKKATEPPC--SLTGQLFFRDMYFAAQAGIGTC 340
Query: 248 YDQMEKNPICLNIPW-LPESH-PN--------------------KEKYLNAWKNGQTGYP 285
+ Q N IPW LP H PN E++ W+ G+TG+P
Sbjct: 341 FGQTLHNSKVRYIPWNLPSKHQPNPDDPKKSLSIKGTYHVDSEEAEEWFIRWREGRTGFP 400
Query: 286 FIDAVMRQLR-------------------------------------------------R 296
+IDA+M QL+ +
Sbjct: 401 WIDAIMIQLKTEGWIHHLARHAVACFLTRGGCYIDWERGAEVFEEWLLDHEISCNAGNWQ 460
Query: 297 LLDCTY-------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
L CT P+ F ++ D +G Y++ Y+P+L+ FP +YIYEPWK P+ Q A
Sbjct: 461 WLSCTAFFSQYMRIYSPIAFPQKTDKEGNYVRHYIPQLKNFPEKYIYEPWKCPIPDQRAA 520
Query: 350 NCIISKDYPE 359
CII KDYP+
Sbjct: 521 GCIIGKDYPK 530
>gi|389748358|gb|EIM89535.1| DNA photolyase [Stereum hirsutum FP-91666 SS1]
Length = 629
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 117/279 (41%), Gaps = 81/279 (29%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE+ AL L LS + I +F+ P T T S L FG LSVR+F++
Sbjct: 221 GGESLALKNLQTLLSDKTYIATFEKPKTAPTAFEPAAT---TILSPHLHFGSLSVRKFHF 277
Query: 209 ALHDHFNTIHEGR----PPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW- 262
+ E R PP+ N+ GQL +RE YF A + Q+ N + IPW
Sbjct: 278 EVQRIIAEYSESRKASTPPA--NLPGQLYFREMYFCAQYAIGHPFSQIAGNSVARYIPWH 335
Query: 263 LPES------------HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------- 296
LP + P ++ W G TG+PF+DA+MRQLR+
Sbjct: 336 LPSTIPYSPTTPYTIDSPLAHRWFFRWAWGITGFPFVDALMRQLRQEGWIHHLGRHMVAC 395
Query: 297 -----------------------------------LLDCTY-------CVCPVNFGRRLD 314
L CT C PV FG++ D
Sbjct: 396 FLTRGGAYISWERGAEIFEELLIDHEPASNAGNWMWLSCTAFFSQYYRCYSPVAFGKKWD 455
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
P GI+++RY+PEL+ FP +++YEP AP Q KA C++
Sbjct: 456 PQGIFVRRYIPELKDFPDKWVYEPHLAPESGQRKAGCLV 494
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLK--SHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+G NR++FLL+C DL + LK + +L +++ +P ++ +L R+ T L FE+D +
Sbjct: 49 VGPNRWQFLLDCQNDLSQTLKRLNTKQRLLVLREAPQTLLPRLCRDWKITHLVFEEDTD 107
>gi|425767796|gb|EKV06352.1| DNA photolyase, putative [Penicillium digitatum Pd1]
gi|425769478|gb|EKV07970.1| DNA photolyase, putative [Penicillium digitatum PHI26]
Length = 604
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 118/282 (41%), Gaps = 81/282 (28%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE EAL L E + E I F+ P T T S L FG LSVR+F+W
Sbjct: 251 GGEQEALRILGECIKNEDYIGRFEKPNTSPADFEPQST---TLLSPHLHFGSLSVRKFWW 307
Query: 209 ALHDHFNTIHEGRPPSHF---NITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPWLP 264
+ N + + P N+ GQL++R+ YF + + + N I I W
Sbjct: 308 DVEGVLNKHRKAKKPVSTVPTNLPGQLLFRDMYFAAQAPLGHAFSRTYGNEIARFIDWHL 367
Query: 265 ESHP----------------NKEKYLNAWKNGQTGYPFIDAVMRQLRR------------ 296
+++P E++ WK+G+TG+P+IDA+MRQLR+
Sbjct: 368 QTNPPSQDGSIEGSYEVDSQEAEEWFQRWKDGRTGFPWIDALMRQLRQEGWIHHLGRHSV 427
Query: 297 -------------------------------------LLDCTY-------CVCPVNFGRR 312
L CT C P+ FG++
Sbjct: 428 ACFLTRGGCYVSWERGAAVFEELLIDHEVACNVGNWMWLSCTAFFAQFYRCYSPIAFGKK 487
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
DP+G I++Y PEL +F ++IYEPWKAP+ Q++ C I+
Sbjct: 488 WDPEGSLIRKYCPELAKFDKKHIYEPWKAPIADQKRWGCRIT 529
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 127/507 (25%), Positives = 203/507 (40%), Gaps = 127/507 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR-----ELNFTKL 57
P G RF+FLLECL D+D L+ +L + G IS L + +L F K
Sbjct: 112 PENKKCGAVRFQFLLECLEDIDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEKF 171
Query: 58 ----CFEQDCEGVKPYQSF----PTGSHPPRYQPCKTLL-----------NFRDLSGLPP 98
++D + + Q+ T S + P + + NF D+ P
Sbjct: 172 QLPYAIKRDEKIMSMAQTLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMP 231
Query: 99 RPKEDI-------DFRHV-TFGTMSESLQRE-------------VSLFQTVPKPEQFHKY 137
+P+ + F V + T+ E Q E + + + K
Sbjct: 232 QPRLPLLTPSQLPSFESVISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTI 291
Query: 138 PEMDFGDPLI-----RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP--T 190
P +D L GGE+ AL +L S E + G + + SP PP T
Sbjct: 292 PALDVFGYLTPSQHSFLYGGESVALERLEVFCSIEE---RVGCFEKPKTSPVQMNPPSTT 348
Query: 191 SQSAALKFGCLSVRRFYWAL---HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
+ S L FGCLSVR ++ + +F+++ +G P + ++ GQL+WRE+FY + + P
Sbjct: 349 ALSPYLAFGCLSVRALFYRIMFIQLNFSSVSKGSPAT--SLDGQLMWREFFYCYAHNVPE 406
Query: 248 YDQMEKNPICLNIPW---------LPESHPNKEKYLNA------WKNGQTGYPFIDAVMR 292
+ E+NP+C I W L +KE+ L A W G+TG+P+IDA+MR
Sbjct: 407 FASPEQNPLCRKIGWRLQNEDSDPLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMR 466
Query: 293 QL----------RRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
Q+ R + C F R D +YI ++ + F I W
Sbjct: 467 QILTEGWAHHLARHAVAC--------FLTRGD---LYIS-WIHGAKLFQELLIDMDWAIN 514
Query: 343 LG--VQEKANCIIS--------KDYPERIVNHVQASLENKQYLK---------------- 376
+G + A+C +P++ N +A++ K Y+
Sbjct: 515 VGNWLWVSASCFFHDFQNVFSPSTFPQQYYNEQEAAIYIKHYIPELQNMPDRYVFEPWRA 574
Query: 377 ----KEKANCIINKDYPERIVNHVQAS 399
++ NC+I KDYP I++H AS
Sbjct: 575 PLNIQKSVNCLIGKDYPFPILDHHVAS 601
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
IYIK Y+PEL+ P +Y++EPW+APL +Q+ NC+I KDYP I++H AS + LK
Sbjct: 550 AIYIKHYIPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVASKKCILALK 609
Query: 377 K--EKAN 381
+ E AN
Sbjct: 610 RCSEAAN 616
>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
Length = 499
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 174/430 (40%), Gaps = 85/430 (19%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L LA+LD L+++GG L ++ G P + KL EL + D E V +
Sbjct: 71 RIDFILASLAELDDALRANGGGLVVLYGDPAELVPKLAAELRVDAVFANHDYEPVAIERD 130
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDI----DFRHVTFGTMSESLQREVSLFQT 127
G + + L F+D + ++++ D F + +++S F
Sbjct: 131 ATVGERLA--EKGRQWLTFKDQTIF---ERDELLNGQDKPFAVFTPYKNAWLKQLSAFDL 185
Query: 128 VPKP-EQFHKY-----PEMDFGDPLIRWLGGETEALIKL-----NERLSQEIESFKSGV- 175
P P E + K+ P++D P + L L L Q ++ F + +
Sbjct: 186 KPYPVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLTRID 245
Query: 176 -YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y + P G P+ S L+FG +S+R L + +G+ + + +LIW
Sbjct: 246 SYAERRDFPAAKG-PSYLSVHLRFGTVSIRTLA-RLAYEMSLQPDGKGAATW--LSELIW 301
Query: 235 REYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
R++++ + AH+P + P ++ W E P+ + AW +G+TGYP +DA M Q
Sbjct: 302 RDFYFMVLAHHPRIAKGAPFKPEYEHLRW--EKGPSADAAFAAWCDGRTGYPLVDAAMLQ 359
Query: 294 LR---------RLLDCTYCVCPVNFGRRL------------------------------- 313
L R++ ++ + RL
Sbjct: 360 LNHTGYMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDA 419
Query: 314 ----------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
DPDG +IKRY+P+L Q P ++I+ PW A + ++ +Y
Sbjct: 420 QPYFRIFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAPWLAGAERLAEYGVVLGGNY 479
Query: 358 PERIVNHVQA 367
PE IV+H QA
Sbjct: 480 PEPIVDHAQA 489
>gi|13543860|gb|AAH06077.1| Cry2 protein, partial [Mus musculus]
Length = 243
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 73/154 (47%), Gaps = 56/154 (36%)
Query: 280 GQTGYPFIDAVMRQLRR-----------------------------------LLDCTY-- 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 2 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 61
Query: 303 -------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
C CPV FGRR DP G YI+RY+P+L+ FP +YIYEPW AP
Sbjct: 62 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 121
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 122 SVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 155
>gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides]
Length = 247
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GGETE L +LN +++ K + SP+ P T+ S + GCLS + FY
Sbjct: 60 GGETEGLRRLNMYMARREWVCK---FEKPNSSPNSLEPSTTVLSPYISHGCLSAKLFYHK 116
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
L + N++ PP ++ GQL+WRE++YT A +D+M N +C IPW
Sbjct: 117 LKEVLNSMRHTEPP--VSLLGQLMWREFYYTAGAGTENFDKMVGNSVCTQIPW-----GK 169
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRR 296
E++L AW G+TGYPF+DA+MRQL++
Sbjct: 170 NEEHLIAWAEGRTGYPFVDAIMRQLKQ 196
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 159/415 (38%), Gaps = 98/415 (23%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G +R FL E L DL L+ GG L + QG P++ +L REL + D +
Sbjct: 42 GGHRAGFLAESLDDLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVSALAQ 101
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSG---LPP---RPKEDIDFRHV---TFGTMSESLQ 119
+ R++ + FR G +PP RP D V + S +
Sbjct: 102 RRERRLAEECERHR-----MEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRR 156
Query: 120 REV-SLFQTVPKPEQFHKYPEMDFG-DPLIRWLGGETEALIKLNERLSQEIESFKSGVYL 177
REV V PE P G +P + GGET A ++ + L +E + G
Sbjct: 157 REVLGAPAKVRIPEGLEAGPLPVAGHEPHGLFRGGETVARERMRQWLKYCVEDYADG--- 213
Query: 178 SNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE 236
DL G TS+ S L+FGCLS E + + QL WR+
Sbjct: 214 ----HDDLAGNRTSKLSPYLRFGCLSPLEL------------ESLSENGDDFVRQLCWRD 257
Query: 237 YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL-- 294
+F+ ++ P ++ + P + + E AWK G+TG P +DA MRQL
Sbjct: 258 FFHQVTRAFPRINRDDYRPQG-------QEWRDDEDAAQAWKEGRTGVPIVDAGMRQLLA 310
Query: 295 -------RRLLDCTYCV------------------------------------------- 304
R++ ++ V
Sbjct: 311 EGWMHNRARMVTSSFLVRRLRVDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRPN 370
Query: 305 ---CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV RR DP+G YI+RY+PEL P++ IYEPW+ G++ ++S D
Sbjct: 371 RIVNPVRQARRFDPEGEYIRRYLPELDAVPVKMIYEPWRMSTGIRGYPAPLVSMD 425
>gi|392349314|ref|XP_003750352.1| PREDICTED: cryptochrome-1-like, partial [Rattus norvegicus]
Length = 281
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%)
Query: 302 YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
+C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP G+Q+ A C+I +YP+ +
Sbjct: 162 HCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPM 221
Query: 362 VNHVQASLENKQYLKK 377
VNH +AS N + +K+
Sbjct: 222 VNHAEASRLNIERMKQ 237
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 148/322 (45%), Gaps = 55/322 (17%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT G R RFLLE +ADL + L+ HG +L + G P+ I +L E + +++ ++
Sbjct: 57 GTRKTGDFRTRFLLEAVADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREV 116
Query: 64 EGVKPYQSFPTGSHPPRYQPC--KTLLNFRDLSGLPPRPKEDIDF--RHV--TFGTMSES 117
+F + + K LN + G KED+ F + + F T +
Sbjct: 117 -------AFEETDISAKVEAVLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKK 169
Query: 118 LQREVSL---FQT--------VPKPEQFHKYPEMDFGDP------LIRWLGGETEALIKL 160
++R+ S+ F+T + P + ++ F +P ++ + GGETEAL +L
Sbjct: 170 VERDSSIRPCFETPGNISIPPIDHPGEIPTLQQLGFDEPVDDSRAVLHFKGGETEALKRL 229
Query: 161 NERL--SQEIESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
+E S ++++K+ G S++ SP L GCLSVR+ YW +
Sbjct: 230 HEYFWESDCLKTYKTTRNGLLGADYSSKFSP-----------WLSVGCLSVRQVYWEVKR 278
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+ G S + + +L+WR+YF M Y +Q K PE P++++
Sbjct: 279 Y--EQERGANDSTYWLIFELLWRDYFRFM--FKKYGNQFFKAGGFKGQA--PEVVPHEDE 332
Query: 273 YLNAWKNGQTGYPFIDAVMRQL 294
WK G+TG PFIDA MR+L
Sbjct: 333 LFEKWKAGETGVPFIDANMREL 354
>gi|349602989|gb|AEP98959.1| Cryptochrome-1-like protein, partial [Equus caballus]
Length = 199
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%)
Query: 302 YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
+C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP G+Q+ A C+I +YP+ +
Sbjct: 23 HCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPM 82
Query: 362 VNHVQASLENKQYLKK 377
VNH +AS N + +K+
Sbjct: 83 VNHAEASRLNIERMKQ 98
>gi|346975848|gb|EGY19300.1| cryptochrome-1 [Verticillium dahliae VdLs.17]
Length = 652
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 114/268 (42%), Gaps = 80/268 (29%)
Query: 151 GGETEALIKLNERLSQEIESFK-SGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFY 207
GGE+ AL E L + ++ K + + Q SP P ++ S + FG LSVR FY
Sbjct: 241 GGESRAL----ETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFY 296
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LP- 264
W D +G ++TGQL++R+ YF +A ++Q N C IPW LP
Sbjct: 297 WQAVDAVKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQTRGNAYCRFIPWHLPS 356
Query: 265 -----------ESHPNKEK---YLNAWKNGQTGYPFIDAVMRQL----------RRLLDC 300
E H + E+ + WK GQTG+P+IDA+MRQL R + C
Sbjct: 357 KVNTETGLITGEYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVAC 416
Query: 301 ----------------------------------TYCVCPVNF------------GRRLD 314
+ C F G++ D
Sbjct: 417 FLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCAAFFSQYFRCYSPVSFGQKWD 476
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAP 342
+G++++R+VPEL+ +YIYEPWKAP
Sbjct: 477 KEGLFVRRWVPELKDLDAKYIYEPWKAP 504
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 55/80 (68%)
Query: 301 TYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER 360
T CPV FGRR DP G Y+++Y+P L+ FP QYIYEPWKAP VQ A CII KDYP
Sbjct: 267 TRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRP 326
Query: 361 IVNHVQASLENKQYLKKEKA 380
IV+H++AS N +++ +
Sbjct: 327 IVSHIEASQRNLALMRQVRT 346
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 102/254 (40%), Gaps = 56/254 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G MH+G R+RFLL+ L DLD +L++ G +LF++ GS +I ++L + T++ ++ +
Sbjct: 44 GAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEV 103
Query: 64 E-----------------GVKPYQSF------------PTGSHPPRYQPCKTLLNFRDLS 94
E G++ Y G PP K L+ +
Sbjct: 104 EPYYTRMDKDIQTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPP--LTYKKFLHVLSVL 161
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQR-----EVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
G P +P D+ E QR +V VP E + + W
Sbjct: 162 GEPEKPARDVSI---------EDFQRCVTPVDVDRVYAVPSLAHLGLQVEAE-----VLW 207
Query: 150 LGGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
GGE+ AL +L + + + +F + N + P TG S L GCLSVR FY
Sbjct: 208 PGGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTG----LSPYLSLGCLSVRTFY 263
Query: 208 WALHDHFNTIHEGR 221
F + GR
Sbjct: 264 HKYTRIFCPVRFGR 277
>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
Length = 613
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 119/287 (41%), Gaps = 84/287 (29%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGET AL L + Q+ E G + + SP P + S L FG LSVR+F+W
Sbjct: 246 GGETAALRVLAGYI-QDGEYV--GTFEKPKTSPAAFEPQATTLLSPHLHFGSLSVRKFWW 302
Query: 209 ALHDHFNTIHEGRPPSH---FNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-L 263
+ + + + N+ GQL++R+ YF +A + Q N I W L
Sbjct: 303 DVQGVLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRFIDWHL 362
Query: 264 PESH------------------PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------- 295
P ++ E + WK G+TG+P+IDA+MRQL+
Sbjct: 363 PTNYITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWIHHLGR 422
Query: 296 ---------------------------------------RLLDCT-------YCVCPVNF 309
+ L CT +C P+ F
Sbjct: 423 HSVACFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQWLSCTAFYSQYYHCYSPIAF 482
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
G++ DP+G +++RY PEL F +YIYEPWKAPL Q+K C ++ D
Sbjct: 483 GKKWDPEGEFVRRYCPELANFDKKYIYEPWKAPLPDQKKWGCRVTGD 529
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+G NR++FLLEC +DL + +L++V+ +P S+ KL ++ T L FEQD +
Sbjct: 48 VGPNRWKFLLECQSDLSAAYTTLNPKQRLWVVREAPQSVLPKLWKKWQITHLVFEQDTDA 107
>gi|453088843|gb|EMF16883.1| FAD_binding_7-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 637
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 126/307 (41%), Gaps = 91/307 (29%)
Query: 138 PEMDFGDPLIRWLG----------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
P+ DF P + LG GET L L E++ Q+ E + + + SP
Sbjct: 217 PKGDFSPPTLEELGMAPATSPHKGGETVILEAL-EKILQDEEY--TSTFEKPKTSPAAFE 273
Query: 188 PPTS--QSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF---NITGQLIWREYFYTMS 242
P ++ S L FG LS R FY + + + + P+ ++TGQL++R+ ++
Sbjct: 274 PQSTFLTSPYLHFGALSCRYFYHRVAEIVEKRKKEKKPTSAPPESLTGQLLFRDMYFAAQ 333
Query: 243 AHNPY-YDQMEKNPICLNIPW-LPE---------------SHPNKEKYLNAWKNGQTGYP 285
AH + Y Q N C IPW LP KE++ W G TG+P
Sbjct: 334 AHGGWQYGQTLGNAHCRFIPWHLPSKVDMDTKRITAEHEIDDEEKEEWFQRWSQGTTGFP 393
Query: 286 FIDAVMRQLR-------------------------------------------------R 296
+IDA MR LR +
Sbjct: 394 WIDAHMRALRSTGWIHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQ 453
Query: 297 LLDCTY-------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
L CT C P+ FG++ D +G+YI+R++PEL+ P +YIYEP KAP+ Q+KA
Sbjct: 454 WLSCTAFFSQFFRCYSPIAFGKKWDANGLYIRRWIPELKDLPNKYIYEPHKAPVQDQKKA 513
Query: 350 NCIISKD 356
+ D
Sbjct: 514 GVRVDGD 520
>gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus]
Length = 164
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 61/162 (37%)
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
++ GQL+WRE+FYT + NP +D+ME NPIC+ IPW + +P L W +TG+P
Sbjct: 7 LSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPW--DKNPEA---LAKWAEAKTGFP 61
Query: 286 FIDAVMRQLRR-----------------------------------LLDCTY-------- 302
+IDA+M QLR+ LLD +
Sbjct: 62 WIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWM 121
Query: 303 -------------CVCPVNFGRRLDPDGIYIKRYVPELRQFP 331
C CPV FGRR DP+G +I+RY+P LR FP
Sbjct: 122 WLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFP 163
>gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei]
Length = 155
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 57/76 (75%)
Query: 302 YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
+C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP GVQ+ A C+I +YP+ +
Sbjct: 44 HCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPM 103
Query: 362 VNHVQASLENKQYLKK 377
VNH +AS N + +K+
Sbjct: 104 VNHAEASRLNIERMKQ 119
>gi|361124167|gb|EHK96280.1| putative Cryptochrome-2 [Glarea lozoyensis 74030]
Length = 586
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 120/297 (40%), Gaps = 79/297 (26%)
Query: 151 GGETEALIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
GGE+ AL L++ ++ + +F+ P T T S L FG LS+R FYW
Sbjct: 188 GGESLALKALSKIIADKKYTATFEKPKTAPTDFEPQAT---TLLSPHLHFGSLSIREFYW 244
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-LP-- 264
+ D + ++ GQL +R+ YF +A YY Q NP C IP+ LP
Sbjct: 245 QVQDTIASYKGKSSEPPVSLLGQLYFRDMYFGAQAAGGWYYAQTINNPHCRFIPFSLPAK 304
Query: 265 -------------ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------------- 295
+ E++ WK G TG+P+IDA+MRQLR
Sbjct: 305 IDPDTKLITGEFQSTDSQAEEWFVRWKYGLTGFPWIDALMRQLRLEGWIHHLGRHAVACF 364
Query: 296 ---------------------------------RLLDCTY-------CVCPVNFGRRLDP 315
+ L CT P+ FG++ DP
Sbjct: 365 LTRGGCFIHWERGAEVFEEWLIDHEVASNVGNWQWLSCTAFYSMYYRMYSPIAFGQKWDP 424
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANC-IISKDYPERIVNHVQASLEN 371
+G +++ +VPEL+ +YIYEPWKAP +KA ++ D VN + L N
Sbjct: 425 EGKFVRNFVPELKDLDRKYIYEPWKAPKSDLKKAGVSFLTTDQILDQVNRFKEGLSN 481
>gi|449304579|gb|EMD00586.1| hypothetical protein BAUCODRAFT_175264 [Baudoinia compniacensis
UAMH 10762]
Length = 647
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 119/287 (41%), Gaps = 81/287 (28%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS--QSAALKFGCLSVRRFYW 208
GGE+ L KL+ L+ E +G + + SP P + S L FG LS R FY
Sbjct: 240 GGESVVLGKLHIILADED---YTGTFEKPKTSPAAFEPQATCLTSPYLHFGALSCRYFYH 296
Query: 209 ALHDHFNTIHEGRPPSH---FNITGQLIWRE-YFYTMSAHNPYYDQMEKNPICLNIPW-L 263
+ + + + P ++TGQL++R+ YF +A + Q N C IPW L
Sbjct: 297 RIEEIVERRRKAKRPVSEPPTSLTGQLLFRDMYFAAQAALGYSFGQTYNNDHCRFIPWHL 356
Query: 264 PESHPNKEKYLNA---------------WKNGQTGYPFIDAVMRQLR------------- 295
P K + W+ G+TG+P+IDA+MRQL+
Sbjct: 357 PSRIDVSTKLITGDYEVDDEVKQREFIRWREGKTGFPWIDAIMRQLKYEGWIHHLARHAV 416
Query: 296 ------------------------------------RLLDCTY-------CVCPVNFGRR 312
+ L CT C P+ FGR+
Sbjct: 417 ACFLTRGGCYISWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFYSQFYRCYSPIAFGRK 476
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
D +G +I++YVPEL+ P +YIYEP KAP+ Q+KA +I D E
Sbjct: 477 WDDNGDFIRKYVPELKDMPKKYIYEPHKAPVQDQKKAGVLIKGDGEE 523
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 168/448 (37%), Gaps = 122/448 (27%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL----C 58
PGT +G +L L L+R S G+L I +G P+ I + L R+ K+ C
Sbjct: 42 PGTWQMGSATRCWLHHSLVSLNR---SFDGKLGIFRGEPLEILKTLARQHKAEKIVWNRC 98
Query: 59 FE-------------QDCEGVK-----------PYQSFPTGSHPPRYQPCKTLLNFRDLS 94
+E EG++ P++ + P Y+ L+
Sbjct: 99 YEPWRMKRDQGIKATLQAEGIEVSSFNGSLLWEPHEVLKQNNTP--YRVFTPFFRRGCLN 156
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQ-REVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
LPPR R + T+ S+ ++++L ++P Q + W GE
Sbjct: 157 ALPPRTPLPAPQRMLMADTIDNSISVQDLNLLPSIPWDSQL-----------ISHWSVGE 205
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
A L L Q + +K G Q P AL FG LS ++
Sbjct: 206 NSARQSLLRFLDQGLNGYKEGRDFPGQNHVSRLSP------ALHFGELSPNTVWY----E 255
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKN--PICLNIPWLPESHPNKE 271
G+ HF +L WRE+ YT+ HN +D EKN PW+ + +
Sbjct: 256 AKRCGSGQDLDHF--LSELGWREFAYTLLYHN--HDMPEKNLQSAFDAFPWV-----HND 306
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------L 297
+ L W+ G TGYP +DA MR+L + L
Sbjct: 307 ETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMITGSFLVKNLLLHWHYGQQWFHDCL 366
Query: 298 LD---------------CTYCVCP-------VNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LD C P V G + DPDG Y R+VPEL + P +Y+
Sbjct: 367 LDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEKFDPDGTYTLRFVPELAKLPKKYL 426
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVN 363
+ PW+AP + ++A + K YPE IV+
Sbjct: 427 FNPWEAPKNILQEAGITLGKTYPEPIVD 454
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 169/446 (37%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLRHAIMDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G NQ + + P L FG +SV+ Y H N E R
Sbjct: 211 FFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N N PW E E+ L W
Sbjct: 261 CSFFEKQVISFIRQLIWREFSYYLLYHYPFTVYRPLNKSFENFPWDKE-----EELLRVW 315
Query: 278 KNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------ 304
+ G+TGYPFIDA M R+ ++ V
Sbjct: 316 QKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+R+VPELR P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +KAN + YP IV+H A
Sbjct: 436 PAHILQKANIKLGDTYPYPIVDHKAA 461
>gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens]
Length = 278
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 55/76 (72%)
Query: 302 YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
+C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW AP VQ+ A C+I YP+ +
Sbjct: 72 HCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAAKCVIGVHYPKPM 131
Query: 362 VNHVQASLENKQYLKK 377
VNH +AS N + +K+
Sbjct: 132 VNHAEASCLNIERMKQ 147
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/454 (23%), Positives = 170/454 (37%), Gaps = 120/454 (26%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R F++ L DLD L++ G +L + +G P + + L + + +D
Sbjct: 47 GMARVAFMIAALRDLDASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRD------ 100
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSG----------LPPRPKEDIDFRHVTFGT----- 113
Y F R Q + +L RDL+ + P D R T T
Sbjct: 101 YTPFAR----QRDQHIEAML--RDLNVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRR 154
Query: 114 -MSESLQREVSLFQTV------PKPEQFHKYPEMDFGDPLIRWL-----GGETEALIKL- 160
+ QR + + P P+ P D D + + GGET +L
Sbjct: 155 WRALVEQRRDDVLRAYEPPVLQPVPDGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLA 214
Query: 161 ---NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT 216
+ R + I + G L L P TS+ S L+FGC++ R A + +
Sbjct: 215 AFLDPRATHGIAGYADGRNL-------LAEPATSRLSPYLRFGCVAPRAALRAALNLLDR 267
Query: 217 IHEGRPP--------SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
E + S G+L WR+++Y + H+P+ + P + W
Sbjct: 268 AGEEQDAECAATLTRSIETWIGELAWRDFYYQILWHHPHVLRSAFKPQYDALEW-----E 322
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQ----------------------------------L 294
N +AWK G+TGYP +DA MRQ +
Sbjct: 323 NDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRARMIVASFLTKDLLIDWRWGERYFM 382
Query: 295 RRLLDCTYCVC----------------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
++L+D + PV+ G+ DP G Y++RY+PEL P
Sbjct: 383 QQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQTFDPKGAYVRRYLPELEAVPD 442
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+YI+ PW P Q++ II +DYP +V+H +
Sbjct: 443 RYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAE 476
>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%)
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
C CPV FGRR DP G YI+RY+P L+ +P +YIYEPW AP VQ+ ANC++ DYP ++
Sbjct: 568 CYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMI 627
Query: 363 NHVQASLENKQYLKK 377
NH + S N + +K+
Sbjct: 628 NHAEGSRLNIERMKQ 642
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRL 87
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 173/453 (38%), Gaps = 110/453 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQL-KSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+GY R +F + L +L++ L ++ G QL + G P Q++ E + +D
Sbjct: 44 ELGYPRVKFWHDSLKELEQDLSETDGKQLVVRNGDPAEEIQRVVEETEADAVYHNRDY-- 101
Query: 66 VKPYQSFPTGSHPPRYQ-PCKTLLNFRDL-----------SGLPPRPKEDIDFRHVTFGT 113
+PY + P K+ F+D+ SG P + + +
Sbjct: 102 -RPYSKKRDQKVEDEIEVPVKS---FKDIVMFEKEEILTNSGTPYKVYS---YYKKKWFK 154
Query: 114 MSESLQREVSLFQTVPKPEQFH--KYPEMDFGDP--LIRWLGGETEALIKLNERLSQEIE 169
+ ++V + T P+ E E+ F P + W GG L Q ++
Sbjct: 155 NDKRRPQKVKDYST-PELESVEIPSVSELGFEKPEDMSVWEGGRENGL--------QRMK 205
Query: 170 SFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
FK + +Q TS+ S LKFG +S+R +W + E S
Sbjct: 206 QFKQNIKDYDQARDYAWRDSTSKLSPHLKFGTVSIREVFWEAE----RMKEDDSDSEGIE 261
Query: 229 TGQ--LIWREYF------YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
T Q L WR+Y+ Y P+ D+ N + E P K NAW G
Sbjct: 262 TWQEELAWRDYYMQILWNYPHEVDEPFMDKYRGNEPDWD---SKEDAPQK---WNAWVEG 315
Query: 281 QTGYPFIDAVMRQL----------------------------------RRLLDC------ 300
+TGYPF+DA MRQL R +D
Sbjct: 316 KTGYPFVDAGMRQLKKTGWMHNRLRMVVTNFSCKDLWLEWRNVHDYFSRMFVDAEIASMV 375
Query: 301 -----TYCVC-----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
+Y + P++ R DPDG YI+++VPEL P ++I+EPWK
Sbjct: 376 GGIQWSYSIGTDAQPYFRVFNPMSQSERYDPDGKYIRKWVPELEDVPDEHIHEPWKMSQS 435
Query: 345 VQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
QE+ I DYPE IV+H + E+ + +K
Sbjct: 436 QQEQCGVTIGDDYPEPIVDHDEKRKESVERFEK 468
>gi|345853246|ref|ZP_08806153.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
gi|345635300|gb|EGX56900.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
Length = 456
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/428 (25%), Positives = 161/428 (37%), Gaps = 109/428 (25%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC------- 63
NR FL +CL DLD L+ GG+L + +G + K+ E + ++ D
Sbjct: 49 NRLAFLADCLRDLDTGLRERGGRLVLREGDLVDQVGKVAAEADADEVHMASDVSAHARRR 108
Query: 64 -EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS-ESLQRE 121
EG++ + R T+ + P + F S E L+
Sbjct: 109 EEGLRRALE----AEGVRLHVHDTVTTAVAPGAVTPAGSDHFAVFTPYFRRWSKERLRDP 164
Query: 122 VSLFQTVPKPEQFHKYPEMDFGDPL-IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQ 180
+ +TV + PE DPL +R GE L + +E + +L ++
Sbjct: 165 LRAPRTV-------RVPEGVGSDPLPVR---GEVRGLSEGLAEGGEEAGRTRLTAWLRHR 214
Query: 181 VSP------DLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGR---PPSHFNITG 230
VS DL G TS+ S L FG LS +H R P
Sbjct: 215 VSAYEDRHDDLAGDATSRLSPHLHFGTLSP----------VELVHRARRAGGPGADAFVR 264
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
QL WR++ + A P D + + W E ++ + AWK G+TGYP +DA
Sbjct: 265 QLAWRDFHRQVLASRP--DAATADYRARHDHWRSEREAGED--IAAWKEGRTGYPVVDAA 320
Query: 291 MRQLR---------RLLDCTY--------------------------------------- 302
MRQLR RLL ++
Sbjct: 321 MRQLRHEGWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDIANNQLNWQWVAGTG 380
Query: 303 -------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISK 355
+ PV RR DPDG Y++R+VPEL + + ++EPW+ P E+A
Sbjct: 381 TDTRPNRVLNPVAQARRYDPDGGYVRRWVPELAEVAGRAVHEPWRLP--DDERAGL---- 434
Query: 356 DYPERIVN 363
DYP+RIV+
Sbjct: 435 DYPDRIVD 442
>gi|21758676|dbj|BAC05354.1| unnamed protein product [Homo sapiens]
Length = 194
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 302 YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
+C CPV FGRR DP+G YI+RY+P LR FP +YIY+ W AP G+Q+ A C+I +YP+ +
Sbjct: 19 HCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDLWNAPEGIQKVAKCLIGVNYPKPM 78
Query: 362 VNHVQASLENKQYLKK 377
VNH +AS N + +K+
Sbjct: 79 VNHAEASRLNIERMKQ 94
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 179/448 (39%), Gaps = 121/448 (27%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L +LD L++ GG L ++ G+P + KL EL + D E V +
Sbjct: 71 RIEFILAALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYEPVAIERD 130
Query: 72 FPTGSHPPRY-QPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
G+ R + + L F+D L+G +P F + R+
Sbjct: 131 ---GTVRERLAEAGRQWLTFKDQVIFERDEVLTG-QSKP-------FTVFTPYRNAWLRQ 179
Query: 122 VSLFQTVPKP-EQFHKY-----PEMDFGDPLIRWLGGETEALIKLN--------ERLSQE 167
+S F P P E + K + D P + LG L +LN +RL +
Sbjct: 180 LSAFDLKPYPVETYAKRLAALPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDD 239
Query: 168 IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN 227
+ + Y + P GP + S L+FG +S+R H+ + +G+ + +
Sbjct: 240 FMT-RIDSYADRRDFPAAKGP-SYLSIHLRFGTVSIRTLARLAHE-MSLQPDGQGSATW- 295
Query: 228 ITGQLIWREYFYTMSAHNPY----------YDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+LIWR++++ + AH+P YD++ W E ++ AW
Sbjct: 296 -LSELIWRDFYFMILAHHPRLARGASFREEYDRLR---------W--EQGLQADEAFAAW 343
Query: 278 KNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------ 304
NG+TGYP +DA M QL R++ ++ V
Sbjct: 344 CNGRTGYPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFS 403
Query: 305 -------------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C PV + D +G +IKRY+P+L + P ++I+ PW A
Sbjct: 404 ANNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLA 463
Query: 342 PLGVQEKANC--IISKDYPERIVNHVQA 367
G + A+C ++ KDYP IV+H +A
Sbjct: 464 --GAERLADCGVVLGKDYPAPIVDHAEA 489
>gi|433459950|ref|ZP_20417586.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432192066|gb|ELK48979.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 474
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 113/284 (39%), Gaps = 79/284 (27%)
Query: 139 EMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
E DFG GE +A +L + L +I Y + P + G + S L+
Sbjct: 197 EADFGGV------GEADAWARLEQFLDADIYD-----YDERRDFPAVDGT-SLMSRYLRT 244
Query: 199 GCLSVRRFYWALHDH--FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI 256
G +SVR Y +HD F EG +L WR+++ + P E
Sbjct: 245 GAISVRSVYHQIHDQVDFRKKTEGVE----TYISELAWRDFYNMIYHFYPNAHDEEVVEK 300
Query: 257 CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------------------- 294
IPW N E L WK G+TG+P IDA MRQL
Sbjct: 301 YQGIPW-----NNDEDVLERWKEGRTGFPIIDAAMRQLNESGWMHNRLRMAVASFLTKDL 355
Query: 295 ------------RRLLD-------------CTYCVCPVNFGR---------RLDPDGIYI 320
+L+D + PV + R R DP G +I
Sbjct: 356 LMDWRKGERYFQEKLVDYDPASNIGGWQWAASTGTDPVPYFRVFNPTRQSERFDPHGRFI 415
Query: 321 KRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
K ++PELR P +YI+EP K P QEKA C+I +DYPE +V+H
Sbjct: 416 KEWLPELRDVPKKYIHEPAKMPENEQEKAKCMIGEDYPEPLVDH 459
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 170/446 (38%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLRHAIMDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G NQ + + P L FG +SV+ + H N E R
Sbjct: 211 FFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMF---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N N PW E E+ L+ W
Sbjct: 261 CSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKE-----EELLSVW 315
Query: 278 KNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------ 304
+ G+TGYPFIDA M R+ ++ V
Sbjct: 316 QKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+R+VPELR P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +K+N + YP IV+H A
Sbjct: 436 PEHILQKSNIKLGNTYPYPIVDHKAA 461
>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425266|ref|ZP_17402297.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|423506140|ref|ZP_17482730.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449089482|ref|YP_007421923.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112481|gb|EJQ20359.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|402449071|gb|EJV80909.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449023239|gb|AGE78402.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/446 (23%), Positives = 169/446 (37%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPINRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G NQ + P L FG +SV+ + H N E R
Sbjct: 211 FFSSKLASYSEGRDFPNQNVHSMLAP------YLSFGQISVKLMF---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N + PW E E+ L W
Sbjct: 261 SSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKE-----EELLRVW 315
Query: 278 KNGQTGYPFIDAVMRQ----------------------------------LRRLLDCTYC 303
+ G+TGYPFIDA MR+ + LLD
Sbjct: 316 QKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 304 ----------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+R+VPELR P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +K+N + YP IV+H A
Sbjct: 436 PEHILQKSNIKLGNTYPYPIVDHKAA 461
>gi|359415637|ref|ZP_09208066.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
gi|358034017|gb|EHK02493.1| deoxyribodipyrimidine photo-lyase [Candidatus Haloredivivus sp.
G17]
Length = 438
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/427 (24%), Positives = 172/427 (40%), Gaps = 87/427 (20%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+GY R +F E L + L+ L I +G+PI +KL E K+ F +D
Sbjct: 13 LGYPRVKFWRESLIEFKEDLQEKNKDLVIKKGNPIEQLKKLIEETGAEKIYFNRD----- 67
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT-FGTMSESLQREVSLFQ 126
Y + + +F+D++ KE+I T + T + ++ +
Sbjct: 68 -YSKYSRERDEKFRGLDIEVEDFKDVTMFE---KEEILTNDGTPYKTYTYYAKKWFKKEK 123
Query: 127 TVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKLNERLSQE-----IESFKSGVYLSNQ 180
P+ + ++ P ++ + P ++ LG E + ++E IE FK + ++
Sbjct: 124 RRPQEPENYEVPTVESDEIPSLQKLGFEEPENFEWKWNPAREGGLKRIEEFKEKILDYDE 183
Query: 181 VSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITG------QLI 233
TS+ S LKFG +S+R +W I P S + +G +L
Sbjct: 184 DRDYAWKDSTSKLSPHLKFGTVSIRECFWEAE----RIKARNPNS--DTSGVKTWQEELA 237
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WR++++ M + P +I W S + + A+ NG+TG+PF+DA MRQ
Sbjct: 238 WRDFYFQMLWNYPESQDKALLEQFRSIDW--RSKEDAKGDWEAFINGKTGFPFVDAGMRQ 295
Query: 294 L--------RRLLDCTYCVC---------------------------------------- 305
L R + T C
Sbjct: 296 LKKTGWMHNRLRMVVTSFACKDLWLDWKDLHQFFNENFVDAEIASMIGGIQWAYSIGTDA 355
Query: 306 --------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
P G + DPDG YI+++VPELR P +YI+ P + Q+++NCII +DY
Sbjct: 356 QPYFRVFNPWTQGEKYDPDGEYIRKWVPELRDVPDEYIHRPQEMNQIAQKESNCIIGEDY 415
Query: 358 PERIVNH 364
PE IV+H
Sbjct: 416 PEPIVDH 422
>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
Length = 513
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 169/453 (37%), Gaps = 100/453 (22%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L L R L+ GG L ++ G+ +L EL + D E +
Sbjct: 77 RVEFILRSLEPLRRALEDSGGGLIVLDGTARQAIPRLAAELEVEAVFANHDYEPAANDRD 136
Query: 72 FPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ LL F+D L+G RP F + R V
Sbjct: 137 --EAVRRTLAADSRVLLTFKDQVIFERDEILTG-QGRP-------FSVFTPYKNAWLRTV 186
Query: 123 SLFQTVPKPEQFHK-----YPEMDFGD-PLIRWLGGETEALIKL-----NERLSQEIESF 171
F P P + H+ P+ G P + LG L + ++ + F
Sbjct: 187 RPFDLRPYPIEKHQETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEF 246
Query: 172 KS--GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT 229
S G Y + P + GP + S L+FG +S+R A HD T+ G S
Sbjct: 247 LSRIGDYGRRRDFPAVRGP-SYLSVHLRFGTISIRTLARAAHD---TMLRGGAASEGATV 302
Query: 230 --GQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
+LIWR++++ + H+P + + + + W+ + ++Y AW + +TGYP
Sbjct: 303 WLSELIWRDFYFMILHHHPRVAEGKSFHAEYDGLRWIAPA--TGDRYFAAWCDARTGYPL 360
Query: 287 IDAVMRQLR---------RLLDCTYCV--------------------------------- 304
IDA M Q+R R++ ++ V
Sbjct: 361 IDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWA 420
Query: 305 ----C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
C PV + DP G +I+RY+P L P +YI+ PW AP V A
Sbjct: 421 ASTGCDAQPYFRIFNPVTQSEKFDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAG 480
Query: 351 CIISKDYPERIVNHVQA---SLENKQYLKKEKA 380
+ KDYP IV H A +LE +K KA
Sbjct: 481 VTLGKDYPRPIVQHDVARKETLERYGVVKSAKA 513
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 112/444 (25%), Positives = 168/444 (37%), Gaps = 96/444 (21%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
F+L CL +L R L HG L G P+ + + + + +D E +
Sbjct: 52 FMLGCLEELRRSLALHGVSLAWRMGDPVESVLQAADDFKVDAVYWNRDYEPAALERDREV 111
Query: 75 GSHPPRYQPCKTLLNFRD-----------LSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
Q +T+ F+D LSG P + R T + +
Sbjct: 112 QQR--LAQQGRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIP 169
Query: 124 LFQTVPKPE--QFHKYPEM-DFG-DPLIRWLG-GETEALIKLNERLSQEIESFKSGVYLS 178
F K K+P + D G + + W+ GE A +L L + + +G L
Sbjct: 170 SFPPAGKASTPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNL- 228
Query: 179 NQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH---FNITGQLIWR 235
P + G + S L+FG +S R +H N + +G S F +L+WR
Sbjct: 229 ----PAIDGT-SKLSPHLRFGTVSARTL---VHAALNALAKGGAVSRADVFTWVDELVWR 280
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPE---SHPNKEKYLNAWKNGQTGYPFIDAVMR 292
E+F + A P+ + P P LPE + P +++ AW G TGYP +DA MR
Sbjct: 281 EFFQQVLAAFPH---VAHGPFKAK-PGLPEPRPAGPERDRLFAAWSQGLTGYPIVDAGMR 336
Query: 293 QL----------------------------------RRLLDCTYCVCPVNF--------- 309
QL RL+D N+
Sbjct: 337 QLNQTGWMHNRVRMVVASFLVKDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTD 396
Query: 310 -------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
+ D +G Y++RYVPEL+ P ++I+EP P Q +A C I D
Sbjct: 397 AMQGYRIFNPRIQSEKFDAEGEYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSD 456
Query: 357 YPERIVNHVQASLENKQYLKKEKA 380
YPE IV+H QA ++YL KA
Sbjct: 457 YPEPIVDHRQA---RQEYLDLGKA 477
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 160/441 (36%), Gaps = 106/441 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC--------EGV 66
FL L LD L+ G +L + G P + + RE T + E D E V
Sbjct: 53 FLFAALRSLDAALRRRGSRLIVRAGRPEQVLPTVVRESGATLVMAEADGSPYARRRDEAV 112
Query: 67 K---PYQSF------PTGS-HPPRYQPCKTLLNFRDLSGLPPRPK-EDIDFRHVTFGTMS 115
P Q P GS P +P + FR P P +DI +
Sbjct: 113 ARSVPLQLVEGSTLRPLGSIRAPTGEPYRVYSQFRRAWFRLPIPSPQDI--------LPA 164
Query: 116 ESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGV 175
V + P PE PE R+ E A +L L+Q + S+
Sbjct: 165 PPRLPPVPRLASEPIPESPLAVPE--------RFAPSEDAARQRLQHFLAQGLASY---- 212
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
+L L G +SQ S +FG LSVR + A + + + +L+W
Sbjct: 213 HLRRNA---LDGSGSSQLSPYFRFGLLSVREAWCAAARYLDEPDAAAGARAW--LDELLW 267
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
RE++ + A P +M P ++ W P L W+ G+TG+P +DA MRQL
Sbjct: 268 REFYQHLLAAWPESARMSMQPEFRDVAW-----PGSNDALARWQEGRTGFPVVDAAMRQL 322
Query: 295 ----------------------------------RRLLDCTYCVC--------------- 305
R L+D
Sbjct: 323 VSEGWMSNRARMIVASFLSKLLLVDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAA 382
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV G + DP+G +++ ++PEL P +Y++ PW+ P+ VQ +A C I DYP
Sbjct: 383 PYFRIFNPVLQGEQHDPNGSWVRTWLPELANVPREYLFAPWRMPIEVQLRAGCRIGHDYP 442
Query: 359 ERIVNHVQASLENKQYLKKEK 379
IV + A ++ + +
Sbjct: 443 APIVEYESARARALEWFRSVR 463
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 107/452 (23%), Positives = 181/452 (40%), Gaps = 113/452 (25%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R +FLLE +ADL + L+S G L I +G P I +L +EL ++ + Q+ +
Sbjct: 51 GKFRAKFLLESVADLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEE- 109
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK----------EDIDFRH----VTFGTM 114
+ +N + LSG P + K +D+ F F
Sbjct: 110 -------------LAVEKAVN-KALSGFPVQIKTFWTATLYHPDDLPFTLNQLPELFTNF 155
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEAL 157
+ ++R + T P P++ K P++D+G+ ++ + GGE
Sbjct: 156 RKQVERHWEIRTTYPTPKKLTKLPKIDWGNLPSFNDLGLTEPILDQGGVLSFQGGEMAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L FGCLS R Y + + T
Sbjct: 216 SRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + + +L+WR++F + + + + LN+PWL + N W
Sbjct: 272 -RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELNLPWLEDWER-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLR-------------------------RL-------LDCTYCVC 305
G+TGYP +DA MR+L RL L Y VC
Sbjct: 326 CEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G + DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGYYLRHWLPELDLIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
L Q++ I+ +YP IV+ Q+ N++
Sbjct: 445 SLEEQKRYGVILGVNYPRPIVDFFQSIKHNEK 476
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 163/423 (38%), Gaps = 91/423 (21%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN---------FTKLCFEQDCEG 65
+L LA LD LK G +L +++GS S +L RE+ + E+D E
Sbjct: 56 WLHHSLASLDESLKGLGSRLVLLRGSSKSALVELCREMGARAVFWNRRYEPAVVERDTEI 115
Query: 66 VKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLF 125
K + ++ L+ + SG P + ++H+ + L + +L
Sbjct: 116 KKSLVDCGVQARSFNGSLMQSPLSVANKSGTPFKVFTPF-WKHIQNLSTRTPLAKPDALT 174
Query: 126 --QTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSG---VYLSNQ 180
+++PK E + + P + W G E I + + + F G Y ++
Sbjct: 175 TPKSLPKGESLESFELL----PRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDR 230
Query: 181 VSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYT 240
+P + G + S L FG +S + + AL H Q+ WRE+ +
Sbjct: 231 DTPSVRGV-SRLSPHLHFGEISPNQIWHALDRK----------KHEPYLRQIAWREFAHH 279
Query: 241 MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR----- 295
+ H P PW +L AW+ GQTGYP +DA MR+L
Sbjct: 280 LLFHFKDTPSEPLRPEFAAFPWT-----RNPGWLKAWQTGQTGYPIVDAGMRELWQTGWM 334
Query: 296 ----RLLDCTYCV-----------------------------------C----------- 305
R++ ++ V C
Sbjct: 335 HNRVRMIASSFLVKHLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIF 394
Query: 306 -PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P+ G R D DG Y +R++PEL + P +Y+++PW+AP + EKA + +YP IV+H
Sbjct: 395 NPITQGERFDGDGTYTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDH 454
Query: 365 VQA 367
+A
Sbjct: 455 GKA 457
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 167/445 (37%), Gaps = 107/445 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT-----------KLCFE 60
R RFLLE +ADL R L+ G L + +G P + L EL +L E
Sbjct: 57 RARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVE 116
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS-GLPPRPKEDIDFR---HVTFGTMSE 116
+D + + P R TL++ DL + P+ DFR +
Sbjct: 117 RDLQAALAPLNVPV-----RSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPP 171
Query: 117 SLQREVSLFQTVPKPEQFHKYPEMDFGDP------LIRWLGGETEALIKLNERLSQE--I 168
P + + ++ P ++++ GGET L +L E Q+ +
Sbjct: 172 LPAPAKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLL 231
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGR--PPS 224
+S+K Q + G S SA L GCLS R +H+ T R S
Sbjct: 232 KSYK-------QTRNGMLGADYSSKFSAWLALGCLSAR----YIHEQVQTYETKRIKNDS 280
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--LNAWKNGQT 282
+ + +L+WR+YF ++A + L+IPW KE + W+ GQT
Sbjct: 281 TYWLIFELLWRDYFRFIAAKHGDRLFYTAGLRGLDIPW-------KEDWERFELWRTGQT 333
Query: 283 GYPFIDAVMRQL----------------------------------RRLLDCTYCVCPVN 308
G+P +DA MR+L RL+D N
Sbjct: 334 GFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGN 393
Query: 309 F---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
+ R DPDG Y+K ++PEL P ++EPWK Q+
Sbjct: 394 WNYTAGVGNDARGFRFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQK 453
Query: 348 KANCIISKDYPERIVNHVQASLENK 372
+ + DYP+ +V+ Q++ N+
Sbjct: 454 RFGVRLGVDYPQPVVDLFQSAAANE 478
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 172/451 (38%), Gaps = 115/451 (25%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-----GVKPY 69
+L L D +K G L + +G+P + QKL E N + + E K
Sbjct: 51 WLHHALNDFKTSIKKIEGTLIVQKGNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKEL 110
Query: 70 QSFPTGSHPPRYQPCKTLLNFRDLSG-LPPRP----KEDID--------FRHVTFGTMSE 116
Q+F + +N R G L P KE+ D ++ ++S
Sbjct: 111 QAFFSEQQ----------INIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSS 160
Query: 117 SLQREVSLFQTVPKPEQFHKYPEMDF-----GDPLIR--WLGGETEALIKLNERLSQEIE 169
++++ S+ Q KP + ++D D I+ W E A+ L ++
Sbjct: 161 AVKKVTSI-QASSKPVESLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLL 219
Query: 170 SFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN-- 227
++ G + P L G LS R L+ + T E F
Sbjct: 220 HYEKGRDFPAEALNSFLSP------YLATGQLSAR----VLYHYLRTKAEKVGSDAFEQQ 269
Query: 228 ---ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
QLIWR++ Y + H P+ N W + N+E L AWKNG+TGY
Sbjct: 270 AEMFIRQLIWRDFAYQLLYHFPHTTTEPLNEKFKQFQW---ADGNEE--LQAWKNGKTGY 324
Query: 285 PFIDAVMRQLR---------RLLDCTYCV------------------------------- 304
P +DA MR+L R++ ++ V
Sbjct: 325 PLVDAGMRELWETGFMHNRVRMVAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQ 384
Query: 305 ----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
P+ + D +G YIK+++PEL+ P YI++PW+AP V EK
Sbjct: 385 WVAGSGADAAPYFRIFNPITQSEKFDKEGEYIKKWLPELKDIPSSYIHKPWEAPADVLEK 444
Query: 349 ANCIISKDYPERIVNHVQA---SLENKQYLK 376
AN ++K YP IV+H A +LE+ Q++K
Sbjct: 445 ANVTLNKTYPAPIVDHKAARERALEHYQHIK 475
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 169/436 (38%), Gaps = 91/436 (20%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
++G L L LD L+ G +L + G P++ Q+L E + + + +D
Sbjct: 45 YVGAALIAVTLAMLEALDHDLQQRGSRLIVRHGQPLAELQRLVSETQASGVYWNRD---Y 101
Query: 67 KPY--QSFPTGSHPPRYQPCKTLLNFRDLSGLPPRP-KEDIDFR-HVTFGTMSESLQREV 122
PY + H R Q + +F D + P K + + +V +G+ + E+
Sbjct: 102 LPYAIKRDSAVKHWLREQGLQAH-SFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWS-EL 159
Query: 123 SLFQT---VPKPEQFHKYPEMDFGD---PLIRWLGGETEALI-KLNERLSQEI------- 168
+ Q VP P +F P D P + LG E + I ++ E ++Q+
Sbjct: 160 AYHQAEQLVPAPSKFVA-PPSDLASLPIPSLADLGFELQQTIPQVGETIAQQRLAQFFDR 218
Query: 169 -ESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT-IHEGRPPSH 225
+ Y + P G TSQ S L+ G +S+R+ D ++ +
Sbjct: 219 RQKLSVLKYTKAREVPAEAG--TSQLSVDLRMGTISIRQCLKQAVDLLTEPLNAEQRQGV 276
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
+L WR+Y+ + HNPY +P I W N AW+ GQTGYP
Sbjct: 277 DTWLKELAWRDYYTQLIYHNPYMLNGSLDPRYDQIIWR-----NDPSEFLAWQQGQTGYP 331
Query: 286 FIDAVMRQLR---------RLLDCTYCV------------------C------------- 305
+DA RQL R++ ++ + C
Sbjct: 332 IVDAGQRQLNQMAWMHNRVRMISASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQW 391
Query: 306 -----------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
P+ ++ DPDG YI+R+VPEL P YI+EPW P VQ
Sbjct: 392 AAGSSGPSAQPYFRIFNPIAQSKKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAH 451
Query: 349 ANCIISKDYPERIVNH 364
C+I +DYP +V H
Sbjct: 452 VGCVIGRDYPAPLVEH 467
>gi|385206442|ref|ZP_10033312.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
gi|385186333|gb|EIF35607.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
Length = 499
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 176/447 (39%), Gaps = 119/447 (26%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L +LD L++ GG L ++ G+P + L EL + D E V +
Sbjct: 71 RIEFILAALGELDEALRTDGGGLIVLYGNPADLVPTLADELGADAVFANHDYEPVAIERD 130
Query: 72 FPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ + L F+D L+G +P F + R++
Sbjct: 131 ETVREQLA--EAGRQWLTFKDQVIFERDEVLTG-QSKP-------FTVFTPYRNAWLRQL 180
Query: 123 SLFQTVPKP-EQFHKY-----PEMDFGDPLIRWLGGETEALIKLN--------ERLSQEI 168
S F P P E + K+ +D P + LG L +L+ +RL +
Sbjct: 181 STFDLKPYPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDF 240
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
+ + Y + P GP + S L+FG +S+R H+ + +G+ + +
Sbjct: 241 MT-RIDSYADRRDFPAAKGP-SYLSIHLRFGTVSIRTLARLAHE-LSLQPDGQGSATW-- 295
Query: 229 TGQLIWREYFYTMSAHNPY----------YDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+LIWR++++ + AH+P YD++ W E P ++ AW
Sbjct: 296 LSELIWRDFYFMILAHHPRLARGASFKEEYDRLR---------W--EQGPEADEAFAAWC 344
Query: 279 NGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------- 304
+G+TGYP +DA M QL R++ ++ V
Sbjct: 345 DGRTGYPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSA 404
Query: 305 ------------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
C PV + D +G +IKRY+P+L + P ++I+ PW A
Sbjct: 405 NNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLA- 463
Query: 343 LGVQEKANC--IISKDYPERIVNHVQA 367
G + A C ++ KDYP IV+H +A
Sbjct: 464 -GAERLAECGVVLGKDYPAPIVDHAEA 489
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 108/448 (24%), Positives = 172/448 (38%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G NQ + + P L FG +SV+ Y H N E R
Sbjct: 211 FFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
S F + QLIWRE+ Y + H P+ Y + KN + PW E E+ L
Sbjct: 261 CSFFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+R+VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +K+N + YP IV+H A
Sbjct: 434 EAPEHILQKSNIKLGNTYPYPIVDHKAA 461
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 172/432 (39%), Gaps = 105/432 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
F+LE L L + GG+L + +G + + + L E + F +D E P+
Sbjct: 54 FMLESLEALALSYANIGGKLIVRRGQVLEVLKSLVGETRAQAIYFNEDYE---PFAKMRD 110
Query: 75 GSHPPRYQPCKTLLN-FRDLSGL-PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE 132
+ ++ + F D P R +D + F ++ ++L +P P+
Sbjct: 111 QAVQSEFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQ---KKWLALSGNIPTPQ 167
Query: 133 ---------QFHKYPEMDFGD--------PLIRWLGGETEALIKLNERLSQEIESFKSGV 175
+ P D P+++ GGE + L +L LSQ I +K
Sbjct: 168 PALTRISTPELPSIPLPKTSDIRKKFSVQPIVQ--GGEPKGLKRLRAFLSQNIYHYKE-- 223
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI---TGQL 232
L + + + T + SA L+FG LS+R + H+ + + P+ I +L
Sbjct: 224 -LRDFPATNAT---SLLSADLRFGTLSIRHVF---HESMRLVPQASEPAREGIQTFISEL 276
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV-- 290
IWRE+++ + H P+ ++ P N+ W N E + AWKNGQTGYP +DA
Sbjct: 277 IWREFYFQILDHFPHVEKHSFKPEFENLKW-----ENNEVFFEAWKNGQTGYPIVDAAMR 331
Query: 291 -MRQ-------------------------------LRRLLDCTYCVC------------- 305
+RQ ++ L+D
Sbjct: 332 ALRQTGWMHNRLRMIVASFLTKDLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTD 391
Query: 306 ---------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW----KAPLGVQEKANCI 352
PV ++ DP G +I++YVPEL+ P++YI+ P K+PL +E
Sbjct: 392 AQPYFRIFNPVLQSQKFDPKGEFIRKYVPELQAVPVRYIHFPAEILRKSPLLARE-IGVA 450
Query: 353 ISKDYPERIVNH 364
+ KDYP IV H
Sbjct: 451 LGKDYPHPIVEH 462
>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
Length = 490
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 170/458 (37%), Gaps = 107/458 (23%)
Query: 12 RFRFLLECLADLDRQLKSHGGQ----LFIVQGSPISIFQKLKRELNFTKL-CFEQDCEGV 66
R F+ + LA+LD L+ G+ L +G P I L R+L + C + D
Sbjct: 48 RVEFICQSLAELDAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAA 107
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRD----------LSGLPP----RPKEDIDFRHVT-F 111
+ S + Q LL F+D L P P ++ R +T F
Sbjct: 108 IARDAQVARSLKSQGQ---LLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPF 164
Query: 112 GTMSESLQREV---------SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNE 162
+ +R++ S + +P P+ G L + G + L
Sbjct: 165 YLSAYPSERDLASKLADLPDSERRPIPTAADLGFAPDTLAGLRLPTGVSGARQLLADFLP 224
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD--HFNTIHEG 220
RL Q Y + + P L GP + S L+FG +S+R H+ H
Sbjct: 225 RLPQ---------YKTARDFPALKGP-SYLSVHLRFGTVSIRELARLAHEAAHNEDWSAA 274
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
+LIWR++++ + AH PY + P I W E+ + AW G
Sbjct: 275 AREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEW--ETGAEADPLFAAWCEG 332
Query: 281 QTGYPFIDAVMRQLR---------RLLDCTYCV--------------------------- 304
+TGYP +DA MRQL R++ ++ V
Sbjct: 333 RTGYPLVDAAMRQLNSSGYMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANN 392
Query: 305 ----------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PL 343
C PV + DPDG +I RYVPE+ Q P + + PW A PL
Sbjct: 393 GGWQWAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIARYVPEVAQLPSKLRHAPWLAKPL 452
Query: 344 GVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKE 378
+ E A + +DYP +V+H A +L LKKE
Sbjct: 453 ELAE-AGIALGRDYPLPVVDHAAAREKTLARYGILKKE 489
>gi|349803315|gb|AEQ17130.1| putative cry1 protein [Pipa carvalhoi]
Length = 100
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
PV FGRR DP+GIYI++Y+P L+ FP +YIYEPW AP +Q++A CII KDYP+ +V+H
Sbjct: 29 PVRFGRRTDPEGIYIRKYLPVLKNFPAKYIYEPWTAPEEIQKEAGCIIGKDYPQPMVDHK 88
Query: 366 QASLENKQYLKK 377
AS N Q +++
Sbjct: 89 LASEHNLQLMRQ 100
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 112/469 (23%), Positives = 185/469 (39%), Gaps = 107/469 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE LADL + L+ G L I +G P I +L +EL T + + Q
Sbjct: 50 FPKT---GNFRAQFLLESLADLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQ 106
Query: 62 D--CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
+ E + ++ +G + R + G +++ F+ + + +
Sbjct: 107 EVTAEELAVEKALESGLNKIRVKT-------ESFWGATLYHPDNLPFKIAHIPELFTNFR 159
Query: 120 REVSLFQTV----PKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALI 158
++V TV P P+ P ++ G ++++ GGET AL
Sbjct: 160 KKVEKASTVDPILPTPKSLSPLPAIEIGTLPDLAALGLETPIFDQRGVLKFRGGETAALE 219
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTI 217
+L E Q+ KS N + L G +S+ S L GC+S R Y A+ +
Sbjct: 220 RLEEYFWQK-NCLKSYKETRNGM---LGGDYSSKFSPWLASGCISPRYIYEAVQKY--EQ 273
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--LN 275
+ S + + +L+WR+YF + A + L++PW KE +
Sbjct: 274 QRVKNDSTYWLIFELLWRDYFRFICAKHGNKIFYPSGLQGLDLPW-------KEDWQRFQ 326
Query: 276 AWKNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYC 303
W+ G+TGYP +DA MR+L L Y
Sbjct: 327 LWQEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGLNWIMGAEWFESLLIDYD 386
Query: 304 VCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
VC N+G + DP G Y++ ++PEL P I+EPW
Sbjct: 387 VCS-NYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPLGEYLRHWLPELAAVPGDKIHEPW 445
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENKQ-YLKKEKANCIINKD 387
K Q++ + DYP+ +V+ ++ N+ Y +EK ++ D
Sbjct: 446 KLSSEEQKRYQVRLGVDYPQPVVDFFKSIKTNEAIYSTREKGTRLMTND 494
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/446 (23%), Positives = 169/446 (37%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G NQ + + P L FG +SV+ Y H N E R
Sbjct: 211 FFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N + PW E E+ L W
Sbjct: 261 CSFFEKQVISFIRQLIWREFSYYLLYHYPFTAYKPLNKNFEHFPWNKE-----EELLRVW 315
Query: 278 KNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------ 304
+ G+TGYPFIDA M R+ ++ V
Sbjct: 316 QKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+R++PELR P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWIPELRDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +K+N + YP IV+H A
Sbjct: 436 PEHILQKSNIKLGNTYPYPIVDHKAA 461
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 176/456 (38%), Gaps = 110/456 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+ G L I G P I L ++L + + Q
Sbjct: 50 FPKT---GNYRAQFLLESVADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQ 106
Query: 62 D--CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
+ E +K Q+ Q K +N G ED+ F + + +
Sbjct: 107 EVTAEELKVEQALKQ-----ELQKLKIQVN--SFWGATLYLTEDLPFEISQIPELYTNFR 159
Query: 120 REVSLFQTV----PKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALI 158
++V T+ P P++ P ++ G ++ + GGETEAL
Sbjct: 160 KQVEAKSTIENPLPTPKELPSLPSIELGQIPQISDLGLTTPIFDKRAVLNFKGGETEALT 219
Query: 159 KLNERLSQ-----EIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
+LN+ Q E + ++G+ +N S S L GC+S R Y + +
Sbjct: 220 RLNQYFWQLDCLKEYKETRNGMLGANYSS--------KFSPWLARGCISPRYIYEQVQKY 271
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ S + + +LIWR++F+ + A + + ++IPW + K
Sbjct: 272 --ETKRIKNDSTYWLIFELIWRDFFHFICAKHGNKIFYQSGLQGIDIPWKEDW-----KR 324
Query: 274 LNAWKNGQTGYPFIDAVMRQLRRL--------------------------------LDCT 301
N W+ G+TGYP +DA MR+L L
Sbjct: 325 FNLWQEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGINWQIGAEWFESLLVD 384
Query: 302 YCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYE 337
Y VC N+G + DP G Y++ ++PEL P I+E
Sbjct: 385 YDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQSKYYDPKGDYLRHWLPELALIPGSKIHE 443
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
PWK Q++ + DYP +V+ ++ N++
Sbjct: 444 PWKLTSEEQKRYQIRLGTDYPYPVVDFFKSVKANEK 479
>gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis]
Length = 216
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 55/208 (26%)
Query: 250 QMEKNPICLNIPWLPESHPNKEKYLNA--------------------------------- 276
+ME N ICLNIPW +H +++
Sbjct: 1 RMEDNEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLT 60
Query: 277 ----WKNGQTGYPF-----IDA------------VMRQLRRLLDCTYCVCPVNFGRRLDP 315
W+N + G + +DA RLLD + CP+ +RLDP
Sbjct: 61 RGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDP 120
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
G YIK+YVPEL P +YI+EPW P+ VQE + C+I YPER+++ AS N +
Sbjct: 121 MGQYIKQYVPELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMNAM 180
Query: 376 KKEKANCIINKDYPERIVNHVQASLENK 403
+ + N +I + P+ H + S E +
Sbjct: 181 RTLR-NSLIAEGAPDNGPPHCRPSNEEE 207
>gi|392587897|gb|EIW77230.1| hypothetical protein CONPUDRAFT_129501 [Coniophora puteana
RWD-64-598 SS2]
Length = 658
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 143/374 (38%), Gaps = 96/374 (25%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFE----- 60
+G NRF FLLE + DL L + +L +V+ P L R+ T L +E
Sbjct: 50 VGVNRFNFLLESMHDLSAALTTRSPESRLLVVRAPPQMAIPALCRQWKITHLVYERDTAG 109
Query: 61 ----QDCEGVKPYQSFP----------TGSHPPRY------QPCKTLLNFR--------- 91
+D E VK ++ T P R +P +L ++R
Sbjct: 110 YAAIRDSEVVKRVRALGGTEVLAVHGHTLYDPQRVVAANHGKPTMSLASWRKAAQGLPEP 169
Query: 92 ----------------DLSGLPPRPKE----DIDFRHVTFGTMSESLQREVSLFQTVPKP 131
DL R + D D T T E+ + + P
Sbjct: 170 ERPLPPPEKLPPPGDTDLGDAFTRKNQPIGCDTDLNEDTRET-------ELHCYDHIAGP 222
Query: 132 EQFHKYPEMD-FGDP--LIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGP 188
P MD G P GGETEAL +L+ ++ + + + SP P
Sbjct: 223 NNEFAIPSMDELGLPPATTSIYGGETEALRRLDAYCRDKV---RVATFAKPKTSPAEFDP 279
Query: 189 PTSQ--SAALKFGCLSVRRFYWALHDHFN-------TIHEGRPPSH--FNITGQLIWREY 237
P + S LKFGCLS R F W + D + + +P S N+ GQL++RE
Sbjct: 280 PATTLLSPYLKFGCLSSREFLWRVRDAVDEYVKSNGDAKKSKPASKPPENLEGQLLFREM 339
Query: 238 FYTMS-AHNPYYDQMEKNPICLNIPW---------------LPESHPNKEKYLNAWKNGQ 281
+Y A + Q+ N IC I W P + E+ +WK G+
Sbjct: 340 YYAAECAQGINFGQVRGNSICRFIDWKLPNQYAADGSKLVPRPRGNAVDEERFQSWKEGK 399
Query: 282 TGYPFIDAVMRQLR 295
TG+P+IDA+MRQLR
Sbjct: 400 TGFPWIDAIMRQLR 413
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Query: 308 NFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+F + D G ++++ PEL +FP +YIY P AP+ VQ+KA CII +DYP I++
Sbjct: 482 SFPEKFDKTGKLVRKFCPELAKFPDKYIYAPHTAPIDVQKKAGCIIGRDYPMPILDD--- 538
Query: 368 SLENKQYLKKEKANCI 383
K EK CI
Sbjct: 539 --------KLEKERCI 546
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 102/443 (23%), Positives = 169/443 (38%), Gaps = 92/443 (20%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L ++L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLETLGSTLIIRKGNTLEEILSLIKQLGITAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C+ D E ++ Q + CK + L + K++ +++ F
Sbjct: 95 ICY--DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYN 149
Query: 117 SLQREV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLN 161
+ Q++V S Q++ + H P + + + W E A
Sbjct: 150 AFQKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFK 209
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 210 KFFSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSNEKQCSL 263
Query: 222 PPSHFN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
N Q IWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVNKPLNKNFEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYPFIDA M R+ ++ V
Sbjct: 319 ETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIKLGDTYPLPVVDHKAA 461
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 104/441 (23%), Positives = 170/441 (38%), Gaps = 96/441 (21%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFE 60
T IG +L + D+ RQL++ G L I +G+ + L ++L T +C+
Sbjct: 39 TFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTLEEILSLIKQLGITAVYWNICY- 97
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D E ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 98 -DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A + S
Sbjct: 154 QVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 214 SKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMYHYLINKSNEKQCSLFEQQ 267
Query: 226 FN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQT 282
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+ G+T
Sbjct: 268 VNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQKGET 320
Query: 283 GYPFIDA---------VMRQLRRLLDCTYCV----------------------------- 304
GYPFIDA M R+ ++ V
Sbjct: 321 GYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMG 380
Query: 305 ------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQ 346
P+ G + D DG YI+++VPELR P +YI++PW+AP +
Sbjct: 381 WQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHIL 440
Query: 347 EKANCIISKDYPERIVNHVQA 367
+KAN + YP +V+H A
Sbjct: 441 QKANIKLGDTYPLPVVDHKAA 461
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 114/457 (24%), Positives = 187/457 (40%), Gaps = 103/457 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEG----VKPYQSFPTGSHPPRYQP--CKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTM 114
+ V+ + P + + TL + DL L P+ +FR
Sbjct: 104 EVTAEELAVEKAVNKALSIIPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFR------- 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLG----------------GETEAL 157
+ ++R + T P P++ K P++D+G+ P+++ LG GE
Sbjct: 157 -KQVERHWEIRTTYPSPKKLTKLPKIDWGNLPILKDLGLTELILDQGGVLSFQGGEIAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L FGCLS R Y + + T
Sbjct: 216 SRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + +T +L+WR++F + + + + LN+PWL + N W
Sbjct: 272 -RVKNDSTYWLTFELLWRDFFRFICSKHGNKIFYKSGLQELNLPWLEDWQR-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCVC 305
G+TGYP +DA MR+L L Y VC
Sbjct: 326 CEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G + DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIRKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLEN-KQYLKK 377
L Q++ I+ +YP IV+ Q+ N K YL K
Sbjct: 445 SLEEQKRYGVILGVNYPRPIVDFFQSIKHNEKIYLAK 481
>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 106/430 (24%), Positives = 164/430 (38%), Gaps = 120/430 (27%)
Query: 14 RFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---------EQDCE 64
RFL+ECL DLD LK +G +L+++ G ++ +K +E T++ + E+D E
Sbjct: 56 RFLIECLRDLDEGLKKYGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERDEE 115
Query: 65 GVKPYQSFPTGS-----HPPRYQPCKTLLNF----RDLSGL---------PPRPKEDIDF 106
K + H Q N DLS P P +
Sbjct: 116 ITKVVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTA 175
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQ 166
+H G+ + ++ L V H+ P P+ R GGE +AL L +++
Sbjct: 176 KHFKLGSKKIIIFKKSILAFGVWG----HQAPR---SLPIYR--GGERQALKVLQAKIND 226
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH- 225
+G NQ T SA +GC+S R HF E P S
Sbjct: 227 PTLFTLNGF---NQGVKTKLPHTTYLSAYQNYGCISTR--------HFWKAAEKLPESKT 275
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP-ESH----------------- 267
+ GQ+++RE+FY ++ + +M N IC I W E H
Sbjct: 276 IMLRGQIMYREFFYVAASQVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAV 335
Query: 268 ----------------------PNKEKYLNAWKNGQ----------------------TG 283
N + +LN W++GQ TG
Sbjct: 336 MRQLVTEGFIHHLNRWAVASFLTNGQLWLN-WEHGQEMFEEHQIDGDYAMNAGCWMWCTG 394
Query: 284 YPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
F+D++ + LD PV F RR DP+G + ++Y PEL+ P++Y++ PW+AP+
Sbjct: 395 SAFMDSISE---KTLD------PVKFARRWDPEGHFTRKYCPELKNMPLKYLFSPWEAPV 445
Query: 344 GVQEKANCII 353
VQ A I
Sbjct: 446 NVQRYAQFFI 455
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 182/452 (40%), Gaps = 102/452 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L++ GG L I +G P + +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQ 103
Query: 62 DCEG----VKPYQSFPTGSHPPRYQP--CKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTM 114
+ V+ + P + + TL + DL L P+ +FR
Sbjct: 104 EVTAEELAVEKAVNQALSGFPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFR------- 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEAL 157
+ ++R + T P P++ K P++DFG+ ++ + GGE
Sbjct: 157 -KQVERHWEIRTTYPTPKKLTKLPKIDFGNLPSLNDLGLTELILDWRGVLSFQGGEMAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L FGCLS R Y + + T
Sbjct: 216 SRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + + +L+WR++F + + + + L +PWL + N W
Sbjct: 272 -RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELYLPWLEDWER-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCVC 305
G+TGYP +DA MR+L L Y VC
Sbjct: 326 CEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWSMGAEWFESLLVDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G R DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIPKQSRDYDPKGDYLRHWLPELALIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
Q++ I+ +YP IV+ Q+ N++
Sbjct: 445 SPEEQKRYGVILGVNYPRAIVDFFQSIKHNEK 476
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 168/443 (37%), Gaps = 92/443 (20%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C++ D ++ Q + CK + L + K++ +++ F
Sbjct: 95 ICYDPD--RLQSNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYN 149
Query: 117 SLQREV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLN 161
+ Q++V S Q++ + H P + + + W E A
Sbjct: 150 AFQKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCK 209
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 210 KFFSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMYHYLINKSNEKQCSL 263
Query: 222 PPSHFN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
N QLIWRE+ Y + H P+ N N PW E E+ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLRVWQKG 318
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYPFIDA M R+ ++ V
Sbjct: 319 KTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D +G YI+R+VPELR P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIKLGDTYPLPVVDHKAA 461
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/446 (23%), Positives = 168/446 (37%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLRHAIMDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G +Q + P L FG +SV+ + H N E R
Sbjct: 211 FFSSKLASYSEGRDFPDQNVHSMLAP------YLSFGQISVKLMF---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N N PW E E+ L+ W
Sbjct: 261 CSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKE-----EELLSVW 315
Query: 278 KNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------ 304
+ G+TGYPFIDA M R+ ++ V
Sbjct: 316 QKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+R+VPEL P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELSDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +KAN + YP IV+H A
Sbjct: 436 PAHILQKANIKLGDTYPYPIVDHKAA 461
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 172/445 (38%), Gaps = 96/445 (21%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L ++L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNILEEILSLIKQLGITAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C+ D E ++ Q + CK + L + K++ +++ F
Sbjct: 95 ICY--DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYN 149
Query: 117 SLQREV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLN 161
+ Q++V S Q++ + H P + + + W E A
Sbjct: 150 AFQKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFK 209
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 210 KFFSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKVMYHYLINKSNEKQCSL 263
Query: 222 PPSHFN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQ 316
Query: 279 NGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIAN 376
Query: 305 ----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAP 436
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 437 EHILQKANIKLGDTYPLPVVDHKAA 461
>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
Length = 496
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 169/459 (36%), Gaps = 107/459 (23%)
Query: 12 RFRFLLECLADLDRQLKSHGGQ----LFIVQGSPISIFQKLKRELNFTKL-CFEQDCEGV 66
R F+ + LA+LD L+ G+ L +G P I L R+L + C + D
Sbjct: 54 RVEFICQSLAELDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAA 113
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRD----------LSGLPP----RPKEDIDFRHVT-F 111
+ S + Q LL F+D L P P ++ R +T F
Sbjct: 114 LARDAQVARSLKSQGQ---LLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPF 170
Query: 112 GTMSESLQREVSL---------FQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNE 162
+ +R+++ +T+P P+ G L + G L
Sbjct: 171 YLSAYPSERDLASKLADLPDTERRTIPSAADLGFAPDTLAGLRLPTGVSGARRLLADFLP 230
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD--HFNTIHEG 220
RL Q Y + + P L GP + S L+FG +S+R H+ H
Sbjct: 231 RLPQ---------YKAARDFPALKGP-SYLSVHLRFGTVSIRELARLAHEAAHHEDWSAA 280
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
+LIWR++++ + AH PY + P I W E+ + AW G
Sbjct: 281 AREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEW--ETGAEADALFAAWCEG 338
Query: 281 QTGYPFIDAVMRQLR---------RLLDCTYCV--------------------------- 304
+TGYP +DA MRQL R++ ++ V
Sbjct: 339 RTGYPLVDAAMRQLNTSGYMHNRLRMVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANN 398
Query: 305 ----------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PL 343
C PV + DP+G +I RYVPEL P + + PW A PL
Sbjct: 399 GGWQWAASTGCDAQPWFRIFNPVTQSEKFDPEGKFIVRYVPELTPLPAKLRHAPWLAKPL 458
Query: 344 GVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKEK 379
+ E A + +DYP +V+H A +L LKKE
Sbjct: 459 ELAE-AGIALGRDYPLPVVDHAAAREKTLARYGILKKES 496
>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
Length = 529
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 121/300 (40%), Gaps = 71/300 (23%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GGE+ L +L L+++ + S P++ S LKFGC+S R F
Sbjct: 215 GGESAGLARLEAALARDGGKWARAFEKPKTKSTKFDVDPSTTVLSPYLKFGCVSARLFRA 274
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL-PESH 267
L D + +PP+ ++ GQL +RE Y + + +P+C +IPW P +
Sbjct: 275 RLADVYAGGSHAQPPT--SLLGQLYFREMAYANALKHGAAFAASPSPVCADIPWDDPATD 332
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------------------- 294
L AW+ G+TGYPF+DA MRQL
Sbjct: 333 AAAAARLRAWEAGETGYPFVDAAMRQLRETGWIHHLARHAVACFLTRGDLWLPWTEGARV 392
Query: 295 --RRLLDCTYCVCPVN-------------FGRRLDP--------------DGIYIKRYVP 325
R LLD + V N F R P G Y+ R+VP
Sbjct: 393 FDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVYSPVPNHKQSSLNVDDAAGAYVDRFVP 452
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN----KQYLKKEKAN 381
ELR+ P +Y Y PW AP V A ++ YP +V+H S +N K+ ++ +AN
Sbjct: 453 ELRKLPAKYKYAPWTAPAAVLAAAGVVLGDTYPRPLVDHKVQSKDNIARFKEAQQRNRAN 512
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
+G R+RFLLE LADLD L+ G +L +V+G + L
Sbjct: 48 VGAPRYRFLLESLADLDASLRKRGSRLCVVRGETEATLDGL 88
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/443 (22%), Positives = 172/443 (38%), Gaps = 92/443 (20%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTK 56
++ T IG +L + D+ RQL++ G L I +G+ +S+ ++L +
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGMTAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT---FGT 113
+C++ D ++ Q + CK + L + K++ +++ T
Sbjct: 95 ICYDPD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAF 151
Query: 114 MSESLQREVSLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNER 163
+ + + +S Q++ + H P + + + W E A +
Sbjct: 152 QKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKF 211
Query: 164 LSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 212 FSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSNEKQCSLFE 265
Query: 224 SHFN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+ G
Sbjct: 266 QQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYPFIDA M R+ ++ V
Sbjct: 319 ETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDIPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIKLGDTYPLPVVDHKAA 461
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/443 (23%), Positives = 170/443 (38%), Gaps = 92/443 (20%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT---FGT 113
+C+ D E ++ Q + CK + L + K++ +++ T
Sbjct: 95 ICY--DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAF 151
Query: 114 MSESLQREVSLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNER 163
+ + + +S Q++ + H P + + + W E A +
Sbjct: 152 QKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKF 211
Query: 164 LSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 212 FSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSNEKQCSLFE 265
Query: 224 SHFN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+ G
Sbjct: 266 QQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYPFIDA M R+ ++ V
Sbjct: 319 ETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIKLGDTYPLPVVDHKAA 461
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 165/447 (36%), Gaps = 105/447 (23%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL----C 58
PG IG +L L L LK+ G L + +G + L RE T + C
Sbjct: 59 PGAWAIGGAARWWLHHSLTALSHDLKALGAPLILRRGDSREVIDSLVREAGATAVYWNRC 118
Query: 59 FE----QDCEGVKP--------YQSFPTGS-HPPRYQPCKTLLNFRDLS---------GL 96
+E + E +K +SF + H P K+ FR S G
Sbjct: 119 YEPFARKRDEAIKATLKQDGIEARSFNSALLHEPWTVENKSGEPFRVYSAFWRACLAKGK 178
Query: 97 PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
P +P + T S + ++ +P + K E W GE A
Sbjct: 179 PDKPLPAPE----TLVAASAPASDSIGDWKLLPTKPNWAKRFES-------AWTPGENGA 227
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
+L L + + +K+ + PD+ + S L FG + R+ + A
Sbjct: 228 QERLTGFLDEAVNRYKA-----ERDRPDIEAT-SRLSPHLHFGEIGPRQIWHATRAAM-A 280
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
H+ S ++ WRE+ + + HN + P + PW H N +K L A
Sbjct: 281 AHDLNEASAEKFLSEVGWREFSHHLLYHNDALPEHPLRPEFADFPW----HEN-DKALTA 335
Query: 277 WKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------------------- 304
W+ G TGYP +DA MR+L R++ ++ V
Sbjct: 336 WQRGLTGYPIVDAGMRELWATGWMHNRVRMIVASFLVKDLLIPWQEGEAWFWDTLVDADL 395
Query: 305 ------------C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
C PV G + DP+G Y++R+VPEL + P +I++PW
Sbjct: 396 ANNAASWQWVAGCGADAAPYFRIFNPVLQGEKFDPEGAYVRRWVPELAKMPASHIHKPWL 455
Query: 341 APLGVQEKANCIISKDYPERIVNHVQA 367
AP V +A + K YP IV+H A
Sbjct: 456 APDDVMRQAGVTLGKSYPNPIVDHGTA 482
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 172/445 (38%), Gaps = 96/445 (21%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L ++L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNILEEILSLIKQLGITAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C+ D E ++ Q + CK + L + K++ +++ F
Sbjct: 95 ICY--DPERLQFNQKVKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYN 149
Query: 117 SLQREV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLN 161
+ Q++V S Q++ + H P + + + W E A
Sbjct: 150 AFQKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFK 209
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 210 KFFSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKVMYHYLINKSNEKQCSL 263
Query: 222 PPSHFN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQ 316
Query: 279 NGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIAN 376
Query: 305 ----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAP 436
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 437 EHILQKANIKLGDTYPLPVVDHKAA 461
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/441 (23%), Positives = 169/441 (38%), Gaps = 96/441 (21%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFE 60
T IG +L + D+ RQL++ G L I +G+ + L +L T +C+
Sbjct: 39 TFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWNICY- 97
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D E ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 98 -DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A + S
Sbjct: 154 QVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 214 SKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSNEKQCSLFEQQ 267
Query: 226 FN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQT 282
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+ G+T
Sbjct: 268 VNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQKGET 320
Query: 283 GYPFIDA---------VMRQLRRLLDCTYCV----------------------------- 304
GYPFIDA M R+ ++ V
Sbjct: 321 GYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMG 380
Query: 305 ------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQ 346
P+ G + D DG YI+++VPELR P +YI++PW+AP +
Sbjct: 381 WQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHIL 440
Query: 347 EKANCIISKDYPERIVNHVQA 367
+KAN + YP +V+H A
Sbjct: 441 QKANIKLGDTYPLPVVDHKAA 461
>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
Length = 504
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 116/291 (39%), Gaps = 68/291 (23%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
RW+ GET AL L + L + GVY + + PD G T S L FG + R+ +
Sbjct: 222 RWVPGETAALSHLADFLDGPV-----GVYATERDRPDRHGTST-LSPHLAFGEIGPRQVW 275
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
A E F + ++ WRE+ Y + H P + +P + PW ++
Sbjct: 276 HAARHAAEARPELAAGIDFFLR-EVGWREFQYHLLHHAPELPERPLDPRFADFPWREDA- 333
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----CPVNFGRR-- 312
L AW+ G+TGYP +DA MRQL R++ ++ V P G R
Sbjct: 334 ----AGLQAWRRGRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVKDLLLPWQEGERWF 389
Query: 313 -----------------------------------------LDPDGIYIKRYVPELRQFP 331
DPDG Y++RYVPEL + P
Sbjct: 390 WDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFDPDGDYVRRYVPELDRLP 449
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382
++I++PW AP + +A + DYP I++H A + KA
Sbjct: 450 PRWIHQPWTAPTEILRQAGIRLGADYPRPILDHGAARDRALALYNERKAKA 500
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 113/457 (24%), Positives = 186/457 (40%), Gaps = 103/457 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEG----VKPYQSFPTGSHPPRYQP--CKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTM 114
+ V+ + P + + TL + DL L P+ +FR
Sbjct: 104 EVTAEELAVEKAVNKALSIIPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFR------- 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLG----------------GETEAL 157
+ ++R + T P P++ K P++D+G+ P+++ LG GE
Sbjct: 157 -KQVERHWEIRTTYPSPKKLTKLPKIDWGNLPILKDLGLTELILDQGGVLSFQGGEVAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L FGCLS R Y + + T
Sbjct: 216 SRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + + +L+WR++F + + + + LN+PWL + N W
Sbjct: 272 -RVKNDSTYWLIFELLWRDFFRFIGSKHGNKIFYKSGLQELNLPWLEDWQR-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCVC 305
G+TGYP +DA MR+L L Y VC
Sbjct: 326 CEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G + DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLEN-KQYLKK 377
L Q++ I+ +YP IV+ Q+ N K YL K
Sbjct: 445 SLEEQKRYGVILGVNYPRPIVDFFQSIKHNEKIYLAK 481
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 173/451 (38%), Gaps = 116/451 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFE 60
T IG +L + D+ RQL++ G L I +G+ + L ++L T +C+
Sbjct: 39 TFSIGSASKWWLHHAIIDVQRQLEAVGSTLIIRKGNILEEILSLIKQLGITAVYWNICY- 97
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D E ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 98 -DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEALI 158
Q VPKP K + G+ P IRW E A
Sbjct: 154 -----QIVPKP--ISKVQRIKGGNSLPASLSVSELHLLPTIRWTTHMESIWDPTEEGAYK 206
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN--- 215
+ S ++ S+ G N+ + + P L FG +SV+ Y L D
Sbjct: 207 TCKKFFSSKLASYSEGRDFPNENAHSMLAP------YLSFGQISVKWMYHYLIDKSTERQ 260
Query: 216 -TIHEGRPPSHFNITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEK 272
++ E + S QLIWRE+ Y + H P+ Y + KN + PW E E+
Sbjct: 261 CSLFEKQVNSFIR---QLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EE 310
Query: 273 YLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 311 LLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLL 370
Query: 305 ----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
P+ G + D +G YI+++VPELR P +YI+
Sbjct: 371 DADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIH 430
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+PW+AP + +KAN + YP +V+H A
Sbjct: 431 KPWEAPEHILQKANIKLGHTYPLPVVDHKAA 461
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 64/205 (31%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
QLIWR++ Y + H P+ N W + N+E L AWKNG+TGYP +DA
Sbjct: 276 QLIWRDFAYQLLYHFPHTTTEPLNEKFKQFQW---ADGNEE--LQAWKNGKTGYPLVDAG 330
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MR+L R++ ++ V
Sbjct: 331 MRELWETGFMHNRVRMIAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSG 390
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
P+ + D +G YIK+++PEL+ P YI++PW+AP V EKAN ++
Sbjct: 391 ADAAPYFRIFNPITQSEKFDKEGEYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLN 450
Query: 355 KDYPERIVNHVQA---SLENKQYLK 376
K YP IV+H A +LE+ Q++K
Sbjct: 451 KTYPTPIVDHKAARERALEHYQHIK 475
>gi|187921432|ref|YP_001890464.1| deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
Length = 499
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/447 (22%), Positives = 172/447 (38%), Gaps = 119/447 (26%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R +L L +LD L+++GG L ++ G P + KL EL + D E V +
Sbjct: 71 RIELILGALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANHDYEPVAIARD 130
Query: 72 FPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ + L F+D L+G +P F + +++
Sbjct: 131 --ETVRETLAEAGRQWLTFKDQVIFERDEVLTG-QNKP-------FTVFTPYKNAWLKQL 180
Query: 123 SLFQTVPKP-EQFHKY-----PEMDFGDPLIRWLGGETEALIKLN--------ERLSQEI 168
+ F P P E + K+ ++D P + LG L +L+ +RL +
Sbjct: 181 TAFDLKPYPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDF 240
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
+ + Y + P GP + S L+FG +S+R H+ +P +
Sbjct: 241 AT-RIDSYKDRRDFPAAKGP-SYLSIHLRFGTVSIRTLARLAHEM-----SLQPDGEGST 293
Query: 229 T--GQLIWREYFYTMSAHNPY----------YDQMEKNPICLNIPWLPESHPNKEKYLNA 276
T +LIWR++++ + AH+P YDQ+ W E P ++ A
Sbjct: 294 TWLSELIWRDFYFMILAHHPRLANGASFKEEYDQLR---------W--EQGPEADEAFAA 342
Query: 277 WKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------------------- 304
W +G+TGYP +DA M QL R++ ++ V
Sbjct: 343 WCDGRTGYPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDF 402
Query: 305 --------------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
C P+ + D +G +IKRY+P+L + P ++I+ PW
Sbjct: 403 SANNGGWQWAASTGCDAQPYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWL 462
Query: 341 APLGVQEKANCIISKDYPERIVNHVQA 367
A + ++ KDYP IV+H +A
Sbjct: 463 AGTERLAEFGVVLGKDYPAPIVDHAEA 489
>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
Length = 504
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 172/433 (39%), Gaps = 91/433 (21%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L + +LDR L+ GG L ++ G P+ KL +L + D E P
Sbjct: 72 RIEFILASVEELDRSLEEGGGALIVLHGDPVDAIPKLAAQLPVDAVFTNHDYE---PSAI 128
Query: 72 FPTGSHPPRYQP-CKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS---ESLQREVSLFQT 127
+ R + + LL F+D E ++ + F + + ++++ F
Sbjct: 129 ERDETVADRLRADGRRLLTFKDQVIF--ERDELLNGQRKPFAVFTPYKNAWLKQLTPFDL 186
Query: 128 VPKPEQFHKYP------EMDFGDPLIRWLG------GETEALIKLNERLSQEIESFKSGV 175
P P + + +D P + +G ETE ++ ++ +E F + +
Sbjct: 187 KPYPVERYSQSLARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQAR-LEDFLTRI 245
Query: 176 --YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQ 231
Y + P G + S L+FG +S+R H+ RP T +
Sbjct: 246 DSYAERRDLPAARGT-SHLSVHLRFGTVSIRTLARLAHEM-----SLRPGGQGAATWLSE 299
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLN-IPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
LIWR++++ + AH+P+ + E + + W E+ + + AW +G+TGYP +DA
Sbjct: 300 LIWRDFYFMILAHHPHIAKRESFKREFDALRW--ETGKDADALFAAWCDGRTGYPLVDAA 357
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
M QL R++ ++ V
Sbjct: 358 MLQLNRTGFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTG 417
Query: 305 C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
C PV + D G++IKR++PEL + P ++I+ PW+A E ++
Sbjct: 418 CDAQPWFRIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAPWQADPDDLEDWGVVLG 477
Query: 355 KDYPERIVNHVQA 367
KDYP +V H +A
Sbjct: 478 KDYPHPVVEHAKA 490
>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
Length = 476
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G+ +S+ ++L + +C+
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLEALGSTLIIRKGNTQEEILSLIEQLGITAVYWNICY- 97
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D E ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 98 -DPERLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKL 160
+V +PKP + H P + + + W E A
Sbjct: 154 QV-----IPKPISKVQRIKGGNSLPASLSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTC 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G N+ + + P L FG +SVR W H N E
Sbjct: 209 KKFFSSKLASYSEGRDFPNENAHSMLAP------YLSFGQISVR---WMYHYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
R S F + Q IWRE+ Y + H P+ N + PW N+E+ L
Sbjct: 259 RQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEHFPW-----NNEEELLT 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D DG YI+++VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + ++AN + YP IV+H A
Sbjct: 434 EAPEHILQEANIQLGHTYPLPIVDHKAA 461
>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
Length = 486
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 83/311 (26%)
Query: 128 VPKPEQ-FHKYPEMDFGDPLIRWLGGETEAL----IKLNERLSQEIESFKSGVYLSNQVS 182
+P P+ F+ Y + D L W G ++A + + LS+ K ++L N ++
Sbjct: 165 LPAPDHIFNGYNQPINSDDLSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLA 224
Query: 183 P-----DLTGPPTSQSAA---LKFGCLSVRRFYWALHDHFNTIHEGRPPS----HFNITG 230
DL P+ S L++G +S ++ + ++ +T+ R P+
Sbjct: 225 GYNNNRDLIASPSFSSQLSPYLRWGQISAKKIF---NEVIHTME--RDPTIQQDGNTFLK 279
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
++ WRE+ Y + H+P ++ N + P + N L W+ G TG+P IDA
Sbjct: 280 EIGWREFSYYLLYHHPSMQEVPLNKRFQDFP-----YENNLSLLEKWQKGTTGFPIIDAG 334
Query: 291 MRQLR---------RLLDCTYCV-----------------------------------C- 305
MRQL R++ ++ + C
Sbjct: 335 MRQLWLEGWMPNRLRMIVASFLIKDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCG 394
Query: 306 -----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
P+ G++ D +G YI++YVPEL+ P +YI++PW+ P+ +QE+ N II
Sbjct: 395 TDASPYFRIFNPITQGKKFDSEGKYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIG 454
Query: 355 KDYPERIVNHV 365
KDYP IV+H
Sbjct: 455 KDYPHPIVDHT 465
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/441 (23%), Positives = 169/441 (38%), Gaps = 96/441 (21%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFE 60
T IG +L + D+ RQL++ G L I +G+ + L +L T +C+
Sbjct: 39 TFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWNICY- 97
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D E ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 98 -DPERLQFNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A + S
Sbjct: 154 QVISKPISKVQSIKWGSSLPASLSVSELHLLPTILWTSHMESIWEPTEEGAYKTFKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 214 SKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSNEKQCSLFEQQ 267
Query: 226 FN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQT 282
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L W+ G+T
Sbjct: 268 VNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLRVWQKGET 320
Query: 283 GYPFIDA---------VMRQLRRLLDCTYCV----------------------------- 304
GYPFIDA M R+ ++ V
Sbjct: 321 GYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMG 380
Query: 305 ------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQ 346
P+ G + D DG YI+++VPELR P +YI++PW+AP +
Sbjct: 381 WQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHIL 440
Query: 347 EKANCIISKDYPERIVNHVQA 367
+KAN + YP +V+H A
Sbjct: 441 QKANIKLGDTYPLPVVDHKAA 461
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 176/460 (38%), Gaps = 118/460 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE + DL + L+ G L I QG P I +L ++L + F +
Sbjct: 50 FPKT---GNFRGQFLLESVTDLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHE 106
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTL-LNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
+ S T + K L + F+ G +D+ F + S ++
Sbjct: 107 EV------TSEETDIENTVEKALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRK 160
Query: 121 EVSLFQTVP----KPEQFHKYPEMDFGD-----------------PLIRWLGGETEALIK 159
+V TV P + P+++ G+ ++ + GGETE + +
Sbjct: 161 KVEKNSTVNPILISPRKLRSLPDIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQR 220
Query: 160 LNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
LN + +E + G S++ SP L GCLS R Y
Sbjct: 221 LNNYFWERNCLKEYKETRNGMLGADYSSKFSPWLAN-----------GCLSPRYIY---- 265
Query: 212 DHFNTIHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ E R S + + +L+WR+YF +SA + + ++IPW +
Sbjct: 266 EEVQKYEEKRIKNNSTYWLIFELLWRDYFRFISAKHGNKIFYQSGLQGVDIPW----KED 321
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLRRL-------------------------------- 297
+E++ W+ G TGYP +D MR+L
Sbjct: 322 QERF-KLWQEGNTGYPLVDGNMRELAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFES 380
Query: 298 LDCTYCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQ 333
L Y VC N+G + DP G YIK ++PEL+ P Q
Sbjct: 381 LLIDYDVCS-NYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGEYIKHWLPELKMIPGQ 439
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
I+EPWK Q++ N I +YP +V+ ++ N++
Sbjct: 440 KIHEPWKLSQEEQKRYNVRIGVNYPRPVVDFFKSVKANEK 479
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QL++ G L I +G+ L +LN T + + D
Sbjct: 39 TFSIGSASKWWLHHAIIDVQKQLEALGSTLIIRKGNTQEEILSLIEQLNITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKIVLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISKVQRIKGGSSLPASLSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
++ S+ G N+ + + P L FG +SVR W H N E R
Sbjct: 211 FFFSKLASYSEGRDFPNENAHSMLAP------YLSFGQISVR---WMYHYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
S F + QLIWRE+ Y + H P+ Y + KN + PW E E+ L
Sbjct: 261 CSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLT 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D DG YI+++VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V+H A
Sbjct: 434 EAPEHILQKANIKLGDTYPLPVVDHKAA 461
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 170/452 (37%), Gaps = 118/452 (26%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QLK+ G I +G +S+ ++L + +C+E
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGATFIIRKGKTQEEILSLIEQLDITAVYWNICYE 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEALI 158
Q +PKP K + +G P I W E A
Sbjct: 154 -----QAIPKPTS--KVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWNPTEEGAYK 206
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+ S ++ + G NQ + P L FG +SV+ + H N
Sbjct: 207 TFKKFFSSKLTFYSEGRDFPNQNVHSMLAP------YLSFGQISVKLMF---HYLINKST 257
Query: 219 EGRPPSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKE 271
E R S F + QLIWRE+ Y + H P+ Y + KN + PW E E
Sbjct: 258 E-RQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWDKE-----E 309
Query: 272 KYLNAWKNGQTGYPFIDAVMRQ----------------------------------LRRL 297
+ L W+ G+TGYPFIDA MR+ + L
Sbjct: 310 ELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTL 369
Query: 298 LDCTYC----------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LD P+ G + D DG YI+++VPELR P +YI
Sbjct: 370 LDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDIPNKYI 429
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++PW+AP + +KAN + YP +V+H A
Sbjct: 430 HKPWEAPEPILQKANIQLGDTYPLPVVDHKAA 461
>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 512
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 102/258 (39%), Gaps = 66/258 (25%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHD--HFNTIHEGRPPSHFNITGQLIWREYFYT 240
P L GP + S L+FG +S+R H+ H +LIWR++++
Sbjct: 258 PALKGP-SYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQ 316
Query: 241 MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR----- 295
+ AH PY + P I W E+ + AW G+TGYP +DA MRQL
Sbjct: 317 ILAHQPYVVERSFKPAYDAIEW--ETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSGYM 374
Query: 296 ----RLLDCTYCV-------------------------------------C--------- 305
R++ ++ V C
Sbjct: 375 HNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIF 434
Query: 306 -PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVN 363
PV + DPDG +I RYVPEL P + + PW A PL + E A + +DYP +V+
Sbjct: 435 NPVTQSEKFDPDGKFIVRYVPELTPLPAKLRHAPWLAKPLELAE-AGITLGRDYPLPVVD 493
Query: 364 HVQA---SLENKQYLKKE 378
H A +L LKKE
Sbjct: 494 HAAAREKTLARYGILKKE 511
>gi|379707822|ref|YP_005263027.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
gi|374845321|emb|CCF62385.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
Length = 442
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 146/402 (36%), Gaps = 101/402 (25%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
NR RFLL LA+LD +L G L + +G ++ +L RE T + D V Y
Sbjct: 52 NRIRFLLAALAELDDELHRRGSHLVLRRGDTVTETARLAREAGATDVHLAAD---VSAYS 108
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPP---RPKEDIDFRHVTFGTMSESLQR--EVSLF 125
+ C+ L+ ++ + P RP D F + +R E
Sbjct: 109 ARRARRLRAELTECRLHLHGETITAVDPAALRPSGGGDH----FAVFTPYFRRWTETHRR 164
Query: 126 QTVPKPEQFHKYP--------EMDF----GDPLIRWLGGETEALIKLNERLSQEIESFKS 173
+P P + +P D G P + +GGE+ L + +S I +
Sbjct: 165 DPIPAPRKLGTFPVPTDPLPDAADLCDGPGSPHLS-VGGESTGRKLLRQWVSHGIHDYDR 223
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI 233
LS+ + D T + S L FGCLS + A+ H QL
Sbjct: 224 ---LSDALDADAT---SHLSPYLHFGCLSPAQVLAAVDPDSGGGHA--------FARQLA 269
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WR++ + + A P + P I W + H + AW+ G+TG P +DA MRQ
Sbjct: 270 WRDFHHQVLAARPDAAWSDYRP--RRITWRTDPH-----AVEAWQQGRTGLPIVDAGMRQ 322
Query: 294 LR---------RLLDCTY------------------------------------------ 302
LR RL+ ++
Sbjct: 323 LRAEGWMPGRARLIAASFLTKSLRIDWRIGARHFLHWLVDGDLANNQLNWQWAAGTGTDT 382
Query: 303 ----CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ P+ R DP G Y++R++PEL + P I+ PW+
Sbjct: 383 RPNRVLNPLRQAARFDPGGDYVRRWIPELAELPGAAIHRPWR 424
>gi|430807586|ref|ZP_19434701.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
gi|429500109|gb|EKZ98493.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
Length = 518
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/463 (22%), Positives = 165/463 (35%), Gaps = 109/463 (23%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L L R L+ GG L ++ G+ +L EL + D E +
Sbjct: 77 RVEFILRTLEPLRRALEDSGGGLIVLDGTARQAIPRLAAELEVEAVFANHDYEPAANARD 136
Query: 72 FPTGSHPPRYQPCKTLLNFRD----------------LSGLPP------RPKEDIDFRHV 109
+ LL F+D S P R D R
Sbjct: 137 --DAVRRTLAADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPY 194
Query: 110 TFGTMSESLQREVSLFQTVPKPEQFH-KYPEM-DFGDPLIRWLG-----GETEALIKLNE 162
G E+L P P+++ ++P + D G G G A +E
Sbjct: 195 PIGKYLEAL---------APVPQRYRGQWPTLADLGFTATNLAGIAMPTGSDGAHALFDE 245
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
L + G Y + P + GP + S L+FG +S+R A HD + G
Sbjct: 246 FLP------RIGDYGRRRDFPAVRGP-SYLSVHLRFGTISIRTLARAAHDAM--LRGGAA 296
Query: 223 PSHFNI-TGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAWKNG 280
+ +LIWR++++ + H+P + + +P + W+ + ++Y AW +
Sbjct: 297 SEGAAVWLSELIWRDFYFMILHHHPRVAEGKSFHPEYDALRWIAPA--TGDRYFAAWCDA 354
Query: 281 QTGYPFIDAVMRQLR---------RLLDCTYCV--------------------------- 304
QTGYP IDA M Q+R R++ ++ V
Sbjct: 355 QTGYPLIDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANN 414
Query: 305 ----------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
C PV + DP G +I++Y+P L P +Y++ PW AP
Sbjct: 415 GGWQWAASTGCDAQPYFRIFNPVTQSEKFDPQGQFIRKYLPMLAALPDRYVHAPWTAPEE 474
Query: 345 VQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKD 387
V A + +DYP IV H A E + K N D
Sbjct: 475 VLRAAGVKLGEDYPRPIVQHDVARKETLERYGVVKEKTRGNGD 517
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 113/457 (24%), Positives = 186/457 (40%), Gaps = 103/457 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEG----VKPYQSFPTGSHPPRYQP--CKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTM 114
+ V+ + P + + TL + DL L P+ +FR
Sbjct: 104 EVTAEELAVEKAVNKALSIIPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFR------- 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLG----------------GETEAL 157
+ ++R + T P P++ K P++D+G+ P+++ LG GE
Sbjct: 157 -KQVERHWEIRTTYPSPKKLTKLPKIDWGNLPILKDLGLTELILDQGGVLSFQGGEIAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L FGCLS R Y + + T
Sbjct: 216 SRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + + +L+WR++F + + + + LN+PWL + N W
Sbjct: 272 -RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELNLPWLEDWQR-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCVC 305
G+TGYP +DA MR+L L Y VC
Sbjct: 326 CEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G + DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLEN-KQYLKK 377
L Q++ I+ +YP IV+ Q+ N K YL K
Sbjct: 445 SLEEQKRYGVILGVNYPRPIVDFFQSIKHNEKIYLAK 481
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 171/448 (38%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QL++ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLEALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G NQ + + P L FG +SV+ Y H N E R
Sbjct: 211 FFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
S F + QLIWRE+ Y + H P+ Y + KN + PW E E+ L
Sbjct: 261 CSFFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+++VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V H A
Sbjct: 434 EAPEHILQKANIKLGHTYPLPVVEHKAA 461
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/468 (23%), Positives = 184/468 (39%), Gaps = 125/468 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ GG L I +G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK----------EDIDFRH--- 108
+ + + +N + LSG+P + K +D+ F
Sbjct: 104 EVTAEE--------------LAVEKAVN-KALSGVPVQIKTFWTATLYHPDDLPFTVNQL 148
Query: 109 -VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWL 150
F + ++R + T P++ K P++D+G+ ++ +
Sbjct: 149 PELFTNFRKQIERHWEIRTTYASPKKLTKLPKIDWGNLPSLNDLGLTELILDRGGVLSFQ 208
Query: 151 GGETEALIKLNERL--SQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRF 206
GGE ++ E + S ++++K + ++ G S SA L GCLS R
Sbjct: 209 GGEMAGKSRVKEYIWDSDSLKTYK-------ETRNEMLGTNYSSKFSAWLSLGCLSPRYI 261
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y + + T + S + + +L+WR++F + + + + LN+PWL +
Sbjct: 262 YEEVQKYEQT--RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELNLPWLEDW 319
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRRL----------------------------- 297
N W G+TGYP +DA MR+L
Sbjct: 320 QR-----FNLWCEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEW 374
Query: 298 ---LDCTYCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQF 330
L Y VC N+G + DP G Y++ ++PEL
Sbjct: 375 FESLLVDYDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELALI 433
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN-KQYLKK 377
I+EP+K L Q++ I+ +YP IV+ Q+ N K YL K
Sbjct: 434 KGDKIHEPYKLSLEEQKRYGVILGVNYPRPIVDFFQSIKHNEKIYLAK 481
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/440 (23%), Positives = 171/440 (38%), Gaps = 114/440 (25%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
+L + D+ +QL++ G L I +G + +S+ +KL + +C++ D +K Q
Sbjct: 49 WLHHAVIDVKKQLEALGSTLIIRKGRTEEAILSLIEKLDITAVYWNICYDPD--RLKSNQ 106
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPK 130
+ CK + L + K++ +++ F + Q++V +PK
Sbjct: 107 KMKMMLED-KGIICKEFNSHLLLESWIIKKKDNTEYK--VFTPFYNAFQKQV-----IPK 158
Query: 131 P-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNERLSQEIES 170
P + H P + + + W E A + S ++ S
Sbjct: 159 PVSKVQSIKWGSSLPASLSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLAS 218
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF---- 226
+ G NQ + + P L FG +SV+ Y H N E R S F
Sbjct: 219 YSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQCSLFEKQV 268
Query: 227 -NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+ QLIWRE+ Y + H P+ Y + KN + PW E E+ L W+ G+TG
Sbjct: 269 NSFIRQLIWREFSYYLLYHYPFAVYKPLNKN--FEHFPWNKE-----EELLRVWQKGETG 321
Query: 284 YPFIDA---------VMRQLRRLLDCTYCV------------------------------ 304
YPFIDA M R+ ++ V
Sbjct: 322 YPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNIMGW 381
Query: 305 -----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
P+ G + D +G YI+++VPELR P +YI++PW+AP + +
Sbjct: 382 QWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQ 441
Query: 348 KANCIISKDYPERIVNHVQA 367
KAN + YP +V+H A
Sbjct: 442 KANIKLGNAYPLPVVDHKAA 461
>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 499
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 171/454 (37%), Gaps = 116/454 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PGT R F+L L +LD L++ GG L ++ G P + KL +L + D
Sbjct: 63 PGT-QAQDRRVEFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHD 121
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGT 113
E + + +T L F+D L+G +P F
Sbjct: 122 YEPAAIERD--EAVRERLAETGRTFLTFKDQVIFERAELLTG-QKKP-------FTVFTP 171
Query: 114 MSESLQREVSLFQTVPKPEQFHKY------PEMDFGDPLIRWLGGETEALIKLN------ 161
+ ++++ F P P + + P +D P + LG L +L+
Sbjct: 172 YKNAWLKQLTSFDLKPYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMR 231
Query: 162 --ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
+RL + + + Y + P + GP + S L+FG +S+R H+ + +
Sbjct: 232 GAQRLLDDFLT-RLDSYAERRDFPAVKGP-SYLSVHLRFGTVSIRTLARLAHE-MSLQPD 288
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPY----------YDQMEKNPICLNIPWLPESHPN 269
GR + + +LIWR++++ + AH+P YD++ W E P
Sbjct: 289 GRGAATW--LSELIWRDFYFMILAHHPRLAGGASFKEEYDRLR---------W--EQGPE 335
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRL------- 313
+ AW G+TGYP IDA M QL R++ ++ V + RL
Sbjct: 336 ADAAFAAWCEGRTGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAE 395
Query: 314 ----------------------------------------DPDGIYIKRYVPELRQFPIQ 333
D DG +IKRY+P+L + P +
Sbjct: 396 QLNDYDFAANNGGWQWAASTGCDAQPYFRIFNPITQSEKFDADGRFIKRYLPQLGKLPAK 455
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+I+ PW A + + +YP IV+H QA
Sbjct: 456 WIHAPWLAGAQRLAEFGVALGDNYPAPIVDHAQA 489
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 169/450 (37%), Gaps = 112/450 (24%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCF 59
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C+
Sbjct: 38 ATFSIGSAAKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICY 97
Query: 60 EQD-CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESL 118
+ D + + + G + CK + L + K + +++ F +
Sbjct: 98 DPDRLQSNQKMKMMLEG----KGITCKEFNSHLLLEPWIIKKKNNTEYK--VFTPFYNAF 151
Query: 119 QREVSLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALI 158
Q++V +PKP + H P + + + W E A
Sbjct: 152 QKQV-----IPKPISRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDSTEEGAYK 206
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+ S ++ S+ G +Q + P L FG +SV+ + H N
Sbjct: 207 AFKKFFSSKLVSYSEGRDFPDQNVHSMLAP------YLSFGQISVKLMF---HYLINKST 257
Query: 219 EGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
E R S F + QLIWRE+ Y + H P+ N N PW E E+
Sbjct: 258 E-RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EEL 311
Query: 274 LNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 312 LRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLD 371
Query: 305 ---------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G + D +G YI+R+VPELR P +YI++
Sbjct: 372 ADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHK 431
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP + +KAN + YP IV+H A
Sbjct: 432 PWEAPKHILQKANIKLGDTYPFPIVDHKAA 461
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 181/452 (40%), Gaps = 102/452 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+S G L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVANLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEG----VKPYQSFPTGSHPPRYQP--CKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTM 114
+ V+ + P + + TL + DL L P+ +FR
Sbjct: 104 EVTAEELAVEKAVNKALSRVPAQIKTFWTATLYHPDDLPFTLNQLPELFTNFR------- 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEAL 157
+ ++R + T P P++ K P++D+G+ + + GGE
Sbjct: 157 -KQVERHWEIRTTYPSPKKLTKLPKIDWGNLPSLNDLGLTEPILDRRGFLSFQGGEMAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L FGCLS R Y + + T
Sbjct: 216 SRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + + +L+WR++F + + + + LN+PWL + N W
Sbjct: 272 -RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELNLPWLEDWQR-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCVC 305
G+TGYP +DA MR+L L Y VC
Sbjct: 326 CQGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWCMGAEWFESLLVDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G R DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIPKQSRDYDPKGDYLRHWLPELALIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
Q++ I+ +YP IV+ Q+ N++
Sbjct: 445 SPEEQKRYGVILGVNYPRPIVDFFQSIKHNEK 476
>gi|390569912|ref|ZP_10250187.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|420254982|ref|ZP_14757945.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
gi|389938145|gb|EIM99998.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|398047192|gb|EJL39755.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
Length = 504
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 95/434 (21%), Positives = 174/434 (40%), Gaps = 85/434 (19%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L +LDR LK GG L ++ G P +L +L + D E V +
Sbjct: 72 RIEFILASLEELDRSLKEGGGGLIVLHGDPHEEIPRLAAQLEAEAVFTNHDYEPVAIERD 131
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS---ESLQREVSLFQTV 128
+ LL F+D +E ++ + F + + ++++ F
Sbjct: 132 ESVAER--LRDDGRQLLTFKDQVIF--EREELLNGQGKPFAVFTPYKNAWLKKLTPFDLK 187
Query: 129 PKP-EQFHKY-----PEMDFGDPLIRWLG------GETEALIKLNERLSQEIESFKSGV- 175
P P E++ K ++D P + +G ET+ L ++ + +E F + +
Sbjct: 188 PYPVERYAKSLARPPRKLDHAWPTLGQMGFAPGKLAETKLLTGMSGAQTL-LEDFVTRID 246
Query: 176 -YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y + P G + S L+FG +S+R H+ + +G+ + + +LIW
Sbjct: 247 SYADRRDFPAARGT-SHLSVHLRFGTVSIRTLARLAHE-MSLQPDGQGAATW--LSELIW 302
Query: 235 REYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
R++++ + AH+P+ + P + W E+ + AW G+TGYP +DA M Q
Sbjct: 303 RDFYFMILAHHPHIAKRASFKPEFDTLRW--ETGKQADALFAAWCKGRTGYPLVDAAMLQ 360
Query: 294 LR---------RLLDCTYCVCPVNFGRR-------------------------------- 312
L R++ ++ + R
Sbjct: 361 LNQTGFMHNRLRMVTASFLAKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTGCDA 420
Query: 313 ---------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
DP G++IKR++PEL + P ++I+ PW+A + ++ KDY
Sbjct: 421 QPWFRIFNPVTQSEKFDPQGLFIKRFLPELEKVPAKWIHAPWQANPDDLKDWGVVLGKDY 480
Query: 358 PERIVNHVQASLEN 371
P+ +V+H +A E
Sbjct: 481 PQPVVDHAKARQET 494
>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
Length = 513
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 164/455 (36%), Gaps = 110/455 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L L R L GG L ++ +L EL+ + D E +
Sbjct: 78 RVEFILRSLEPLRRTLTDAGGGLIVLDDIARDAIPRLAAELDADAVFTNHDYEPAAKRRD 137
Query: 72 FPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
T + L F+D L+G +P F + R V
Sbjct: 138 --TAVRQALASDSRVLFTFKDQVIFEADELLTG-QGQP-------FSVFAPYKNAWLRAV 187
Query: 123 SLFQT------------VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL-----NERLS 165
F P P Q+ K P++ LG L ++ ++
Sbjct: 188 QPFDLRPYPVDQYLGALAPVPRQYQK------ASPMLHDLGFAASNLAEIAMPTGSDGAR 241
Query: 166 QEIESF--KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
+ F + G Y + P L GP + S L+FG +S+R A D + G
Sbjct: 242 ALFDEFIDRIGDYGYRRDFPSLRGP-SYLSVHLRFGTISIRTLARAALD--AVLRGGSES 298
Query: 224 SHFNI-TGQLIWREYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
+ + +LIWR++++ + H+P D P + W+ +KY AW + Q
Sbjct: 299 AGAAVWLSELIWRDFYFMILHHHPRVADGKSFRPEYDALQWVDSV--TGDKYFQAWCDAQ 356
Query: 282 TGYPFIDAVMRQLR---------RLLDCTYCV---------------------------- 304
TGYP +DA M Q+R R++ ++ V
Sbjct: 357 TGYPLVDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNG 416
Query: 305 ---------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
C PV + DP G +I++Y+P L Q P QYI+ PW AP+ V
Sbjct: 417 GWQWAASTGCDAQPYFRIFNPVKQSEKFDPQGRFIRKYLPVLAQMPDQYIHAPWTAPVNV 476
Query: 346 QEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
A + ++YP IV H + KQ L++ A
Sbjct: 477 LATAGVKLGENYPPPIVQH---EVARKQTLERYAA 508
>gi|440703964|ref|ZP_20884860.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
gi|440274432|gb|ELP62999.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
Length = 457
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 151/424 (35%), Gaps = 101/424 (23%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
NR FL +CL DLD L+ GG+L + G + ++ E++ ++ D G +
Sbjct: 49 NRLAFLADCLHDLDTGLRERGGRLVLRHGDLVREVCRVAAEVDADEVHMAADVSG---HA 105
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS--------ESLQREV 122
+ L+ D + P + F + L+ +
Sbjct: 106 RRREDRLRRALEADGVRLHVHDTVTVAVAPGAVVPANSDHFAVFTPYFRHWSQHPLREPL 165
Query: 123 SLFQTVPKPEQFHKYP-EMDFGDPLIR---WLGGETEALIKLNERLSQEIESFKSGVYLS 178
+TV P+ P G P + GGETE +L L + S++
Sbjct: 166 GAPRTVRVPDGVESDPLPSGSGLPGLSEGLAAGGETEGRARLAAWLRAGVASYE------ 219
Query: 179 NQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGR---PPSHFNITGQLIW 234
DL G TS+ S L FG LS +H R P QL W
Sbjct: 220 -DRHDDLAGDATSRLSPHLHFGTLSA----------VELVHRARRAGGPGADAFVRQLAW 268
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
R++ + A P + + W E ++ + AWK G+TGYP +DA MRQL
Sbjct: 269 RDFHRQVLAARPGSATADYR--TKHDRWRSERQARED--VEAWKEGRTGYPIVDAAMRQL 324
Query: 295 R---------RLLDCTY------------------------------------------- 302
R RLL ++
Sbjct: 325 RHEGWMHNRGRLLTASFLTKTLYVDWRVGARHFLDLLVDGDIANNQLNWQWMAGTGTDSR 384
Query: 303 ---CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
+ PV +R DPDG Y++R+VPELR ++EPWK L ++A DYP+
Sbjct: 385 PNRVLNPVTQSKRYDPDGAYVRRWVPELRSLAGPAVHEPWK--LRGLDRAAV----DYPD 438
Query: 360 RIVN 363
IV
Sbjct: 439 PIVG 442
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 182/459 (39%), Gaps = 116/459 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK----------EDIDFRH--- 108
+ + + +N + LSG+P + K +D+ F
Sbjct: 104 EVTAEE--------------LAVEKAVN-KALSGVPVQIKTFWTATLYHPDDLPFTLNQL 148
Query: 109 -VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWL 150
F + ++R + T P P++ K P+++ G+ ++ +
Sbjct: 149 PELFTNFRKQVERHWQIRATYPTPKKLTKLPKIELGNLPSLNDLGLTESILDRGGVLSFQ 208
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE ++ E + + +S K+ N++ T + SA L FGCLS R Y +
Sbjct: 209 GGEMAGKSRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEV 265
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ T + S + + +L+WR++F M + + L +PWL +
Sbjct: 266 QKYEQT--RVKNDSTYWLIFELLWRDFFRFMCRKHGNKIFYKSGLQELYLPWLEDWER-- 321
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQ------------------LRRLLDCTYC--------- 303
N W G+TGYP +DA MR+ L + L +C
Sbjct: 322 ---FNLWCEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLSKNLGIDWCMGAEWFESL 378
Query: 304 -----VCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQY 334
VC N+G + DP G Y++ ++PEL
Sbjct: 379 LIDYDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDK 437
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
I+EP+K Q++ I+ +YP IV+ Q+ N++
Sbjct: 438 IHEPYKLSPEEQKRYGVILGVNYPRPIVDFFQSIKHNEK 476
>gi|335346423|gb|AEH41599.1| cry1-like protein [Favia fragum]
Length = 120
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
C+CPV FGR+LDP+G Y+K+Y+P L+ FP +YI+ PW AP VQ+ A CII +DYP IV
Sbjct: 57 CLCPVGFGRKLDPNGDYVKKYLPVLKGFPAKYIHAPWTAPESVQKAARCIIGQDYPTPIV 116
Query: 363 NH 364
+H
Sbjct: 117 DH 118
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/443 (22%), Positives = 167/443 (37%), Gaps = 92/443 (20%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 35 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 94
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C++ D ++ Q + CK + L + K++ +++ F
Sbjct: 95 ICYDPD--RLQSNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYN 149
Query: 117 SLQREV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLN 161
+ Q++V S Q++ + H P + + + W E A
Sbjct: 150 AFQKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCK 209
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 210 KFFSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMYHYLINKSNEKQCSL 263
Query: 222 PPSHFN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
N Q IWRE+ Y + H P+ N PW N++K L W+ G
Sbjct: 264 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEYFPW-----NNEKKLLRVWQKG 318
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYPFIDA M R+ ++ V
Sbjct: 319 KTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIKLGDTYPLPVVDHKAA 461
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/444 (23%), Positives = 169/444 (38%), Gaps = 102/444 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQ 166
+V +PKP F + + +G+ P+I W E +
Sbjct: 154 QV-----IPKP--FSRVQSIKWGNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYK 206
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S +S D G A L FG +SV+ + H N E R S
Sbjct: 207 TFKKFFSSKLVSYSEGRDFPGQNVHSMLAPYLSFGQISVKLMF---HYLINKSTE-RQCS 262
Query: 225 HF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
F + QLIWRE+ Y + H P+ N N PW E E+ L W+
Sbjct: 263 LFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLRVWQK 317
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 318 GKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANN 377
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + D +G YI+R+VPELR P +YI++PW+AP
Sbjct: 378 TMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPE 437
Query: 344 GVQEKANCIISKDYPERIVNHVQA 367
+ +K+N + YP IV+H A
Sbjct: 438 HILQKSNIKLGDTYPFPIVDHKAA 461
>gi|418529913|ref|ZP_13095840.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
gi|371452969|gb|EHN65994.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
Length = 496
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 101/259 (38%), Gaps = 66/259 (25%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHD--HFNTIHEGRPPSHFNITGQLIWREYFYT 240
P L GP + S L+FG +S+R H+ H +LIWR++++
Sbjct: 242 PALKGP-SYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQ 300
Query: 241 MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR----- 295
+ AH PY + P I W E+ + AW G+TGYP +DA MRQL
Sbjct: 301 ILAHQPYVVERSFKPAYDAIEW--ETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSGYM 358
Query: 296 ----RLLDCTYCV-------------------------------------C--------- 305
R++ ++ V C
Sbjct: 359 HNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIF 418
Query: 306 -PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVN 363
PV + DPDG +I RYVPEL P + + PW A PL + E A + DYP +V+
Sbjct: 419 NPVTQSEKFDPDGKFIARYVPELTPLPAKLRHAPWLAKPLEMAE-AGIALGLDYPLPVVD 477
Query: 364 HVQA---SLENKQYLKKEK 379
H A +L LKKE
Sbjct: 478 HAAAREQTLARYGILKKES 496
>gi|422759394|ref|ZP_16813156.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 474
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 161/424 (37%), Gaps = 117/424 (27%)
Query: 26 QLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFEQDCEG------------------- 65
+LK G L+++ G I+ F++L ++L+ +T + F D G
Sbjct: 61 ELKERGIDLYVMHGDLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWFRAKKIN 120
Query: 66 VKPYQS-FPTGSHPPRYQPCKTLLNF----RDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
+ YQ + GS + Q + F R LP +D + ++ ++ Q
Sbjct: 121 IHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWLSL-KTPQA 179
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQ 180
+ L +T+ + F D + EA +LN + ++ + + ++
Sbjct: 180 TLELIETLK---------DTTFNDVMT-----VKEAKERLNHFVDNQLADYDTTRDFPSR 225
Query: 181 VSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQLIWREYF 238
P L+ G +S+R Y A+ P S +L WR+++
Sbjct: 226 CGTSFLSP------YLRLGMVSIRTVYQAVSQA--------PASSGQAVFLKELAWRDFY 271
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--- 295
+ + NP ++ ++ W + +P K AWK GQTGYP IDA M+QLR
Sbjct: 272 HMVYVANPNQKKLAIQEAFRHLEW--DENPATFK---AWKEGQTGYPIIDAAMKQLRATG 326
Query: 296 ------RLLDCTYCVCPVNFGRRL------------------------------------ 313
R++ ++ + RL
Sbjct: 327 WMHNRLRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFR 386
Query: 314 -----------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
DPDG +I+ Y+P L P +Y+YEPWK P +QE CII KDYP +V
Sbjct: 387 IFNPVTQGKRFDPDGDFIRSYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLV 446
Query: 363 NHVQ 366
+H +
Sbjct: 447 DHAE 450
>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
Length = 476
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/444 (23%), Positives = 169/444 (38%), Gaps = 102/444 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQ 166
+V +PKP F + + +G+ P+I W E +
Sbjct: 154 QV-----IPKP--FSRVQSIKWGNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYK 206
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S +S D G A L FG +SV+ + H N E R S
Sbjct: 207 TFKKFFSSKLVSYSEGRDFPGQNVHSMLAPYLSFGQISVKLMF---HYLINKSTE-RQCS 262
Query: 225 HF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
F + QLIWRE+ Y + H P+ N N PW E E+ L W+
Sbjct: 263 LFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLRVWQK 317
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 318 GKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANN 377
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + D +G YI+R+VPELR P +YI++PW+AP
Sbjct: 378 TMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPE 437
Query: 344 GVQEKANCIISKDYPERIVNHVQA 367
+ +K+N + YP IV+H A
Sbjct: 438 HILQKSNIKLGDTYPFPIVDHKAA 461
>gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri]
Length = 520
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 104/435 (23%), Positives = 166/435 (38%), Gaps = 110/435 (25%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
HI +R FLLE L +L +L +G L+ + + L + N ++ E V
Sbjct: 46 HIPPHRVIFLLESLKNLKERLDEYGIPLYFIDEPMFQSLRMLISKWNINRVTTEPVVSIV 105
Query: 67 KPYQSFPTGSHPPRYQPCKTLLN---FRDLSGLPPRPKEDIDFRHVTFG----TMSESLQ 119
+ + N D +P FR +T ++ E L
Sbjct: 106 GKRDQLSLRNFLSAFGVMLRTYNSSTLYDTVKVPVNITRSEFFRIITQMEPELSLPEELT 165
Query: 120 REVSLFQTVPKPEQFHKYPEM-DFG-------DPLIRWLGGETEALIKLNERLSQEIESF 171
+S F + P P K P + +FG ++ GGET A+++L E+L
Sbjct: 166 EFLSKFSSFPDPFINKKIPSLSEFGITNETMSSIDTKFRGGETAAILQL-EKL------- 217
Query: 172 KSGVYLSNQVSPDLTGPPTSQ-------SAALKFGCLSVRRFY---WALHDHFNTIHEGR 221
++N+ P+ P +Q S A+KFGC+SVR Y L +N +
Sbjct: 218 -----IANRCEPN-NLPKVAQLNQYDAISPAIKFGCISVRTIYNRVSKLEPKYNEVKN-- 269
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
I L R+Y + + P D + + +PW K+ ++ G+
Sbjct: 270 -----QIYDGLRNRDYCILVGGNCPNIDN-QGSIYTYILPW-----DVKQDASTRFQTGR 318
Query: 282 TGYPFIDAVMRQLRR-----------------------------------LLDCTYCVC- 305
TGYPFIDA + QL+R LD +C
Sbjct: 319 TGYPFIDAAIAQLKREGFIHNSVKNILVRTLTCDLMWIGWHEGVRMFYKWSLDYNAAICA 378
Query: 306 ----------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ + +D DG YI++Y+PEL+ +P +YI+ PW APL
Sbjct: 379 LSWMHGSKSTWLLEEISISQINPIEEAKEIDKDGDYIRKYLPELKDYPSEYIHTPWLAPL 438
Query: 344 GVQEKANCIISKDYP 358
Q ++ C+I +DYP
Sbjct: 439 DQQIESECVIGQDYP 453
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/443 (22%), Positives = 167/443 (37%), Gaps = 92/443 (20%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---- 56
++ T IG +L + D+ RQL++ G L I +G+ + L +L T
Sbjct: 28 VYDETFSIGSASKWWLHHTIIDVKRQLEALGSTLIIRKGNTMEEILSLIEQLGITAVYWN 87
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C++ D ++ Q + CK + L + K++ +++ F
Sbjct: 88 ICYDPD--RLQSNQKMKMMLED-KGITCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYN 142
Query: 117 SLQREV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLN 161
+ Q++V S Q++ + H P + + + W E A
Sbjct: 143 AFQKQVISKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCK 202
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ S ++ S+ G NQ + + P L FG +SV+ Y L + N
Sbjct: 203 KFFSSKLVSYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMYHYLINKSNEKQCSL 256
Query: 222 PPSHFN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
N Q IWRE+ Y + H P+ N PW N++K L W+ G
Sbjct: 257 FEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEYFPW-----NNEKKLLRVWQKG 311
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYPFIDA M R+ ++ V
Sbjct: 312 KTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 371
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D DG YI+++VPELR P +YI++PW+AP
Sbjct: 372 MGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEH 431
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 432 ILQKANIKLGDTYPLPVVDHKAA 454
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 161/460 (35%), Gaps = 134/460 (29%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG G +L LA L R L + G L + +G +L RE + + +
Sbjct: 43 PGGWRPGGASRWWLHHSLASLSRSLATAGSPLVLRRGRADVAIGELVRETGAGTVLWNR- 101
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
C Y+P T RD R K D+ V + + SL RE
Sbjct: 102 C-----------------YEPWATE---RD-----SRLKADLRAAGVEVKSFNGSLLREP 136
Query: 123 SLFQT-------------------------VPKPEQFHKYPEMDFGDPLIRW-------- 149
+T + P++ P DPL W
Sbjct: 137 MTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPDRLEAPPTAPASDPLESWGLLPTTPD 196
Query: 150 -LGGETEALIKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVR 204
GG +A ++ + +F G Y + P G TS+ S L FG +S R
Sbjct: 197 WAGGLRQAWQPGEAAVAARLRAFLEGAAADYAEGRDRPGSDG--TSRLSPYLHFGEISPR 254
Query: 205 RFYWALHDHFNTIHEGRPPSHF----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
+ + A D + G PP H + +L WRE+ Y + H P + NP +
Sbjct: 255 QVWAATRD---AMLSGNPPEHRRHAESFLRELGWREFCYNLLYHFPKLPERPLNPRFEDF 311
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----CPV 307
PW P+S L++W+ G+TGYP +DA MRQL R++ ++ V P
Sbjct: 312 PWQPDS-----AALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVGSFLVKHLLLPW 366
Query: 308 NFGRR-------------------------------------------LDPDGIYIKRYV 324
G+R DPDG Y++R+V
Sbjct: 367 QEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKFDPDGRYVRRWV 426
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
PEL P I++PW A +A + DYP + H
Sbjct: 427 PELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEH 466
>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
Length = 476
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 105/444 (23%), Positives = 169/444 (38%), Gaps = 102/444 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQ 166
+V +PKP F + + +G+ P+I W E +
Sbjct: 154 QV-----IPKP--FSRVQSIKWGNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYK 206
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S +S D G A L FG +SV+ + H N E R S
Sbjct: 207 TFKKFFSSKLVSYSEGRDFPGQNVHSMLAPYLSFGQISVKLMF---HYLINKSTE-RQCS 262
Query: 225 HF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
F + QLIWRE+ Y + H P+ N N PW E E+ L W+
Sbjct: 263 LFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLRVWQK 317
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 318 GKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANN 377
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + D +G YI+R+VPELR P +YI++PW+AP
Sbjct: 378 TMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPE 437
Query: 344 GVQEKANCIISKDYPERIVNHVQA 367
+ +K+N + YP IV+H A
Sbjct: 438 HILQKSNIKLGDTYPFPIVDHKAA 461
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 109/463 (23%), Positives = 181/463 (39%), Gaps = 124/463 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK----------EDIDFRH--- 108
+ + + +N + LSG+P + K +D+ F
Sbjct: 104 EVTAEE--------------LAVEKAVN-KALSGVPVQIKTFWTATLYHPDDLPFTLNQL 148
Query: 109 -VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWL 150
F + ++R + T P P++ K P+++ G+ ++ +
Sbjct: 149 PELFTNFRKQVERHWQIRATYPTPKKLTKLPKIELGNLPSLNDLGLTESILDRGGVLSFQ 208
Query: 151 GGETEALIKLNERL--SQEIESFKS--GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
GGE ++ E + S ++++K L N S SA L FGCLS R
Sbjct: 209 GGEMAGKSRVKEYIWDSDSLKTYKETRNEMLGNNYSSKF-------SAWLSFGCLSPRYI 261
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y + + T + S + + +L+WR++F M + + L +PWL +
Sbjct: 262 YEEVQKYEQT--RVKNDSTYWLIFELLWRDFFRFMCRKHGNKIFYKSGLQELYLPWLEDW 319
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------LRRLLDCTYC----- 303
N W G+TGYP +DA MR+ L + L +C
Sbjct: 320 ER-----FNLWCEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLSKNLGIDWCMGAEW 374
Query: 304 ---------VCPVNFG------------------------RRLDPDGIYIKRYVPELRQF 330
VC N+G + DP G Y++ ++PEL
Sbjct: 375 FESLLIDYDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELALI 433
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
I+EP+K Q++ I+ +YP IV+ Q+ N++
Sbjct: 434 KGDKIHEPYKLSPEEQKRYGVILGVNYPRPIVDFFQSIKHNEK 476
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 102/445 (22%), Positives = 171/445 (38%), Gaps = 98/445 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PGT R F+L L +LD L++ GG L ++ G P+ + KL EL + D
Sbjct: 63 PGT-QAQDRRVEFILASLHELDEALRARGGGLVVLYGDPVDLVPKLAAELEVDAVFANHD 121
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGT 113
E + + L F+D L+G ++ F F
Sbjct: 122 YEPAAIERD--EAVRERLSDAGRALQTFKDQVIFERAELLTG------QNKPF--TVFTP 171
Query: 114 MSESLQREVSLFQTVPKPEQFHKY------PEMDFGDPLIRWLG------GETEALIKLN 161
+ ++++ F P P + + P ++ P + LG GE E ++
Sbjct: 172 YKNAWLKQLTSFDLKPFPVETYANRLAPLPPRLNRQLPTLEQLGFAPGNLGELELPTGMS 231
Query: 162 --ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
+RL + S + Y + P GP + S L+FG +S+R H+ + +
Sbjct: 232 GAQRLLDDFLS-RIDSYAERRDFPAAKGP-SYLSVHLRFGTVSIRTLARLAHE-MSLQPD 288
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN-IPWLPESHPNKEKYLNAWK 278
GR + + +L+WR++++ + AH+P + + W E P E AW
Sbjct: 289 GRGAATW--LSELVWRDFYFMILAHHPRLAAGASFRADYDRLRW--EQGPEAEAAFAAWC 344
Query: 279 NGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRL---------------- 313
G+TGYP IDA M QL R++ ++ V + RL
Sbjct: 345 EGRTGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAA 404
Query: 314 -------------------------------DPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
D +G +IKRY+P+L + P ++I+ PW A
Sbjct: 405 NNGGWQWAASTGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAPWLAG 464
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
+ ++ +DYP IV+H QA
Sbjct: 465 AQRLAEYGVMLGEDYPAPIVDHAQA 489
>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
Length = 691
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 124/332 (37%), Gaps = 113/332 (34%)
Query: 138 PEMDFGDPLIRWLG----------GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
P+ DF P + LG GE+ L +L E E +G + + SP
Sbjct: 217 PKGDFSPPTLEELGMPAATSPHKGGESVVLERLEEMFKDED---YTGTFQKPKTSPAAFE 273
Query: 188 PPTS--QSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF---NITGQLIWRE-YFYTM 241
P ++ S L FG LS R FY + + ++ + P+ ++ GQL++R+ YF
Sbjct: 274 PQSTFLTSPYLHFGALSCRYFYHRVAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQ 333
Query: 242 SAHNPYYDQMEKNPICLNIPW-LPE----------------------------------- 265
+A + Q N C IPW LP
Sbjct: 334 AALGWQFGQTLGNSHCRFIPWHLPSKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFP 393
Query: 266 --SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------------------------- 295
E +L W +G TG+P+ID +MRQLR
Sbjct: 394 WIDSEETELWLQRWTHGTTGFPWIDVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWER 453
Query: 296 ---------------------RLLDCTY-------CVCPVNFGRRLDPDGIYIKRYVPEL 327
+ L CT C PV FG++ D +G +I+++VPEL
Sbjct: 454 GLEVFEELLIDHESACNIGNWQWLSCTAFFAQFYRCYSPVAFGKKWDENGDFIRKFVPEL 513
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
FP +YIYEP KAPL Q+KA + D E
Sbjct: 514 AHFPKKYIYEPHKAPLADQKKAGVRVDGDGSE 545
>gi|402556671|ref|YP_006597942.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
gi|401797881|gb|AFQ11740.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
Length = 476
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 166/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QLK+ G I +G +S+ ++L + +C+E
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGATFIIRKGKTQEEILSLIEQLDITAVYWNICYE 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMILED-KGIICKEFNSHLLLEPWMIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPLIR----------------------WLGGETEALI 158
Q +PKP K + +G L W E A
Sbjct: 154 -----QAIPKPTS--KVQSIKWGSSLPASLSVSELHLLPTIPWTYHMESIWNPTEEGAYK 206
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+ S ++ + G NQ + P L FG +SV+ + L + N
Sbjct: 207 TFKKFFSSKLTFYSEGRDFPNQNVHSMLAP------YLSFGQISVKLMFHYLINKSNEKQ 260
Query: 219 EGRPPSHFN-ITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
N Q IWRE+ Y + H P+ Y + KN + PW N+E+ L
Sbjct: 261 CSLFEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLR 313
Query: 276 AWKNGQTGYPFIDAVMRQ----------------------------------LRRLLDCT 301
W+ G+TGYPFIDA MR+ + LLD
Sbjct: 314 VWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 302 YC----------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D DG YI++++PELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWIPELRDMPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V+H A
Sbjct: 434 EAPEHILQKANIQLGNTYPLPVVDHKAA 461
>gi|392531474|ref|ZP_10278611.1| deoxyribodipyrimidine photo-lyase [Carnobacterium maltaromaticum
ATCC 35586]
Length = 475
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 107/266 (40%), Gaps = 74/266 (27%)
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT 216
+K +RL Q I SG+ +Q TS+ S L+ G LS+R Y +
Sbjct: 209 LKARKRLRQFI---SSGIEQYDQTRDFPAQKGTSRLSQFLRTGELSIREVY-------HR 258
Query: 217 IHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
I P S T +L WR+++ + NP +E N+ W N E+ L
Sbjct: 259 IKAEAPDSIGKETYLKELCWRDFYNMIYFENPQQQVLEIKEQYRNLQW-----NNDEQLL 313
Query: 275 NAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------------- 304
AWK GQTGYP +DA MRQL R++ ++ V
Sbjct: 314 QAWKTGQTGYPLVDAAMRQLNQTGWMHNRLRMIAASFLVKDLLMDWRLGEAYFAEKLIDY 373
Query: 305 --------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
P +R D G +I +YVPEL+ P Y++EP
Sbjct: 374 DAASNIGGWQWAASTGTDAVPYFRIFNPTTQSQRFDEAGDFIYKYVPELKGIPHAYLHEP 433
Query: 339 WKAPLGVQEKANCIISKDYPERIVNH 364
K PL +Q++ II +DYP+ IV H
Sbjct: 434 SKMPLNIQQEKQIIIGEDYPQPIVQH 459
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 99/456 (21%), Positives = 177/456 (38%), Gaps = 110/456 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE LADL R L+ G L I +G P + +L ++ + + +C+ +
Sbjct: 51 FPKT---GAFRAQFLLESLADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHK 107
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGL----PPRPKEDIDFRHVTFGTMSES 117
+ V + + +P L R G P DI F + +
Sbjct: 108 E---VTSEEVIVEDALERALKPMGVEL--RSFWGHTLYHPAELPFDISEIPELFTSFRKQ 162
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALIKL 160
+++ V++ T+P P++ P ++ G+ +++++GGET +L
Sbjct: 163 VEKSVTVNSTLPAPKRLPALPAIEPGEMPQLAEFNLKAPNFDSRAVLKFVGGETAGHNRL 222
Query: 161 NE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
+ ++ +E + G S++ SP L GCLS R Y +
Sbjct: 223 DYYFWQQDCLKVYKETRNGMLGADYSSKFSP-----------WLALGCLSPRTIYEQVQQ 271
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+ + S + + +L+WR+YF + A + + IPW +
Sbjct: 272 YEE--QRVKNDSTYWLIFELLWRDYFRFICAKHGDRIFRLSGLQGVPIPW-----KEDWQ 324
Query: 273 YLNAWKNGQTGYPFIDAVMRQLRR----------------------------------LL 298
+ N W++G+TG+P +DA MR+L L+
Sbjct: 325 HFNLWRDGKTGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLI 384
Query: 299 DCTYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D C N+ + DPDG Y+K ++PEL P ++E
Sbjct: 385 DYDVCSNWGNWNYTAGVGNDARGFRFFNITKQAKDYDPDGAYVKCWLPELASLPADKVHE 444
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
PW Q + N + DYP +V+ +++ N++
Sbjct: 445 PWNLLPVEQHRFNIRLGVDYPYPVVDLFKSAAANEK 480
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/444 (23%), Positives = 168/444 (37%), Gaps = 102/444 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQ 166
+V +PKP F + + +G+ P I W E +
Sbjct: 154 QV-----IPKP--FSRVQSIKWGNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYK 206
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S +S D G A L FG +SV+ + H N E R S
Sbjct: 207 TFKKFFSSKLVSYSEGRDFPGQNVHSMLAPYLSFGQISVKLMF---HYLINKSTE-RQCS 262
Query: 225 HF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
F + QLIWRE+ Y + H P+ N N PW E E+ L W+
Sbjct: 263 LFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLRVWQK 317
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 318 GKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANN 377
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + D +G YI+R+VPELR P +YI++PW+AP
Sbjct: 378 TMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPE 437
Query: 344 GVQEKANCIISKDYPERIVNHVQA 367
+ +K+N + YP IV+H A
Sbjct: 438 HILQKSNIKLGDTYPYPIVDHKAA 461
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 164/448 (36%), Gaps = 109/448 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-----GVKPY 69
+L L D ++ G L I +G+P + QKL E N + + + E K
Sbjct: 51 WLHHALNDFKTSIEKIEGTLIIKKGNPKDVLQKLIHETNAQDIYWNRRYEPHALKRDKEL 110
Query: 70 QSFPTGSHPPRYQPCKTLLNFRDLSG-LPPRP----KEDIDFRHVTFGTMSESLQREVSL 124
Q+F + +N R G L P KE+ D V S + VS
Sbjct: 111 QAFFSEQQ----------INIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHAVS- 159
Query: 125 FQTVPKPEQFHKYP---------EMDF-----GDPLIR--WLGGETEALIKLNERLSQEI 168
TV K H + ++D D I+ W E A+ L ++
Sbjct: 160 -STVKKVTSIHAFSSSIESLSVSDLDLLPSIPWDETIKSTWDATEQGAINSFKTFLKNKL 218
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
++ G + P + G LS R Y L + + +
Sbjct: 219 LHYEKGRDFPAEAFNSFLSPYFAS------GQLSARVLYHYLRNKAEKVSSNAFEHQTEM 272
Query: 229 -TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFI 287
QL+WR++ Y + H P+ N W + N+E L AWKNG+TGYP +
Sbjct: 273 FIRQLVWRDFAYQLLYHFPHTTSEPLNEKFKQFQW---ADGNEE--LQAWKNGKTGYPLV 327
Query: 288 DAVMRQLR---------RLLDCTYCV---------------------------------- 304
DA MR+L R++ ++ V
Sbjct: 328 DAGMRELWETGFMHNRVRMVAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWIA 387
Query: 305 -------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANC 351
P + D +G YIK+++PELR P YI++PW+AP V EKAN
Sbjct: 388 GSGADAAPYFRIFNPTAQSEKFDKEGEYIKKWLPELRDLPSSYIHKPWEAPADVLEKANV 447
Query: 352 IISKDYPERIVNHVQA---SLENKQYLK 376
+ K YP IV+H A +LE+ Q +K
Sbjct: 448 TLDKTYPTPIVDHKAARERALEHYQDIK 475
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/473 (22%), Positives = 186/473 (39%), Gaps = 132/473 (27%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L R L+ G L I G P I +L R+ + + +
Sbjct: 50 FPKT---GNFRGQFLLESVANLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHR 106
Query: 62 DCEGVKPY-----------QSFPTGS------HPPRYQPCKTLLNFRDLSGLPPRPKEDI 104
+ + + Q+ G+ H P P G+P P+
Sbjct: 107 EVTAEETHIEKRLQKNLSQQNVSVGTFWGTTLHEPEEMPF----------GIPQVPEVFT 156
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPE---MDFGD-PLIRWL---------- 150
FR +++++ ++ Q +P P++ P M G+ P ++ L
Sbjct: 157 QFR--------KTVEKYANIVQALPTPQELPPLPSELAMALGELPTLKQLGLSTPESDRR 208
Query: 151 ------GGETEALIKLNERL--SQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGC 200
GGET AL +L + ++S+K Q L G S S L GC
Sbjct: 209 GVLAFQGGETAALERLQDYFWRGNHLKSYK-------QTRNGLLGGDYSSKFSPWLALGC 261
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
LS R+ A + T +++ I +L+WR+YF +SA + K + I
Sbjct: 262 LSARQIA-AQVSRYETERVANDSTYWLIF-ELLWRDYFRWISAKHGIKIFQPKGLQGVKI 319
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL-------------------------- 294
PW ++E + W+ GQTG PF+DA MR+L
Sbjct: 320 PW----KQDREAF-ELWRTGQTGIPFVDANMRELLQTGFMSNRGRQNVGSFLTKNLGLDW 374
Query: 295 --------RRLLDCTYCVCPVNF---------------------GRRLDPDGIYIKRYVP 325
+L+D C N+ + DP G Y++ ++P
Sbjct: 375 RMGAEWFESQLIDYDVCSNWGNWNYTAGVGNDARGFRYFNIPKQAKDYDPQGEYVRHWLP 434
Query: 326 ELRQFPIQYIYEPWKAPL-GVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
EL+ P + I++PW+ + + ++ + + + YP+ +V+ Q+ EN++ +K
Sbjct: 435 ELKSIPGEQIHQPWRISVRELGDRHDITLGETYPKPMVDLQQSVQENERIYQK 487
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 169/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSAAKWWLHHAVKDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D V+ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RVQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKL 160
+V +PKP + H P + + + W E A
Sbjct: 154 QV-----IPKPIRKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWNPTEEGAYKTF 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G +Q + P L FG +SV+ + H N E
Sbjct: 209 KKFFSSKLVSYSEGRDFPDQNVHSMLAP------YLSFGQISVKLMF---HYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
R S F + QLIWRE+ Y + H P+ N N PW E E+ L+
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKE-----EELLS 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+R+VPEL P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELSDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP IV+H A
Sbjct: 434 EAPAHILQKANIKLGDTYPYPIVDHKAA 461
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSAAKWWLHHAVKDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKL 160
+V +PKP + H P + + + W E A
Sbjct: 154 QV-----IPKPISRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTF 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G +Q + P L FG +SV+ + H N E
Sbjct: 209 KKFFSSKLASYSEGRDFPDQNVHSMLAP------YLSFGQISVKLMF---HYLVNKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
R S F + QLIWRE+ Y + H P+ N N PW E E+ L+
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKE-----EELLS 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+R+VPEL P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELSDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP+ + +KAN + YP IV+H A
Sbjct: 434 EAPVHILQKANIKLGDTYPYPIVDHKAA 461
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 177/445 (39%), Gaps = 104/445 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTEEEILSLIEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D + CK + L + K++ +++ F + Q+
Sbjct: 99 PDRLQFNQNMKMMLED---KGITCKEFNSHLLLEPWMIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTV----PKPE-----QFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ PE + H P + + + W E A + S
Sbjct: 154 QVISKPISKVQSIKWGSSLPESLSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SVR W H N E R S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVR---WMYHYLINKSTE-RQCSL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
F + QLIWRE+ Y + H P+ Y + KN + PW N+E+ L W+
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPW-----NNEEELLTVWQ 316
Query: 279 NGQTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD--- 316
G+TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIAN 376
Query: 317 ----------------------------------GIYIKRYVPELRQFPIQYIYEPWKAP 342
G YI+++VPEL+ P +YI++PW+AP
Sbjct: 377 NTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELKDMPNKYIHKPWEAP 436
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 437 EHILQKANIKLGDTYPLPVVDHKAA 461
>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GGE+EAL +L + L +++ + S + S + L P S L+FGCLS R FY+
Sbjct: 246 WRGGESEALERLRKHLEKKV--WVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYY 303
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
L +H+ + +G P ++ GQL+WRE+FYT + +NP +D+M NPIC+ +
Sbjct: 304 NLREHYIRLCKGCSPP-LSLFGQLLWREFFYTAATNNPNFDRMAGNPICVQV 354
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
C CPV FGRR DP G YI+RY+P L+ +P +YIYEPW AP VQ+ ANC++ DYP ++
Sbjct: 529 CYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMI 588
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL 48
F G ++G NR+RFLLE L DLD LK +LF+V+G P +F +L
Sbjct: 41 FAGAANVGINRWRFLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRL 87
>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
Length = 476
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/446 (23%), Positives = 168/446 (37%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLRHAIMDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G +Q + P L FG +SV+ + H N E R
Sbjct: 211 FFSSKLVSYSEGRDFPDQNVHSMLAP------YLSFGQISVKLMF---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N + PW E E+ L W
Sbjct: 261 CSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKE-----EELLRVW 315
Query: 278 KNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------ 304
+ G+TGYPFIDA M R+ ++ V
Sbjct: 316 QKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+R+VPELR P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +K+N + YP IV+H A
Sbjct: 436 PEHILQKSNIKLGNTYPYPIVDHKAA 461
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 173/450 (38%), Gaps = 114/450 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSAAKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKL 160
+V +PKP + H P + + + W E A
Sbjct: 154 QV-----IPKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTF 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G NQ + + P L FG +SV+ Y H N E
Sbjct: 209 KKFFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKY 273
R S F + QLIWRE+ Y + H P+ Y + KN + PW E E+
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EEL 311
Query: 274 LNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 312 LRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLD 371
Query: 305 ---------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G + D +G YI+++VPELR P +YI++
Sbjct: 372 ADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHK 431
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP + +KAN + YP +V+H A
Sbjct: 432 PWEAPEHILQKANIKLGNTYPLPVVDHKAA 461
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +G S+ ++L+ + +C++
Sbjct: 39 TFSMGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEIRSLIEQLRITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKL 160
Q +PKP + H P + + + W E A
Sbjct: 154 -----QIIPKPISKVQSIKGGNSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTC 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G NQ + + P L FG +SVR Y H N E
Sbjct: 209 KKFFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVRLMY---HYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
R S F + QLIWRE+ Y + H P+ N + PW N+++ L
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPW-----NNEDELLT 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+R+VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V+H A
Sbjct: 434 EAPEHILQKANIQLGHTYPLPVVDHKAA 461
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 170/450 (37%), Gaps = 114/450 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QLK+ G I G +S+ ++L + +C++
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGSTFIIRNGKTQEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D +K Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLKSNQKMKMMLED-KGIICKEFNSHLLLEPGIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEALI 158
+V +PKP K + +G+ P I W E A
Sbjct: 154 QV-----IPKP--IRKVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYK 206
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+ S ++ S+ G NQ + + P L FG +SV W H N
Sbjct: 207 AFKKFFSSKLASYSEGRDFPNQNTHSMLAP------YLSFGQISVS---WMYHYLINKST 257
Query: 219 EGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
E R S F + QLIWRE+ Y + H P+ N N PW E E+
Sbjct: 258 E-RQCSLFEEQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EEL 311
Query: 274 LNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LD 314
L W+ G+TGYPFIDA MR+L R+ ++ V P G + LD
Sbjct: 312 LRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLD 371
Query: 315 PD-------------------------------------GIYIKRYVPELRQFPIQYIYE 337
D G YI+++VPELR P +YI++
Sbjct: 372 ADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHK 431
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP + +K N + YP +V+H A
Sbjct: 432 PWEAPEHILQKVNIKLGNAYPLPVVDHKAA 461
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 173/450 (38%), Gaps = 114/450 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSAAKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKL 160
+V +PKP + H P + + + W E A
Sbjct: 154 QV-----IPKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTF 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G NQ + + P L FG +SV+ Y H N E
Sbjct: 209 KKFFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKY 273
R S F + QLIWRE+ Y + H P+ Y + KN + PW E E+
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EEL 311
Query: 274 LNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 312 LRVWQKGETGYPFIDAGMRELWKTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLD 371
Query: 305 ---------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G + D +G YI+++VPELR P +YI++
Sbjct: 372 ADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHK 431
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP + +KAN + YP +V+H A
Sbjct: 432 PWEAPEHILQKANIKLGNTYPLPVVDHKAA 461
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 171/450 (38%), Gaps = 114/450 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QLK+ G I G +S+ ++L + +C++
Sbjct: 41 TFSIGSAAKWWLHHAIIDVQKQLKALGSTFIIRNGKTQEEILSLIEQLDITAVYWNICYD 100
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 101 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 155
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKL 160
+V +PKP + H P + + + W E A
Sbjct: 156 QV-----IPKPISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTF 210
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G NQ + + P L FG +SV+ Y H N E
Sbjct: 211 KKFFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE- 260
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKY 273
R S F + QLIWRE+ Y + H P+ Y + KN + PW E E+
Sbjct: 261 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EEL 313
Query: 274 LNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 LRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLD 373
Query: 305 ---------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G + D +G YI+++VPELR P +YI++
Sbjct: 374 ADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHK 433
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP + +KAN + YP +V+H A
Sbjct: 434 PWEAPEHILQKANIELGNTYPLPVVDHKAA 463
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +G+ S+ ++L + +C++
Sbjct: 39 TFPMGSASKWWLHHAIIDVKKQLETLGSTLIIRKGNTQEEIFSLIEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIVCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKL 160
+V +PKP + H P + + + + W E A
Sbjct: 154 QV-----IPKPISRVQSIKWGNSLPASLFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTF 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G NQ + P L FG +SV+ + H N E
Sbjct: 209 KKFFSSKLVSYSEGRDFPNQNVHSMLAP------YLSFGQISVKLMF---HYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
R S F + QLIWRE+ Y + H P+ N N PW E E+ L
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+R+VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP IV+H A
Sbjct: 434 EAPEHILQKANIQLGHTYPFPIVDHKAA 461
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 171/450 (38%), Gaps = 114/450 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPL----------------------IRWLGGETEALI 158
+V +PKP F + + +G+ L + W E A
Sbjct: 154 QV-----IPKP--FSRVQSIKWGNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYK 206
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+ S+++ S+ G Q + P L FG +SV+ + H N
Sbjct: 207 TFKKFFSRKLVSYSEGRDFPGQNVHSMLAP------YLSFGQISVKLMF---HYLINKST 257
Query: 219 EGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
E R S F + QLIWRE+ Y + H P+ N N PW E E+
Sbjct: 258 E-RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EEL 311
Query: 274 LNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 312 LRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLD 371
Query: 305 ---------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G + D +G YI+R+VPELR P +YI++
Sbjct: 372 ADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHK 431
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP + +K+N + YP IV+H A
Sbjct: 432 PWEAPEHILQKSNIKLGDTYPFPIVDHKAA 461
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/451 (23%), Positives = 169/451 (37%), Gaps = 116/451 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK----LCFE 60
T IG +L + D+ +QL++ G L I +G+ + L +L T +C++
Sbjct: 39 TFSIGSASKWWLHHAIIDVKKQLEALGSTLIIRKGNTLEEILSLIEQLGITAVYWNICYD 98
Query: 61 QD---CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSES 117
D C G CK + L + K++ +++ F +
Sbjct: 99 PDRLQCNQKMKIMLEEKGI------ICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNA 150
Query: 118 LQREVSLFQTVPKP-------------------EQFHKYPEMDFGDPLIR-WLGGETEAL 157
Q+ Q +PKP + H P + + + W E A
Sbjct: 151 FQK-----QEIPKPISKVQRIKGGSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAY 205
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+ S ++ S+ G NQ + + P L FG +SVR W H N
Sbjct: 206 KACKKFFSSKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVR---WMYHYLINKS 256
Query: 218 HEGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
E R S F + Q IWRE+ Y + H P+ N + PW N+E+
Sbjct: 257 TE-RQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEHFPW-----NNEEE 310
Query: 273 YLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------L 313
L W+ G+TGYPFIDA MR+L R+ ++ V P G + L
Sbjct: 311 LLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFLDTLL 370
Query: 314 DPD-------------------------------------GIYIKRYVPELRQFPIQYIY 336
D D G YI+++VPEL+ P +YI+
Sbjct: 371 DADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIH 430
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+PW+AP + +KAN + YP +V+H A
Sbjct: 431 KPWEAPEHILQKANIKLGHTYPLPVVDHKAA 461
>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
Length = 626
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 142/356 (39%), Gaps = 75/356 (21%)
Query: 9 GYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC--- 63
G NR+++LL+C DL + +LF+++ P ++F KL + T L FE+D
Sbjct: 50 GLNRWQYLLDCQNDLSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSY 109
Query: 64 ----EGVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLP-----------------P 98
+GV + G + +TL + D+ G P P
Sbjct: 110 GRERDGVVVAAAREAGVEVI-MRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIP 168
Query: 99 RPKED-----------IDFRHVTFGTMSE--SLQREVSL----FQTVPKPEQ---FHKYP 138
RP +DF T + + QR V + ++ P
Sbjct: 169 RPVAAPTKLPDPGEMPVDFEQERPDTTPDFNAAQRTVEAGDQGYASIAGPNGDFGIETME 228
Query: 139 EMDFGDPLIRWLGGETEALIKLNERLSQEIESFK-SGVYLSNQVSPDLTGPPTSQ--SAA 195
E+ F GGE+ AL E L + ++ K + + Q SP P ++ S
Sbjct: 229 ELGFPSATTPHRGGESRAL----ETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPH 284
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE-YFYTMSAHNPYYDQMEKN 254
+ FG LSVR FYW D +G ++TGQL++R+ YF +A ++Q N
Sbjct: 285 MHFGSLSVREFYWQAVDAVKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQTRGN 344
Query: 255 PICLNIPWLPESHPNKEK----------------YLNAWKNGQTGYPFIDAVMRQL 294
C IPW S N E + WK GQTG+P+IDA+MRQL
Sbjct: 345 AYCRFIPWHLPSKVNTETGLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQL 400
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 94/230 (40%), Gaps = 70/230 (30%)
Query: 193 SAALKFGCLSVRRFY-WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
S L+FG LS+RR +A HD EG +LIWR+++ + H P +
Sbjct: 243 SVHLRFGTLSIRRLAAYAWHDG----GEG----AMTWLSELIWRDFYQQVLWHRPDAAKH 294
Query: 252 EKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------- 296
P +P+ PN ++ +AW+ G+TGYP +DA MRQL R
Sbjct: 295 AFKPEYDALPF-----PNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASF 349
Query: 297 -------------------LLD--------------CTYCVC--------PVNFGRRLDP 315
LLD T C PV+ + DP
Sbjct: 350 LVKDLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDP 409
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
DG +I+RYVPEL P + I+ PW+A A + +DYP IV+H
Sbjct: 410 DGRFIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIVDHA 459
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/442 (23%), Positives = 164/442 (37%), Gaps = 120/442 (27%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--DCEGVK----- 67
+L LA L L + G +L + G +++ +KL +E + + + D GV+
Sbjct: 60 WLHYSLAALQIALDAVGSKLILRHGEALTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQI 119
Query: 68 ---------PYQSFP-------------TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDID 105
SF TG+H Y P + SG PP P E
Sbjct: 120 KKALRSKGIEANSFAGQLLHEPTRLRTGTGNHYKTYTPFWRAF---EQSGEPPFPIE-AP 175
Query: 106 FRHVTFGTMSESLQREVSLFQTVP-KPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERL 164
R + G +S + + +P KP ++ ++ W GE AL KL + +
Sbjct: 176 RRLLAPGRWPQS--DSLDAWSLLPAKPNWASEFADI--------WTPGEAAALDKLKDFV 225
Query: 165 SQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA---LHDHFNTIHEGR 221
+ + G ++ + L P L G +S R + A L D T + R
Sbjct: 226 DGALNDYAIGRDFPDKPATSLLSP------HLALGEISPARMWHATRGLPDKVGTDNVVR 279
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
++IWRE+ Y H P N + PWL ++ K L +W+ GQ
Sbjct: 280 ------FRKEIIWREFCYHQLFHFPKLRTANWNDRYDDFPWLSDA-----KRLKSWQRGQ 328
Query: 282 TGYPFIDAVMRQLRR----------------------------------LLDCTYCVCPV 307
TGYP +DA MRQL R L+D
Sbjct: 329 TGYPIVDAGMRQLWRHGWMHNRVRMIAASFLIKDLLIDWREGEAWFRDTLVDADPAANTA 388
Query: 308 NF----------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
N+ G + DPDG Y++ +VPEL + +YI+ P++AP V
Sbjct: 389 NWQWVAGSGADASPFFRIFNPVLQGEKFDPDGGYVRTFVPELSKLDSKYIHRPFEAPDDV 448
Query: 346 QEKANCIISKDYPERIVNHVQA 367
++A + + YP IV+H A
Sbjct: 449 LKRAGIELGRHYPRPIVDHAMA 470
>gi|410615205|ref|ZP_11326231.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165289|dbj|GAC40120.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 484
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 124/322 (38%), Gaps = 83/322 (25%)
Query: 128 VPKPEQFHKYPEMDFG------DPLIRWLG--------GETEALIKLNERLSQEIESFKS 173
VPK Q +PE D G P I W G GE A L++ L + +K+
Sbjct: 168 VPKNLQIEYFPESDKGLDSLELMPDINWHGTIEKMWTPGEQGAANHLSDFLPDGAKEYKN 227
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI 233
+ PDL G + SA L FG +S + ++A D N E + +L
Sbjct: 228 -----KRDFPDL-GATSKLSAHLHFGEISPNQVWYAAIDSLNGNTEDVGLDCY--LSELG 279
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WRE+ +++ H P+ Q +P + PW + + L AW+ GQTG P +DA MR+
Sbjct: 280 WREFSHSLLFHFPHIPQKNFSPKFEHFPWRTD-----DNSLKAWQLGQTGIPIVDAGMRE 334
Query: 294 L------------------------------RRLLDCTY--------------------- 302
L R DC
Sbjct: 335 LWQTGTMHNRLRMVVGSFLVKNLLIDWRKGERWFWDCLLDADLAANSASWQWIAGTGADA 394
Query: 303 -----CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
PV G+R DP G Y+KRY PEL + P ++I+ PW AP + A + +Y
Sbjct: 395 APYFRIFNPVTQGQRFDPKGDYVKRYCPELSKLPDKFIHNPWDAPQNILNYAGIKLGDNY 454
Query: 358 PERIVNHVQASLENKQYLKKEK 379
P +V+ + L L + K
Sbjct: 455 PRPLVDLKISRLRALDALAQSK 476
>gi|383783458|ref|YP_005468024.1| deoxyribodipyrimidine photo-lyase family protein [Leptospirillum
ferrooxidans C2-3]
gi|383082367|dbj|BAM05894.1| putative deoxyribodipyrimidine photo-lyase family protein
[Leptospirillum ferrooxidans C2-3]
Length = 483
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 114/279 (40%), Gaps = 68/279 (24%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+W+ GE +A + LN L + ++S Y N+ D G + S L G ++ R+
Sbjct: 198 KWIPGEEQAHMTLNTFLDERLQS-----YEKNRDRLDHEGY-SMLSPFLHAGEITSRQIV 251
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
A D + H G +L WRE+ + H P P + PW
Sbjct: 252 RATLDKMHE-HPGWQNDGEKFLSELGWREFSRYLLIHFPKMISEPFQPKFSSFPW----K 306
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV-------------- 304
N E L AWK+G+TGYP IDA MRQL R++ ++
Sbjct: 307 DNPEALL-AWKSGKTGYPVIDATMRQLWAIGYIPNRSRMISASFLTKDLLISWKEGARWF 365
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
PV G R DP+GI I++++PE++ P
Sbjct: 366 RETLVDHDLANNTVSWQWVSGMGVDAAPYFRIYNPVLQGERYDPEGIAIRKWIPEIKGLP 425
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLE 370
Q+I+ PW+AP + ++A I+ K YP IV+H A E
Sbjct: 426 NQWIHRPWEAPEPLLKRAGIILGKTYPAPIVDHSYARQE 464
>gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
M045]
gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
M045]
Length = 468
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 108/445 (24%), Positives = 158/445 (35%), Gaps = 130/445 (29%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
NR FL +CL DLD L+ GG+L + G + ++ E + ++ D
Sbjct: 49 NRLAFLADCLRDLDAGLRERGGRLVVRSGDLVEEVCRVAAEADAGEVHMASDVS------ 102
Query: 71 SFPTGSHPPRYQP---------------CKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS 115
+H R + T+ R + P ++ F S
Sbjct: 103 -----AHAHRREDRLRTALEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWS 157
Query: 116 ESLQREV-SLFQTVPKPEQF------HKYPEMDFGDPLIRWLGGETEALIKLNERLSQEI 168
E R V + VP PE + D L R GGE E +L L
Sbjct: 158 EQRTRSVLDAPRRVPVPEGIGSEEPPDRRELSDLSPGLAR--GGEREGRARLAAWLRGGS 215
Query: 169 ESFKSGVYLSN-----QVSPDLTGPPTSQ-SAALKFGCLS---VRRFYWALHDHFNTIHE 219
K + + DL G TS+ S L FG LS V R L
Sbjct: 216 GDGKGAGVVGDVGEYEDRHDDLAGDATSRLSPHLHFGTLSPVEVVREAGGL--------- 266
Query: 220 GRPPSHFNITGQLIWREYFYTM------SAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
G P + + QL WR++ + +AH Y + ++ W E +E
Sbjct: 267 GGPGAEAFVR-QLAWRDFHRQVLAARPAAAHEDYRTRHDR--------WRTERAAREE-- 315
Query: 274 LNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY---------------------- 302
+ AW+ G+TGYP +DA MRQLR RLL ++
Sbjct: 316 VQAWREGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLLVD 375
Query: 303 ------------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ PV GRR DP+G Y++R+VPEL + P ++EP
Sbjct: 376 GDLANNQMNWQWVAGTGTDSRPNRVLNPVVQGRRFDPEGAYVRRWVPELAEVPGAGVHEP 435
Query: 339 WKAPLGVQEKANCIISKDYPERIVN 363
WK +E A + Y ER+V+
Sbjct: 436 WKLRGAAREAA-----RGYAERVVD 455
>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|384187171|ref|YP_005573067.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675484|ref|YP_006927855.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452199537|ref|YP_007479618.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174613|gb|AFV18918.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452104930|gb|AGG01870.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKL 160
+V +PKP + H P + + + + W E A
Sbjct: 154 QV-----IPKPISRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTF 208
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ S ++ S+ G +Q + P L FG +SV+ + H N E
Sbjct: 209 KKFFSSKLVSYSEGRDFPDQNVHSMLAP------YLSFGQISVKLMF---HYLINKSTE- 258
Query: 221 RPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
R S F + QLIWRE+ Y + H P+ N N PW E E+ L
Sbjct: 259 RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYRPLNKSFENFPWNKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+R+VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRYIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +K+N + YP IV+H A
Sbjct: 434 EAPEHILQKSNIKLGDTYPYPIVDHKAA 461
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/448 (23%), Positives = 171/448 (38%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QL++ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDIKKQLEALGSTLIIRKGNIQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPTSKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ + G NQ + + P L FG +SV+ Y H N E R
Sbjct: 211 FFSSKLAFYSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
S F + QLIWRE+ Y + H P+ Y + KN + PW E E+ L
Sbjct: 261 CSLFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLISWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+++VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDMPSKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V+H A
Sbjct: 434 EAPEHILQKANIKLGHTYPLPVVDHKAA 461
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 174/443 (39%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTQEEILSLVEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGMICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A E S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 319 DTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+++VPEL+ P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIQLGHTYPLPVVDHKAA 461
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 174/443 (39%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTQEEILSLVEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLEH-KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A E S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 319 DTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+++VPEL+ P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIQLGHTYPLPVVDHKAA 461
>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB102]
gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
Length = 476
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/452 (23%), Positives = 172/452 (38%), Gaps = 118/452 (26%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +G+ +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVQKQLEALGSTLIIRKGNTQEEILSLIEQLDITAVYWNICYD 98
Query: 61 QD-CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
D + + + G + CK + L + K++ +++ F + Q
Sbjct: 99 PDKLQSNQKMKIVLEG----KGIVCKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQ 152
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEAL 157
++V +PKP K + G+ P IRW E A
Sbjct: 153 KQV-----IPKP--ISKVQRIKGGNSLPASLSVSELHLLPTIRWTSHIELIWEPTEEGAY 205
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+ S ++ + G N+ + + P L FG +SV+ W H N
Sbjct: 206 KTCKKFFSSKLAFYCEGRDFPNENAHSMLAP------YLSFGQISVK---WMYHYLINKS 256
Query: 218 HEGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE- 271
E R S F + Q IWRE+ Y + H P+ N + PW NKE
Sbjct: 257 TE-RQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEHFPW------NKED 309
Query: 272 KYLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------ 304
+ L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 310 ELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTL 369
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
P+ G + D DG YI+++VPELR P +YI
Sbjct: 370 LAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYI 429
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++PW+AP + +KAN I YP +V+H A
Sbjct: 430 HKPWEAPEHILQKANIQIGHTYPLPVVDHKAA 461
>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|423586430|ref|ZP_17562517.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|401229948|gb|EJR36456.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
Length = 476
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 168/444 (37%), Gaps = 102/444 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQ 166
+V +PKP F + + +G+ P I W E +
Sbjct: 154 QV-----IPKP--FSRVQSIKWGNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYK 206
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S +S D G A L FG +SV+ + H N E R S
Sbjct: 207 TFKKFFSSKLVSYSEGRDFPGQNVHSMLAPYLSFGQISVKLMF---HYLINKSTE-RQCS 262
Query: 225 HF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
F + QLIWRE+ Y + H P+ N + PW E E+ L W+
Sbjct: 263 LFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKE-----EELLRVWQK 317
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 318 GKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANN 377
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + D +G YI+R+VPEL+ P +YIY+PW+AP
Sbjct: 378 TMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELKDIPNKYIYKPWEAPE 437
Query: 344 GVQEKANCIISKDYPERIVNHVQA 367
+ +K+N + YP IV+H A
Sbjct: 438 HILQKSNIKLGDTYPFPIVDHKAA 461
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/425 (22%), Positives = 165/425 (38%), Gaps = 88/425 (20%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L L+ L L G L + +G + +L ++ K+ + + E PY+ T
Sbjct: 49 WLHHSLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYE--PPYREIDT 106
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF 134
R P + L P + K + F + + + +T+ P++F
Sbjct: 107 YLEN-RLPPLSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKF 165
Query: 135 HKYPEM---------------DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
++ + D+ +W GE A I L + + + +++ Y ++
Sbjct: 166 SQHRAIKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKN-----YPAH 220
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TGQLIWREYF 238
+ PD++ + S L FG +S+R+ + A+ TI + ++ QLIWRE+
Sbjct: 221 RDRPDISST-SHLSPYLHFGEISIRQVWTAITQ--ATIQDKNLQKAADVFLRQLIWREFA 277
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--- 295
Y + H P + N W + +L AW+ G TGYP +DA MR+L
Sbjct: 278 YYLLWHFPQMGRSNFRNQFDNFKW-----KKNKNWLRAWQKGLTGYPIVDAGMRELWCTG 332
Query: 296 ------RLLDCTYCV-----------------------------------C--------- 305
R++ ++ V C
Sbjct: 333 YMHNRVRMIVASFLVKDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFR 392
Query: 306 ---PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
P+ ++ DPDG YIKR++PEL + P +YI+ P P + E + + DYP IV
Sbjct: 393 IFNPILQSKKFDPDGTYIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIV 452
Query: 363 NHVQA 367
NH +A
Sbjct: 453 NHHKA 457
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/459 (23%), Positives = 183/459 (39%), Gaps = 116/459 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P I +L +EL K+ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQ 103
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK----------EDIDFRH--- 108
+ + + +N + LSG+P + K +D+ F
Sbjct: 104 EVTAEE--------------LAVEKAVN-KALSGVPVQIKTFWTATLYHPDDLPFTLNQL 148
Query: 109 -VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWL 150
F + ++R + T P P++ K P+++ G+ ++ +
Sbjct: 149 PELFTNFRKQVERYWQIRATYPTPKKLTKLPKIELGNLPSLNDLGLTESILDRGGVLSFQ 208
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE ++ E + + +S K+ N++ T + SA L FGCLS R Y +
Sbjct: 209 GGEMAGKSRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSFGCLSPRYIYEEV 265
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ T + S + + +L+WR++F + + + + L +PWL +
Sbjct: 266 QKYEQT--RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELYLPWLEDWER-- 321
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQ------------------LRRLLDCTYC--------- 303
N W G+TGYP +DA MR+ L + L +C
Sbjct: 322 ---FNLWCEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLSKNLGIDWCMGAEWFESL 378
Query: 304 -----VCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQY 334
VC N+G + DP G Y++ ++PEL
Sbjct: 379 LIDYDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDK 437
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
I+EP+K Q++ I+ +YP IV+ ++ N++
Sbjct: 438 IHEPYKLSPEEQKRYGVILGVNYPRPIVDFFRSIKHNEK 476
>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
HTCC1062]
gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1062]
Length = 473
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 86/309 (27%)
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYL 177
+ +S+ + +PK K+ + + DP E EA L E ++ +IE + +
Sbjct: 178 FKNSISIKEILPKKNWHKKFEK--YWDP------SEKEAKKYLQELINNKIEDYGDARDI 229
Query: 178 SNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREY 237
P + G + S LKFG + V + D + + + +L WRE+
Sbjct: 230 -----PGVNGT-SKLSPFLKFGQIHVETIWKKCQDI-----KVKKIGYRKYINELGWREF 278
Query: 238 FYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+++ Y+ QM K + N PW+ +K+L AWK G TGYP +DA MR+L
Sbjct: 279 SHSLIN---YFPQMLKGNLRKDFDNFPWVKN-----DKFLKAWKAGMTGYPIVDAGMREL 330
Query: 295 R---------RLLDCTYCV----------------CPVNF-------------------- 309
R++ ++ V C V++
Sbjct: 331 YETGWMHNRVRMIVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAA 390
Query: 310 -----------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
G + D DGIY K++VPEL+ P +++Y+PW+ QE+ I+ +YP
Sbjct: 391 PYFRIFNPILQGEKFDKDGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYP 450
Query: 359 ERIVNHVQA 367
+ I++HV+A
Sbjct: 451 KPIIDHVEA 459
>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. 'Ames Ancestor']
Length = 469
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 174/443 (39%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 32 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTQEEILSLVEQLGITAVYWNICYD 91
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 92 PD--RLQSNQKMKMMLEH-KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 146
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A E S
Sbjct: 147 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFS 206
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 207 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 256
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 257 FEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKG 311
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 312 DTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 371
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+++VPEL+ P +YI++PW+AP
Sbjct: 372 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEH 431
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 432 ILQKANIQLGHTYPLPVVDHKAA 454
>gi|403177785|ref|XP_003336224.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173202|gb|EFP91805.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 731
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 48/63 (76%)
Query: 305 CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P+ FG++ DP+G +I+ + PEL+ FP Q+IY+PW+AP VQ+KANC++ KDYP IVN
Sbjct: 576 SPIQFGKKFDPNGNFIRHFCPELKDFPKQFIYQPWEAPTAVQKKANCVVGKDYPAPIVNE 635
Query: 365 VQA 367
+A
Sbjct: 636 KEA 638
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 128/298 (42%), Gaps = 59/298 (19%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP--TSQSAALKFGCLSVRRFYW 208
GGET AL KL E L + + K + + SP P T+ SA KFG LS R FY
Sbjct: 350 GGETVALQKLEEYLKDKEKVLK---FEKPKTSPAEFNPASTTTLSAHFKFGTLSSRLFYA 406
Query: 209 ---ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL-- 263
L I PP ++ GQL+WR++F+ + Y Q+E N +C W
Sbjct: 407 RLKQLEKENPKIKASSPPE--SLIGQLLWRDFFHLQQSQIENYHQIEGNRVCRYFDWRLK 464
Query: 264 ------------PESH--PNKEKYLNAWKNGQTGYPFIDAVMRQL----------RRLLD 299
PE + P +K L AW +G TG+P+IDA+MRQL R +
Sbjct: 465 DRIRRKDVEADGPEDNQDPEAQKNLRAWIDGMTGFPWIDAIMRQLKTEGWIHHLARHSVA 524
Query: 300 C--TYCVCPVNFGRRLDPDGIYIKRYVPELRQ----------FPIQY--IYEPWK----- 340
C T +++ R + + + P L + QY +Y P +
Sbjct: 525 CFLTRGHLYISWERGAEVFDDLLIDWDPSLNSGNWMWLSASAYFQQYFRVYSPIQFGKKF 584
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQA 398
P G + C KD+P++ + + Q +KANC++ KDYP IVN +A
Sbjct: 585 DPNGNFIRHFCPELKDFPKQFIYQPWEAPTAVQ----KKANCVVGKDYPAPIVNEKEA 638
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGG--QLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
+G NR++FLL+ + DL + + G +LF+++G P + R+ T L FE+D
Sbjct: 143 VGPNRWQFLLDSMNDLSKSISRINGRSKLFVIRGEPSITLPYIWRQWGITHLAFEED 199
>gi|333983407|ref|YP_004512617.1| deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
gi|333807448|gb|AEG00118.1| Deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
Length = 453
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 153/421 (36%), Gaps = 92/421 (21%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV-----K 67
+F+LE L DL +Q ++H QL + QG P + +L RE F + +D
Sbjct: 56 LQFMLEALQDLQQQFRTHQWQLGLYQGQPEQLVSRLHREQAFEAIFVNRDYTPFGRRRDA 115
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT 127
Q+F Y TLLN + GL K D V + + V+L Q
Sbjct: 116 DLQTFCRKQGLAFYSCADTLLNEPE-HGL----KSDGSAYQVFTAFYNRARLHPVALPQG 170
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
+ + D + R + AL + Q+++ + S Q
Sbjct: 171 LADGQLLDGEQNSDL---ISRLQQDHSNALPGGRQAALQQLDQLTACRDYSQQRDFPALA 227
Query: 188 PPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
++ SA LKFGC SVR Y+A+ + T H + QL WR++F ++ H P
Sbjct: 228 ATSNLSAYLKFGCCSVRETYYAVVESLGTEHP--------LLRQLYWRDFFTQIAFHFPR 279
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------- 294
+ I W N + AW G+TG P +DA MRQL
Sbjct: 280 VFGHAFHERYDKIVW-----RNDREEFQAWTEGRTGVPIVDAGMRQLNQTGAMHNRVRMI 334
Query: 295 ---------------------RRLLDCTYCVCPVNF----------------------GR 311
R LLD CV N+ +
Sbjct: 335 VASFLVKDLHIDWRWGERYFARHLLDYDPCVNNGNWQWAASTGCDAQPYFRIFNPWLQQK 394
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
+ DPD +YIK +VPEL + I++ K PL + DYP IV H S +
Sbjct: 395 KFDPDCVYIKHWVPELNNYTPALIHDWLKQPL----------AGDYPPPIVEHGLRSQQA 444
Query: 372 K 372
K
Sbjct: 445 K 445
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 104/457 (22%), Positives = 177/457 (38%), Gaps = 112/457 (24%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL L+ G L I Q P + +L ++L+ + F Q
Sbjct: 50 FPKT---GVFRAKFLLESIADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQ 106
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTL-LNFRDLSGLPPRPKEDIDFRHVT----FGTMSE 116
+ ++ +Q K + + + G +D+ F F T +
Sbjct: 107 EVTELE------VKVERLVHQALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRK 160
Query: 117 SLQREVSLFQTVPKPEQFHKYPEMDFGD------------PL-----IRWLGGETEALIK 159
+++ S+ T P++ P++D G+ PL + + GGET A +
Sbjct: 161 DVEKNSSVNPTFSIPKKLSSLPKIDVGELPTLSDLNLEKPPLNSQGVLEFKGGETAAKER 220
Query: 160 LNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
+ ++ +E + G S++ SP L GCLS R Y +
Sbjct: 221 VKNYFWQQDYLKVYKETRNGMLGANYSSKFSP-----------WLALGCLSPRYIYEEVK 269
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
++ + S + + +LIWR+YF + + + + IPW + E
Sbjct: 270 EY--EYQRVKNQSTYWLIFELIWRDYFRFICQKHGNKIFHKSGLQGIAIPW----QEDWE 323
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL----------------------------------RRL 297
K+ W+ GQTG+P +DA MR+L L
Sbjct: 324 KF-RKWQAGQTGFPLVDANMRELLATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLL 382
Query: 298 LDCTYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIY 336
+D C N+ + DP+G Y+K ++PEL + P ++
Sbjct: 383 IDYDVCSNWGNWNYTAGVGNDGRGFRYFNIPKQAKDYDPEGKYVKHWLPELGKVPPAKVH 442
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
EPWK Q++ I DYPE I++ Q+ EN++
Sbjct: 443 EPWKLLPVEQDRFGVKIGVDYPEPIIDLWQSVKENEK 479
>gi|443927307|gb|ELU45814.1| cryptochrome-2 [Rhizoctonia solani AG-1 IA]
Length = 572
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 116/261 (44%), Gaps = 53/261 (20%)
Query: 176 YLSNQVSPDLTGPPTS-QSAALKFGCLSVRRFYWALHD--HFNTIHEGRPPSHF------ 226
++S D+T P T+ S LKFGC+ VR YW+ HD + +H SH
Sbjct: 286 HVSEDTQIDVTRPSTTLMSPYLKFGCVGVRECYWSWHDILVYVELHCPYDCSHIVPRNAP 345
Query: 227 -------NITGQLIWREYFYT----MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
N+ GQL E+ Y + ++ DQ+ P + HP E++L
Sbjct: 346 KSAKKPENLLGQL---EFSYIPWRCQTVYSDDGDQVIPRP-------KDDQHPQAEEWLA 395
Query: 276 AWKNGQTGYPFIDAVMRQLRR----------LLDC--TYCVCPVNFGRRLDP-DGIYIKR 322
AW G+TG+P+IDA+MRQLR + C T C +++ R + DG Y
Sbjct: 396 AWAEGRTGFPWIDALMRQLREEGWMHHLGRHSVACFLTRGQCYISWERGAEVFDGGY--- 452
Query: 323 YVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382
F YIYEPW AP VQ +A CII DYP +++ + N + ++
Sbjct: 453 -----SSFSY-YIYEPWLAPKSVQREAGCIIGIDYPAPMLDEKEEKNRNIERMRAAYQAG 506
Query: 383 IINKDYPERIVNHVQASLENK 403
+ D P+ + + L NK
Sbjct: 507 LYG-DSPKVLSGNAVIELPNK 526
>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
Length = 477
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 112/292 (38%), Gaps = 81/292 (27%)
Query: 129 PKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGP 188
P+P+ +PE W GE A +L + +Q + + G L + D T
Sbjct: 193 PEPDWAAAFPEY--------WTPGEDGAAARLRDFAAQAAQGYDRGRDLPGE---DRT-- 239
Query: 189 PTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
S L +G +S R+ + A+ + G+ H +++WRE+ Y H P
Sbjct: 240 -ARLSPHLHWGEVSPRQAWQAVAE------GGKSGGHITWLKEILWREFAYHTLWHRPEL 292
Query: 249 DQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------ 296
P PW P+ + L AW+ G+TGYP +DA +RQL R
Sbjct: 293 PDTPLRPEFAEFPWQPD-----DTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVV 347
Query: 297 ----------------------LLDCTYCVCPVNF----------------------GRR 312
L+D +N+ G +
Sbjct: 348 GSLLVKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEK 407
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
DP+G Y++ +VPEL + P ++++PW+A + A + DYP IV+H
Sbjct: 408 FDPEGRYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDH 459
>gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
Length = 528
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 169/443 (38%), Gaps = 104/443 (23%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSF 72
+ F+ +CL DL+ + S G L I G + + + + N + ++ + YQ
Sbjct: 72 WHFIHDCLTDLNTAVSSLGQPLVIKVGDVCAAIENIHSDYNVQGIYAHEETGNLWTYQRD 131
Query: 73 PTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE---SLQREVSLFQTV- 128
+N R + L P + V S S+ R + + +
Sbjct: 132 ---------------INVRKICELNNIPIHEYPLNGVVRKLASRNDWSVIRTKRMVEKIR 176
Query: 129 PKPEQFH--------KYPEMD---FGDPLIRWL--GGETEALIKLNERLSQEIESFKSGV 175
KP++ K P D FG+ + + GG A+ L L+ +S
Sbjct: 177 EKPKELKPLQRYISDKLPPKDDPMFGEEFVGTVQNGGRNAAVDDLRGFLNH-----RSSG 231
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWAL---HDHFNTIHE---GRPPSHFNI 228
YL + P L+ S+ SA L +G LSVR ++ NT + GR + FN
Sbjct: 232 YLRHISGPRLSAVYCSRLSAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFN- 290
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+L WR +F P + +P L E+ N+E+Y AW G TGYPFID
Sbjct: 291 -SRLAWRCHFIQKIEDQPSIETHCMHPA---FEGLRENDHNEERY-QAWATGHTGYPFID 345
Query: 289 AVMR---------------------------------QLRRL------------------ 297
A MR L RL
Sbjct: 346 ACMRNLIADGWITFRMRAMLVSFASYQLWLDWRVIGDHLARLFTDFEPGIHYSQLQMQSG 405
Query: 298 ---LDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
++ PV DP+G YI+++VPEL PI++I+EPW + + A+CI+
Sbjct: 406 VTGINAMRVYNPVKQSIEHDPNGDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILG 465
Query: 355 KDYPERIVNHVQASLENKQYLKK 377
Y E IV++ A+ + K+ L +
Sbjct: 466 TVYSEPIVDNASAAKDAKEKLAE 488
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 170/451 (37%), Gaps = 116/451 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +G S+ ++L+ + +C++
Sbjct: 39 TFSMGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEIRSLIEQLRITAVYWNICYD 98
Query: 61 QD-CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
D + + + G + CK + L + K++ +++ F + Q
Sbjct: 99 PDRLQSNQKMKMMLEG----KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQ 152
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEAL 157
+ Q +PKP K + +G+ P I W E A
Sbjct: 153 K-----QIIPKP--ISKVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAY 205
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+ S ++ + G +Q + P L FG +SVR Y H N
Sbjct: 206 KTFKKFFSSKLVFYSEGRDFPDQNVHSMLAP------YLSFGQISVRLMY---HYLINKS 256
Query: 218 HEGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
E R S F + QLIWRE+ Y + H P+ N + PW N+E+
Sbjct: 257 TE-RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPW-----NNEEE 310
Query: 273 YLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 311 LLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLL 370
Query: 305 ----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
P+ G + D +G YI+R+VPELR P +YI+
Sbjct: 371 DADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIH 430
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+PW+AP + +KAN + YP +V+H A
Sbjct: 431 KPWEAPEHILQKANIQLGHTYPLPVVDHKAA 461
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 170/451 (37%), Gaps = 116/451 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +G S+ ++L+ + +C++
Sbjct: 39 TFSMGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEIRSLIEQLRITAVYWNICYD 98
Query: 61 QD-CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
D + + + G + CK + L + K++ +++ F + Q
Sbjct: 99 PDRLQSNQKMKMMLEG----KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQ 152
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEAL 157
+ Q +PKP K + +G+ P I W E A
Sbjct: 153 K-----QIIPKP--ISKVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAY 205
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+ S ++ + G +Q + P L FG +SVR Y H N
Sbjct: 206 KTFKKFFSSKLVFYSEGRDFPDQNVHSMLAP------YLSFGQISVRLMY---HYLINKS 256
Query: 218 HEGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
E R S F + QLIWRE+ Y + H P+ N + PW N+E+
Sbjct: 257 TE-RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPW-----NNEEE 310
Query: 273 YLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 311 LLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLI 370
Query: 305 ----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
P+ G + D +G YI+R+VPELR P +YI+
Sbjct: 371 DADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIH 430
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+PW+AP + +KAN + YP +V+H A
Sbjct: 431 KPWEAPEHILQKANIQLGHTYPLPVVDHKAA 461
>gi|414085438|ref|YP_006994149.1| FAD binding domain of DNA photolyase family protein [Carnobacterium
maltaromaticum LMA28]
gi|412999025|emb|CCO12834.1| FAD binding domain of DNA photolyase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 362
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 107/266 (40%), Gaps = 74/266 (27%)
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT 216
+K +RL Q I SG+ +Q TS+ S L+ G LS+R Y +
Sbjct: 96 LKARKRLRQFI---SSGIEQYDQTRDFPAQKGTSRLSQFLRTGELSIREVY-------HR 145
Query: 217 IHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
I P S T +L WR+++ + NP +E N+ W + E+ L
Sbjct: 146 IKAEAPDSIGKETYLKELCWRDFYNMIYFENPQQQVLEIKEQYRNLQW-----NSDEQLL 200
Query: 275 NAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------------- 304
AWK GQTGYP +DA MRQL R++ ++ V
Sbjct: 201 QAWKTGQTGYPLVDAAMRQLNQTGWMHNRLRMIAASFLVKDLLMDWRLGEAYFAEKLIDY 260
Query: 305 --------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
P +R D G +I +YVPEL+ P Y++EP
Sbjct: 261 DAASNIGGWQWAASTGTDAVPYFRIFNPTTQSQRFDEAGDFIYKYVPELKGIPHAYLHEP 320
Query: 339 WKAPLGVQEKANCIISKDYPERIVNH 364
K PL +Q++ +I +DYP+ IV H
Sbjct: 321 SKMPLNIQQEKQIVIGEDYPQPIVQH 346
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 173/443 (39%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTQEKILSLVEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGMICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A E S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 319 DTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+ +VPEL+ P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIQLGHTYPLPVVDHKAA 461
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 112/463 (24%), Positives = 186/463 (40%), Gaps = 124/463 (26%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S GG L I +G P + +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQ 103
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK----------EDIDFRH--- 108
+ + + +N + LSG P + K +D+ F
Sbjct: 104 EVTAEE--------------LAVEKAVN-KALSGFPVQIKTFWTATLYHPDDLPFTIHQL 148
Query: 109 -VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWL 150
F + ++R + T P P++ K P++D+G+ ++ +
Sbjct: 149 PELFTNFRKQVERHWEIRTTYPTPKKLTKLPKIDWGNLPILNDLGLTEPILDQGGVLSFQ 208
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE ++ E + + +S K+ N++ T + SA L GCLS R Y +
Sbjct: 209 GGEMAGKSRVKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSCGCLSPRYIYEEV 265
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYF-YTMSAHNP---YYDQMEKNPICLNIPWLPES 266
+ T + S + + +L+WR++F + S H Y ++K LN+ WL +
Sbjct: 266 KKYEQT--RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYQSGLQK----LNLSWLEDW 319
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------RL---- 297
+ N W G+TGYP +DA MR+L RL
Sbjct: 320 -----ERFNLWCEGKTGYPLVDANMRELGATGFMSNRGRQNVASFLTKNLGIDWRLGAEW 374
Query: 298 ---LDCTYCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQF 330
L Y VC N+G R DP G Y++ ++PEL
Sbjct: 375 FESLLIDYDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQSRDYDPKGDYLRHWLPELALI 433
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
I+EP+K Q++ I+ +YP IV+ Q+ N++
Sbjct: 434 KGDKIHEPYKLFPEEQKRYAVILGVNYPRPIVDFFQSIKHNEK 476
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 170/451 (37%), Gaps = 116/451 (25%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +G S+ ++L+ + +C++
Sbjct: 39 TFSMGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEIRSLIEQLRITAVYWNICYD 98
Query: 61 QD-CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
D + + + G + CK + L + K++ +++ F + Q
Sbjct: 99 PDRLQSNQKMKMMLEG----KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQ 152
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLG--------GETEAL 157
+ Q +PKP K + +G+ P I W E A
Sbjct: 153 K-----QIIPKP--ISKVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAY 205
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+ S ++ + G +Q + P L FG +SVR Y H N
Sbjct: 206 KTFKKFFSSKLVFYSEGRDFPDQNVHSMLAP------YLSFGQISVRLMY---HYLINKS 256
Query: 218 HEGRPPSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
E R S F + QLIWRE+ Y + H P+ N + PW N+E+
Sbjct: 257 TE-RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPW-----NNEEE 310
Query: 273 YLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------- 304
L W+ G+TGYPFIDA M R+ ++ V
Sbjct: 311 LLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLL 370
Query: 305 ----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
P+ G + D +G YI+R+VPELR P +YI+
Sbjct: 371 DADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIH 430
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+PW+AP + +KAN + YP +V+H A
Sbjct: 431 KPWEAPEHILQKANIQLGHTYPLPVVDHKAA 461
>gi|389573401|ref|ZP_10163476.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. M 2-6]
gi|388427098|gb|EIL84908.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. M 2-6]
Length = 477
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 65/228 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S LK G +S+R + A+++ EG+ +L WR++++ + AH P + E
Sbjct: 242 SRFLKTGTISIRTIFHAVNEEELFEDEGKE----TFIKELAWRDFYHMIFAHYPEMKEKE 297
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------ 294
N +I W + E AW GQTG+P +DA MRQL
Sbjct: 298 INSSFQHIKW-----NDDETLFEAWCKGQTGFPLVDAGMRQLNEEGWMHNRLRMVTASFL 352
Query: 295 ----------------RRLLDCTYC----------------------VCPVNFGRRLDPD 316
R+L+D P +R DP
Sbjct: 353 TKDYFIDWRKGEAYFARKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRFDPS 412
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
G YI+RYVPEL+ ++I+EP K P+ Q K+ C++ YP V+H
Sbjct: 413 GEYIRRYVPELKHVNEKWIHEPSKMPIDEQMKSGCVLGDTYPLPTVDH 460
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 100/439 (22%), Positives = 168/439 (38%), Gaps = 92/439 (20%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTEEEILSLIEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D + CK + L + K++ +++ F + Q+
Sbjct: 99 PDRLQFNQKMKMMLED---KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A + S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPSSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y L +
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSTESQCSLFEKQ 267
Query: 226 FN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
N QLIWRE+ Y M H P+ N + PW N+++ L W+ G+TGY
Sbjct: 268 VNSFIRQLIWREFSYYMLYHYPFTAYKPLNKSFEHFPW-----NNEKELLRVWQKGETGY 322
Query: 285 PFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD--------- 316
PFIDA MR+L R+ ++ + P G + LD D
Sbjct: 323 PFIDAGMRELWQTGFMHNRTRMAVASFLIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 317 ----------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
G YI+++VPEL+ P +YI++PW+AP + +K
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQK 442
Query: 349 ANCIISKDYPERIVNHVQA 367
AN + YP +V+H A
Sbjct: 443 ANIQLGHTYPLPVVDHKAA 461
>gi|423413073|ref|ZP_17390193.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|423431142|ref|ZP_17408146.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
gi|401102633|gb|EJQ10619.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|401118167|gb|EJQ25999.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
Length = 476
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/442 (23%), Positives = 165/442 (37%), Gaps = 98/442 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QLK+ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQEI 168
+PKP + + +G+ P I W E +
Sbjct: 156 -----IPKP--ISRVQSIKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTF 208
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPSHF 226
+ F S +S D A L FG +SV+ + H N E R S F
Sbjct: 209 KKFFSSKLVSYSEGRDFPDQNVHSMLATYLSFGQISVKLMF---HYLINKSTE-RQCSLF 264
Query: 227 -----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
+ QLIWRE+ Y + H P+ N + PW E E+ L W+ G+
Sbjct: 265 EKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKE-----EELLRVWQKGE 319
Query: 282 TGYPFIDA---------VMRQLRRLLDCTYCV---------------------------- 304
TGYPFIDA M R+ ++ V
Sbjct: 320 TGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTM 379
Query: 305 -------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
P+ G + D +G YI+R+VPELR P +YI++PW+AP +
Sbjct: 380 GWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHI 439
Query: 346 QEKANCIISKDYPERIVNHVQA 367
+K+N + YP IV+H A
Sbjct: 440 LQKSNIKLGNTYPYPIVDHKAA 461
>gi|359148080|ref|ZP_09181316.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. S4]
gi|421739387|ref|ZP_16177699.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
gi|406692211|gb|EKC95920.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
Length = 457
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 157/423 (37%), Gaps = 99/423 (23%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
NR FL +CL DLD L+ GG+L I G + ++ E + ++ EGV +
Sbjct: 49 NRAAFLADCLTDLDHSLRERGGRLVIRSGDLVEEVCRVVTEADADEVHL---AEGVSAFA 105
Query: 71 SFPTGSHPPRYQPCKTLLNFRD--LSGLPP---RPKEDIDFRHVT--FGTMSES-LQREV 122
+ L + + LPP P F T F SE L+ +
Sbjct: 106 RRREERLREALESEGRRLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHPL 165
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWL------GGETEALIKLNERLSQEIESFKSGVY 176
+TV P+ GD +R + GGE+E +L L ++ +G Y
Sbjct: 166 GAPRTVRVPDGIGSEKVPARGD--VRGVSAGLAAGGESEGRDRLTAWLRRD-----AGAY 218
Query: 177 LSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
DL G TS+ S L FG LS H EG P+ F QL WR
Sbjct: 219 EDQH--DDLAGDATSRLSPHLHFGTLSAAELV-----HRARRKEGAGPAAF--VRQLCWR 269
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR 295
++ + + A P D + W + + E+ AW+ G+TGYP +DA MRQL
Sbjct: 270 DFHHQVLAARP--DASHADYRAREDHW--RTGRDAEQETEAWREGRTGYPIVDAAMRQLA 325
Query: 296 ---------RLLDCTY-------------------------------------------- 302
RLL ++
Sbjct: 326 HEGWMHNRGRLLAASFLSKTLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRP 385
Query: 303 --CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER 360
+ PV R DPDG Y++R+VPEL + ++EPW L ++A DYPE
Sbjct: 386 HRVLNPVRQAHRYDPDGAYVRRWVPELAGVEGKAVHEPWT--LEGFDRAGI----DYPEP 439
Query: 361 IVN 363
+V
Sbjct: 440 VVG 442
>gi|423655980|ref|ZP_17631279.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
gi|401292211|gb|EJR97875.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
Length = 476
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 167/444 (37%), Gaps = 102/444 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +G +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGD--------------PLIRWLGGETEALIKLNERLSQ 166
+V +PKP + + +G+ P I W E +
Sbjct: 154 QV-----IPKP--ISRVQSIKWGNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYK 206
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S +S D G A L FG +SV+ + H N E R S
Sbjct: 207 TFKKFFSSKLVSYSEGRDFPGQNVHSMLAPYLSFGQISVKLMF---HYLINKSTE-RQCS 262
Query: 225 HF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
F + QLIWRE+ Y + H P+ N N PW E E+ L W+
Sbjct: 263 LFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKE-----EELLRVWQK 317
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
G+TGYPFIDA M R+ ++ V
Sbjct: 318 GKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANN 377
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + D +G YI+R+VPELR P +YI++PW+AP
Sbjct: 378 TMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPE 437
Query: 344 GVQEKANCIISKDYPERIVNHVQA 367
+ +K+N + YP IV+H A
Sbjct: 438 HILQKSNIKLGDTYPFPIVDHKAA 461
>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
Length = 476
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 173/443 (39%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTQEEILSLVEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D ++ Q + CK + L + K++ +++ F + Q+
Sbjct: 99 PD--RLQSNQKMKMMLEH-KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A E S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 319 DTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+ +VPEL+ P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIQLGHTYPLPVVDHKAA 461
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 170/440 (38%), Gaps = 114/440 (25%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
+L + D+ +QL++ G L I +G +S+ ++L + +C++ D ++ Q
Sbjct: 49 WLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYDPD--RLQSNQ 106
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPK 130
+ CK + L + K++ +++ F + Q++V +PK
Sbjct: 107 KMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV-----IPK 158
Query: 131 P-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLSQEIES 170
P + H P + + + W E A + S ++ S
Sbjct: 159 PISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLAS 218
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF---- 226
+ G NQ + + P L FG +SV+ Y H N E R S F
Sbjct: 219 YSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQCSLFEKQV 268
Query: 227 -NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+ QLIWRE+ Y + H P+ Y + KN + PW E E+ L W+ G+TG
Sbjct: 269 NSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLRVWQKGETG 321
Query: 284 YPFIDA---------VMRQLRRLLDCTYCV------------------------------ 304
YPFIDA M R+ ++ V
Sbjct: 322 YPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGW 381
Query: 305 -----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
P+ G + D +G YI+++VPELR P +YI++PW+AP + +
Sbjct: 382 QWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQ 441
Query: 348 KANCIISKDYPERIVNHVQA 367
KAN + YP +V+H A
Sbjct: 442 KANIKLGNTYPLPVVDHKAA 461
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 77/228 (33%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
L+FG LS+R+ A+ + + EG +LIWRE++ H+P Q P
Sbjct: 284 LRFGTLSIRQ---AVALAWPSDSEGAA----TWLSELIWREFYQQFLWHHPETAQESFKP 336
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-- 304
N+P+ PN++ + AWK+GQTGYP +DA MRQL R++ ++ V
Sbjct: 337 AYKNLPF-----PNRDDWFQAWKDGQTGYPIVDAAMRQLNQSGYMHNRLRMISASFLVKD 391
Query: 305 -----------------------------------C----------PVNFGRRLDPDGIY 319
C P+ R+ DP+G +
Sbjct: 392 LLIDWRWGEQYFAQKLLDYDMASNVGGWQWAASTGCDAQPYFRIFNPITQSRKFDPEGQF 451
Query: 320 IKRYVPELRQFPIQYIYEPWKA---PLGVQEKANCIISKDYPERIVNH 364
I+RYVPEL Q I+ PW+A PL + + + YP IV+H
Sbjct: 452 IRRYVPELASLDKQAIHAPWQAKQLPLAFR------LGQHYPAPIVDH 493
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 170/440 (38%), Gaps = 114/440 (25%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
+L + D+ +QL++ G L I +G +S+ ++L + +C++ D ++ Q
Sbjct: 49 WLHHAVIDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYDPD--RLQSNQ 106
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPK 130
+ CK + L + K++ +++ F + Q++V +PK
Sbjct: 107 KMKMMLED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV-----IPK 158
Query: 131 P-------------------EQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLSQEIES 170
P + H P + + + W E A + S ++ S
Sbjct: 159 PISKVQSIKWGSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLAS 218
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF---- 226
+ G NQ + + P L FG +SV+ Y H N E R S F
Sbjct: 219 YSEGRDFPNQNAHSMLAP------YLSFGQISVKLMY---HYLINKSTE-RQCSLFEKQV 268
Query: 227 -NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+ QLIWRE+ Y + H P+ Y + KN + PW E E+ L W+ G+TG
Sbjct: 269 NSFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLRVWQKGETG 321
Query: 284 YPFIDA---------VMRQLRRLLDCTYCV------------------------------ 304
YPFIDA M R+ ++ V
Sbjct: 322 YPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGW 381
Query: 305 -----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
P+ G + D +G YI+++VPELR P +YI++PW+AP + +
Sbjct: 382 QWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQ 441
Query: 348 KANCIISKDYPERIVNHVQA 367
KAN + YP +V+H A
Sbjct: 442 KANIELGNTYPLPVVDHKAA 461
>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 476
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 104/443 (23%), Positives = 170/443 (38%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTQEEILSLVEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D + CK + L + K++ +++ F + Q+
Sbjct: 99 PDRLQFNQKMKMMLEH---KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A E S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y + H P+ N + PW N+E+ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKG 318
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
TGYPFIDA MR+L R+ ++ V P G + LD D
Sbjct: 319 DTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+ +VPEL+ P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIQLGHTYPLPVVDHKAA 461
>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 474
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 71/229 (31%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEK 253
L+ G +S+R Y A+ P S +L WR++++ + NP ++
Sbjct: 235 LRLGMVSIRTVYQAVSQA--------PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAI 286
Query: 254 NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV 304
++ W + +P K AWK GQTGYP IDA M+QL R++ ++
Sbjct: 287 QEAFRHLEW--DENPAAFK---AWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLT 341
Query: 305 CPVNFGRRL-----------------------------------------------DPDG 317
+ RL DPDG
Sbjct: 342 KDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDG 401
Query: 318 IYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+I+ Y+P L P Y+YEPWK P +QE CII KDYP +V+H +
Sbjct: 402 EFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAE 450
>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
Length = 478
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 115/293 (39%), Gaps = 81/293 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L L + S+ N+ D T + S L FG +S +
Sbjct: 204 WTPGEKGARARLRAWLDTDAASYDD---CRNRPDQDRT---SRLSPHLHFGEISPVVLW- 256
Query: 209 ALHDHFNTIHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEKNPIC---LNIPWL 263
H + + G P + ++ WRE+ Y + ++P M P+ + W
Sbjct: 257 --HSVSDAMEAGDIPKDQGTSFLSEIAWREFSYQLLYYHP---TMRDQPLMEKFTDFEW- 310
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQL----------------------------- 294
+K LNAW+ G+TGYP +DA MRQL
Sbjct: 311 ----DTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFLVKDLLLDWRDG 366
Query: 295 -RRLLDCTYCVCPVN-----------------FGR---------RLDPDGIYIKRYVPEL 327
R DC P N F R + DPDG YI+RYVPEL
Sbjct: 367 MRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPDGAYIRRYVPEL 426
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
R P ++I+EP KA + + A ++ + YP+ IV+H S KQ L + +A
Sbjct: 427 RDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDH---SDRRKQALSRYEA 476
>gi|409358086|ref|ZP_11236449.1| deoxyribodipyrimidine photo-lyase type I [Dietzia alimentaria 72]
Length = 449
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 79/282 (28%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE AL + L +++E + G + PDL + S LK+G + R +
Sbjct: 182 GEAAALARWRAFLEEDLEGYAEG-----RDRPDLD-TTSRLSVHLKYGEIHPRTILADIA 235
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
H ++ G F +L WRE++ + H P + +P+ + P +
Sbjct: 236 AH--PVNSGDGAKRF--VTELAWREFYADVLWHRPGSAWSDLRDALSGLPY--DEGPETD 289
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------ 304
++AW+ G+TGYPF+DA MRQL R++ ++ V
Sbjct: 290 ALVDAWREGRTGYPFVDAGMRQLLAEGWMHNRVRMVTASFLVKDLHVWWPVGARHFLDLL 349
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
PV G+R DP G Y++R+VPEL +
Sbjct: 350 IDGDIASNNHGWQWVAGTGTDASPFFRVFNPVTQGKRFDPRGDYVRRWVPELAHLGGDEV 409
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+EPW+A G K YPERIV+H + E ++ L +
Sbjct: 410 HEPWRAEHGYD--------KGYPERIVDHAE---ERREALHR 440
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 171/443 (38%), Gaps = 100/443 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T IG +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSIGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTEEEILSLIEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D + CK + L + K++ +++ F + Q+
Sbjct: 99 PDRLQFNQKMKMMLED---KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A + S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPSSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y H N E + S
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIY---HYLINKSTESQC-SL 263
Query: 226 F-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
F + QLIWRE+ Y M H P+ N + PW N+++ L W+ G
Sbjct: 264 FEKQVNSFIRQLIWREFSYYMLYHYPFTAYKPLNKSFEHFPW-----NNEKELLRVWQKG 318
Query: 281 QTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD----- 316
+TGYPFIDA MR+L R+ ++ + P G + LD D
Sbjct: 319 ETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHLLIPWQEGAKWFMDTLLDADIANNT 378
Query: 317 --------------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLG 344
G YI+ +VPEL+ P +YI++PW+AP
Sbjct: 379 MGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIREWVPELKDMPNKYIHKPWEAPEH 438
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ +KAN + YP +V+H A
Sbjct: 439 ILQKANIQLGHTYPLPVVDHKAA 461
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 119/293 (40%), Gaps = 75/293 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE A L L ++S+ +G Q P TS+ S LKFG +S R+ +
Sbjct: 202 WSPGEAGASGALRTFLDSHVDSYGNGRDFPAQ-------PNTSRLSPYLKFGEISPRQIW 254
Query: 208 W-ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
W A + + EG F ++ WRE+ + A P NP PW +S
Sbjct: 255 WTAQNTKQSNPDEGSSIDKF--LSEIGWREFCNHLVAQFPAMPDKAWNPKFEYFPW--QS 310
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
H ++ L+AW+ G TGYP IDA MR+L +
Sbjct: 311 H---QRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTKHLLMHWRVGEQW 367
Query: 297 ----LLD-------CTY---------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD C++ P+ G + D G+Y +R+VPEL +
Sbjct: 368 FWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGMYTRRWVPELAEL 427
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKEKA 380
P +Y+Y+PW+AP + A + YP IV+H A +LE LK A
Sbjct: 428 PDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYATLKNIDA 480
>gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
10542]
gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
10542]
Length = 450
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 165/437 (37%), Gaps = 132/437 (30%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R +LL L LD +S GG+L + +G+P + + RE+ + E +P
Sbjct: 48 GSPRRDYLLASLRALD---ESMGGRLVVRRGAPTEVLPAVAREVGARTVHV---AESFEP 101
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFG---------TMSESLQ 119
+ R + +T L ++D++ R T + +
Sbjct: 102 FGR-------ARDEEVETALA-----------EDDVELRRTGSAYAVSPGRVLTRTGTPY 143
Query: 120 REVSLFQTV------------PKPEQFHKYPEMDF----GDPLIRWLGGETEALIKLNER 163
R + F+T P + + P D G+PL GE AL + +E
Sbjct: 144 RVFTPFRTAWLDHGWCGPAQDPGEVDWAELPSEDLPEADGEPLR--PAGEEAALERWHEF 201
Query: 164 LSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
L +++ + N+ DLT + S LK+G + R L D N EG
Sbjct: 202 L-EDVAGYDDD---RNRPDLDLT---SRLSVPLKWGEIHPRTL---LADLKNLRDEG--- 248
Query: 224 SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+ +L WRE+ + H+P + + + W P S +++ AW G+TG
Sbjct: 249 -AASFRSELAWREFHADVLFHSPEAATLSIREVMPDDAWTPRSQ--ADRWFEAWTEGRTG 305
Query: 284 YPFIDAVMRQLR---------RLLDCTYCV------------------------------ 304
YP +DA MRQL R+L ++ V
Sbjct: 306 YPMVDAGMRQLLAEGWMHGRVRMLVGSFLVKDLHIPWQRGARHFMQHLLDADRSQNQLNW 365
Query: 305 -----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
PV G + DPDG Y++R+VPELR P + ++EPWK P
Sbjct: 366 QWVAGTGLDASPYFRIFNPVTQGLKFDPDGEYVRRWVPELRGIPGKAVHEPWKLP----- 420
Query: 348 KANCIISKDYPERIVNH 364
+DYP+++V+H
Sbjct: 421 ----TPPEDYPDQLVDH 433
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 127/301 (42%), Gaps = 37/301 (12%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R FLLE L +LD L++ G +L + +G P + +L E + + F +D E
Sbjct: 48 GAVRVAFLLESLRNLDENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFAL 107
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTV 128
+ +H + + F D P E + + T T+ R+ L Q +
Sbjct: 108 ARDARVRAH---LEGRCAVEGFDDGGLTAP---EAVRTKAGTPYTVFTPY-RQAVLAQPI 160
Query: 129 PKP---------------EQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKS 173
P+P + + ++ F + GGET A +L + + + +
Sbjct: 161 PRPRLAPAMLRTPADVPSDPWPSLKDLGFATSVSPPPGGETSAQARLQGFIQNGLARYAT 220
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI 233
+ +S D T + S L+FGCLS RR YWA + + EG P I +LI
Sbjct: 221 E---RDVLSADGT---SRLSPYLRFGCLSPRRAYWAARE---AVPEGSPGMESWI-AELI 270
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WR+++ + H PY + ++ W N + + W G+TG+P +DA MRQ
Sbjct: 271 WRDFYRQILFHFPYVETGAFRRAYDDLAW-----ENNASWFDLWCQGKTGFPIVDAAMRQ 325
Query: 294 L 294
L
Sbjct: 326 L 326
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P G++ DP G Y+++YVPELR P ++I+EP + P VQ C+I DYP +V+H
Sbjct: 394 PTAQGKKFDPTGAYVRQYVPELRAVPDRWIHEPSRMPPDVQRAFRCVIGVDYPAPLVDH 452
>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 457
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 162/446 (36%), Gaps = 126/446 (28%)
Query: 3 PGTMHIGY---NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG G+ NR FL +CLADLD L+ GG+L + G + E ++
Sbjct: 38 PGIGAAGFEAPNRCAFLADCLADLDASLRERGGRLVVRSGPVAQQVGAIAAECGAGEVHM 97
Query: 60 EQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
GV Y R + +T+L R G R D V G ++ +
Sbjct: 98 ---AAGVTRYARR-------REELLRTVLRER---GATLR-THDAVITVVAPGAVTPAGS 143
Query: 120 REVSLF-------------------QTVPKPEQFH--------KYPEMDFGDPLIRWLGG 152
S+F +TVP P H P + G P GG
Sbjct: 144 DHYSVFTPYFRRWSQQRLRDPCRAPRTVPVPVTMHGEPLPSRDAVPRISPGLPA----GG 199
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
E+ + ++ + ++++ + ++ D+T + S L FG LS
Sbjct: 200 ESAGRKRFHDWEASGLDAYD---VQHDSLAGDMT---SRLSPYLHFGALSPLELVREASA 253
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
H T E QL WR++ + + A P + P + W + + +
Sbjct: 254 HGGTGAEA-------FVRQLCWRDFHHQVMAARPASSVEDYRP--RHDRW--RTQDDAAE 302
Query: 273 YLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY--------------------- 302
+ AWK G TG+P +DA MRQLR RLL ++
Sbjct: 303 DITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLVASFLTKTLYVDWRIGARYFLDRLV 362
Query: 303 -------------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
+ PV G+R DP G Y++R+VPELR+ P ++E
Sbjct: 363 DGDIVNNQLNWQWVAGTGTDTRPHRVLNPVVQGKRFDPRGEYVRRWVPELREIPDGAVHE 422
Query: 338 PWKAPLGVQEKANCIISKDYPERIVN 363
PW+ P A+ DYP+ +++
Sbjct: 423 PWRLP------ADRRARLDYPDPLID 442
>gi|339327951|ref|YP_004687643.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
gi|338170552|gb|AEI81605.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
Length = 511
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/450 (22%), Positives = 164/450 (36%), Gaps = 100/450 (22%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L L R L GG L ++ + +L EL+ + D E +
Sbjct: 78 RVEFILRSLEPLRRTLTDAGGGLIVLDDTARDAIPRLAAELDAEAVFTNHDYEPAAKRRD 137
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRH----VTFGTMSESLQREVSLFQT 127
T + L F+D +D+ F + R V F
Sbjct: 138 --TAVSQALASDFRVLFTFKDQVIFE---ADDLMTGQGQPFSVFTPYKNAWLRGVQPFDL 192
Query: 128 ------------VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL-----NERLSQEIES 170
P P Q+ K P++ LG L+++ ++ +
Sbjct: 193 RPYPVDKYLGALAPVPRQYQKV------SPMLDDLGFAVSNLVEIAMPTGSDGARALFDE 246
Query: 171 F--KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
F + G Y + + P L GP + S L+FG +S+R A D + G + +
Sbjct: 247 FIDRIGDYGNRRDFPSLRGP-SYLSVHLRFGTISIRTLARAALD--AVLRGGSKSAGAAV 303
Query: 229 -TGQLIWREYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
+LIWR++++ + H+P D P + W+ ++Y AW + QTGYP
Sbjct: 304 WLSELIWRDFYFMILHHHPRVADGKSFRPEYDALRWVDSV--TGDRYFQAWCDAQTGYPL 361
Query: 287 IDAVMRQLR---------RLLDCTYCV--------------------------------- 304
+DA M Q+ R++ ++ V
Sbjct: 362 VDAAMLQIHQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWA 421
Query: 305 ----C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
C PV + DP G +I++Y+P L Q P +YI+ PW AP+ V A
Sbjct: 422 ASTGCDAQPYFRIFNPVMQSEKFDPQGRFIRKYLPVLAQMPDKYIHAPWTAPVNVLATAG 481
Query: 351 CIISKDYPERIVNHVQA---SLENKQYLKK 377
+ ++YP IV H A +LE +KK
Sbjct: 482 VKLGENYPPPIVQHDVARKETLERYAAIKK 511
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 170/450 (37%), Gaps = 114/450 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL-----------KREL 52
GT +G + +L L LD+ L+S+G +L + +G P + + L R
Sbjct: 47 GTGPLGPAQAWWLHHSLVSLDQSLQSYGSRLVLRRGPPGQVLRHLIEETGSKAVHWNRRY 106
Query: 53 NFTKLCFEQDCEGVKPYQSFPTGSHPP--RYQPCKTLLN----FR---------DLSGLP 97
+ + + + + + SH ++P K FR + G P
Sbjct: 107 DPSGMAIDAELKAALRSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEKQGDP 166
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P P E H + L T KP+ ++ E+ W GE A
Sbjct: 167 PPPVERPKTLHNPAHWPDSDRLEDWQLLPT--KPDWAKEFSEI--------WTPGEPGA- 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA---LHDH 213
++LSQ I+ G Y + + P L P TS S L G +S R + A L D
Sbjct: 216 ---QDKLSQFIDHGLKG-YRTQRDFPAL--PHTSGLSPHLALGEISPARIWHATIGLGDD 269
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+T + + +L+WRE+ Y + H N + PW ++
Sbjct: 270 VST------DDYVHFRKELVWREFSYHLLFHFADLASQNWNDRFNDFPW-----KKNAEF 318
Query: 274 LNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------------- 304
L+AW+ GQTGYP +DA MRQL R++ ++ +
Sbjct: 319 LSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVASFLIKDLMIDWREGEAWFRYTLVD 378
Query: 305 ---------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ + DPDG YI+++VPEL + P I+
Sbjct: 379 ADPASNAASWQWVAGSGADASPFFRIFNPITQSEKFDPDGDYIRQFVPELAKLPNNLIHR 438
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
P++AP + EKA + K YP +V+H +A
Sbjct: 439 PFEAPAPLLEKAGITLGKTYPAPLVDHKRA 468
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/439 (22%), Positives = 168/439 (38%), Gaps = 92/439 (20%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSP----ISIFQKLKRELNFTKLCFE 60
T +G +L + D+ +QL++ G L I +GS +S+ ++L + +C++
Sbjct: 39 TFSMGSASKWWLHHAIIDVKKQLEALGSTLIIRKGSTEEEILSLVEQLGITAVYWNICYD 98
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR 120
D + CK + L + K++ +++ F + Q+
Sbjct: 99 PDRLQFNQKMKMMLED---KGMICKEFNSHLLLEPWVIKKKDNTEYK--VFTPFYNAFQK 153
Query: 121 EV-----SLFQTVP---------KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLS 165
+V S Q++ + H P + + + W E A + S
Sbjct: 154 QVIHKPISKVQSIKGGNSLPVSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFS 213
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ S+ G NQ + + P L FG +SV+ Y L +
Sbjct: 214 SKLASYSEGRDFPNQNAHSMLAP------YLSFGQISVKLIYHYLINKSTESQCSLFEKQ 267
Query: 226 FN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
N QLIWRE+ Y + H P+ N + PW N+E+ L W+ G+TGY
Sbjct: 268 VNSFIRQLIWREFSYYLLYHYPFTAYKPLNKSFEHFPW-----NNEEELLRVWQKGETGY 322
Query: 285 PFIDAVMRQL---------RRLLDCTYCV----CPVNFGRR------LDPD--------- 316
PFIDA MR+L R+ ++ + P G + LD D
Sbjct: 323 PFIDAGMRELWQTGFMHNRTRMAVASFLIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQ 382
Query: 317 ----------------------------GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
G YI+++VPEL+ P +YI++PW+AP + +K
Sbjct: 383 WVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQK 442
Query: 349 ANCIISKDYPERIVNHVQA 367
AN + YP +V+H A
Sbjct: 443 ANIQLGHTYPLPVVDHKAA 461
>gi|407710068|ref|YP_006793932.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
gi|407238751|gb|AFT88949.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
Length = 499
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/442 (21%), Positives = 163/442 (36%), Gaps = 109/442 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK---- 67
R F+L L +LD L++ GG L ++ G P + KL +L + D E
Sbjct: 71 RVEFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERD 130
Query: 68 --PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLF 125
+ H R + + +L +P F + ++++ F
Sbjct: 131 EAVRERLAETGHAFRTFKDQVIFERAELLTGQKKP-------FTVFTPYKNAWLKQLTSF 183
Query: 126 QTVPKPEQFHKY------PEMDFGDPLIRWLGGETEALIKLN--------ERLSQEIESF 171
P P + + P ++ P + LG L +L+ +RL + +
Sbjct: 184 DLKPYPVETYATRLASLPPALNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFLT- 242
Query: 172 KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ 231
+ Y + P + GP + S L+FG +S+R H+ + +GR + + +
Sbjct: 243 RIDSYAERRDFPAVKGP-SYLSVHLRFGTVSIRTLARLAHE-MSLQPDGRGAATW--LSE 298
Query: 232 LIWREYFYTMSAHNPY----------YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
LIWR++++ + AH+P YD++ W E P + AW G+
Sbjct: 299 LIWRDFYFMILAHHPRLAGGASFKEEYDRLR---------W--EQGPEADAAFAAWCEGR 347
Query: 282 TGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRL------------------- 313
TGYP IDA M QL R++ ++ V + RL
Sbjct: 348 TGYPLIDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNG 407
Query: 314 ----------------------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
D DG +IKRY+P+L + P ++I+ PW A
Sbjct: 408 GWQWAASTGCDAQPYFRIFNPSTQSEKFDADGRFIKRYLPQLGKLPAKWIHAPWLAGAQR 467
Query: 346 QEKANCIISKDYPERIVNHVQA 367
+ + +YP IV+H A
Sbjct: 468 LAEFGVALGDNYPAPIVDHAHA 489
>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 476
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QL++ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDIKKQLEALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPTSKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ + G NQ + + P L FG + V+ Y H N E R
Sbjct: 211 FFSSKLAFYSEGRDFPNQNAHSMLAP------YLSFGQIPVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
S F + QLIWRE+ Y + H P+ Y + KN + PW E E+ L
Sbjct: 261 CSLFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLISWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+++VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V+H A
Sbjct: 434 EAPEHILQKANIKLGHTYPLPVVDHKAA 461
>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
[Cupriavidus taiwanensis LMG 19424]
gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Cupriavidus taiwanensis LMG 19424]
Length = 519
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 66/267 (24%)
Query: 172 KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TG 230
+ G Y + P L GP + S L+FG +S+R H+ + G + +
Sbjct: 245 RMGDYGRRRDYPALRGP-SYLSVHLRFGTISIRTLARVAHE--AMLRGGADSAGAAVWLS 301
Query: 231 QLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
+LIWR++++ + H+P +P I W + E+Y +AW++ TGYP IDA
Sbjct: 302 ELIWRDFYFMILHHHPRVAAGAAFHPAYDAIRW--QDGDTGERYFHAWRDAATGYPLIDA 359
Query: 290 VMRQLR---------RLLDCTYCV------------------------------------ 304
M Q+R R++ ++ V
Sbjct: 360 AMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAAST 419
Query: 305 -C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
C PV ++ DP G +I++Y+P+L P +Y++ PW AP V +A +
Sbjct: 420 GCDAQPWFRIFNPVTQSQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRL 479
Query: 354 SKDYPERIVNHVQASLENKQYLKKEKA 380
+YP +V H + +Q L++ +A
Sbjct: 480 GDNYPRPLVQH---DVARQQTLRRYEA 503
>gi|407776584|ref|ZP_11123857.1| DNA photolyase [Nitratireductor pacificus pht-3B]
gi|407301875|gb|EKF20994.1| DNA photolyase [Nitratireductor pacificus pht-3B]
Length = 487
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 108/295 (36%), Gaps = 74/295 (25%)
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
G +W GE A ERL + +G V D +S S L G +S
Sbjct: 207 GGLAAQWTPGEAGA----RERLDAFLAGGGTGYDRRRDVLADAG--TSSLSPHLAHGEIS 260
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
W + HE +L WRE+ + + HNP N PW
Sbjct: 261 P----WQIWSALEAGHELPAGDAQTFRKELGWREFCWHLLFHNPDLATRNFNRDFDAFPW 316
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+K L AW+ GQTGYP +DA MRQL +
Sbjct: 317 -----QRDDKALRAWQRGQTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVKDLRLDWRS 371
Query: 297 --------LLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPE 326
L+D P N+ G + DPDG Y+ R+VPE
Sbjct: 372 GEEWFWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGEKFDPDGAYVHRFVPE 431
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKE 378
LR P +YI++PW A +A + + YP +V+H A +L+ + +++E
Sbjct: 432 LRNLPKRYIHKPWNATAAALSEAGIRLGETYPAPMVDHGTARQIALDGYRVIREE 486
>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
Length = 493
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/438 (22%), Positives = 172/438 (39%), Gaps = 101/438 (23%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+L L +LD L++ GG L ++ G P + KL EL + D E +
Sbjct: 65 RVEFILASLRELDDALRAQGGGLIVLYGDPADLVPKLADELRVDAVFANHDYEPAAIERD 124
Query: 72 FPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ + L F+D L+G ++ F F + +++
Sbjct: 125 ETVRERLA--EAGRACLTFKDQVIFERAELLTG------QNKPF--TVFTPYKNAWLKQL 174
Query: 123 SLFQTVPKPEQFHKY------PEMDFGDPLIRWLGGETEALIKLN--------ERLSQEI 168
+ F P P + + P ++ P + LG L +L+ +RL +
Sbjct: 175 TSFYLKPYPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDF 234
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
+ + Y + P GP + S L+FG +S+R H+ + +GR + +
Sbjct: 235 VT-RIASYAERRDFPAARGP-SYLSVHLRFGTVSIRTLARLAHE-ISLQPDGRGAATW-- 289
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLN-IPWLPESHPNKEKYLNAWKNGQTGYPFI 287
+LIWR++++ + +H+P + + W E P + AW G+TGYP I
Sbjct: 290 LSELIWRDFYFMILSHHPRLASGASFKQEYDALRW--EQGPAADAAFAAWCEGRTGYPLI 347
Query: 288 DAVMRQLR---------RLLDCTYCV---------------------------------- 304
DA M QL R++ ++ V
Sbjct: 348 DAAMLQLNRTGYMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAA 407
Query: 305 ---C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA-- 349
C P+ + D DG +IKRY+P+L + P ++++ PW A G Q+ A
Sbjct: 408 STGCDAQPYFRIFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAPWLA--GAQKLAAF 465
Query: 350 NCIISKDYPERIVNHVQA 367
++ +DYP+ IV+H QA
Sbjct: 466 GVVLGEDYPQPIVDHAQA 483
>gi|374711980|gb|AEZ64510.1| deoxyribodipyrimidine photolyase [Streptomyces chromofuscus]
Length = 461
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 158/431 (36%), Gaps = 103/431 (23%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
NR FL +CL DLD L+ GG+L + G + +++ R T GV +
Sbjct: 49 NRRAFLADCLRDLDAGLRERGGRLVVRSGE---VAEEVCRVAAGTGARDVYVAGGVSGHA 105
Query: 71 SFPTGSHPPRYQPCKTLLNFRD--LSGLPP---RPKEDIDFRHVTFGTMSESLQRE---- 121
G + L+ D ++ + P P + F RE
Sbjct: 106 LRREGRLRGALESQGRRLHVHDAVVTAVAPGAVTPAGSGTDHYAVFTPYFRRWSRERIRD 165
Query: 122 -VSLFQTVPKPEQFHKYPEMDFGD---PLIRWLGGETEALIKLNERLSQEIESF--KSGV 175
+ +TVP P D G P + G +E L + ER ++ + ++G+
Sbjct: 166 PLDAPRTVPVPR--------DVGSEALPSRAEVSGVSEGLAEGGERAARRRLTAWRRTGL 217
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRP---PSHFNITGQ 231
DL G TS+ S L FG LS +H R P Q
Sbjct: 218 ARYEDRHDDLAGDATSRLSPHLHFGTLSP----------AELVHRARAAGGPGADAFVRQ 267
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291
L WR++ + + A P + + + W + E + AWK G+TGYP +DA M
Sbjct: 268 LCWRDFHHQVLAARPSAARTDYR--TRHDRWRTGATAAAE--IEAWKAGRTGYPVVDAAM 323
Query: 292 RQLR---------RLLDCTYCV-------------------------------------- 304
RQLR RLL ++ V
Sbjct: 324 RQLRHEGWMHNRGRLLTASFLVKTLYVDWRVGARHFLDLLVDGDIANNQLNWQWVAGTGT 383
Query: 305 --------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV G+R DPDG Y++R+VPELR ++EPW+A E+A D
Sbjct: 384 DSRPHRVLNPVVQGKRYDPDGGYVRRWVPELRGIEGGAVHEPWRARGRGAERARY----D 439
Query: 357 YPERIVNHVQA 367
YPE +V +A
Sbjct: 440 YPEPLVELSEA 450
>gi|423636149|ref|ZP_17611802.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
gi|401276137|gb|EJR82094.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 170/448 (37%), Gaps = 110/448 (24%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QL++ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDIKKQLEALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPTSKVQSIKWGSSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ + G NQ + + P L FG + V+ Y H N E R
Sbjct: 211 FFSSKLAFYSEGRDFPNQNAHSMLAP------YLSFGQIPVKLMY---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPY--YDQMEKNPICLNIPWLPESHPNKEKYLN 275
S F + QLIWRE+ Y + H P+ Y + KN + PW E E+ L
Sbjct: 261 CSLFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKN--FEHFPWNKE-----EELLR 313
Query: 276 AWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV---------------------- 304
W+ G+TGYPFIDA M R+ ++ V
Sbjct: 314 VWQRGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLISWQEGAKWFMDTLLDAD 373
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P+ G + D +G YI+++VPELR P +YI++PW
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPW 433
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
+AP + +KAN + YP +V+H A
Sbjct: 434 EAPEHILQKANIKLGHTYPLPVVDHKAA 461
>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|337741487|ref|YP_004633215.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
gi|386030503|ref|YP_005951278.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|336095571|gb|AEI03397.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|336099151|gb|AEI06974.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
Length = 487
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 111/280 (39%), Gaps = 76/280 (27%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRF 206
RW GE A KL+ L I+ + SG DL TS SA L+FG +S R+
Sbjct: 211 RWKPGEAGARKKLDAFLDDAIDGYASG-------RDDLARDQTSHLSAHLRFGEISPRQV 263
Query: 207 YWALHDHFNTIHEGRPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
+ A F H P ++ +L WRE+ + P + + P N PW
Sbjct: 264 FHATR--FAAAHN--PALSHDVEKFLSELGWREFCRHLLFDQPDLHRQDLQPSFDNFPWR 319
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV---------- 304
+ L+AW+ G+TGYP +DA MR+L R++ ++ V
Sbjct: 320 TD-----RAALSAWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVAASFLVKHLLIDWREG 374
Query: 305 -------------------------C------------PVNFGRRLDPDGIYIKRYVPEL 327
C PV G + DPDG Y+ ++VPEL
Sbjct: 375 ERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEKFDPDGAYVMKWVPEL 434
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+ P + I++PW+A A + K YP IV+H A
Sbjct: 435 AKLPPKLIHQPWEATPMELAAAGITLGKTYPAPIVDHKAA 474
>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
Length = 493
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 63/237 (26%)
Query: 189 PTSQSAALKFGCLSVRRFY-WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
P+ S L+FG +S+RR A + H+ + + +LIWR++++ + AH+P+
Sbjct: 247 PSYLSVHLRFGTVSIRRLARLAWEQTQSQPHDAEGAATW--LSELIWRDFYFQILAHHPH 304
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
P I W ++ P + AW G+TGYP +DA MRQL R++
Sbjct: 305 VVHASFKPAYDAIVW--DTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLRMV 362
Query: 299 DCTYCV-------------------------------------C----------PVNFGR 311
++ V C PV +
Sbjct: 363 AASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQ 422
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVNHVQA 367
+ D D +I+RYVPEL + P + PW+A PL + E A ++ DYP +V+H A
Sbjct: 423 KFDADARFIERYVPELARLPAALRHAPWQARPLELAE-AGVVLGTDYPHPVVDHAAA 478
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/425 (21%), Positives = 164/425 (38%), Gaps = 88/425 (20%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L L+ L L G L + +G + +L ++ K+ + + E PY+ T
Sbjct: 49 WLYHSLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYE--PPYREIDT 106
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF 134
R P + L P + K + F + + + +T+ P++F
Sbjct: 107 YLEN-RLPPLSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKF 165
Query: 135 HKYPEM---------------DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
++ + D+ +W GE A I L + + + +++ Y ++
Sbjct: 166 SQHRAIKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKN-----YPAH 220
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TGQLIWREYF 238
+ PD++ + S L FG +S+R+ + A+ TI + ++ QLIWRE+
Sbjct: 221 RDRPDISST-SHLSPYLHFGEISIRQVWTAITQ--ATIQDKNLQKAADVFLRQLIWREFA 277
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--- 295
Y + H P + N W + +L AW+ TGYP +DA MR+L
Sbjct: 278 YYLLWHFPQMGKSNFRNQFDNFKW-----KKNKNWLRAWQKWLTGYPIVDAGMRELWCTG 332
Query: 296 ------RLLDCTYCV-----------------------------------C--------- 305
R++ ++ V C
Sbjct: 333 YMHNRVRMIVASFLVKDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFR 392
Query: 306 ---PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
P+ ++ DPDG YIKR++PEL + P +YI+ P P + E + + DYP IV
Sbjct: 393 IFNPILQSKKFDPDGTYIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIV 452
Query: 363 NHVQA 367
NH +A
Sbjct: 453 NHHKA 457
>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
Length = 473
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 86/309 (27%)
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYL 177
+ +S+ + +PK K+ + + DP E EA L E ++ +IE + +
Sbjct: 178 FKNSISIKEILPKKNWHKKFEK--YWDP------SEKEAKKYLQELINNKIEDYGDARDI 229
Query: 178 SNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREY 237
P + G + S LKFG + V + D + + + +L WRE+
Sbjct: 230 -----PGVNGT-SKLSPFLKFGQIHVETIWKKCQDI-----KVKKIGYRKYINELGWREF 278
Query: 238 FYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+++ Y+ QM K + N PW+ +K+L AWK G TGYP +DA MR+L
Sbjct: 279 SHSLIN---YFPQMLKGNLRKDFDNFPWVKN-----DKFLKAWKAGMTGYPIVDAGMREL 330
Query: 295 R---------RLLDCTYCV----------------CPVNF-------------------- 309
R++ ++ V C V++
Sbjct: 331 YETGWMHNRVRMIVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAA 390
Query: 310 -----------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
G + D GIY K++VPEL+ P +++Y+PW+ QE+ I+ +YP
Sbjct: 391 PYFRIFNPILQGEKFDKAGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYP 450
Query: 359 ERIVNHVQA 367
+ IV+HV+A
Sbjct: 451 KPIVDHVEA 459
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/453 (22%), Positives = 173/453 (38%), Gaps = 106/453 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G + +FLL+ + +L + L+ G L + +G P I ++ +EL + F Q
Sbjct: 52 FPKT---GNFKSQFLLQSIDNLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQ 108
Query: 62 DC--EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV----TFGTMS 115
+ E +K T Q L F + P +D+ F F
Sbjct: 109 EVTSEEIK----VETALEKALTQMGVQLNPFWGTTLYHP---DDLPFTLAEIPELFTNFR 161
Query: 116 ESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALI 158
+ ++++ + T P P++ P +D G+ ++ ++GGE+E +
Sbjct: 162 KQVEKKSLINSTFPTPKKLPSLPNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIK 221
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNT 216
+LN+ Q K+ + + ++ G S S L GCLS R Y + +
Sbjct: 222 RLNQYFWQ-----KNRLKDYKETRNEMLGSDYSSKFSPWLALGCLSPRYIYEEVTKY--E 274
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--L 274
+ + S + + +L+WR+YF + A + LN+PW KE +
Sbjct: 275 LERVKNDSTYWLIFELLWRDYFRFICAKHGNKVFYSSGLQGLNLPW-------KEDWQRF 327
Query: 275 NAWKNGQTGYPFIDAVMRQLRR----------------------------------LLDC 300
W+ G TGYP +DA MR+L L+D
Sbjct: 328 QLWQTGNTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDY 387
Query: 301 TYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
C N+ + DP G Y++ ++PEL+ P I+EPW
Sbjct: 388 DVCSNYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPW 447
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENK 372
K Q++ + DYP IV+ ++ N+
Sbjct: 448 KLSQAEQKQYRVNLGVDYPRPIVDFFKSIKANE 480
>gi|386317413|ref|YP_006013577.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495305|ref|YP_006905151.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417752618|ref|ZP_12400804.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771615|gb|EGL48541.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|410440465|emb|CCI63093.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 474
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 71/229 (31%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEK 253
L+ G +S+R Y A+ P S +L WR++++ + NP ++
Sbjct: 235 LRLGMVSIRTVYQAVSQA--------PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAI 286
Query: 254 NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV 304
++ W + +P K AWK GQTGYP IDA M+QL R++ ++
Sbjct: 287 QEAFRHLEW--DENPAAFK---AWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLT 341
Query: 305 CPVNFGRRL-----------------------------------------------DPDG 317
+ RL DPDG
Sbjct: 342 KDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDG 401
Query: 318 IYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+I+ Y+P L P Y+YEPWK P +QE CII +DYP +V+H +
Sbjct: 402 EFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAE 450
>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
Length = 476
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/446 (22%), Positives = 167/446 (37%), Gaps = 106/446 (23%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ--D 62
T IG +L + D+ +QL++ G L I +G+ L ++L+ T + + D
Sbjct: 39 TFSIGSAAKWWLHHAIIDVQKQLEALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYD 98
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ +K Q + CK + L + K++ +++ F + Q++V
Sbjct: 99 PDRLKSNQKMKMILED-KGIICKEFNSHLLLEPWIIKKKDNTEYK--VFTPFYNAFQKQV 155
Query: 123 SLFQTVPKP-------------------EQFHKYPEMDFGDPL-IRWLGGETEALIKLNE 162
+PKP + H P + + + W E A +
Sbjct: 156 -----IPKPISRVQSIKWGSSLPTSLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKK 210
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
S ++ S+ G +Q + P L F +SV+ + H N E R
Sbjct: 211 FFSSKLVSYSEGRDFPDQNVHSMLAP------YLSFSQISVKLMF---HYLINKSTE-RQ 260
Query: 223 PSHF-----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
S F + QLIWRE+ Y + H P+ N + PW E E+ L W
Sbjct: 261 CSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNKE-----EELLRVW 315
Query: 278 KNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------------------ 304
+ G+TGYPFIDA M R+ ++ V
Sbjct: 316 QKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIA 375
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+++VPELR P +YI++PW+A
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEA 435
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA 367
P + +KAN + YP IV+H A
Sbjct: 436 PEHILQKANIKLGNTYPYPIVDHKAA 461
>gi|379136508|gb|AFC93483.1| cryptochrome 1, partial [Gadus morhua]
Length = 109
Score = 82.8 bits (203), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 7/75 (9%)
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
PP ++ GQL+WRE+FYT S P +D+M NP+C I W ++ P +YL+AWK +
Sbjct: 6 PP--VSLHGQLLWREFFYTASVGVPNFDRMLDNPVCTQIDW--DTXP---EYLSAWKEAR 58
Query: 282 TGYPFIDAVMRQLRR 296
TG+PFIDA+M QLRR
Sbjct: 59 TGFPFIDAIMTQLRR 73
>gi|408402028|ref|YP_006859992.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968257|dbj|BAM61495.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 474
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 71/229 (31%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEK 253
L+ G +S+R Y A+ P S +L WR++++ + NP ++
Sbjct: 235 LRLGMVSIRTVYQAVSQA--------PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAI 286
Query: 254 NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV 304
++ W + +P K AWK GQTGYP IDA M+QL R++ ++
Sbjct: 287 QEAFRHLEW--DENPAAFK---AWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLT 341
Query: 305 CPVNFGRRL-----------------------------------------------DPDG 317
+ RL DPDG
Sbjct: 342 KDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDG 401
Query: 318 IYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+I+ Y+P L P Y+YEPWK P +QE CII +DYP +V+H +
Sbjct: 402 EFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAE 450
>gi|407977733|ref|ZP_11158570.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. HYC-10]
gi|407415986|gb|EKF37567.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. HYC-10]
Length = 477
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 65/228 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S LK G +S+R + A+++ EGR +L WR++++ + AH P Q E
Sbjct: 242 SRFLKTGTISIRTVFHAINEEALYEDEGRE----TFIKELAWRDFYHMIFAHYPKMKQKE 297
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
NP I W + E AW G+TG+P +DA MRQL R++ ++
Sbjct: 298 INPSFEGIKWNED-----EALFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFL 352
Query: 304 V---------CPVNFGRRL--------------------------------------DPD 316
F ++L D
Sbjct: 353 TKDYLIDWRKGEAYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRFDSS 412
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
G YI+RYVPEL+ ++I+EP K P+ Q K+ C+I YP V+H
Sbjct: 413 GEYIRRYVPELKHVDEKWIHEPSKMPIDEQMKSGCVIGDTYPLPTVDH 460
>gi|333916551|ref|YP_004490283.1| deoxyribodipyrimidine photo-lyase [Delftia sp. Cs1-4]
gi|333746751|gb|AEF91928.1| Deoxyribodipyrimidine photo-lyase [Delftia sp. Cs1-4]
Length = 493
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 63/237 (26%)
Query: 189 PTSQSAALKFGCLSVRRFY-WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
P+ S L+FG +S+RR A + H+ + + +LIWR++++ + AH+P+
Sbjct: 247 PSYLSVHLRFGTVSIRRLARLAWEQTQSQPHDAEGAATW--LSELIWRDFYFQILAHHPH 304
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
P I W ++ P + AW G+TGYP +DA MRQL R++
Sbjct: 305 VVHASFKPAYDAIVW--DTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLRMV 362
Query: 299 DCTYCV-------------------------------------C----------PVNFGR 311
++ V C P+ +
Sbjct: 363 AASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPITQSQ 422
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVNHVQA 367
+ D D +I+RYVPEL + P + PW+A PL + E A ++ DYP +V+H A
Sbjct: 423 KFDADARFIERYVPELARLPAALRHAPWQARPLELAE-AGVVLGTDYPHPVVDHAAA 478
>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
Length = 479
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 107/275 (38%), Gaps = 66/275 (24%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSG---VYLSNQVSPDLTGPPTSQSAALKFGCLSVRR 205
W GG E+ I + + +F G Y + + PD+ + S L+FG LS ++
Sbjct: 195 WAGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRDRPDME-HTSRLSPYLRFGHLSPQQ 253
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
A+ H E R +L WRE+ Y + H P Q+ N W +
Sbjct: 254 VLAAVR-HAADAGEVRGTDVEKFVSELYWREFSYHLLFHFPDLAQVNFNRRFDGFEWNQD 312
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------ 304
+ K AW+ G TGYP IDA MRQL R++ ++ +
Sbjct: 313 A-----KIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRMVAASFLIKHALVDWRRGEV 367
Query: 305 -----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
PV G + DPDG Y++R+VPEL
Sbjct: 368 WFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQGEKFDPDGAYVRRFVPELAG 427
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P I++PW+AP V +A + + YP IV+H
Sbjct: 428 LPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDH 462
>gi|417927065|ref|ZP_12570453.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340764939|gb|EGR87465.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 474
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 71/229 (31%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEK 253
L+ G +S+R Y A+ P S +L WR++++ + NP ++
Sbjct: 235 LRLGMVSIRTVYQAVSQA--------PASSGQAVFLKELAWRDFYHMVYVANPNQKKLAI 286
Query: 254 NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV 304
++ W + +P K AWK GQTGYP IDA M+QL R++ ++
Sbjct: 287 QEAFRHLEW--DENPAAFK---AWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLT 341
Query: 305 CPVNFGRRL-----------------------------------------------DPDG 317
+ RL DPDG
Sbjct: 342 KDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDG 401
Query: 318 IYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+I+ Y+P L P Y+YEPWK P +QE CII +DYP +V+H +
Sbjct: 402 EFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAE 450
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 164/451 (36%), Gaps = 102/451 (22%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H G R F+L+ L L ++ G L I +G P S+ +L E K+ + +D G+
Sbjct: 40 HAGPPRVAFMLDALDSLREWYRNRGSDLVIAEGDPTSVLPELATEYGAEKVTWGKDYSGL 99
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV--TFGTMSESLQREVSL 124
+ + + L D D V FG ++EV
Sbjct: 100 ARERDAAVRQALDDADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDREKEVPY 159
Query: 125 FQTVPKPEQFHKYPEMDFGD--PLIRWLG-----------GETEALIKLNERLSQEIESF 171
P + E+D GD P + LG G EA LN+ L + + +
Sbjct: 160 -----DPPSTDELAEVD-GDALPTLADLGFEEPEADVPPAGTDEARALLNDFLDENVYEY 213
Query: 172 KSGV-YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN--- 227
+ + +++ + L SA LKFG + +R Y D EG +H
Sbjct: 214 EERRDFPADECTSRL-------SAHLKFGTIGIREVY----DRTQDAKEGAGGNHHESVR 262
Query: 228 -ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
QL WRE++ + +P+ +I W N E+ L AWK+G+TGYP
Sbjct: 263 EFQSQLAWREFYTQVLFAHPHVVTSNYKSYENSIEW-----ENDEELLQAWKDGETGYPI 317
Query: 287 IDAVMRQLRR--------------------LLDCTY------------------------ 302
+DA MRQLR L+D Y
Sbjct: 318 VDAGMRQLRAEAYMHNRVRMIVASFLTKDLLIDWRYGYEWFREKLVDHDTANDNGGWQWA 377
Query: 303 ------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
P+ G DPD YIK+YVPELR + I++ + L + A
Sbjct: 378 ASTGTDAQPYFRIFNPMTQGEDYDPDAEYIKKYVPELRDAASEVIHDWNECSLTQRRNA- 436
Query: 351 CIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+ +YP+ +V+H + + K+ + +
Sbjct: 437 ---APEYPDPVVDHGERREQALAMFKRARGD 464
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 79/193 (40%), Gaps = 61/193 (31%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+L+WRE+ + H P + P PW H N K+L AW+ GQTGYP +DA
Sbjct: 280 ELLWREFSAGLLFHFPELPEEPFRPEFSAFPW----HGNA-KHLKAWQTGQTGYPIVDAG 334
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MR+L R++ ++ +
Sbjct: 335 MRELWATGYMHNRVRMITASFLIKHLLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSG 394
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
PV G + DPDG Y++R+VPEL + P Q I+ PWKA G +A +
Sbjct: 395 ADAAPYFRIFNPVLQGEKFDPDGDYVRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLG 454
Query: 355 KDYPERIVNHVQA 367
K YP IV H +A
Sbjct: 455 KSYPNPIVEHGEA 467
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/453 (21%), Positives = 174/453 (38%), Gaps = 104/453 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL ++S G L + +G P ++ L +EL+ T + F Q
Sbjct: 50 FPKT---GAFRAKFLLESVADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQ 106
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT----FGTMSES 117
+ + + + + T+ F + P +D+ F + F +
Sbjct: 107 EVTSEE--VAVESALKNALSEIGITVQTFWGSTLYHP---DDLPFNLLKIPELFTNFRKQ 161
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALIKL 160
++++ +++ P P++ P ++ G+ ++ + GGET L +L
Sbjct: 162 VEKKSTIYPPFPTPKRLPSLPSVEVGELPQLADFGLESPIFDERAVLPFQGGETAGLARL 221
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIH 218
N+ + K + + Q + G S S L GCLS R +
Sbjct: 222 NDYFWK-----KDCLKVYKQTRNGMLGSDYSSKFSPWLALGCLSPR--FIYEQVQQYEQE 274
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--LNA 276
+ + S + + +LIWR++F + A + + IPW KE +
Sbjct: 275 QIKNDSTYWLVFELIWRDFFRFICAKHGNRIFRPSGLQGIPIPW-------KEDWDRFTL 327
Query: 277 WKNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCV 304
W+ G+TG+P IDA MR+L L Y V
Sbjct: 328 WQQGKTGFPLIDANMRELAATGFMSNRGRQNVASFLTKNLGINWQIGAEWFESLLIDYDV 387
Query: 305 CPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
C N+G + DP G Y+K ++PEL P +++PW
Sbjct: 388 CS-NWGNWNYTAGVGNDARGFRYFNIQKQSKDYDPQGYYVKHWLPELNSLPAAKVHQPWT 446
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
Q++ + DYP +V+ +++ N++
Sbjct: 447 LTSAEQKQFGVRLGVDYPNPVVDLMESVKANEK 479
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 72/252 (28%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQ 231
Y ++ P + G + S L FG LS+R+ + A +G PPS T +
Sbjct: 223 AAYEKDRDLPSIKGT-SRLSPFLSFGQLSIRKVWAAC--------QGMPPSTGKATFLKE 273
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291
L WR++++ + +P E N+ W + E+ N W+ GQTGYP IDA M
Sbjct: 274 LAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKD-----EEAFNKWQAGQTGYPIIDAAM 328
Query: 292 RQL----------------------------------RRLLDCTYC-------------- 303
RQL R+L+D
Sbjct: 329 RQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGT 388
Query: 304 --------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISK 355
P+ G++ D +G +IK++VPEL Q P+++I+EP+ Q ++
Sbjct: 389 DAVPYFRIFNPITQGKKFDKEGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGT 448
Query: 356 DYPERIVNHVQA 367
DYP IV+H +A
Sbjct: 449 DYPLPIVDHNEA 460
>gi|386334355|ref|YP_006030526.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
gi|334196805|gb|AEG69990.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
Length = 548
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R A H +H R + + +LIWR
Sbjct: 279 YHARRDYPAMRGP-SYLSTHLRFGTVSIRTL--AARAHAAMLHGSRGAATW--LSELIWR 333
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
++++ + H P + P I W+ E ++ AW++ +TGYP +DA M Q+
Sbjct: 334 DFYFMILHHRPDLAEGASFRPEFDRIRWV-EGETGDARF-AAWRDARTGYPLVDAAMLQI 391
Query: 295 R---------RLLDCTYCV-------------------------------------C--- 305
R R++ ++ + C
Sbjct: 392 RQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDLAANNGGWQWAASSGCDAQ 451
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +Y++ PW AP V + A + + YP
Sbjct: 452 PWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYP 511
Query: 359 ERIVNHV---QASLENKQYLKKEKAN 381
IV H A+LE K E+ +
Sbjct: 512 RPIVEHAAARAATLERYAPAKVERTS 537
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 116/297 (39%), Gaps = 88/297 (29%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GE AL KL + S+ ++ Y ++ P + G TSQ S L G LS R+
Sbjct: 203 AGEHAALAKLRQFCSERVQD-----YQRDRDIPAIDG--TSQLSPYLALGVLSPRQCVNR 255
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREY-------FYTMSAHNPYYDQMEKNPICLNIPW 262
L + + + F+ +LIWRE+ F + H P+ + + +I W
Sbjct: 256 LLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQPFIEWTQ------HIQW 309
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--------------------------- 295
P+ E L AWKNGQTGYP +DA MRQL
Sbjct: 310 NPD-----ETALTAWKNGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLVDWRK 364
Query: 296 -------RLLDCTYCV----------------------CPVNFGRRLDPDGIYIKRYVPE 326
+L+D T P G++ DP G +I+ ++PE
Sbjct: 365 GEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPE 424
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
LR P +I+EP Q +S +YP IV+H QA L + + EK I
Sbjct: 425 LRDVPETFIHEPHTWAESHQ------VSLNYPTPIVDHKQARLMTLEAFEAEKRKSI 475
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 73/269 (27%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE AL +L+ + + +E+ Y ++ P+ G + S L+ G +++R Y A+
Sbjct: 197 GEEAALEQLHLFIEEGLEA-----YDVSRDYPEYDGT-SRLSVYLRTGEINIRTVYAAI- 249
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + F +L+WRE+++ + ++P+ Q I W N +
Sbjct: 250 ---SKAKASKGKAVF--IKELVWREFYHMIYVNHPHQKQEPLQAQFAAIEW-----ENDQ 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------ 304
WK G TGYP +DA MRQL R++ ++ V
Sbjct: 300 ALFEQWKAGTTGYPMVDAAMRQLSQTGWMHNRLRMIVASFLVKDLLIDWRWGEEYFQEAL 359
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
P +R DP G +IK YVP+L P++++
Sbjct: 360 MDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQAKRFDPKGHFIKTYVPQLEALPLKWL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNH 364
YEPWK PL +Q+ +DYP IV+H
Sbjct: 420 YEPWKLPLDLQDDLGFKPERDYPLPIVSH 448
>gi|410634949|ref|ZP_11345574.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
gi|410145523|dbj|GAC12779.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
Length = 476
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 125/314 (39%), Gaps = 73/314 (23%)
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPL-IRWLGGETEALIKLNERLS 165
R VT + S E +L + + + + P++ + + + W GE A I L+E L+
Sbjct: 161 RSVTSAPIQASYVYESALDEGI---DSLNLMPDIPWYEQMQAHWQPGEEGAGIALSEFLN 217
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
Q I +K + P L G + S L FG +S + ++A FN
Sbjct: 218 QSINDYKQA-----RDVPSLNGT-SHLSPHLHFGEISPHQIWYATLHKFNGSMANADMDC 271
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
F ++ WRE+ Y + H P NP W + L AW+ GQTG P
Sbjct: 272 F--LSEIGWREFSYYLLYHFPTLPSENFNPKFNQYHWR-----GRNNDLEAWQRGQTGVP 324
Query: 286 FIDAVMRQLR---------RLLDCTYCV----------------C--------------- 305
+DA MR+L R++ +Y V C
Sbjct: 325 IVDAGMRELWQTGYMHNRVRMIVGSYLVKNLKTHWHHGESWFWDCLLDADLAANSASWQW 384
Query: 306 ----------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
PV G + D +G Y++RY PEL+ P +YI++PW AP V +A
Sbjct: 385 VAGSGADASPFFRIFNPVTQGEKFDSEGEYVRRYCPELQNLPNKYIHKPWDAPEDVLIEA 444
Query: 350 NCIISKDYPERIVN 363
N + +DYP +V+
Sbjct: 445 NIRLGQDYPHPLVD 458
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 95/227 (41%), Gaps = 67/227 (29%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L FG +S + +WAL H E R HF +L WRE+ Y++ +NP +
Sbjct: 240 SPHLHFGEISPNQIWWALGSH----EETRDIDHFR--SELGWREFSYSLLFNNPSLPKSN 293
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
N N PWL + ++ L+AW+ GQTG P +DA MR+L R++ ++
Sbjct: 294 LNEKFDNFPWLSD-----DQRLSAWQKGQTGIPIVDAGMRELWQTGYMHNRLRMIVGSFL 348
Query: 304 VCPVNFGRRL-----------------------------------------------DPD 316
V + RL D
Sbjct: 349 VKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAH 408
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
G Y +R++PEL+ P +Y++ PW+AP + + A + ++YP IVN
Sbjct: 409 GEYTRRFLPELKDLPDKYLFRPWEAPKDILQGAGVTLGENYPLPIVN 455
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 72/252 (28%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQ 231
Y ++ P + G + S L FG +S+R+ + A +G PPS T +
Sbjct: 223 AAYEKDRDLPSIKGT-SRLSPFLSFGQISIRKVWAAC--------QGMPPSTGKATFLKE 273
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291
L WR++++ + +P E N+ W + E+ N W+ GQTGYP IDA M
Sbjct: 274 LAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKD-----EEAFNKWQAGQTGYPIIDAAM 328
Query: 292 RQL----------------------------------RRLLDCTYC-------------- 303
RQL R+L+D
Sbjct: 329 RQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGT 388
Query: 304 --------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISK 355
P+ G++ D +G YIK++VPEL Q P+++I+EP+ Q ++
Sbjct: 389 DAVPYFRIFNPITQGKKFDKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGT 448
Query: 356 DYPERIVNHVQA 367
DYP IV+H +A
Sbjct: 449 DYPLPIVDHNEA 460
>gi|383480261|ref|YP_005389155.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|383494243|ref|YP_005411919.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
gi|378928251|gb|AFC66457.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|378929970|gb|AFC68387.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
Length = 469
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKNLQESVSCIIGTDYPQPIVDHAK 450
>gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
Length = 477
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 208 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 261
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 262 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 307
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 308 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 367
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 368 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 427
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 428 HEPWKMPKNLQESVSCIIGTDYPQPIVDHAK 458
>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
Length = 477
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 208 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 261
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 262 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 307
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 308 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 367
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 368 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 427
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 428 HEPWKMPKNLQESVSCIIGTDYPQPIVDHAK 458
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 172/453 (37%), Gaps = 104/453 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF-- 59
FP T G R +FLLE +ADL + L+ L + QG P ++ +L + L + F
Sbjct: 47 FPKT---GPFRAQFLLESVADLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNR 103
Query: 60 EQDCEGVKPYQSFPT-----GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTM 114
E E ++ + G R+ TL + L P P ++ F
Sbjct: 104 EVTAEEIEVENRLRSALADLGIECLRFW-SSTLFHPEQL----PFPIRELPEVFTQFRKQ 158
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEAL 157
E + + F P P+ P++ G+ +I++ GGET AL
Sbjct: 159 VEKSAKPKAPF---PTPQSLSTLPDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAAL 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L + + ++ + + + P+ + T S L GC+S R +H T
Sbjct: 216 ARLQDYIWEQDRLKRYKETRNGMLQPNDS---TKFSPWLALGCVSPR----YIHQQVKTY 268
Query: 218 HEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
+ R S + + +LIWR+YF + A + L +PW N+E +
Sbjct: 269 EQDRVKNNSTYWLIFELIWRDYFRFICAKHGKRVFRVSGLQGLALPW----QDNRETF-E 323
Query: 276 AWKNGQTGYPFIDAVMRQLRR----------------------------------LLDCT 301
W+ GQTG+P IDA MR+L L+D
Sbjct: 324 KWQTGQTGFPLIDANMRELAATGFMSNRGRQNVASFLTKNLGLNWQMGAEWFESCLIDYD 383
Query: 302 YCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
C N+ + DP G Y++ ++PEL+ P + PW+
Sbjct: 384 VCSNWGNWNYAAGVGNDARGFRFFNIVKQAKDYDPQGDYVRHWLPELKDVPGGQVQTPWQ 443
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
QE I KDYPE +V+ Q++ N+Q
Sbjct: 444 LTALEQEMFGLTIGKDYPEPMVDLWQSAKVNEQ 476
>gi|15675407|ref|NP_269581.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SF370]
gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|410680903|ref|YP_006933305.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M1 GAS]
gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|395454290|dbj|BAM30629.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 476]
gi|409693492|gb|AFV38352.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
Length = 469
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKNLQESVSCIIGTDYPQPIVDHAK 450
>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS8232]
gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
Length = 469
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKNLQESVSCIIGTDYPQPIVDHAK 450
>gi|389695632|ref|ZP_10183274.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
gi|388584438|gb|EIM24733.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
Length = 492
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 117/303 (38%), Gaps = 79/303 (26%)
Query: 124 LFQTVPKPEQFHKYPEMDFGDPL-IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
L T+P E + D+ L W GE A LS+ + Y N+
Sbjct: 184 LASTIPLEELGLEPSSPDWAGGLRTAWRPGEEAARKSFRHFLSKGLRG-----YAENRDR 238
Query: 183 PDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT----GQLIWREY 237
P L G TS+ S L+FG +S R+ + H T PS +++WR++
Sbjct: 239 PSLIG--TSRLSPHLRFGEISPRQIW-----HAVTAQVAEHPSLARDAEKYLSEIVWRDF 291
Query: 238 FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-- 295
+ + +P+ + PW+ + K L AW+ G+TGYP +DA MRQL
Sbjct: 292 SHQLLHFHPHLPVRSHSSRFDAFPWI-----DDPKTLKAWRRGRTGYPIVDAGMRQLWQT 346
Query: 296 -------RLLDCTYCV-------------------------------------------- 304
R++ ++ V
Sbjct: 347 GWMHNRVRMITASFLVKHLLTDWRKGEAWFWDTLVDADPANNAFSWQWVAGSGPDSAPFH 406
Query: 305 ---CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
PV G + DPDG Y++ +VPEL P +++ PW AP V ++A + + YPE I
Sbjct: 407 RIFNPVTQGEKFDPDGDYVRTFVPELAGLPSTFLHHPWDAPPAVLQEAGISLGETYPEPI 466
Query: 362 VNH 364
V H
Sbjct: 467 VVH 469
>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
gi|72117822|gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
Length = 525
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 66/270 (24%)
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ L +E S + G Y + P L GP + S L+FG +S+R A H + G
Sbjct: 248 GQALFEEFTS-RMGDYGRRRDYPALRGP-SYLSVHLRFGTVSIRTLARAAH---GAVLRG 302
Query: 221 RPPSHFNIT--GQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAW 277
S T +L+WR++++ + H+P E +P I W ++Y +W
Sbjct: 303 GADSAGAATWLSELVWRDFYFMILHHHPRVAAGEAFHPAYDIIRW--RDGETGDRYFESW 360
Query: 278 KNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------ 304
++ TGYP +DA M Q+R R++ ++ V
Sbjct: 361 RDAATGYPLVDAAMLQIRQSGYMHNRLRMVTASFLVKDLGVDWRRGEHYFADQLNDFDFA 420
Query: 305 -------------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C PV + DP G +I++Y+P+L P +Y++ PW A
Sbjct: 421 ANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAALPDKYVHAPWTA 480
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLEN 371
P V A + ++YP +V H A E
Sbjct: 481 PQDVLLAAGVRLGENYPRPLVQHDVARKET 510
>gi|402771126|ref|YP_006590663.1| DNA photolyase [Methylocystis sp. SC2]
gi|401773146|emb|CCJ06012.1| DNA photolyase, FAD-binding [Methylocystis sp. SC2]
Length = 480
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 105/272 (38%), Gaps = 74/272 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
WL GET A +L + + +K +V P L FG LS R +
Sbjct: 204 WLVGETAARAELADFARHHVGDYKVERDFMGRVGVSRLSP------HLHFGELSPREVW- 256
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+ I E + +L WRE+ + + N +D E+ P+ P +
Sbjct: 257 ------HAISEPQSIGGEAYLRELGWREFCHHLLISN--WDLPER-PLDRTFERFP--YR 305
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV--------------- 304
+ E L+AW+NGQTGYP +DA MR+L RL+ ++ +
Sbjct: 306 DDETSLDAWRNGQTGYPLVDAAMRELWITGWMHNRARLVSASFLIKHLLIDWRKGERWFW 365
Query: 305 --------------------C------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C P G + DPDG Y++RYVPEL +
Sbjct: 366 DTLVDADLANNSANWQWVAGCGADAAPYFRIFNPALQGEKFDPDGAYVRRYVPELASLDV 425
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+YI+ PW AP V A + YP IV+H
Sbjct: 426 RYIHRPWAAPEDVLRAAGVKLGVTYPHPIVDH 457
>gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
Length = 486
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 111/478 (23%), Positives = 183/478 (38%), Gaps = 127/478 (26%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
+H F F+ + L L ++L+ + Q+ I+QG + +FQKL + ++ ++ Q+ G
Sbjct: 42 IHYSQRHFDFIKQSLEALQKELQKYHTQILIIQGEAVPVFQKLTQVISIREIYSHQET-G 100
Query: 66 VKPYQSFPTGSHPPRYQPCKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTMSESLQR---- 120
+K L RDL+ G + K I ++T G + R
Sbjct: 101 IK-------------------LTYERDLAVGKLLKEKGIIWNEYITNGVIRGIKNRKNWK 141
Query: 121 -------EVSLFQTVPKPEQFHKYPEMD-----FGDPLIRWL-------GGETEALIKLN 161
+ P P F KY E++ F P I+ + GG AL +N
Sbjct: 142 EDWYDYMDKDCLPFNPTPRSFVKYIEIEELENAFDVPSIKTVHNPNFQKGGVPTALRYMN 201
Query: 162 ERLSQEIESFKSGVYLSNQVS-PDLTGPPTSQ-SAALKFGCLSVRRFY---WALHDHFNT 216
+ ++++ SN +S P+L S+ S + +G +S+R+ Y W +H
Sbjct: 202 SFFEERVQNY------SNHISKPELGRKGCSRLSPYIAWGNISIRQVYTKAWEMH----- 250
Query: 217 IHEGRPPSHF-NITGQLIWREYF---YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+G+ N +L W+ +F + M + + I +N + EK
Sbjct: 251 -QQGKFKRQISNFASRLRWQAHFIQKFEMESTMEF--------IAVNKGYRNLIQRVNEK 301
Query: 273 YLNAWKNGQTGYPFIDAVMR----------QLRRLLDCTYC------------------- 303
Y AW G+TG P +DA MR ++R L+ Y
Sbjct: 302 YHKAWITGKTGVPLVDACMRCLNTTGYLNFRMRALVVSFYTHHLFQPWQNCSPHLAQQFL 361
Query: 304 ----------------VCPVNFGRRLDP---------DGIYIKRYVPELRQFPIQYIYEP 338
V +N R +P DG +IK++VPEL P ++I+EP
Sbjct: 362 DFEPGIHYPQIQMQAGVTGINTLRVYNPVKNSYEHDADGTFIKKWVPELATIPAEFIHEP 421
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHV 396
WK Q N I KDYP IVN +A + + + N + KD + H
Sbjct: 422 WKLTPIEQILYNFEIGKDYPLPIVNLEEARKFSSDFFWSMRKNESVKKDSKRILETHT 479
>gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
Length = 466
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 97/252 (38%), Gaps = 73/252 (28%)
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y + PDL TS+ SA LK+G + R L H EG +L W
Sbjct: 218 YGQQRDRPDLD--TTSRLSAPLKYGEIHPRTILADLAAHPAADGEG----ARRFVTELAW 271
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
RE++ + H P + +P+ + P + AW+ G+TG+PF+DA MRQL
Sbjct: 272 REFYADVLWHQPRSAWRDLRDALSGMPY--DRGPEVNDLVEAWRRGRTGFPFVDAGMRQL 329
Query: 295 R---------RLLDCTYCV----------------------------------------- 304
R++ ++ V
Sbjct: 330 VAQGWMHNRVRMVTASFLVKDLHVWWPVGARHFLDHLLDGDLASNNHGWQWVAGTGTDAS 389
Query: 305 ------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV G+R DPDG YI+R+VPELR P +EPW P G YP
Sbjct: 390 PFFRVFNPVTQGQRFDPDGDYIRRWVPELRHLPGAAAHEPWLWPDGHDHG--------YP 441
Query: 359 ERIVNHVQASLE 370
ERIV+H + LE
Sbjct: 442 ERIVDHAEERLE 453
>gi|448622754|ref|ZP_21669403.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753262|gb|EMA04679.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 484
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 158/449 (35%), Gaps = 109/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN---------FTKL 57
H G R R+LL+ LA+L + G L + +G P ++ + L+ ++ L
Sbjct: 40 HAGAPRVRYLLDALAELREAYRDRGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGL 99
Query: 58 CFEQDCE--------GVKPYQSFPTGSHPPRYQPCKTLLNF------------RDLSGLP 97
E+D + GV HPP + RD
Sbjct: 100 ARERDADVRLALDDAGVARESVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPEPY 159
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P P D T T +ESL + F ++ F +P TEA
Sbjct: 160 PEPTADDLADAGTLETAAESLSDGDAEFDVAVG--DLPTISDLGFEEPTAAVQSAGTEAA 217
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F + Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 218 ---RERLS----AFCADAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 268
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W ++ +
Sbjct: 269 REGVGGERDESVEEFQSQLAWREFYAHVLREHPSVVTENYKEYEEDIAWRDDA-----EE 323
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 324 LAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 383
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YIKRYVPEL I+E
Sbjct: 384 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE 443
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 444 -WHDLTDLERER---LAPDYPEPIVDHSE 468
>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
Length = 501
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 156/434 (35%), Gaps = 105/434 (24%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L L LD ++ GG+L + +G P++ Q++ R + + +
Sbjct: 65 WLHHSLEALDAAVRERGGRLILRRGDPLAELQEIVRATGAKGVYWNR------------- 111
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT------- 127
RY+P + R + L + F L ++ FQ
Sbjct: 112 -----RYEPAARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRH 166
Query: 128 ----------------VPKPEQFHKYPEMDFGD--PLIRWLGGETEALIKLNERLSQEIE 169
+P PE++ + ++ + P + W G +A ++ +
Sbjct: 167 CLTLPVAAPRKLPAGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMT 226
Query: 170 SFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN 227
F +G D G + SAAL +G +S R+ + A+ P +
Sbjct: 227 RFVAGAIDRYDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGVFPPSNGAR 286
Query: 228 I-TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
I +L WRE+ Y + H P+ + W + + + L AW+ GQTGYP
Sbjct: 287 IFLAELGWREFAYHLLWHFPHTIEQPLRRAFARFSWAEDP---EGRRLRAWQRGQTGYPI 343
Query: 287 IDAVMRQLR---------RLLDCTYCV--------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 344 VDAGMRQLWQTGWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWS 403
Query: 305 --------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
PV GR+ D DG+Y++R+VPEL + P ++++ PW A A
Sbjct: 404 AGCGADAAPYFRIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAG 463
Query: 351 CIISKDYPERIVNH 364
+ ++YP +V+H
Sbjct: 464 VRLGENYPRPVVDH 477
>gi|374292340|ref|YP_005039375.1| deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
gi|357424279|emb|CBS87146.1| Deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
Length = 494
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 109/276 (39%), Gaps = 68/276 (24%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
RW+ GET AL L + L + G Y + + PD G ++ S L FG + R+
Sbjct: 212 RWVPGETAALSHLADFLDGPV-----GAYATERDRPDRDGT-SALSPYLAFGEIGPRQV- 264
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
W H P + ++ WRE+ Y + H P +P + PW ++
Sbjct: 265 WHAARHAADARPELAPGIDSFLREVGWREFQYHLLHHAPELPDRPLDPRFADFPWREDA- 323
Query: 268 PNKEKYLNAWKNGQTGYPFID---------AVMRQLRRLLDCTYCV-------------- 304
L AW+ G+TGYP +D M R++ ++ V
Sbjct: 324 ----AGLLAWQRGRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVKDLLLPWQEGERWF 379
Query: 305 ---------------------C------------PVNFGRRLDPDGIYIKRYVPELRQFP 331
C PV G + DP+G Y++RYVPEL + P
Sbjct: 380 WDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFDPEGDYVRRYVPELDRLP 439
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++I++PW AP + +A + DYP I++H A
Sbjct: 440 PRWIHQPWAAPTELLRQAGVRLGDDYPRPIIDHGVA 475
>gi|443320872|ref|ZP_21049947.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
gi|442789415|gb|ELR99073.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
Length = 485
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/440 (22%), Positives = 173/440 (39%), Gaps = 84/440 (19%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G + G R +FL E + DL L+ G L + QG P I L R + + F Q+
Sbjct: 47 GLVKTGSFRAQFLRESVIDLRHNLQQLGSNLILRQGLPEVIIPALARSIAVDAVYFHQEV 106
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRD-----LSGLPPRPKEDIDFRHVTFGTMSESL 118
+ + T Q T+ +F L LP P + + F + +
Sbjct: 107 TAEE--LAVETALKKALAQSQITVQSFWGATLYHLDNLPFAPAQLPEL----FTNFRKEV 160
Query: 119 QREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALI--KLNERLSQ-EIESF--- 171
+R+ + ++P+PE+ P++D G+ P + + ++ ++ K ER + ++S+
Sbjct: 161 ERKAEIEPSLPQPERLPPLPDIDPGEIPELAEIAPDSRGVLNFKGGERAGKARLKSYFWE 220
Query: 172 KSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT 229
K + + + GP S S L GCLS R Y + + + S + +
Sbjct: 221 KDALRNYKETRNGMLGPDYSSKFSPWLANGCLSPRYIYAQVQSY--ETQRVKNDSTYWLV 278
Query: 230 GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
+L+WR++F +S+ + + IPW + P++ K W+ G+TGYP +DA
Sbjct: 279 FELLWRDFFRFISSKHKNRIFQPSGLQGIEIPW--QEDPSRFKL---WQEGKTGYPLVDA 333
Query: 290 VMRQLR--------------------------------RLLDCTYCVCPVNFG------- 310
MR+L L Y VC N+G
Sbjct: 334 NMRELAGTGFMSNRGRQNVASFLTKNLGINWILGAEWFESLLIDYDVCS-NWGNWNYSAG 392
Query: 311 -----------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
R DP G Y+K ++PEL+ P I+EPW+ Q+ +
Sbjct: 393 VGNDARGFRYFNIPKQSRDYDPQGKYLKHWLPELKSLPGDKIHEPWRLSSQEQQNFGVRL 452
Query: 354 SKDYPERIVNHVQASLENKQ 373
DY +V+ ++ N++
Sbjct: 453 GVDYHRPVVDFFKSIQANER 472
>gi|386845211|ref|YP_006263224.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
gi|359832715|gb|AEV81156.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
Length = 436
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 161/426 (37%), Gaps = 106/426 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+ NR RFL + LADL L+ G L I +G P++ + E++ + + D G
Sbjct: 39 LSANRSRFLHQSLADLRNSLRERGADLVIREGDPVAETIAVASEVDASTITVAADVTG-- 96
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPP---RPKEDID-FRHVT--FGTMSESLQRE 121
Y KT+ + ++ LPP RP + +R T F ++ R
Sbjct: 97 -YAQRRERRLRDERFRVKTVPS---VTVLPPGTVRPGGGGESYRVFTPYFKAWEKAGWRA 152
Query: 122 VSLFQ---TVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLS 178
S +P + PEM GD GGETE +L ++++ +
Sbjct: 153 PSATPGKVAMPAGIAPGRLPEMPAGDSPDAVAGGETEGRRRL--------QAWQKEMARY 204
Query: 179 NQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREY 237
+ D+ TS+ SA L+FGCLS L + P + + QL WR++
Sbjct: 205 AEDHDDMAADNTSRLSAYLRFGCLS------PLELALAAKADDSPGAQAYLR-QLCWRDF 257
Query: 238 FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY----LNAWKNGQTGYPFIDAVMRQ 293
+Y ++A P ++ P L E +Y L W++G TG P +DA MRQ
Sbjct: 258 YYQVTATFP---EISTRP-------LREKADQNWRYDDDALRHWQDGLTGVPIVDAGMRQ 307
Query: 294 LR---------RLLDCTYCV---------------------------------------- 304
LR RL+ +
Sbjct: 308 LRAEGWMHNRARLITAAFLTKHLGIDWRPGLQWFFRWLLDGDVPNNSGNWQWTAGTGNDT 367
Query: 305 ------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
P+ +R D G+Y++RYVPEL+ +++PW+ P V+ DYP
Sbjct: 368 RPYRRFNPIRQAQRFDAQGVYVRRYVPELKDIDGVTVHQPWRLPESVRR------GLDYP 421
Query: 359 ERIVNH 364
+ +H
Sbjct: 422 GPLESH 427
>gi|386715963|ref|YP_006182287.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
gi|384075520|emb|CCG47015.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
Length = 480
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 111/284 (39%), Gaps = 69/284 (24%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE AL + L + I Y + P + G + S L+ G +S+R Y +H
Sbjct: 204 GENNALDHFYDFLDEAIYE-----YEKERDFPAVDGT-SRMSRFLRTGAISIRTVYHLIH 257
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + +L WR+ FY M H +Y + LP ++ E
Sbjct: 258 DQVDYRKNTEGVETY--ISELAWRD-FYNMIYH--FYPNAGDEEMVEKYRGLPWNYD--E 310
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL----------------------------------RRL 297
N WK G+TG+P IDA MRQ+ +L
Sbjct: 311 DLFNQWKEGRTGFPIIDAAMRQMNETGWMHNRLRMAVASFLTKDLLMDWRAGERYFAEQL 370
Query: 298 LD-------------CTYCVCPVNFGR---------RLDPDGIYIKRYVPELRQFPIQYI 335
+D + PV + R R DP G +IK +VPEL +YI
Sbjct: 371 IDYDPASNIGGWQWAASTGTDPVPYFRVFNPTRQSERFDPHGRFIKEWVPELIDVDKKYI 430
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
+EP K QE+ANC+I +DYPE +V+H + + K EK
Sbjct: 431 HEPAKMSEKDQEQANCVIGEDYPEPMVDHKTMRVRAIEMFKNEK 474
>gi|18874061|dbj|BAB85485.1| cryptochrome [Neobellieria bullata]
Length = 81
Score = 81.3 bits (199), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 299 DCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
D + CP+ +RLDP G YIK+YVPEL P +YI+EPW+ P+ +QE ++C+I YP
Sbjct: 1 DSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYP 60
Query: 359 ERIVN 363
ER+++
Sbjct: 61 ERLID 65
>gi|417856580|ref|ZP_12501639.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933535|gb|EIK41648.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 469
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQHFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAK 450
>gi|384218167|ref|YP_005609333.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
gi|354957066|dbj|BAL09745.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
Length = 447
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 159/435 (36%), Gaps = 94/435 (21%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R+ +L + L L + + GG L + +G + ++ RE + + + P
Sbjct: 17 GATRW-WLAQSLRALGAETATRGGSLILRKGPAAKVIPEVARESGAAMVYWNGVAQA--P 73
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLF--- 125
+QS + +F +PP + + R + + +R VSL
Sbjct: 74 HQSVEKQLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLR--VFTPFWRRVVSLGDPP 131
Query: 126 QTVPKPEQFHKYPEMDFGDPL---------------IR--WLGGETEALIKLNERLSQEI 168
+ +P P + P + GD L +R W GE A ++L + L
Sbjct: 132 KPLPAPRELRPAPPL-AGDALESWTLEPTKPDWAGGLRQTWTPGEASARMRLRDFLRHTA 190
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
VY+ ++ PD G +S S L+FG LS R+ W + P
Sbjct: 191 R-----VYVGDRDRPDREGT-SSLSPHLRFGELSPRQV-WHAARFAAAENPAIGPGVEKF 243
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+L WRE+ + +P PW +K L AW+ G+TGYP +D
Sbjct: 244 LSELGWREFCRHLLHDHPSLATENLQTNFDGFPW-----KGDKKALAAWQRGRTGYPIVD 298
Query: 289 AVMRQL----------------------------------RRLLDCTYCVCPVNF----- 309
A +R+L L+D P N+
Sbjct: 299 AGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGESWFWDTLVDADAGSNPANWQWVAG 358
Query: 310 -----------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
G + DPDG Y++R+VPEL+ P + I++PW+A A
Sbjct: 359 CGADAAPYFRVFNPTLQGEKFDPDGAYVRRWVPELKDVPAKLIHQPWQASPIELASAGVT 418
Query: 353 ISKDYPERIVNHVQA 367
+ K YP+ IV+H +
Sbjct: 419 LGKTYPQPIVDHAKG 433
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 64/207 (30%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+L+WR++ Y + H P N PW + L W+ GQTGYP IDA
Sbjct: 291 ELVWRDFSYHLLFHFPDLATKNWNTKFDAFPWR-----HAPDLLEKWRKGQTGYPIIDAG 345
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MRQL R++ ++ +
Sbjct: 346 MRQLWQTGFMHNRVRMIVASFLIKDLLIDWREGERWFRDTLVDADPASNAASWQWVAGSG 405
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
P++ G + DP+G Y++R+VPEL+ P ++I++P+ AP V ++A +
Sbjct: 406 ADAAPFFRIFNPISQGEKFDPEGAYVRRFVPELKAMPDKFIHKPFDAPFAVLKEAGVSLG 465
Query: 355 KDYPERIVNHVQ---ASLENKQYLKKE 378
K YP+ IV+H + A++ Q LK E
Sbjct: 466 KTYPQPIVDHGKARDAAMAAFQGLKTE 492
>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
Manfredo]
gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
str. Manfredo]
Length = 469
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAK 450
>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
Length = 477
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 208 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 261
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 262 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 307
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 308 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 367
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 368 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 427
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 428 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAK 458
>gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica]
Length = 539
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/459 (22%), Positives = 172/459 (37%), Gaps = 132/459 (28%)
Query: 14 RFLLECLADLDRQLKSH-GGQLFIVQGSPISIFQKLKRELNFTKLCFEQD---------- 62
+F+ E L DL RQLK G+L + G + +K+K +NF+ + + +D
Sbjct: 108 QFMCESLNDLGRQLKEEVDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVYARERDG 167
Query: 63 ----------CEGVKP--YQSFPTGS--HPPRYQP----------CKTLLNFRDLSGLPP 98
E +K Y P H P+ P K + F D+
Sbjct: 168 EIEEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPPKPYRVLSIFFKHIQKFYDIR---- 223
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
+P+ + +F F S + +S T+ + K E GG LI
Sbjct: 224 KPESNFEFEASQFTQSKFSFKFSISKLNTLYNANE--KLAER----------GGRLVGLI 271
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
L E++ + + ++ ++ L T SA LKFG +S+R YW + F H
Sbjct: 272 GL-EKIKNKKDYNETRNFMH------LKAGTTKMSAHLKFGTVSIREMYWRTAELFGETH 324
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN--IPWLPESHPNKEKYLNA 276
++ QL++R+++ + +HNP + ++ IPW + EK A
Sbjct: 325 --------DLIRQLVFRDFYLKIYSHNPELQRGTALQAGVDERIPW-----SDDEKLWTA 371
Query: 277 WKNGQTGYPFIDAVMRQLR-------RLLDCTYCVCPVNF-------------------- 309
W G TG+P +DA RQL+ R+ T CV F
Sbjct: 372 WCEGMTGFPLVDAAQRQLKEIGWQHNRMRMLTGCVLTKYFMIDWRKGMKFFYQNLVDADV 431
Query: 310 ------------------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
++ D +G YIK+Y+PEL +++
Sbjct: 432 FNNTAGWGWVSSTGPDAVPYFRPPFNPWIQSKKFDLEGKYIKQYIPELADVSPADLHKWG 491
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKE 378
A + + K N + + YP +V H +AS +N YL K+
Sbjct: 492 DASIRAKYKKNKKV-QAYPAPVVKHDEAS-KNAVYLYKK 528
>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
Length = 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 211 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 264
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 265 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 310
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 311 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQHFQQQL 370
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 371 IDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFDPKGEFIKAYLPQLEHVPEKYL 430
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 431 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAK 461
>gi|386363038|ref|YP_006072369.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|421892494|ref|ZP_16323147.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
gi|350277447|gb|AEQ24815.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|379981746|emb|CCG26869.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
Length = 469
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAK 450
>gi|381186837|ref|ZP_09894405.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651143|gb|EIA09710.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 453
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/415 (22%), Positives = 155/415 (37%), Gaps = 81/415 (19%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSF 72
+RF+ E + DL +L + ++F +L ++ + Q+ +
Sbjct: 11 WRFIYESIQDLQTKLNPINATFYYFHNEVQNVFSELSKKYEIKTVFSHQEIGNKITFDRD 70
Query: 73 PTGSHPPRYQPCKTLLNFRDLSG----LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTV 128
T + +Q + + G L R D + +V +E V+ V
Sbjct: 71 ITMQNF--FQKNNIIWKESQMHGVIRKLKSRQHWDKRWENVM---RAEPKMVAVNDLNLV 125
Query: 129 PKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLS-QEIESFKSGVYLSNQVSPDLTG 187
+ F+ Y G+PL + + K E L+ + ++SF Y++ S ++
Sbjct: 126 HLEDGFYSYLR---GNPLTEEIVNPNKNFQKGGENLAWRYLDSFVKERYVN--YSKHISK 180
Query: 188 PPTSQ------SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTM 241
P S+ S L +G +S+R Y + H+ R + N +L W +F
Sbjct: 181 PALSRKGCSRMSPYLTYGAISMRMIYQYTNQHYENSKNKR--AILNFVSRLHWHCHFI-- 236
Query: 242 SAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------- 294
+ D+ +N + P E+Y+ AW+ G+TG P +DA MR L
Sbjct: 237 ---QKFEDECRMEFENVNRAYDTLVKPKNERYIKAWQEGKTGVPIVDACMRCLVTTGYIN 293
Query: 295 --------------------------RRLLD--------------------CTYCVCPVN 308
R+ LD P+
Sbjct: 294 FRMRAMVVSFFTFNLWQDWRELHFLARQFLDYEPGIHYPQIQMQSGTTGINTIRIYSPIK 353
Query: 309 FGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
DPDG++IK+++PEL P+ I+EPWK L Q+ NC I KDYPE IVN
Sbjct: 354 NSEDHDPDGVFIKQWLPELADIPVSLIHEPWKLNLIEQQFYNCEIGKDYPEPIVN 408
>gi|21910695|ref|NP_664963.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315]
gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS315]
gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
SSI-1]
Length = 469
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 359
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DYP+ IV+H +
Sbjct: 420 HEPWKMPKYLQESVSCIIGTDYPQPIVDHAK 450
>gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2255]
gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
HTCC2255]
Length = 519
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 184/466 (39%), Gaps = 92/466 (19%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSF 72
+ F+ +CL DL+ +L G L + G + IF ++ + + ++ + Y+
Sbjct: 56 WHFIYDCLVDLNNELNDLGQPLIVQTGDVVDIFIQISEIFDIKNIYSHEETGNMWTYE-- 113
Query: 73 PTGSHPPRYQPC--KTLLNFRDL--SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTV 128
R Q K + ++ +G+ + D+ + MSE + + +
Sbjct: 114 ----RDKRVQVWCKKNAIGQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPDYINPI 169
Query: 129 PKPEQFHKYPEMD---FGDPLIRWL--GGETEALIKLNERLSQEIESFKSGVYLSNQVSP 183
K + P D FG P+I + GG +A+ L L++ +S YL + +P
Sbjct: 170 KK-NVYSTIPNKDDELFGTPIIGRVQRGGRIKAICDLKSFLNE-----RSSNYLYHISAP 223
Query: 184 DLTGPPTSQ-SAALKFGCLSVRRFYWALH-------DHFNTIHEGRPPSHFNITGQLIWR 235
+ S+ SA L +G LSVR ++ D I+ GR S FN +L WR
Sbjct: 224 GKSEKYCSRLSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIY-GRNLSAFN--SRLAWR 280
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL- 294
+F P +E + + L + P+ K+L AW G TGYPF+DA MR L
Sbjct: 281 CHFIQKIESQP---NIETHCMHSAFESLRKIDPDDNKFL-AWSKGNTGYPFVDACMRNLI 336
Query: 295 --------RRLLDCTYC------------------------------------VCPVNFG 310
R + ++ V +N
Sbjct: 337 SEGWITFRMRAMLVSFASYQLWIDWRLSGNYLAKLFTDFEPGIHFSQLQMQSGVTGINAM 396
Query: 311 RRLDP---------DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
R +P +G +IK++VPEL P ++I+EPWK + + + I +DYP I
Sbjct: 397 RVYNPIKQSIEHDINGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPI 456
Query: 362 VNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK 407
V+H + KQ + + N + Y R+V S +++ K
Sbjct: 457 VDHEHEARIAKQKISNVRKNELFK--YESRLVFEKHGSRKSRSKRK 500
>gi|407973400|ref|ZP_11154312.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
gi|407431241|gb|EKF43913.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
Length = 489
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 114/289 (39%), Gaps = 74/289 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GET A +L L + +++ L ++++ + T +S S L G ++ + W
Sbjct: 216 WTPGETGAHKRLEAFLDGGGKGYET---LRDRMASEAT---SSLSPHLSHGEITPYQI-W 268
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+H N + P +L WRE+ + + HNP N PW
Sbjct: 269 QHLEHRNDL---TPGDLQTFRKELGWREFCWHLLFHNPQLAAKNFNSDFDAFPW-----N 320
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
+ L AW+ G+TGYP +DA MRQL +
Sbjct: 321 RDDGALQAWQRGRTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVKDLRLDWREGEQWFW 380
Query: 297 --LLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFPI 332
L+D P N+ G + D G YI+RYVPEL P
Sbjct: 381 DTLVDADPASNPANWQWVAGSGADAAPYFRIFNPVLQGEKFDSGGDYIRRYVPELENLPS 440
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKE 378
+ I++PWKA +KA + K YPE +V+H A +L + + LK E
Sbjct: 441 KGIHKPWKAKGEALKKAGITLGKTYPEPMVDHATAREHALSDYKSLKSE 489
>gi|403713599|ref|ZP_10939699.1| deoxyribodipyrimidine photo-lyase [Kineosphaera limosa NBRC 100340]
gi|403212363|dbj|GAB94382.1| deoxyribodipyrimidine photo-lyase [Kineosphaera limosa NBRC 100340]
Length = 458
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 96/248 (38%), Gaps = 72/248 (29%)
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y S + PDL TS+ S LKFG L R + H +G QLIW
Sbjct: 207 YDSARDRPDLDA--TSRLSEHLKFGALHPRTLLADIAAHPAADTKGA----HRFVDQLIW 260
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
RE++ + H P+ + PI ++ P+ + AW G+TGYP++DA MRQL
Sbjct: 261 REFYADVLWHRPHTAWSDFRPIG-DLGGDPDHEEQSAAHWQAWCEGRTGYPYVDAGMRQL 319
Query: 295 R---------RLLDCTYCV----------------------------------------- 304
R++ ++ V
Sbjct: 320 LARGWMHNRLRMVTASFLVKDLHLRWQHGARFFLQHLRDGDIASNNHGWQWAAGTGTDAA 379
Query: 305 ------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV GRR DPDG Y++R+VPELR P +EPW+ G + Y
Sbjct: 380 PYVRVFNPVTQGRRFDPDGDYVRRWVPELRHVPGADAHEPWRTADGYADG--------YA 431
Query: 359 ERIVNHVQ 366
RIV+H +
Sbjct: 432 GRIVDHAE 439
>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/448 (24%), Positives = 168/448 (37%), Gaps = 113/448 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G +R +FLLE + DL LK G L + +G P I L ++L
Sbjct: 53 FPKT---GPHRLKFLLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGNVSAVTLH 109
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT--------FGT 113
+ V P S+ +P + P + L ++ G +ED+ FRH++ F
Sbjct: 110 EEVTVVPLYSY----NPILWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRK 165
Query: 114 MSESLQREVSLFQT----VPKPEQFHK-----YPEMDFGDPLIR------WLGGETEALI 158
+E+ + S FQ P P + + + D DPL GGET+AL
Sbjct: 166 AAETQGKVRSTFQMPDRLKPLPSGLEEGSVPTHQDFDQQDPLTDPRSAFPCCGGETQALQ 225
Query: 159 KLNERLSQE--IESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
+L+ + + S+K G+ S + +P L GC+S R Y +
Sbjct: 226 RLHHYFWETNLVASYKDTRNGLIGIDYSTKFAP-----------WLALGCISPRYIYEQI 274
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ + S + + +L+WR+YF ++ + ++PW +
Sbjct: 275 RKYEKERTANQ--STYWVIFELLWRDYFRFVALKYGRRIFFLRGLQDKDVPWKKDP---- 328
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR-------------------------RL-------L 298
K +AWK G+TG PF+DA MR+L RL L
Sbjct: 329 -KLFDAWKEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTKDLXIDWRLGAEWFEYL 387
Query: 299 DCTYCVCPVNFGRRL------------------------DPDGIYIKRYVPELRQFPIQY 334
Y VC N+G L D G YI+ +VPEL+Q
Sbjct: 388 LVDYDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDAGGDYIRLWVPELQQIKGGD 446
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIV 362
+ PW +N + + YP IV
Sbjct: 447 AHTPWALSTASLAHSNVSLGETYPYPIV 474
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 178/452 (39%), Gaps = 102/452 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+S L I G P I +L +EL ++ + Q
Sbjct: 47 FPKT---GKFRAKFLLESVADLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQ 103
Query: 62 DCEG----VKPYQSFPTGSHPPRYQP--CKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTM 114
+ V+ + P + + TL + DL L P+ +FR
Sbjct: 104 EVTAEELAVEKAVNKALSRVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFR------- 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEAL 157
+ ++R + T P P++ K P+++ G+ + + GGE
Sbjct: 157 -KQVERHWQIKATYPTPKKLTKLPKIELGNLPSFNDLGVTEAILDRRGFLSFQGGEMAGK 215
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
++ E + + +S K+ N++ T + SA L GCLS R Y + + T
Sbjct: 216 SRIKEYI-WDSDSLKTYKETRNEMLG--TNYSSKFSAWLSCGCLSPRYIYEEVQKYEQT- 271
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S + + +L+WR++F + + + + LN+PWL + N W
Sbjct: 272 -RVKNDSTYWLIFELLWRDFFRFICSKHGNKIFYKSGLQELNLPWLEDWQR-----FNLW 325
Query: 278 KNGQTGYPFIDAVMRQLR-------------------------RL-------LDCTYCVC 305
G+TGYP +DA MR+L RL L Y VC
Sbjct: 326 CEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRLGAEWFESLLVDYDVC 385
Query: 306 PVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
N+G R DP G Y++ ++PEL I+EP+K
Sbjct: 386 S-NWGNWNYTAGVGNDARGFRYFNIPKQSRDYDPKGDYLRHWLPELALIKGDKIHEPYKL 444
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
Q + I+ +YP IV+ Q+ N++
Sbjct: 445 SPEEQNRYTVILGVNYPRPIVDFFQSIKHNEK 476
>gi|383450757|ref|YP_005357478.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium indicum
GPTSA100-9]
gi|380502379|emb|CCG53421.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium indicum
GPTSA100-9]
Length = 486
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/455 (22%), Positives = 172/455 (37%), Gaps = 77/455 (16%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H F F+ + L +L +L Q+ IV+G+ ++IF+KL ++ K F G+
Sbjct: 43 HYSKRHFDFIKQSLEELQLELSKLHTQILIVEGNALAIFKKL-HSIHSIKNVFSHQETGI 101
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESL------QR 120
H ++ + N +G+ K +++ + M +L R
Sbjct: 102 NTTYQRDIQLHN-WFKSENIVWNEYVWNGVFRGRKNRESWKNDWYQYMESNLFPAPTNSR 160
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQ 180
+ + + E + P + + GG L L+ L++ ++++ Y+S
Sbjct: 161 VFIKYSEIEQIENSFQIPNLKTNTLTLFQKGGVKTGLRYLHTFLNERVQNYSK--YIS-- 216
Query: 181 VSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF-NITGQLIWREYF 238
P+L S+ S + +G LSVR+ Y H + EG+ N +L W+ +F
Sbjct: 217 -KPELGRKSCSRLSPYITWGNLSVRQVY---HLAWQKRQEGKFKKQIDNFASRLRWQAHF 272
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR------ 292
P + N N+ + S + AWKNG TG+P +DA MR
Sbjct: 273 IQKFEMEPEMEFQAINKAFRNLNQMKNS-----AFQKAWKNGTTGFPLVDACMRCLKETG 327
Query: 293 ----QLRRLL-------------DCTYCVCP----------------------------- 306
++R L+ DC + +
Sbjct: 328 YLNFRMRALIVSFFTHDLFQPWQDCVHYLAQQFLDFEAGIHYPQIQMQAGVSGINTIRIY 387
Query: 307 --VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
V + D G +IK++VPEL+ PIQ+I+EPWK + I DYP+ IVN
Sbjct: 388 NVVKNSQEHDESGEFIKKWVPELKNIPIQFIHEPWKMTPIEETLYGFRIGIDYPKPIVNQ 447
Query: 365 VQASLENKQYLKKEKANCIINKDYPERIVNHVQAS 399
A + Y K + KD + H AS
Sbjct: 448 ENARKKASDYFWNIKKSEEAKKDNKRILKIHTDAS 482
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 110/473 (23%), Positives = 175/473 (36%), Gaps = 113/473 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL L+ G L + G P + + R+L T + F +
Sbjct: 50 FPKT---GAFRAQFLLESVADLRASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHE 106
Query: 62 DCEGVK----------------PYQSFPTGS-HPPRYQPCKTLLNFRDLSGLPPRPKEDI 104
+ + +QSF + + P P T + R +
Sbjct: 107 EATAEEIAVEERLIQALKDQGTAHQSFWGATLYAPDDLPFGTDEIPEVFTQFRKRVESQS 166
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL---- 160
D R + ++L + +P P ++ + GGET L +L
Sbjct: 167 DVRSPFASPKALPALGAIALGE-LPTLADLGLEPPSPDKRGVLAFRGGETAGLARLQHYF 225
Query: 161 --NERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
++RLS +E + G S++ SP L GCLS R +HD T
Sbjct: 226 WQSDRLSVYKETRNGMLGADYSSKFSP-----------WLALGCLSPRY----IHDQVLT 270
Query: 217 IHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ R S + + +L+WR+YF + + + IPW E P E
Sbjct: 271 YEDDRTANDSTYWLIFELLWRDYFRFICLKHGNQIFRAAGLQGVEIPW-KEDWPRFE--- 326
Query: 275 NAWKNGQTGYPFIDAVMRQLRRL--------------------------------LDCTY 302
W G+TG+P +DA MR+L L Y
Sbjct: 327 -LWTRGETGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESLLIDY 385
Query: 303 CVCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEP 338
VC N+G + DPDG Y+K ++PEL P ++EP
Sbjct: 386 DVCS-NWGNWNYTAGVGNDARGFRFFNILKQSKDYDPDGRYVKHWLPELADVPGAKVHEP 444
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPER 391
WK Q++ N + DYP +V+ +++ EN++ N +++ P R
Sbjct: 445 WKLQPVEQKRFNLRLGVDYPNPVVDLFKSAQENEKVY-----NAAVSRHAPPR 492
>gi|407771650|ref|ZP_11119003.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285351|gb|EKF10854.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 494
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 123/311 (39%), Gaps = 75/311 (24%)
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEI 168
+ G + S + +++ PKP + F D R+ GE A+ +L++ + +
Sbjct: 183 IPLGDLQLSDEADIAGLDLSPKPFDW----ATGFAD---RFTPGEQGAMDQLHDFIDGRL 235
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
+ L ++ +T + S L+FG +S R+ W +H+ H G+ +
Sbjct: 236 SDYAD---LRDRPDHRVT---SELSPHLRFGEISPRQV-WHAANHYADAHPGQGKTASKF 288
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+L WRE+ + + H + + PW + K L W+ GQTG+P +D
Sbjct: 289 MAELGWREFAHHILFHARDLKSVPLQGQFTDFPW-----DDDPKALERWQRGQTGFPIVD 343
Query: 289 AVMRQL-------------------RRLL-----------DCTYCVCPVNF--------- 309
A MR+L + LL D CP N
Sbjct: 344 AGMRELWHTGYMHNRVRMIVGSVLVKHLLIHWREGLAWFDDTLVDACPANNPFSWQWIGG 403
Query: 310 -----------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
G + DPDG Y++++VPEL P QYI++PW+A + + A
Sbjct: 404 CGADAAPYFRIFNPVLQGEKFDPDGRYVRQWVPELSDMPAQYIHKPWEASPLILKAAGVD 463
Query: 353 ISKDYPERIVN 363
+ + YPE ++
Sbjct: 464 LGQSYPEPLIG 474
>gi|374576149|ref|ZP_09649245.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. WSM471]
gi|374424470|gb|EHR04003.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. WSM471]
Length = 495
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 102/276 (36%), Gaps = 70/276 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE A +L + L Y+ ++ PD G TS S L FG LS R+
Sbjct: 219 WTPGEASARARLRDFLKHTASG-----YVGDRDRPDREG--TSHLSPHLSFGELSPRQV- 270
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
W + P +L WRE+ + +P PW P++
Sbjct: 271 WHAARFAAAENPAIGPGVDKFLSELGWREFCRHLLHDHPNLATENLQANFDGFPWKPDA- 329
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------------------- 294
K L AW+ G+TGYP +DA +R+L
Sbjct: 330 ----KALAAWQRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGESWF 385
Query: 295 -RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFP 331
L+D P N+ G + DPDG Y++R+VPELR P
Sbjct: 386 WDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGAYVRRWVPELRDVP 445
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+ I++PW+A A + K YP+ IV+H +
Sbjct: 446 AKLIHQPWRATPIELASAGVTLGKSYPQPIVDHAKG 481
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 107/290 (36%), Gaps = 74/290 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVR 204
W GG + +E+F +G Y S + PD P TS+ S L+FG +S R
Sbjct: 197 WAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRPD--KPLTSKLSPHLRFGEISPR 254
Query: 205 RFYWALHDHFNTIHEGRPPSHF--NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
+ + A H PP +L WRE+ + + P + L PW
Sbjct: 255 QVWTAARHH--------PPGGGMDAFLRELGWREFCHHLLFQAPTMAEEPLKAEFLAFPW 306
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------------------------- 294
L AW++G+TGYP +DA MR+L
Sbjct: 307 TEAKEIGPA--LAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMIAASFLIKDLLIPWQH 364
Query: 295 --RRLLDCTYCVCPVNF--------------------------GRRLDPDGIYIKRYVPE 326
R D CP N G R DP+G Y++R++PE
Sbjct: 365 GERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQGERFDPEGAYVRRWLPE 424
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
L P I+ PW+AP + +A + K YP +++H A + + L
Sbjct: 425 LADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHARVRALEALA 474
>gi|296128975|ref|YP_003636225.1| deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
20109]
gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
20109]
Length = 457
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 66/192 (34%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+L WRE+ + H+P + + W + P ++ AW +G+TGYP +DA
Sbjct: 262 ELAWREFHADVLWHHPAAARTSLREVVPQDAW--ATGPPADRAFAAWTDGRTGYPLVDAG 319
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MRQLR R++ ++ V
Sbjct: 320 MRQLRAQGWVHNRVRMVVASFLVKDLHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTG 379
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
PV R+ DPDG Y++R+VPELR P + ++EPW P G +
Sbjct: 380 RDAAPYFRVFNPVTQARKFDPDGTYVRRWVPELRDVPDRAVHEPWTLPGG--------LP 431
Query: 355 KDYPERIVNHVQ 366
YPER+V+H
Sbjct: 432 AGYPERVVDHAH 443
>gi|424814672|ref|ZP_18239850.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339758288|gb|EGQ43545.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 268
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 58/206 (28%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+L W+++F NP NP+ ++ ++H ++ +N+WK G+TG+P IDA
Sbjct: 27 RLFWQQHFNQKIEDNPDLFNEAINPVYRDL--WKDNHSQQK--INSWKKGETGFPLIDAS 82
Query: 291 MRQL----------------------------------RRLLDCTYCVC----------- 305
MR L + L+D +
Sbjct: 83 MRALTKTGWLNFRMRAMCASFFSYILKQWWKIGADHYYKHLIDADVAINYYQWQMQSGLV 142
Query: 306 ---------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
P + DP G +I++YVPELR P +YI+ PWK P QEK N I +D
Sbjct: 143 GVHANRIYNPTKQAKENDPKGRFIRKYVPELRPVPDKYIHTPWKMPDQTQEKLNIEIGED 202
Query: 357 YPERIVNHVQASLENKQYLKKEKANC 382
YP ++++ + S +++QY +++ +
Sbjct: 203 YPRPVIDYDRESKKSRQYFQRKSSEA 228
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 78/277 (28%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP--TSQSAALKFGCLSVRRF 206
W GE AL +L E + + +K + D + S L FG +S RR
Sbjct: 203 WRAGEHAALERLAEFAKKRVRDYK--------IDRDFMAREGVSRMSPHLHFGEVSPRRI 254
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+ I E + ++ WRE+ + + NP + + + PW ++
Sbjct: 255 W-------AEITEAAGDAGAAYLREIGWREFCHHLLVANPQMPERALDERFRDFPWREDA 307
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV------------- 304
L AW+ GQTGYP +DA MR+L R++ ++ V
Sbjct: 308 -----AALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAASFLVKHLLIPWQEGERW 362
Query: 305 ----------------------C------------PVNFGRRLDPDGIYIKRYVPELRQF 330
C PV G + DP+G Y++RYVPEL +
Sbjct: 363 FWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGDYLRRYVPELARL 422
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++I+ PW+AP V A + + YP IV+H +A
Sbjct: 423 DARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKA 459
>gi|398830139|ref|ZP_10588333.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
gi|398215848|gb|EJN02409.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
Length = 489
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 106/282 (37%), Gaps = 84/282 (29%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A KL++ L + S+K+G + T + S L G ++
Sbjct: 216 WTPGEEGAREKLSDFLDDRVPSYKNGRDIPG------TEATSRLSPHLAHGEITP----- 264
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLI-------WREYFYTMSAHNPYYDQMEKNPICLNIP 261
F H + P+ + G L WRE+ Y + +NP N
Sbjct: 265 -----FQIWHASKSPAIKDQNGGLDTFLKEVGWREFSYHLLFNNPKLHTENFNKSFDGFE 319
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------- 304
W K + +AWK G TGYP +DA MRQL R++ ++ +
Sbjct: 320 W-----SRKVSHFDAWKQGNTGYPIVDAGMRQLWQTGWMHNRVRMIAASFLIKHLLIDWR 374
Query: 305 ---------------------------------------CPVNFGRRLDPDGIYIKRYVP 325
P+ G + DP+G Y+++++P
Sbjct: 375 KGEEWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPNGRYVRQFIP 434
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
L+ P +Y+++PW AP + AN + KDYPE IV H A
Sbjct: 435 ILKDLPDKYLHKPWTAPAATLKAANIDLGKDYPEPIVEHGTA 476
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/453 (22%), Positives = 170/453 (37%), Gaps = 106/453 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLL+ + +L + L+ G L I +G P I ++ +EL + F Q
Sbjct: 52 FPKT---GNFRSQFLLQSIDNLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQ 108
Query: 62 DC--EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV----TFGTMS 115
+ E +K T Q L F + P +D+ F F
Sbjct: 109 EVTSEEIK----VETALEKALTQMGVKLNPFWGTTLYHP---DDLPFTLAEIPELFTNFR 161
Query: 116 ESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALI 158
+ ++++ + T P P++ P +D G+ ++ ++GGE+E +
Sbjct: 162 KQVEKKSLINSTFPTPKKLPSLPNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIK 221
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNT 216
+LN+ Q K+ + + + G S S L GCLS R Y + +
Sbjct: 222 RLNQYFWQ-----KNRLKDYKETRNGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKY--E 274
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--L 274
+ + S + + +L+WR+YF + A + N+PW KE +
Sbjct: 275 LERVKNDSTYWLIFELLWRDYFRFICAKHGNKVFYSSGLQGFNLPW-------KEDWQRF 327
Query: 275 NAWKNGQTGYPFIDAVMRQLRR----------------------------------LLDC 300
W+ G TGYP +DA M +L L+D
Sbjct: 328 QLWQTGNTGYPLVDANMTELAATGFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDY 387
Query: 301 TYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
C N+ + DP G Y++ ++PEL+ P I+EPW
Sbjct: 388 DVCSNYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPW 447
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENK 372
K Q++ + DYP IV+ ++ N+
Sbjct: 448 KLSQAEQKQYRVNLGVDYPRPIVDFFKSIKANE 480
>gi|405377862|ref|ZP_11031797.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
gi|397325650|gb|EJJ29980.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
Length = 484
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/449 (24%), Positives = 165/449 (36%), Gaps = 112/449 (24%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQG----SPISIFQKLKRELNF----- 54
GT +G + +L L LD LK HGG+L + G + I ++ E F
Sbjct: 48 GTGPLGAAQAWWLHHSLHALDAALKKHGGKLILASGHARHALADIIRRSGAEAVFWNRRY 107
Query: 55 --------TKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS--------GLPP 98
T+L E + + ++ H P + ++R + G P
Sbjct: 108 DPPGIAIDTRLKHEFEKQAIEARSFGGQLLHEPTRLKTTSGTSYRVYTPFWRALEEGGEP 167
Query: 99 RPKEDI--DFRHVTFGTMSESLQREVSLFQTVP-KPEQFHKYPEMDFGDPLIRWLGGETE 155
D+ FR SE L + ++ +P KP +P+M W GE
Sbjct: 168 EAPVDVPERFRFPKQFPASEVL----ASWKLLPLKPNWAKSFPDM--------WTPGEAA 215
Query: 156 ALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
A E+LS +E SG Y +++ P T + S L G +S R + D
Sbjct: 216 A----QEKLSAFVEDGLSG-YSADRDFPGKTAT-SLLSPHLALGEISPARIW----DATE 265
Query: 216 TIHEGRPPSHF-NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
+ P +L WRE+ Y + H P + N W + E
Sbjct: 266 GLSRRIPSDDIVRFRKELAWREFSYHLLFHFPELARDNWNDSFDGFGWRED-----EDGF 320
Query: 275 NAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------------- 304
+AW NGQTGYP +DA MRQL R++ ++ +
Sbjct: 321 HAWCNGQTGYPIVDAGMRQLWRHGWMHNRVRMITASFLIKDLLVDWRRGEAWFRDTLVDA 380
Query: 305 --------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
P+ G + D DG YI+++VPEL + +YI+ P
Sbjct: 381 DPASNAASWQWVAGSGADASPFFRIFNPMLQGEKFDADGSYIRQFVPELGKLEDKYIHRP 440
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQA 367
++AP V E A + K YP IV+H A
Sbjct: 441 FEAPASVLENAGVTLGKTYPRPIVDHATA 469
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/431 (21%), Positives = 158/431 (36%), Gaps = 97/431 (22%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L + L L ++ GG L + +G + ++ R + T + + + + P+QS
Sbjct: 54 WLAQSLRALGADIRRRGGSLILRKGPAAGVIPEVARAIGATAVYWNEVAQA--PHQSVEK 111
Query: 75 GSHPPRYQ-PCKTLLNFRDLSGLPP--RPKEDIDFRHVTFGTMSESLQREVSLF---QTV 128
+ + + DL P R KE R + +R ++L + +
Sbjct: 112 ALEAALAKLGIDSHIFPGDLLVAPSAIRNKEGRGLR-----VFTPFWRRVLALGDPPKPL 166
Query: 129 PKPEQFHKYPEM---------------DFGDPLIR-WLGGETEALIKLNERLSQEIESFK 172
P P++ P++ D+ L W GE A +L + L S
Sbjct: 167 PAPKELRAGPKITSDALESWKLEPSKPDWAGGLRESWEPGEASARTRLRDFLKHTAHS-- 224
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
Y ++ PD G +S S L+FG LS R+ W + P +L
Sbjct: 225 ---YAGDRDRPDRKGT-SSLSPHLRFGELSPRQV-WHAARFAAAENPAIGPGVEKFLSEL 279
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
WRE+ + +P + PW P+ + L AW+ G+TGYP +DA +R
Sbjct: 280 GWREFCRHLLHDHPDLATVNLQANFDGFPWKPD-----KTALAAWQRGRTGYPIVDAGLR 334
Query: 293 QL----------------------------------RRLLDCTYCVCPVNF--------- 309
+L L+D P N+
Sbjct: 335 ELWHTGVMHNRVRMVVASFLVKHLLIDWRVGESWFWDTLVDADAGSNPANWQWVAGCGAD 394
Query: 310 -------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
G + DPDG Y++R+VPEL+ P + I++PW+A A + K
Sbjct: 395 AAPYFRVFNPQLQGEKFDPDGTYVRRWVPELKDMPAKLIHQPWQATPIELASAGVTLGKT 454
Query: 357 YPERIVNHVQA 367
YP+ IV+H +
Sbjct: 455 YPQPIVDHAKG 465
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/459 (21%), Positives = 181/459 (39%), Gaps = 116/459 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +A+L + L+ G L + +G P I +L +EL + F +
Sbjct: 50 FPKT---GNFRGQFLLESVANLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHE 106
Query: 62 DC--EGVKPYQSFPTGSHPPRYQP----CKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS 115
+ E K + P + + TL ++ DL P E V F +
Sbjct: 107 EVTSEETKVEKKVKQALKPLKVKVPGFWGATLYHWNDL------PFEVNQLPEV-FTSFR 159
Query: 116 ESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALI 158
+ +++ ++ T+ P + P+++ G+ ++ + GGET +
Sbjct: 160 KKVEKNSTVNPTLITPRKLLSLPDVEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIK 219
Query: 159 KLNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
+L + + +E + G S++ SP L GCLS R Y +
Sbjct: 220 RLQDYFWERNCLKEYKETRNGMLGADYSSKFSP-----------WLAHGCLSPRYIYEEV 268
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ + S + + +L+WR+YF + A + + L+IPW ++
Sbjct: 269 QKY--EEERVKNNSTYWLIFELLWRDYFRFICAKHGNKIFYKSGLQGLDIPW----KEDQ 322
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRRL--------------------------------L 298
++++ W+ G+TGYP +DA MR++ L
Sbjct: 323 DRFI-LWQEGKTGYPLVDANMREIAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESL 381
Query: 299 DCTYCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQY 334
Y VC N+G + D G Y++ ++PEL+ P
Sbjct: 382 LIDYDVCS-NYGNWNYTAGVGNDARGFRYFNIPKQSKDYDSKGDYLRHWLPELKMIPGDK 440
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
I+EPWK Q++ N I DYP+ +V+ ++ N++
Sbjct: 441 IHEPWKLSQDEQKRYNVRIGVDYPKPVVDFFKSVKANEK 479
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 72/252 (28%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT--GQ 231
Y ++ P + G + S L FG +S+R+ + A +G P S T +
Sbjct: 223 AAYEKDRDIPSIKGT-SRLSPFLSFGQISIRKVWAAC--------QGMPSSTGKATFLKE 273
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291
L WR++++ + +P E N+ W E+ L W+ GQTGYP IDA M
Sbjct: 274 LAWRDFYHMIYFSHPEQKNYELIEKYRNMDW-----RKNEEELTKWQAGQTGYPIIDAAM 328
Query: 292 RQL----------------------------------RRLLDCTYC-------------- 303
RQL R+L+D
Sbjct: 329 RQLNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGT 388
Query: 304 --------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISK 355
P+ G++ D DG +IK++VPEL Q P+++I+EP+ Q ++
Sbjct: 389 DAVPYFRIFNPITQGKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGT 448
Query: 356 DYPERIVNHVQA 367
DYP IV+H +A
Sbjct: 449 DYPLPIVDHNEA 460
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/445 (22%), Positives = 168/445 (37%), Gaps = 105/445 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ-- 61
GT +G + +L L LD L+ G L + G + + + L R+ + + + +
Sbjct: 47 GTGPLGAAQSWWLHHSLEALDGSLRKRRGGLLLASGEALGVLRSLIRQSDADAVFWNRRY 106
Query: 62 DCEGVK---------PYQSFPTGSHPPR--YQPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
D G+ Q+ S + ++P + + SG P R +R +
Sbjct: 107 DPPGISIDAHIEHELEKQAIEVKSFGGQLLHEPSQLMTG----SGTPYRVYTPF-WRALE 161
Query: 111 FGTMSESLQ--REVSLFQTVPKPEQFHKYPEM--------DFGDPLIRWLGGETEALIKL 160
E L ++ L +P E+ + + +F D W GE A KL
Sbjct: 162 RSIEPEPLDIPSKLQLASKLPGSEKLESWKLLSTQPDWASNFAD---LWTPGEEGAQEKL 218
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHE 219
+ ++ +K N+ P P TS S L G +S R + D + +
Sbjct: 219 RTFIEDRLDGYKE-----NRDYP--AKPATSMLSPHLALGEISPARIW----DATRGLSK 267
Query: 220 GRPPSHF-NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
P + + ++ WR++ Y + AH P + W + E+ NAW
Sbjct: 268 HLPAADIVHFRKEIAWRDFSYHLLAHFPRLATANWDDRFDRFEW-----GSAEEDFNAWS 322
Query: 279 NGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------- 304
G TGYP +DA MRQL R++ ++ +
Sbjct: 323 RGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPAN 382
Query: 305 ----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
PV G + DPDG +++ +VPELR+ +YI+ P++AP
Sbjct: 383 NAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAP 442
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
V + A+ I+ + YPE +V+H A
Sbjct: 443 KSVLDAADVILGETYPEPVVDHAGA 467
>gi|389862600|ref|YP_006364840.1| deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
gi|388484803|emb|CCH86343.1| Deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
Length = 456
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 101/251 (40%), Gaps = 74/251 (29%)
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y + +P G TS+ SA LK+GC+ R L H + R T +L W
Sbjct: 211 YAEGRNTPGTNG--TSRLSAYLKYGCVHPRTLVADLAAHDDGGESVR-----RYTDELAW 263
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFI------- 287
R+++ + H P + P ++ + +S P+ ++ L AW+ G+TG+P +
Sbjct: 264 RDFYADVLWHRPDSARAYLKPELQSMAY--DSGPHADELLEAWRTGRTGFPIVDAGMRQM 321
Query: 288 --DAVMRQLRRLLDCTYCV----------------------------------------- 304
+A + R++ ++ V
Sbjct: 322 LGEAYVHNRVRMIVASFLVKDLHQEWTVGARVFMQHLVDGDLASNQHGWQWVAGTGTDAS 381
Query: 305 ------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV G++ DPDG Y+KR+VPELR +Y++EPW AP G I YP
Sbjct: 382 PYYRVFNPVTQGKKFDPDGTYVKRWVPELRDLDAKYVHEPWTAPGG--------IPAGYP 433
Query: 359 ERIVNHVQASL 369
E +V+H L
Sbjct: 434 EPVVDHAHERL 444
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 108/271 (39%), Gaps = 73/271 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L + +K G P LT + S L FG +S + +W
Sbjct: 202 WEHGEKAAQNRLYAFFEDGLSDYKDGRNF-----PALTHT-SRLSPHLHFGEISPNQIWW 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L H E R HF +L WRE+ Y++ +NP + N N PWL +
Sbjct: 256 VLGSH----EETRDIDHFR--SELGWREFSYSLLFNNPSLPKSNLNEKFDNFPWLSD--- 306
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRL------ 313
++ L AW+ GQTG P +DA MR+L R++ ++ V + RL
Sbjct: 307 --DQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVGSFLVKNLLLDWRLGEEWFW 364
Query: 314 -----------------------------------------DPDGIYIKRYVPELRQFPI 332
D G Y +R++PEL+ P
Sbjct: 365 DCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAHGDYTRRFLPELKDLPD 424
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+Y+++PW+AP V + A + ++YP IV+
Sbjct: 425 KYLFKPWEAPKDVLKGAGVTLGENYPLPIVD 455
>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M49 591]
Length = 381
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 108/271 (39%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 129 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 182
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 183 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 228
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFG-------- 310
+ WK G+TGYP +DA M QL+ R++ ++ +C G
Sbjct: 229 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQL 288
Query: 311 -----------------------------------RRLDPDGIYIKRYVPELRQFPIQYI 335
+R DP G +IK Y+P+L P +Y+
Sbjct: 289 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYL 348
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK P +QE +CII DY + IV+H +
Sbjct: 349 HEPWKMPKNLQESVSCIIGTDYAQPIVDHAK 379
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 108/455 (23%), Positives = 175/455 (38%), Gaps = 108/455 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF-- 59
FP T G R +FLLE +ADL + L+ L + QG P ++ +L + LN + F
Sbjct: 47 FPKT---GPFRAQFLLESVADLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNR 103
Query: 60 EQDCEGVKPYQSFPT-----GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTM 114
E E + T G R+ TL + L P P ++ F
Sbjct: 104 EVTAEEINVETRLRTALADLGIECLRFW-SSTLFHPEQL----PFPIRELPEVFTQFRKQ 158
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFG---------------DP--LIRWLGGETEAL 157
E + + F P P+ P++D G DP ++++ GGET AL
Sbjct: 159 VEKSAKPKAPF---PAPQSLSALPDIDPGELPQLEDWGLSSPKLDPRAMMQFSGGETAAL 215
Query: 158 IKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
+L + + ++ ++ +K + + P+ + T S GC+S R +H
Sbjct: 216 ARLQDYIWEQDCLKQYKET--RNGMLQPNNS---TKFSPWFALGCVSPR----YIHQQVK 266
Query: 216 TIHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S + + +LIWR+YF + A + L +PW N+E +
Sbjct: 267 AYEQERVKNNSTYWLIFELIWRDYFRFICAKHGKRVFRLSGLQGLALPW----QDNRETF 322
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR----------------------------------LLD 299
W+ GQTG+P IDA MR+L L+D
Sbjct: 323 -EKWQTGQTGFPLIDANMRELAATGFMSNRGRQNVASFLTKNLGLNWQMGAEWFESCLID 381
Query: 300 CTYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
C N+ + DP G Y++ ++PEL+ P + P
Sbjct: 382 YDVCSNWGNWNYAAGVGNDARGFRFFNIVKQAKDCDPQGDYVRHWLPELQNVPGGQVQTP 441
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
W+ QE + KDYPE +V+ Q++ N+Q
Sbjct: 442 WQLTALEQEMFGLTVGKDYPEPMVDLWQSAKVNEQ 476
>gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
nagariensis]
gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
nagariensis]
Length = 914
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 71/299 (23%)
Query: 147 IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
+W G A+ +L +++ + F+ + +V D T + S + G +SVR
Sbjct: 217 FKWKPGVGGAIAELERFVTERLHVFE---HDRAKVDRDST---SRLSPWIHIGSISVRYI 270
Query: 207 YWALHD---HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
++ + + R S + Q+ +REY +S H P+ + PW
Sbjct: 271 FYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSFHFPFIHERSLLRHLRACPWR 330
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCV----CPVNFG 310
+ H K AW+ GQTGYP +DA MRQL R++ ++ V P +G
Sbjct: 331 IDQHAFK-----AWRQGQTGYPIVDAAMRQLWSSGWCHNRARVVAASFLVKNLLLPWQWG 385
Query: 311 -------------------------------------------RRLDPDGIYIKRYVPEL 327
RR DPDG Y++R++P L
Sbjct: 386 LKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFDPDGEYVRRWLPVL 445
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINK 386
+ P +YI+ PWKAP V A+ + +YP I++H A + N +Y C++ +
Sbjct: 446 SRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDARV-NVEYACSVLDKCVVAQ 503
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/436 (23%), Positives = 163/436 (37%), Gaps = 113/436 (25%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R FL+E L +L ++ + G +L +V+G P+++ +L +++ + + +D V+PY
Sbjct: 56 RLWFLIESLVELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRD---VEPYAR 112
Query: 72 FPTGSHPPRYQPC--KTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQ--T 127
+ Q K ++++ L P K + +G + + +V Q T
Sbjct: 113 ERDRQVAKKLQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPST 172
Query: 128 VPKPEQF-----HKYPEMDFGDPLIRWLG-----------GETEALIKLNERLSQEIESF 171
V P + P ++ + L G GE AL +LN SF
Sbjct: 173 VAAPTGLVDLDPAQLPALESLEALRESHGFKGAEICPCRPGEAAALAQLN--------SF 224
Query: 172 KSGVYLSNQVSPDLTGPPTSQ----SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN 227
G L+ + PD P T+ SAAL G LS R+ + A D + + R H
Sbjct: 225 CDGPLLAYE--PDRNFPGTAGTSYLSAALSVGTLSPRQAWCAAQD---SREQARSEEHLQ 279
Query: 228 ITG----QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+L WRE++ H P PW N E + + WK GQTG
Sbjct: 280 AIAVWEQELGWREFYQQALFHFPELADGPYREKWHRFPW-----ENNEDWFDFWKEGQTG 334
Query: 284 YPFIDAVMRQLR---------RLLDCTYCV----CPVNFGRR------------------ 312
P IDA MRQL R++ +Y V C +G R
Sbjct: 335 MPIIDAAMRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGW 394
Query: 313 ------------------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
D G YI+++VPELR + + +G E+
Sbjct: 395 QWSASSGMDPKPLRIFNPATQASKFDSAGDYIRQWVPELRHVNTKDLL---SGEIGALER 451
Query: 349 ANCIISKDYPERIVNH 364
+DYPE +V+H
Sbjct: 452 ------RDYPEPLVDH 461
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 61/248 (24%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y S + P + GP + S L+FG +S+R D G + + +L+WR
Sbjct: 232 YDSTRDFPAVKGP-SYLSVHLRFGTVSIRALVRRALDAMRIGAGGTGAAVW--LSELVWR 288
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR 295
++++ + +P+ + P I W E+ P+ E+ AW +G+TGYP +DA M QL
Sbjct: 289 DFYFMILYQHPHVRERAFKPDYDAIIW--ENGPHAEELFQAWCDGRTGYPLVDAAMAQLN 346
Query: 296 ---------RLLDCTYCV-------------------------------------C---- 305
R++ ++ + C
Sbjct: 347 QTGYMHNRLRMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQP 406
Query: 306 ------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
P+ + DPDG +I+RY+P+L + + I+ PW+ P + A + +DYP
Sbjct: 407 YFRIFNPLTQSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPH 466
Query: 360 RIVNHVQA 367
++ H +A
Sbjct: 467 PLLQHDEA 474
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 165/453 (36%), Gaps = 118/453 (26%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN------FTKL 57
G G R +FL+E + DL L+ G LF+ QG P ++ +L E T
Sbjct: 48 GLAKTGPYRAQFLIESVRDLRGSLREAGSDLFVRQGKPENVVSELAAEHGADIVHYHTTP 107
Query: 58 CFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDID------FRHVTF 111
E+ R KTL + DL P E ID R V
Sbjct: 108 ATEERAVEASVTDGLDEHGISSRGFWGKTLYHIEDL----PTRVERIDDTFTPWRRTVED 163
Query: 112 G-TMSESLQ--REVSLFQTVPKPEQFHKYPEM-----DFG--------DPLIRWLGGETE 155
G T+ + L V+L +TV E P D G I + GGE+
Sbjct: 164 GATVRDPLDAPTSVTLPETVSDAEGAGDEPGTIPTPGDLGIEEHEPDERAAIDFAGGESA 223
Query: 156 ALIKLNERLSQ-----EIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
L +L E + + E + ++G+ ++ S SA L GCLS R +
Sbjct: 224 GLRRLTEYVWEGDHLREYKETRNGLLDADYSS--------KFSAWLALGCLSPR----LI 271
Query: 211 HDHFNTIHEGR--PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW----LP 264
H+H R S + + +L+WR+ F T Q EK+ +P +
Sbjct: 272 HEHVERYECERISNDSTYWLVFELLWRD-FMTF--------QFEKHGSDFFMPTGIRDIE 322
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR----------------------------- 295
+S E W G+TG PF+DA MR+L
Sbjct: 323 KSWQRDEAAFERWAAGETGVPFVDANMRELNETGFMSNRGRQNVASFLADALGIDWRLGA 382
Query: 296 -----RLLDCTYCVCPVNF--------------------GRRLDPDGIYIKRYVPELRQF 330
RL+D C N+ G+R DP+ YI+ ++PEL
Sbjct: 383 AYFESRLVDYDVCSNWGNWAYQAGVGNDSRDGYFDVLDQGKRYDPNAAYIRHWLPELDAL 442
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
P +EPW+ G QE + + +DYPE ++N
Sbjct: 443 PADACHEPWQLSPGQQEMYDVELDEDYPEPMIN 475
>gi|407775677|ref|ZP_11122970.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
gi|407281354|gb|EKF06917.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
Length = 492
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 126/304 (41%), Gaps = 91/304 (29%)
Query: 147 IRWLGGETEALIKLNERLSQEIESFKSGVY--LSNQVS--PDLTGPP----TSQ-SAALK 197
+ W GG L ER S + K ++ + ++++ DL P TS+ S L+
Sbjct: 204 VNWAGG-------LEERFSPGEQGAKDQLFDFIDDRLTDYADLRDRPDRRVTSELSPHLR 256
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
FG +S + W +H+ + G+ + +L WRE+ AH+ Y + +
Sbjct: 257 FGEISPYQV-WHAANHYADANPGKGKTASKFIAELGWREF-----AHHILYHATDLRSVP 310
Query: 258 L-----NIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------ 294
L + PW ++ K L AW+ GQTG+P +DA MR+L
Sbjct: 311 LQGQFKHFPWSDDA-----KGLRAWQKGQTGFPIVDAGMRELWHTGYMHNRVRMIVGSIL 365
Query: 295 -RRLL-----------DCTYCVCPVNF--------------------------GRRLDPD 316
+ LL D CP N G + DP
Sbjct: 366 VKHLLIHWRDGLAWFDDTLVDACPANNPFSWQWIGGCGADAAPYFRIFNPVLQGEKFDPK 425
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQ 373
G Y++++VPELR P QYI++PW+A + + A+ + K YPE ++ + +LE Q
Sbjct: 426 GEYVRQWVPELRDMPEQYIHKPWEASPLILKAADVTLGKTYPEPLIGLKEGRERALEAYQ 485
Query: 374 YLKK 377
+KK
Sbjct: 486 DMKK 489
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 113/281 (40%), Gaps = 69/281 (24%)
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEG 220
+RL + ++ SG Y + PDL P S+ S L FG +S ++ W+ H
Sbjct: 206 DRLIEFLDHGLSG-YGDKRNRPDL--PNVSRLSPHLHFGDISPKQV-WSATQHATARKSS 261
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
++ WRE+ Y + H P + P PW E+ L W+ G
Sbjct: 262 LSSDGHKFLSEIAWREFSYHLLYHYPQLPEKNWRPAFDAYPWR-----ESEEDLKKWQTG 316
Query: 281 QTGYPFIDAVMRQLR---------RLLDCTYCV--------------------------- 304
TGYP +DA MR+L R+L ++ V
Sbjct: 317 LTGYPMVDAGMRELWHTGYMHNRVRMLAGSFLVKHLRLHWKHGEAWFRDTLVDADLANNS 376
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P++ G + DPDG Y++R+VPEL + P ++++ P++AP
Sbjct: 377 ASWQWVAGSGADAAPYFRIFNPISQGPKFDPDGKYVRRWVPELAKLPTKHLFSPFEAPAS 436
Query: 345 VQEKANCIISKDYPERIVNHV---QASLENKQYLKKEKANC 382
V +A + + YP IV+H QA+L+ + +K +
Sbjct: 437 VLSEAGVRLGETYPYPIVDHGKARQAALDGYEDVKSAGKDA 477
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 116/289 (40%), Gaps = 73/289 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE A +L L + ++ + L N+ PDL P S+ S L FG +S R+ +
Sbjct: 197 WTPGEAGASERLGSFLEEGLKGYGK---LRNR--PDL--PNVSRLSPHLHFGEISPRQIW 249
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
A D + ++ WRE+ + + H P PW
Sbjct: 250 HATQDVMDR-RSSLGDDGMKFLSEIAWREFSHNLLYHFPKLPSENWRSTFDEYPW---KE 305
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
P+ E L W+ GQTGYP +DA MR+L R++ ++ +
Sbjct: 306 PDGE--LEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAASFLIKHLRLHWRHGEAWF 363
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P+ G + DPDG YI+++VPELR+
Sbjct: 364 RDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKFDPDGNYIRQWVPELRELD 423
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV---QASLENKQYLKK 377
+Y++ P+ AP +KA + YP+ +V+H +A+LE + +K+
Sbjct: 424 TRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALEGYEAVKQ 472
>gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a]
gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Frankia alni ACN14a]
Length = 451
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 159/434 (36%), Gaps = 94/434 (21%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R FL CL +LD +L GG+L + +G P+ + ++ R ++ ++ D P
Sbjct: 45 GPVRLAFLYRCLRELDDRL---GGRLCVRRGDPVDVVPEVARAVDARRVHISAD---YGP 98
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE--SLQREVSLFQ 126
Y G + L R S P F + +E +
Sbjct: 99 YGRRRDGEVEQALRAGGREL-VRTGSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWRR 157
Query: 127 TVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQE-IESFKSGVYLSNQVSPDL 185
V +P G P LGG L ER ++E + F +G D+
Sbjct: 158 PVAEPVGARWALLASDGIPADPDLGGTR--LPAAGERAARERLAEFLAGSLTGYAERRDV 215
Query: 186 TGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSA 243
G T+ S LK+GC+ R L + P +L WRE++ + A
Sbjct: 216 PGQDTTSRLSPYLKYGCIHPRTVLAELDRATS------PRDAEKFRSELAWREFYAEVLA 269
Query: 244 HNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------- 295
NP + + ++ + P E AWK G+TG+P +DA MRQL
Sbjct: 270 ANPASARADLTGALADMAYDP-----PEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNR 324
Query: 296 -RLLDCTYCVC------------------------------------------------P 306
R+++ ++ VC P
Sbjct: 325 VRMIEASF-VCKDLHVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNP 383
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G R DPDG Y++R++P+LR P ++EPW P G YP +V+H
Sbjct: 384 VSQGHRYDPDGTYVRRWIPQLRDVPAAKVHEPWTLPGG--------PPAGYPAPVVDH-- 433
Query: 367 ASLENKQYLKKEKA 380
+ E ++ L + +A
Sbjct: 434 -ATERRESLARYEA 446
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 64/249 (25%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R A H + R + + +L+WR
Sbjct: 246 YHARRDFPAVRGP-SYLSTHLRFGTVSIRTL--AARAHAAMLRGSRGAATW--LSELVWR 300
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV---- 290
++++ + H P D +P I W+ + AWK QTGYP +DA
Sbjct: 301 DFYFMILHHRPDLADGAAFHPEFDRIRWVDGD--TGDARFEAWKGAQTGYPLVDAAMLQI 358
Query: 291 -----MRQLRRLLDCTYCV-------------------------------------C--- 305
M R++ ++ + C
Sbjct: 359 FQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQ 418
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +YI+ PW AP V ++A ++ + YP
Sbjct: 419 PWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEAGVVLGETYP 478
Query: 359 ERIVNHVQA 367
I++H A
Sbjct: 479 RPIIDHAGA 487
>gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
13855]
Length = 537
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 107/280 (38%), Gaps = 74/280 (26%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ----SAALKFGCLSVRRFY 207
GE EA L+ L + S++ + GP ++ S L +G +S+RR
Sbjct: 236 GEAEAHRTLDSFLRERGRSYRRAM--------SRPGPAQTECSRISVHLAYGTISLRRVV 287
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP--- 264
+ L + P L + + H+ + ++E P N ++P
Sbjct: 288 YELRRRQEELRGANGPDAAARRKAL--SSFDSRLHWHSHFTQKLEDAPRIENESYIPAFD 345
Query: 265 --ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--C------ 305
+ +AW +G+TG+P +DA MR LR R + C++ C
Sbjct: 346 ALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAMLCSFAAYDCWLDWRR 405
Query: 306 -------------------------------------PVNFGRRLDPDGIYIKRYVPELR 328
PV G+ DPDG +I+R+VPEL
Sbjct: 406 FAPTYGGLMADYVPGIHYPQVQMQSGTTGINRVRIYNPVKQGKEQDPDGTFIRRWVPELS 465
Query: 329 QF-PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
Y++ PWK Q+ A C+I KDYPER+V+H A
Sbjct: 466 HLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDA 505
>gi|381394101|ref|ZP_09919819.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330373|dbj|GAB54952.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 469
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 71/272 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W E A KL + Q IE Y ++ P + G TSQ S FG +S + +
Sbjct: 196 WNVSEQGAQCKLEYFIKQAIEE-----YNDDRNVPSVAG--TSQLSPYFHFGLISPNQAW 248
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+A+HD FN E + + +L WRE+ Y + H N N PW+ +
Sbjct: 249 YAVHDAFNGSRENK--GVYVYLSELGWREFSYYLLFHFNDIQNRNFNTKFDNFPWVQD-- 304
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
++ L AW+ G+TG P +DA MR+L R++ +Y V
Sbjct: 305 ---KEGLRAWQQGKTGVPIVDAGMRELYQTGYMHNRVRMIVASYLVKNLLIDWREGERWF 361
Query: 305 --C-------------------------------PVNFGRRLDPDGIYIKRYVPELRQFP 331
C P+ G + D +G Y+K+Y PEL +
Sbjct: 362 WDCLLDADSASNSAGWQWVAGSGADASPYFRIFNPILQGEKFDKEGAYVKKYCPELSKLG 421
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+++++PW+A AN ++ KDYP+ IV+
Sbjct: 422 KKFLHKPWEASEQELLSANIVLGKDYPKPIVD 453
>gi|395763919|ref|ZP_10444588.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium lividum PAMC
25724]
Length = 487
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 61/245 (24%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
P L GP + S L+FG +S+R ++ D + G + +LIWR+++ +
Sbjct: 237 PALKGP-SYLSMHLRFGTVSLRYLVRSVVDLMDRGSGGDGAPVW--LAELIWRDFYAMIL 293
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
NP+ P I W E+ + AW G+TGYP +DA M QL
Sbjct: 294 YQNPHVAGAAFKPAYDAIAW--ETGLEADAAFAAWCEGRTGYPLVDAAMAQLNQTGYMHN 351
Query: 296 RLLDCTYCVC-------------------------------------------------P 306
RL T C P
Sbjct: 352 RLRMVTACFLIKDLGIDWRRGEAYFALHLNDFDLASNNGGWQWASSSGCDSQPYFRIFNP 411
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V + D +G +I+RY+P+L+ + I+ PW P + E+ N ++ +DYPE +V H +
Sbjct: 412 VTQSEKFDANGRFIRRYLPQLKALGDKEIHAPWLVPRMLLEQKNIVLGRDYPEPLVQHDE 471
Query: 367 ASLEN 371
A E
Sbjct: 472 ARKET 476
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 112/283 (39%), Gaps = 68/283 (24%)
Query: 145 PLIRWLGGETEALIKLNERLSQEIESF-KSGV--YLSNQVSPDLTGPPTSQ-SAALKFGC 200
P I W G E + + QE+ F +S V Y++ + P L G TS+ S L FG
Sbjct: 221 PTIAWDTGFAERWVPGEKAARQELHRFLESPVFDYVTMRDLPALHG--TSRLSPHLHFGE 278
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
+S R + H P S ++ WRE+ + + H P + N
Sbjct: 279 ISPRTIWHETQRRLRQ-HSQDPTSAETFLKEVGWREFAHHLLFHFPNTPREPLRSEFANF 337
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------- 304
PW+ N L AW+ GQTGYP +DA MR+L R++ ++ V
Sbjct: 338 PWI-----NDNPRLKAWQTGQTGYPIVDAGMRELWTTGWMHNRVRMIVASFLVKDLLIPW 392
Query: 305 ----------------------------C------------PVNFGRRLDPDGIYIKRYV 324
C PV ++ D +G YI+R+V
Sbjct: 393 QKGAEWFWDTLVDADLASNTLGWQWTAGCGADAAPFFRIFNPVLQSQKFDAEGHYIRRWV 452
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PEL+ P ++I+ PW A V A + + YP IV+H +A
Sbjct: 453 PELKNLPTKWIHAPWTASQSVLTAAGVTMDQAYPLPIVDHDEA 495
>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
Length = 435
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 173/437 (39%), Gaps = 129/437 (29%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-----NFTKLCFEQDCEGVKPY 69
F+++ L DLD QLK +L I+QG P + +LK E ++T +D +
Sbjct: 53 FMVDSLLDLDMQLKHRSSRLHILQGYPEKVLPELKVEAIYFNEDYTPFSLNRDNAIRETM 112
Query: 70 QSFPTGSHPPRYQPCKTLL----NFRDLSGLPPRPKEDI--DFRHVTFGTMSESLQREVS 123
+ R + C+ LL +F G P D R + + + ++ ++
Sbjct: 113 RG--------RVKSCEDLLLTPKDFFVRKGKPYTVFTHFYNDARKLE---VRKPMKNDMR 161
Query: 124 LFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNE--RLSQEIESFKSGVYLSNQV 181
+ T+ P E++ G P GG E L +L L+ + +F GV + ++
Sbjct: 162 NYLTLDLPGTEVLKLEVERGIP-----GGRQEGLKRLERARNLNYSMRNF-PGVEGTTKL 215
Query: 182 SPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTM 241
SP +KFG +S R YWA+++ I QL WR+++ +
Sbjct: 216 SP-----------YIKFGVVSPREVYWAVNEE--------------IRRQLYWRDFYTLL 250
Query: 242 SAHNPYY--DQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---- 295
+ +NP+ ++ C IPW E +L AWK G+TGYP +DA MR+L
Sbjct: 251 AYYNPHVFGHSYKREYDC--IPW-----KWNEAHLEAWKQGKTGYPIVDAGMRELNETGF 303
Query: 296 -----RLLDCTYCVC----------------------PVNFG------------------ 310
R++ ++ V VN G
Sbjct: 304 MHNRTRMITASFLVKVLHVDWRIGERYFATKLVDYDPSVNNGNWQWVASTGADYMFRVFN 363
Query: 311 -----RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
R+ DPD +YIK +VPEL+ P + I+E ++ + YP IV++
Sbjct: 364 PWLQQRKFDPDAVYIKTWVPELKDLPAEKIHEIYRFKVS-----------GYPSPIVDYS 412
Query: 366 QASLENKQYLKKEKANC 382
+ + ++ + A C
Sbjct: 413 EEVKKARKMYEDSVALC 429
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 162/426 (38%), Gaps = 107/426 (25%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
N F+FLLE L DL RQ K+ GG+L++ G I +L +L + +D Y
Sbjct: 55 NAFQFLLESLEDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNED------YT 108
Query: 71 SFPTGSHPPRYQPCKTL-LNFRDLSGLPPRPKEDIDFR----HVTFGTM-SESLQREVSL 124
F CK L + F + + + + +V F +R +S+
Sbjct: 109 PFSRRRDEATRNTCKGLDVKFTQVHDCLLNEQGTVLTQQGRPYVVFSQFFRAGSKRNISI 168
Query: 125 FQTVPKPEQFHKYPEMDFGDPLIRWL----------GGETEALIKLNERLSQEIESFKSG 174
+ + + + P ++ + L GG T+AL L +++ F++
Sbjct: 169 PSMLAEGKFYTGEPGIEETPASEKLLPLKNEKLFSRGGRTQALQVL-----EDLSRFEN- 222
Query: 175 VYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y + P L G T SA K G +S+R FY H N + E P + QL W
Sbjct: 223 -YAAEHDYPSLQGT-TGLSAHNKLGTISIREFY---HYVRNELGEDHP-----LIRQLYW 272
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
R++F ++ H P NI W + +AW +G TG+P +DA MRQL
Sbjct: 273 RDFFTHIAHHFPSVFGQSFKEKFRNIQW-----GYNNSFFHAWCSGSTGFPIVDAGMRQL 327
Query: 295 R----------------------------------RLLDCTYCVCPVNF----------- 309
+L+D CV N+
Sbjct: 328 NATGFMHNRVRMIVASFLVKDLHIDWYLGERYFASKLVDYDPCVNNGNWQWSASTGADSQ 387
Query: 310 -----------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
R+ DPD YI+++VPELR+ I+ G+ E++ +S YP
Sbjct: 388 PYFRIFNPWLQQRKYDPDCEYIRKWVPELREMDAAGIH-------GL-ERSKPPVSTGYP 439
Query: 359 ERIVNH 364
IV+H
Sbjct: 440 SAIVDH 445
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 68/254 (26%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
PDL G + S L FG +SVR + + E P QL WR++ Y +
Sbjct: 231 PDLPGV-SRLSPYLHFGEISVRMVWDEIVKKLG-FQEAEP-----YLRQLGWRDFAYHLL 283
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA---------VMRQ 293
H P + + P+ + P +K L W+ G TGYPF+DA M
Sbjct: 284 YHFP---KTPEEPLRQEFAYFPWK--ENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHN 338
Query: 294 LRRLLDCTYCV-----------------------------------------------CP 306
R++ ++ V P
Sbjct: 339 RARMVVGSFLVKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNP 398
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+ G + DP+G Y++++VPE+ P ++I++PW+APL V EKA + + YP IVNH +
Sbjct: 399 ITQGEKFDPEGSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDE 458
Query: 367 ASLENKQYLKKEKA 380
A L + ++ KA
Sbjct: 459 ARLAALEAFEEIKA 472
>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
Length = 518
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 93/447 (20%), Positives = 156/447 (34%), Gaps = 120/447 (26%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--------C 63
R F+ + +L L+ GG L +V P ++ R+LN + D
Sbjct: 70 RVEFIRASIEELRGALREAGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEPSAQARD 129
Query: 64 EGVKPY-------------------------QSFPTGSHPPRYQPCKTLLNFRDLSGLPP 98
E V+ Q P G P L DL P
Sbjct: 130 EAVRKALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPT 189
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEAL 157
P FG ++ + +L Q P E + + + L + G L
Sbjct: 190 EP---------YFGALARPPE---ALAQPTPALEAM-GFARTNLSEIALPSGMSGGQTLL 236
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+ ER+ Y + + P + GP + S L+FG +S+R A H +
Sbjct: 237 DEFEERMDD---------YHARRDFPAVRGP-SYLSTHLRFGTVSIRTL--AARAHAAML 284
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
R + + +L+WR++++ + H P D +P I W+ + A
Sbjct: 285 RGSRGAATW--LSELVWRDFYFMILHHRPDLADGAAFHPEFDRIRWVDGD--TGDARFEA 340
Query: 277 WKNGQTGYPFIDAV---------MRQLRRLLDCTYCV----------------------- 304
WK +TGYP +DA M R++ ++ +
Sbjct: 341 WKAARTGYPLVDAAMLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDF 400
Query: 305 --------------C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
C PV + DP G +I++Y+P+L + P +YI+ PW
Sbjct: 401 AANNGGWQWAASSGCDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAPWT 460
Query: 341 APLGVQEKANCIISKDYPERIVNHVQA 367
AP V ++A+ ++ + YP IV+H A
Sbjct: 461 APANVLKEASVVLGETYPLPIVDHAAA 487
>gi|374619940|ref|ZP_09692474.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303167|gb|EHQ57351.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 481
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 94/244 (38%), Gaps = 71/244 (29%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
LKFG +S R+ WA + ++ WRE+ Y + +D M P
Sbjct: 245 LKFGEISPRQV-WASAQQRKLSAPEWTSAIDKFLAEIGWREFCYQLI---DLFDAMPDRP 300
Query: 256 I---CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------ 294
PW N E++L AW+ G TGYP +DA MR+L
Sbjct: 301 FKDQFAGFPW-----DNSEEHLKAWQRGMTGYPIVDAGMRELWQTGFMHNRVRMIVASFL 355
Query: 295 ------------RRLLDC------TYCVC--------------------PVNFGRRLDPD 316
R DC C P+ G++ DP+
Sbjct: 356 TKHLLVHWLEGERWFWDCLLDADIASNACSWQWVAGSGADAAPYFRIFNPIAQGQKFDPE 415
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV---QASLENKQ 373
G Y+KR+ PEL P ++++ PW+AP A + K YPE IV+H Q +L+ +
Sbjct: 416 GEYVKRWCPELADMPKKFVHAPWEAPAMTLASAGVELGKTYPEPIVDHKTARQGALDAYE 475
Query: 374 YLKK 377
+KK
Sbjct: 476 VIKK 479
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 74/300 (24%)
Query: 138 PEMDFGDPLIR-WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
P + + D + + W GE A L++ + +K G + P G + S L
Sbjct: 189 PTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDI-----PSAKGT-SRLSPHL 242
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI 256
FG +S + ++A+ D F T + ++ + +L WRE+ Y + H P N
Sbjct: 243 HFGEVSPNQVWYAIKDRFGTSEDKSIETYLS---ELGWREFSYYLLFHFPTLPNKNFNDK 299
Query: 257 CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------- 296
PW ++ K L AW+ G TG P +DA MR+L +
Sbjct: 300 FDKFPWRTDA-----KALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNL 354
Query: 297 --------------LLDCTYCVCPVNF----------------------GRRLDPDGIYI 320
LLD ++ G + D G Y+
Sbjct: 355 LLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGGYV 414
Query: 321 KRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN---HVQASLENKQYLKK 377
++Y PEL +YI++PW+AP + ++A + KDYP+ IV+ Q +L+ Q LK+
Sbjct: 415 RQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQTLKE 474
>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum CFBP2957]
Length = 522
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 64/246 (26%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R A H +H R + + +LIWR
Sbjct: 253 YHARRDYPAVRGP-SYLSTHLRFGTVSIRTL--AARAHSAMLHGSRGAATW--LSELIWR 307
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
++++ + H P + P I W+ + AW++ +TGYP +DA M Q+
Sbjct: 308 DFYFMILHHRPDLAEGTSFRPEFDRIRWV--GGETGDVRFAAWRDARTGYPLVDAAMLQI 365
Query: 295 R---------RLLDCTYCV-------------------------------------C--- 305
R R++ ++ + C
Sbjct: 366 RQSGYMHNRLRMVTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQ 425
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +Y++ PW AP V + A + YP
Sbjct: 426 PWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYP 485
Query: 359 ERIVNH 364
IV H
Sbjct: 486 RPIVEH 491
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 119/300 (39%), Gaps = 74/300 (24%)
Query: 138 PEMDFGDPLIR-WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
P + + D + + W GE A L++ + +K G + P G + S L
Sbjct: 189 PTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDI-----PSAKGT-SRLSPHL 242
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI 256
FG +S + ++A+ D F T + ++ + +L WRE+ Y + H P N
Sbjct: 243 HFGEVSPNQVWYAIKDRFGTSEDKSIETYLS---ELGWREFSYYLLFHFPTLPNKNFNDK 299
Query: 257 CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------- 296
PW ++ K L AW+ G TG P +DA MR+L +
Sbjct: 300 FDKFPWRTDA-----KALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNL 354
Query: 297 --------------LLDCTYCVCPVNF----------------------GRRLDPDGIYI 320
LLD ++ G + D G Y+
Sbjct: 355 LLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGGYV 414
Query: 321 KRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN---HVQASLENKQYLKK 377
++Y PEL +YI++PW+AP + ++A + KDYP+ IV+ Q +L+ Q LK+
Sbjct: 415 RQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQTLKE 474
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 71/288 (24%)
Query: 145 PLIRWLGGETEALIKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQSAALKFGCL 201
P I+W G E + ++ +GV YL + PD G + S L FG +
Sbjct: 191 PKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHDGT-SLLSPYLHFGEI 249
Query: 202 SVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP 261
S R + A+ + N+ +G Q+ WRE+ + + H P Q +
Sbjct: 250 SPRMIWQAVKE--NSTSKGAE----GYLRQIGWREFAHHLLYHFPETPQKPLRSQFNSFS 303
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------- 304
W N ++ L AW+ GQTGYP IDA MRQL RL+ ++ V
Sbjct: 304 W-----KNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSFLVKDLMIHWI 358
Query: 305 ---------------------------C------------PVNFGRRLDPDGIYIKRYVP 325
C P+ G + DP+G Y+K++VP
Sbjct: 359 EGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDPEGNYVKKWVP 418
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
EL P +++++PW+AP + ++ + +YP+ IVNH +A E Q
Sbjct: 419 ELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQ 466
>gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii]
Length = 1008
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 120/306 (39%), Gaps = 78/306 (25%)
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQ 180
EV F T PEQ ++ F +W G A+ +L L++ + F+ + +
Sbjct: 191 EVDWFFT---PEQEASSDQLKF-----KWKPGVGGAISELEHFLAERLTEFE---HDRAK 239
Query: 181 VSPDLTGPPTSQSAALKFGCLSVRRFYWALHD---HFNTIHEGRPPSHFNITGQLIWREY 237
V D T + S + G +SVR ++ + + R S + Q+ +REY
Sbjct: 240 VDRDST---SRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREY 296
Query: 238 FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL--- 294
++ H P+ + PW + H K AW+ GQTGYP +DA MRQL
Sbjct: 297 SRYLAFHFPFIHERSLLGHLRACPWRIDQHAFK-----AWRQGQTGYPIVDAAMRQLWSS 351
Query: 295 ------RRLLDCTYCV----CPVNFG---------------------------------- 310
R++ ++ V P +G
Sbjct: 352 GWCHNRGRVVAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFS 411
Query: 311 ---------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
RR DPDG Y++R++P L + P +YI+ PWKAP V A+ + +YP I
Sbjct: 412 YMMDLEKEARRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPI 471
Query: 362 VNHVQA 367
+ A
Sbjct: 472 ITRSDA 477
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 68/250 (27%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI 233
Y ++ P + G + S L FG +S+R+ + A + ++ + +L
Sbjct: 219 AAYEKDRDIPSIKGT-SRLSPFLSFGQISIRKVWAACQEMPSSTGKA------TFLKELA 271
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WR++++ + +P E N+ W + E+ LN W+ GQTGYP IDA MRQ
Sbjct: 272 WRDFYHMIYFTHPEQKNYELIEKYRNMDWQKD-----EEALNKWQAGQTGYPIIDAAMRQ 326
Query: 294 L----------------------------------RRLLDCTYC---------------- 303
L R+L+D
Sbjct: 327 LNQTGWMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDA 386
Query: 304 ------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
P+ G++ D DG +IK++VPEL Q P+++++EP+ Q ++ DY
Sbjct: 387 VPYFRIFNPITQGKKFDKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDY 446
Query: 358 PERIVNHVQA 367
P IV+H +A
Sbjct: 447 PLPIVDHNEA 456
>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|404394317|ref|ZP_10986121.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Ralstonia sp.
5_7_47FAA]
gi|348613327|gb|EGY62917.1| hypothetical protein HMPREF0989_03412 [Ralstonia sp. 5_2_56FAA]
Length = 518
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/433 (20%), Positives = 162/433 (37%), Gaps = 92/433 (21%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+ + +L L+ GG L +V P ++ R+LN + D E +
Sbjct: 70 RVEFIRASIEELRGALRETGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEPSAQARD 129
Query: 72 FPTGSHPPRYQPCKTLLNFRD---------LSGLPPRPKEDIDFRHVTFGTMSESLQREV 122
+ QPC +F+D L+G +++ ++ R
Sbjct: 130 EAVRKALAQ-QPC-AWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAY 187
Query: 123 SL---FQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL--------NERLSQEIESF 171
F + KP + +P P + +G L ++ + L E E
Sbjct: 188 PTEPYFGALAKPPEALAHPT-----PALEAMGFARTNLSEIALPSGMSGGQTLLDEFEE- 241
Query: 172 KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ 231
+ Y + + P + GP + S L+FG +S+R A H + + R + + +
Sbjct: 242 RMDDYHARRDFPAVRGP-SYLSTHLRFGTVSIRTL--AARAHASMLRGSRGAATW--LSE 296
Query: 232 LIWREYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
L+WR++++ + H P D +P I W+ + AWK +TGYP +DA
Sbjct: 297 LVWRDFYFMILHHRPDLADGAAFHPEFDRIRWVDGD--TGDARFEAWKAARTGYPLVDAA 354
Query: 291 ---------MRQLRRLLDCTYCV------------------------------------- 304
M R++ ++ +
Sbjct: 355 MLQIFQSGYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSG 414
Query: 305 C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
C PV + DP G +I++Y+P+L + P +YI+ PW AP V ++A+ ++
Sbjct: 415 CDAQPWFRIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLG 474
Query: 355 KDYPERIVNHVQA 367
+ YP IV+H A
Sbjct: 475 ETYPLPIVDHAAA 487
>gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 1008
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 120/306 (39%), Gaps = 78/306 (25%)
Query: 121 EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQ 180
EV F T PEQ ++ F +W G A+ +L L++ + F+ + +
Sbjct: 191 EVDWFFT---PEQEASSDQLKF-----KWKPGVGGAISELEHFLAERLTEFE---HDRAK 239
Query: 181 VSPDLTGPPTSQSAALKFGCLSVRRFYWALHD---HFNTIHEGRPPSHFNITGQLIWREY 237
V D T + S + G +SVR ++ + + R S + Q+ +REY
Sbjct: 240 VDRDST---SRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREY 296
Query: 238 FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL--- 294
++ H P+ + PW + H K AW+ GQTGYP +DA MRQL
Sbjct: 297 SRYLAFHFPFIHERSLLRHLRACPWRIDQHAFK-----AWRQGQTGYPIVDAAMRQLWSS 351
Query: 295 ------RRLLDCTYCV----CPVNFG---------------------------------- 310
R++ ++ V P +G
Sbjct: 352 GWCHNRGRVVAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFS 411
Query: 311 ---------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
RR DPDG Y++R++P L + P +YI+ PWKAP V A+ + +YP I
Sbjct: 412 YMMDLEKEARRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPI 471
Query: 362 VNHVQA 367
+ A
Sbjct: 472 ITRSDA 477
>gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
Length = 466
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 65/228 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S LK G +S+R + A+++ EGR +L WR++++ + AH P + E
Sbjct: 231 SRFLKTGTISIRTIFHAIYEEALYEDEGRE----TFIKELAWRDFYHMIYAHYPEMKEKE 286
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
N + W + E AW G+TG+P +DA MRQL R++ ++
Sbjct: 287 INSAFQGMRW-----NDDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFL 341
Query: 304 V---------CPVNFGRRL--------------------------------------DPD 316
F ++L DP
Sbjct: 342 TKDYLIDWRKGEAYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPITQSKRFDPS 401
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
G +I++YVPEL ++I+EP K P+ Q K+ C++ YP V+H
Sbjct: 402 GEFIRKYVPELEHIDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPTVDH 449
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/460 (23%), Positives = 170/460 (36%), Gaps = 109/460 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ-- 61
GT +G + +L LA L R L+ G +L + G + +L E + + +
Sbjct: 45 GTGPLGAAQAWWLHHSLAALARSLEEIGSRLTLRSGPAGQVLDQLIDETGAASVYWNRRY 104
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGL----PPRPKEDIDFRHVTFGTMSES 117
D G+ ++ + + + L R +G P R + ++
Sbjct: 105 DPPGIAIDKAI-------KARLTEDGLVIRTFAGQILHEPTRLTTGSGTNFRVYTPFWKA 157
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL-----------------GGETEALIKL 160
L+ + P P + P +PL W GE AL
Sbjct: 158 LESSGEPREPAPAPASLNAPPSWPDSEPLDSWALLPTKPNWAAEFSEIWQPGEAGAL--- 214
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHE 219
ERL IE+ +G Y S + P P TS S L G +S R + H
Sbjct: 215 -ERLDTFIENGLAG-YRSLRDFP--ARPNTSMLSPHLAMGEISPARIW-----HATRGLA 265
Query: 220 GRPPSH--FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
GR S + +++WR++ Y + H P N PW S P+ L W
Sbjct: 266 GRFASEDIIHFRKEVVWRDFSYHLLFHFPDLKSKNWNSKFDAFPW--RSAPD---LLKKW 320
Query: 278 KNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------ 304
+ G+TGYP +DA MRQL R++ ++ +
Sbjct: 321 QRGETGYPIVDAGMRQLWRHGYMHNRVRMIAASFLIKDLMIDWREGERWFRDTLVDADPA 380
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P+ G + D +G YI+ +VPEL+ P YI+ P++A
Sbjct: 381 SNAASWQWVAGSGADASPFFRIFNPITQGEKFDVEGHYIRTFVPELKAMPDAYIHRPFEA 440
Query: 342 PLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKE 378
PL V ++A I+ + Y + IV+H QA +L Q LK E
Sbjct: 441 PLTVLKEAGVILDETYAKPIVDHKQARDEALAALQGLKGE 480
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/447 (23%), Positives = 172/447 (38%), Gaps = 112/447 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P +G +L + LA L S G L + QG P++I + L + + T + + +
Sbjct: 46 PDLAKLGEASQWWLHQSLASLS---ASTGQHLQLFQGDPLAIIESLINQYDATHVIWNR- 101
Query: 63 CEGVKPYQSFPTGSHPPRYQPCKTLLN--------------------------FRD--LS 94
G +P+Q + C +L+ +R L+
Sbjct: 102 --GYEPWQITRDSHIKATLKDCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLT 159
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLI-RWLGGE 153
PR E I H+ + T S ++F+ + ++ P + + D + +W GE
Sbjct: 160 RSAPRYPESIP-EHLPWATRINS----TNIFEPLTL-DELKLMPSIQWYDTIAAQWQPGE 213
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
A +RL+ IE +G Y ++ P + G + S L FG +SV ++A+ D
Sbjct: 214 QGA----KDRLATYIEE-AAGRYREDRNLPAVKGT-SLLSPHLHFGEISVNTVWYAIKDA 267
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI-PWLPESHPNKEK 272
F E + +L WRE+ + + H P+ Q E N+ PW S P +
Sbjct: 268 FKDDPENEHADTY--LSELGWREFSHYLLFHFPHI-QTENFSSKFNVFPW--RSSPEE-- 320
Query: 273 YLNAWKNGQTGYPFIDAVMRQL------------------------------RRLLDCTY 302
L AW+ G TG P +DA MR+L R DC
Sbjct: 321 -LKAWQFGNTGIPIVDAGMRELYQTGYMHNRVRMIVGSFLVKNLLIDWREGERWFWDCLL 379
Query: 303 --------------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
P+ G + D G Y+K Y PELR P ++I+
Sbjct: 380 DADMAANSASWQWVAGSGADASPYFRIFNPILQGEKFDKQGDYVKHYCPELRLLPPKFIH 439
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVN 363
+PW+AP + + N ++ +YP+ IV+
Sbjct: 440 KPWEAPSNILQACNIVLGHNYPKPIVD 466
>gi|421900163|ref|ZP_16330526.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum MolK2]
Length = 522
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 64/249 (25%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R H H +H R + + +LIWR
Sbjct: 253 YHARRDYPAVRGP-SYLSTHLRFGTVSIRTLA--AHAHAAMLHGSRGAATW--LSELIWR 307
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
++++ + H P D P I W+ E ++ AW++ +TGYP +DA M Q+
Sbjct: 308 DFYFMILHHRPDLADGASFRPEFDRIRWV-EGDAGDVRF-AAWRDARTGYPLVDAAMLQI 365
Query: 295 R---------RLLDCTYCV-------------------------------------C--- 305
R R++ ++ + C
Sbjct: 366 RQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQ 425
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +Y++ PW AP V + A + + YP
Sbjct: 426 PWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYP 485
Query: 359 ERIVNHVQA 367
+ IV H A
Sbjct: 486 QPIVEHAAA 494
>gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
Length = 494
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 70/272 (25%)
Query: 165 SQEIESFKSG---VYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD-HFNTIHEG 220
++ +++F +G Y N+ D G + S L +G LS+R+ + A+ I +G
Sbjct: 219 NKALDAFLAGPLADYGDNRGKVD-GGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDG 277
Query: 221 RPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
R P+ + + L +REY + H P+ + + PW + E + AW
Sbjct: 278 RQPAERSASLFLRALGYREYSRYLCFHFPFTHERSLLGHLRHFPWRVD-----EGFFKAW 332
Query: 278 KNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------ 304
+ G+TGYP +DA MR+L R++ ++CV
Sbjct: 333 RQGRTGYPLVDAGMRELWATGWLHNRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLE 392
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P GRR DPDG Y+++++PEL + P ++I+EPW A
Sbjct: 393 SDILGWQYISGSLPDGHELDRMEIPHVEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNA 452
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
P V A + +YP +V + A+ E Q
Sbjct: 453 PPSVLCAAGIELGCNYPRPVVE-IAAARERLQ 483
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 98/253 (38%), Gaps = 72/253 (28%)
Query: 185 LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAH 244
L G ++ S L GCLS R + G + + QL WR+++ + H
Sbjct: 234 LAGGTSALSPYLHHGCLSAREC------EQRAVRRGGEGAEAFVR-QLAWRDFYAHVLLH 286
Query: 245 NPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ----------- 293
+P + E + W ++ L AW++G+TG+P +DA MRQ
Sbjct: 287 HPEDVRREHQERMRALRW-----ERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRA 341
Query: 294 -----------------------LRRLLD-------------CTYCVCPVNFGRRL---- 313
+R LLD + V P RR+
Sbjct: 342 RLVTGSFLTKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPA 401
Query: 314 ------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
DPDG Y++R+VPEL + P + EPW Q A C I DYP IV+H
Sbjct: 402 LQQRRHDPDGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIVDHAH- 460
Query: 368 SLENKQYLKKEKA 380
E ++ L++ +A
Sbjct: 461 --ERRRALERYRA 471
>gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
Length = 494
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 114/272 (41%), Gaps = 70/272 (25%)
Query: 165 SQEIESFKSG---VYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD-HFNTIHEG 220
++ +++F +G Y N+ D G + S L +G LS+R+ + A+ I +G
Sbjct: 219 NKSLDAFLAGPLADYGDNRGKVD-GGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDG 277
Query: 221 RPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
R P+ + + L +REY + H P+ + + PW + E + AW
Sbjct: 278 RQPAERSASLFLRALGYREYSRYLCFHFPFTHERSLLGHLRHFPWRVD-----EGFFKAW 332
Query: 278 KNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------ 304
+ G+TGYP +DA MR+L R++ ++CV
Sbjct: 333 RQGRTGYPLVDAGMRELWATGWLHNRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLE 392
Query: 305 -----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P GRR DPDG Y+++++PEL + P ++I+EPW A
Sbjct: 393 SDILGWQYISGSLPDGHELDRMEIPHIEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNA 452
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
P V A + +YP +V + A+ E Q
Sbjct: 453 PPSVLCAAGIELGCNYPRPVVE-IAAARERLQ 483
>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 482
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/430 (21%), Positives = 158/430 (36%), Gaps = 79/430 (18%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE-G 65
H R F+ E L +LD L++ GG L + G L R L + +D E G
Sbjct: 46 HEADRRVEFIRESLVELDAALRTRGGALLVRHGWATREIPDLARGLGVAAVFVNRDYEPG 105
Query: 66 VKPYQSFPTGSHPP---RYQPCK--TLLNFRDLSGLPPRPKEDID-FRHVTFGTMSES-- 117
K + + + ++ K +L+ ++ RP +R+ +++
Sbjct: 106 AKQRDAAVSAALKADGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDW 165
Query: 118 --LQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESF--KS 173
Q + P + ++ F +R LG ++ Q + F +
Sbjct: 166 YPHQAGSGVLAATPAADGVPPLAKIGFSGTDLRRLG-----IVPGMRGGRQLLADFLGRI 220
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI 233
G Y + P + G + S L+FG +SVR A EG + ++ +L+
Sbjct: 221 GRYRQQRDFPAVKGV-SYLSVHLRFGTVSVRDLV-AKAIAAGAFREGGEGAATWLS-ELV 277
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WR++++ + P+ + P I W ++ E +AW G+TGYP +DA MRQ
Sbjct: 278 WRDFYFMILDRFPHVVERAFKPAYDLINW--QAGAQAEDAFSAWCAGRTGYPLVDAAMRQ 335
Query: 294 LR---------RLLDCTYCVCPVNFGRRL------------------------------- 313
L R+L ++ + RL
Sbjct: 336 LNSSGYMHNRLRMLVASFLTKDLGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDA 395
Query: 314 ----------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
DP G +I+RY+PEL P ++I+ PW+ Q +I +
Sbjct: 396 QPYFRIFNPVTQSERFDPAGKFIRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTT 455
Query: 358 PERIVNHVQA 367
P +V+H QA
Sbjct: 456 PAPLVDHDQA 465
>gi|453062216|gb|EMF03207.1| deoxyribodipyrimidine photolyase [Serratia marcescens VGH107]
Length = 476
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 114/306 (37%), Gaps = 89/306 (29%)
Query: 137 YPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
YP D GD + GE AL +L ++++ YL + P + G +S S L
Sbjct: 193 YPAADIGDD---YPAGEEAALQRLRAFCREQVQD-----YLRQRDLPAIAGT-SSLSPYL 243
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHNPYYD 249
G LS R+ + L + E R F +LIWRE++ + H P+
Sbjct: 244 AIGMLSPRQCFNRLRAECPQLLEDRESGAFAWLNELIWREFYRHLLVAYPELCRHRPFIA 303
Query: 250 QMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDC 300
+K C + L AW+ G+TGYP +DA MRQL R++
Sbjct: 304 WTDKVRWC-----------DDAAKLQAWQRGETGYPIVDAAMRQLNATGWMHNRLRMISA 352
Query: 301 TYCV-----------------------------------------------CPVNFGRRL 313
++ V P G R
Sbjct: 353 SFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 412
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
DP G +I++++PEL P I+ P + EK C++ +YP IV+H QA LE
Sbjct: 413 DPQGTFIRKWLPELADVPDNDIHHPHR----WAEKQPCVL--NYPLPIVDHKQARLETLA 466
Query: 374 YLKKEK 379
+ K
Sbjct: 467 AFEAAK 472
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 66/256 (25%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
P + GP + SA L+FG +S+R AL + +H P +LIWR++++ +
Sbjct: 243 PAIKGP-SYLSAHLRFGTVSIR----ALASIAHELHAQGNPGASTWLSELIWRDFYHQIL 297
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
++ P+ Q P + + E + AW G+TGYP +DA M Q+
Sbjct: 298 SNFPHVAQSAFKPAYDAVRY--EHGKAADALFKAWCEGRTGYPLVDAAMAQINQTGYMHN 355
Query: 296 --RLLDCTYCV-------------------------------------C----------P 306
R++ ++ V C P
Sbjct: 356 RLRMVVASFLVKDLGIHWQWGERYFAEHLIDYDLAANNGGWQWASSSGCDAQPWFRIFNP 415
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V R DP G +I+RY+P+L + P I+ PWKA A I YP +VNHV
Sbjct: 416 VTQSERFDPQGRFIRRYLPQLAELPDHAIHAPWKATPVELAAAGVEIGVHYPAPLVNHVV 475
Query: 367 A---SLENKQYLKKEK 379
A +L +K++K
Sbjct: 476 ARDKTLARYAVVKEQK 491
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/444 (24%), Positives = 163/444 (36%), Gaps = 107/444 (24%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G H+G +L + L L LK+ G L I +G + +L RE + + + D
Sbjct: 44 GLRHLGAATRWWLAQSLRALQADLKTLGADLIIRRGRAAQVLVELARETRASAV-YWNDV 102
Query: 64 EGVKPYQ---SFPTG----SHPPRYQPCKTLLNFRDLSGLPPR-PKEDIDF--RHVTFGT 113
P + S G R P L++ +SG R P+ F R + G
Sbjct: 103 AQAGPRRVASSVEAGLGEIGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGD 162
Query: 114 MSESLQREVSLFQTVPKPEQFHKYP--------EMDFGDPLIRWLGGETEALIKLNERLS 165
+ L P P + P E+ W GG A + ER +
Sbjct: 163 PPKPL----------PTPGRLAAVPNVVSLTVDELMLEPTRPDWAGG-LRATWQAGERAA 211
Query: 166 QE-IESF---KSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEG 220
Q+ + SF G Y ++ PD+ TS+ S L+FG +S R+ ++A E
Sbjct: 212 QQRLGSFLESAVGSYAGDRDRPDIDA--TSRLSPHLRFGEISPRQIWYAAR----FAAEE 265
Query: 221 RPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
RP I ++ WRE+ + +NP P PW + L AW
Sbjct: 266 RPALAKGIDKFLSEIGWREFSRHLLYNNPDLATRNLQPSFDAFPWT-----QDDAALAAW 320
Query: 278 KNGQTGYPFIDAVMRQL----------------------------------RRLLDCTYC 303
+ G+TGYP +DA MR+L L+D
Sbjct: 321 QRGRTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLLDWRQGEQWFWDTLVDADAG 380
Query: 304 VCPVNF----------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
P ++ G + D +G Y++R+VPEL + P I++PW A
Sbjct: 381 SNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRRWVPELARLPAGLIHQPWAA 440
Query: 342 -PLGVQEKANCIISKDYPERIVNH 364
PL + E A + + YP IV H
Sbjct: 441 KPLELAE-AGVTLGRSYPAPIVEH 463
>gi|448546468|ref|ZP_21626632.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548505|ref|ZP_21627724.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557855|ref|ZP_21632841.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702921|gb|ELZ54861.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445713992|gb|ELZ65763.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714263|gb|ELZ66028.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 484
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 158/449 (35%), Gaps = 109/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE---------LNFTKL 57
H G R R+LL+ L++L + G L + +G P ++ + ++++ L
Sbjct: 40 HAGAPRVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGL 99
Query: 58 CFEQDCE--------GVKPYQSFPTGSHPPRYQPCKTLLNF------------RDLSGLP 97
E+D + GV HPP + RD
Sbjct: 100 ARERDADVRLALDEAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPY 159
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P P D T T +ESL + F ++ F +P TEA
Sbjct: 160 PEPDADDLADAATLETAAESLSDADAEFDIAVG--GLPTISDLGFEEPSASVRSAGTEAA 217
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F + Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 218 ---RERLS----AFCADAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 268
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W + ++
Sbjct: 269 REGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTENYKEYENDIAWR-----DDDEE 323
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 324 LAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 383
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YIKRYVPEL I+E
Sbjct: 384 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE 443
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 444 -WHELSDLERER---LAPDYPEPIVDHAE 468
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 162/441 (36%), Gaps = 109/441 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF-EQDCEGV 66
IG +L + L L L + G L + +G P + L +E+ + + + E D G
Sbjct: 53 IGSASRWWLAQSLRSLQGSLTARGQSLTLRRGRPARVIADLAQEIRASAVHWNESDIPGE 112
Query: 67 KPYQSFPTGSH-----PPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
+ T + R P L+ L R KE R + +R
Sbjct: 113 AATEREVTTALDRIGVASRSFPSDLLVRPEKL-----RNKEGRGLR-----VFTPFWKRV 162
Query: 122 VSLF---QTVPKPEQFHKYPEM---------------DFGDPLIR-WLGGETEALIKLNE 162
+SL Q +P P+ P++ D+ L W GE A +L +
Sbjct: 163 LSLGDPPQPLPAPKALTAGPKIATDDLASWNLEPTRPDWASGLRETWTPGEAAAQKRLKD 222
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
L +I S+ S L ++ D T + S L+FG +S R+ + + G+P
Sbjct: 223 FLDNDIASYAS---LRDRPDRDAT---SRLSPHLRFGEISPRQVW----HSASFAAAGKP 272
Query: 223 PSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
++ +L WRE+ + +P + PW S P K L AW+
Sbjct: 273 AISSSVAKFLSELGWREFSRHLLFDHPQLAERNLQSSFDAFPW--HSDP---KALRAWQR 327
Query: 280 GQTGYPFIDA---------VMRQLRRLLDCTYCV-------------------------- 304
GQTGYP +DA +M R++ ++ V
Sbjct: 328 GQTGYPIVDAGMRELWHTGIMHNRVRMVVASFLVKHLLIDWRDGEKWFWDTLVDADPGSN 387
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G + DPDG Y+ ++VPEL + P + I++PW+A
Sbjct: 388 PASWQWVAGSGADAAPYFRVFNPILQGEKFDPDGAYVSKWVPELARLPAKLIHQPWEATP 447
Query: 344 GVQEKANCIISKDYPERIVNH 364
A + K YPE IV+H
Sbjct: 448 MELAAAGVTLGKTYPEPIVDH 468
>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
Length = 505
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/491 (20%), Positives = 169/491 (34%), Gaps = 154/491 (31%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R+ +L E L+ LD L +HGG L +++G+ + + + +
Sbjct: 52 GRAMGGAQRW-WLHESLSKLDDALAAHGGSLILLRGNEHEAITGFAAAIGAAMVVWNR-- 108
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
RY +T G K D+ R + T + L RE
Sbjct: 109 ----------------RYAKAQT--------GTDASIKRDLIDRGIAVSTFNGHLLREPW 144
Query: 124 LFQT--------------------------VPKPEQFHKYP-------------EMDFGD 144
T +P P +P E++
Sbjct: 145 TVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPAHATPHVCTLRELELQP 204
Query: 145 PLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS--PDLTGPPTSQSAA-----LK 197
W GG E + S ++E+F L N +S P L P +++ + L+
Sbjct: 205 SAPDWAGGLRETWQCGEQAASDQLEAF-----LENSLSDYPTLRDFPAARATSRLSPYLR 259
Query: 198 FGCLSVRRFYWALHDHFNTIHEGR----------PPSHFNITGQLIWREYFYTMSAHNPY 247
FG +SVR+ ++A + + R P S F ++ WRE+ Y + H
Sbjct: 260 FGNISVRQVWYATLSAADAMRSARIVRGVDSKDGPLSKF--LSEIGWREFSYHLLYHFAP 317
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------- 294
Q+ ++PW ++ K L W+ G+TGYP +DA MR+L
Sbjct: 318 LHQVNFRRQFDSMPWRDDA-----KSLRKWQTGRTGYPLVDAGMRELWHTGWMHNRVRMV 372
Query: 295 ---------------------RRLLDCTYCVCPVNF----------------------GR 311
L+D P ++ +
Sbjct: 373 AASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQAQ 432
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---S 368
+ DP G Y +R+VPEL Q ++ PW A ++A+ + + YP IV+H A +
Sbjct: 433 KFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQCARARA 492
Query: 369 LENKQYLKKEK 379
LE+ + L E
Sbjct: 493 LESVKRLDSES 503
>gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 537
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 107/280 (38%), Gaps = 74/280 (26%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ----SAALKFGCLSVRRFY 207
GE EA L+ L + +++ + GP ++ S L +G +S+RR
Sbjct: 236 GEAEAHRTLDSFLRERGRNYRRAM--------SRPGPAQTECSRISVHLAYGTISLRRVV 287
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP--- 264
+ L + P L + + H+ + ++E P N ++P
Sbjct: 288 YELRRRQEELRGANGPDAAARRKAL--SSFDSRLHWHSHFTQKLEDAPRIENESYIPAFD 345
Query: 265 --ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--C------ 305
+ +AW +G+TG+P +DA MR LR R + C++ C
Sbjct: 346 ALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAMLCSFAAYDCWLDWRR 405
Query: 306 -------------------------------------PVNFGRRLDPDGIYIKRYVPELR 328
PV G+ DPDG +I+R+VPEL
Sbjct: 406 FAPTYGGLMADYVPGIHYPQVQMQSGTTGINRVRIYNPVKQGKEQDPDGTFIRRWVPELS 465
Query: 329 QF-PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
Y++ PWK Q+ A C+I KDYPER+V+H A
Sbjct: 466 HLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDA 505
>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
Length = 475
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 119/305 (39%), Gaps = 81/305 (26%)
Query: 121 EVSLFQTVP----KPEQFHKYPEMDFGDPLIR-WLGGETEALIKLNERLSQEIESFKSGV 175
E++L P K P + D ++ W GE A + + +E+ + G
Sbjct: 171 EIALAAVTPYSALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGEGR 230
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
L Q P S+ S A+ +G +SV + + HD HE QL W
Sbjct: 231 DLPAQ-------PHVSRLSPAIHWGEISVHQLW---HDAQAIGHE----DALAFQRQLAW 276
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
RE+ T H+P D++ + PW H + EK LN W+ G TG PF+DA MR+L
Sbjct: 277 REFSVTQLFHHPDMDRINLDRRFNLFPW----HDDAEK-LNRWQQGLTGIPFVDAGMREL 331
Query: 295 RR----------------------------------LLD---------------CTYCVC 305
+ LLD C
Sbjct: 332 WQTGTMHNRVRMVVGSFLVKNLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAA 391
Query: 306 P-------VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
P V G++ DP G Y + +VPEL + P +Y++ PW+AP G+ ++ + YP
Sbjct: 392 PYFRIFNPVTQGQKFDPHGDYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYP 451
Query: 359 ERIVN 363
E +V+
Sbjct: 452 EPMVD 456
>gi|452207429|ref|YP_007487551.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452083529|emb|CCQ36840.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 526
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 147/424 (34%), Gaps = 99/424 (23%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R RF+ E +ADL Q G L + G PI++ + + D +
Sbjct: 71 RIRFVHESVADLAAQYADRSGGLTLAYGDPIAVLRSFR------------DAGWDIATTA 118
Query: 72 FPTGSHPPRYQPCKTL---LNFRDLSGL---PPRPKEDIDFRHVTFGTMSESLQREVSL- 124
PTG + R + F D GL R +E+ + T + E ++
Sbjct: 119 DPTGRYGLRRDNAAAEACNVTFLDADGLVRGTERSRENWSDHVEAWLTDEQVTWDETAVE 178
Query: 125 FQTVPKPEQFHKYPEMDFGDP--LIRWLGGETEALIKLNERLSQEIESFKS--GVYLSNQ 180
+ P DP I GG A +ESF Y
Sbjct: 179 LDHIETPVSVEAIEARHSVDPEKTIERRGGTAAAWAA--------VESFADRLAAYPGRI 230
Query: 181 VSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY 239
+P TSQ S L+FGC+SVR+ Y + + +GR F +L W +++
Sbjct: 231 SAPSDARTGTSQLSPYLRFGCVSVRQVYQFIDED---CRDGRAKQMF--VSRLYWNKHYN 285
Query: 240 TMSAHNPYYDQMEKNPICLNIPWLPESHPNKE--KYLNAWKNGQTGYPFIDAVMRQL--- 294
A P + + NP+ L E H + AWK G+TGYP +DA MR L
Sbjct: 286 QKLADWPGWMETAVNPV------LEEFHAETHDPALVAAWKRGETGYPMVDASMRCLEET 339
Query: 295 -----RRLLDCTYCVCPV-------------------------------------NFGRR 312
R C +C + N R
Sbjct: 340 GWLNFRMRAMCASFLCDLLQQPWKIGADWFYYHLLDADPAINYTQFQIQAGVDGTNMMRI 399
Query: 313 LDP---------DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+P DG ++ +VPEL P +++ P K PL VQE + DYP IV
Sbjct: 400 YNPRKQVSDNDPDGAFVTNWVPELADLPTEHLPRPEKTPLHVQEDCGVSVGDDYPYPIVE 459
Query: 364 HVQA 367
+ A
Sbjct: 460 YEAA 463
>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|444309630|ref|ZP_21145264.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|443487021|gb|ELT49789.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
Length = 461
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 102/266 (38%), Gaps = 68/266 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W+ GE A+ +L I Y ++ PDL G + SA L+FG +S R+ +
Sbjct: 198 WMIGEAAAIDQLYHFFDTTIRD-----YAGDRDRPDLDGT-SKLSAHLRFGEISPRQVWH 251
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A + H P +LIWR++ Y + P +++ N W S
Sbjct: 252 ATVSLMDQDHSTVPGGQ-KFLSELIWRDFHYHQLYYRPDIAEIDMRDTLANTRWQSNSVG 310
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQL----------RRLLDCTYC--------------- 303
+N+W+ G+TG P IDA MRQL R L+ C
Sbjct: 311 -----INSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASALCKNMQIDWREGEKWFW 365
Query: 304 -------------------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
PV G + D G+Y++++VPE+ P
Sbjct: 366 DTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDTKGVYVRKWVPEIAALPD 425
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYP 358
+I++P+ AP V +A ++ + YP
Sbjct: 426 CWIHKPFAAPPAVLREAGVVLGQTYP 451
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 61/193 (31%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
++ WRE+ Y + AH P + W EK AW G TGYP +DA
Sbjct: 280 EIAWREFSYHLLAHFPRLATANWDDRFDGFEWR-----RAEKDFKAWSRGMTGYPIVDAG 334
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MRQL R++ ++ +
Sbjct: 335 MRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSG 394
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
PV G + DPDG +++ +VPELR+ +YI+ P++AP V + A+ I+
Sbjct: 395 ADASPFFRIFNPVLQGEKFDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILG 454
Query: 355 KDYPERIVNHVQA 367
+ YPE +V+H A
Sbjct: 455 ETYPEPVVDHAGA 467
>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
Length = 277
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 74/277 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE A KL + ++ +K N+ P P TS S L G +S R +
Sbjct: 2 WTPGEEGAQEKLRTFIEDRLDGYKE-----NRDYP--AKPATSMLSPHLALGEISPARIW 54
Query: 208 WALHDHFNTIHEGRPPSHF-NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
D + + P + + ++ WR++ Y + AH P W
Sbjct: 55 ----DATRGLSKHLPAADIVHFRKEIAWRDFSYHLLAHFPRLATANWEDRFDRFEW---- 106
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------- 304
+ E+ NAW G TGYP +DA MRQL R++ ++ +
Sbjct: 107 -GSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAW 165
Query: 305 ----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
PV G + DPDG +++ +VPELR+
Sbjct: 166 FRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKL 225
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+YI+ P++AP V + A+ I+ + YPE +V+H A
Sbjct: 226 DAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGA 262
>gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
Length = 442
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 101/276 (36%), Gaps = 68/276 (24%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
RW GE A RL +++ G Y ++ PD G + S L+FG LS R+
Sbjct: 165 RWTPGEASA----RARLRDFLKTIARG-YAGDRDRPDRVGT-SGLSPHLRFGELSPRQV- 217
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
W P +L WRE+ + +P PW +
Sbjct: 218 WHAARFAAAEDAALGPGIEKFLSELGWREFCRHLLHDHPDLATENLQTNFDGFPWQSDG- 276
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------------------- 294
K L AW+ G+TGYP +DA +R+L
Sbjct: 277 ----KVLAAWQRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWF 332
Query: 295 -RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFP 331
L+D P N+ G + DPDG Y++R+VPEL+ P
Sbjct: 333 WDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLP 392
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+ I++PW+A A + K YP+ IV+H +
Sbjct: 393 AKLIHQPWQATPNELASAGVTLGKTYPQPIVDHARG 428
>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
Length = 475
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 71/287 (24%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE +A + + L + + S+K G + ++ P +T S + FG +S + ++
Sbjct: 201 WQIGEDKAQSQFFKFLEEGLASYKEGRNIPSK--PFVT----RLSPHIHFGEISPNQLWY 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+ ++ + HF +L WRE+ Y+ NP PW E
Sbjct: 255 GVQ----SVADNEHVDHF--CSELGWREFSYSQLFVNPSLPTHNLQSKFDAFPWREEDTS 308
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------- 304
+K+ L AW+ G+TG P +DA MR+L R++ ++ V
Sbjct: 309 SKDSLLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRMIVASFLVKNLRIHWHQGERWFW 368
Query: 305 --------------------C------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C PV G+R D +G YIK++VPE+ P
Sbjct: 369 DTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQGQRFDAEGDYIKKFVPEISLLPK 428
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN---HVQASLENKQYLK 376
+Y++ PW+AP V ++A + + YP+ I++ +A+LE + LK
Sbjct: 429 KYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREAALEAFKSLK 475
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 159/449 (35%), Gaps = 109/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRE---------LNFTKL 57
H G R R+LL+ LA+L + G L + +G P ++ + ++++ L
Sbjct: 40 HAGAPRVRYLLDALAELRGAYQERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGL 99
Query: 58 CFEQDCE--------GVKPYQSFPTGSHPPRYQPCKT----------LLNFRDLSGLPPR 99
E+D + GV HPP +RD P
Sbjct: 100 ARERDADVRLALDDAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPY 159
Query: 100 PKEDID--FRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P+ D D T + +E L + F ++ F +P TEA
Sbjct: 160 PEPDADDLVDAATLESAAEDLTNGDAEFDIAVG--GLPTISDLGFEEPSASVQPAGTEAA 217
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F + Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 218 ---RERLS----AFCADAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 268
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W + ++
Sbjct: 269 REGVGGERDESVEEFQSQLAWREFYAHVLRGHPNVVTENYKEYEEDIAWR-----DDDEE 323
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 324 LAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 383
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YIKRYVPEL I+E
Sbjct: 384 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE 443
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 444 -WHELTDLERER---LAPDYPEPIVDHAE 468
>gi|349573536|ref|ZP_08885514.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
gi|348014842|gb|EGY53708.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
Length = 504
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/434 (23%), Positives = 152/434 (35%), Gaps = 108/434 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+ +CL DL QL G L V G P + +L ++ +D E +
Sbjct: 77 RLTFICQCLDDLAAQLAELGMPLHTVHGLPEEVLPELAARCGAAEVVCAEDYEPAAIDRD 136
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTF-----------------GTM 114
G+ Q C+ LL+ D LP + R T G
Sbjct: 137 NRVGARL-MAQNCR-LLSVCDQVLLPKSTVMNKQGRPYTVFTPYKKAWLALYADIYAGWQ 194
Query: 115 SESLQREVSLFQTVPKPEQFHKYP------EMDFGDPLIRWLGGETEALIKLNERLSQEI 168
+ +V+ Q PE + ++ F D ++ GGE A L
Sbjct: 195 PVDIHADVAALQR-GLPEHLRQAAAPLRPADLGFADSVLIQAGGERAAQAAWQRFLP--- 250
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
+ G Y + P G + S L+FG LSVRR A + +G + +
Sbjct: 251 ---RLGDYAVLRDFPARKGT-SGLSPHLRFGTLSVRRLAAAAY------ADGSEGASVWL 300
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+ +LIWRE+F H+P + P + W N+ + AW+ GQTGYP ID
Sbjct: 301 S-ELIWREFFQQFLYHHPEAAEQGFRPEYRALAW-----ENRADDIEAWQAGQTGYPLID 354
Query: 289 AVMRQLRRL------------------LDCTYCVCPVNFGRRL----------------- 313
A MR LRR L C + + F R+L
Sbjct: 355 AAMRHLRRSGQMHNRLRMVCASFFCKDLLCDWRIGEAWFARQLLDFDLAANNGGWQWAAG 414
Query: 314 ---------------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
DP G +I+R+VPEL + I+ PW A+ I
Sbjct: 415 TGCDAQPYFRHFNPLTQSQKFDPQGQFIRRHVPELAHLDARSIHAPWL-------WADNI 467
Query: 353 ISKDYPERIVNHVQ 366
+ YP IV H +
Sbjct: 468 DTHGYPPPIVQHAR 481
>gi|451981013|ref|ZP_21929393.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
gi|451761776|emb|CCQ90640.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
Length = 483
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 100/257 (38%), Gaps = 71/257 (27%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y ++ P L + S L+FG +S+R + + +EG +LIWR
Sbjct: 226 YHKDRDFPALKHGTSGLSVHLRFGTISIREL---VRNAMGRKNEGAR----TWLSELIWR 278
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL- 294
+++ T+ Y + P +I W P KE + W G+TGYP IDA MR
Sbjct: 279 DFYQTILDRYSYVVRGAFRPEYDSIRW-----PGKESHFKKWCAGETGYPLIDAAMRHFA 333
Query: 295 ---------------------------------RRLLD------------CTYCVC---- 305
R L+D C C
Sbjct: 334 RTGWMHNRLRMVVASFLVKDLLVDWRKGEAWFARNLIDFELASNNGGWQWCASTGCDAQP 393
Query: 306 ------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPE 359
PV + DP+G +I+ VPEL F +I+ P AP +E+ C + KDYP+
Sbjct: 394 WFRIFNPVTQSKNFDPEGRFIRENVPELAAFSNTHIHWPHDAPDSEKERTGCRLGKDYPD 453
Query: 360 RIVNHVQASLENKQYLK 376
IV+H +L+ ++ LK
Sbjct: 454 PIVDH---ALQREKALK 467
>gi|422006662|ref|ZP_16353651.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
gi|414098878|gb|EKT60523.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
Length = 480
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 113/298 (37%), Gaps = 90/298 (30%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GE AL +L + SQ++ G Y +++ P + G TSQ S L G LS R+ +
Sbjct: 206 AGEKSALTRLRQFCSQKV-----GDYQNDRDIPSIDG--TSQLSPYLAVGVLSPRQCFNR 258
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREY-------FYTMSAHNPYYDQMEKNPICLNIPW 262
L + + F +L+WRE+ F +S H P+ I W
Sbjct: 259 LQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLSRHQPF------------IEW 306
Query: 263 LPESHPNKEKY-LNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------- 304
H N AWK GQTGYP +DA MRQL R++ ++ V
Sbjct: 307 TQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDWR 366
Query: 305 ---------------------------------------CPVNFGRRLDPDGIYIKRYVP 325
P G++ D G +I+ ++P
Sbjct: 367 KGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWLP 426
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
EL+Q P +YI+ P++ + N YPE IV+H QA L + K N +
Sbjct: 427 ELQQVPDKYIHTPYEWAVISNTALN------YPEPIVDHKQARLATLAAFETGKRNGL 478
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/452 (21%), Positives = 172/452 (38%), Gaps = 104/452 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FLLE +ADL + L+ G L I QG P I ++ + LN T L + +
Sbjct: 50 FPKT---GKFRAQFLLESVADLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHE 106
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT----FGTMSES 117
+ + T + K + G +++ F F +
Sbjct: 107 EVTAEE-----LTVEKRLKKALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQ 161
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALIKL 160
++R+ ++ +P P+ P++D G+ ++++ GGE +L
Sbjct: 162 VERKSTVAPVLPAPKSLPPLPDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERL 221
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIH 218
+ + Q K+ + + ++ G S S L GCLS R Y + + +
Sbjct: 222 QDYIWQ-----KNCLKNYKETRNEMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEH--Q 274
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--LNA 276
+ S + + +L+WR++F + A + + +++PW KE +
Sbjct: 275 RVKNDSTYWLIFELLWRDFFRFICAKHGNKIFFSQGLQGIDLPW-------KEDWQRFKL 327
Query: 277 WKNGQTGYPFIDAVMRQLRRL--------------------------------LDCTYCV 304
W+ G+TGYP +DA MR+L L Y V
Sbjct: 328 WQEGKTGYPLVDANMRELATTGFMSNRGRQNVASFLTKNLGINWLMGAEWFESLLIDYDV 387
Query: 305 CPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
C N+G + DP G Y++ ++PEL P I+EPWK
Sbjct: 388 CS-NYGNWNYTAGVGNDARGFRYFNIPKQSKDYDPKGDYLRYWLPELALVPGDKIHEPWK 446
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENK 372
Q++ + DYP +V+ ++ N+
Sbjct: 447 LSQEEQKRYRVRLGVDYPHPVVDFFKSVKGNE 478
>gi|331694491|ref|YP_004330730.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
Length = 462
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 79/285 (27%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE A + LS ++ Y ++ PD+ G + S LK+GC+ R LH
Sbjct: 198 GEDAAHRQWKAFLSDAVDR-----YGEDRNRPDVEGT-SRMSVYLKWGCIHPRTM---LH 248
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + R S +L WRE++ + P + + +P S +
Sbjct: 249 D----LSRHRSGSAETYRTELAWREFYADVLFRRPDSARHNYDRAFDALP--SASGKRAD 302
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------ 304
+ AW+ G+TG+P +DA MRQLR R++ ++ V
Sbjct: 303 ELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASFLVKDLHLPWWWGARHFMQLL 362
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
PV G R DPDG Y++R+VPEL P + +
Sbjct: 363 VDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDPDGDYVRRFVPELADVPGRAV 422
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
++PWK P GV + YP+ IV+H E ++ KA
Sbjct: 423 HQPWKLPDGVPDG--------YPQPIVDHRAERDEALARYERVKA 459
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 143/412 (34%), Gaps = 107/412 (25%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE------- 64
R +++ CL L + + G QL I+Q P KL +N + + +D E
Sbjct: 51 RVTYMIGCLQKLSSRYRELGSQLLIIQDDPSLGIPKLAIAINAKAVFWNRDVEPYAKQRD 110
Query: 65 ----------GVKPYQSFPTGSHPPR------------YQPCKTLLNFRDLSGLPPRPKE 102
G+K + H P Y P N + + P
Sbjct: 111 LSVSNALQQAGIKVQNFWDQVLHAPDEIRSGTKTPYTIYTPFWKKWNSKPKA--QPVETL 168
Query: 103 DIDFRHVTFGTMSES--LQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL 160
I + + G +E L E +TVP E +PL+ GE A KL
Sbjct: 169 PITYLELMTGLTTEEQELANEAGAIETVPTASSLGFIWE----NPLVI-EPGEDAAQQKL 223
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHE 219
E + I Y + SP + G TSQ SAALKFG + +R + A +T H
Sbjct: 224 EEFCDRAIYQ-----YQGQRNSPAING--TSQLSAALKFGAIGIRTVWQATQIVMDTCHS 276
Query: 220 GRPPSHFNITGQLI-WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+ Q I WRE++ + P P + PW N EK AW
Sbjct: 277 EEAYTSIRTWQQEIAWREFYQHAMYNFPELADGPYRPAFKDFPW-----DNDEKLFQAWC 331
Query: 279 NGQTGYPFIDAVMRQL----------------------------------RRLLDCTYCV 304
G+TGYP IDA MRQL ++L+D C
Sbjct: 332 RGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLCA 391
Query: 305 ---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
P ++ DP+G YI+ +VPELR+ + +
Sbjct: 392 NNGGWQWSASSGMDPKPLRIFNPATQAQKFDPEGEYIRHWVPELRRVDTKVL 443
>gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
Length = 478
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 113/301 (37%), Gaps = 85/301 (28%)
Query: 140 MDFGDPLIRWLGGETEALIKLNERLSQEIESFKS-----GVYLSNQVSPDLTGPPTSQSA 194
+D+ W GE AL +L++ LS ++ + GV ++++SP L
Sbjct: 197 LDWSTGFDLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVEATSRLSPHL--------- 247
Query: 195 ALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKN 254
FG + R+ WA H + ++ WRE+ +++ HNP
Sbjct: 248 --HFGEIGPRQV-WAAARHAAEAGDAPAGQVEKFLSEIGWREFNHSILFHNPDLPHTSFR 304
Query: 255 PICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV- 304
P PW+ AW GQTGYP +DA MR+L R++ ++ V
Sbjct: 305 PEFDGFPWV-----KNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVASFLVK 359
Query: 305 ----------------------------------------------CPVNFGRRLDPDGI 318
P+ G++ DP G
Sbjct: 360 HLLIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKFDPAGA 419
Query: 319 YIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQYL 375
Y++R+VPEL + P I+EPWKA ++ YPE IV H A +LE + L
Sbjct: 420 YVRRWVPELAKLPDALIHEPWKA----SPDPGAAAARIYPEPIVGHPAARERALEAYRGL 475
Query: 376 K 376
K
Sbjct: 476 K 476
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/464 (21%), Positives = 168/464 (36%), Gaps = 122/464 (26%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF- 59
MF G +G +R +FL+E LADL L+ G+L++ G P ++ + E + + +
Sbjct: 45 MF-GLDRVGPHRAQFLIESLADLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQ 103
Query: 60 ------EQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGT 113
E+D G G + TL + DL PRP ++I+ TF
Sbjct: 104 ALPGPEERDEAGSVRAGLADAGIDSETFW-THTLYHRDDL----PRPPDEIE---DTFTP 155
Query: 114 MSESLQREVSLFQTVPKPEQFHK----------------YPEMDFGDP--------LIRW 149
+ + + ++ P PE H + FG+ ++ W
Sbjct: 156 WKDRTEAKATVRPPKPAPEWVHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDW 215
Query: 150 LGGETEALIKLNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCL 201
GGET L ++ R +E + G S++ SP L FGCL
Sbjct: 216 TGGETAGLDRVATYVWERDCLREYRETRNGLVGADYSSKFSP-----------WLSFGCL 264
Query: 202 SVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYF-YTMSAHNPYYDQMEKNPICLNI 260
S R+ + + + E S + + +L WR++F Y ++ + + Q +I
Sbjct: 265 SPRQIHREVEQYETDRVEN--DSTYWLVFELTWRDFFQYQLAKYGAKWFQPGGIRDRDDI 322
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------------------------- 295
W G+TG PF+DA MR+L
Sbjct: 323 -----RWRRDRAQFERWARGETGIPFVDANMRELNATGYVSNRGRQNVASFLSNNLRIDW 377
Query: 296 ---------RLLD-------CTYCVCP-------------VNFGRRLDPDGIYIKRYVPE 326
RL+D C + V DP+G Y+ R+ PE
Sbjct: 378 RLGAAYFESRLVDYDVASNWCNWAYQSQVGNDSRDSYFEIVGQATHYDPEGAYVTRWCPE 437
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLE 370
L P +Y++EPW Q + DYP +++ ++AS E
Sbjct: 438 LSALPPEYVHEPWTMSEHEQADYGVELGTDYPAPMID-LEASYE 480
>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 477
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 167/438 (38%), Gaps = 117/438 (26%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R FL+E L +L ++ + G +L +V+G P+++ ++ ++++ + + +D V+PY
Sbjct: 56 RLWFLIESLVELQQRWREAGSRLLVVEGDPVAVLPQVAQQISAEAVVWNRD---VEPY-- 110
Query: 72 FPTGSHPPRYQPCKTL--------LNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
+ Q KTL ++ L P K + +G + + +V
Sbjct: 111 ----ARKRDRQVAKTLQADGRRVVADWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGQV- 165
Query: 124 LFQ---TVPKPEQFHKYPE--MDFGDPL--IR----WLGGETEALIKLNERLSQEIESFK 172
L Q TV P P M GDPL +R + G E +++ +F
Sbjct: 166 LAQKPATVAAPTGLVDLPPELMPAGDPLPALRESHGFQGSEICPCRPGEAAALEQLTTFC 225
Query: 173 SGVYLSNQVSPDLTGPPTSQ----SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
+G L + PD P T+ SAAL G LS R+ + A D +
Sbjct: 226 NGPLLGYE--PDRNFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAV 283
Query: 229 TGQ-LIWREYF------YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
Q L WRE++ + A PY +Q + PW N E + + WK GQ
Sbjct: 284 WEQELGWREFYQQALFYFPELADGPYREQWRR------FPW-----ENNEDWFDFWKEGQ 332
Query: 282 TGYPFIDAVMRQLR---------RLLDCTYCV----CPVNFGRR---------------- 312
TG P IDA MRQL R++ +Y V C +G R
Sbjct: 333 TGMPIIDAAMRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNG 392
Query: 313 --------------------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQ 346
D G YI+R+VPELR + + +G
Sbjct: 393 GWQWSASSGMDTKPLRIFNPATQASKFDSAGDYIRRWVPELRHVNTKDLL---SGEIGAL 449
Query: 347 EKANCIISKDYPERIVNH 364
E+ +DYPE +V+H
Sbjct: 450 ER------RDYPEPLVDH 461
>gi|338732806|ref|YP_004671279.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
gi|336482189|emb|CCB88788.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
Length = 462
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 112/290 (38%), Gaps = 73/290 (25%)
Query: 146 LIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR 205
L W GE A K L++ + +K+G Q + P L FG +S +
Sbjct: 189 LQHWNIGEKSAWKKFQTFLAEGLLYYKTGRDFPAQNAVSRLSP------HLHFGEISPHQ 242
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
W++ N+ + S F +L WRE+ Y + H P PW E
Sbjct: 243 I-WSV---VNSQKQDHNTSSF--LSELGWREFSYYLLYHFPTLPTQNFQSKFDYFPWKWE 296
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------ 304
S YL W +G+TG+P +DA MR+L R++ ++ V
Sbjct: 297 S-----PYLQHWCSGKTGFPIVDAGMRELWQTGYMHNRVRMIVASFLVKNLLIHWQIGLN 351
Query: 305 -----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
P+ G + DP G Y +RYVPEL++
Sbjct: 352 WFENHLLDADLASNSASWQWVAGSGADAAPYFRIFNPITQGEKFDPHGEYTRRYVPELKK 411
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
P +Y++ PW AP + EKA + + YPE I++ Q+ E Q + K
Sbjct: 412 LPDKYLFCPWDAPKSILEKAGVKLGRTYPEPIIDLKQSREEALQAFDQMK 461
>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
Length = 477
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 116/298 (38%), Gaps = 88/298 (29%)
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYW 208
+ GE AL KL + S+ ++ Y ++ P + G TSQ S L G LS R+
Sbjct: 202 IAGEHAALAKLRQFCSERVQD-----YQRDRDIPAING--TSQLSPYLALGVLSPRQCVN 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREY-------FYTMSAHNPYYDQMEKNPICLNIP 261
L + + + F+ +LIWRE+ F + H P+ + +I
Sbjct: 255 RLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQPFIKWTQ------HIQ 308
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------- 295
W P+ + +AWK+GQTGYP +DA MRQL
Sbjct: 309 WNPD-----DAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLVDWR 363
Query: 296 --------RLLDCTYCV----------------------CPVNFGRRLDPDGIYIKRYVP 325
+L+D T P G++ DP G +I+ ++P
Sbjct: 364 KGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLP 423
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
ELR P ++I+EP Q +S +YP IV+H QA L + + K I
Sbjct: 424 ELRDVPEKFIHEPHTWAESHQ------VSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475
>gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
symbiotica str. Tucson]
gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
symbiotica str. Tucson]
Length = 475
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 118/301 (39%), Gaps = 80/301 (26%)
Query: 139 EMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
E DP + GE AL +L Q+++ YL+ + P + G +S S L
Sbjct: 191 EYSHADPGEDFPAGEQAALQRLRAFCRQQVQD-----YLTQRDLPAIAGT-SSLSPYLAI 244
Query: 199 GCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICL 258
G LS R+ + L ++ E R F +LIWRE++ + A P +C
Sbjct: 245 GTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYP--------ALCR 296
Query: 259 NIPWLPESHP----NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV- 304
+ P++ + N E L AW+ G+TGYP +DA MRQL R++ ++ V
Sbjct: 297 HRPFIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVK 356
Query: 305 ----------------------------------------------CPVNFGRRLDPDGI 318
P + R DP G
Sbjct: 357 DLLIDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGT 416
Query: 319 YIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKE 378
+I++++PEL P I++P L Q++ + +YP +V+H QA LE +
Sbjct: 417 FIRKWLPELADVPDNDIHQP---HLWAQKQQLVL---NYPLPVVDHRQARLETLAAFEAA 470
Query: 379 K 379
K
Sbjct: 471 K 471
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 124/330 (37%), Gaps = 62/330 (18%)
Query: 3 PGTMH---IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59
PG +H + R +L+ CLA L + + GG+L I+QGSP + L + + T L +
Sbjct: 39 PGILHRDDVAPVRVAYLMNCLAALQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYW 98
Query: 60 EQDCE-----------------GVKPYQSF-----------PTGSHPPRYQPCKTLLNFR 91
+D E G++ +F TG+ P N+
Sbjct: 99 NRDVEPYARDRDTHVAAACKEQGIEIKTTFWDQLLCAPGAVLTGTGSPYTVYGPFWRNWC 158
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+ PP + F +S + + + +P P D P+
Sbjct: 159 TQAKAPP------ELEPTNFEGLSPAERERANAAGAMPLPSTTDLGFSWDQPLPVEP--- 209
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE AL +L SQ+ G Y + P G + SAALKFG + +R + A
Sbjct: 210 GEGAALQQLEAFCSQDQ---AIGAYDEQRNFPFALGT-SRLSAALKFGVIGIRTVWAAAA 265
Query: 212 DHFNTIHEGRPPSHFNITGQ-LIWRE------YFYTMSAHNPYYDQMEKNPICLNIPWLP 264
+ Q L WRE YF+ A PY Q + N PW+
Sbjct: 266 EAMERCRSDETRQSVTTWQQELAWREFYQHVMYFFPQLATGPYRPQWQ------NFPWV- 318
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
N E AW G+TGYP +DA MRQL
Sbjct: 319 ----NDEAQFQAWCAGRTGYPIVDAAMRQL 344
>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
Length = 476
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 101/271 (37%), Gaps = 72/271 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A + LS + + G + D T + S AL++G LS + ++
Sbjct: 205 WSMGEEAAQTRFEHFLSHGLACYDQGRDFPGR---DCT---SRLSTALQYGLLSPNQVWY 258
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L H S +L WRE+ Y H P P + PWL +
Sbjct: 259 GLEHAKADEH-----SVDKFRSELAWREFAYYQLFHFPSLPHKNFQPKFDHFPWLED--- 310
Query: 269 NKEKYLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV--------------- 304
E L W+ GQTG P +DA VM R+L ++ V
Sbjct: 311 --EVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVRMLVGSFLVKNLLLDWRAGAAWFK 368
Query: 305 --------------------C------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C PV G + D +G Y +R+VPEL P
Sbjct: 369 DCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQGEKFDRNGTYTRRFVPELANLPD 428
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
QY+++PW AP + +A + +DYPE +V+
Sbjct: 429 QYLFKPWMAPASILRQAGVRLGQDYPEPLVD 459
>gi|340505125|gb|EGR31487.1| hypothetical protein IMG5_108280 [Ichthyophthirius multifiliis]
Length = 1077
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 98/232 (42%), Gaps = 66/232 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM- 251
S L GC+S R Y + + + S + I +L+WR+YF ++ Y +++
Sbjct: 34 SIWLANGCISPRYIYQEVKKY--EKERIKNDSTYWIIFELLWRDYFKFVAI--KYKNKLF 89
Query: 252 EKNPI-CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------- 296
KN I L+I W E + Y WKNG+TGYP +DA MR+L
Sbjct: 90 YKNGIQGLDINWNQEIN-----YFELWKNGKTGYPLVDANMRELNSTGFMSNRGRQNVAS 144
Query: 297 --------------------LLD---------CTYCVCPVNFGRRL------------DP 315
LLD Y N GR+ DP
Sbjct: 145 FLNKNMWVDWRMGAEYFESILLDYDPESNYGNWQYSAGIGNDGRQFRVFNITKQSNDYDP 204
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+GIYIK ++PEL+ P ++EPWK Q++ II KDYPE I+++ +
Sbjct: 205 EGIYIKLWIPELKNVPKNKLFEPWKLNKEEQKEYGVIIGKDYPEPILDYFET 256
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 118/294 (40%), Gaps = 81/294 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP--TSQSAALKFGCLSVRRF 206
W GE A +L + + + + + G +L G P + S L G +S R+
Sbjct: 199 WEVGEEAAWRRLRDFVDEGLAHYAEGR--------NLPGKPFVSRLSPYLAHGEISPRQI 250
Query: 207 YWALHDHFNTIHEGRPPSHFNITG---QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
+W H + + E + N+ +L WRE+ + + H P + P PW
Sbjct: 251 WW----HLSRLAEEQGAWRRNVDAFLRELGWREFSWHLLYHFPDLPREPLRPEFQRFPWR 306
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV---------- 304
L AW +TGYP IDA MR+L R++ ++ V
Sbjct: 307 -----QDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMIVASFLVKDLRIPWQEG 361
Query: 305 -------------------------C------------PVNFGRRLDPDGIYIKRYVPEL 327
C PV ++ DP G Y++R++P+L
Sbjct: 362 EAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQKFDPQGDYVRRWLPQL 421
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH---VQASLENKQYLKKE 378
++ P +I+ PW+AP V E+A + K+YP +V+H +A+L + +++E
Sbjct: 422 QRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLVDHHEAREAALAAWEAIRRE 475
>gi|421599238|ref|ZP_16042485.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. CCGE-LA001]
gi|404268645|gb|EJZ33078.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. CCGE-LA001]
Length = 397
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 103/279 (36%), Gaps = 76/279 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L L +Y+ ++ PD G + S L+FG LS R+ +
Sbjct: 121 WTPGEIAARARLGAFLDHTAR-----LYVGDRDRPDRDGN-SRLSPHLRFGELSPRQVW- 173
Query: 209 ALHDHFNTIHEGRPPSHF----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
H P+ +L WRE+ + +P PW P
Sbjct: 174 ----HAARFAAAEDPALGQGVEKFLTELGWREFCRHLLYDHPDLATANLQANFDRFPWQP 229
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------ 294
+ +K L AW+ G+TGYP +DA +R+L
Sbjct: 230 D-----KKALAAWRRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWREGE 284
Query: 295 ----RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELR 328
L+D P N+ G + DPDG Y++R+VPEL+
Sbjct: 285 AWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELK 344
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
P + I++PW+A A + K YP+ IV+H +
Sbjct: 345 DLPAKLIHQPWQATPIELASAGLTLGKTYPQPIVDHARG 383
>gi|359407531|ref|ZP_09200008.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677570|gb|EHI49914.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 487
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 72/236 (30%)
Query: 188 PPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT---GQLIWREYFYTMSA 243
P TS+ S LKFG +S + ++A F+ S N+ +L WRE+ Y +
Sbjct: 246 PATSRLSPYLKFGQISPHQAWYAAEGSFHD-------SDVNLDMFRSELGWREFSYHLLK 298
Query: 244 HNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL--------- 294
NP N WL S ++L AW+ GQTGYP +DA MR+L
Sbjct: 299 SNPELKTTPLQAKFANFDWLDNS-----EHLRAWQIGQTGYPIVDAGMRELYQTGYMHNR 353
Query: 295 ----------RRLL-----------DCTY--------------------------CVCPV 307
+ LL DC + P+
Sbjct: 354 VRMIVGSFLVKNLLLDWHHGEAWFWDCLFDADAASNTASWQWIAGCGADAAPYFRVFNPI 413
Query: 308 NFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
G++ DPDG Y +R+VPEL + P +Y++ P+ AP V +A + YP +V+
Sbjct: 414 TQGQKFDPDGQYTRRFVPELAEMPSKYLFNPFDAPREVLMRAGVRLGATYPRPLVD 469
>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
[Herbaspirillum seropedicae SmR1]
Length = 494
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 63/251 (25%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TGQL 232
G Y + + P + GP + S L+FG +S+R A +H G+ + + +L
Sbjct: 235 GSYGAARDFPAVKGP-SYLSVHLRFGTISIRTLARAA---MQAMHAGQGAAGAAVWLSEL 290
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
WR++++ + H+P + P I W E P E AW G+TGYP +DA M
Sbjct: 291 TWRDFYFMILHHHPRVTRHAFKPEYDAIQW--EQGPQAEALFAAWCEGRTGYPLVDAAMA 348
Query: 293 QLR---------RLLDCTYCVCPVN---------FGRRL--------------------- 313
Q+ R++ ++ + F R L
Sbjct: 349 QINQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCD 408
Query: 314 -----------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
DPDG +I+RY+P+L + + I+ PW A + A ++ ++
Sbjct: 409 AQPYFRIFNPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQN 468
Query: 357 YPERIVNHVQA 367
YP IV+H QA
Sbjct: 469 YPRPIVDHAQA 479
>gi|395005572|ref|ZP_10389447.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
gi|394316499|gb|EJE53223.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
Length = 487
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 65/251 (25%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI 233
G Y + P + GP + S L+FG +S R H ++G +L+
Sbjct: 229 GRYEDARNFPAVKGP-SYLSVHLRFGTISPRLLARTAHGLAIKGNQGAA----TWLSELV 283
Query: 234 WREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
WR++++ + AH+P+ + P I W ES P ++ AW G+TGYP +DA M Q
Sbjct: 284 WRDFYHQILAHHPHVVEHSFKPAYDAIAW--ESGPEAQELFAAWCEGRTGYPLVDAAMAQ 341
Query: 294 LR---------RLLDCTYCV-------------------------------------C-- 305
+ R++ ++ V C
Sbjct: 342 INQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDA 401
Query: 306 --------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKD 356
PV+ + D G +I++Y+P+L P ++ PWKA PL +Q A ++
Sbjct: 402 QPYFRIFNPVSQSEKFDARGQFIRKYLPQLATLPDAALHAPWKAKPLELQ-AAGVVLGST 460
Query: 357 YPERIVNHVQA 367
YP IV+H +A
Sbjct: 461 YPHPIVDHDEA 471
>gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
Length = 497
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 116/287 (40%), Gaps = 74/287 (25%)
Query: 141 DFGDPLIRWLG--GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKF 198
D+ D L +G GE A+ KL E + ++ ++ G V P T + S L F
Sbjct: 194 DWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKG---KETVWPSKT---SQLSTHLHF 247
Query: 199 GCLSVRRFYWALHDHFNTIHEGRPPSHFN--ITGQLIWREYFYTMSAHNPYYDQMEKNPI 256
G +S + H ++H PS + +L WR++ + + + P + +
Sbjct: 248 GEISPFVVW---HTAKESVHLRSVPSDSSQKFLTELGWRDFCFHLLHYYPDFPEKSYKLN 304
Query: 257 CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------------------- 294
W +KEK L W+ G+TGYP +DA MR+L
Sbjct: 305 FDETIW----KVDKEK-LKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVASFLTKHL 359
Query: 295 ---------------------------RRLLDCT-------YCVCPVNFGRRLDPDGIYI 320
+R+ C Y + PV G R D DG Y+
Sbjct: 360 LIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGERFDSDGNYV 419
Query: 321 KRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++++PE+ + YI +PW+AP V +KA + K YP+ IVNH +A
Sbjct: 420 RKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKA 466
>gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei]
Length = 139
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 63/143 (44%), Gaps = 61/143 (42%)
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------- 296
+D+ME NPIC+ IPW + +P L W G+TG+P+IDA+M QLR+
Sbjct: 2 FDRMEGNPICIQIPW--DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHA 56
Query: 297 ------------------------LLDCTY---------------------CVCPVNFGR 311
LLD + C CPV FGR
Sbjct: 57 VACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGR 116
Query: 312 RLDPDGIYIKRYVPELRQFPIQY 334
R DP G YI+RY+P+L+ FP +Y
Sbjct: 117 RTDPSGDYIRRYLPKLKGFPSRY 139
>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
Length = 492
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 107/461 (23%), Positives = 163/461 (35%), Gaps = 148/461 (32%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE------- 64
R FL+E L +L + + G +L ++QG P+++ +L L+ + + + +D E
Sbjct: 56 RLWFLVESLIELQERWREAGSRLLVLQGDPLTLLPQLAALLDSSTVVWSRDVEPYARERD 115
Query: 65 -GV-KPYQS------------------FPTGSHPPRYQPCKTLLNFR------------- 91
GV K Q+ TG+ P L N+R
Sbjct: 116 RGVAKALQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTVAA 175
Query: 92 --DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
DL L ++ I G + Q+ + QT H + MD L
Sbjct: 176 PTDLQDLTAEQQQAIRSTETALGRLWADGQQALQRLQTE------HGFAGMD----LCPC 225
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ----SAALKFGCLSVRR 205
GE A+ ++ F G L + PD P T+ SAAL G LS R+
Sbjct: 226 RPGEVAAV--------DQLAVFADGPLLGYE--PDRNFPGTAGTSGLSAALSVGTLSPRQ 275
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQ-LIWREYF------YTMSAHNPYYDQMEKNPICL 258
+ A + + Q L WRE++ + A PY +Q +
Sbjct: 276 AWCAAQAAKDLARSDEQRQAIAVWEQELAWREFYQQALFHFPELADGPYREQWRR----- 330
Query: 259 NIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----C 305
PW N E + + WK+GQTG P IDA MRQL+ R++ ++ V C
Sbjct: 331 -FPW-----ENNEDWFDFWKDGQTGMPIIDAAMRQLQQSGWMHNRCRMIVASFLVKDLIC 384
Query: 306 PVNFGRR------------------------------------------LDPDGIYIKRY 323
+G R D DG YI+R+
Sbjct: 385 DWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKPLRIFNPATQASKFDADGDYIRRW 444
Query: 324 VPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
VPELR + + +G E+ + YPE +VNH
Sbjct: 445 VPELRHVSTKDLL---SGEIGALER------RGYPEPLVNH 476
>gi|326315673|ref|YP_004233345.1| deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 495
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 66/252 (26%)
Query: 189 PTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
P+ S L+FG LS RR A H+ G +LIWR++++ + AH+P
Sbjct: 248 PSYLSVHLRFGTLSPRRAARAAHERMRQGSTGAA----TWLSELIWRDFYFQVLAHHPQV 303
Query: 249 DQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
P IPW E P ++ AW G+TGYP +DA M Q+ R++
Sbjct: 304 AGGASFKPAYDAIPW--EDGPQAQERFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMV 361
Query: 299 DCTYCV-------------------------------------C----------PVNFGR 311
++ V C PV+ R
Sbjct: 362 VASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSR 421
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---S 368
+ DP G +I+ Y+P+L P ++++ PW+A E A + +YP IV+H +A +
Sbjct: 422 KFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPIVDHDEARQKT 481
Query: 369 LENKQYLKKEKA 380
L +K E A
Sbjct: 482 LARYAVVKSEAA 493
>gi|340785990|ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
gi|340551257|gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
Length = 510
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 63/251 (25%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TGQL 232
G Y ++ P + GP + S L+FG +S+R + +H+G I +L
Sbjct: 249 GQYGQSRDFPAVKGP-SYLSIHLRFGTISIRTL---ARLAYQALHQGAAAGGAAIWLSEL 304
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
IWR++++ + H+P+ P I W ES AW +G+TGYP +DA M
Sbjct: 305 IWRDFYFMILHHHPHVAGAAFKPEYDAIRW--ESGERAHSLFLAWCDGRTGYPLVDAAML 362
Query: 293 QLR---------RLLDCTYCV-------------------------------------C- 305
QL R++ ++ + C
Sbjct: 363 QLNQSGYMHNRLRMVTASFLIKDLGIDWRWGERYFAERLNDFDLAANNGGWQWAASSGCD 422
Query: 306 ---------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
P+ + D DG +I+RY+P+L ++I+ PW AP E+A + +D
Sbjct: 423 AQPYFRIFNPITQSEKFDADGKFIRRYLPQLSALGDRHIHAPWLAPAQELERAGIRLGQD 482
Query: 357 YPERIVNHVQA 367
YP +V H +A
Sbjct: 483 YPLPLVQHDEA 493
>gi|422415100|ref|ZP_16492057.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
Length = 467
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 107/276 (38%), Gaps = 89/276 (32%)
Query: 164 LSQEIESFKSG-----VYLSNQVSPDLTGPPTSQ-----------SAALKFGCLSVRRFY 207
L Q++ +F SG L+N V DL ++ S L+ G +S+R +
Sbjct: 184 LIQDLPAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKTSHLSRYLRTGEISIRTVW 243
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN---IPWLP 264
AL T EGR +L WR+++ + P + + PI N I W
Sbjct: 244 QALQKEEAT--EGRA----TFEKELCWRDFYNMIYVSFP---KQKNEPIQENYRFIEW-- 292
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------- 304
N ++ W+ GQTG+P +DA MRQL+ R++ ++
Sbjct: 293 ---ENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGE 349
Query: 305 ------------------------------------CPVNFGRRLDPDGIYIKRYVPELR 328
P + DPDG +I++YV ELR
Sbjct: 350 KYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELR 409
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P ++I++P K Q++ I+ KDYP I++H
Sbjct: 410 DLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDH 445
>gi|365087758|ref|ZP_09327644.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
gi|363417381|gb|EHL24461.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
Length = 496
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 75/303 (24%)
Query: 145 PLIRWLGGETEALIKL----NERLSQEI-ESFKSGV--YLSNQVSPDLTGPPTSQSAALK 197
P ++ LG E AL +L R +Q++ + F V Y + P + GP + S L+
Sbjct: 202 PTLQDLGFEPTALSQLRLPTGARGAQQLFDDFLGRVERYEDTRNFPAVKGP-SYLSVHLR 260
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
FG +S R H + EG P + ++ +LIWR++++ + H+P+ P
Sbjct: 261 FGTISPRLLARTAH---RLMQEGNPGATTWLS-ELIWRDFYFQILHHHPHVVGQSFKPAY 316
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV---- 304
I W E+ P + AW G+TGYP +DA M Q+ R++ ++ V
Sbjct: 317 DAIAW--ETGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVKDLG 374
Query: 305 ---------------------------------C----------PVNFGRRLDPDGIYIK 321
C PV+ + DP+G +I+
Sbjct: 375 IDWRRGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFDPEGKFIR 434
Query: 322 RYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKK 377
RY+P+L + ++ PW A PL +QE A + YP +V H A +LE +K
Sbjct: 435 RYLPQLAGLSAKALHAPWLARPLELQE-AGVRLGDTYPLPVVEHDAARHRTLERYAVVKA 493
Query: 378 EKA 380
A
Sbjct: 494 TAA 496
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 116/297 (39%), Gaps = 33/297 (11%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
R +FL L LD L+ G QL I +G P++ +L +E ++ +D PY
Sbjct: 46 KRKQFLFSGLRQLDEDLRKRGSQLIIRRGEPLAELTRLIQETGAEEIVALEDY---SPYA 102
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQ--TV 128
SH R P F + PP D T T + + V
Sbjct: 103 RR-RDSHIARELPLHL---FAGETVYPPSLVLKPDGSPYTVFTPFSRAWKALPFASPSVV 158
Query: 129 PKPEQFHKYPEMDFGDPLIRWL------GGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
PE+F P+ P+ + GE EAL +L LS + G +Q
Sbjct: 159 SLPERFPAVPDKLVSLPIPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPG 218
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP----SHFNITGQLIWREYF 238
P +FG LS R WA+ I P + +LIWRE++
Sbjct: 219 TSFLSP------YFRFGMLSPR---WAVFQVRKMIQITSSPDEKRGYEAWLNELIWREFY 269
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR 295
++ H P+ M NP I W P++ L AWK G+TGYP +DA MRQL+
Sbjct: 270 ISILYHYPHVLAMAFNPALRAIEW--RDAPSE---LQAWKEGKTGYPVVDAAMRQLK 321
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
PV + DP G YIK +VPEL P ++I+ PW PL +Q I +DYP +V+H
Sbjct: 388 PVLQSAKFDPQGRYIKTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDH 446
>gi|401762812|ref|YP_006577819.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174346|gb|AFP69195.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 470
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 117/297 (39%), Gaps = 80/297 (26%)
Query: 131 PEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPT 190
PE YP+ F D L E A+ KL + Q +G Y + + P + G +
Sbjct: 184 PELTFNYPQQSFDDLLFP--ASEKSAIAKLRQFCKQ-----GAGEYDARRDFPAVEGT-S 235
Query: 191 SQSAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYD 249
SA L G LS R+ + L + + G N +LIWRE++ + ++P D
Sbjct: 236 RLSACLALGVLSPRQCLHRLLAEQPQALDGGTGSVWLN---ELIWREFYRHLMTYHP--D 290
Query: 250 QMEKNPICLNIPWLPESH-PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLD 299
+ P IPW + E L AWK G+TGYP +DA MRQL R++
Sbjct: 291 LCKHRPF---IPWTDNVKWQHDEARLLAWKKGETGYPIVDAAMRQLNETGWMHNRLRMIT 347
Query: 300 CTYCV-----------------------------------------------CPVNFGRR 312
++ V P G++
Sbjct: 348 ASFLVKDLLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQK 407
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
D +G +I+R++P LR P + I++PW +K + DYP IV+H QA +
Sbjct: 408 FDANGDFIRRWLPALRHVPAKAIHDPW----AWADKQG--VKLDYPRPIVDHKQARV 458
>gi|372487277|ref|YP_005026842.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
gi|359353830|gb|AEV25001.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
Length = 482
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 87/229 (37%), Gaps = 70/229 (30%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+FGCLS+R+ P +LIWR++++ + P
Sbjct: 242 SVYLRFGCLSIRQLA-------GEAWRSGGPGAATWLSELIWRDFYFMVLDRFPQLPDGC 294
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
P + W L AW+ G+TGYP +DA MRQL R++ ++
Sbjct: 295 FKPEFDRVLW-----DEAPALLAAWREGRTGYPLVDAAMRQLAQTGWMHNRLRMVVASFL 349
Query: 304 VCPVNFGRRL-----------------------------------------------DPD 316
+ RL DP
Sbjct: 350 TKDLGLDWRLGEGHFADLLLDFDLSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQ 409
Query: 317 GIYIKRYVPELRQFPIQYIYEPWK-APLGVQEKANCIISKDYPERIVNH 364
G +I+RYVPEL P ++I+ PW+ APL Q+ A II +DYP +V+H
Sbjct: 410 GRFIRRYVPELAGVPDKHIHAPWRMAPL-EQQAAGVIIGRDYPAPVVDH 457
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/470 (21%), Positives = 172/470 (36%), Gaps = 138/470 (29%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FL E +ADL L+ G L + G P I L +ELN + + +
Sbjct: 50 FPKT---GKFRAQFLRESVADLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHE 106
Query: 62 DCE-----------------GVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDI 104
+ GVK + + P P K + +P
Sbjct: 107 EVTSEELAVEKSLKKALSQIGVKVNSFWGATLYHPDNLPFK-------IHQIPE------ 153
Query: 105 DFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLI 147
F + L+++ ++ T+P P++ P+++ G+ ++
Sbjct: 154 -----LFTNFRKQLEKKSTIDPTLPSPQKLPPLPKVEPGEIPQLLELGIEELIFDERAVL 208
Query: 148 RWLGGETEALIKLNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFG 199
++ GGET+ L++L+ R +E + G+ S++ SP L G
Sbjct: 209 KFQGGETKGLVRLHNYFWEKDCLRTYKETRNGMLGLDYSSKFSP-----------WLALG 257
Query: 200 CLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN 259
CLS R Y + + + + S + + +L+WR++F + A + + L+
Sbjct: 258 CLSPRLIYEQVQKYES--ERIKNDSTYWLVFELMWRDFFRFICAKHGNRIFRKSGLQGLD 315
Query: 260 IPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRL---------------------- 297
IPW + K W+ G+TGYP +DA MR+L
Sbjct: 316 IPWKEDW-----KRFQLWQEGKTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIN 370
Query: 298 ----------LDCTYCVCPVNFG------------------------RRLDPDGIYIKRY 323
L Y VC N+G + D G Y++ +
Sbjct: 371 WQMGAEWFESLLIDYDVCS-NYGNWNYTAGVGNDARGFRYFNVLKQSKDYDSKGDYLRHW 429
Query: 324 VPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
+ EL P I+EPWK Q+ I DYP IV+ Q+ N+Q
Sbjct: 430 LLELASLPGDKIHEPWKLSQEEQKHFRVRIGVDYPRPIVDFFQSIKNNEQ 479
>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
Length = 467
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 108/276 (39%), Gaps = 89/276 (32%)
Query: 164 LSQEIESFKSG-----VYLSNQVSPDLTGPPTSQ-----------SAALKFGCLSVRRFY 207
L Q++ +F SG L+N V DL ++ S L+ G +S+R +
Sbjct: 184 LIQDLPAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVW 243
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN---IPWLP 264
AL T EGR +L WR+++ + P + + PI N I W
Sbjct: 244 QALQKEEAT--EGRA----TFEKELCWRDFYNMIYVSFP---KQKNEPIQENYRFIEW-- 292
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------- 304
N ++ W++GQTG+P +DA MRQL+ R++ ++
Sbjct: 293 ---ENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGE 349
Query: 305 ------------------------------------CPVNFGRRLDPDGIYIKRYVPELR 328
P + DPDG +I++YV ELR
Sbjct: 350 KYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELR 409
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P ++I++P K Q++ I+ KDYP I++H
Sbjct: 410 DLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDH 445
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/432 (21%), Positives = 158/432 (36%), Gaps = 99/432 (22%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L + L L ++ + GG L + +G + ++ RE + + + + P+Q+
Sbjct: 83 WLAQSLRTLGAEIAARGGSLILRKGPAARVVAEVVRESGASAVYWNGIAQA--PHQAVER 140
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPP---RPKEDIDFRHVTFGTMSESLQREVSLF---QTV 128
+ +F +PP R KE R + +R ++L + +
Sbjct: 141 QLEAALAKLGVDSQSFLGDLLVPPSAIRNKEGRGLR-----VFTPFWRRVLALGDPPKPL 195
Query: 129 PKPEQFHKYPEM---------------DFGDPLIR-WLGGETEALIKLNERLSQEIESFK 172
P P+Q P + D+ L W GE A +L + L S
Sbjct: 196 PAPKQLRAGPNIASDTLESWALEPTTPDWAGGLRESWTPGEASARARLRDFLKTIARS-- 253
Query: 173 SGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ 231
Y+ ++ PD G TS+ S L+FG LS R+ + A + P +
Sbjct: 254 ---YVGDRDRPDREG--TSRLSPHLRFGELSPRQVFHAAR-FAAAENPALGPGIEKFLSE 307
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291
L WRE+ + +P PW ++ K L AW+ G TGYP +DA +
Sbjct: 308 LGWREFCRHLLHDHPGLATENLQANFDGFPWKGDT-----KALTAWQRGATGYPIVDAGL 362
Query: 292 RQL----------------------------------RRLLDCTYCVCPVNF-------- 309
R+L L+D P N+
Sbjct: 363 RELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGA 422
Query: 310 --------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISK 355
G + DPDG Y++R+VPEL+ P + I++PW+A A + K
Sbjct: 423 DAAPYFRVFNPILQGEKFDPDGTYVRRWVPELKDLPAKLIHQPWQATPIELASAGVTLGK 482
Query: 356 DYPERIVNHVQA 367
YP+ I++H +
Sbjct: 483 TYPQPIIDHAKG 494
>gi|387906116|ref|YP_006336453.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
gi|387581008|gb|AFJ89722.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
Length = 505
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 169/486 (34%), Gaps = 154/486 (31%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKP 68
G R+ +L E L+ LD L +HGG L +++G+ + + + +
Sbjct: 57 GAQRW-WLHESLSKLDDALAAHGGSLILLRGNEHEAITGFASAIGAAMVVWNR------- 108
Query: 69 YQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT- 127
RY +T G K D+ R + T + L RE T
Sbjct: 109 -----------RYAKAQT--------GTDASIKRDLIDRGIAVSTFNGHLLREPWTVTTR 149
Query: 128 -------------------------VPKPEQFHKYP-------------EMDFGDPLIRW 149
+P P +P E++ W
Sbjct: 150 EGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPAHATPHVCTLRELELQPSAPDW 209
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVS--PDLTGPPTSQSAA-----LKFGCLS 202
GG E + S ++E+F L N +S P L P +++ + L+FG +S
Sbjct: 210 AGGLRETWQCGEQAASDQLEAF-----LENSLSDYPTLRDFPAARATSRLSPYLRFGNIS 264
Query: 203 VRRFYWA---LHDHFNTIHEGR-------PPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
VR+ ++A D + H R P + F ++ WRE+ Y + H Q+
Sbjct: 265 VRQVWYATLSAADAMRSAHTVRGIDSKDGPLNKF--LSEIGWREFSYHLLYHFAPLHQVN 322
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------ 294
++PW ++ K L W+ G+TGYP +DA MR+L
Sbjct: 323 FRRQFDSMPWRDDA-----KSLRKWQTGRTGYPLVDAGMRELWHTGWMHNRVRMVAASFL 377
Query: 295 ----------------RRLLDCTYCVCPVNF----------------------GRRLDPD 316
L+D P ++ ++ DP
Sbjct: 378 SKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQAQKFDPH 437
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQ 373
G Y +R+VPEL Q ++ PW A ++A+ + + YP IV+H A +LE+ +
Sbjct: 438 GDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQCARARALESVK 497
Query: 374 YLKKEK 379
L E
Sbjct: 498 RLDSES 503
>gi|406706534|ref|YP_006756887.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB5]
gi|406652310|gb|AFS47710.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB5]
Length = 474
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 81/291 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W E E+ LN+ + +I + Y +++ P ++G + S +K G + V Y
Sbjct: 202 WKISENESQNLLNDLIKNKINN-----YGTDRDIPSVSGT-SKLSPYIKHGQIHVENIYK 255
Query: 209 ALHDHFNTIHEGRPPSHFNI---TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
+ P + NI T +L WRE+ +++ + P + PW+
Sbjct: 256 KCSE--------IKPKNINIKKYTNELGWREFSHSLINYFPEMLKGNLRKEFDRFPWVKN 307
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------ 304
+K+L AWK G TGYP +DA MR+L R++ ++ V
Sbjct: 308 -----DKFLKAWKQGMTGYPIVDAGMRELYETGWMHNRVRMIVGSFLVKHLRIDWKEGEK 362
Query: 305 ----CPVNF-------------------------------GRRLDPDGIYIKRYVPELRQ 329
C ++F G + D G+Y+K++VPEL +
Sbjct: 363 HFRNCLLDFNEANNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGLYVKKWVPELNK 422
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ---ASLENKQYLKK 377
P ++I++PW+ + Q + II K+YP+ IV H A+L+ Q LKK
Sbjct: 423 VPEKFIHKPWEMDIKYQTALDTIIGKNYPKPIVIHEDARAAALKAFQTLKK 473
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/464 (22%), Positives = 163/464 (35%), Gaps = 111/464 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +G +L L LD +L + GG L +++G L EL + + +
Sbjct: 48 GTRPLGGAVRWWLDGALRSLDAKLAAQGGGLVVLEGDERETIAALAGELGAGAVYWNRRY 107
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPP---RPKEDIDFRHVTFGTMSESLQR 120
+G+ + + + +F P R F+ T +
Sbjct: 108 DGLA--RETDAALKRSLKEAGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAG 165
Query: 121 EVSLFQTVPKPEQFHKYPEM---------DFGDPLIR--WLGGETEA--------LIKLN 161
E+ P +FH+ PE G +R W GG EA L +L
Sbjct: 166 ELPAPLAEPAKWRFHRLPEALARRATRIDALGLLPVRPDWAGGLREAWEPSEEGGLARLE 225
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEG 220
L ++I Y + PD P TS+ S L+FG LS R+ + H EG
Sbjct: 226 AFLDKQIRG-----YGDARDRPDR--PATSRLSPYLRFGQLSARQVW---HAAQAAGREG 275
Query: 221 RPPSHFNIT---GQLIWREYFYTMSAHNP------YYDQMEKNPICLNIPWLPESHPNKE 271
+I +L WRE+ ++ H P Y D+ + +PW + E
Sbjct: 276 GAAVAADIEKFLSELGWREFNTSLLYHFPELPMRNYRDRFDA------MPWR-----SDE 324
Query: 272 KYLNAWKNGQTGYP---------FIDAVMRQLRRLLDCTYCV------------------ 304
AW G+TGYP + M R++ ++ +
Sbjct: 325 AAFAAWCRGRTGYPLVDAGMRELWATGWMHNRVRMVTASFLIKHLLIDWRAGERWFWDTL 384
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
PV GR+ DPDG Y++R+VPEL P I
Sbjct: 385 VDADIANNSANWQWVAGSGADAAPYFRIFNPVMQGRKFDPDGAYVRRWVPELAGLPADAI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
+EPW+A V E A ++ + YP IV+H A L+ K
Sbjct: 445 HEPWRAKPVVLEAAGVVLGRTYPAPIVDHDAARKRALGALEATK 488
>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
Length = 501
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 105/275 (38%), Gaps = 79/275 (28%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+WL GE A +L++ + Q + ++ + PD+ G + SAAL G LSV Y
Sbjct: 210 QWLPGEEAAWQQLDQFVEQALAGYRR-----QRDFPDIAGT-SGLSAALSAGALSVASCY 263
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPES 266
A G G+L WR+++ + A P + + P + W
Sbjct: 264 RAASQAM--ADAGSRDGATCWIGELAWRDFYRQIMAQFPRVSRGQAFRPETDLLQW---- 317
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------------RR---- 296
++ AW G+TGYP +DA MRQL RR
Sbjct: 318 -DQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMVTAMFLSKHLWLDWRRGEAF 376
Query: 297 ----LLDCTYCV----------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
L+D + PV G+R D +G +I R+VPELR
Sbjct: 377 FMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFNPVRQGQRFDSEGRFIARWVPELRGL 436
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
+ I+EPWK PL ++ DYP IV H
Sbjct: 437 DSKQIHEPWKQPL---------LAPDYPPPIVPHA 462
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 159/426 (37%), Gaps = 93/426 (21%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R FLLE L +L ++ + G QL +++G+P+ + +L ++L + + +D E + +
Sbjct: 50 RRWFLLESLRELQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRD 109
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKP 131
+ + + ++ L P + K + +G S +++ + VP P
Sbjct: 110 RELAAAL-KAIGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKA-KPVPAP 167
Query: 132 EQFHKYPEMDFGD-------PLIRWLG--------GETEALIKLNERLSQEIESFKSGVY 176
+ + D P+ W G GET AL +L ++ +E + G
Sbjct: 168 SELKALLKPDLSGLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHFAARAMEHYCEGRN 227
Query: 177 LSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ-LIWR 235
L ++ SAAL+ G LS R + A D ++ + Q L WR
Sbjct: 228 LPGDEGT------STLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWR 281
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR 295
E++ H P P PW E P + L AW++G TG P +DA MRQL
Sbjct: 282 EFYQQALFHFPELADGPYRPQWRQFPW--EDDPVR---LKAWQDGLTGVPIVDAAMRQLV 336
Query: 296 ---------RLLDCTYCV----C------------------------------------- 305
R++ ++ V C
Sbjct: 337 QTGFMHNRCRMIVASFLVKDLICDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP 396
Query: 306 -----PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER 360
P + DP+ YI+R++PEL + + +G E+ + YPE
Sbjct: 397 LRIFNPFTQASKFDPEATYIRRWLPELAHINTKDLI---SGDIGALER------RGYPEP 447
Query: 361 IVNHVQ 366
IVNH Q
Sbjct: 448 IVNHKQ 453
>gi|407804385|ref|ZP_11151209.1| DNA photolyase [Alcanivorax sp. W11-5]
gi|407021678|gb|EKE33442.1| DNA photolyase [Alcanivorax sp. W11-5]
Length = 488
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 101/272 (37%), Gaps = 76/272 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L + + + +K+ Q L S AL G LSV+R Y
Sbjct: 204 WQPGEAAARRRLQGFVREGLAGYKAQRDFPAQAGTSLL------SVALSAGTLSVQRCYL 257
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+ + + I G+L WR+++ + A+ P+ P WL
Sbjct: 258 MAREAMAREADTEEGALVWI-GELAWRDFYRQIMANFPHL--AWGAPFREETKWL--QWQ 312
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQL---------------------------------- 294
E+ AW G+TGYP +DA MRQL
Sbjct: 313 RDEQCFQAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMVTAMFLTKHLFIDWRWGEAYFM 372
Query: 295 RRLLDCTYCV----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
R+LLD + P+ R DPDG++IK+YVPEL
Sbjct: 373 RQLLDGDFAANNGGWQWSASTGTDAAPYFRVFSPIRQSERFDPDGVFIKQYVPELHGLTG 432
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+ +++PW AP+ ++ DYP IV H
Sbjct: 433 KALHQPWLAPM---------LAPDYPSPIVQH 455
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 114/289 (39%), Gaps = 86/289 (29%)
Query: 141 DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGC 200
DFG W GE A KL + + ++++ +K G L + + L P L G
Sbjct: 201 DFGR---MWTPGEAGAQEKLADVVDRDLQDYKRGRDLPSVHATSLLSP------HLAHGE 251
Query: 201 LSVRRFYWALHDHFNTIHEGRPP------SHFNITGQLIWREYFYTMSAHNPYYDQMEKN 254
+S R + A+ G PP +HF +L WR++ Y + A P +
Sbjct: 252 VSPARIWHAV--------RGLPPKASEDVAHFR--RELAWRDFCYNLLAEFPKLHDRNWD 301
Query: 255 PICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV- 304
W ++ K +AW G TGYP +DA MRQL R++ ++ +
Sbjct: 302 DRFDGFKWEYDA-----KEFSAWTMGLTGYPIVDAGMRQLWRTGFMHNRVRMITASFLIK 356
Query: 305 ----------------------------------------------CPVNFGRRLDPDGI 318
PV G + DPDG
Sbjct: 357 DLMIDWRRGERWFRDTLVDADPANNSANWQWVAGSGADASPFFRIFNPVLQGEKFDPDGD 416
Query: 319 YIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
Y++ +VPEL + +Y+++P++AP V EKA + K YP+ IV+H A
Sbjct: 417 YVREHVPELARLDRKYVHKPFEAPEHVLEKAGIELGKTYPKPIVDHAFA 465
>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
Length = 374
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGE +AL L +++ +G NQ T SA +GC+S R F+ A
Sbjct: 207 GGERQALKALQAKINDPTLFTLNGF---NQGVKTKLPHTTYLSAYQNYGCISTRHFWKAA 263
Query: 211 HDHFNTIHEGRPPSH-FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
E P S + GQ+++RE+FY ++ + +M N IC I W
Sbjct: 264 --------EKLPESKTIMLRGQIMYREFFYVAASQVNNFTKMAGNRICRQIEWY-----K 310
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQL 294
E++L+AW+ G+TGYP+IDAVMRQL
Sbjct: 311 NEEHLSAWQEGRTGYPYIDAVMRQL 335
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ RFL+ECL DLD LK G +L+++ G ++ +K +E T++ + +D E
Sbjct: 54 KTRFLIECLRDLDEGLKKCGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAE 106
>gi|422412010|ref|ZP_16488969.1| deoxyribodipyrimidine photo-lyase, partial [Listeria innocua FSL
S4-378]
gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
Length = 302
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 108/276 (39%), Gaps = 89/276 (32%)
Query: 164 LSQEIESFKSG-----VYLSNQVSPDLTGPPTSQ-----------SAALKFGCLSVRRFY 207
L Q++ +F SG L+N V DL ++ S L+ G +S+R +
Sbjct: 19 LIQDLPAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVW 78
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN---IPWLP 264
AL T EGR +L WR+++ + P + + PI N I W
Sbjct: 79 QALQKEEAT--EGRA----TFEKELCWRDFYNMIYVSFP---KQKNEPIQENYRFIEW-- 127
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------- 304
N ++ W++GQTG+P +DA MRQL+ R++ ++
Sbjct: 128 ---ENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGE 184
Query: 305 ------------------------------------CPVNFGRRLDPDGIYIKRYVPELR 328
P + DPDG +I++YV ELR
Sbjct: 185 KYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELR 244
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P ++I++P K Q++ I+ KDYP I++H
Sbjct: 245 DLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDH 280
>gi|392574712|gb|EIW67847.1| hypothetical protein TREMEDRAFT_21150, partial [Tremella
mesenterica DSM 1558]
Length = 548
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 138 PEMDFGDPLIRWLG----------GETEALIKLNERLS--QEIESFKSGVYLSNQVSPDL 185
PE DF P + +G G T+A ++LN LS Q + +F +P
Sbjct: 214 PEGDFSVPTLSQMGYPPSTTSIRGGTTQAHLRLNTFLSHPQAVATFSK-----PHTAPTA 268
Query: 186 TGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAH 244
P T+ S LKFGC+ VR +W + N+ GQL +R+ + A
Sbjct: 269 LEPSTTLLSPYLKFGCVGVREIWWGCKRVVEAYKGEKTKEPENMFGQLEFRDMYACAEAL 328
Query: 245 NPYYDQMEKNPICLNIPW---------------LPESHPNKEKYLNAWKNGQTGYPFIDA 289
P+++++ N +C I W P E+ AW+ G TG+P+IDA
Sbjct: 329 QPHFERIRGNSVCRYIDWGLQNQYDEQGREILPRPRGKEEDERRFEAWREGCTGFPWIDA 388
Query: 290 VMRQLR 295
MRQL+
Sbjct: 389 CMRQLK 394
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
V++ ++ D G +++Y PEL +FP +YIY P APL VQE A C+I +DYP I++
Sbjct: 462 VSWPQKTDKTGALVRKYCPELEKFPDKYIYAPHTAPLSVQEAAGCVIGQDYPLPILD 518
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
+G NR+ FLLE + DL QL S +L + +GSP + L RE T + +E+D
Sbjct: 46 VGLNRWSFLLESMKDLSDQLTSLNPRQKLHVCRGSPEEVLPVLWREWGITHIVWEKD 102
>gi|344924235|ref|ZP_08777696.1| deoxyribodipyrimidine photo-lyase [Candidatus Odyssella
thessalonicensis L13]
Length = 473
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 111/292 (38%), Gaps = 72/292 (24%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A KL +S+ I +K Q + L P L +G +SVR+ +
Sbjct: 195 WTPGEVGAQQKLANFISR-IAGYKQNRNYPAQQATSLLSP------HLAWGEISVRQLWH 247
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A+H ++ N ++ WRE+ Y + H P N PW
Sbjct: 248 AIHTQIR-LYPVLEQDALNFLSEIGWREFSYHLLYHVPTLPTHPLRQQFANFPW-----Q 301
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------- 304
E L W GQTGYP IDA MR+L R++ ++ V
Sbjct: 302 QDENALRKWSQGQTGYPIIDAGMRELWHTGYMHNRVRMIVASFLVKDLLLSWQQGEAWFW 361
Query: 305 --------------------C------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C PV G + DP+G Y+KR+VPEL
Sbjct: 362 DTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGEYVKRWVPELDLLSA 421
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKEKAN 381
YI++PW+A + A + YP +V+H +A +LE Q L + ++
Sbjct: 422 DYIHKPWQASAIKLKGAGIELGVTYPFPMVDHEKARHRALEIYQELPRSTSS 473
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 168/449 (37%), Gaps = 117/449 (26%)
Query: 2 FPGTMHIGY-----NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL---N 53
F GT H G+ +R +FLLE + DL + LK G L + +G P +K+ L +
Sbjct: 45 FGGTYHFGFPKTGPHRTKFLLESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSS 104
Query: 54 FTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV---- 109
+ F ++ + H C +N + G +ED+ F
Sbjct: 105 VHSVVFHEEVTQEELDVEKSIKKH------CG--VNIKTFWGHTLYHREDLPFSPSQTPD 156
Query: 110 TFGTMSESLQREVSLFQTVPKPEQFHKYPE----------MDFG------DP--LIRWLG 151
+ + ++ + + + + P+ F PE D G DP ++ +LG
Sbjct: 157 VYTQFRKRVESQAPVRKCLDMPKSFRPLPEGVEEGEIPTNKDLGVEDPVTDPRSVVDFLG 216
Query: 152 GETEALIKLNERL--SQEIESFKSGVYLSNQVSPDLTGP--PTSQSAALKFGCLSVRRFY 207
GE+ A+ +L+ L + I ++K + L G T S L G LS R +
Sbjct: 217 GESVAIDRLHHYLWETDAIATYK-------ETRNGLLGADYSTKFSVWLALGSLSPRHIF 269
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS---AHNPYYDQMEKNPICLNIPWLP 264
W + + N S + + +LIWR+YF ++ + +Y+ +N NI W
Sbjct: 270 WEVKRYEN--ERTSNNSTYWVLFELIWRDYFRYVAMKYGNQIFYEGGIQNK---NIRW-- 322
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------ 294
++ AWK G+TG PF+DA MR+L
Sbjct: 323 ---KQDKQLFRAWKEGKTGVPFVDANMRELAATGFMSNRGRQNVASFLTKDLHLDWRLGA 379
Query: 295 ----RRLLDCTYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQ 329
LLD C N+ G D +G Y++ +VPEL+
Sbjct: 380 EWFESMLLDHDVCSNYGNWLYSAGIGNDPREDRKFNVVKQGFDYDSEGDYVRTWVPELKN 439
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYP 358
++ W G+ EKA + + YP
Sbjct: 440 VHGGSVHIVWTLSRGILEKAGVTLGETYP 468
>gi|428779828|ref|YP_007171614.1| DASH family cryptochrome [Dactylococcopsis salina PCC 8305]
gi|428694107|gb|AFZ50257.1| cryptochrome, DASH family [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/465 (22%), Positives = 175/465 (37%), Gaps = 117/465 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
FP T G R +FL E +A+L L+ G L I G P +I L ++L T + F
Sbjct: 50 FPKT---GGFRAQFLRESVANLRENLQDKGSNLIIRCGQPETIISDLVKDLQITDVFFHS 106
Query: 62 DCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
+ + + Y T L L P ID F + +++
Sbjct: 107 EVTAEETHVEKELEKKLTNYGVKLTSFWGATLDHLDDLPMT-IDELPDVFTQYRKRVEKS 165
Query: 122 VSLFQTVPKPEQFHKY-PEMDFGD-----------------PLIRWLGGETEALIKLNER 163
+ + P P++ E++ GD ++ ++GGE+ + +L+E
Sbjct: 166 SQIRASFPSPDRLPSLSSEINCGDLPTLEELGVKTPLKDERGVLNFIGGESAGIKRLSEY 225
Query: 164 LSQE--IESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
+ +E ++ +K G S++ SP L GCLS R Y D
Sbjct: 226 IWEEDCLKVYKETRNGMLGANYSSKFSP-----------WLARGCLSPRYIY----DQVQ 270
Query: 216 TIHEGRPP--SHFNITGQLIWREY--FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
T E R S + + +L+WR+Y F + N + Q + I W KE
Sbjct: 271 TYEEERVKNNSTYWLIFELMWRDYFRFVCLKYGNSVFYQTGLQGV--QIQW-------KE 321
Query: 272 KY--LNAWKNGQTGYPFIDAVMRQLRRL-------------------------------- 297
+ W+ G+TGYP +DA MR++ +
Sbjct: 322 DWERFKLWQEGKTGYPLVDANMREIAKTGFMSNRGRQNVASFLTKNLGIDWRMGAEWFES 381
Query: 298 LDCTYCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQ 333
L Y VC N+G R DP G Y++ ++PELR+ P
Sbjct: 382 LLIDYDVCS-NWGNWNYTAGVGNDARDFRYFNIPKQSRNYDPKGDYLRHWLPELRKIPGD 440
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKE 378
I++P K Q++ I+ DYP +V+ +++ N++ K +
Sbjct: 441 LIHQPEKLSQVQQKEYGVILGVDYPRPVVDFMKSIKANEKLQKSQ 485
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 102/435 (23%), Positives = 152/435 (34%), Gaps = 82/435 (18%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +L L LD LK G L + +G + KL RE N K F D
Sbjct: 49 GPRSLGAAAQWWLANSLRALDTDLKKLGQHLVLRRGDAHEVLPKLAREAN-AKAVFWIDS 107
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPP--RPKEDIDFRHVTFGTMSESLQ-- 119
E + + + ++ DL P R KE R T Q
Sbjct: 108 EVSAEAARARDVAEALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRAQGE 167
Query: 120 --REVSLFQTVPKPEQFHKYPEM-DFGDPLIR--WLGGETEALIKLNERLSQEIESFKSG 174
R ++ + +P P K + D+ R W GG E + + F G
Sbjct: 168 PPRPLAAVRKLPPPVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDG 227
Query: 175 VYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF----NI 228
D G + S L+FG +S R+ + H R P+
Sbjct: 228 AIKGYAEGRDFPGKDHASHLSPHLRFGEISPRQVF-----HAARFAAERHPALSRDIEKF 282
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+L WRE+ + +P + + PW ++ K L AW+ G+TGYP +D
Sbjct: 283 LSELGWREFCRHLLFDHPDLHRHNLQSSFDDFPWRRDA-----KALRAWQQGRTGYPIVD 337
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MR+L R++ ++ V
Sbjct: 338 AGMRELWHTGAMQNRIRMVTASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAG 397
Query: 305 C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
C P+ G + DPDG Y+ R+VPEL + P I++PW+A A
Sbjct: 398 CGADAAPYFRIFNPILQGEKFDPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVT 457
Query: 353 ISKDYPERIVNHVQA 367
+ K YPE IV+H A
Sbjct: 458 LGKTYPEPIVDHKDA 472
>gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens]
Length = 727
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 106/275 (38%), Gaps = 76/275 (27%)
Query: 180 QVSPDLTGPPTSQ-SAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNIT---GQLIW 234
Q + +G PTS S L FG LSVR+ F+ EG ++ L +
Sbjct: 233 QKADGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGF 292
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
REY +S H P+ + + PW + E Y AW+ G+TGYP +DA MR+L
Sbjct: 293 REYSRYLSFHFPFTHERSLLANLKSFPWRAD-----EGYFKAWRQGRTGYPLVDAGMREL 347
Query: 295 R---------RLLDCTYCV----CPVNFGRR----------------------------- 312
R++ ++ V P +G +
Sbjct: 348 WATGWAHNRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGH 407
Query: 313 --------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
DPDG Y++R++PEL + P ++++ PW AP A + +YP
Sbjct: 408 ELDRIENPEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYP 467
Query: 359 ERIV------NHVQASL----ENKQYLKKEKANCI 383
IV +QASL E +K AN +
Sbjct: 468 RPIVEIGAARERLQASLAEMWERDAAMKAALANGL 502
>gi|448601043|ref|ZP_21656326.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734646|gb|ELZ86204.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 484
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 158/449 (35%), Gaps = 109/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIF---------QKLKRELNFTKL 57
H G R R+LL+ L++L + G L + +G P ++ ++ ++++ L
Sbjct: 40 HAGAPRVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGL 99
Query: 58 CFEQDCE--------GVKPYQSFPTGSHPPRYQPCKTLLNF------------RDLSGLP 97
E+D + GV HPP + RD
Sbjct: 100 ARERDADVRLALDEAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWCDRDKPDPY 159
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P P D T + +E L + F ++ F +P TEA
Sbjct: 160 PEPDADDLADAATLESAAEDLTNGDAEFDIAVG--GLPTISDLGFEEPSASVQSAGTEAA 217
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F + Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 218 ---RERLS----AFCADAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 268
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W + ++
Sbjct: 269 REGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTENYKEYEEDIAWR-----DDDEE 323
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 324 LAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 383
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YIKRYVPEL I+E
Sbjct: 384 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE 443
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 444 -WHELTDLERER---LAPDYPEPIVDHAE 468
>gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens]
gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
Length = 727
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 106/275 (38%), Gaps = 76/275 (27%)
Query: 180 QVSPDLTGPPTSQ-SAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNIT---GQLIW 234
Q + +G PTS S L FG LSVR+ F+ EG ++ L +
Sbjct: 233 QKADGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGF 292
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
REY +S H P+ + + PW + E Y AW+ G+TGYP +DA MR+L
Sbjct: 293 REYSRYLSFHFPFTHERSLLANLKSFPWRAD-----EGYFKAWRQGRTGYPLVDAGMREL 347
Query: 295 R---------RLLDCTYCV----CPVNFGRR----------------------------- 312
R++ ++ V P +G +
Sbjct: 348 WATGWAHNRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGH 407
Query: 313 --------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
DPDG Y++R++PEL + P ++++ PW AP A + +YP
Sbjct: 408 ELDRIENPEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYP 467
Query: 359 ERIV------NHVQASL----ENKQYLKKEKANCI 383
IV +QASL E +K AN +
Sbjct: 468 RPIVEIGAARERLQASLAEMWERDAAMKAALANGL 502
>gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
Length = 468
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 75/238 (31%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
P ++G + S LK G LS+R + A+ F ++ ++ +L WR++++ +
Sbjct: 235 PAVSGT-SRLSPHLKTGTLSIRTVFHAVAQQFGNGYDEAVETYIK---ELAWRDFYHMIY 290
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
AH P+ ++PW ++ AWK G+TG+P +DA MRQL+
Sbjct: 291 AHFPFTKTEAFIEKYRHLPW-----SRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHN 345
Query: 296 --RLLDCTYCV-----------------------------------------------CP 306
R++ ++ P
Sbjct: 346 RLRMIAASFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNP 405
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+ ++ DPDG YI+ YV EL FP YI+EPWK+ I DYP V+H
Sbjct: 406 IEQSKKFDPDGTYIRTYVQELASFPSLYIHEPWKSN----------IQTDYPAPTVDH 453
>gi|448583039|ref|ZP_21646508.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445729996|gb|ELZ81588.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 482
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 164/449 (36%), Gaps = 111/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIF---------QKLKRELNFTKL 57
H G R R+LL+ LA+L + G L + +G P ++ ++ ++++ L
Sbjct: 40 HAGAPRVRYLLDALAELRGAYRERGSDLLVARGDPRAVVPAVAAALDAERATWGIDYSGL 99
Query: 58 CFEQDCE----------GVKPYQS---FPTGSHPPRYQPCKTLLNF-----RDLSGLPPR 99
E+D + G +P P GS ++ + RD P
Sbjct: 100 ARERDADVRLALDDAGVGREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPEPY 159
Query: 100 PKEDID--FRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P+ D D T T +E+L + F ++ F +P TEA
Sbjct: 160 PEPDADDLADANTLETAAEALAD--AEFDVAAG--DLPTMSDLGFEEPSAAVQSAGTEAA 215
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F + Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 216 ---RERLS----AFCADAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 266
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W ++ +
Sbjct: 267 REGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTENYKEYENDIAWRDDA-----EE 321
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 322 LAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 381
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YIKRYVPEL I+E
Sbjct: 382 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE 441
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 442 -WHELTDLERER---LAPDYPEPIVDHSE 466
>gi|421889155|ref|ZP_16320215.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
gi|378965575|emb|CCF96963.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
Length = 522
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 64/246 (26%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R A H +H R + + +LIWR
Sbjct: 253 YHARRDYPAVRGP-SYLSTHLRFGTVSIRTL--AARAHSAMLHGSRGAATW--LSELIWR 307
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV---- 290
++++ + H P + P I W+ S + AW++ +TGYP +DA
Sbjct: 308 DFYFMILHHRPDLAEGASFRPEFDRIRWV--SGETGDVRFAAWRDARTGYPLVDAAMLQI 365
Query: 291 -----MRQLRRLLDCTYCV-------------------------------------C--- 305
M R++ ++ + C
Sbjct: 366 GQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQ 425
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +Y++ PW AP V + A + YP
Sbjct: 426 PWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYP 485
Query: 359 ERIVNH 364
IV+H
Sbjct: 486 RPIVDH 491
>gi|410633828|ref|ZP_11344468.1| deoxyribodipyrimidine photo-lyase [Glaciecola arctica BSs20135]
gi|410146488|dbj|GAC21335.1| deoxyribodipyrimidine photo-lyase [Glaciecola arctica BSs20135]
Length = 486
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 120/323 (37%), Gaps = 83/323 (25%)
Query: 127 TVPKPEQFHKYPEMDFG-DPL-------------IRWLGGETEALIKLNERLSQEIESFK 172
PK Q Y E+D G D L W GE A L+E L + +K
Sbjct: 167 AAPKDLQIEYYSEIDNGIDSLELMPEISWHSTIQTMWTPGEKGAAQHLSEFLPDGAKEYK 226
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+ + P+L G + S L FG +S + ++A + N E + +L
Sbjct: 227 N-----KRDFPEL-GATSKLSPHLHFGEISPNQIWYAGINALNGNTEDIGLDCY--LSEL 278
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
WRE+ + + H P+ Q +P + W N E L AW+ GQTG P +DA MR
Sbjct: 279 GWREFSHYLLFHFPHIPQKNFSPKFEHFIWR-----NDEDSLKAWQLGQTGIPIVDAGMR 333
Query: 293 QL------------------------------RRLLDCTY-------------------- 302
+L R DC
Sbjct: 334 ELWQTGTMHNRVRMVVASFLVKNLLIDWRKGERWFWDCLLDADLAANSASWQWVAGTGAD 393
Query: 303 ------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV G+R D G Y+KRY PEL + P ++I+ PW AP + + A + +
Sbjct: 394 ASPYFRIFNPVTQGQRFDVHGDYVKRYCPELSKMPDKFIHNPWDAPQNILDYAGVKLGDN 453
Query: 357 YPERIVNHVQASLENKQYLKKEK 379
YP+ +V+ + L L + K
Sbjct: 454 YPKPLVDLKASRLRALDALAQSK 476
>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 522
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/471 (21%), Positives = 173/471 (36%), Gaps = 103/471 (21%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
F+ + L DLD L+ G L + +G+ +FQ L + + +L ++ ++
Sbjct: 55 FINDSLRDLDTSLRKLGTALVVHEGTATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRD 114
Query: 75 GSHPPRYQPCKTL----------LNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSL 124
+ + Q + + L RD G R E + + S + ++
Sbjct: 115 VAAWTKTQRIQWIEYPQNGVIRRLTTRD--GWADRWHERMKVEQI-------SAPKHIAP 165
Query: 125 FQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPD 184
P F K +P ++ GGET A N+ L+ ++ + G ++S
Sbjct: 166 ILKSQSPTDFPKVLRTPPANPSLQ-AGGETPA----NKCLASFLQ--ERGRAYHKEMSSP 218
Query: 185 LTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT------GQLIWRE 236
LT + S L +GC+S++ + + E + + T + R
Sbjct: 219 LTADTSCSRLSPYLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRS 278
Query: 237 YFYTMSAHNPYYDQMEKNPICLNIPWLP------ESHPNKEKYLNAWKNGQTGYPF---- 286
+ H + ++E P P+ P PN +L AW+ G TGYPF
Sbjct: 279 FLSRCHWHCHFIQKLEDQPSIEFKPFNPALEGLRRLEPN-HAFLEAWQTGHTGYPFVDAC 337
Query: 287 ---------IDAVMRQL---------------------RRLLD----------------- 299
I+ MR + R LD
Sbjct: 338 IRYLNTHKWINFRMRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYSQIQMQSGTT 397
Query: 300 ---CTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
P+ GR DP GI+IKR+VPEL P ++++EPW Q+K +C++ K
Sbjct: 398 GINTLRIYNPIKQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKH 457
Query: 357 YPERIVNHVQASLENKQYLK--------KEKANCIINKDYPERIVNHVQAS 399
YP I++H +A + + K KE A+ + K ++ N + S
Sbjct: 458 YPLPIIDHAEAIRKARVKFKALRALPEFKEHADAVKQKHGSRKVSNRKKTS 508
>gi|407940619|ref|YP_006856260.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
gi|407898413|gb|AFU47622.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
Length = 496
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 64/236 (27%)
Query: 189 PTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
P+ S L+FG +S R H + EG P + ++ +LIWR++++ + H+P+
Sbjct: 252 PSYLSVHLRFGTISPRLLARTAH---RLMLEGNPGATTWLS-ELIWRDFYFQILHHHPHV 307
Query: 249 DQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLD 299
P I W E+ P + AW G+TGYP +DA M Q+ R++
Sbjct: 308 VGQSFKPAYDAIAW--ETGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVV 365
Query: 300 CTYCV-------------------------------------C----------PVNFGRR 312
++ V C PV+ +
Sbjct: 366 ASFLVKDLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEK 425
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVNHVQA 367
DP+G +I+RY+P L P + ++ PW A PL +QE A + YP +V H A
Sbjct: 426 FDPEGKFIRRYLPLLAALPTKALHAPWLARPLELQE-AGVRLGDTYPLPVVEHDAA 480
>gi|448568084|ref|ZP_21637692.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727546|gb|ELZ79157.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 484
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 157/449 (34%), Gaps = 109/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN---------FTKL 57
H G R R+LL+ L++L + G L + +G P ++ + L+ ++ L
Sbjct: 40 HAGAPRVRYLLDALSELRDAYRERGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGL 99
Query: 58 CFEQDCE--------GVKPYQSFPTGSHPPRYQPCKTLLNF------------RDLSGLP 97
E+D + GV HPP + RD
Sbjct: 100 ARERDADVRLALDEAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWHDRDKPDPY 159
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P P D T + ++ L + F ++ F +P TEA
Sbjct: 160 PEPDADDLADAATLESAAQDLTNGDAEFDIAVG--GLPTISDLGFEEPSASVQSAGTEAA 217
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F + Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 218 ---RERLS----AFCADAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 268
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W + ++
Sbjct: 269 REGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTENYKEYEEDIAWR-----DDDEE 323
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 324 LAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 383
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YIKRYVPEL I+E
Sbjct: 384 HDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKRYVPELSDVTANTIHE 443
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 444 -WHELTDLERER---LAPDYPEPIVDHAE 468
>gi|455641554|gb|EMF20725.1| deoxyribodipyrimidine photolyase [Citrobacter freundii GTC 09479]
Length = 472
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 116/296 (39%), Gaps = 86/296 (29%)
Query: 137 YPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
YP+ DF R++ E A+ +L Q +G Y + P + G + SA+L
Sbjct: 192 YPQQDFDAQ--RFVADEKLAIAQLRHFCQQ-----AAGEYEQQRDFPAIDGT-SRLSASL 243
Query: 197 KFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
G LS R+ L + + GR N +LIWRE++ + ++P
Sbjct: 244 ATGGLSPRQCLNRLLAEQPQALEGGRGSVWLN---ELIWREFYRHLMTYHP--------A 292
Query: 256 ICLNIPWLPESH----PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY 302
+C P++ + N +L AWK G TGYP +DA MRQL R++ ++
Sbjct: 293 LCRYQPFIRWTDRVQWQNNPTHLQAWKTGSTGYPIVDAAMRQLNATGWMHNRLRMITASF 352
Query: 303 CV-----------------------------------------------CPVNFGRRLDP 315
V P G + D
Sbjct: 353 LVKDLLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDR 412
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
DG +I+++VPELR P + I++PW EKA +S YP IV+H QA L
Sbjct: 413 DGEFIRQWVPELRDVPDKAIHDPWSWA----EKAQVTLS--YPRPIVDHKQARLAT 462
>gi|158999384|gb|ABW87016.1| cryptochrome [Musca domestica]
Length = 72
Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 294 LRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
RLLD + CPV +RLDP G YIK+YVPEL + P +I+EPW+ PL QEKA C+
Sbjct: 14 FERLLDSSLVTCPVALAKRLDPLGTYIKQYVPELAKVPQLFIHEPWRMPLKEQEKAECL 72
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 131/343 (38%), Gaps = 55/343 (16%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R +F+LE + DL L+S G L +V G P I L ++ ++
Sbjct: 49 GMHKTGVIRAKFILESVQDLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREV 108
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDF--RHV--TFGTMSESLQ 119
+ + S K LN R G KED+ F + + F T + ++
Sbjct: 109 AKEETHISTLV-----EEALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIE 163
Query: 120 REVSLFQTVPKPEQFH-----------KYPEMDFGDPLIR------WLGGETEALIKLNE 162
RE ++ +V P + + F LI + GGETE L +L
Sbjct: 164 RETTIRPSVETPVKIEVPDNLEASEIPSLASLGFSAGLIGIADQSPFKGGETEGLRRLET 223
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
L+ + +G + S + T S + GCLSV Y A+ + + +
Sbjct: 224 LLAGADTASLTGSFGSEE--------GTVLSPWIAMGCLSVHTVYHAVKKYEDKSLPKKQ 275
Query: 223 PSHFNITGQLIWREYFYTM---SAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
+ ITG L+WR+YF M + + Q N I P + + WK
Sbjct: 276 AAAI-ITG-LLWRDYFRFMFKKHGNKFFLQQGFSNEI-------PAYELVGDALFDRWKR 326
Query: 280 GQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRL 313
G+TG PF+DA M QL R+L Y V +N L
Sbjct: 327 GETGDPFVDAAMHQLNTIGFISHTARMLVAHYLVSNLNISHLL 369
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/459 (21%), Positives = 173/459 (37%), Gaps = 116/459 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF-- 59
FP T G R +FLLE + DL L+ G L + P ++ +L ++L ++ +
Sbjct: 72 FPKT---GVFRAQFLLESVTDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDEVYYYR 128
Query: 60 EQDCEGVKPYQSFPTGSHPP----RYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS 115
E E + + +P + TL + DL R E F
Sbjct: 129 EVTSEELAVETTLEKALNPLDVSLKSYWGATLYDLDDLPFSINRIPE-------VFTQFR 181
Query: 116 ESLQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALI 158
+ +++ +++ + P P++ P+++ G+ ++++ GGET +
Sbjct: 182 KQVEKNGTIYASFPTPQRLPILPQIEVGELPTLQKLGLETPQFDQRSVLKFQGGETAGIS 241
Query: 159 KLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHF 214
+L + + ++ ++ +K Q + G S S L GCLS R Y DH
Sbjct: 242 RLTDYIWEQDCLKDYK-------QTRNGMLGANYSSKFSPWLALGCLSPRFIY----DHV 290
Query: 215 NTIHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
E R S + + +L+WR+YF + + ++IPW KE
Sbjct: 291 QDYEEQRVKNDSTYWLVFELLWRDYFRFICLKHGNKIFRLSGLQGVSIPW-------KED 343
Query: 273 Y--LNAWKNGQTGYPFIDAVMRQLRRL--------------------------------L 298
+ W+ G TG+P +DA MR+L L
Sbjct: 344 WERFECWRTGTTGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGINWKMGAEWFESL 403
Query: 299 DCTYCVCPVNFG------------------------RRLDPDGIYIKRYVPELRQFPIQY 334
Y VC N+G + D +G Y+K ++PEL P
Sbjct: 404 LVDYDVCS-NWGNWNYTAGVGNDARGFRYFNIPKQAKDYDSNGDYVKHWLPELAALPASK 462
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
++EPW Q++ + DYP +V+ +++ NK+
Sbjct: 463 VHEPWMLQPVEQKRFGVKLGVDYPNPVVDLMKSVQSNKK 501
>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
Length = 471
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 103/271 (38%), Gaps = 72/271 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L+ L+ G Y + P + G + S L +G +++ +
Sbjct: 197 WTPGEAGARARLDAFLADGF-----GEYDRQRDLPGVAGT-SGLSPHLHWGEIAIDAVW- 249
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
GR + +LIWRE+ + H P +PW ES
Sbjct: 250 ----RAAVAAPGRDAARQTFLKELIWREFAAYLLWHTPDLATRPMKAQFAAMPWR-ESAA 304
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------- 304
+ L AW++G+TG P +DA MRQL R++ ++ V
Sbjct: 305 D----LAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQAGERWFH 360
Query: 305 -C-------------------------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C PV GR+ DPDG Y++R+VPE+ P
Sbjct: 361 DCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDGAYVRRFVPEIANLPD 420
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+Y++ PW+AP V A + YP IV+
Sbjct: 421 KYLHAPWEAPEIVLRGAGVRLGASYPRPIVD 451
>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
Length = 560
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 67/266 (25%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R H H +H R + + +LIWR
Sbjct: 291 YHARRDYPAVRGP-SYLSTHLRFGTVSIRTLA--AHAHAAMLHGSRGAATW--LSELIWR 345
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
++++ + H P P I W+ + AW++ +TGYP +DA M Q+
Sbjct: 346 DFYFMILHHRPDLAGGASFRPEFDRIRWVDGD--AGDVRFAAWRDARTGYPLVDAAMLQI 403
Query: 295 R---------RLLDCTYCV-------------------------------------C--- 305
R R++ ++ + C
Sbjct: 404 RQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQ 463
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +Y++ PW AP V + A + + YP
Sbjct: 464 PWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYP 523
Query: 359 ERIVNHV---QASLENKQYLKKEKAN 381
IV H A+LE K E+ +
Sbjct: 524 RPIVEHAAARAATLERYAPAKVERTS 549
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 105/278 (37%), Gaps = 74/278 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L + L ++ +K G + PD + S L FG +S R +
Sbjct: 203 WTPGEHGARERLGQFLDHGLKGYKEG-----RNHPDRENV-SRLSPHLHFGEISPRTAWH 256
Query: 209 ALHDHFNTIHEGRPPSHFN---ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
A+ E P + +L WRE+ Y++ +P PW
Sbjct: 257 AVRHAM----EADPTIETDGDCFLSELGWREFSYSLLYTHPDLPTQPLQHKFAGFPW--- 309
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------------ 304
+K L AW+ G+TGYP +DA M R++ ++ +
Sbjct: 310 --DKNDKALRAWQMGKTGYPIVDAGMRQLWQTGWMHNRVRMIVASFLIKDLMLPWTAGEE 367
Query: 305 -----------------------C------------PVNFGRRLDPDGIYIKRYVPELRQ 329
C PV G + DPDG YI+ +VPEL
Sbjct: 368 WFWDTLVDADLANNAASWQWVAGCGADAAPYFRIFNPVTQGTKFDPDGNYIRTFVPELAA 427
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
P +YI+EPW AP V ++A + K YP IV+H A
Sbjct: 428 LPAKYIHEPWTAPANVLKQAGVEMGKTYPMPIVDHKAA 465
>gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus]
Length = 140
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 58/132 (43%), Gaps = 56/132 (42%)
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR-----------------------------------LL 298
L+ WK QTG+P+IDA+M QLR+ LL
Sbjct: 9 LHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLL 68
Query: 299 DCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
D Y + CPV FGRR DP+G YI++Y+P L+ FP +YIYE
Sbjct: 69 DADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYE 128
Query: 338 PWKAPLGVQEKA 349
PW A Q++A
Sbjct: 129 PWTASEEEQKQA 140
>gi|406573866|ref|ZP_11049607.1| deoxyribodipyrimidine photo-lyase type I [Janibacter hoylei PVAS-1]
gi|404556646|gb|EKA62107.1| deoxyribodipyrimidine photo-lyase type I [Janibacter hoylei PVAS-1]
Length = 459
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 102/286 (35%), Gaps = 76/286 (26%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GE AL + L ++ Y + + PDL + S L G + R L
Sbjct: 194 AGEEAALERWRTFLDDDLAD-----YGTARDRPDLDAT-SRMSVHLAHGEIHPRTMLADL 247
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
H + EG +L WRE++ + H P + ++P+ + P
Sbjct: 248 AAHPDGGSEGLQ----RFVTELAWREFYADVLWHRPDSAWRDLRGALADLPY--DEGPET 301
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQ----------------------------------LRR 296
++ + AW+ G+TGYPF+DA MRQ L
Sbjct: 302 DRLVTAWREGRTGYPFVDAGMRQLAAEGFMHNRVRMVAASFLTKDLHVWWPVGARHFLDH 361
Query: 297 LLDCTYC----------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
LLD PV G R DPDG Y++R+VPEL P
Sbjct: 362 LLDGDLASNSHGWQWVAGTGTDAAPYFRVFNPVRQGERFDPDGAYVRRWVPELAHLPGAT 421
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
+ PW G + YP+R+V+H + E ++ +A
Sbjct: 422 AHSPWDHDEG--------HAHGYPQRVVDHAEERREALDRYERTRA 459
>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
solanacearum IPO1609]
gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
[Ralstonia solanacearum IPO1609]
Length = 522
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 67/266 (25%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y + + P + GP + S L+FG +S+R H H +H R + + +LIWR
Sbjct: 253 YHARRDYPAVRGP-SYLSTHLRFGTVSIRTLA--AHAHAAMLHGSRGAATW--LSELIWR 307
Query: 236 EYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
++++ + H P P I W+ + AW++ +TGYP +DA M Q+
Sbjct: 308 DFYFMILHHRPDLAGGASFRPEFDRIRWVDGD--AGDVRFAAWRDARTGYPLVDAAMLQI 365
Query: 295 R---------RLLDCTYCV-------------------------------------C--- 305
R R++ ++ + C
Sbjct: 366 RQSGYMHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQ 425
Query: 306 -------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
PV + DP G +I++Y+P+L + P +Y++ PW AP V + A + + YP
Sbjct: 426 PWFRIFNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYP 485
Query: 359 ERIVNHV---QASLENKQYLKKEKAN 381
IV H A+LE K E+ +
Sbjct: 486 RPIVEHAAARAATLERYAPAKVERTS 511
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 155/424 (36%), Gaps = 89/424 (20%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R FL+E L +L ++ + G +L +V+G P+ + +L + + + +D V+PY
Sbjct: 56 RLWFLIESLIELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRD---VEPYAR 112
Query: 72 FPTGSHPPRYQPC--KTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQ--T 127
R Q K ++++ L P K + +G + + +V Q T
Sbjct: 113 ERDRQVAQRLQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVT 172
Query: 128 VPKPEQFHKY--PEMDFGDPLIR------WLGGETEALIKLNERLSQEIESFKSGV---Y 176
VP P + G+PL+ + G E Q++ SF G Y
Sbjct: 173 VPAPAGLVDLDPAAVPSGEPLMARRDSHGFKGTELCPCRPGEAAAMQQLTSFCDGALFGY 232
Query: 177 LSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ-LIWR 235
++ P + G + SAAL G LS R+ + A + + Q L WR
Sbjct: 233 EPDRNFPGVVGT-SYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWR 291
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR 295
E++ H P PW N E + + W+ GQTG P IDA MRQL
Sbjct: 292 EFYQQALFHFPELSDGPYREQWRRFPW-----ENNEDWFDFWREGQTGMPIIDAAMRQLN 346
Query: 296 ---------RLLDCTYCV----CPVNFGRR------------------------------ 312
R++ +Y V C +G R
Sbjct: 347 QTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP 406
Query: 313 ------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER 360
D G YI+++VPELR + + +G E+ +DYPE
Sbjct: 407 LRIFNPATQASKFDAAGDYIRQWVPELRHVNTKDLL---SGEIGALER------RDYPEP 457
Query: 361 IVNH 364
+VNH
Sbjct: 458 LVNH 461
>gi|392310716|ref|ZP_10273250.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas citrea NCIMB
1889]
Length = 497
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/473 (22%), Positives = 181/473 (38%), Gaps = 113/473 (23%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H +RF+ + + D++ +L + ++QG+ I F L + + Q+
Sbjct: 54 HYDVRHWRFVQQSIDDINGRLID--VSVTVLQGTCIECFDALLEVWHINTIWSHQEIGLA 111
Query: 67 KPYQ-----SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
K +Q H +Q +T R G+ R D ++ + + E +
Sbjct: 112 KTFQRDLQVKQWCNEHQVTWQEFETGAVRR---GIKNRHDWDKNWHKMMRAAIVEI---D 165
Query: 122 VSLFQTVPKPEQFHKYPEMDFGDPLIRWL--------GGETEALIKLNERLSQEIESFKS 173
VS + KP Q + +++ P WL GG+T A L ++ +S+
Sbjct: 166 VSCIPWL-KP-QHEEIIKLNVFSPPQSWLEHNNEFQTGGQTCAEKVLGSFFNERGQSY-- 221
Query: 174 GVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+LS SPDL+ S+ SA L +G +S+R+FY L H++ +G S ++ +L
Sbjct: 222 AFHLS---SPDLSRAACSRMSAYLAWGNVSLRQFYQRLLAHWD--QKGWRKSLIALSSRL 276
Query: 233 IWR-------------EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
W EY A+N + Q + + I + +AWK
Sbjct: 277 HWHCHFIQKFESECSIEYAPLNRAYNTFTYQTDDDAI---------------RRFDAWKA 321
Query: 280 GQTGYPFIDAVMR----------QLRRLLDCTYC-------------------------- 303
G TGYP +DA MR ++R +L C
Sbjct: 322 GNTGYPLVDACMRALHVSGYVNFRMRAMLVSFLCHHLQLDWRWGAPHLAKLFLDFEPGIH 381
Query: 304 ------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
P+ + DP GI+I++YVPELR+ P + I+ PW
Sbjct: 382 YAQFQMQAGMTGINTLRIYNPIKQSQEKDPLGIFIRQYVPELRELPNELIHTPWLLTPME 441
Query: 346 QEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQA 398
Q + DYPE +V+ V++ + L + + + K+ + HVQ+
Sbjct: 442 QTMYQVYLGSDYPEPVVDIVESGRIARDVLWRWQKSLPARKEGARIVAKHVQS 494
>gi|407789405|ref|ZP_11136506.1| deoxyribodipyrimidine photolyase [Gallaecimonas xiamenensis 3-C-1]
gi|407206763|gb|EKE76713.1| deoxyribodipyrimidine photolyase [Gallaecimonas xiamenensis 3-C-1]
Length = 462
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 123/316 (38%), Gaps = 96/316 (30%)
Query: 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTG 187
P PE + + F L W E AL+ + +++ + +K+ + + D+T
Sbjct: 177 APVPE----FSDSAFDGQLADWPQDEEAALLAMRRFVTERVADYKAQ---RDFPALDIT- 228
Query: 188 PPTSQSAALKFGCLSVRRFYW-ALHDHFNTIHEGR--PPSHFNITGQLIWREYFYTMSAH 244
+ SAAL G +SVR+ W LH+H + + + P + N +LIWR+++ + H
Sbjct: 229 --SRLSAALSIGLVSVRQCLWRLLHEHQDAVWDDASGPGTWLN---ELIWRDFYQHVVWH 283
Query: 245 NPYYD-----QMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL----- 294
P Q + + I + E AW G+TG+P +DA MRQL
Sbjct: 284 YPLVVKGRAFQADTDAIAWSY---------DEAAFKAWCEGRTGFPIVDAAMRQLVQTGW 334
Query: 295 -----------------------------RRLLDCTYCV--------------------- 304
R L+D +
Sbjct: 335 MHNRLRMIVASFLVKDLLIDWRLGEAFFMRHLIDGDFAANNGGWQWAASTGTDAAPYFRI 394
Query: 305 -CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
P G+R DPDG +I+ ++PEL+ +Y++EP + P + DYP+ +V+
Sbjct: 395 FNPTEQGKRFDPDGRFIRSFLPELQGLDDKYLFEPQRYPGPL----------DYPKPLVD 444
Query: 364 HVQASLENKQYLKKEK 379
H QA + K K
Sbjct: 445 HKQARQKTLAMFKALK 460
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 131/319 (41%), Gaps = 52/319 (16%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT+ G R +F+LE + L LK GG L I +G+P I L +E T++ ++
Sbjct: 48 GTLKTGNIRAQFILESVLGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREV 107
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDF--RHV--TFGTMSESLQ 119
+ + S + K +N + G KED+ F + + F + ++
Sbjct: 108 AREETHVSTLVEN-----ALWKLRVNLKHFIGHTLYNKEDLPFPIKDIPDAFNQFKKKIE 162
Query: 120 R-----------------EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNE 162
R EV + T+ E+ H P+ + GGE E L+ L +
Sbjct: 163 RDSIIKPCFLAPDRINVAEVIDWGTLSSLEELHLSPQQKDQRADFEFTGGEAEGLVHLQK 222
Query: 163 RL--SQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
+ Q+ + K+ + +S SA L G LS R+ YW + EG
Sbjct: 223 VIVAMQQAATAKNLILVS------------KLSAWLAMGSLSPRKVYWEIKK-----MEG 265
Query: 221 RP--PSHFN-ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
P + FN I L+WR+YF M Y +P L ++ +E + + W
Sbjct: 266 VPNTKAMFNHILLGLLWRDYFRFMFKK---YGNTFFSPNGFGSQGLVDAENEQENF-SKW 321
Query: 278 KNGQTGYPFIDAVMRQLRR 296
K GQTG+ +DAVM +L +
Sbjct: 322 KTGQTGFAVVDAVMTELNQ 340
>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
Length = 520
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/456 (23%), Positives = 167/456 (36%), Gaps = 118/456 (25%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK 56
F GT H G R +FLLE + D + L G L IV P K+ + L K
Sbjct: 49 FEGTHHYKFPKTGIFRTQFLLESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTGLK 108
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTL-LNFRDLSGLPPRPKEDIDFR--HV--TF 111
+ E K T + C+ + ++ + G K D+ F+ HV ++
Sbjct: 109 VTLILQTEVTKE----ETDVEKRLQKICQEIKASYINCWGSTLYHKGDLPFQINHVPDSY 164
Query: 112 GTMSESLQREVSLFQTVPKPEQFHKYP----EMDFGD-PLIRWL---------------- 150
+ ++ ++ + + P++ P E+ +G+ P I L
Sbjct: 165 TGFRKDVEEKLRIRPEISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFN 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGP--PTSQSAALKFGCLSVRRFYW 208
GGET AL++L L + V + L G T S+ L GCLS RR +W
Sbjct: 225 GGETAALLRLKSYLWD-----TNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHW 279
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + + + S + + +L+WR+YF +S Y D++ + P
Sbjct: 280 ELEKY--ELQRTKNQSTYWVRFELLWRDYFKFVSMK--YGDRI----------FYPNGMK 325
Query: 269 NKEK-------YLNAWKNGQTGYPFIDAVMRQL--------------------------- 294
+ + AW+ G+TG PF+DA MR+L
Sbjct: 326 GRRQQWKKDMELFKAWQMGKTGVPFVDANMRELLATGWMSNRGRQNVASFLVKDLLLDWR 385
Query: 295 -------RRLLDCTYCVCPVNF----GRRLDP-----------------DGIYIKRYVPE 326
LLD C N+ G DP +G YI+ +VPE
Sbjct: 386 LGAEWFESLLLDHDVCSNYGNWNYVAGIGNDPRENRKFNMIKQSMDYDLEGNYIRMWVPE 445
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
LR+ P I+ PW G A + +YP +V
Sbjct: 446 LREIPGSKIHSPWMLSSGALSAAKIRLGDNYPNPVV 481
>gi|338974956|ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231555|gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 488
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 82/279 (29%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE+ A +L++ L I+ Y + + PD G TS+ S L+FG +S R+ +
Sbjct: 212 WTPGESAAQTRLHDFLETGIKG-----YATLRDRPDRDG--TSRLSPHLRFGEISPRQVW 264
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLI----WREYFYTMSAHNPYYDQMEKNPICL--NIP 261
H + P+ + G+ + WRE+ + P D EKN P
Sbjct: 265 -----HAANFAAAQKPAIASDVGKFLSELGWREFSRHLLFDLP--DLAEKNLQSSFDAFP 317
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------- 304
W ++ K L AW+ G+TGYP +DA MR+L R++ ++ V
Sbjct: 318 WRRDA-----KALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWR 372
Query: 305 ---------------------------------------CPVNFGRRLDPDGIYIKRYVP 325
PV G + DPDG Y+ R+VP
Sbjct: 373 HGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDPDGAYVSRWVP 432
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
EL + + I++PW+A A + K YPE +V+H
Sbjct: 433 ELARLSAKLIHQPWEATPMELAAAGVTLGKTYPEPMVDH 471
>gi|410086184|ref|ZP_11282897.1| Deoxyribodipyrimidine photolyase [Morganella morganii SC01]
gi|409767328|gb|EKN51406.1| Deoxyribodipyrimidine photolyase [Morganella morganii SC01]
Length = 479
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 80/299 (26%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GE AL +L + + +K+ + P + G TS+ SA L G LS R+
Sbjct: 200 SGEEAALQRLADFCQKHAADYKT-----ERDFPAIDG--TSRISAYLATGILSPRQCLSR 252
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPES 266
L HF + + + +LIWRE++ A +P D P+ +I W P++
Sbjct: 253 LRLHFPMVADEPESGAYTWLSELIWREFYLHQLAQHP--DISRHRPMQRWTESIIWSPDN 310
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------- 304
L AW+ G+TG+P +DA MRQL R++ ++ V
Sbjct: 311 -----SGLLAWQQGKTGFPLVDAAMRQLNETGWMHNRLRMITASFLVKDLLTDWRRGEHY 365
Query: 305 ----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
PV G+R DPDG +I+R++PEL +
Sbjct: 366 FMSQLIDGEFAANNGGWQWAASTGHDSVPYFRIFNPVTQGKRFDPDGSFIRRWLPELAEV 425
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYP 389
P +YI+ P + Q + DYP+ +V+H A + + + D P
Sbjct: 426 PAKYIHTPHEWAEKNQREI------DYPKPVVDHRMARIRAIDAYETARRTAAGGDDNP 478
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 106/275 (38%), Gaps = 68/275 (24%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L++ L+ ++ + G + + P LKFG +S R+ +
Sbjct: 201 WSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYTSRLSP------HLKFGEISPRQIWH 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A + E S ++ WRE+ YT+ P +M P P +
Sbjct: 255 AAQYAKQRLPEA-AESIDKFLSEIGWREFCYTLLDQFP---EMPNKPFKAQFDHFPWA-- 308
Query: 269 NKEKYLNAWKNGQTGYPFID---------AVMRQLRRLLDCTY----------------- 302
+K L AW+ G TGYP +D M R++ ++
Sbjct: 309 GTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTKHLLTHWRAGELWFW 368
Query: 303 -CVC-----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C+ P+ G + D G Y++RYVPE+ P
Sbjct: 369 DCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKAGEYVRRYVPEIANLPD 428
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+YI++PW+AP + E++ ++ YPE IV+H A
Sbjct: 429 KYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSA 463
>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
Length = 481
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/428 (21%), Positives = 156/428 (36%), Gaps = 97/428 (22%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIV-----QGSPISIFQKLKRELNFTKLCFEQDCEGV 66
R F+ E + +L + L+S GG L ++ +G P ++ KLK ++ +E D
Sbjct: 54 RVEFIWESVRELQQALRSQGGDLIMLHACAKEGIP-ALAVKLKASAVYSNRDYEPDAVAR 112
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPR--------PKEDIDFRHVT-FGTMSES 117
+ SH + K + F L P ++ + + F +
Sbjct: 113 DAEVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYP 172
Query: 118 LQREVSLFQTVPKPE----QFHKYPEMDFGD-PLIRWLGGETEALIKLNERLSQEIESFK 172
+ R K E + + + G+ L + G + + ER+++
Sbjct: 173 VDRYRQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEFQERMAR------ 226
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
Y + P + GP + S L+FG +S+R N E +L
Sbjct: 227 ---YKDARDFPAVKGP-SYLSVHLRFGTVSIRHLARTAWQQHNAGAE-------TWLNEL 275
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
IWR++++ + H+P Q+ + + + PN++ +AW G+TGYP +DA MR
Sbjct: 276 IWRDFYFQVLHHHP---QVAAGR-AFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMR 331
Query: 293 QL----------------------------------RRLLD--------------CTYCV 304
QL RL+D T C
Sbjct: 332 QLNQTGYMHNRLRMVTASFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCD 391
Query: 305 C--------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
PV + D G +I++YVPEL + I+ PW P Q+ +I KD
Sbjct: 392 AQPWFRIFNPVTQSEKFDAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKD 451
Query: 357 YPERIVNH 364
YP +V H
Sbjct: 452 YPAPVVEH 459
>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
JF-5]
Length = 471
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 102/271 (37%), Gaps = 72/271 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L+ L+ G Y + P + G + S L +G +++ +
Sbjct: 197 WTPGEAGARARLDAFLADGF-----GEYDRQRDLPGIAGT-SGLSPHLHWGEIAIDAVW- 249
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
GR + +LIWRE+ + H P +PW ES
Sbjct: 250 ----RAAVAAPGRDAARQTFLKELIWREFAAYLLWHTPDLATRPMKAQFAAMPWR-ESAA 304
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------- 304
+ L AW+ G+TG P +DA MRQL R++ ++ V
Sbjct: 305 D----LAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQAGERWFH 360
Query: 305 -C-------------------------------PVNFGRRLDPDGIYIKRYVPELRQFPI 332
C PV GR+ DPDG Y++R+VPE+ P
Sbjct: 361 DCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDGAYVRRFVPEIANLPD 420
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+Y++ PW+AP V A + YP +V+
Sbjct: 421 KYLHAPWEAPEIVLRGAGVRLGASYPRPVVD 451
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 123/315 (39%), Gaps = 56/315 (17%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV----- 66
R ++LL CL +L K G +L +Q P++ KL LN + + + D E
Sbjct: 51 RIKYLLGCLKELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRD 110
Query: 67 KPYQSFPTGSHPPRYQPCKTLLN------------------FRDLSGLPPRPKEDIDFRH 108
+ QS + P + LL+ F P+ + RH
Sbjct: 111 RAVQSALEAKNIPVHTVWDQLLHAPGEILTKGEDPYKVYTPFWKNWQKQPKAEPVGQIRH 170
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEI 168
+T T SE + ++P + D PL L GET A +L + + I
Sbjct: 171 LTGLTDSEQAKSATVGKISLPTLNDLGLTWDNDL--PL---LPGETAARERLEQFCDRAI 225
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
Y N+ P + G + SAALKFG +S+R + + + NI
Sbjct: 226 LD-----YDQNRNYPAIDGT-SVLSAALKFGAISIREIWQTTVTLWEDTRSDE--ARDNI 277
Query: 229 TG---QLIWRE------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
T +L WRE YF+ A P DQ + + PW N + AW +
Sbjct: 278 TAWRQELAWREFYQHALYFFPELADGPDRDQFK------DFPW-----DNNPDHFQAWCD 326
Query: 280 GQTGYPFIDAVMRQL 294
G+TGYP +DA MRQL
Sbjct: 327 GKTGYPIVDAAMRQL 341
>gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118]
gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens
T118]
Length = 492
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 66/257 (25%)
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
P + GP + L+FG +SVR+ A I R + + G+LIWR++++++
Sbjct: 241 PAVKGP-SYLGVHLRFGTVSVRQL--AATALQRQIQGSRGAAVW--LGELIWRDFYFSIL 295
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A+ P+ Q P I W E + + AW G+TGYP +DA M Q+
Sbjct: 296 ANFPHVAQGAFKPEYDAIKW--EHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHN 353
Query: 296 --RLLDCTYCVCPVN---------FGRRL------------------------------- 313
R++ ++ V + F R L
Sbjct: 354 RLRMVAGSFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNP 413
Query: 314 -------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
D DG +I+RY+P+L + P + I+ PW A + + ++YP IV H
Sbjct: 414 VTQSEKFDADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAA 473
Query: 367 A---SLENKQYLKKEKA 380
A +L+ +KK +A
Sbjct: 474 ARALTLQRYAVVKKHQA 490
>gi|423099697|ref|ZP_17087404.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
gi|370793782|gb|EHN61607.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
Length = 467
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 108/276 (39%), Gaps = 89/276 (32%)
Query: 164 LSQEIESFKSG-----VYLSNQVSPDLTGPPTSQ-----------SAALKFGCLSVRRFY 207
L Q++ +F SG L+N V DL ++ S L+ G +S+R +
Sbjct: 184 LIQDLPAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVW 243
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN---IPWLP 264
AL T EGR +L WR+++ + P + + PI N I W
Sbjct: 244 QALQKEEAT--EGRA----TFEKELCWRDFYNMIYVSFP---KQKNEPIQENYRFIEW-- 292
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------- 304
N ++ W++GQTG+P +DA MRQL+ R++ ++
Sbjct: 293 ---ENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGE 349
Query: 305 ------------------------------------CPVNFGRRLDPDGIYIKRYVPELR 328
P + DPDG +I++YV EL+
Sbjct: 350 KYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELQ 409
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P ++I++P K Q++ I+ KDYP I++H
Sbjct: 410 DLPNKFIHQPEKMSETEQKEHGLILGKDYPFPIIDH 445
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 107/270 (39%), Gaps = 76/270 (28%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWAL 210
GET A +L + + IE +K + P G TSQ SAALKFG + +RR + A
Sbjct: 210 GETPARERLEQFCHRAIEEYKE-----QRNFPAYDG--TSQLSAALKFGAIGIRRVWAAT 262
Query: 211 HDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ NT + S +L WRE++ H P +Q N P + N
Sbjct: 263 VEAMENTRSDEAQTSIRAWQQELAWREFYQHAMYHFPELEQGAYRQQFKNFP-----YEN 317
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQL----------------------------------R 295
E+Y AW G+TGYP +DA MRQ+ +
Sbjct: 318 NEEYFQAWCEGRTGYPIVDAAMRQMNNIGWMHNRCRMIVANFLTKDLLIDPRLGEKYFYQ 377
Query: 296 RLLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
RL+D P + ++ DPDG YI+ ++PELR F +
Sbjct: 378 RLIDGDLSANNGGWQWSASSGMDPKPIRIFNPASQAQKFDPDGEYIREWLPELRSFDTEE 437
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+ + +++A + DYP IV+H
Sbjct: 438 LL---SGNISKRDRA----AVDYPNPIVDH 460
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 151/412 (36%), Gaps = 106/412 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G+ IG +R RFLLE L LD L+ G +L +V G P + +L + + ++ +
Sbjct: 45 GSRRIGVHRARFLLESLTALDSALRQRGSKLLVVSGKPEEVIAQLVGQFDMRQVITLDEI 104
Query: 64 ----EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQ 119
V G P R L + +L P P + + + F T+ ++ Q
Sbjct: 105 APQERAVIARVRDALGPVPLRTAQSNGLFSEAEL----PCPLDQLPTVYSQFRTLIDARQ 160
Query: 120 REVSLFQTVPKPEQFHKYPE--------------MDFGDPL------IRWLGGETEALIK 159
+FQ P+Q PE + GD L + GGET AL +
Sbjct: 161 ---YVFQPQSAPDQLPPLPEGLDINAYGLPTQSQLGLGDALSLVPSAFPFSGGETAALAR 217
Query: 160 LNERL--SQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFN 215
L + L SQ + ++K Q + G S S L G LS RR L H +
Sbjct: 218 LRDYLWDSQNVRTYK-------QTRNGMIGSEYSSKFSPWLANGSLSPRRAAAELRRHES 270
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK-EKYL 274
G S + + +L+WRE+F Y Q P L E P + ++
Sbjct: 271 LY--GANESTYWLWAELLWREFFRCTLQR---YGQALFEPGGLKA---TERAPQQIDERF 322
Query: 275 NAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPV------------------ 307
W +G+TG P +DA MR+L R + +Y V +
Sbjct: 323 EQWAHGRTGMPLVDANMRELAATGYMSNRGRQVVASYLVSDLQQDWRHGAAWFEEHLIDY 382
Query: 308 ----NFG------------------------RRLDPDGIYIKRYVPELRQFP 331
N+G R+ DP G Y+ ++PELR P
Sbjct: 383 DPASNWGNWAYLAGVGSDPRLKRTFNALKQARQYDPQGEYVSLWIPELRNLP 434
>gi|407700132|ref|YP_006824919.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
gi|407249279|gb|AFT78464.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
Length = 474
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 70/271 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A L + + +K G + P G + S L FG +S + ++
Sbjct: 201 WAPGEDGAADNLADFIQNSARKYKDGRDI-----PSAKGT-SRLSPHLHFGEVSPNQVWY 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A+ D F + ++ + +L WRE+ Y + H P N PW ++
Sbjct: 255 AIKDKFGNSEDKSIETYLS---ELGWREFSYYLLFHFPTLPNKNFNDKFDKFPWRTDA-- 309
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------------- 296
K L AW+ G+TG P +DA MR+L +
Sbjct: 310 ---KALKAWQTGRTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGERWFW 366
Query: 297 --LLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFPI 332
LLD ++ G + D G Y+++Y PEL +
Sbjct: 367 DTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDSKGKYVRKYCPELNKLSD 426
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+YI++PW+AP + ++A + K+YP+ IV+
Sbjct: 427 KYIHKPWEAPNAILKEAGIELGKEYPKPIVD 457
>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
Length = 480
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 110/286 (38%), Gaps = 75/286 (26%)
Query: 141 DFGDPLIR-WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALK 197
D+ D ++ W GE+ A + +S +++ + S + DL G + S L+
Sbjct: 194 DWSDGWLKVWTPGESAAQTRARAFMSDDLDVYDS--------ARDLPGDDRTSRLSPHLR 245
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
+G +S R + D + G + +L+WRE+ Y + P N
Sbjct: 246 WGEISPYRLWQMAQD--GRLSAGSKARETWVK-ELVWREFSYHLLQEWPDLANENFNTKY 302
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFID---------AVMRQLRRLLDCTYCV---- 304
+ PW + ++ L AW+ GQTGYP +D M R++ ++ V
Sbjct: 303 DSFPWRSD-----DEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLVKHLL 357
Query: 305 -------------------------------------------CPVNFGRRLDPDGIYIK 321
P+ + D DG+YIK
Sbjct: 358 LDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFDKDGVYIK 417
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++VPEL + P +Y+ PW+APL V A + YP IV+H +A
Sbjct: 418 KWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEA 463
>gi|421494189|ref|ZP_15941540.1| hypothetical protein MU9_2710 [Morganella morganii subsp. morganii
KT]
gi|455737517|ref|YP_007503783.1| Deoxyribodipyrimidine photolyase [Morganella morganii subsp.
morganii KT]
gi|400191553|gb|EJO24698.1| hypothetical protein MU9_2710 [Morganella morganii subsp. morganii
KT]
gi|455419080|gb|AGG29410.1| Deoxyribodipyrimidine photolyase [Morganella morganii subsp.
morganii KT]
Length = 479
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 80/299 (26%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GE AL +L + ++ +K+ + P + G TS+ SA L G LS R+
Sbjct: 200 SGEEAALQRLADFCQKQAADYKT-----ERDFPAIDG--TSRISAYLATGILSPRQCLSR 252
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPES 266
L HF + + + +LIWRE++ A P D P+ +I W P++
Sbjct: 253 LRLHFPMVADEPESGAYTWLSELIWREFYLHQLAQYP--DISRHRPMQRWTESIIWSPDN 310
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------- 304
L AW+ G+TG+P +DA MRQL R++ ++ V
Sbjct: 311 -----SGLLAWQQGKTGFPLVDAAMRQLNETGWMHNRLRMITASFLVKDLLTDWRRGEHY 365
Query: 305 ----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQF 330
PV G+R DPDG +I+R++PEL +
Sbjct: 366 FMSQLIDGEFAANNGGWQWAASTGHDSVPYFRIFNPVTQGKRFDPDGSFIRRWLPELAEV 425
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYP 389
P +YI+ P + Q + DYP+ +V+H A + + + D P
Sbjct: 426 PAKYIHTPHEWAEKNQREI------DYPKPVVDHRMARIRAIDAYETARRTAAGGDDNP 478
>gi|449016513|dbj|BAM79915.1| probable DNA photolyase [Cyanidioschyzon merolae strain 10D]
Length = 725
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 83/232 (35%), Gaps = 61/232 (26%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
L G LS R + A + + F +LIWR+ Y P E
Sbjct: 401 LALGMLSAREVFHATRAASRRLAASKRSKTFE--RRLIWRDLAYWTLYMFP-----EAVT 453
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------- 294
+ + + + L AW+ G TGYP IDA MRQL
Sbjct: 454 TPIRSHYASQEWNEDPRLLAAWQRGSTGYPIIDAGMRQLWQTGWMPQNIRMAAASFLVEY 513
Query: 295 -------------RRLLDC--------------------TYCVCPVNFGRRLDPDGIYIK 321
R L+D + + P R DP G Y++
Sbjct: 514 LNIHWIHGLQWFHRTLIDLDIAINAMMWQNAGRTGLDMWNFVIHPETSARSSDPTGAYVR 573
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
+++PEL Q P YI+ PWKAP V A + YP+RI+ + A+ + Q
Sbjct: 574 KWLPELAQLPNAYIHAPWKAPESVLSSAGVQLGATYPQRIIADLGAARKQSQ 625
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 126/337 (37%), Gaps = 95/337 (28%)
Query: 119 QREVSLFQTVPKP---------EQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIE 169
Q V+ F++VP P E+ E D + + GE AL +L + +
Sbjct: 165 QLTVTDFRSVPAPKSRGAILSIEKQQLLFEHDAVEIAAHFPSGEVAALQRLRLFCRERAQ 224
Query: 170 SFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI 228
Y N+ P L G TSQ S L G LS R+ L + F
Sbjct: 225 D-----YQQNRDIPSLDG--TSQLSPYLAVGVLSPRQCLNRLLTENPHTFDSPDSGSFTW 277
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP---WLPESHPNK-EKYLNAWKNGQTGY 284
+LIWRE+++ + P+ +C + P W N + NAWKNG TGY
Sbjct: 278 LNELIWREFYHHLLVAFPH--------LCRHQPFIEWTKHIQWNSSDTDFNAWKNGLTGY 329
Query: 285 PFIDAVMRQLR---------RLLDCTYCV------------------------------- 304
P +DA MRQL R++ ++ V
Sbjct: 330 PIVDAAMRQLNTTGWMHNRLRMITASFLVKDLLIDWRRGEQYFIQQLIDGTLAANNGGWQ 389
Query: 305 ----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP--WKAPLGVQ 346
P G++ DPDG +++ ++PELR P QYI+ P W
Sbjct: 390 WSASTGIDASPWFRIFNPTTQGKKFDPDGKFVRHWLPELRTVPDQYIHTPHEWA------ 443
Query: 347 EKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
E I+ DYP IV+H QA L + + K + +
Sbjct: 444 ESTRVIL--DYPTPIVDHKQARLMTLEAFETGKNHSL 478
>gi|401676526|ref|ZP_10808510.1| deoxyribodipyrimidine photolyase [Enterobacter sp. SST3]
gi|400216210|gb|EJO47112.1| deoxyribodipyrimidine photolyase [Enterobacter sp. SST3]
Length = 470
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 119/298 (39%), Gaps = 86/298 (28%)
Query: 131 PEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPT 190
PE YP+ F + L E A+ KL + Q +G Y + + P + G +
Sbjct: 184 PELTFNYPQQAFDELLFP--ANEKAAIAKLRQFCKQ-----GAGEYDARRDFPAIEGT-S 235
Query: 191 SQSAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYD 249
SA+L G LS R+ + L + + G N +LIWRE++ + ++P
Sbjct: 236 RLSASLALGVLSPRQCLHRLLAEQPQAMDGGAGSVWLN---ELIWREFYRHLMTYHP--- 289
Query: 250 QMEKNPICLNIPWLPESHPNK----EKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
+C + P++P + K E L AW+ G+TGYP +DA MRQL R
Sbjct: 290 -----DLCKHRPFIPWTDNVKWQHDEARLQAWQKGETGYPIVDAAMRQLNETGWMHNRLR 344
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 345 MITASFLVKDLLIDWRIGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 404
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
G++ D +G +I+R++P LR P + I++PW +K + DYP IV+H QA
Sbjct: 405 GQKFDANGDFIRRWLPALRNVPAKAIHDPWT----WADKQG--VKLDYPRPIVDHKQA 456
>gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales
bacterium HTCC2083]
gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 511
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/472 (22%), Positives = 167/472 (35%), Gaps = 136/472 (28%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL---------------------KRE 51
+ F+ +CL DL+ L G L + G + +L R+
Sbjct: 53 WHFIHDCLVDLNIALTDLGQPLIVRVGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRD 112
Query: 52 LNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQP---CKTLLNFRDLSGLPPRPKEDIDFRH 108
L KLC +++ FPT R + + N R + +P +
Sbjct: 113 LKVGKLCLDRNISS----HEFPTNGVVRRLRSRDDWSKIRNVRMAENITAKPNNLVP--- 165
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYPEMD---FGDPLIRWL--GGETEALIKLNER 163
T G S+SL PE D FG+ I + GG T+A+ L
Sbjct: 166 -TLGCQSDSL-------------------PEKDDPMFGNTPIGKVQKGGRTQAVADLQSF 205
Query: 164 LSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWAL---HDHFNTIHE 219
L+ + YL + +P L+ S+ S L +G LSVR ++ H + +
Sbjct: 206 LNHRCQK-----YLHHISAPSLSDVHCSRLSTHLAWGALSVREVVHSVAKRHAQLTPLEK 260
Query: 220 ---GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
GR S F +L WR +F P + +P + + + E + A
Sbjct: 261 KSYGRNLSAFG--SRLAWRCHFVQKIEDQPEIETHCMHPAFEGL----REYEHNEAHYQA 314
Query: 277 WKNGQTGYPFIDAVMR---------------------------------QLRRL------ 297
W G TGYPF+DA MR L RL
Sbjct: 315 WATGNTGYPFVDACMRSLIAEGWITFRMRAMLVSFASYQLWLDWRVSGDHLARLFTDFEP 374
Query: 298 ------LDCTYCVCPVNFGRRLDP---------DGIYIKRYVPELRQFPIQYIYEPWKAP 342
L V +N R +P G +I+++VPEL P ++I+EPW
Sbjct: 375 GIHYSQLQMQSGVTGINTMRVYNPIKQSLEHDPTGAFIRKWVPELTNVPDEFIHEPWTWE 434
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLK--------KEKANCIINK 386
+ ++ + + +DYP IV H A+ KQ + ++ AN + K
Sbjct: 435 KTLLDQRDFELGQDYPAPIVEHSFAANAAKQKIAAVRKIPDFQQSANAVFQK 486
>gi|389848325|ref|YP_006350564.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|448618531|ref|ZP_21666768.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|388245631|gb|AFK20577.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|445746902|gb|ELZ98360.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
Length = 482
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/443 (22%), Positives = 152/443 (34%), Gaps = 99/443 (22%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H G R R++L+ LA+L +S G L + G P ++ + L + + D GV
Sbjct: 40 HAGSPRVRYMLDALAELRASYQSLGSDLLVAHGDPKAVVPAVAAALEADGVVWNTDYSGV 99
Query: 67 K----------------PYQSFPTGS-HPPRY------QPCKTLLNF----RDLSGLPPR 99
Y+S HPP P F RD P
Sbjct: 100 ARERDANVRSALDDASVSYESVHDAIFHPPGSITTNAGDPYSVYTYFWKKWRDRDKPDPY 159
Query: 100 PKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIK 159
P+ D D + + E+ +S ++ F +P + T+A K
Sbjct: 160 PEPDAD--SLVDAAVLEAASETLSDADFDVAVGDLPTISDLGFDEPSADIVSAGTDAARK 217
Query: 160 LNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
RL+ E Y ++ P + S LKFG + +R Y A + +
Sbjct: 218 ---RLADFCEDAIY-RYADDRDYP-ARNATSRLSTDLKFGTIGIREVYAATAEAREGVGG 272
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
+ S QL WRE++ + +NP +I W +S L AWK
Sbjct: 273 EQDESVETFQSQLAWREFYAHVLRYNPNVVTENYKEYEHDIQWRDDSDE-----LAAWKE 327
Query: 280 GQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------------- 305
G+TGYP +D A M R++ ++ +C
Sbjct: 328 GRTGYPIVDAGMRQLKKEAYMHNRVRMIVASFLTKDLLCNWRHGYDHFREYLSDHDTAND 387
Query: 306 ----------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P+ G R DPDG YIK+YVPEL I+E W
Sbjct: 388 NGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDGEYIKKYVPELEGVAASTIHE-WHE-- 444
Query: 344 GVQEKANCIISKDYPERIVNHVQ 366
+ E ++ +YP IV+H +
Sbjct: 445 -ISETERDRVAPNYPAPIVDHAE 466
>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
Length = 470
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 87/235 (37%), Gaps = 71/235 (30%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+FG +S+R+ + + +LIWR++++ + H P+
Sbjct: 240 SVHLRFGTISIRQL----------VRQALAHQADTWLSELIWRDFYFMILDHFPHVAGHA 289
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
P I W ++ + AW G TGYP +DA MRQL R++ ++
Sbjct: 290 FKPEYDAIQW-----ASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVVASFL 344
Query: 304 VCPVNFGRRL-----------------------------------------------DPD 316
+ RL D +
Sbjct: 345 TKDLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDAE 404
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
G +I+RYVPEL + +YI+ PWK QE +I +DYP IV+H A E
Sbjct: 405 GKFIRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDET 459
>gi|407796462|ref|ZP_11143416.1| deoxyribodipyrimidine photo-lyase [Salimicrobium sp. MJ3]
gi|407019247|gb|EKE31965.1| deoxyribodipyrimidine photo-lyase [Salimicrobium sp. MJ3]
Length = 472
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 106/277 (38%), Gaps = 70/277 (25%)
Query: 145 PLIRWLG-GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSV 203
PL +W GE A +L L + I Y ++ P G + S L+ G +S
Sbjct: 193 PLRKWEEVGEEAAEQRLTRFLDEPI-----YYYDEDRDIPSKDGT-SLMSRYLRTGAISP 246
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
R Y + T R + +L +R++++ + ++P D E +IPW
Sbjct: 247 RTVYHRVQQ--ETDGRKRQDGVESFIRELAFRDFYHMVYYNHPEADDQELTEKFRDIPWN 304
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMRQL----------------------------- 294
+ E+ + WK +TG+PFIDA M Q+
Sbjct: 305 ED-----EEIFDRWKEARTGFPFIDAAMAQMNESGWMHNRARMAVASFLTKDLLIDWRKG 359
Query: 295 -----RRLLDCTYC----------------------VCPVNFGRRLDPDGIYIKRYVPEL 327
R+L D PV R D G YIK ++P L
Sbjct: 360 ERYFNRKLADYEAASNIGGWQWAASTGTDAVPYFRVFNPVRQSERFDKHGDYIKEWLPAL 419
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
R P +YI+EP K Q++A C I +DYPE +V+H
Sbjct: 420 RNVPEKYIHEPHKMSEDEQKEAGCTIGEDYPEPMVDH 456
>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
Length = 477
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 61/210 (29%)
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
F + + ++ WRE+ Y + HNP P + W + +
Sbjct: 260 FAALRRSKSSGTSKFRAEIGWREFSYHLLFHNPDLSGRNFRPEFDAMSWR-----DDIRA 314
Query: 274 LNAWKNGQTGYPFIDAVMRQLRR----------------------------------LLD 299
L W+ G TGYP +DA MR+L R L+D
Sbjct: 315 LRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMIVASFLIKDLMIDWRHGEKWFWDTLVD 374
Query: 300 CTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P ++ G + DP G Y++++VPE+ P +YI+
Sbjct: 375 ADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEKFDPHGDYVRQHVPEISALPDRYIHR 434
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PW+AP V + ++ K YP IV+H A
Sbjct: 435 PWEAPAAVLKDKGIVLGKTYPNPIVDHGAA 464
>gi|358368155|dbj|GAA84772.1| DNA photolyase [Aspergillus kawachii IFO 4308]
Length = 664
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 30/170 (17%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDL--TGPPTSQSAALKFGCLSVRRFYW 208
GGE+ AL L L Q E F + + + SP T S L FG LSVR+F+
Sbjct: 253 GGESIALEMLRTYLQQN-EDFVA-TFEKPKTSPAAFHLQATTLLSPHLHFGSLSVRKFW- 309
Query: 209 ALHDHFNTIHE----GRPPSHF--NITGQLIWREYFYTM-SAHNPYYDQMEKNPICLNIP 261
HD +T+HE +P S+ N+ GQL++RE F+ +A P Y Q N I IP
Sbjct: 310 --HDVQDTLHERESAHKPTSNLPTNLPGQLLFREMFFAAQAALGPVYAQARGNKIARFIP 367
Query: 262 WLPESHPNKEK----------------YLNAWKNGQTGYPFIDAVMRQLR 295
W +S+ ++E + WK G+TG+P+IDA+MRQL+
Sbjct: 368 WHLQSNYDEETGLVDRTYTIDDEQAEVWFRRWKEGRTGFPWIDALMRQLK 417
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 303 CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
C PV FG++ DP+G++++ YVPEL + +YIYEPWKAP+ Q++ C ++ D
Sbjct: 503 CYSPVAFGKKWDPEGLFVRHYVPELEHYDKKYIYEPWKAPVEDQKRWECRVTGD 556
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHG--GQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
+ +G NR+RFLLEC +DL + + +L++V+ +P ++F KL + T L FE D
Sbjct: 51 VRVGPNRWRFLLECQSDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDT 110
Query: 64 EG 65
+G
Sbjct: 111 DG 112
>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
Length = 470
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 122/305 (40%), Gaps = 86/305 (28%)
Query: 132 EQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS 191
E+F KY W GE AL K+ S++I Y N+ P + G +
Sbjct: 193 EKFEKY-----------WFPGEDIALKKIKSFNSEKI-----NFYDKNRDFPSIEGT-SK 235
Query: 192 QSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
S L FG +S ++ Y D I + + ++ WRE+ Y + H P M
Sbjct: 236 LSPHLAFGEISPKKIY----DECTKI-KNKKIGVTKFLNEIGWREFAYHLINHFPI---M 287
Query: 252 EKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------- 296
K + N P S +K+L+ WK G TGYP +DA M+QL
Sbjct: 288 LKKNLRKNFDKFPWSE--NKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSF 345
Query: 297 -------------------LLD---------------CTYCVCP-------VNFGRRLDP 315
LLD C P + G + DP
Sbjct: 346 LVKHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFDP 405
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV---QASLENK 372
+G ++K ++P L++ P ++I++PW+ P + N + KDY E IV+H +A+L+
Sbjct: 406 NGEFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIVDHKIAREAALKAF 465
Query: 373 QYLKK 377
++ KK
Sbjct: 466 EFTKK 470
>gi|430003702|emb|CCF19491.1| Deoxyribodipyrimidine photo-lyase [Rhizobium sp.]
Length = 476
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/442 (20%), Positives = 157/442 (35%), Gaps = 101/442 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL----CF 59
G M G + +L L L + L GG L G ++ ++ ++ ++ +
Sbjct: 46 GGMPFGAAQAWWLHHSLLALRQALHDRGGDLLFFTGEAATVLVQVAQQTGANQIYLNRSY 105
Query: 60 EQD-----------CEGVKPYQSFPTGSHPPRY------QPCKTLLNFRDLSGLPPRPKE 102
E+D EG+ + H P + +P + F P+E
Sbjct: 106 ERDDQDRDIARRLKAEGIAVHAFHGQLLHDPSHIRTGGGKPFRVFTPFWKALQALGEPRE 165
Query: 103 DIDFRHVTFGTMSESLQREVSLFQTVP-KPEQFHKYPEMDFGDPLIRWLGGETEALIKLN 161
+ G S ++ + +P KP+ + E W GE A +L
Sbjct: 166 PLAAPDAMRGASSTPPSEQLEDWGLLPTKPDWAAGFGET--------WTPGEAGARFRLE 217
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ + + +KS + + + DLT + S L G ++ + + A + + G
Sbjct: 218 DFVEHGLREYKS---VRDFPARDLT---SHLSPHLAHGEVTPAQAWHAA----SGLDNGD 267
Query: 222 PPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
P + +L WR++ Y++ P N W + AW+ G
Sbjct: 268 PAQITHFRRELAWRDFNYSLLIEFPRLATDNWNTAFDGFAWSFDG-----ALYRAWRKGL 322
Query: 282 TGYPFIDAVMRQLR---------RLLDCTYCV---------------------------- 304
TGYP +DA MRQL R++ ++ +
Sbjct: 323 TGYPIVDAGMRQLWREGYMHNRVRMITASFLIKDLTIDWRKGEEWFRETLLDADPANNAA 382
Query: 305 -------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
P G + DPDG Y++RYVPEL +YI+ P++AP +
Sbjct: 383 SWQWVAGSGADASPFFRIFNPTLQGEKFDPDGDYVRRYVPELSHLDKKYIHRPFEAPDHI 442
Query: 346 QEKANCIISKDYPERIVNHVQA 367
+KA + + YP IV+H A
Sbjct: 443 LQKAGIRLGESYPRPIVDHGSA 464
>gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
Length = 472
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 80/237 (33%)
Query: 193 SAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
SA+L G LS R+ + L +H + G N +LIWRE++ + NP
Sbjct: 239 SASLATGGLSPRQCLHRLLAEHPQALDGGAGSVWLN---ELIWREFYRHLMTRNP----- 290
Query: 252 EKNPICLNIPWLPESHP----NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
+C + P++ + + + AW+ G+TGYP +DA MRQL R++
Sbjct: 291 ---ALCKHRPFIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMI 347
Query: 299 DCTYCV-----------------------------------------------CPVNFGR 311
++ V P G
Sbjct: 348 TASFLVKDLLIDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 407
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI-ISKDYPERIVNHVQA 367
+ D DG +I+R++PELR+ P + I+EPWK AN + ++ YP+ +V+H QA
Sbjct: 408 KFDRDGEFIRRWIPELREVPGKAIHEPWK-------WANSVGVTLSYPQPVVDHKQA 457
>gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
SRS30216]
gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
SRS30216]
Length = 450
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 91/234 (38%), Gaps = 77/234 (32%)
Query: 190 TSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
TSQ S ALK+G L R AL + E +L WR+++ + H P
Sbjct: 223 TSQLSHALKWGELHPRTLLAALRGQSSKGAE-------TYATELCWRDFYADVLWHRPDS 275
Query: 249 DQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLD 299
+ P L + P ++ AW G+TG+P +DA MRQ+R R++
Sbjct: 276 AREYYKPQLAG---LRYAEPGEQ--FRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMIT 330
Query: 300 CTYCV-----------------------------------------------CPVNFGRR 312
++ V PV G+R
Sbjct: 331 ASFLVKDLHVEWQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQR 390
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
DPDG Y++R+VPELR P + ++ PW+A G + YPERIV+H
Sbjct: 391 FDPDGDYVRRFVPELRHLPGKSVHTPWEAADG--------YAHGYPERIVDHAH 436
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 51/318 (16%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT G R +F+++ + DL + LK+ GG L +V+G P + +L +E + ++ ++
Sbjct: 49 GTKKTGKLRAQFIIDSVTDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREV 108
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDF--RHV--TFGTMSESLQ 119
+ S K+ +N + G KED+ F + + F + ++
Sbjct: 109 ASEE-----TDISSAVEDALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVE 163
Query: 120 REVSL---FQT-----VPKPEQFHKYPEM-DFG-------DPLIRWLGGETEALIKLNER 163
RE + F+T VP + P + D G D I+ GGE+ L +LNE
Sbjct: 164 REGEIRDPFETPGQISVPDSLASSEVPALEDLGFERSEQLDASIK--GGESSGLNRLNEY 221
Query: 164 LSQE--IESFKSGVYLSNQVSPDLTG--PPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
L ++ ++ +K+ L LTG + S L GC+S R+ YW L + HE
Sbjct: 222 LWEKDLLKEYKAKRNL-------LTGFNNNSQLSPWLSLGCISPRKVYWELKRY---EHE 271
Query: 220 GRPPSHFNIT-GQLIWREYF-YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ N+ +L++R++F + H+ Y P+ LN ++ W
Sbjct: 272 KGGTDNINLLFNELLFRDFFRFMFKKHSTAYFVDIAQPMSLN--------AEQQVLFEKW 323
Query: 278 KNGQTGYPFIDAVMRQLR 295
KNG+TG +DA M +L+
Sbjct: 324 KNGETGIDLVDANMLELK 341
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 103/452 (22%), Positives = 161/452 (35%), Gaps = 92/452 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +L L LD LK G L + +G +I +L ++ + F D
Sbjct: 49 GNRSLGAATQWWLASSLRALDTDLKKRGQHLVLRKGDARAILPRLAKDTGALAV-FWIDS 107
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPP--RPKEDIDFRHVT-FGTMSESLQ- 119
E + +T ++ DL PP R KE R T F S
Sbjct: 108 EIPAEAARAQDTAEALHEIGVETHISPSDLLASPPSIRNKEGNGLRVFTPFWKRVRSQGD 167
Query: 120 --REVSLFQTVPKPEQFHKYPEM----------DFGDPLIR-WLGGETEALIKLNERLSQ 166
R + + +P P K + D+ L W GE+ A +LN+ L +
Sbjct: 168 PPRPLPAVRKLPPPVASVKSENLKDWKLEPTHPDWAGGLRETWTPGESGAHRRLNDFLDE 227
Query: 167 EIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF 226
I+ + G + P L+FG +S R+ + A E P
Sbjct: 228 AIKGYAIGRDFPGRDHASHLSP------HLRFGEISPRQVFHAA----RFAAEQHPALSR 277
Query: 227 NIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
++ +L WRE+ + +P + + PW ++ K L AW+ G+TG
Sbjct: 278 DVEKFLSELGWREFCRHLLFDHPDLHRRNLQSSFDDFPWRRDA-----KALRAWQQGRTG 332
Query: 284 YPFIDAVMRQLR---------RLLDCTYCV------------------------------ 304
YP +DA MR+L R++ ++ V
Sbjct: 333 YPIVDAGMRELWHTGTMQNRVRMVTASFLVKHLLLDWREGEAWFWDTLVDADPGSNPGNW 392
Query: 305 -----C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
C P+ G + DPDG Y+ ++VPEL + P I++PW A
Sbjct: 393 QWVAGCGADAAPYFRIFNPILQGEKFDPDGAYVAKWVPELAKLPPALIHKPWDATPLELA 452
Query: 348 KANCIISKDYPERIVNHVQASLENKQYLKKEK 379
A + K YPE IV+H A +K K
Sbjct: 453 AAGVTLGKTYPEPIVDHKAARERALAAYRKTK 484
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 73/283 (25%)
Query: 141 DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGC 200
DF D W GE A KL++ + ++ ++ G + + L +S AA +
Sbjct: 199 DFSDI---WTPGENGAKDKLDDFIDGALKGYEEGRDFPAKPATSLL---SSHLAAGEISP 252
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
+V L H + R +++WRE+ Y + H P D+ N
Sbjct: 253 AAVWHATKGLSRHIASNDISR------FRKEIVWREFCYHLLFHFPELDEKNWNDSFDAF 306
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV------- 304
PW + E AW G TGYP +DA +M R++ ++ +
Sbjct: 307 PWR-----DDETSFKAWTRGMTGYPIVDAGMRQLWQHGIMHNRVRMIVASFLIKHLLIDW 361
Query: 305 ----------------------------------------CPVNFGRRLDPDGIYIKRYV 324
P+ G + D DG Y++R+V
Sbjct: 362 RKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDYVRRFV 421
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
PEL + +YI++P++AP V +KA + K YP IV+H +A
Sbjct: 422 PELEKLERKYIHKPFEAPKDVLKKAGVELGKTYPLPIVDHGKA 464
>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
Length = 478
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 112/298 (37%), Gaps = 88/298 (29%)
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYW 208
+ GE AL KL + ++ Y ++ P + G TSQ S L G LS R+
Sbjct: 202 IAGEQAALAKLRLFCRERVQD-----YQRDRDIPSIDG--TSQLSPYLAIGTLSPRQCVN 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREY-------FYTMSAHNPYYDQMEKNPICLNIP 261
L I + F+ +L+WRE+ F + H P+ + + +I
Sbjct: 255 RLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIEWTQ------HIQ 308
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------- 295
W P+ E AWK GQTGYP +DA MRQL
Sbjct: 309 WNPD-----EDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDWR 363
Query: 296 --------RLLDCTYCV----------------------CPVNFGRRLDPDGIYIKRYVP 325
+L+D T P G++ DP G +I +++P
Sbjct: 364 KGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWLP 423
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
ELR P Q+I+EP Q ++ +YP IV+H QA L + + K +
Sbjct: 424 ELRNVPEQFIHEPHTWAESNQ------VTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
PV G + DPDG ++K+Y+P LR+ P+QYI++PW P +QE+A C I DYP V+H
Sbjct: 404 PVTQGEKFDPDGAFVKKYLPVLREVPLQYIHKPWDMPEQIQEQAGCKIGFDYPIPCVDHA 463
Query: 366 Q 366
Q
Sbjct: 464 Q 464
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 118/309 (38%), Gaps = 39/309 (12%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD----C 63
+G R +A L L GG+L I G+P + +L +E KL F +D
Sbjct: 45 VGDKRLYAHFAAIAALGDALAQLGGRLLIRHGNPQQVLCQLAQETGADKLLFNRDYAPEA 104
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
S S CK L+ P E + + + + +
Sbjct: 105 RKRDELVSEVLSSQGVVVHTCKDLILHE--------PGEIMTKQRTPYAVFTPYRR---- 152
Query: 124 LFQTVPKPEQFHKYPEMDFGD----------PLIRWLG-----GETEALIKLNERLSQE- 167
++QT+PK F + + D P + G G + + ER +Q+
Sbjct: 153 VWQTLPKDRPFPQPTRWNLFDRLKELASEPVPTVEAFGRKRPIGTEWEMEQFGERAAQKR 212
Query: 168 IESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
++ F +G + + D+ G + S AL G LS+R Y ++ + + S
Sbjct: 213 LQQFLNGDIYTYKEKRDMPGVNATSRLSFALNTGTLSIRTVYHSVQEVLARARGEQVTSI 272
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
+LIWRE++ + +P+ P + W N++ W +G+TGYP
Sbjct: 273 EAFLTELIWREFYQQVLYFHPHTTDHAYLPQFETVAW-----ENRKDLFTRWCHGETGYP 327
Query: 286 FIDAVMRQL 294
+DA M+QL
Sbjct: 328 IVDAAMKQL 336
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 163/448 (36%), Gaps = 113/448 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60
FP T G +R +FLLE + DL LK G L + +G P + + L ++L N + +
Sbjct: 53 FPKT---GPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLH 109
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTL-LNFRDLSGLPPRPKEDIDFRHVT-----FGTM 114
++ + T Q C L + ++ G +ED+ FRH++ +
Sbjct: 110 EEATKEE------TDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQF 163
Query: 115 SESLQREVSLFQTVPKPEQFHKYP------------EMDFGDPLIR------WLGGETEA 156
++++ + + T P++ P + D DPL GGE++A
Sbjct: 164 RKAVETQGKVRPTFQMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQA 223
Query: 157 LIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHD 212
L +L + + S+K L G S A L GC+S R Y +
Sbjct: 224 LQRLEHYFWETNLVASYKD-------TRNGLIGLDYSTKFAPWLALGCVSPRYIY----E 272
Query: 213 HFNTIHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ R S + + +L+WR+YF ++ + +IPW
Sbjct: 273 QIGKYEKERTANQSTYWVIFELLWRDYFRFVALKYGRRIFFLRGLQDKDIPW-----KRD 327
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR--------------------------------RLL 298
K +AWK G+TG PF+DA MR+L L
Sbjct: 328 PKLFDAWKEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYL 387
Query: 299 DCTYCVCPVNFGRRL------------------------DPDGIYIKRYVPELRQFPIQY 334
Y VC N+G L D G YI+ +VPEL+Q
Sbjct: 388 LVDYDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGD 446
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIV 362
+ PW AN + + YP IV
Sbjct: 447 AHTPWALSNASLAHANLSLGETYPYPIV 474
>gi|390449652|ref|ZP_10235256.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
gi|389663847|gb|EIM75362.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
Length = 483
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 61/193 (31%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
++ WRE+ + + HNP N PW + L W+ G+TGYP +DA
Sbjct: 281 EIGWREFCWHLLFHNPKLATENFNRNFDAFPWR-----GDDTALRHWQRGETGYPVVDAA 335
Query: 291 MRQLRR----------------------------------LLDCTYCVCPVNF------- 309
MRQL + L+D P N+
Sbjct: 336 MRQLWQTGWMHNRARMVVASFLVKHLGIHWREGEAWFWDTLVDADPASNPANWQWVAGSG 395
Query: 310 ---------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
G++ DP G Y++RYVPEL P +++++PWKAP KA +
Sbjct: 396 ADAAPFFRIFNPVLQGQKFDPVGDYVRRYVPELDALPDKHLHQPWKAPEEACGKAGVKLG 455
Query: 355 KDYPERIVNHVQA 367
YP +V+H A
Sbjct: 456 DTYPRPLVDHRAA 468
>gi|448637488|ref|ZP_21675726.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
gi|445764335|gb|EMA15490.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
Length = 534
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 103/265 (38%), Gaps = 74/265 (27%)
Query: 162 ERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
ERLS E Y N +P D + S L FGCLSVR+ + +H +G
Sbjct: 218 ERLSAFAEQIDD--YPGNISAPTDARDGTSGLSPYLAFGCLSVRQVIQYIDEH---APDG 272
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY----LNA 276
R F +L W +++ P + + NP+ N E+Y + A
Sbjct: 273 RGKEMF--VSRLFWNKHYEQKLEDWPGWLETAVNPVLEGF--------NAEQYDPDLVAA 322
Query: 277 WKNGQTGYPFIDAVMRQLRR----------------------------------LLDCTY 302
WK+GQTG+P +DA MR LR+ L+D +
Sbjct: 323 WKHGQTGFPMVDASMRCLRQTGWLNFRMRSMCASVYYHLLQQPWRIGADWFYHHLIDASA 382
Query: 303 CV--------C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
+ C P R DPDG +I+++VPEL P +Y+ P + P
Sbjct: 383 AINYTQWQSQCGLVGKPALRLYNPRKQVRDQDPDGEFIRQWVPELESLPDEYLDRPEQTP 442
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
+ VQ I DYP +V++ A
Sbjct: 443 VHVQASCGVDIGDDYPHPVVDYDAA 467
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/437 (21%), Positives = 155/437 (35%), Gaps = 119/437 (27%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L L L L++ G +L + G P + ++ E ++ E V P
Sbjct: 64 WLHYSLESLSEGLRALGSRLILRAGRPHEVVPQVAAETGAARVLLN---ETVVP------ 114
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMS---------ESLQREVSLF 125
+H + L + + + RP + + GT ++L++ V
Sbjct: 115 -THRESARRMAAALEDQGVEAVTLRPDALVWPSELKTGTGGHYKVYTPFWKALKQAVGDP 173
Query: 126 QTVPKPE---------------QFHKYPEM-DFGDPLIR-WLGGETEALIKLNERLSQEI 168
+T+P PE +F P M D+ L W GE A L+ + +
Sbjct: 174 ETLPPPERLPAPDHWPDSTPLAEFRLTPAMPDWAGGLRESWTPGEDGAWACLHTFIDGAL 233
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP--SHF 226
+++G L +V P L+FG +S R+ + N + P S
Sbjct: 234 ARYRTGRNLPAEVGTSRLSP------HLRFGEISARQVW-------NAVRSMAEPNASTD 280
Query: 227 NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
++ WRE+ HNP + P PW + + AW+ G TGYP
Sbjct: 281 AYLSEIGWREFNRYQLFHNPDLHRTPLRPEFRLFPWR-----EDDADIRAWRKGLTGYPI 335
Query: 287 IDAVMRQLRR----------------------------------LLDCTYCVCPVNF--- 309
+DA MR+L L+D + P N+
Sbjct: 336 VDAGMRELWETGWMHNRVRMIVGSFLVKDLLAPWQVGEAWFWDTLVDADWGSNPGNWQWV 395
Query: 310 -------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
G + DP G Y++R+VPELR+ + I++PW+APL +
Sbjct: 396 AGCGADAAPFFRVFNPVLQGEKFDPRGDYVRRWVPELREMDRRVIHKPWQAPLELARTG- 454
Query: 351 CIISKDYPERIVNHVQA 367
YPE +V+H A
Sbjct: 455 ------YPEPMVDHSHA 465
>gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
Length = 480
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 111/294 (37%), Gaps = 82/294 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GE AL +L ++ S K G Y +++ P + G TSQ S L G LS R+ +
Sbjct: 206 AGEKSALTRL-----RQFCSLKVGDYQNDRDIPSIDG--TSQLSPYLAVGVLSPRQCFNR 258
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP---WLPES 266
L + + F +L+WRE++ + P +C + P W
Sbjct: 259 LQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPR--------LCRHQPFIQWTQHI 310
Query: 267 HPNKEKY-LNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------ 304
H N AWK GQTGYP +DA MRQL R++ ++ V
Sbjct: 311 HWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDWRKGEK 370
Query: 305 -----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
P G++ D G +I+ ++PEL+Q
Sbjct: 371 YFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWLPELQQ 430
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
P +YI+ P + + N YPE IV+H QA L + K N +
Sbjct: 431 VPDKYIHTPHEWAVISNTALN------YPEPIVDHKQARLATLAAFEAGKRNSL 478
>gi|397602022|gb|EJK58052.1| hypothetical protein THAOC_21847 [Thalassiosira oceanica]
Length = 815
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 106/459 (23%), Positives = 169/459 (36%), Gaps = 105/459 (22%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
L + L +LD +L+SHG +L QG S +LC E V Y T
Sbjct: 311 ILKDALRNLDEKLRSHGLELTCRQGDDSSEV--------LRQLCEECGSSAVY-YNVEHT 361
Query: 75 GSHPPRYQPCKTLLNFRDLSGL---------PPRPKEDIDFRHVTFGTMSESLQREVSLF 125
R + LL D+ + P P+ F +GT+ L+
Sbjct: 362 PESGVREAKYRRLLGEIDVETVECQSSLLYDPTSPQLGTGFHGGHWGTLMPFLKGCKKQL 421
Query: 126 QTVPKPEQ-FHKYPEMDFGDPLIRW-----LGGETEALIKLNERLSQEI----------- 168
KP Q F + ++ + W + G A+I+ ERL +
Sbjct: 422 GEPRKPVQRFETFAMLEAMAGPVTWPSSSSIDGLDLAVIEGEERLLERFPMSEDAAHSNL 481
Query: 169 -ESFKSGV--YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
+ FK G Y S++ D+ + SA L+ G LS Y+ E P
Sbjct: 482 EQFFKVGFGRYESDRSRADMEWSTSKLSAHLRVGTLSPNVLYYK-----TEASELDYPQR 536
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN---IPWLPESHPNKEKYLNAWKNGQT 282
+ +L WR+ Y H + M I L+ W ++ ++L AWK G+T
Sbjct: 537 KTFSRRLFWRDLAYF---HLQSFPGMRWESIRLHYGQTEWCNGEEGDR-RFL-AWKRGKT 591
Query: 283 GYPFIDAVMRQLRR----------------------------------LLDCTYCVCPV- 307
G+P +DA MR+L + L D + P+
Sbjct: 592 GFPLVDAGMRELYKTGWMTQSIRMVVASFLTEYLRVDWRMGAEWFHYTLADADSAINPMM 651
Query: 308 --NFGRR---------------LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKAN 350
N GR D G Y +R+VPEL + P +++PW+ P V +
Sbjct: 652 WQNAGRSGIDQWNFVMSPVAASQDASGEYTRRWVPELAKLPRGTLHKPWETPAQVLNECG 711
Query: 351 CIISKDYPERIVNHVQA--SLENKQYLKKEKANCIINKD 387
++ +DYP RIV ++A +L ++ L+ + N N +
Sbjct: 712 IVLGRDYPHRIVTDLKAERALSDEAVLEMRRKNQQFNNE 750
>gi|338986465|ref|ZP_08633502.1| Deoxyribodipyrimidine photo-lyase [Acidiphilium sp. PM]
gi|338206606|gb|EGO94705.1| Deoxyribodipyrimidine photo-lyase [Acidiphilium sp. PM]
Length = 263
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 61/200 (30%)
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
GR + +LIWRE+ + H P +PW ES + L AW++
Sbjct: 49 GRDAARQTFLKELIWREFAAYLLWHTPDLATRPMKAQFAAMPWR-ESAAD----LAAWQH 103
Query: 280 GQTGYPFIDAVMRQLR---------RLLDCTYCV----------------C--------- 305
G+TG P +DA MRQL R++ ++ V C
Sbjct: 104 GRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLVKHLLLPWQAGERWFHDCLVDADAASN 163
Query: 306 ----------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
PV GR+ DPDG Y++R+VPE+ P +Y++ PW+AP
Sbjct: 164 AASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDGAYVRRFVPEIANLPDKYLHAPWEAPE 223
Query: 344 GVQEKANCIISKDYPERIVN 363
V A + YP +V+
Sbjct: 224 IVLRGAGVRLGASYPRPVVD 243
>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
Length = 488
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 172/451 (38%), Gaps = 110/451 (24%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTK---LCFE 60
G+ G +R RF LE + +L R L++ G L + G P + K + K +C E
Sbjct: 50 GSPKCGGHRGRFQLESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAKNEEVCSE 109
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPC--KTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESL 118
+ K + + + R TL + DL P + D V F +
Sbjct: 110 ELRVDAKVKSAVKSAGNLNRLDKIWGSTLYHKDDL----PFRSDASDLPDV-FTPFRNKV 164
Query: 119 QREVSLFQTVPKP------------EQFHKYP---EMDFG--------------DPLIRW 149
+ + + VP P E F P ++ F D ++ +
Sbjct: 165 ESKSEPREPVPPPAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPF 224
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAA-LKFGCLSVRRFYW 208
GGE+ AL ++ + ES K Y + + L G +S+ A L GC+S R+
Sbjct: 225 EGGESAALARVRYYV---WESEKIATYFETR-NGMLGGDYSSKLAPWLAHGCVSPRQVVA 280
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYF--YTMSAHNP-YYDQMEKNPICLNIPWLPE 265
+ + E + S + + +LIWR++F + + N ++ + +
Sbjct: 281 EVRKFESQRVENK--STYWLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGG 338
Query: 266 SHPNKE--KYLNAWKNGQTGYPFIDAVMRQL----------------------------- 294
+ P ++ L AWK G+TGYP +DA MR+L
Sbjct: 339 AGPWRDDPAALAAWKEGKTGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLG 398
Query: 295 -----RRLLDCTYCVCPVNFG----------------------RRLDPDGIYIKRYVPEL 327
+LLD C N+G + DP+G YIK +VPEL
Sbjct: 399 AEWFENKLLDYD---CSANWGNWVAAAGMTGGRVNKFNIAKQTKDYDPEGEYIKYWVPEL 455
Query: 328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
R+ P +YI EP + P V + A C+I DYP
Sbjct: 456 RKVPAKYIAEPRQMPGDVAQSAGCVIGVDYP 486
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 129/322 (40%), Gaps = 56/322 (17%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +R RFLLE LA LD L+ HG +L +VQG + L L+ ++
Sbjct: 46 GPRRLGVHRARFLLESLAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVL---TL 102
Query: 64 EGVKPYQ--SFPTGSH----PPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSES 117
E V P++ H P P +L +L P P + + F +
Sbjct: 103 EEVAPFELDEMRRVRHALGVPLTEWPGNSLFREEEL----PVPLQALP---SVFNRFRDL 155
Query: 118 LQREVSLFQTVPKPEQFHKYP--------------EMDFGDPL------IRWLGGETEAL 157
++ V +FQ P P P + G+PL + GGE AL
Sbjct: 156 VEARVHVFQPNPTPHALPPLPTGAAALLTPLPSLSRLGLGEPLGVPATAFPFSGGEPAAL 215
Query: 158 IKLNERL--SQEIESF--KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
+L + L S+ I + +S + ++ S L S L G LS RR LH
Sbjct: 216 ARLRDYLWESRSIRDYRIRSDGMIGSEYSSKL-------SPWLANGSLSPRRVAAELH-R 267
Query: 214 FNTIHEGRPPSHFNITGQLIWREYF-YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
+ H GR S + QL+WREYF +TM + + P N ++
Sbjct: 268 LESQH-GRDDSTQQLWHQLLWREYFRWTMRRLGDALFRADGLKATARAP------RNLDE 320
Query: 273 YLNAWKNGQTGYPFIDAVMRQL 294
+ W G+TG P +DA MR+L
Sbjct: 321 RFHGWCIGRTGMPLVDANMREL 342
>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS 278]
gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 278]
Length = 415
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 111/280 (39%), Gaps = 78/280 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE A +RL +ES SG Y +++ PD+ TS+ S L+FG ++ R+ +
Sbjct: 138 WQAGERAA----QQRLRSFLESTVSG-YAADRDRPDIDA--TSRLSPHLRFGEITPRQIW 190
Query: 208 WALHDHFNTIHEGRPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
A E RP I ++ WRE+ + +NP P PW+
Sbjct: 191 HAAR----FAAEERPAQAKGIDKFLSEIGWREFSRHLLYNNPDLASRNLQPSFDPFPWV- 245
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------ 294
+ L AW+ G+TGYP +DA +R+L
Sbjct: 246 ----QDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLIDWRQGE 301
Query: 295 ----RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELR 328
L+D P ++ G + D +G Y++R+VPEL
Sbjct: 302 QWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRRWVPELA 361
Query: 329 QFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVNHVQA 367
+ P I++PW A PL + E A + + YP I++H Q
Sbjct: 362 RLPAGVIHQPWAAKPLELAE-AGVTLGRSYPTPIIDHKQG 400
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 134/332 (40%), Gaps = 47/332 (14%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT G R FLLE + L + + GG + +VQG P + + L + + ++ ++
Sbjct: 49 GTAKTGIVRASFLLESILSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHRE- 107
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDF--RHV--TFGTMSESLQ 119
V P ++ +G K +N + G KED+ F + + F + +
Sbjct: 108 --VGPEETEISGHVEDLLWTLK--INLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTE 163
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKLN-----------ERLSQE 167
R+ + PE D+G P ++ LG ET A + + L+Q
Sbjct: 164 RDAIVKACFLTPEHIDFVENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQL 223
Query: 168 IESFKSGVYLSNQV--SPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
+E+ + +YL +P+ G + SA L GCLS R YW + + G +
Sbjct: 224 LEA-GADIYLKQNTKHTPEKPGFSSRLSAWLTIGCLSPRMVYWKVKEAEGVF--GLNANF 280
Query: 226 FNITGQLIWREYF-YTMSAHNPYYDQ---MEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281
I L+WR+YF + H + Q +EK+ + ++ + L WK G
Sbjct: 281 SQIFLGLLWRDYFRFMFKKHGIAFLQETDLEKD--------IMQAIERVDPALEKWKTGC 332
Query: 282 TGYPFIDAVMRQLR---------RLLDCTYCV 304
T +P +D M L RLL TY V
Sbjct: 333 TAHPVVDKYMYDLNATGFIPHSGRLLVATYLV 364
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 112/279 (40%), Gaps = 82/279 (29%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE+ A +L++ L I+ Y + + PD G TS+ S L+FG +S R+ +
Sbjct: 212 WTPGESAAQTRLHDFLETGIKG-----YATLRDRPDRDG--TSRLSPHLRFGEISPRQVW 264
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLI----WREYFYTMSAHNPYYDQMEKNPICL--NIP 261
H + P + G+ + WRE+ + P D EKN P
Sbjct: 265 -----HAANFAAAQKPDIASDVGKFLSELGWREFSRHLLFDLP--DLAEKNLQSSFDAFP 317
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------- 304
W ++ K L AW+ G+TGYP +DA MR+L R++ ++ V
Sbjct: 318 WRRDA-----KALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWR 372
Query: 305 ---------------------------------------CPVNFGRRLDPDGIYIKRYVP 325
PV G + DPDG Y+ R+VP
Sbjct: 373 HGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDPDGAYVSRWVP 432
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
EL + + I++PW+A A + ++YPE +V+H
Sbjct: 433 ELARLSAKLIHQPWEATPMELAAAGVTLGENYPEPMVDH 471
>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 476
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 104/257 (40%), Gaps = 76/257 (29%)
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-FYWALHDHFNTIHEGRPPS 224
+E E K +Y N+ P + + S L G LS+R+ ++ + GR
Sbjct: 217 REFEEKKVKLYAENRDYPSVDAT-SILSPYLAVGILSIRQCMARVMYQQQLPLSGGREVW 275
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+LIWRE++ ++ P + E NP ++ W N + +L AWK+G+TG
Sbjct: 276 Q----SELIWREFYQHLAYFEPKLSKGESFNPWGEHLRW-----ENSQVFLEAWKSGKTG 326
Query: 284 YPFIDAVMRQLR----------------------------------RLLD---------- 299
YP +DA M+QL +L+D
Sbjct: 327 YPIVDAAMKQLNETGWMHNRLRMIVASFLIKDLHIDWRVGEQYFMSKLVDGDYPANNGGW 386
Query: 300 --CTYCVC----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
C+ C P+ G R DPDG +I R++P+L + P +++++PWK Q
Sbjct: 387 QWCSSTGCDGQPYFRIFNPITQGERFDPDGRFIIRWLPQLAEVPKKFLHQPWKWSRASQL 446
Query: 348 KANCIISKDYPERIVNH 364
K YP IV+H
Sbjct: 447 K--------YPAPIVDH 455
>gi|417957982|ref|ZP_12600899.1| hypothetical protein l13_13110 [Neisseria weaveri ATCC 51223]
gi|343967374|gb|EGV35619.1| hypothetical protein l13_13110 [Neisseria weaveri ATCC 51223]
Length = 468
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 78/233 (33%)
Query: 190 TSQSAA-LKFGCLSVRRFYWALHDHFNTI-HEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
TSQ AA L G LS R +L H +I +EG +LIWRE++ + HNP
Sbjct: 242 TSQLAAYLNQGMLSAR----SLAHHVASISNEGAE----KWLEELIWREFYQQILYHNPD 293
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
P ++ W N+E + WKNG+TGYP +DA MRQL+ R++
Sbjct: 294 VVHQSFRPEYHHLHW-----ENREDWFERWKNGETGYPIVDAAMRQLKACGMMHNRLRMI 348
Query: 299 DCTYCV-------------------------------------C----------PVNFGR 311
+ V C PV +
Sbjct: 349 TAGFLVKDLLIDWRLGEAWFAEQLLDYDLAANNGNWQWSAGTGCDAQPYFRIFNPVLQSQ 408
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+ DPDG+YI+R++PEL I+ PW A + I + YP +V+H
Sbjct: 409 KFDPDGLYIRRHLPELAHLGKDVIHAPWLA-------KDSIDTHGYPAPMVDH 454
>gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 515
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 107/294 (36%), Gaps = 69/294 (23%)
Query: 144 DPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLS 202
D R GGET AL L L F G+ SP+ + S+ S L +G +S
Sbjct: 206 DRTERQQGGETTALEILRSFLYHRGVGFSKGI-----SSPNSSWTSCSRLSPYLTWGQIS 260
Query: 203 VRRFYWALHDHFNTIHEGRPPSH-------FNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
+R AL + + + S + ++ WR +F P +Q + N
Sbjct: 261 LRHVVQALQERQAQLKTQKCRSDDRWLRSFTAFSSRVHWRSHFIQKLESEPEMEQRDVNA 320
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR----------QLRRLL------- 298
P + E Y AW G TGYP +DA MR ++R +L
Sbjct: 321 AFQ--PLRRQPGDWNECYYQAWSTGNTGYPMMDACMRCLHRHGWVNFRMRAMLVSFASYN 378
Query: 299 -------------------------------------DCTYCVCPVNFGRRLDPDGIYIK 321
+ C G+ DP GI+++
Sbjct: 379 LWLDWHRFAPHLARVFLDYEPGIHYPQIQMQSGTTGINALRCYSVTKQGKEHDPRGIFVR 438
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
+Y+PEL+ P YI+EPWK +Q K I + YP IVN + + K+ +
Sbjct: 439 KYIPELQSVPNDYIHEPWKMSKSMQAKCGVHIGEHYPAPIVNEQETAKSAKERI 492
>gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
Length = 514
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/487 (21%), Positives = 165/487 (33%), Gaps = 135/487 (27%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H R R LL+ LA L + G L + +G+P ++ +L L+ ++ + +D G+
Sbjct: 45 HASDVRVRRLLDGLAALRDDYRDRGSDLLVARGAPETVLPELAAALDAERVVWNRDYSGL 104
Query: 67 KPY---------------------------QSFPTGSHPPRYQPCKTLLNFRDLSGLPPR 99
+S T + P + D PP
Sbjct: 105 ARERDAGVRTALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPA 164
Query: 100 PKED----IDFRHVT--FGTMSESLQREVSLFQTV-----PKPEQFH-KYPEMDFGDPLI 147
P D +D +T GT + + V P P PE D G
Sbjct: 165 PTPDAGDLVDAGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVG---- 220
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGV-YLSNQVSPDLTGPPTSQSAALKFGCLSVRRF 206
G A +L++ LS+ + S+ + Y + + + + SA LK+G + VR
Sbjct: 221 --PAGTEAARDRLDDFLSEAVFSYDAERDYPAREAT-------SRMSAFLKYGEIGVREA 271
Query: 207 YWALHD-----------------HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYD 249
Y A D H + EG + QL WRE++ + HNP
Sbjct: 272 YEATKDAMAMAEEKTGERDEGGDHEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVV 331
Query: 250 QMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID---------AVMRQLRRLLDC 300
I W P++ + AWK G+TGYP +D A M R++
Sbjct: 332 TENYKEYEEGIAW--RDDPDE---IAAWKRGETGYPIVDAGMRQLREEAFMHNRVRMIVA 386
Query: 301 TYCV-----------------------------------------------CPVNFGRRL 313
++ P+ G R
Sbjct: 387 SFLTKDLLADWRHGYDYFRETLADHDTANDSGGWQWAASTGTDAQPYFRIFNPMTQGERY 446
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
DPD YIKRYVPELR I+E W L ++AN + +YP IV+H + E
Sbjct: 447 DPDAEYIKRYVPELRGLDADLIHE-WH-ELSPTQRANA--APNYPAPIVDHSERREEALA 502
Query: 374 YLKKEKA 380
K+ +
Sbjct: 503 MYKRARG 509
>gi|449017555|dbj|BAM80957.1| probable cryptochrome [Cyanidioschyzon merolae strain 10D]
Length = 1225
Score = 72.0 bits (175), Expect = 6e-10, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 87/233 (37%), Gaps = 67/233 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF-----NITGQLIWREYFYTMSAHNPY 247
S L+FG LS RR Y A+ ++ + P + L REY Y M + P
Sbjct: 290 SPYLRFGELSPRRLYHAVR---ASVLQSEPSDAIIRAARTLLRNLCLREYAYHMLFYRP- 345
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR----------- 296
+ P+ P + + + L W +G+TGYP +DA MR+L
Sbjct: 346 --SILDRPLVPEFDHFPCTKEDVGRLLEVWLSGRTGYPLVDAAMRELHHTGWLHSNLRFL 403
Query: 297 --------------------------------------LLDCTYCVCPVN-------FGR 311
+ C Y V P+N G
Sbjct: 404 VASFFTKYLLLPWQIGARCLFKLFIDGDLASNAICWQWVTGCNYDVFPLNCLVNPVVMGM 463
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
R+DP+G Y++ + PEL+Q P YI+ WK P + +A + YP +V +
Sbjct: 464 RVDPEGEYVRTWCPELQQIPSSYIHAVWKCPPTILHQARVELGVTYPRPVVEN 516
>gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 534
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 103/265 (38%), Gaps = 74/265 (27%)
Query: 162 ERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
ERLS E Y N +P D + S L FGCLSVR+ + +H +G
Sbjct: 218 ERLSAFAERIDD--YPGNISAPVDARDGTSGLSPYLAFGCLSVRQVIQYIDEH---APDG 272
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY----LNA 276
R F +L W +++ P + + NP+ N E+Y + A
Sbjct: 273 RGKEMF--VSRLFWNKHYEQKLEDWPGWLETAVNPVLEGF--------NAEQYDPDLVAA 322
Query: 277 WKNGQTGYPFIDAVMRQLRR----------------------------------LLDCTY 302
WK+GQTG+P +DA MR LR+ L+D +
Sbjct: 323 WKHGQTGFPMVDASMRCLRQTGWLNFRMRSMSASVYYHLLQQPWRIGADWFYHHLIDASA 382
Query: 303 CV--------C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
+ C P R DPDG +I+++VPEL P +Y+ P + P
Sbjct: 383 AINYTQWQSQCGLVGKPALRLYNPRKQVRDQDPDGEFIRQWVPELESLPDEYLDRPEQTP 442
Query: 343 LGVQEKANCIISKDYPERIVNHVQA 367
+ VQ I DYP +V++ A
Sbjct: 443 VHVQASCGVDIGDDYPHPVVDYDAA 467
>gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1]
Length = 464
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 150/435 (34%), Gaps = 116/435 (26%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL-------------------- 48
G R FL CL +LD L GG+L +V+G P + ++
Sbjct: 47 GAARRNFLYGCLRELDSAL---GGRLLVVKGDPADVVPRVATAVGADTVHVAADYGPYGR 103
Query: 49 KRELNFTKLCFEQDCEGVK---PYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDID 105
+R+ K + E V+ PY P P K F R +
Sbjct: 104 ERDEQVEKALTDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFS-------RAWAEHG 156
Query: 106 FRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLS 165
+R + S + S P+ Q D P GET A + + L
Sbjct: 157 WRAPAETSASTCTWMDPSGKGGGPRAVQVPADEPCDSALPD----AGETAAAARWADFLD 212
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSH 225
+ + Y S + P G + S LK+GC+ R + R S
Sbjct: 213 EGVAE-----YESQRDMPAKKGT-SGMSPYLKYGCVHPRTL-------LADLGSRRGDSV 259
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
++ WRE++ + P + + ++P + + L WK+G+TG+P
Sbjct: 260 KAYRTEIAWREFYADVLYRRPDSARRNYDTGFDHLPLRTDEAAYDD--LERWKDGRTGFP 317
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQLR R++ ++ V
Sbjct: 318 IVDAGMRQLRAEAWMHNRVRMVVASFLVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQW 377
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P+ G R DPDG Y++R+VPEL P + +++PWK G+ +
Sbjct: 378 TAGSGTDAAPYFRIFNPITQGERFDPDGDYVRRWVPELADVPGKAVHQPWKLKDGLPDG- 436
Query: 350 NCIISKDYPERIVNH 364
YPER+V H
Sbjct: 437 -------YPERMVEH 444
>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
Length = 482
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 73/292 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L+ L + + L S D T + SA L G +S R+ W
Sbjct: 201 WQPGENGAQARLHAFLDDTVSRYADERDLP---SVDAT---SRMSAHLHHGEISPRQI-W 253
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A+ + + +L WRE+ Y + P+ + PW
Sbjct: 254 AMCEQKKLEQPHSDTAINKFQAELGWREFSYHLLHFFPHLPETPFKENFSGFPW-----Q 308
Query: 269 NKEKYLNAWKNGQTGYPFID---------AVMRQLRRLLDCTYCVC-------------- 305
E YL AW+ GQTGYP +D +M R++ ++ +C
Sbjct: 309 ANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVASF-LCKHLLQHWRCGEDWF 367
Query: 306 ----------------------------------PVNFGRRLDPDGIYIKRYVPELRQFP 331
PV G + D G Y++R+VPE+
Sbjct: 368 WDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFDKQGDYVRRWVPEIAALS 427
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNH---VQASLENKQYLKKEKA 380
+Y+++PW+AP V +A + DYPE IV+H QA+L+ ++++ A
Sbjct: 428 NKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREARQAALDAYEHIRLSTA 479
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 68/293 (23%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSG---VYLSNQVSPDLTGPPTSQSAALKFGCLSVRR 205
W GG A + +++F G Y+ + P ++ + S L+FG + +
Sbjct: 196 WSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPGVSTGTSRLSPHLRFGEIGPAQ 255
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPE 265
+ A+ + ++ ++ WRE+ YT+ +NP N + W +
Sbjct: 256 IWRAVRARLEAQQADEDSARVFLS-EIAWREFSYTLLYYNPALATENYNSNFNQMAWRKD 314
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------- 294
+ AW GQTGYP +DA MR+L
Sbjct: 315 -----DSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIVASFLTKHLLLPWQQGEQ 369
Query: 295 ---RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQ 329
L+D P ++ G++ D DG Y++ + PEL
Sbjct: 370 WFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQKFDEDGAYVRHWCPELAG 429
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH---VQASLENKQYLKKEK 379
P +Y++ P++A ++A ++ DYPE I++H Q +L+ + +K+E+
Sbjct: 430 LPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRALDAYKAMKEEQ 482
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 101/472 (21%), Positives = 163/472 (34%), Gaps = 143/472 (30%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE------- 64
R +++ L +L ++ G QL I+ G P+ L LN + + D E
Sbjct: 51 RVTYMIGSLQELQQRYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRD 110
Query: 65 ----------GVK----------------------PYQSFP----TGSHPPRYQPCKTLL 88
G++ PY + S P+ +P +TL
Sbjct: 111 RAILDILKDKGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQ 170
Query: 89 NFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIR 148
N L T SE + + +T+P + + + D +I
Sbjct: 171 NAEGL-------------------TESEQELAQKAGVKTLPTAKDLGFFWDADL---II- 207
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
GE A KL E ++ I Y + P + G TSQ SAALKFG + +R +
Sbjct: 208 -APGEAAAQAKLEEFTAKAITE-----YQEQRNFPAVDG--TSQLSAALKFGVIGIRTVW 259
Query: 208 WALHDHF-NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
A + N+ E + +L WRE++ + P N PW
Sbjct: 260 QATLEALENSRSEEASAAIRTWQQELAWREFYQHAMYNFPELADGAYRETFKNFPW---- 315
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQ--------------------------------- 293
E++ AW+ G+TGYP +DA MRQ
Sbjct: 316 -ETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEKY 374
Query: 294 -LRRLLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
+++L+D P + ++ DPD YI+R+VPELR
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQSQKFDPDAEYIRRWVPELRSMD 434
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
+Y+ PL + Y + IV+H + KQ +++KA +
Sbjct: 435 TEYLVTGKITPLERH-------AVGYVKPIVDHQKQQQLFKQRYQQQKATSL 479
>gi|448565094|ref|ZP_21636065.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
gi|445715753|gb|ELZ67506.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
Length = 482
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 159/449 (35%), Gaps = 111/449 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIF---------QKLKRELNFTKL 57
H G R R+LL+ LA+L + G L + +G P ++ ++ ++++ L
Sbjct: 40 HAGAPRVRYLLDALAELRGAYQERGSDLLVARGDPRAVVPAVAAALDAERATWAIDYSGL 99
Query: 58 CFEQDCE--------GVKPYQSFPTGSHPPRYQPCKT----------LLNFRDLSGLPPR 99
E+D + GV HPP +RD P
Sbjct: 100 ARERDADVRLALDDAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPY 159
Query: 100 PKEDID--FRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P+ D D T T +E+L + F ++ F +P TEA
Sbjct: 160 PEPDADDLADANTLETAAEALAD--AEFDVAAG--DLPTISDLGFEEPSASVQPAGTEAA 215
Query: 158 IKLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDH 213
ERLS +F S Y ++ P T TS+ S LKFG + +R Y A
Sbjct: 216 ---RERLS----AFCSDAIYRYADDRDYP--TRDATSRLSTDLKFGTIGIREVYAATAAA 266
Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S QL WRE++ + +P +I W ++
Sbjct: 267 REGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTENYKEYENDIAWRDDADE----- 321
Query: 274 LNAWKNGQTGYPFID---------AVMRQLRRLLDCTYC----VC--------------- 305
L AWK G+TGYP +D A M R++ ++ +C
Sbjct: 322 LAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTKDLLCDWRHGYAHFREHLAD 381
Query: 306 ----------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYE 337
P+ G R DPDG YI RYVPEL I+E
Sbjct: 382 HDTANDNGGWQWASSTGTDAQPYFRIFNPMTQGERYDPDGEYITRYVPELSDVTANTIHE 441
Query: 338 PWKAPLGVQEKANCIISKDYPERIVNHVQ 366
W ++ + ++ DYPE IV+H +
Sbjct: 442 -WHELTDLERER---LAPDYPEPIVDHSE 466
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 154/405 (38%), Gaps = 88/405 (21%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L L+ L L G L + +G + +L ++ K+ + + E PY+ T
Sbjct: 49 WLHHSLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYE--PPYREIDT 106
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF 134
R P + L P + K + F + + + +T+ P++F
Sbjct: 107 YLEN-RLPPLSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKF 165
Query: 135 HKYPEM---------------DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
++ + D+ +W GE A I L + + + +++ Y ++
Sbjct: 166 SQHRAIKSDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKN-----YPAH 220
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TGQLIWREYF 238
+ PD++ + S L FG +S+R+ + A+ TI + ++ QLIWRE+
Sbjct: 221 RDRPDISST-SHLSPYLHFGEISIRQVWTAITQ--ATIQDKNLQKAADVFLRQLIWREFA 277
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---- 294
Y + H P + N W + +L AW+ G TGYP +DA MR+L
Sbjct: 278 YYLLWHFPQMGKSNFRNQFDNFKW-----KKNKNWLRAWQKGLTGYPIVDAGMRELWCTG 332
Query: 295 -----RRLLDCTYCV-----------------------------------C--------- 305
R++ ++ V C
Sbjct: 333 YMHNRARMIVASFLVKDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFR 392
Query: 306 ---PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
P+ ++ DPDG YIKR++PEL + P +YI+ P P + E
Sbjct: 393 IFNPILQSKKFDPDGTYIKRWIPELAKVPSKYIHYPADMPDNISE 437
>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
gi|119863360|gb|ABM02837.1| deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
37]
Length = 453
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GET AL +L L Q+IE Y N+ P L G + SA LKFG +S +R +
Sbjct: 194 WPAGETAALRRLRHFLLQDIED-----YHHNRDIPSLDGT-SGLSAYLKFGVISAKRCVY 247
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESH 267
+ F + + S F+ +++WRE++ + NP + + N + NI W
Sbjct: 248 EVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKNFNKLADNITW----- 302
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
N AW G+TGY +DA MRQL +
Sbjct: 303 SNNPDDFKAWCEGRTGYGLVDAAMRQLNQ 331
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
Length = 493
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 123/322 (38%), Gaps = 68/322 (21%)
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLN-----ERLSQEIE 169
+ES + + ++ ++F PE F P + LG E L LN + ++
Sbjct: 164 AESNEATLRPYEIDAYADRFVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLD 223
Query: 170 SFKSGVYLSNQVS--PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN 227
+F + +Q P L GP + S ++FG +S+R D T G + +
Sbjct: 224 AFADRMQRYDQTRDFPALKGP-SYLSVHVRFGTVSIRALARRALDAMRTGTGGNGAAVW- 281
Query: 228 ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFI 287
+L+WR++++ + +P+ I W ES + + AW +GQTGYP +
Sbjct: 282 -LSELVWRDFYFMILFQHPHVVDHAFKADYDAITW--ESGDHARRLFQAWCDGQTGYPLV 338
Query: 288 DAVMRQLR---------RLLDCTYCV---------------------------------- 304
DA M QL R++ ++ +
Sbjct: 339 DAAMAQLNQTGYMHNRLRMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWAS 398
Query: 305 ---C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANC 351
C P+ + D G +I+RY+P+L + ++I+ PW AP A
Sbjct: 399 SSGCDAQPYFRIFNPITQSEKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGV 458
Query: 352 IISKDYPERIVNHVQASLENKQ 373
I +YP +V H +A Q
Sbjct: 459 EIGNNYPGPLVQHDEARARTLQ 480
>gi|445499214|ref|ZP_21466069.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
gi|444789209|gb|ELX10757.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
Length = 490
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 93/250 (37%), Gaps = 75/250 (30%)
Query: 189 PTSQSAALKFGCLSVRRFYWALHD--HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNP 246
P+ S +FG LSVR + D EG P +LIWRE++ + HNP
Sbjct: 253 PSYLSLHFRFGTLSVRHLVRTVLDLTARGAGGEGAPV----WLAELIWREFYAMILYHNP 308
Query: 247 YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL-------RRLLD 299
+ P I W E+ P ++ AW G+TGYP +DA M QL RL
Sbjct: 309 HVVGGAYKPAYDAIQW--ETGPEADELYAAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRM 366
Query: 300 CTYCVC-------------------------------------------------PVNFG 310
T C PV
Sbjct: 367 VTACFLIKDLGIDWRRGEAYFALHLNDFDLASNNGGWQWASSSGCDAQPYFRIFNPVTQS 426
Query: 311 RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA--- 367
+ D G +I+RY+P+L+ + I+ PW AP ++ DYPE +V H +A
Sbjct: 427 EKFDSKGKFIRRYLPQLKDLTDKEIHAPWLAPR--------MLPLDYPEPLVMHDEARKR 478
Query: 368 SLENKQYLKK 377
+LE +KK
Sbjct: 479 TLERYAVVKK 488
>gi|339998617|ref|YP_004729500.1| deoxyribodipyrimidine photolyase [Salmonella bongori NCTC 12419]
gi|339511978|emb|CCC29694.1| deoxyribodipyrimidine photolyase [Salmonella bongori NCTC 12419]
Length = 473
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 83/259 (32%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y S + P + G + SA+L G LS R+ L +G P S + +LIWR
Sbjct: 224 YASRRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWR 280
Query: 236 EYFY-------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
E++ + H P+ ++ + W SH Y AW+ G+TGYP +D
Sbjct: 281 EFYRHLITWYPALCKHQPFIRWTKR------VAWQENSH-----YFQAWQKGETGYPIVD 329
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 330 AAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAAS 389
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P G R D DG +I++++P LR P + I+EPW+ EKA +
Sbjct: 390 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDLPGKAIHEPWR----WAEKAGVV 445
Query: 353 ISKDYPERIVNHVQASLEN 371
+ DYP IV+H QA +
Sbjct: 446 L--DYPRPIVDHKQARVAT 462
>gi|253999882|ref|YP_003051945.1| deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus glucosetrophus
SIP3-4]
Length = 481
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 102/271 (37%), Gaps = 77/271 (28%)
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
+ G + + ER+++ Y + P + GP + S L+FG +S+R
Sbjct: 210 MSGGQQLFAEFQERMAR---------YKDARDFPAVKGP-SYLSVHLRFGTVSIRHLART 259
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
N E +LIWR++++ + H+P Q+ + + + PN
Sbjct: 260 AWQQHNAGAE-------TWLNELIWRDFYFQVLHHHP---QVAAGR-AFKLEFDAIAFPN 308
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQL----------------------------------R 295
++ +AW G+TGYP +DA MRQL
Sbjct: 309 QQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTASFLVKDLLIDWRWGERYFAE 368
Query: 296 RLLD--------------CTYCVC--------PVNFGRRLDPDGIYIKRYVPELRQFPIQ 333
RL+D T C PV + D G +I++YVPEL +
Sbjct: 369 RLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDAQGKFIRKYVPELAACHEK 428
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
I+ PW P Q+ +I KDYP +V H
Sbjct: 429 EIHAPWLMPPLRQQSLGLVIGKDYPAPVVEH 459
>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
Length = 503
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 128/348 (36%), Gaps = 85/348 (24%)
Query: 83 PCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDF 142
P + ++F + P+P++ D T +S E +++Q + K Q DF
Sbjct: 149 PVQIYVHFWNQCLSLPQPRKPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDF 208
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESF--KSGVYLSNQVSPDLTGPPTSQSAALKFGC 200
P GE +A+ KL + + ++ KS N S + S L FG
Sbjct: 209 WHP------GEEQAISKLKSFIKNSLNAYAEKSQCLRLNTTS--------NLSPYLHFGE 254
Query: 201 LSVRRFYWALHDHFNTIHEGRPP-----SHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
+S + H + PP S L WREY + H P Q
Sbjct: 255 ISPFTVW---HSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCHLLFHYPDLPQK---- 307
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-- 304
C + L +W+ G TGYP +DA MRQL R++ ++ +
Sbjct: 308 -CFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLRMIVASFLIKH 366
Query: 305 --------------------------------------CP-------VNFGRRLDPDGIY 319
CP + G + D DG Y
Sbjct: 367 LLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPITQGEKFDADGYY 426
Query: 320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+++++PEL P YI++PW+AP V +KAN ++ K YP IV H A
Sbjct: 427 VRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAA 474
>gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
AAC00-1]
gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
AAC00-1]
Length = 493
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 99/252 (39%), Gaps = 66/252 (26%)
Query: 189 PTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
P+ S L+FG LS RR A H+ G +LIWR++++ + AH+P
Sbjct: 246 PSYLSVHLRFGTLSPRRAARAAHERMRQGSTGAA----TWLNELIWRDFYFQVLAHHPQV 301
Query: 249 DQMEK-NPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
P I W E P + AW G+TGYP +DA M Q+ R++
Sbjct: 302 AGGASFKPAYDAIAW--EDGPQARERFAAWCEGRTGYPLVDAAMAQINRTGYMHNRLRMV 359
Query: 299 DCTYCV-------------------------------------C----------PVNFGR 311
++ V C PV+ R
Sbjct: 360 VASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSR 419
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---S 368
+ DP G +I+ Y+P+L P ++++ PW+A E A + +YP +V+H +A +
Sbjct: 420 KFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPVVDHDEARQRT 479
Query: 369 LENKQYLKKEKA 380
L +K E A
Sbjct: 480 LARYAVVKSEAA 491
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 106/286 (37%), Gaps = 85/286 (29%)
Query: 141 DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGC 200
D G + W G T A L + L + +Y + P L + S L+FG
Sbjct: 196 DTGLAALGWQAGSTGAQAALAQFLP------RLPLYHEERDFPALDAT-SRLSPHLRFGT 248
Query: 201 LSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLN 259
LSVR+ D HEG +L+WR++++ + H P Q P+
Sbjct: 249 LSVRQLVRLATD---AGHEGAQ----AWLNELVWRDFYHQVLWHRPQLAQGHAFKPVYDQ 301
Query: 260 IPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------------------------ 295
+ W P + + AW G+TGYP +DA MRQLR
Sbjct: 302 LDW-----PGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAKDLLLD 356
Query: 296 -RLLDCTYCVC-------------------------------PVNFGRRLDPDGIYIKRY 323
RL + + C PV+ R+ DPDG +I+ +
Sbjct: 357 WRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHFIRHF 416
Query: 324 VPELRQFPIQYIYEPWKA---PLGVQEKANCIISKDYPERIVNHVQ 366
VPEL + + I+ PW A P G DYP +V+H +
Sbjct: 417 VPELARLDAEAIHAPWLARRLPPGFSP------GHDYPLPLVDHAR 456
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 101/448 (22%), Positives = 160/448 (35%), Gaps = 116/448 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF--- 59
P +G +L LADL R L H G L +++GS + +L RE + +
Sbjct: 50 PALHSLGGASRWWLHGALADLRRTLGRHQGTLLMLKGSAEKLVPQLARETGAQSVYWHHR 109
Query: 60 ------EQD--------CEGVKPYQSFPTGSHPPR---------YQPCKTLLNFRDLSGL 96
EQD +G S+ T P YQ T +
Sbjct: 110 LHQKEREQDERIAIALKTQGAAAEGSWGTVLLDPAQVQTKEGRFYQVFTTFWKAFQAQDV 169
Query: 97 PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEA 156
P + ++F +S+SL + L ++ P +P+ G W GE EA
Sbjct: 170 PEPLGSPAN---LSFYPLSDSLLAQYWLDESTLLP----THPDWAAG-LRASWEPGEKEA 221
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL-----H 211
L + + + + G +++S + T + S L G +S R+ + AL H
Sbjct: 222 HEHLEDFVRHDCSRYGKG---RDELSREGT---SRLSPYLASGAISPRQIWAALQKKGAH 275
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D I ++ WRE+ H +PW E
Sbjct: 276 DEGARI----------FLSEIGWREFAKYTLFHQARLPDTSLGQKFEKMPW-----RKSE 320
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------L 297
K L AW+ G+TG P +DA MRQL + L
Sbjct: 321 KDLLAWQQGRTGVPIVDAGMRQLWKTGWMHNRARMIVGSFLTKHLLIDWREGEAWFRDTL 380
Query: 298 LDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFPIQYI 335
+D + +N+ G + DPDG YI+++VPEL++ + +
Sbjct: 381 VDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKFDPDGDYIRQWVPELKKLSGKDL 440
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVN 363
+EPW A G E+A + K YP +V+
Sbjct: 441 FEPWNAKEGDLERAGITLGKTYPRPVVD 468
>gi|383760053|ref|YP_005439039.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
gi|381380723|dbj|BAL97540.1| deoxyribodipyrimidine photo-lyase Phr [Rubrivivax gelatinosus
IL144]
Length = 501
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 62/228 (27%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
L+FG LS+RR H G +LIWRE+++ + H+P P
Sbjct: 254 LRFGTLSIRRLAREAHQRSTAGSRGAEI----WLSELIWREFYHQLLHHHPRVVGGCFKP 309
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV---------MRQLRRLLDCTYCV-- 304
+ W E + ++ AW G+TGYP +DA M R++ ++
Sbjct: 310 EYDRLHW--EHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRLRMISASFLTKD 367
Query: 305 -----------------------------------C----------PVNFGRRLDPDGIY 319
C PV R DP+G +
Sbjct: 368 LGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVAQSERFDPEGRF 427
Query: 320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
I+RY+P+L + P ++ PW+A A ++ +DYPE +V H +A
Sbjct: 428 IRRYLPQLARLPDALLHAPWRARPADLAAAGVVLGRDYPEPVVAHDEA 475
>gi|365969561|ref|YP_004951122.1| deoxyribodipyrimidine photo-lyase [Enterobacter cloacae EcWSU1]
gi|365748474|gb|AEW72701.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae EcWSU1]
Length = 440
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 117/296 (39%), Gaps = 78/296 (26%)
Query: 131 PEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPT 190
PE+ YP+ F + L E A+ KL ++ +G Y + + P G +
Sbjct: 154 PEREFDYPQQAFDETLFP--ATEKNAIAKL-----RQFCKAGAGDYDARRDFPATEGT-S 205
Query: 191 SQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQ 250
SA L G LS R+ L +G P S + +LIWRE++ + ++P D
Sbjct: 206 RLSACLALGVLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTYHP--DL 261
Query: 251 MEKNPICLNIPWLPESH-PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDC 300
+ P IPW + E +L AW+ G+TG+P +DA MRQL R++
Sbjct: 262 CKHRPF---IPWTDNVKWQHNESHLQAWQKGETGFPIVDAAMRQLNETGWMHNRLRMITA 318
Query: 301 TYCV-----------------------------------------------CPVNFGRRL 313
++ V P G++
Sbjct: 319 SFLVKDLLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPATQGQKF 378
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
D DG +I+R++P L P + I++PW +K + DYP IV+H QA +
Sbjct: 379 DADGEFIRRWLPALSSVPAKAIHDPW----AWADKQG--VKLDYPRPIVDHKQARV 428
>gi|427739107|ref|YP_007058651.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427374148|gb|AFY58104.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 519
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 56/322 (17%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT----KLCFEQDC 63
+G R RFL ECL +LD L+ G +LFI +G+ + + Q + +EL KL F +D
Sbjct: 44 VGKARVRFLFECLENLDVNLQEIGSKLFIFEGNSVDVIQNITKELIQKSYQPKLYFNRDV 103
Query: 64 E---GVKPYQSFPTGSHPPRYQPCKTLLNF----------------RDLSGLPPRPKEDI 104
+ GV + + L NF + L P P DI
Sbjct: 104 QVEYGVTRDKLIIDFYQQQNLECYIGLSNFIQPQECREEWFNEYYTYQRNSLYPAPT-DI 162
Query: 105 DFRHVTFGT---MSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLN 161
+ ++F + + L+++ S+F K I + GGETEA LN
Sbjct: 163 NTPKISFKSPQLTVKELKQKYSVFWETDK----------------IYFPGGETEATAVLN 206
Query: 162 ERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
LS + + V +++ + + P L FG +S R Y +
Sbjct: 207 SFLSSRFKGYHWKVSRPWMAQKRATSHLSP------HLAFGTVSTRMVYQKTKKRAEEL- 259
Query: 219 EGRPPSHFNITG---QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
E +P + F++ +L W + F +P + P E P K++
Sbjct: 260 EKQPKAGFSLKAFRDRLRWHDSFTQRLYSHPEIAYTNRFPEFDEYYQPDELTPEKQELFE 319
Query: 276 AWKNGQTGYPFIDAVMRQLRRL 297
AW G TG+P +DA MRQL+R+
Sbjct: 320 AWCEGMTGFPMVDASMRQLKRM 341
>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 483
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 110/268 (41%), Gaps = 79/268 (29%)
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y+ + P + G TSQ S L G LS R+ + L + F + F+ +LIW
Sbjct: 230 YVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
Query: 235 REYFYTMSAHNPYYDQMEKNPICLN---IPWLPESHPNKEKYL-NAWKNGQTGYPFIDAV 290
RE++ + A P +C+ IPW + NK+ +L AWK G TG+P IDA
Sbjct: 288 REFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MRQL R++ ++ V
Sbjct: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
P G+R DP G +I+ ++PEL P QYI+ AP +K + +S
Sbjct: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LS 453
Query: 355 KDYPERIVNHVQASLE--NKQYLKKEKA 380
+YP IV+H +A N+ Y K+++
Sbjct: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQS 481
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 93/443 (20%), Positives = 157/443 (35%), Gaps = 108/443 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
+G + +L LA L L+ GG+L + G I + L E + + + +
Sbjct: 47 LGGAQEWWLHHSLAALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYD--- 103
Query: 68 PYQSFPTGSHPPRYQPCKTL---LNFRDLSGL----PPRPKEDIDFRHVTFGTMSESLQ- 119
PTG + K L R SG P R + + + +L+
Sbjct: 104 -----PTGMATDKALKQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEG 158
Query: 120 -----------REVSLFQTVPKPEQFHKYPEM--------DFGDPLIRWLGGETEALIKL 160
+ ++ + PK E+ + + DF D W GET AL KL
Sbjct: 159 SDEPHAPADPPKSLTAPKVWPKSEKLSNWKLLPTKPDWAKDFSDI---WTPGETGALDKL 215
Query: 161 NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
++ + ++ ++ G + + L P AA + +V L H +
Sbjct: 216 DDFIDGALKGYEEGRDFPAKPATSLLSP---HLAAGEISPAAVWHATKGLSRHIASNDIS 272
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
R +++WRE+ Y + H P + N W + EK AW G
Sbjct: 273 R------FRKEIVWREFCYHLLFHFPELGEKNWNDSFDAFSWR-----DDEKSFKAWTRG 321
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
TGYP +DA M R++ ++ +
Sbjct: 322 MTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNA 381
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
P+ G + D DG Y++R+VPEL + +YI++P++AP
Sbjct: 382 ANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKD 441
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+KA + K YP IV+H +A
Sbjct: 442 ALKKAGVELGKTYPLPIVDHGKA 464
>gi|403375006|gb|EJY87472.1| hypothetical protein OXYTRI_02690 [Oxytricha trifallax]
Length = 579
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 100/442 (22%), Positives = 162/442 (36%), Gaps = 101/442 (22%)
Query: 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIF-QKLKRELNFT-----KLC 58
T+ G R RF+LE + +L+ G +L + P Q + ++++ T ++C
Sbjct: 119 TLKCGLVRTRFILESAQNFRDRLEKIGSKLLVTMDKPEDFLPQLIDKDVDNTIVYQDEIC 178
Query: 59 FEQ---------DCEGVK--------PYQSFPTGSHPP-------RYQPCKTLLNFRDLS 94
E+ CEG K Y G HP +++ + R L
Sbjct: 179 SEELAVEKAVKESCEGQKIVNLWGSTVYHVDDLGFHPKELPHIYGKFREKTADVKIRPLF 238
Query: 95 GLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD--PLIRWLGG 152
P + + + L E S F K F K D ++GG
Sbjct: 239 AQPKSGQ-------LPYAKEPSPLMEEASKFMPTLKDFGFTKEQIEKPKDKRACYDFVGG 291
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
E A+ +LNE + + +N + + + + S L G LS + Y+ + +
Sbjct: 292 EDNAVKRLNEYIMGTKSVGSYAITRNNLIGANYS---SKFSPWLACGALSPKYIYYQVKE 348
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
F H+ + +L WR+++ + Y +QM + N + + +
Sbjct: 349 -FEKTHKSNESTKV-FLDELFWRDFYRFWAIK--YGNQMFSSYGIYNREYY--NWQEDRE 402
Query: 273 YLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPV---------------- 307
+ WK G TG P IDA MR+ R++ Y +
Sbjct: 403 NVRRWKEGSTGMPIIDAFMRECNETGFMPNRGRMIVACYLTMDLKHDWREGAYHFEEKLI 462
Query: 308 -----------NF------GRRL-----------DPDGIYIKRYVPELRQFPIQYIYEPW 339
NF GR L D G YIK +VPEL+ PI+YI+EPW
Sbjct: 463 DHDVQSNYGGWNFSAGIGPGRVLVFNSIKQSKDHDKHGEYIKMWVPELKNVPIEYIHEPW 522
Query: 340 KAPLGVQEKANCIISKDYPERI 361
P +Q+ + CII +DYP I
Sbjct: 523 TMPKDLQKGSKCIIGQDYPHPI 544
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 120/321 (37%), Gaps = 84/321 (26%)
Query: 119 QREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLS 178
+RE P F YP+++ G GE AL +L ++++ YL
Sbjct: 176 RREGGALPVSVAPAAF-DYPQVEAGADFP---AGEDAALKRLRAFCREQVQD-----YLQ 226
Query: 179 NQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYF 238
+ P + G +S S L G LS R+ + L + E F +LIWRE++
Sbjct: 227 QRDFPAIAGT-SSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFY 285
Query: 239 YTMSAHNPYYDQMEKNPICLNIPWLPESHP----NKEKYLNAWKNGQTGYPFIDAVMRQL 294
+ P +C + P++ + N + L AW+ G TGYP +DA MRQL
Sbjct: 286 RHLMVAYP--------ALCRHRPFIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQL 337
Query: 295 R---------RLLDCTYCV----------------------------------------- 304
R++ ++ V
Sbjct: 338 NKTGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAA 397
Query: 305 ------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYP 358
P G R DP G +I++++PEL P +++P L +++ + DYP
Sbjct: 398 PYFRIFNPTTQGERFDPQGTFIRKWLPELADVPDNALHQP---HLWAEKQQRTL---DYP 451
Query: 359 ERIVNHVQASLENKQYLKKEK 379
IV+H QA LE + K
Sbjct: 452 LPIVDHKQARLETLAAFEAAK 472
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 69/288 (23%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A +L L EI S+ N+ S D + S L+FG + R+ +
Sbjct: 212 WRPGENGAQERLKAFLEGEIASYS---LERNRPSADAV---SRLSPHLRFGEIGPRQIFA 265
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A+ ++ + +L WRE+ Y +S ++P + +PW E P
Sbjct: 266 AVRTAWDNAAQ---KGGVKFLAELGWREFNYHLSFYHPDAARQNIQRRFDKMPWR-EPAP 321
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------------- 304
+ L+AW+ G+TGYP IDA MR+L R++ ++ +
Sbjct: 322 RE---LSAWQRGETGYPLIDAGMRELWATGYMHNRVRMVVASFLIKHLLIDWRIGENWFW 378
Query: 305 ---C-------PVNF----------------------GRRLDPDGIYIKRYVPELRQFPI 332
C P+N+ G + D G Y++R++PEL + P
Sbjct: 379 DTLCDADPANNPMNWQWVAGSGADAAPYFRIFNPVLQGEKFDAAGDYVRRWIPELAKLPN 438
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
++I++P+ AP + A + K+YP IV+ + +K K
Sbjct: 439 KWIHKPFAAPPALLRGAGVELGKNYPRPIVDLAEGRARALAAFEKVKG 486
>gi|402851511|ref|ZP_10899666.1| Deoxyribodipyrimidine photolyase [Rhodovulum sp. PH10]
gi|402498244|gb|EJW10001.1| Deoxyribodipyrimidine photolyase [Rhodovulum sp. PH10]
Length = 493
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 111/280 (39%), Gaps = 75/280 (26%)
Query: 149 WLGGETEALIK----LNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSV 203
W GG E + RLS+ +E +G Y + PDL P TS+ S L+FG LS
Sbjct: 203 WAGGLRETWTRGEAAAQARLSEFVEDGLAG-YADKRDRPDL--PHTSRLSPRLRFGELSP 259
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNI---TGQLIWREYFYTMSAHNPYYDQMEKNPICLNI 260
+ + A GR PS ++ +L+WRE+ + + A +P
Sbjct: 260 FQVFSAAA-LAREAPPGRRPSDTDVDKFVAELVWREFSWHLLAAHPDIATANIQEKFDAF 318
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------- 304
PW + L+AW+ G+TGYP +DA MR+L R++ ++ V
Sbjct: 319 PWR-----DDPAALSAWQRGETGYPIVDAGMRELWTTGWMHNRVRMVAASFLVKHLLTDW 373
Query: 305 ----------------------------------------CPVNFGRRLDPDGIYIKRYV 324
PV GR+ DP G Y++++V
Sbjct: 374 RAGERWFQDTLVDADAASNPASWQWVAGSGADAAPYFRIFNPVLQGRKFDPAGDYVRQFV 433
Query: 325 PELRQFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVN 363
P LR P ++ P+ A PL + A + K YP +V+
Sbjct: 434 PALRSLPAPAVHAPFAARPLDLA-AAGVTLGKTYPAPVVD 472
>gi|333926094|ref|YP_004499673.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333931047|ref|YP_004504625.1| deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|386327917|ref|YP_006024087.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
gi|333472654|gb|AEF44364.1| Deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|333490154|gb|AEF49316.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333960250|gb|AEG27023.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
Length = 476
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 117/315 (37%), Gaps = 90/315 (28%)
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
RE + P F YP+ + G + + GE AL +L ++++ YL
Sbjct: 177 REGGVLPVSAVPAAF-DYPQAEVG---VDFPAGEDAALQRLRAFCREQVQD-----YLQQ 227
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY 239
+ P + G +S S L G LS R+ + L + E F +LIWRE++
Sbjct: 228 RDFPAIAGT-SSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYR 286
Query: 240 -------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
+ H P+ + +K + W + + L AW+ G TGYP +DA MR
Sbjct: 287 HLMVAYPALCRHRPFIEWTDK------VRW-----QDNDVLLLAWQQGATGYPIVDAAMR 335
Query: 293 QLR---------RLLDCTYCV--------------------------------------- 304
QL R++ ++ V
Sbjct: 336 QLNETGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 305 --------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
P G R DP G +I++++PEL P +++P + Q + D
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVPDNALHQPHRWAEKQQR------TLD 449
Query: 357 YPERIVNHVQASLEN 371
YP IV+H QA LE
Sbjct: 450 YPLPIVDHKQARLET 464
>gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus
(fragment)
gi|142783|gb|AAA22361.1| DNA photolyase, partial [Bacillus firmus]
Length = 339
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 104/271 (38%), Gaps = 72/271 (26%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE A+ +L + + +K+ N+ P +TG + S +K G +S R Y+ +
Sbjct: 70 GEEHAIKRLQMFTKKRLSGYKA-----NRDFPSITGT-SRLSPYIKTGAVSSRSIYYHIL 123
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ E S +L WR+++ + + P E + W SH +
Sbjct: 124 NA-----EADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNW---SHDQDD 175
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL---------RRLLDCTYCVCPVNFGRRL--------- 313
L +WK G+TG+P +DA MRQL R++ ++ + RL
Sbjct: 176 --LTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERML 233
Query: 314 --------------------------------------DPDGIYIKRYVPELRQFPIQYI 335
D +G YI+ Y+PEL P YI
Sbjct: 234 IDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYI 293
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
+EPWK Q K C + +DYP IV+H +
Sbjct: 294 HEPWKMSEEEQVKYKCRLDEDYPLPIVDHSK 324
>gi|453053468|gb|EMF00932.1| deoxyribodipyrimidine photo-lyase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 454
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 93/253 (36%), Gaps = 77/253 (30%)
Query: 171 FKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT 229
++GV ++ DL TS+ SA L FGCLS T G P
Sbjct: 212 LRNGVDRYAELHDDLAADATSRLSAYLHFGCLSPLEVV--------TRARGDSPGAEAFV 263
Query: 230 GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
QL WR++ + + A P + + W ++ +AW+ G TGYP +DA
Sbjct: 264 RQLAWRDFHHQVLAARPRAAVADYR--TRHDRWRRDA-----GEFDAWRAGHTGYPVVDA 316
Query: 290 VMRQL----------------------------------RRLLDCTYC------------ 303
MRQL R L+D
Sbjct: 317 AMRQLAHEGWTHNRARMIVASFLAKTLHHDWREGARHFLRHLVDGDLANNQLNWQWMAGT 376
Query: 304 ---------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
+ PV GRR DP G Y++R+VPEL P ++EPWK P V+
Sbjct: 377 GTDTRPNRVLNPVVQGRRFDPGGDYVRRWVPELAGVPGPAVHEPWKLPAAVRSGLR---- 432
Query: 355 KDYPERIVNHVQA 367
YPE +V+ +A
Sbjct: 433 --YPEPLVDLAEA 443
>gi|440288513|ref|YP_007341278.1| deoxyribodipyrimidine photolyase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440048035|gb|AGB79093.1| deoxyribodipyrimidine photolyase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 472
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 119/296 (40%), Gaps = 86/296 (29%)
Query: 137 YPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
YP+ DF + E A+ +L + Q +G Y S + P + G + SAAL
Sbjct: 192 YPQQDFDAS--HFPADEKSAIRQLRQFCQQ-----GAGEYASQRDFPAIEGT-SRLSAAL 243
Query: 197 KFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
G +S R+ + L + T+ +G N +LIWRE++ + +NP
Sbjct: 244 AIGAISPRQCLHRLLTEQPKTLDDGPGSVWLN---ELIWREFYRHLMTYNP--------A 292
Query: 256 ICLNIPWLPESHPNKEK----YLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY 302
+C + P++ + K + +L AW+ GQTGYP +DA MRQL R++ ++
Sbjct: 293 LCKHRPFIGWTERVKWRVSPEHLKAWQEGQTGYPIVDAAMRQLNATGWMHNRLRMIAASF 352
Query: 303 CV-----------------------------------------------CPVNFGRRLDP 315
V P G R D
Sbjct: 353 LVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 412
Query: 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
+G +I+++V EL + P + I+EPWK +K ++ YP IV H QA E
Sbjct: 413 EGEFIRQWVSELAEVPQKAIHEPWK----WADKEGVTLA--YPRPIVCHKQARSET 462
>gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
Length = 477
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 65/228 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S LK G +S+R + A+++ EGR +L WR++++ + AH P + E
Sbjct: 242 SRFLKTGTISIRTIFHAIYEEALYEDEGRE----TFIKELAWRDFYHMIYAHYPEMKEKE 297
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------ 294
N + W E AW G+TG+P +DA MRQL
Sbjct: 298 INSAFQGMKW-----NEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFL 352
Query: 295 ----------------RRLLD-------------CTYCVCPVNFGRRLDP---------D 316
++L+D + V + R +P
Sbjct: 353 TKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRFDPS 412
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
G I++YVPEL + ++I+EP K P+ Q K+ C++ YP V+H
Sbjct: 413 GELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDH 460
>gi|350539503|ref|NP_001234667.1| cryptochrome 1 [Solanum lycopersicum]
gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum]
gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum]
Length = 679
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 95/247 (38%), Gaps = 75/247 (30%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ---------LIWREYFYTMSAHNP 246
L FG +SVR+ + HF I + + N G+ + REY MS ++P
Sbjct: 247 LHFGEVSVRKVF-----HFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNHP 301
Query: 247 YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------ 294
Y + PW+ + E Y AW+ G+TGYP +DA MR+L
Sbjct: 302 YSHERPLLGHLRYFPWVVD-----EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
Query: 295 ----------------------RRLLDCT---------YCVCPVNFGRRL---------- 313
LLD Y + GR L
Sbjct: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFVG 416
Query: 314 ---DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLE 370
DP G Y++R++PEL + P ++I+ PW AP V E A + +YP IV A +
Sbjct: 417 YKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVR 476
Query: 371 NKQYLKK 377
+Q L +
Sbjct: 477 LEQALSQ 483
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/458 (21%), Positives = 170/458 (37%), Gaps = 123/458 (26%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPIS-IFQKLKRELNFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P +F+ +K+ + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVS 103
Query: 56 KLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV-----T 110
+ F ++ + + + C+ + + G ++D+ F H+
Sbjct: 104 TVAFHEEVASEE-----KSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDV 158
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPE------------------MDFGDPLIRWLGG 152
+ ++++ + + + PEQ P +D GG
Sbjct: 159 YTQFRKAVEAQGRVRPVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGG 218
Query: 153 ETEALIKLNERL--SQEIESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
ETEAL +L + + ++K GV S + SP L GC+S R
Sbjct: 219 ETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTKFSP-----------WLALGCISPR 267
Query: 205 RFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS---AHNPYYDQMEKNPICLNIP 261
Y + + + S + + +L+WR+YF ++ + +Y ++ ++P
Sbjct: 268 YIYEQIKKY--EVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDK---HVP 322
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------R 296
W + K +AWK G+TG PF+DA MR+L R
Sbjct: 323 WNTDM-----KMFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWR 377
Query: 297 L-------LDCTYCVCPVNFGRRL------------------------DPDGIYIKRYVP 325
L L + VC N+G L D +G Y++++VP
Sbjct: 378 LGAEWFEYLLVDHDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNNGDYVRQWVP 436
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
ELR ++ PW A +++ YP I+
Sbjct: 437 ELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPIIT 474
>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
Length = 472
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 91/236 (38%), Gaps = 70/236 (29%)
Query: 196 LKFGCLSVRRFY----WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
LK+GC+ R A + +G + ++ WRE++ + A NP +
Sbjct: 229 LKWGCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAANPSSARS 288
Query: 252 EKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY 302
+ + + + P + AWK G+TGYP +DA MRQL R+++ ++
Sbjct: 289 DLSETLARMSYEPPG-----ESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASF 343
Query: 303 CVC------------------------------------------------PVNFGRRLD 314
VC PV+ GRR D
Sbjct: 344 -VCKDLHVHWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRRFD 402
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER---IVNHVQA 367
PDG YI+R+VPELR P + ++EPWK P G I ER + H QA
Sbjct: 403 PDGEYIRRWVPELRGLPAELVHEPWKCPGGPPNGYPGPIVDHAVERRDALARHAQA 458
>gi|244539057|dbj|BAH83100.1| deoxyribodipyrimidine photolyas [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 477
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 99/344 (28%)
Query: 106 FRHVTFGTMSESLQREVSLFQTVPKPEQFHK-------YPEMD--FGDPLIRWLGGETEA 156
FR T+ +S ++F ++P P+++++ P+ D F + + GE A
Sbjct: 154 FRKKVINTLKKS-----NVF-SLPSPQRYYRNTITVKPIPKFDYPFNESSQEFPLGEESA 207
Query: 157 LIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF-N 215
L L S +I S+ + L + S P L G +S R+ L +H+ N
Sbjct: 208 LNLLEIFCSTKITSYATQTNLPSLYSTSYLSP------YLAVGIISPRQCLNTLLNHYPN 261
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP----NKE 271
+ S FN QLIWRE++ A P+ +C+ P++ ++ E
Sbjct: 262 LLENNIAVSWFN---QLIWREFYNHTLAKYPF--------LCMGKPYIDWTNNIVWNTDE 310
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------ 304
++L AW+NG TGYP IDA MRQL R++ ++ V
Sbjct: 311 EHLIAWQNGYTGYPIIDAGMRQLNSTGWMHNRIRMITASFLVKDLLIDWRIGEKYFMLHL 370
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
P G+++DP+G +I++++PEL + P +YI
Sbjct: 371 LDGNLALNNGNWQWISSTGNNSWPYFRSFNPTTQGKKIDPNGDFIRKWLPELNEVPSKYI 430
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
+ P + K DYP I++H +A + KK K
Sbjct: 431 HNPHDWAQHSKYKI------DYPLPIIDHNEARQKMLMAFKKAK 468
>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
Length = 469
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/436 (22%), Positives = 150/436 (34%), Gaps = 102/436 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD- 62
G + G +R +F+ EC+ADL ++L+ G L + G P + L L +
Sbjct: 58 GALKTGAHRAKFIQECVADLRQRLQGLGSDLVVAVGQPEQLLPALLEGGGAAPLVLTAEE 117
Query: 63 ------------CEGVKPYQS------------FPTGSHPPRYQPCKTLLNFRDLSGLPP 98
+KP + P + P K + R LPP
Sbjct: 118 VTSEEAAVDVAVARAIKPAGGKLLRYWGHTMYHYDDLDLPDVFTPFKEKVEKRAALPLPP 177
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
P+ + Q P P H +DF GGET AL
Sbjct: 178 APRLGAT-------AAAALAAPLPGWEQLPPAPPVTHPKAVLDFK-------GGETAALA 223
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIH 218
+L L +S Y + T + L GC+S R+ + + + +
Sbjct: 224 RLKYYL---WDSDLLSTYFDTRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRKYESQRF 280
Query: 219 EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+ S + + +LIWR++F + + E L + W +P+ E + W+
Sbjct: 281 SNK--STYWVIFELIWRDFFRFFALKHGNRIFFETGTSGLPLVW----NPDPELWAR-WR 333
Query: 279 NGQTGYPFIDAVMRQL--------------------------RR--------LLD----- 299
G+TG P +DA MR+L RR LLD
Sbjct: 334 EGRTGLPLVDANMRELAATGFMSNRGRQNVASYLVLDLGVDWRRGADYFEEVLLDYDVTS 393
Query: 300 --CTYCVCPVNFGRRL------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
+ G R+ DP G Y+K + PEL+ P+ ++EPW
Sbjct: 394 NWGNWVAAAGLTGGRVNHFNIAKQSKDYDPTGEYVKTWCPELKNVPVTKVHEPWLMSKEE 453
Query: 346 QEKANCIISKDYPERI 361
QE++ C I DYP I
Sbjct: 454 QERSGCRIGVDYPNPI 469
>gi|395227400|ref|ZP_10405726.1| deoxyribodipyrimidine photolyase [Citrobacter sp. A1]
gi|424728896|ref|ZP_18157501.1| deoxyribodipyrimidine photolyase [Citrobacter sp. L17]
gi|394718728|gb|EJF24349.1| deoxyribodipyrimidine photolyase [Citrobacter sp. A1]
gi|422896767|gb|EKU36549.1| deoxyribodipyrimidine photolyase [Citrobacter sp. L17]
Length = 472
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 111/285 (38%), Gaps = 84/285 (29%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-F 206
R++ E A+ +L Q + G Y + P + G + SA+L G LS R+
Sbjct: 201 RFVADEKLAIAQLRHFCQQAV-----GEYEQQRDFPAIDGT-SRLSASLATGGLSPRQCL 254
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
L + + GR N +LIWRE++ + ++P +C P++ +
Sbjct: 255 NRLLAEQPQALEGGRGSVWLN---ELIWREFYRHLMTYHP--------ALCRYQPFIRWT 303
Query: 267 H----PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------- 304
N +L AWK G TGYP +DA MRQL R++ ++ V
Sbjct: 304 DRVQWQNNPTHLQAWKTGSTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRK 363
Query: 305 --------------------------------------CPVNFGRRLDPDGIYIKRYVPE 326
P G + D DG +I+++VPE
Sbjct: 364 GEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIRQWVPE 423
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
LR P + I++PW EKA +S YP IV+H QA L
Sbjct: 424 LRDVPGKAIHDPWSWA----EKAQVTLS--YPRPIVDHKQARLAT 462
>gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 494
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 108/285 (37%), Gaps = 86/285 (30%)
Query: 161 NERLSQEIESF---KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+E + Q + SF K GVY + P L G T S L G LSVR+ A+ +
Sbjct: 225 DEVILQHLYSFCCDKVGVYHQQRDYPSLEGTSTL-SPYLAIGALSVRQCLKAVQQVDPSC 283
Query: 218 HE-GRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKN----PICLNIPWLPESHPNKEK 272
E + F +LIWRE+++ + A Y + K + W +SH
Sbjct: 284 LEINKECGGFVWVNELIWREFYHHLMAE---YKHLCKGQPFQAYTQYVTWNEDSH----- 335
Query: 273 YLNAWKNGQTGYPFIDAVMRQ----------------------------------LRRLL 298
YL AW+ G+TG+P +DA MRQ L+ L+
Sbjct: 336 YLKAWQQGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKDLLLHWHHGERWFLQHLI 395
Query: 299 DCTYC----------------------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIY 336
D + P G R DP+G +I++++PEL P +YI+
Sbjct: 396 DGDFASNNGGWQWAASTGTDAQPYFRVFNPTTQGERFDPEGEFIRKWIPELVDVPNKYIH 455
Query: 337 EP--WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
P W K YP I++H QA L + K K
Sbjct: 456 TPHLWHGD-----------KKGYPAPIIDHKQARLRAIEVFKNAK 489
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 134/321 (41%), Gaps = 49/321 (15%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---- 59
G G R +FLLE + +L L+ G L I G P + +L RE + T +
Sbjct: 49 GIPKTGTFRAKFLLESVQNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAIYTAKEA 108
Query: 60 ---EQDCEG-----VKPYQ-SFPTGSHPPRYQPCKTLLNFRDLSGLPPR-PKEDIDFRHV 109
E D E +K Y F Y P RDL R P DFR V
Sbjct: 109 TQEETDVETSLSKKLKVYNIDFEVFWGATLYHP-------RDLPFWVSRLPDVFTDFRKV 161
Query: 110 TFG--TMSESLQREVSL-------FQTVPKPEQ---FHKYPEMDFGDPLIRWLGGETEAL 157
G + + Q ++L F +P+ + F + PE+D + + GGETEAL
Sbjct: 162 VEGKSVIRPAFQEPIALRLPEGLEFGKMPEIYELILFSQLPEVDRRAAFV-FKGGETEAL 220
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFN 215
+LN L + + + L G S S L +GC+S R+ Y + +
Sbjct: 221 QRLNAYLWE-----TDHIKFYKETRNGLLGANYSSKFSPWLAYGCVSPRQIYEEVKKY-- 273
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL- 274
G S + + +L+WR+YF ++ Y ++ K I + E N + L
Sbjct: 274 EAQHGANDSTYWLIFELVWRDYFRFLALK--YGTRLFKTT---GIKYNLELRWNHNRDLF 328
Query: 275 NAWKNGQTGYPFIDAVMRQLR 295
+ W NG+TG PFIDA M++L+
Sbjct: 329 DQWVNGKTGIPFIDANMQELK 349
>gi|409405685|ref|ZP_11254147.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
gi|386434234|gb|EIJ47059.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. GW103]
Length = 497
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 63/251 (25%)
Query: 174 GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNI-TGQL 232
G Y + + P + GP + S L+FG +S+R A +H G+ + + +L
Sbjct: 235 GAYGTARDFPAVKGP-SYLSIHLRFGTVSIRTLARAA---MQAMHAGQGAAGAAVWLSEL 290
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
WR++++ + H+P P I W E + E+ AW G+TGYP +DA M
Sbjct: 291 TWRDFYFMILHHHPRVTDQAFKPEYDAIRW--EQGQHAEELFAAWCEGRTGYPLVDAAMA 348
Query: 293 QLR---------RLLDCTYCVCPVN---------FGRRL--------------------- 313
Q+ R++ ++ + F R L
Sbjct: 349 QINQTGYMHNRLRMVVASFLTKDLGIDWRRGEKYFARHLNDFDLSANNGGWQWASSSGCD 408
Query: 314 -----------------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
DPDG +I+RY+P+L + + I+ PW A + A + ++
Sbjct: 409 AQPYFRIFNPVTQSEKFDPDGKFIRRYLPQLARLSDKRIHAPWTATPDERLSAGVTLGQN 468
Query: 357 YPERIVNHVQA 367
YP IV+H +A
Sbjct: 469 YPRPIVDHAEA 479
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
PV G + D DG+++K+Y+P LR+ P+QYI++PW P +QE+A C I DYP V+H
Sbjct: 404 PVTQGEKFDRDGVFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHA 463
Query: 366 Q 366
Q
Sbjct: 464 Q 464
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 116/317 (36%), Gaps = 55/317 (17%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD----C 63
+G R +A LD L GG+L I +G P + +L +E KL F +D
Sbjct: 45 VGDKRLHAHFSAIAALDDALVQLGGRLLIRRGEPQQVLCQLAQETGAEKLFFNRDYTPDA 104
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
S H CK L+ P E + + + + +
Sbjct: 105 RKRDELVSEVLSRHGVFVHACKDLVLHE--------PGEIMTKQRTPYAVFTPYRR---- 152
Query: 124 LFQTVPKPEQFHKYPEMDFGD----------PLIRWLG--------------GETEALIK 159
++QT+PK F + E D P + G GE A +
Sbjct: 153 VWQTLPKDRPFPQPTEWILFDRLKELPSEPVPTVEAFGRNRPMGTEWEMEQFGERAARKR 212
Query: 160 LNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTI 217
L + L ++I ++K D+ G + S AL G LS+R Y + + +
Sbjct: 213 LQQFLDRDIYTYKE--------KRDMPGVNATSRLSFALNAGTLSIRTVYHRVQEVLASA 264
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ S +LIWRE++ + +P+ P + W NK+ W
Sbjct: 265 RGEQVTSIEAFLTELIWREFYQQVLYFHPHTTNHAYLPQFEEVAW-----ENKKDLFVRW 319
Query: 278 KNGQTGYPFIDAVMRQL 294
G+TGYP +DA M+QL
Sbjct: 320 CQGETGYPIVDAAMKQL 336
>gi|383622627|ref|ZP_09949033.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|448699507|ref|ZP_21699315.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445780215|gb|EMA31115.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 474
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/458 (22%), Positives = 173/458 (37%), Gaps = 119/458 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKL 57
GT +G +R RF E L +L L+ GG LF+ +G P ++ ++ ++ TK
Sbjct: 47 GTEKLGAHRARFRRESLLELRAGLQDRGGDLFVRRGRPETVLPEVAGRVDADAVYAQTKP 106
Query: 58 CFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSES 117
E+ V ++ P R + TL + DL R ++ TF ++
Sbjct: 107 ATEELETEVGVRETLPDDVSFER-RWTHTLYHVSDLPTSYERMQD-------TFTPWRKA 158
Query: 118 LQREVSLFQTVPKPEQFHKYPEMDFGD-----------------PLIRWLGGETEALIKL 160
++RE S+ V P+ P++ GD ++R+ GGE+ +L
Sbjct: 159 VERECSVRDLVAPPDAVPT-PDLPAGDVPTVSEYGLEAPTDDDRAVLRFEGGESAGKRRL 217
Query: 161 NERLSQE--IESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
E +E + +K G S++ SP L GCLS R W +H+
Sbjct: 218 EEYFWEEDRLREYKETRNGLLGAAYSSKFSPWLAA-----------GCLSPR---W-IHE 262
Query: 213 HFNTIHEGRPPSH--FNITGQLIWREYF-YTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ R + + + +L+WR++F + H + N I + ++
Sbjct: 263 EVRRYEDERVSNEDTYWLVFELLWRDFFQFQFCKHGSRF--FHPNGIRD----VEKAWER 316
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQ------------------LRRLLDCTYCVCPVNFGR 311
+ + W NG+TG PF+DA MR+ L L + F
Sbjct: 317 DREAFDRWANGETGIPFVDANMRELNRTGYMSNRGRQNVASFLADALGIDWRWGAAYFEE 376
Query: 312 RL------------------------------------DPDGIYIKRYVPELRQFPIQYI 335
RL DPDG Y+ ++PEL P + +
Sbjct: 377 RLVDYDVASNWGNWAYQAGVGNDSRDNYFDVLSQAEYYDPDGEYVTTWLPELEGVPPEAV 436
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
+ PW+ G + + DYPE I++ ++A E+ Q
Sbjct: 437 HRPWELSEGERAEYGVRPGVDYPEPIID-LEARYEDLQ 473
>gi|448411719|ref|ZP_21576075.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
gi|445669653|gb|ELZ22261.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
Length = 522
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 72/254 (28%)
Query: 183 PDLTGPPTSQ-------SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
P + PP + S L FG LSVR+ Y A+ + E R S + +L W
Sbjct: 227 PGVVSPPAAAAERSSRLSPYLAFGPLSVRQVYRAVEE----APECRGRSMYR--SRLFWN 280
Query: 236 EYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL- 294
++ A P + NP+ + + E P + + AW G+TG+P +DA MR L
Sbjct: 281 RHYSQKLADWPGWADRAVNPVLRGL-FRDEHDP---ELVAAWTEGRTGFPMVDAAMRALV 336
Query: 295 ---------------------------------RRLLDCTYCV--------C-------- 305
R L+D + C
Sbjct: 337 ETGYINFRTRAMVASFFHYVLREWWRRGADFMYRHLIDADPAINYTQWQSQCNLTGVHPV 396
Query: 306 ----PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
P R D DG +++ YVPEL P +++ +P KAPL VQE+A I +DYP +
Sbjct: 397 RIYDPAKQVREYDSDGEFVREYVPELAPLPDEHLAKPGKAPLAVQEEAGVRIGEDYPRPV 456
Query: 362 VN-HVQASLENKQY 374
V+ +A+ QY
Sbjct: 457 VDFERRAAQTRAQY 470
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 129/334 (38%), Gaps = 81/334 (24%)
Query: 120 REVSLFQTVPKPEQFHKY------PEMDFGDPLIRWLGGETEALIKLN-----ERLSQEI 168
++V FQ P + H + E P + LG E AL +L Q
Sbjct: 171 KKVDAFQLTSYPVERHAHRLAPRPQEHRQAVPTLASLGFEATALSQLKLPTGASGAQQLF 230
Query: 169 ESFKSGV--YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF 226
+ F + Y + P + GP + S L+FG +S R H + +G P +
Sbjct: 231 DDFLGRIERYEDTRNFPAVKGP-SYLSVHLRFGTISPRLLARTAH---GLMLQGNPGATT 286
Query: 227 NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
++ +LIWR++++ + H+P+ P I W ES P + AW G+TGYP
Sbjct: 287 WLS-ELIWRDFYFQILHHHPHVVGHSFKPAYDAIQW--ESGPEADALFAAWCEGRTGYPL 343
Query: 287 IDAVMRQLR---------RLLDCTYCV--------------------------------- 304
+DA M Q+ R++ ++ V
Sbjct: 344 VDAAMAQINQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFATHLNDFDLAANNGGWQWA 403
Query: 305 ----C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA-PLGVQEKA 349
C PV+ + DP+G +I+R +P+L P + ++ PW A P+ +Q A
Sbjct: 404 SSSGCDAQPYFRIFNPVSQSEKFDPEGKFIRRCLPQLAGLPTKALHAPWLARPMELQ-GA 462
Query: 350 NCIISKDYPERIVNHVQA---SLENKQYLKKEKA 380
+ YP +V H A +LE +K A
Sbjct: 463 GVRLGDTYPLPVVEHDTARHRTLERYAVVKSAAA 496
>gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
Length = 475
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 80/202 (39%), Gaps = 65/202 (32%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
L G LSVR+ LHD + PP +LIWRE++ H Y++
Sbjct: 245 LAIGALSVRQCMARLHDQHP---KPLPPGREMWMSELIWREFY----QHLIYFESKLSKG 297
Query: 256 ICLNIPWLPE-SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------------------- 295
C + W S N ++AWK GQTGYP +DA MRQL
Sbjct: 298 KCF-LEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLIK 356
Query: 296 ---------------RLLD------------CTYCVC----------PVNFGRRLDPDGI 318
+L+D C C PV+ G R DPDG
Sbjct: 357 DLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDGE 416
Query: 319 YIKRYVPELRQFPIQYIYEPWK 340
++ +++PEL P ++I++PWK
Sbjct: 417 FVCQWIPELAAVPRKFIHQPWK 438
>gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 473
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 109/282 (38%), Gaps = 88/282 (31%)
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
E A+ +L + +Q + Y S + P + G + SA+L G LS R+ L
Sbjct: 206 ENAAIAQLRQFCAQGADG-----YASRRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLA 259
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHNPYYDQMEKNPICLNIPWLPE 265
+G P S + +LIWRE++ + H P+ ++ + W
Sbjct: 260 EQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQPFIRWTKR------VTWQEN 311
Query: 266 SHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV------------ 304
H Y AW+ G+TGYP +DA MRQL R++ ++ V
Sbjct: 312 PH-----YFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGER 366
Query: 305 -----------------------------------CPVNFGRRLDPDGIYIKRYVPELRQ 329
P G R D DG +I++++P LR
Sbjct: 367 YFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRD 426
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
P + I+EPW+ EKA ++ DYP IV+H QA +
Sbjct: 427 IPGKAIHEPWR----WAEKAGVVL--DYPRPIVDHKQARIAT 462
>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
Length = 476
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 91/240 (37%), Gaps = 73/240 (30%)
Query: 190 TSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
TSQ S L G +SVR+ + L+ E S F +L+WRE++ + NP
Sbjct: 238 TSQLSPYLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSL 297
Query: 249 D-QMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
Q+ P NI W N + AW G TG+P IDA MRQL R+L
Sbjct: 298 SKQIAFQPWTENIRW-----RNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRML 352
Query: 299 DCTYCV-----------------------------------------------CPVNFGR 311
++ V P GR
Sbjct: 353 TASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGR 412
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEP--WKAPLGVQEKANCIISKDYPERIVNHVQASL 369
+ DPDG +I+ ++PEL P +YI+ P W G DYP+ IV+H +A +
Sbjct: 413 KFDPDGEFIRHWLPELADVPDRYIHTPSEWAIKTGHY--------LDYPQPIVDHAKARV 464
>gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 510
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 60/150 (40%), Gaps = 54/150 (36%)
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQL---------------------------------- 294
++ L AW +G+TGYPF+DA MR L
Sbjct: 306 HRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRAMLVSFVAYDLWQHWREPALILA 365
Query: 295 RRLLD--------------------CTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
RR +D PV G DP+GI+I+R+VPEL P Y
Sbjct: 366 RRWIDYEPGIHYSQMQMQAGTSGNRTIRIYNPVKQGIDHDPEGIFIRRWVPELAHVPTPY 425
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNH 364
I+ PW QE+A C I +DYP IV+H
Sbjct: 426 IHTPWLLDRHGQERAGCRIGRDYPAPIVDH 455
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/447 (21%), Positives = 155/447 (34%), Gaps = 114/447 (25%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF--- 59
P +G +L LADL R L+ GG L + GS + +L ++ + + +
Sbjct: 46 PALHPLGAAARWWLRGALADLRRNLEKQGGTLLTLSGSAEKLLPQLAKQTDAASVHWHHR 105
Query: 60 -----------------EQDCEGVKPYQSFPTGSHPPR------YQPCKTLLNFRDLSGL 96
EQ+CE + + + Y+ C + +
Sbjct: 106 LHERERAQDNRIRRTLEEQECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAV 165
Query: 97 PPRPKED---IDFRHVTFGTMSESLQREVSLFQTVPK-PEQFHKYPEMDFGDPLIRWLGG 152
P P E + F + +S++ E SL P F K W G
Sbjct: 166 P-EPLEAPSRLSFHAIPASVLSDARLNEDSLCPQAPDWAAGFRKT-----------WEPG 213
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212
E E L + L + + G ++V+ + T + S L G +S R+ + AL
Sbjct: 214 EAEGQEHLEDFLKNSVAGYPRG---RDRVAEEGT---SRLSPYLASGAVSPRQVWAALQK 267
Query: 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEK 272
H H P + +L WRE+ H P +P + W
Sbjct: 268 H--GAHTDGPRIFLS---ELGWREFARYTLYHLPKLPFENLSPKFSGMHWR-----RSAA 317
Query: 273 YLNAWKNGQTGYPFIDAVMRQLRR----------------------------------LL 298
L AW+ GQTG P +DA MRQL + L+
Sbjct: 318 DLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIVGSFLTKHLLIDWKEGDAWFRDTLV 377
Query: 299 DCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELRQFPIQYIY 336
D + +N+ + DP+G YI+++VPELR+ + ++
Sbjct: 378 DADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEKFDPNGDYIRQWVPELRRLSGKALF 437
Query: 337 EPWKAPLGVQEKANCIISKDYPERIVN 363
EPW A EKA + K YP IV+
Sbjct: 438 EPWAAKDEELEKAGVRLGKSYPRPIVD 464
>gi|345874779|ref|ZP_08826579.1| hypothetical protein l11_06600 [Neisseria weaveri LMG 5135]
gi|343970138|gb|EGV38336.1| hypothetical protein l11_06600 [Neisseria weaveri LMG 5135]
Length = 468
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 90/232 (38%), Gaps = 76/232 (32%)
Query: 190 TSQSAA-LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
TSQ AA L G LS R H + +EG +LIWRE++ + HNP
Sbjct: 242 TSQLAAYLNQGMLSARSL---AHRVASISNEGAE----KWLEELIWREFYQQILYHNPDV 294
Query: 249 DQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLD 299
P ++ W N+E + WKNG+TGYP +DA MRQL+ R++
Sbjct: 295 VHQSFRPEYHHLHW-----ENREDWFERWKNGETGYPIVDAAMRQLKACGMMHNRLRMIT 349
Query: 300 CTYCV-------------------------------------C----------PVNFGRR 312
+ V C PV ++
Sbjct: 350 AGFLVKDLLIDWRLGEAWFAEQLLDYDLAANNGNWQWSAGTGCDAQPYFRIFNPVLQSQK 409
Query: 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
DPDG+YI+R++PEL I+ PW A + I + YP +V+H
Sbjct: 410 FDPDGLYIRRHLPELAHLGKDVIHAPWLA-------KDSIDTHGYPAPMVDH 454
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 100/273 (36%), Gaps = 77/273 (28%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPP--TSQSAALKFGCLSVRRF 206
W GE AL +L L + ++ G D P + S +L FG +S +
Sbjct: 201 WTIGENGALERLAIFLKHGLPGYREGR--------DFPARPNVSRLSPSLHFGEISPNQA 252
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+ I G + +L WRE+ Y++ HNP + PW E
Sbjct: 253 W------HGAIAAGSGIDLDHFQSELAWREFSYSLLYHNPGLPEKNLQKSFDRFPW--EE 304
Query: 267 HPNKEKYLNAWKNGQTGYPFID---------AVMRQLRRLLDCTYCV------------- 304
+P L W+ G TGYP +D M R++ ++ V
Sbjct: 305 NPAA---LMRWQQGLTGYPIVDAGMRELWQTGYMHNRIRMVAGSFLVKNLLLHWHEGESW 361
Query: 305 ----------------------C------------PVNFGRRLDPDGIYIKRYVPELRQF 330
C PV G++ D DG Y +RY+PEL +
Sbjct: 362 FRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVTQGQKFDADGSYTRRYLPELARL 421
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
P +Y++ PW+AP+ V A K YPE IV+
Sbjct: 422 PDRYLFSPWEAPVSVLADAGIATGKTYPEPIVD 454
>gi|421879677|ref|ZP_16311138.1| PhrB protein [Leuconostoc citreum LBAE C11]
gi|390446444|emb|CCF27258.1| PhrB protein [Leuconostoc citreum LBAE C11]
Length = 478
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 67/243 (27%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+ G +++R Y A+ I+E +L WR+Y+ + A NP +
Sbjct: 243 SRYLRTGEIAIRTIYQAV------INEPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQS 296
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
P I W N +L W+ GQTG+P +DA MRQL R++ ++
Sbjct: 297 LRPEFQKIAW----RNNHNDFL-LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFL 351
Query: 304 VCPV----------------------NFG-------------------------RRLDPD 316
+ N G ++ DPD
Sbjct: 352 TKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPD 411
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
G +IK++VPEL Q I+EP Q++ + KDYP+ +V H QA L + +
Sbjct: 412 GQFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYE 471
Query: 377 KEK 379
+ K
Sbjct: 472 QSK 474
>gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
Length = 478
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 67/243 (27%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+ G +++R Y A+ I+E +L WR+Y+ + A NP +
Sbjct: 243 SRYLRTGEIAIRTIYQAV------INEPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQS 296
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
P I W N +L W+ GQTG+P +DA MRQL R++ ++
Sbjct: 297 LRPEFQKIAW----RNNHNDFL-LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFL 351
Query: 304 VCPV----------------------NFG-------------------------RRLDPD 316
+ N G ++ DPD
Sbjct: 352 TKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPD 411
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
G +IK++VPEL Q I+EP Q++ + KDYP+ +V H QA L + +
Sbjct: 412 GKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYE 471
Query: 377 KEK 379
+ K
Sbjct: 472 QSK 474
>gi|384082236|ref|ZP_09993411.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB30]
Length = 513
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 298 LDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDY 357
++ PV DP+G++IKR++PEL Q P ++I++PW+ PL +Q + C I DY
Sbjct: 391 INANRMYSPVKQSEDQDPNGVFIKRWIPELSQVPTEWIHQPWRMPLSLQHQVGCRIGADY 450
Query: 358 PERIVNHVQASLENKQYLK 376
PE I + Q + E + LK
Sbjct: 451 PEPIGDPQQLAREARSRLK 469
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/437 (22%), Positives = 166/437 (37%), Gaps = 108/437 (24%)
Query: 13 FRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSF 72
+F+L+ + DL +QL+S GG+L + P + ++L + + +D Y F
Sbjct: 55 LQFMLQSIQDLQQQLQSAGGKLALYHALPEQVVRQLVEQQQIQAVFINRD------YTPF 108
Query: 73 PTGSHPPRYQPCKTL-LNFRDL-SGLPPRPKEDIDFRHVTFGTMSE----SLQREVSLFQ 126
CK L + L L P++ + + + + Q V+L +
Sbjct: 109 SRRRDDELAAVCKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPVALPE 168
Query: 127 TVPKPEQFHKYPE-------MDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
+ K E + +P I+ GG +AL L +RL ++ YL+
Sbjct: 169 VLVKSNFLAAASEFTIDQLDLSVTEPAIK--GGRKQALAIL-DRLGDYVD------YLNT 219
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY 239
+ P L + SA LKFG SVR ++A+ + + H + QL WR++F
Sbjct: 220 RDFPALDAT-SKLSAHLKFGTCSVREVFYAITEQLGSEHP--------LIRQLYWRDFFT 270
Query: 240 TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL----- 294
++ H P ++ W N Y AW +G+TG+P +DA MR+L
Sbjct: 271 HIAYHFPQVFGRAFLEKFADLTW-----DNNPDYFQAWCDGKTGFPIVDAGMRELNATGY 325
Query: 295 -----------------------------RRLLDCTYCVCPVNF---------------- 309
R L+D CV N+
Sbjct: 326 MHNRVRMITASFLVKDLHIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRI 385
Query: 310 ------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+ D D YI R++PEL+ FP + I++ W ++ + C YP I++
Sbjct: 386 LNPWLQQLKFDQDCRYIYRWLPELQAFPPKTIHQ-WD-----KKHSAC----SYPAPIID 435
Query: 364 HVQASLENKQYLKKEKA 380
H + S +K K+ +
Sbjct: 436 HARESQLSKARFKEAAS 452
>gi|421877716|ref|ZP_16309257.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE C10]
gi|372556494|emb|CCF25377.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE C10]
Length = 478
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 67/233 (28%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+ G +++R Y A+ I+E +L WR+Y+ + A NP +
Sbjct: 243 SRYLRTGEIAIRTIYQAV------INEPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQS 296
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
P I W N +L W+ GQTG+P +DA MRQL R++ ++
Sbjct: 297 LRPEFQKIAW----RNNHNDFL-LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFL 351
Query: 304 VCPV----------------------NFG-------------------------RRLDPD 316
+ N G ++ DPD
Sbjct: 352 TKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPD 411
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G +IK++VPEL Q I+EP Q++ + KDYP+ +V H QA L
Sbjct: 412 GQFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARL 464
>gi|328544427|ref|YP_004304536.1| deoxyribodipyrimidine photolyase family protein [Polymorphum gilvum
SL003B-26A1]
gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
SL003B-26A1]
Length = 480
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 102/276 (36%), Gaps = 76/276 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A ERL +E+ G Y + + PDL+ + S L FG +S R+
Sbjct: 196 WHPGEAGA----AERLEHFLEAGLDG-YATLRDRPDLS-HVSRLSPHLHFGEVSPRQVV- 248
Query: 209 ALHDHFNTIHEGRPPS----HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
GR P ++ WRE+ + + H P + PW
Sbjct: 249 ----ARTRFAAGRTPGLERDADKFLAEIGWREFSHHLLYHFPRLPERNWKSTFDAYPWRD 304
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----------- 304
S L W+ GQTGYP +DA MR+L R+L ++ V
Sbjct: 305 SS-----GDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASFLVKHLRLDWRLGE 359
Query: 305 ------------------------------------CPVNFGRRLDPDGIYIKRYVPELR 328
PV GRR DP G Y++R+ PEL
Sbjct: 360 AWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDPGGAYVRRWCPELA 419
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
+ P +++ P+ AP V + A + + YP IV+H
Sbjct: 420 RLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDH 455
>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
Length = 492
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/459 (22%), Positives = 157/459 (34%), Gaps = 144/459 (31%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---------EQD 62
R FL+E L +L ++ + G +L +V G P+++ +L L L + E+D
Sbjct: 56 RLWFLVETLRELQQRWRDAGSRLIVVAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERD 115
Query: 63 CEGVKPYQS------------------FPTGSHPPRYQPCKTLLNFRD------------ 92
+ K Q+ TG P L N+R
Sbjct: 116 RQVAKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVEA 175
Query: 93 ---LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRW 149
L L E I G + QRE+ Q H + M+ L
Sbjct: 176 PTGLCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVE------HGFRGME----LCPC 225
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFY 207
GE A ++++ +F G L+ + + G + SAAL G LS R+ +
Sbjct: 226 RPGEAAA--------AEQLATFVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAW 277
Query: 208 WALHDHFNTIHEGRPPSHFNITGQ-LIWREYF------YTMSAHNPYYDQMEKNPICLNI 260
A + + Q L WRE++ + A+ PY DQ +
Sbjct: 278 CAAQEMKGLARSDEQRQAITVWEQELGWREFYQQALFHFPELANGPYRDQWRR------F 331
Query: 261 PWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----CPV 307
PW N E + + WK+GQTG P IDA MRQL R++ +Y V C
Sbjct: 332 PW-----ENNEDWFDFWKDGQTGMPIIDAAMRQLNETGWMHNRCRMIVASYLVKDLICDW 386
Query: 308 NFGRR------------------------------------------LDPDGIYIKRYVP 325
+G R D DG YI+R+VP
Sbjct: 387 RWGERAFMELEVDGDLAANNGGWQWSASSGMDPKPLRIFNPATQASKFDADGDYIRRWVP 446
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
ELR + + + + + + YPE +VNH
Sbjct: 447 ELRHVNTKDL---------LSGEIAALERRGYPELLVNH 476
>gi|414596902|ref|ZP_11446474.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE E16]
gi|390482266|emb|CCF28535.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE E16]
Length = 478
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 67/243 (27%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+ G +++R Y A+ I+E +L WR+Y+ + A NP +
Sbjct: 243 SRYLRTGEIAIRTIYQAV------INEPESEGQQTFIKELAWRDYYNMIYAMNPQQNTQS 296
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
P I W N +L W+ GQTG+P +DA MRQL R++ ++
Sbjct: 297 LRPEFQKIAW----RNNHNDFL-LWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVASFL 351
Query: 304 VCPV----------------------NFG-------------------------RRLDPD 316
+ N G ++ DPD
Sbjct: 352 TKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFDPD 411
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
G +IK++VPEL Q I+EP Q++ + KDYP+ +V H QA L + +
Sbjct: 412 GQFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEVYE 471
Query: 377 KEK 379
+ K
Sbjct: 472 QSK 474
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 100/448 (22%), Positives = 171/448 (38%), Gaps = 107/448 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---- 59
G G R FL + + +L L+ G +L + G P + ++ +++N + +
Sbjct: 51 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 110
Query: 60 ---EQDCEGVKPYQSFPTGSHPPRY------QPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
E D E Q G Y P + +DL L + ++DI+ + ++
Sbjct: 111 TQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKIS 170
Query: 111 ----FGTMSESLQR-EVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKL---- 160
F S+ L + L T P PE F P+++F ++ + GGET L +L
Sbjct: 171 IRPCFFAPSQLLPSPNIKLELTAPPPEFF---PQINFDHRSVLAFQGGETAGLARLQDYF 227
Query: 161 --NERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
+RL +E + G S++ SP L GCLS R Y + +
Sbjct: 228 WHGDRLKDYKETRNGMVGADYSSKFSP-----------WLALGCLSPRFIYQEVK-RYEQ 275
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN--IPWLPESHPNKEKYL 274
+H+ I +L+WR++F ++ Y +++ LN PW + +
Sbjct: 276 ERVSNDSTHWLIF-ELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQED-----QVRF 327
Query: 275 NAWKNGQTGYPFIDAVMRQLRR----------------------------------LLDC 300
W++GQTGYP +DA MR+L L+D
Sbjct: 328 ELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDY 387
Query: 301 TYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
C N+ ++ DP G Y++ ++PEL+ P I++PW
Sbjct: 388 DVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPW 447
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
Q++ + DYP VN Q+
Sbjct: 448 LLSATEQKQWGVQLGVDYPRPCVNFHQS 475
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/457 (22%), Positives = 167/457 (36%), Gaps = 113/457 (24%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVK 67
I R ++L CL L + + G QL I QG P I K+ LN + + D V+
Sbjct: 47 IAPARVNYMLGCLQHLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNND---VE 103
Query: 68 PYQSFPTGSHPPRYQPCKTLLNFRDLSG------LPPRPKEDID------FRHVTFGTMS 115
PY R + K L + + L P E + ++ T S
Sbjct: 104 PYSK-------ERDKQVKEALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRS 156
Query: 116 ESLQREVSLFQTVPK-----PEQFHKYPEMDFGD-PLIRWLGGETEA--LIKLNERLSQE 167
+ + + +++ K E+ + ++ D P + LG +A L++ E ++E
Sbjct: 157 WVKEEKADIVESIEKLESLSDEEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKE 216
Query: 168 -IESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
+ F S Q +L + S A KFG + +R + A + +
Sbjct: 217 QLNYFSDNAIYSYQEQRNLPAIDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARE 276
Query: 225 HFNITGQLI-WRE------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ Q I WRE YF+ A PY D+ ++ PW N E++ AW
Sbjct: 277 NIQTWQQEIAWREFYQHCLYFFPELAEGPYRDEFKE------FPW-----DNNEQHFQAW 325
Query: 278 KNGQTGYPFIDAVMRQ----------------------------------LRRLLDCTYC 303
G+TGYP +DA MRQ +++L+D
Sbjct: 326 CEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLS 385
Query: 304 VC---------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
P + ++ DPDG YI+ +VPE+ + + P
Sbjct: 386 ANNGGWQWSASSGMDPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTECLVTGKIPP 445
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
L E +C YP+ IV+H Q E K+ K+ K
Sbjct: 446 L---EAHSC----GYPQPIVDHKQQQREFKERYKRIK 475
>gi|343500282|ref|ZP_08738178.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii ATCC 19109]
gi|418480791|ref|ZP_13049846.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342820661|gb|EGU55479.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii ATCC 19109]
gi|384571551|gb|EIF02082.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 471
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 103/270 (38%), Gaps = 80/270 (29%)
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-FYWALH 211
ETE +I+ + +S K Y SN+ P + G T S L G LSVR+ ++
Sbjct: 207 ETEQIIQALRKF----DSDKVTSYHSNRDFPAIDGTST-LSPYLAIGALSVRQCMARVMY 261
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNK 270
+ GR +LIWRE++ ++ P Q + N+ WL N
Sbjct: 262 QQSLPLSGGREVWQ----SELIWREFYQHLAYFEPKLSQGKSFTSWGDNLVWL-----NP 312
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR----------------------------------R 296
++AWK G TGYP +DA MRQL +
Sbjct: 313 TAAIDAWKMGLTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLHVDWRVGEHYFMSK 372
Query: 297 LLD------------CTYCVC----------PVNFGRRLDPDGIYIKRYVPELRQFPIQY 334
L+D C C P G R DPDG +I+R++PEL P +Y
Sbjct: 373 LIDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPDGAFIRRWIPELLSVPDKY 432
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVNH 364
I++P K YPE IV+H
Sbjct: 433 IHQP--------HKWGNAKDLSYPEPIVDH 454
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 171/458 (37%), Gaps = 123/458 (26%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVS 103
Query: 56 KLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV-----T 110
+ F ++ + + + C+ + + G ++D+ F H+
Sbjct: 104 TVAFHEEVASEEK-----SVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDV 158
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPE------------------MDFGDPLIRWLGG 152
+ ++++ + + + PEQ P +D GG
Sbjct: 159 YTQFRKAVEAQGRVRPVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGG 218
Query: 153 ETEALIKLNERL--SQEIESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
ETEAL +L + + ++K GV S + SP L GC+S R
Sbjct: 219 ETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTKFSP-----------WLALGCISPR 267
Query: 205 RFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS---AHNPYYDQMEKNPICLNIP 261
Y + + + S + + +L+WR+YF ++ + +Y ++ ++P
Sbjct: 268 YIYEQIKKY--EVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDK---HVP 322
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------R 296
W + K +AWK G+TG PF+DA MR+L R
Sbjct: 323 WKTDM-----KMFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWR 377
Query: 297 L-------LDCTYCVCPVNFGRRL-------DP-----------------DGIYIKRYVP 325
L L + VC N+G L DP +G Y++++VP
Sbjct: 378 LGAEWFEYLLVDHDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNNGDYVRQWVP 436
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
ELR ++ PW A +++ YP I+
Sbjct: 437 ELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPIIT 474
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 69/272 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE+ AL +L + + + Y ++ P G + S AL FG LS R+ +W
Sbjct: 203 WQAGESAALARL-----EAFAADRLARYAQDRDRPAEPGT-SGLSPALHFGELSPRQVWW 256
Query: 209 ALHDHFNTIHEGRPPSHF-NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH 267
+ G P +L WRE+ + + +P + PW P+
Sbjct: 257 QV---MAAREAGVPEDACETFLSELGWREFAHHLLWSHPDLGDAPVDDRFGAFPWRPDP- 312
Query: 268 PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----CPVNFGRR-- 312
+ +L+AW+ G+TG P +DA M +L R++ ++ V P G R
Sbjct: 313 --GDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTGSFLVKHLRLPWQRGERWF 370
Query: 313 -----------------------------------------LDPDGIYIKRYVPELRQFP 331
DP G Y++R++P L P
Sbjct: 371 RDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERFDPQGRYVRRWLPALANLP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
+YI+ PW AP V +A + DYP +++
Sbjct: 431 DKYIHAPWTAPEAVLRRAGVTLGSDYPCPLID 462
>gi|373488485|ref|ZP_09579149.1| Deoxyribodipyrimidine photo-lyase [Holophaga foetida DSM 6591]
gi|372005430|gb|EHP06066.1| Deoxyribodipyrimidine photo-lyase [Holophaga foetida DSM 6591]
Length = 464
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 103/273 (37%), Gaps = 88/273 (32%)
Query: 169 ESFKSGV--YLSNQVSPDLTGPPTSQSAALKFGCLSVR---RFYWALHDHFNTIHEGRPP 223
E F+ + Y SN+ P + G + S L+FG +S+R RF + G
Sbjct: 216 EGFQEKIDNYKSNRDFPAIDGG-SRLSVHLRFGTISIRELVRF---------ALERGTEG 265
Query: 224 SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTG 283
+ + +LIWRE++ + H P + IPW E E AW G+TG
Sbjct: 266 AQAWLN-ELIWREFYQQLLWHRPEVESHAFRSGYDLIPW--EEGLEAEARFQAWCEGRTG 322
Query: 284 YPFIDAVMRQL----------------------------------RRLLD---------- 299
YP +DA MRQL R LLD
Sbjct: 323 YPLVDAAMRQLLSTGWMHNRLRMVTASFLTKDLGIHWLRGERFFARHLLDFDLAANNGGW 382
Query: 300 ----CTYCVC--------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
T C PV R DP+G +I+RY PEL + + I+ PW
Sbjct: 383 QWAASTGCDAQPWFRIFNPVTQSRNFDPEGEFIRRYCPELEEVSAKQIHAPW-------- 434
Query: 348 KANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
+ DYP IV+H +LE ++ L++ K
Sbjct: 435 ---AVEGVDYPPPIVDH---ALERQRTLQRFKG 461
>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
Length = 433
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 100/459 (21%), Positives = 168/459 (36%), Gaps = 170/459 (37%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-----NFTKLCFEQD------- 62
F+++ L +LD+ LK+ G +L +++G P I K+ + ++T ++D
Sbjct: 53 FMIDSLLELDQDLKTMGSRLHLLKGFPEEIIPKINADAVYMNEDYTPFSRQRDERIKEKV 112
Query: 63 ------CEGV------------KPYQSFP-----TGSHPPRYQPCKTLLNFRDLSGLPPR 99
CE + KPY F P R L N+ ++
Sbjct: 113 KGKLVTCEDLLLTKKRFFLKEGKPYSVFTRFYVDVKDKPVRRPEVNNLKNYGEM------ 166
Query: 100 PKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIK 159
+ +T + E+L + S F+ GG AL
Sbjct: 167 -------KDITDVKLLENLHFQRSSFK------------------------GGRRAALDT 195
Query: 160 LNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHE 219
LN +Q I+ S + P L G T S LKFG LS R Y+++++
Sbjct: 196 LNR--AQTID-------YSLRNFPGLPGT-TRLSPYLKFGVLSPREVYYSVNEE------ 239
Query: 220 GRPPSHFNITGQLIWREYFYTMSAHNPYY--DQMEKNPICLNIPWLPESHPNKEKYLNAW 277
I QL WR++F ++ +NPY ++ C +PW+ N +AW
Sbjct: 240 --------IRRQLYWRDFFTLLAYYNPYVFGHAYKREYDC--VPWV-----NDTNLFSAW 284
Query: 278 KNGQTGYPFIDAVMRQLR---------RLLDCTYCVC----------------------P 306
G+TGYP +DA MR+L R++ + V
Sbjct: 285 TQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLHVDWRWGEKYFATKLVDYDPS 344
Query: 307 VNFG-----------------------RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
VN G ++ DP+ +YIK +VPELR +P
Sbjct: 345 VNNGNWQWVASTGVDRMFRIFNPWLQQKKFDPEAVYIKEWVPELRDL----------SPA 394
Query: 344 GVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382
+ + YP+ IVN+++ + ++Y +K ++ C
Sbjct: 395 DIH-NVYALKVDGYPKPIVNYLEEVRKAREYYEKSRSTC 432
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 106/277 (38%), Gaps = 78/277 (28%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W GE A +L L + S Y +++ PD+ TS+ S L+FG +S R+ +
Sbjct: 145 WQPGERTAQQRLRGFLESAVSS-----YAADRDRPDIDA--TSRLSPHLRFGEISPRQIW 197
Query: 208 WALHDHFNTIHEGRPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
A E RP I ++ WRE+ + +NP P PW
Sbjct: 198 HAAR----FAAEERPALAKGIDKFLSEVGWREFSRHLLYNNPDLATRNLQPSFDPFPWT- 252
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------ 294
+ L AW+ GQTGYP +DA MR+L
Sbjct: 253 ----QDDAALAAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLIDWRQGE 308
Query: 295 ----RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPELR 328
L+D P ++ G + D +G Y++R+VPEL
Sbjct: 309 QWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRRWVPELS 368
Query: 329 QFPIQYIYEPWKA-PLGVQEKANCIISKDYPERIVNH 364
+ P I++PW A PL + E A + + YP IV+H
Sbjct: 369 RLPAGLIHQPWAAKPLELAE-AGVTLGRSYPAPIVDH 404
>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451814516|ref|YP_007450968.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780485|gb|AGF51454.1| DNA photolyase [Synechocystis sp. PCC 6803]
Length = 453
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 100/448 (22%), Positives = 171/448 (38%), Gaps = 107/448 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---- 59
G G R FL + + +L L+ G +L + G P + ++ +++N + +
Sbjct: 15 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 74
Query: 60 ---EQDCEGVKPYQSFPTGSHPPRY------QPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
E D E Q G Y P + +DL L + ++DI+ + ++
Sbjct: 75 TQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKIS 134
Query: 111 ----FGTMSESLQR-EVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKL---- 160
F S+ L + L T P PE F P+++F ++ + GGET L +L
Sbjct: 135 IRPCFFAPSQLLPSPNIKLELTAPPPEFF---PQINFDHRSVLAFQGGETAGLARLQDYF 191
Query: 161 --NERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
+RL +E + G S++ SP L GCLS R Y + +
Sbjct: 192 WHGDRLKDYKETRNGMVGADYSSKFSP-----------WLALGCLSPRFIYQEVK-RYEQ 239
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN--IPWLPESHPNKEKYL 274
+H+ I +L+WR++F ++ Y +++ LN PW + +
Sbjct: 240 ERVSNDSTHWLIF-ELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQED-----QVRF 291
Query: 275 NAWKNGQTGYPFIDAVMRQLRR----------------------------------LLDC 300
W++GQTGYP +DA MR+L L+D
Sbjct: 292 ELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDY 351
Query: 301 TYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
C N+ ++ DP G Y++ ++PEL+ P I++PW
Sbjct: 352 DVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPW 411
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
Q++ + DYP VN Q+
Sbjct: 412 LLSATEQKQWGVQLGVDYPRPCVNFHQS 439
>gi|422808697|ref|ZP_16857108.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
gi|378752311|gb|EHY62896.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 467
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 83/295 (28%)
Query: 129 PKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGP 188
PK E+ ++ EM P++ GE A +L + +I + + P+L
Sbjct: 175 PKYEE--QFAEMTCDLPILD--SGERAANTRLANFIKHDIADYDKA-----RDFPEL-DK 224
Query: 189 PTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYY 248
+ S L+ G +S+R + AL + T EGR +L WR+++ + P
Sbjct: 225 TSHLSRYLRTGEISIRTIWQALQETEAT--EGRA----TFEKELCWRDFYNMIYVSFP-- 276
Query: 249 DQMEKNPICLN---IPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
+ PI N I W N ++ AW+ G+TG+P +DA MRQL+ R
Sbjct: 277 -NQKNEPIQENYRFIEW-----ENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLR 330
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ P
Sbjct: 331 MITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQ 390
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
++ DP G +I++YV EL P +YI++P K VQ++ I+ KDYP +V+H
Sbjct: 391 AQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDH 445
>gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375113619|ref|ZP_09758789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 473
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 93/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W SH Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENSH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 AT 462
>gi|421843422|ref|ZP_16276582.1| deoxyribodipyrimidine photolyase [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411775143|gb|EKS58589.1| deoxyribodipyrimidine photolyase [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 472
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 111/285 (38%), Gaps = 84/285 (29%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-F 206
R++ E A+ +L Q +G Y + P + G + SA+L G LS R+
Sbjct: 201 RFVADEKLAIAQLRHFCQQ-----AAGEYEQQRDFPAIDGT-SRLSASLATGGLSPRQCL 254
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
L + + GR N +LIWRE++ + ++P +C P++ +
Sbjct: 255 NRLLAEQPQALEGGRGSVWLN---ELIWREFYRHLMTYHP--------ALCRYQPFIRWT 303
Query: 267 H----PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV--------- 304
N +L AWK G TGYP +DA MRQL R++ ++ V
Sbjct: 304 DRVQWQNNPTHLQAWKTGSTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRK 363
Query: 305 --------------------------------------CPVNFGRRLDPDGIYIKRYVPE 326
P G + D DG +I+++VPE
Sbjct: 364 GEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIRQWVPE 423
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
LR P + I++PW EKA +S YP IV+H QA L
Sbjct: 424 LRDVPGKAIHDPWSWA----EKAQVTLS--YPRPIVDHKQARLAT 462
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 122/294 (41%), Gaps = 39/294 (13%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R F+ + LAD+ +LK + I G PI+IFQ+++++ TK+ D E
Sbjct: 51 RVSFIHDSLADMHSKLKEMNKGISIFHGEPIAIFQEIEKKYKVTKVYTNHDYE------- 103
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-----SLFQ 126
P + K L F + + +D + ++ V + ++
Sbjct: 104 ------PYALERDKILTAFFEEKAIKFETYKDQVYFEKDEIVKADGDPYMVYTPYKNKWK 157
Query: 127 TVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQ-EIESFKS--GVYLSNQVSP 183
V K ++ +YP D +I + E+ L L + S+ ++ + + G+ S + +
Sbjct: 158 EVFKTKELKQYPSQDHLKSIIEFSSYESCNLKDLGFKKSKIKVAPYMATPGLIESYEDTR 217
Query: 184 DLTGPPTSQSAA---LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYT 240
++ G S L+FG +SVR + + + +LIWRE+F
Sbjct: 218 NIPGNEEGTSKLGPHLRFGTVSVREI----------LKKAIAEKNEVFWSELIWREFFMQ 267
Query: 241 MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+ H P+ P I W N E WKNG+TGYPF+DA MR+L
Sbjct: 268 ILWHFPHTKNASFKPKYDRIEW-----RNNEAEFEKWKNGETGYPFVDAGMREL 316
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/443 (21%), Positives = 163/443 (36%), Gaps = 100/443 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ-- 61
GT +G + +L L L+R L+ G+L + G + + + +E + + +
Sbjct: 47 GTGPLGAAQAWWLHHSLEALNRSLQKRHGRLVLASGEALEVLRAFIKESGAEAVFWNRRY 106
Query: 62 DCEGVK---------PYQSFPTGSHPPR--YQPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
D G+ Q+ S + ++P + + +G P R +R +
Sbjct: 107 DPAGISIDARIKHELEKQAIEARSFGGQLLHEPSRLMTG----NGTPYRVYTPF-WRALE 161
Query: 111 FGTMSE---SLQREVSLFQTVPKPEQFHKYPEM----DF-GDPLIRWLGGETEALIKLNE 162
G E E+ L +P E + + D+ GD + W GE A +L+
Sbjct: 162 GGDEPEPPLEAPAELRLTSQLPTSETLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHA 221
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGR 221
+ +E +K N+ P P TS S L G +S R + D + +
Sbjct: 222 FVEDALEGYKE-----NRDYP--ARPATSMLSPHLALGEISPARIW----DATRGLSQRV 270
Query: 222 PPSHF-NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
P + + ++ WRE+ Y + H P N + W N AW+ G
Sbjct: 271 PAADIVHFRKEIAWREFSYHLLFHFPRLASANWNDRFDGLEWC-----NDSDDFEAWRRG 325
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
TGYP +DA M R++ ++ +
Sbjct: 326 MTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNA 385
Query: 305 --------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
PV G + DP+G Y+K YVPELR+ +YI+ P++AP
Sbjct: 386 ASWQWVAGSGADASPFFRIFNPVLQGEKFDPNGDYVKTYVPELRELGAKYIHRPFEAPKS 445
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
+ ++A + + YP IV+H A
Sbjct: 446 MLDEAGITLGQTYPRPIVDHASA 468
>gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 679
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 69/284 (24%)
Query: 166 QEIESFKSGV---YLSNQVSPDLTGPPTSQSAALKFGCLSVRR-FYWALHDHFNTIHEGR 221
+ +ESF +G Y +N+ D + + S L +G +SVR+ F+ + EGR
Sbjct: 220 RALESFINGSLMEYAANRQKVD-SATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGR 278
Query: 222 PPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+ ++ + +REY +S + P+ + + N+ + P E Y AW+
Sbjct: 279 VEAEESVNLFLRSIGFREYSRYLSFNFPF---THERSLLYNLKFFPWR--VDESYFKAWR 333
Query: 279 NGQTGYPFIDAVMRQLR---------RLLDCTYCV------------------------- 304
G+TGYP +DA MR+L R++ ++CV
Sbjct: 334 QGRTGYPLVDAGMRELWATGWLHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLES 393
Query: 305 ----------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
P G + DP G Y++R++PEL + P ++I+ PW AP
Sbjct: 394 DVLGWQYISGSLPDGHELDRIDNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAP 453
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINK 386
V A + +YP IV A +Q L + AN +K
Sbjct: 454 PSVLRAAGIELGSNYPRPIVEIAAARERLEQALAEMWANEAADK 497
>gi|302877366|ref|YP_003845930.1| deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
Length = 473
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 67/241 (27%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+FG +S+RR A +++ G+ +LIWR+++ H+P Q
Sbjct: 241 SVHLRFGTISIRRV--ASFAYYSGGAGGQV-----WLSELIWRDFYQMQLHHHPQLGQGA 293
Query: 253 KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYC 303
N PN+E AW +TGYP IDA MRQL R++ ++
Sbjct: 294 AFKAQFN----DIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFL 349
Query: 304 VCPVNFGRR-----------------------------------------------LDPD 316
V ++ R D
Sbjct: 350 VKDLHIDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGA 409
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK 376
G +I+RYVPEL P ++I+ PW P Q++ ++ K YP +V+H A + K
Sbjct: 410 GRFIRRYVPELAGCPDKWIHAPWLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFK 469
Query: 377 K 377
Sbjct: 470 A 470
>gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 536
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
PV + DPDG +I+R+VPEL P ++++ PW+AP V+ +A ++ + YP RIV+H+
Sbjct: 403 PVKQSQDQDPDGAFIRRWVPELSGLPAEWLHAPWEAPASVRARAGIVLGQTYPMRIVDHM 462
Query: 366 QASLENKQYL 375
A+ E + +
Sbjct: 463 AAAEEARSRI 472
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 96/458 (20%), Positives = 164/458 (35%), Gaps = 103/458 (22%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL----------CFE 60
+F F+ + L +LD LK+ G +L I GS I +F L ++ + F+
Sbjct: 56 RQFDFVRDSLEELDAALKARGTKLVIRMGSAIDVFSALHQKHGIAAIHAHEETGLQWTFD 115
Query: 61 QDCEGVKPYQSFPTGSHPPRYQP---CKTLLNFRD-----LSGLPPRPKEDIDFRHVTFG 112
+D V+ + R QP + L RD RP+
Sbjct: 116 RD-RAVRRWAR--NAGISLREQPQNGVQRALQSRDGWANQWEAFMRRPRL---------- 162
Query: 113 TMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFK 172
E+L+ + + P P+ F + D R GG A+ L L +
Sbjct: 163 VAPEALKPSAADSEEWPLPQDF----GLGADDCPQRQKGGRMAAVDCLRSFLES-----R 213
Query: 173 SGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWAL----HDHFNTIHEGRPPSHFN 227
Y + SP S+ S L FG +S+R + A H+H + G S +
Sbjct: 214 GRTYQKSMSSPLTAADACSRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGS 273
Query: 228 ITGQLIWREYFY-------TMSAHN--PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWK 278
+L W +F ++ + N P YD + P+ + L AW
Sbjct: 274 FISRLQWHCHFIQKLEDQTSIESRNLHPGYDGLRPEPLA------------GDPRLAAWI 321
Query: 279 NGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
G+TG+PF+DA MR LR + + + G +++ P + +EP
Sbjct: 322 EGRTGFPFLDACMRSLRETGWLNFRMRAMVMG--FASHHLWLDWKQPAEHLAALFTDFEP 379
Query: 339 WKAPLGV---QEKANCIISKDYPERIVNHVQASLEN------------------KQYLK- 376
G+ Q + + RI N V+ S + ++L
Sbjct: 380 -----GIHYPQAQMQSATTGMNTPRIYNPVKQSQDQDPDGAFIRRWVPELSGLPAEWLHA 434
Query: 377 --------KEKANCIINKDYPERIVNHVQASLENKQNV 406
+ +A ++ + YP RIV+H+ A+ E + +
Sbjct: 435 PWEAPASVRARAGIVLGQTYPMRIVDHMAAAEEARSRI 472
>gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B]
gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis
SB2B]
Length = 475
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 112/295 (37%), Gaps = 80/295 (27%)
Query: 144 DP-LIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLS 202
DP L +W G+ AL KL+ G Y N+ P + G +S S L G +S
Sbjct: 199 DPALDKWPVGQDAALEKLSR-----FRELGMGRYGENRDFPAIDGT-SSLSPYLALGVIS 252
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIP 261
R+ AL + F + +L+WRE++ + P + NP+ I
Sbjct: 253 PRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGLSMAKNFNPLGDGIR 312
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------LLDCT 301
W N E AWK+G+TGYP +DA MRQL + L+D
Sbjct: 313 WR-----NDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWR 367
Query: 302 Y------------CVCPVNFG------------------------RRLDPDGIYIKRYVP 325
+ C+ N G + DP+G +I++Y+P
Sbjct: 368 WGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPEGRFIRKYLP 427
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA---SLENKQYLKK 377
EL Q+P + +++ S YP IV H QA +L+ +KK
Sbjct: 428 ELAQWPTRSLHQ--------ASGPGLFDSSGYPSPIVEHTQARVRALDVMAVMKK 474
>gi|209559671|ref|YP_002286143.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131]
gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
NZ131]
Length = 469
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 104/271 (38%), Gaps = 79/271 (29%)
Query: 155 EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF 214
EA +LN + ++ ++ + Q+ P L+ G + +R Y A+
Sbjct: 200 EASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP------FLRIGAIGIRTVYHAVRQAP 253
Query: 215 NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKE 271
N++ + +L WR+ FY M + Y DQ + PI I W+ N
Sbjct: 254 NSLGQA------TFLKELAWRD-FYNM-VYVAYPDQ-KTQPIQKAFSQIEWV-----NNP 299
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVCPVNFGRR------ 312
+ WK G+TGYP +DA M QL+ R++ ++ +C G +
Sbjct: 300 DWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDGRLGEQYFQQQL 359
Query: 313 -------------------------------------LDPDGIYIKRYVPELRQFPIQYI 335
DP G +IK Y+P+L P Y+
Sbjct: 360 IDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPENYL 419
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
EP K P +QE +CII DY + IV+H +
Sbjct: 420 LEPGKMPKNLQESVSCIIGTDYAQPIVDHAK 450
>gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
Length = 515
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 106/291 (36%), Gaps = 74/291 (25%)
Query: 139 EMDFGDPLIRWLGGET--EALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
++ FG + LG T + L E Q I+ + + P + GP + L
Sbjct: 203 DLGFGRSNLSELGIPTGSQGAAALFEDFFQRIDRYDAARNF-----PAVRGP-SYLGVHL 256
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKN-- 254
+FG +S+R+ H F G G+LIWRE+++ + H P+ ++
Sbjct: 257 RFGTVSIRQLAGVAHQLFLQGDAGAAA----WLGELIWREFYFQILVHFPHVHSGGESKS 312
Query: 255 --PICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ----------LRRLLDCTY 302
P I W H ++ AW G+TGYP +DA M Q LR ++
Sbjct: 313 FRPEYDKIQWHHGKH--ADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLRMVVASFL 370
Query: 303 C----------------------------------------------VCPVNFGRRLDPD 316
C PV R DP+
Sbjct: 371 CKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPVTQSERFDPE 430
Query: 317 GIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
G +I+RY+P+L I+ PW A E A + + YP +V+H +A
Sbjct: 431 GKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEA 481
>gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771]
Length = 208
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 61/193 (31%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
++ WRE+ Y + H P N W N + AW+ G TGYP +DA
Sbjct: 3 EIAWREFSYHLLYHFPRLASANWNERFDGFEWR-----NDDDEFRAWRRGMTGYPIVDAG 57
Query: 291 MRQLR---------RLLDCTYCV--------C---------------------------- 305
MRQLR R++ ++ V C
Sbjct: 58 MRQLRRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSG 117
Query: 306 -----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
PV G DP+G Y+ YVPELR+ +YI+ P++AP V + A I+
Sbjct: 118 ADASPFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILG 177
Query: 355 KDYPERIVNHVQA 367
YP +V+H A
Sbjct: 178 HTYPAPMVDHGSA 190
>gi|385803847|ref|YP_005840247.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi C23]
gi|339729339|emb|CCC40585.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi C23]
Length = 478
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 155/435 (35%), Gaps = 100/435 (22%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H G R +++LE +A+L + L I +G P SI +L + ++ + ++ G
Sbjct: 49 HDGNARVQYMLESIAELRSWYRDRDSDLLIARGDPASILPELASTHDVDRVVWNREYSGF 108
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGT------------M 114
QS R Q L D++ R + I F + T
Sbjct: 109 A--QS--------RDQQVADALTEHDIAHCSVR--DSIFFEPGSITTNKGEPYSVYTYFW 156
Query: 115 SESLQREVSLFQTVPKPEQFHKYPEMDFGD--PLIRWLG-GETEALIK---LNERLSQEI 168
+ RE + P + F P+ GD P I LG E A I+ N ++
Sbjct: 157 KKWRDREKNAPIDAPDADMF--VPDEGIGDSLPTIDSLGFEEPTADIQPAGTNAARNRLS 214
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWAL--HDHFNTIHEGRPPSH 225
+ G+Y + + S+ SA L FG + +R Y A + I + S
Sbjct: 215 DFCADGIYRYDDDRDYPSRDAVSRLSADLSFGTIGIRDVYAATVAAAEVDGITDAEAESV 274
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
QL WRE++ + NP I W + L AWK+G+TGYP
Sbjct: 275 EEFQSQLAWREFYTHVLYFNPEVVTENYKSYENGIQWR-----DDPAALQAWKDGETGYP 329
Query: 286 FID---------AVMRQLRRLLDCTYCV-------------------------------- 304
+D A M R++ ++
Sbjct: 330 IVDAGMRQLKSEAYMHNRLRMIVASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQW 389
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P+ G R DPD YIK+YVPELR+ P I+E W L E+A
Sbjct: 390 AASTGTDAQPYFRIFNPMTQGERYDPDAEYIKQYVPELREVPADTIHE-WH-ELSPTERA 447
Query: 350 NCIISKDYPERIVNH 364
+ DYP IV+H
Sbjct: 448 R--LDTDYPAPIVDH 460
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPAPLVDHKQARLATLAAFEAAK 472
>gi|423139164|ref|ZP_17126802.1| FAD binding domain of DNA photolyase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051718|gb|EHY69609.1| FAD binding domain of DNA photolyase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 508
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 275 SASLATGALSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 332
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H YL AW+ G+TGYP +DA MRQL R
Sbjct: 333 PFIRWTKR------VTWQENPH-----YLQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 381
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 382 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 441
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I++PW+ EKA ++ DYP IV+H QA +
Sbjct: 442 GERFDRDGEFIRQWLPALRDLPGKAIHQPWR----WAEKAGVVL--DYPRPIVDHKQARI 495
Query: 370 EN 371
Sbjct: 496 AT 497
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 171/458 (37%), Gaps = 123/458 (26%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVS 103
Query: 56 KLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV-----T 110
+ F ++ + + + C+ + + G ++D+ F H+
Sbjct: 104 TVAFHEEVASEEK-----SVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDV 158
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPE------------------MDFGDPLIRWLGG 152
+ ++++ + + + PEQ P +D GG
Sbjct: 159 YTQFRKAVEAQGRVRPVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGG 218
Query: 153 ETEALIKLNERL--SQEIESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
ETEAL +L + + ++K GV S + SP L GC+S R
Sbjct: 219 ETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTKFSP-----------WLALGCISPR 267
Query: 205 RFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS---AHNPYYDQMEKNPICLNIP 261
Y + + + S + + +L+WR+YF ++ + +Y ++ ++P
Sbjct: 268 YIYEQIKKY--EVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDK---HVP 322
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------R 296
W + K +AWK G+TG PF+DA MR+L R
Sbjct: 323 WNTDM-----KMFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWR 377
Query: 297 L-------LDCTYCVCPVNFGRRL-------DP-----------------DGIYIKRYVP 325
L L + VC N+G L DP +G Y++++VP
Sbjct: 378 LGAEWFEYLLVDHDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNNGDYVRQWVP 436
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
ELR ++ PW A +++ YP I+
Sbjct: 437 ELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPIIT 474
>gi|443244631|ref|YP_007377856.1| deoxyribodipyrimidine photolyase [Nonlabens dokdonensis DSW-6]
gi|442802030|gb|AGC77835.1| deoxyribodipyrimidine photolyase [Nonlabens dokdonensis DSW-6]
Length = 497
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/495 (21%), Positives = 171/495 (34%), Gaps = 152/495 (30%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKL--- 57
M H F F+ + L +++ +L + G L +V+ + + FQKL+ +
Sbjct: 40 MILNDAHYSKRHFNFIKQSLENMNEKLNAVGSSLLVVESNALKAFQKLQSLFKIVNIYSY 99
Query: 58 -------CFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPK--------E 102
+++D E K ++ P ++ + GL R +
Sbjct: 100 QETGLYITYKRDIELAKWFKKNAI--------PWTESISNGVVRGLKNRTQWKEHWIEFM 151
Query: 103 DIDFRHVTFGTM----SESLQREVSLFQTV----PKPEQFHKYPEMDFGDPLIRWLGGET 154
+ DF H F S + S F+TV PK F K GG T
Sbjct: 152 NQDFDHPDFDNSTLFSSTRINLIASEFKTVSLETPKNSIFQK--------------GGTT 197
Query: 155 EALIKLNERLSQEIESFKS-------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
AL L+ I + + S+++SP + S K F
Sbjct: 198 TALRYFESFLTDRINGYNTYYSKPLTSRKHSSRLSPYIAWGNVSMRMVAKKAASCKNDFK 257
Query: 208 WALHDHFNTIHEGRPPSHF----NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWL 263
H H + + R +HF + +L WR S H Y + P+ L
Sbjct: 258 NKRHLH-SFMSRLRWQAHFIEKFEMEHELEWR------SVHKAY--RTLDKPVNL----- 303
Query: 264 PESHPNKEKYLNAWKNGQTGYPFIDAVMR----------QLRRLL--------------- 298
K+ AW+ G+TGYP +DA MR +LR +L
Sbjct: 304 --------KFQQAWREGKTGYPLVDAAMRCLNTTGFINFRLRAMLTGFFTHHLWQPWQDA 355
Query: 299 -----------------------------DCTYCVCPVNFGRRLDPDGIYIKRYVPELRQ 329
+ P+ DP+G++IK++VPEL
Sbjct: 356 SNHLAQQFLDFEPGIHYPQLQMQAGETGINIVRVYNPLKNSLEHDPEGLFIKKWVPELAH 415
Query: 330 FPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH-------------VQASLENKQYLK 376
P+++I+EPWK ++ + + +DYPER+V + +Q L+N K
Sbjct: 416 LPLRFIHEPWKMTALDEQFLDFKLGEDYPERLVENSLSRKRAQDILYGIQKDLKN----K 471
Query: 377 KEKANCIINKDYPER 391
KE I P+R
Sbjct: 472 KESRRIISKHTNPKR 486
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 99/440 (22%), Positives = 160/440 (36%), Gaps = 92/440 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +L + L L + G +L + +G SI ++L E T +
Sbjct: 47 GCWKLGGASRWWLAKSLEALSHDIAQRGARLILRRGDTESILKRLVDESGATAVYV---- 102
Query: 64 EGVKPYQSFPTGSHPPRYQP-CKTLLNFRDLSGLPPRPKEDI----DFRHVTFGTMSESL 118
+ Y+ + G ++ + + F+ G R ED+ + F
Sbjct: 103 --TRGYEPWAKGLEEKLHKSFGGSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVF 160
Query: 119 QREVSLFQTVPKPEQFHKYPEMDFGDPLIRW---------LGGETEALIKLNERLSQ-EI 168
++E S + + P P+ D + W GG EA + ER +Q +
Sbjct: 161 RKEFSAPKALAAPRHLGPVPDAIASDDISDWKLAPTKPDWSGGLAEAW-RPGERGAQLRL 219
Query: 169 ESFKS-GVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHF 226
++F S G+ + L TS+ S L FG +S + A + + H
Sbjct: 220 KNFVSEGLSNYDDGRDRLNAEGTSRLSPHLAFGEISPAACWRAAAEASHQTHSSDGAVE- 278
Query: 227 NITGQLIWREYFYTMSAHNPYYDQMEKNPI---CLNIPWLPESHPNKEKYLNAWKNGQTG 283
+L WRE+ Y + P QM P+ PW S L AW+ G TG
Sbjct: 279 TFLKELAWREFSYALLFQFP---QMPDEPLRDEFAAFPWAKSS-----ANLKAWQRGLTG 330
Query: 284 YPFIDA---------VMRQLRRLLDCTYCV------------------------------ 304
YP +DA M R++ ++
Sbjct: 331 YPVVDAGMRELWATGYMHNRARMIAASFLTKHLLLPWTSGEAWFWDTLVDADLANNAANW 390
Query: 305 -----C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
C PV G + DPDG Y++R+VPEL++ P I++PW A +
Sbjct: 391 QWVAGCGADAAPYFRIFNPVLQGEKFDPDGDYVRRWVPELQRLPSADIHKPWAADATTLK 450
Query: 348 KANCIISKDYPERIVNHVQA 367
+A I K+YP IV+H +A
Sbjct: 451 RAGVAIGKNYPFPIVDHKEA 470
>gi|408374589|ref|ZP_11172274.1| DNA photolyase [Alcanivorax hongdengensis A-11-3]
gi|407765547|gb|EKF73999.1| DNA photolyase [Alcanivorax hongdengensis A-11-3]
Length = 488
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 105/293 (35%), Gaps = 85/293 (29%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE AL +L + + ++ + P L G +S S AL G LSV Y
Sbjct: 204 WQPGEQAALTQLARFADKSLAGYRQ-----QRDFPALDGT-SSLSTALSAGTLSVAACYR 257
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH- 267
A + + G+L WR+++ + A P + + PE+
Sbjct: 258 AAMQAMADAGARDGAACW--VGELAWRDFYRQIMARFPR--------LARGAAFRPETDL 307
Query: 268 ---PNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------------RR-- 296
+ E AW G+TGYP +DA MRQL RR
Sbjct: 308 LQWHDDEALFQAWCQGRTGYPLVDAAMRQLVATGWMHNRLRMLTAMFLSKHLWIDWRRGE 367
Query: 297 ------LLDCTYCV----------------------CPVNFGRRLDPDGIYIKRYVPELR 328
L+D + PV +R DPDG +I RYVPEL
Sbjct: 368 AFFMEHLMDGDFAANNGGWQWSASTGTDAVPYFRVFSPVRQSQRFDPDGKFIARYVPELA 427
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+ I+EPWK PL ++ DYP V H + K+ KA+
Sbjct: 428 HLDNKTIHEPWKQPL---------LAPDYPPPCVPHAGVRERVTERFKQAKAD 471
>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
PB1/+]
gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
Length = 487
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|333893079|ref|YP_004466954.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
Length = 474
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 107/288 (37%), Gaps = 73/288 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A L + +K + P + G + S L FG +S + ++
Sbjct: 201 WKPGEDGAADNLQYFIQHAARKYKDARDI-----PSMNGT-SHLSPHLHFGEVSPNQVWY 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A+ D F T + ++ + +L WRE+ Y + H P N W ++
Sbjct: 255 AIKDRFETSEDKSIDTYLS---ELGWREFSYYLLYHFPTIPTKNFNDKFDKFNWRSDA-- 309
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQL------------------------------RRLL 298
K L AW+ GQTG P +DA MR+L R
Sbjct: 310 ---KSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLISWQEGERWFW 366
Query: 299 DCTY--------------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
DC P+ G + D G Y+++Y PEL P
Sbjct: 367 DCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKFDKQGKYVRKYCPELADLPD 426
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN---HVQASLENKQYLKK 377
+YI++PW AP + + A + YP+ IV+ Q +L+ Q LK+
Sbjct: 427 KYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRALDAFQALKE 474
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/461 (19%), Positives = 158/461 (34%), Gaps = 110/461 (23%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPT 74
+L E L L+ L + GG+L ++ GS + + K+C+ + P + T
Sbjct: 72 WLHESLRALNAALVALGGELTVLHGSESQAIEAFAVAIGAIKVCWNRRYSA--PQRETDT 129
Query: 75 GSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV-TFGTMSESLQREVSLFQTVPKPEQ 133
+ + F P D R F + + + S P P++
Sbjct: 130 AIKTALKERGIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQR 189
Query: 134 FHKYPEMDFGDPLIR-----------------------WLGGETEALIKLNERLSQEIES 170
+ +P D R W GE +L+ L+ +
Sbjct: 190 INFFPVPDNIGVAARVENLSALALQPRTPDWASGLRETWQCGEQAGQTQLDAFLANALTR 249
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNIT- 229
+ SG + + P L+FG LS R+ + H + GR T
Sbjct: 250 YASGRDVPAMQATSRLSP------YLRFGNLSARQVW---HAALSAARVGRHCGDARRTC 300
Query: 230 ----------GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
+L WRE+ Y + H Q+ +PW ++ L AW++
Sbjct: 301 TASSGVDKFLDELGWREFSYYLLYHCAPLHQVNFKRQFDTMPWRADT-----ADLRAWQH 355
Query: 280 GQTGYPFIDAVMRQL----------------------------------RRLLDCTYCVC 305
G+TGYP +DA MR+L L+D
Sbjct: 356 GRTGYPLVDAGMRELWHTGWMHNRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASN 415
Query: 306 PVNF----------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPL 343
P N+ G++ DP G Y++R+VPEL + P ++ PW A
Sbjct: 416 PANWQWVAGSGADAAPYFRIFNPVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQP 475
Query: 344 GVQEKANCIISKDYPERIVNHVQA---SLENKQYLKKEKAN 381
A+ + +DYP +V H QA +L+ ++++ ++
Sbjct: 476 AQLASASVRLGQDYPLPVVPHQQARERALKAMEHMRGRESG 516
>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
Length = 681
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 94/247 (38%), Gaps = 75/247 (30%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ---------LIWREYFYTMSAHNP 246
L FG +SVR+ + HF I + + N G+ + REY MS ++P
Sbjct: 247 LHFGEVSVRKVF-----HFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNHP 301
Query: 247 YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------ 294
Y + PW+ + E Y AW+ G+TGYP +DA MR+L
Sbjct: 302 YSHERPLLGHLRYFPWVVD-----EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
Query: 295 ----------------------RRLLDCT---------YCVCPVNFGRRLD--------- 314
LLD Y + GR D
Sbjct: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFVG 416
Query: 315 ----PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLE 370
P G Y++R++PEL + P ++I+ PW AP V E A + +YP IV A +
Sbjct: 417 YKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVR 476
Query: 371 NKQYLKK 377
+Q L +
Sbjct: 477 LEQALSQ 483
>gi|448681055|ref|ZP_21691201.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445768113|gb|EMA19200.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 534
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 109/280 (38%), Gaps = 74/280 (26%)
Query: 162 ERLSQEIESFKSGVYLSNQVSP-DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEG 220
ERLS E Y N +P D + S L FGCLSVR+ + +H +G
Sbjct: 218 ERLSAFAERIDD--YPRNISAPTDARDGTSGLSPYLAFGCLSVRQVIQYIDEH---APDG 272
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY----LNA 276
R F +L W +++ P + NP+ N E+Y + A
Sbjct: 273 RGKEMF--VSRLFWNKHYEQKLEDWPGWLDTAVNPVFEGF--------NAEQYDPDLVAA 322
Query: 277 WKNGQTGYPFIDAVMRQLRR----------------------------------LLDCTY 302
WK+G+TG+P +DA MR L+ L+D +
Sbjct: 323 WKHGRTGFPMVDASMRCLKETGWLNFRMRAMCASVYYHLLQQPWRIGADWFYHHLIDASA 382
Query: 303 CV--------C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAP 342
+ C P R DPDG +I+R+VPEL P +Y+ +P + P
Sbjct: 383 AINYTQWQSQCGLIGKPALRLYNPRKQVRDQDPDGEFIRRWVPELDSLPDEYLDQPEQTP 442
Query: 343 LGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382
+ VQ I +DYP +V++ A ++ + +A+
Sbjct: 443 VHVQASCGVDIGEDYPHPVVDYDAARQAFQRRYEAVRADA 482
>gi|432552665|ref|ZP_19789396.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE47]
gi|431086950|gb|ELD92966.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE47]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13]
Length = 220
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 61/191 (31%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+L WR+++ + + P E + + W + + L+ WK G+TG+P +DA
Sbjct: 22 ELAWRDFYNMIFHYYPESKTKEIDDKYQKLKW-----NDNQDLLDLWKKGKTGFPIVDAG 76
Query: 291 MRQLR---------RLLDCTYCV------------------------------------- 304
MRQL R+++ ++
Sbjct: 77 MRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHDYDEASNIGGWQWAASVG 136
Query: 305 ----------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
P+ R D G YIK+Y+PEL + I+EPWK QEKA C+I
Sbjct: 137 TDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHEPWKMDDHEQEKAGCVIG 196
Query: 355 KDYPERIVNHV 365
KDYP +V+H
Sbjct: 197 KDYPRPVVDHA 207
>gi|422369015|ref|ZP_16449418.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
gi|432897527|ref|ZP_20108436.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE192]
gi|433027697|ref|ZP_20215572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE109]
gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
gi|431429573|gb|ELH11501.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE192]
gi|431545767|gb|ELI20414.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE109]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWA----EKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
gi|419699576|ref|ZP_14227191.1| deoxyribodipyrimidine photolyase [Escherichia coli SCI-07]
gi|419911562|ref|ZP_14430034.1| deoxyribodipyrimidine photolyase [Escherichia coli KD1]
gi|422382541|ref|ZP_16462701.1| FAD binding domain of DNA photolyase, partial [Escherichia coli MS
57-2]
gi|432380341|ref|ZP_19623298.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE15]
gi|432386111|ref|ZP_19629009.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE16]
gi|432430765|ref|ZP_19673210.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE187]
gi|432440036|ref|ZP_19682391.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE189]
gi|432445149|ref|ZP_19687457.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE191]
gi|432464677|ref|ZP_19706785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE205]
gi|432512912|ref|ZP_19750148.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE224]
gi|432582775|ref|ZP_19819185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE57]
gi|432610388|ref|ZP_19846560.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE72]
gi|432645146|ref|ZP_19880946.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE86]
gi|432654944|ref|ZP_19890657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE93]
gi|432698024|ref|ZP_19933191.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE169]
gi|432731380|ref|ZP_19966218.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE45]
gi|432744644|ref|ZP_19979344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE43]
gi|432758459|ref|ZP_19992962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE46]
gi|432800938|ref|ZP_20034925.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE84]
gi|432842936|ref|ZP_20076357.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE141]
gi|432903049|ref|ZP_20112666.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE194]
gi|432942664|ref|ZP_20139923.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE183]
gi|432970830|ref|ZP_20159708.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE207]
gi|432984346|ref|ZP_20173084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE215]
gi|433012889|ref|ZP_20201267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE104]
gi|433022514|ref|ZP_20210529.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE106]
gi|433037650|ref|ZP_20225266.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE113]
gi|433071764|ref|ZP_20258460.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE129]
gi|433081600|ref|ZP_20268074.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE133]
gi|433100226|ref|ZP_20286336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE145]
gi|433119266|ref|ZP_20304974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE157]
gi|433143294|ref|ZP_20328461.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE168]
gi|433182252|ref|ZP_20366549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE85]
gi|433187502|ref|ZP_20371621.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE88]
gi|433206833|ref|ZP_20390531.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE97]
gi|433323395|ref|ZP_20400744.1| deoxyribodipyrimidine photolyase [Escherichia coli J96]
gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2]
gi|380349280|gb|EIA37553.1| deoxyribodipyrimidine photolyase [Escherichia coli SCI-07]
gi|388393275|gb|EIL54660.1| deoxyribodipyrimidine photolyase [Escherichia coli KD1]
gi|430909617|gb|ELC30983.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE16]
gi|430911450|gb|ELC32736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE15]
gi|430956387|gb|ELC75063.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE187]
gi|430969268|gb|ELC86418.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE189]
gi|430975871|gb|ELC92755.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE191]
gi|430997428|gb|ELD13695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE205]
gi|431044470|gb|ELD54743.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE224]
gi|431119791|gb|ELE22790.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE57]
gi|431151206|gb|ELE52241.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE72]
gi|431183924|gb|ELE83697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE86]
gi|431194338|gb|ELE93603.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE93]
gi|431246512|gb|ELF40776.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE169]
gi|431278288|gb|ELF69282.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE45]
gi|431294926|gb|ELF85103.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE43]
gi|431311423|gb|ELF99586.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE46]
gi|431350896|gb|ELG37699.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE84]
gi|431397464|gb|ELG80920.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE141]
gi|431436579|gb|ELH18094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE194]
gi|431453716|gb|ELH34100.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE183]
gi|431485967|gb|ELH65624.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE207]
gi|431506089|gb|ELH84693.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE215]
gi|431535160|gb|ELI11543.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE104]
gi|431540033|gb|ELI15665.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE106]
gi|431554966|gb|ELI28830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE113]
gi|431592855|gb|ELI63424.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE129]
gi|431605435|gb|ELI74824.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE133]
gi|431622349|gb|ELI91130.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE145]
gi|431648491|gb|ELJ15887.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE157]
gi|431665690|gb|ELJ32404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE168]
gi|431708936|gb|ELJ73438.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE88]
gi|431711340|gb|ELJ75693.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE85]
gi|431732643|gb|ELJ96094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE97]
gi|432348098|gb|ELL42550.1| deoxyribodipyrimidine photolyase [Escherichia coli J96]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|425298869|ref|ZP_18688918.1| DNA photolyase [Escherichia coli 07798]
gi|408221285|gb|EKI45239.1| DNA photolyase [Escherichia coli 07798]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|417288371|ref|ZP_12075656.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW07793]
gi|386247163|gb|EII93336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW07793]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
photolyase subfamily [Dokdonia donghaensis MED134]
Length = 494
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/438 (22%), Positives = 153/438 (34%), Gaps = 115/438 (26%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H F F+ E L DL +L+++ ++ +VQG I +F+KL++ ++ +
Sbjct: 50 HYSERHFNFIKESLQDLQSRLENYDTKILVVQGEVIPVFKKLQQHYTIKRVYSHVETGIR 109
Query: 67 KPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQ 126
K Y RD++ + +DI + + SL V Q
Sbjct: 110 KTYD--------------------RDIAFKVYQQSQDIRWIQFINNGVRRSLSNRVGWVQ 149
Query: 127 T------------VPKP------------EQFHKYPEMDFGDPLIRWLGGETEALIKLNE 162
VP+ EQ+ + + GG T L +
Sbjct: 150 GWEWWMTEPQRIFVPQSGDLVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDS 209
Query: 163 RLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGR 221
L I+++ + + P L S+ S + +G LSVR + + +
Sbjct: 210 FLRDRIKNYNAHI-----SKPLLARKSCSRLSPYIAWGNLSVREVW----QRAKKLRQAS 260
Query: 222 PPSH--FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKN 279
P T +L W +F D ME + +N + + Y AW+
Sbjct: 261 PYKRQIDGFTSRLRWSAHFIQKFEME---DTME--FVSVNRGFHSLKKVSNPVYAKAWQE 315
Query: 280 GQTGYPFIDAV-------------MRQL---------------------RRLLD------ 299
G+TGYP +DA MR L R+ LD
Sbjct: 316 GKTGYPLVDACMRCLVETGYLNFRMRALTLSFFTHNLWQPWQDASAFLARQFLDFEPGIH 375
Query: 300 --------------CTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGV 345
PV DP+G +IK+++PELR+ P+ YI+EPW L
Sbjct: 376 YPQIQMQAGETGINMLRIYNPVKNSYEHDPEGEFIKKWIPELREVPLSYIHEPWTMSLLE 435
Query: 346 QEKANCIISKDYPERIVN 363
Q+ N I KDYP IVN
Sbjct: 436 QQFCNTTIGKDYPAPIVN 453
>gi|403349181|gb|EJY74032.1| putative bacterial cryptochrome [Oxytricha trifallax]
Length = 593
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/457 (24%), Positives = 170/457 (37%), Gaps = 125/457 (27%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL-KRELNFT-----KL 57
GT G R RFL+E + + L+ G +L + P KL +E + T ++
Sbjct: 121 GTQKCGLVRQRFLIETVENFRHNLEKMGSKLLVSMERPEEFIPKLIDQECDNTIVYQDEI 180
Query: 58 CFEQ---------DCEG--VKPYQS----------FPTGSHPPRYQPCKTLLNFRDLSGL 96
C E+ C+G VK + F P Y + + + L
Sbjct: 181 CSEEMAVERAVQKSCKGANVKTFWGSSVYHVDDLGFEIDHLPQVYTKFREVCGRVPVRSL 240
Query: 97 PPRPKE-DIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPE-MDFGD---PLIRWLG 151
P PK D+ F M+++ ++F P+ E F E + G +I ++G
Sbjct: 241 FPNPKNGDLPFIENPSDIMTKA-----TIFS--PQLEDFGFTKEQIALGKDKRSVIEFIG 293
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVS------PDLTGPPTSQ--SAALKFGCLSV 203
GE AL + FK VY + VS +L G S S + G LS
Sbjct: 294 GEDAAL-----------KRFKEYVYETQAVSHYADTRNELLGENVSSRFSPWMAHGSLSP 342
Query: 204 RRFYWALHDHFNTIHEGRPPSHFNITGQLIWREY--FYTMSAHNPYYD----QMEKNPIC 257
R Y + + + + ++ S + ++ WR++ F+ + N + E+
Sbjct: 343 RYIYHKVKE-YESKNQLTEKSTKKLIDEVFWRDWCRFWALKYGNNIFGVYGFDYERGSKR 401
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVN 308
PE + W+ G TG P IDA MR+L R + +Y V +N
Sbjct: 402 YQWTTNPE-------IVRRWRQGTTGMPLIDAFMRELNFGGFMSNRGRQIVASYLVLDLN 454
Query: 309 ----FG----------------------------------------RRLDPDGIYIKRYV 324
FG R D +G +IK +V
Sbjct: 455 QDWRFGAHHFEEKLIDHDVHSNYASWNFAAGIGPSKVLQFNVQKQSRDHDKNGEFIKTWV 514
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
PELR P++YI+EPW VQE+ II KDYP+ I
Sbjct: 515 PELRNVPLEYIHEPWTMSSMVQEECGVIIGKDYPKPI 551
>gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88]
gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
gi|386598434|ref|YP_006099940.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
gi|386605390|ref|YP_006111690.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
gi|416337796|ref|ZP_11674110.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
gi|419945326|ref|ZP_14461772.1| deoxyribodipyrimidine photolyase [Escherichia coli HM605]
gi|422359050|ref|ZP_16439699.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
gi|422748275|ref|ZP_16802188.1| DNA photolyase [Escherichia coli H252]
gi|422753323|ref|ZP_16807150.1| DNA photolyase [Escherichia coli H263]
gi|422839181|ref|ZP_16887153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H397]
gi|432357002|ref|ZP_19600249.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE4]
gi|432361474|ref|ZP_19604659.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE5]
gi|432572651|ref|ZP_19809142.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE55]
gi|432586956|ref|ZP_19823327.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE58]
gi|432596598|ref|ZP_19832881.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE62]
gi|432753455|ref|ZP_19988022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE22]
gi|432777594|ref|ZP_20011845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE59]
gi|432786383|ref|ZP_20020549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE65]
gi|432819975|ref|ZP_20053689.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE118]
gi|432826190|ref|ZP_20059846.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE123]
gi|433004183|ref|ZP_20192621.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE227]
gi|433011392|ref|ZP_20199797.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE229]
gi|433152807|ref|ZP_20337774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE176]
gi|433162508|ref|ZP_20347267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE179]
gi|433167517|ref|ZP_20352185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE180]
gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
S88]
gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252]
gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263]
gi|371611202|gb|EHN99728.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H397]
gi|388415881|gb|EIL75789.1| deoxyribodipyrimidine photolyase [Escherichia coli HM605]
gi|430879812|gb|ELC03143.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE4]
gi|430889992|gb|ELC12639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE5]
gi|431110989|gb|ELE14906.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE55]
gi|431123428|gb|ELE26166.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE58]
gi|431133501|gb|ELE35491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE62]
gi|431305065|gb|ELF93581.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE22]
gi|431330194|gb|ELG17476.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE59]
gi|431341512|gb|ELG28519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE65]
gi|431370977|gb|ELG56770.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE118]
gi|431374386|gb|ELG59978.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE123]
gi|431517504|gb|ELH95026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE227]
gi|431519604|gb|ELH97056.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE229]
gi|431678188|gb|ELJ44196.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE176]
gi|431691178|gb|ELJ56638.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE179]
gi|431693517|gb|ELJ58930.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE180]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|433197274|ref|ZP_20381199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE94]
gi|431725146|gb|ELJ89056.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE94]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a]
gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
ED1a]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
YPIII]
gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
YPIII]
Length = 487
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|365901755|ref|ZP_09439584.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
gi|365417509|emb|CCE12126.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
Length = 480
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/443 (21%), Positives = 155/443 (34%), Gaps = 110/443 (24%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG--- 65
G +R+ +L + L L L++ GG+L + +G+P + + L E N + + +
Sbjct: 50 GASRW-WLAQSLRSLQASLRAVGGELVLRRGAPADVLRALASETNAAAVFWNDVAQAPQR 108
Query: 66 --------VKPYQSFPTGSHPPRYQPCKTLLNFRDLSGL---------------PPRPKE 102
+ S P +L +D GL PP P
Sbjct: 109 AVAAEVEEALAALGIESRSFPDDLLVDPAMLRAKDGRGLRVFTPFWKRVLAMGDPPAPLP 168
Query: 103 DIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPL-IRWLGGETEALIKLN 161
G S +++ ++ L T P D+ L RW GE A +L
Sbjct: 169 APRSLPPVAGIASLAVE-DLQLEPTRP-----------DWAGGLRARWQPGEAAAQQRLA 216
Query: 162 ERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAA-LKFGCLSVRRFYWALHDHFNTIHEG 220
L Q ++ Y +++ PDL TS A L+FG + R+ W + H
Sbjct: 217 TFLGQTAKT-----YAADRDRPDLDA--TSHLAPHLRFGEIGPRQV-WHAARFAASEHPA 268
Query: 221 RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNG 280
+ +L WRE+ + P + PW + L +W+ G
Sbjct: 269 QAAGIDKFLSELGWREFSRQLLYDRPDLATCNLQTSFDDFPWR-----DDAPALASWQRG 323
Query: 281 QTGYPFIDA---------VMRQLRRLLDCTYCV--------------------------- 304
+TGYP +DA M R++ ++ V
Sbjct: 324 ETGYPIVDAGMRQLWHSGTMHNRVRMVVASFLVKHLLIDWRAGEQWFWDTLVDADPANNP 383
Query: 305 --------C------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLG 344
C PV G + DPDG Y++R+VP L + P I++PW+A
Sbjct: 384 AGWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGAYVRRWVPGLAKLPAPLIHQPWRAAPL 443
Query: 345 VQEKANCIISKDYPERIVNHVQA 367
A + + YP IV+H +A
Sbjct: 444 ELASAGIALGRTYPAPIVDHKRA 466
>gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 246
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 73/231 (31%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQME 252
S L+ G +S+R + AL + T EGR +L WR+++ + P +
Sbjct: 8 SRYLRTGEISIRTIWQALQETEAT--EGRA----TFEKELCWRDFYNMIYVSFP---NQK 58
Query: 253 KNPICLN---IPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDC 300
PI N I W N ++ AW+ G+TG+P +DA MRQL+ R++
Sbjct: 59 NEPIQENYRFIEW-----ENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITA 113
Query: 301 TYCV-----------------------------------------------CPVNFGRRL 313
++ P ++
Sbjct: 114 SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKF 173
Query: 314 DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
DP G +I++YV EL P +YI++P K VQ++ I+ KDYP +V+H
Sbjct: 174 DPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDH 224
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|365105363|ref|ZP_09334610.1| deoxyribodipyrimidine photo-lyase [Citrobacter freundii 4_7_47CFAA]
gi|363643378|gb|EHL82696.1| deoxyribodipyrimidine photo-lyase [Citrobacter freundii 4_7_47CFAA]
Length = 472
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 116/295 (39%), Gaps = 86/295 (29%)
Query: 136 KYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAA 195
YP+ DF ++ E A+++L Q +G Y + P + G + SA+
Sbjct: 191 SYPQQDFDTQ--QFPAEEKLAIVQLRHFCQQ-----AAGEYEQLRDFPAIDGT-SRLSAS 242
Query: 196 LKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKN 254
L G LS R+ L + + +G N +LIWRE++ + ++P
Sbjct: 243 LATGGLSPRQCLNRLLVEQPQALEDGAGSVWLN---ELIWREFYRHLMTYHP-------- 291
Query: 255 PICLNIPWLPESH----PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCT 301
+C P++ + N +L AWK G TGYP +DA MRQL R++ +
Sbjct: 292 SLCRYQPFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITAS 351
Query: 302 YCV-----------------------------------------------CPVNFGRRLD 314
+ V P G + D
Sbjct: 352 FLVKDLLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFD 411
Query: 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
DG +I+++VPELR P + I+EPW EKA +S YP IV+H QA L
Sbjct: 412 RDGEFIRQWVPELRDVPGKAIHEPWSWA----EKAQVTLS--YPRPIVDHKQARL 460
>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
32953]
gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
pseudotuberculosis IP 32953]
Length = 487
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227119239|ref|YP_002821134.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
Length = 469
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L E + ++ + Q
Sbjct: 180 ALAELVWHPEQAFDYPRID-STP---WAADFETVRAQLREFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQAWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWAYP-----AVNSVL---YPARLVDHKQ 455
>gi|379057133|ref|ZP_09847659.1| deoxyribodipyrimidine photo-lyase [Serinicoccus profundi MCCC
1A05965]
Length = 454
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 72/206 (34%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
++ WRE++ + NP + + +P + P + + AWK G+TGYP +DA
Sbjct: 262 EIAWREFYADVLLQNPRSAWAD---LRDALPGMRYDEP--QDAIEAWKEGRTGYPIVDAG 316
Query: 291 MRQLR----------------------------------RLLDCTYC------------- 303
MRQLR RL+D
Sbjct: 317 MRQLREVGWMHNRVRMITASFLTKDLHVWWPTGARWFLDRLVDGDIASNNHGWQWVAGTG 376
Query: 304 ---------VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIIS 354
PV G + DP G Y++R++PELR + ++PWKA G +
Sbjct: 377 TDASPYFRVFNPVTQGEKFDPTGDYVRRWLPELRHLSGKAAHQPWKADDG--------YA 428
Query: 355 KDYPERIVNHVQASLENKQYLKKEKA 380
DYPERIV+H + E K+ L + +A
Sbjct: 429 HDYPERIVDHAE---ERKEALSRYEA 451
>gi|417083169|ref|ZP_11951305.1| deoxyribodipyrimidine photolyase [Escherichia coli cloneA_i1]
gi|355353037|gb|EHG02210.1| deoxyribodipyrimidine photolyase [Escherichia coli cloneA_i1]
Length = 472
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|386824611|ref|ZP_10111744.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
gi|386378568|gb|EIJ19372.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
Length = 476
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 113/315 (35%), Gaps = 90/315 (28%)
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
RE P F YP G GE AL +L ++++ YL
Sbjct: 177 REGGALPVSAAPAAF-DYPSAGVGADFP---AGEEAALQRLRVFCREQVQD-----YLQQ 227
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY 239
+ P + G +S S L G LS R+ + L + E F +LIWRE++
Sbjct: 228 RDFPAIAGT-SSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYR 286
Query: 240 -------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
+ H P+ + +K + W + + L AW+ G TGYP +DA MR
Sbjct: 287 HLMVAYPALCRHRPFIEWTDK------VRWR-----DNDALLLAWQQGATGYPIVDAAMR 335
Query: 293 QLR---------RLLDCTYCV--------------------------------------- 304
QL R++ ++ V
Sbjct: 336 QLNKTGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 305 --------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
P G R DP G +I++++PEL P +++P++ Q + D
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVPDNDLHQPYRWAEKQQR------TLD 449
Query: 357 YPERIVNHVQASLEN 371
YP IV+H QA LE
Sbjct: 450 YPLPIVDHKQARLET 464
>gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA206]
gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA206]
Length = 382
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 130 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 186
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 187 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 235
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 236 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 295
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK +KA
Sbjct: 296 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWK----WAQKA 351
Query: 350 NCIISKDYPERIVNHVQASL 369
+ DYP+ IV+H +A L
Sbjct: 352 GMTL--DYPQPIVDHKEARL 369
>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|386628250|ref|YP_006147970.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|386633170|ref|YP_006152889.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|386638069|ref|YP_006104867.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|422365262|ref|ZP_16445764.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|432435293|ref|ZP_19677694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|432455579|ref|ZP_19697780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|432494518|ref|ZP_19736336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|432503357|ref|ZP_19745094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|432522802|ref|ZP_19759941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|432567488|ref|ZP_19804015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|432591767|ref|ZP_19828096.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|432606534|ref|ZP_19842729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|432650177|ref|ZP_19885939.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|432782556|ref|ZP_20016742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|432977374|ref|ZP_20166199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|432994445|ref|ZP_20183061.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|432998863|ref|ZP_20187403.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|433057009|ref|ZP_20244093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|433086323|ref|ZP_20272720.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|433114600|ref|ZP_20300416.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|433124259|ref|ZP_20309848.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|433138278|ref|ZP_20323565.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|433148106|ref|ZP_20333172.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|433211578|ref|ZP_20395193.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|442606929|ref|ZP_21021724.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|355419149|gb|AER83346.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|355424069|gb|AER88265.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|430966872|gb|ELC84235.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|430984902|gb|ELD01519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|431028034|gb|ELD41079.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|431042359|gb|ELD52851.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|431054922|gb|ELD64491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|431103321|gb|ELE07991.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|431133211|gb|ELE35209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|431140433|gb|ELE42204.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|431193548|gb|ELE92884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|431332268|gb|ELG19511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|431482478|gb|ELH62181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|431509446|gb|ELH87697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|431514432|gb|ELH92274.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|431573996|gb|ELI46785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|431609359|gb|ELI78684.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|431637100|gb|ELJ05219.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|431649572|gb|ELJ16919.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|431665247|gb|ELJ31974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|431676999|gb|ELJ43082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|431736233|gb|ELJ99575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|441712236|emb|CCQ07701.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
Length = 472
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|422378314|ref|ZP_16458537.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|432470086|ref|ZP_19712139.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|432712376|ref|ZP_19947426.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|433076876|ref|ZP_20263440.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|431000153|gb|ELD16227.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|431259327|gb|ELF51701.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|431600596|gb|ELI70264.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
Length = 472
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 83/260 (31%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L + EG P S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGSVW--LNEL 276
Query: 233 IWRE-------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
IWRE Y+ ++ H P+ ++ + W +S+P +L AW+ G+TGYP
Sbjct: 277 IWREFYRHLMTYYPSLCKHRPFIAWTDR------VQW--QSNP---AHLKAWQEGKTGYP 325
Query: 286 FIDAVMRQLR---------RLLDCTYCV-------------------------------- 304
+DA MRQL R++ ++ V
Sbjct: 326 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 385
Query: 305 ---------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKA 349
P G + D +G +I++++PELR P + ++EPWK EK
Sbjct: 386 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWK----WAEKT 441
Query: 350 NCIISKDYPERIVNHVQASL 369
++ DYP+ IV+H +A L
Sbjct: 442 G--VTLDYPQPIVDHKEARL 459
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 106/288 (36%), Gaps = 78/288 (27%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWTDGLVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
I++PW+ Q+ DYP +V+H QA L + K
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARLATLAAFEAAK 472
>gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter sp. 4H-3-7-5]
gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter sp. 4H-3-7-5]
Length = 510
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 100/482 (20%), Positives = 176/482 (36%), Gaps = 117/482 (24%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF----------TK 56
H F F+ E L +L ++LK+ ++ I+ +S F++L + +
Sbjct: 58 HYSDRHFNFIKESLLNLQKELKAFNTKILIIHDEVVSAFKELIKHYKIHTVFSHQETGLR 117
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLN-----FRDLSG-------------LPP 98
+ +++D + S ++ + N R+ G +P
Sbjct: 118 VTYDRDLALEAYANNLKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPF 177
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
+PK++ + ++ ++ VSL + P F K GG T A+
Sbjct: 178 QPKKNQLLSIEDINALEDNFKK-VSLQTSASSP--FQK--------------GGTTMAM- 219
Query: 159 KLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTI 217
L+ + + Y + P L S+ S + +G +S+R+ Y +
Sbjct: 220 ---RYLTSFLHDNRYLNYAKHISKPSLARKSCSRLSPYIAWGNVSIRQVYQEAKHFRESS 276
Query: 218 HEGRPPSHFNITGQLIWREYF---YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYL 274
R F T +L W+ +F + M D ME + +N + S KY
Sbjct: 277 KNKRAIDGF--TSRLRWQAHFIQKFEME------DSME--FVSVNKGYHKLSKNVNVKYQ 326
Query: 275 NAWKNGQTGYPFIDAVMR----------QLRRLL-------------DCTYCVC------ 305
AWK G+TGYP +DA MR ++R + D TY +
Sbjct: 327 KAWKEGKTGYPLVDACMRCLCETGYLNFRMRAMTLSFFTHNLWQPWQDATYHLAQQFLDF 386
Query: 306 -------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
PV D DG +IK+++PEL P+ YI+EPW
Sbjct: 387 EPGIHYPQIQMQAGETGINMLRIYNPVKNSYEHDEDGEFIKKWIPELVNVPVAYIHEPWT 446
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASL 400
Q+ N +I +DYP I++ + + L K K + ++ +D + H A+
Sbjct: 447 MSALEQQFCNTVIGEDYPAPIIDIKKTAKHAGDVLWKLKDDNMVKRDAYRILRRHTLANR 506
Query: 401 EN 402
N
Sbjct: 507 NN 508
>gi|424590980|ref|ZP_18030413.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
gi|408033486|gb|EKG70033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
Length = 469
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L E + ++ + Q
Sbjct: 180 ALAELVWHPEQAFDYPRID-STP---WAADFETVRAQLREFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQAWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
Length = 472
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 94/238 (39%), Gaps = 78/238 (32%)
Query: 193 SAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
SA+L G LS R+ L + + +G N +LIWRE++ + ++P
Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQALEDGAGSVWLN---ELIWREFYRHLMTYHP----- 291
Query: 252 EKNPICLNIPWLPESH----PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
+C P++ + N +L AWK G TGYP +DA MRQL R++
Sbjct: 292 ---ALCRYQPFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMI 348
Query: 299 DCTYCV-----------------------------------------------CPVNFGR 311
++ V P G
Sbjct: 349 TASFLVKDLLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 408
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
+ D DG +I+++VPELR P + I+EPW EKA +S YP IV+H QA L
Sbjct: 409 KFDRDGEFIRQWVPELRDVPGKAIHEPWSWA----EKAQVTLS--YPRPIVDHKQARL 460
>gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
Length = 465
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 97/253 (38%), Gaps = 80/253 (31%)
Query: 172 KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITG 230
+S Y +++ P + G + S L G LSVR+ L++ + EGR
Sbjct: 212 RSDDYQADRDFPSIEGT-SRLSLYLAIGALSVRQCMARLLYEQILPLSEGRQ----TWLS 266
Query: 231 QLIWREYFYTMSAHNPYYDQMEKN-PICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
+LIWRE++ + P + E P ++ W N EK + AWK G TGYP +DA
Sbjct: 267 ELIWREFYQHLIYFEPKLSRGESFLPWGRHLTW-----QNDEKRIQAWKEGMTGYPIVDA 321
Query: 290 VMRQLR----------------------------------RLLD------------CTYC 303
MRQL +L+D C
Sbjct: 322 AMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIGEDYFMSKLIDGEYSANNGGWQWCAST 381
Query: 304 VC----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP--WKAPLGVQEKANC 351
C P G R DP G +++ +VPEL+ P +YI++P W GV
Sbjct: 382 GCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPELKNVPDKYIHQPSKWANAKGVS----- 436
Query: 352 IISKDYPERIVNH 364
YP IV+H
Sbjct: 437 -----YPSPIVDH 444
>gi|453362943|dbj|GAC81211.1| deoxyribodipyrimidine photo-lyase [Gordonia malaquae NBRC 108250]
Length = 442
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 115/301 (38%), Gaps = 94/301 (31%)
Query: 126 QTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDL 185
Q VP+P G PL GET AL + ++ L+ ++ Y +N+ PDL
Sbjct: 170 QDVPRPA----------GKPLA--PAGETAALDRWHDFLTDDLAD-----YGTNRDRPDL 212
Query: 186 TGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHN 245
+ SA LK GCL R LHD + +G +L WRE++ + H
Sbjct: 213 D-RTSRLSAYLKTGCLHPRTL---LHDMRSRTDDGAA----KFRSELCWREFYADVLHHR 264
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P +E N +P ++ + ++ AW G+TGYP +DA MRQL R
Sbjct: 265 PDSAYIEFNEKFRRMP--HDTGSDAQEAFRAWCEGRTGYPIVDAGMRQLAAEGWMHNRVR 322
Query: 297 LLDCTYCV----CPVNFGRR---------------------------------------- 312
++ ++ P +G R
Sbjct: 323 MIVASFLTKDLHLPWQWGARHFMDFLIDGDLASNQHGWQWVAGCGTDASPYFRVFNPTTQ 382
Query: 313 ---LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
DP G Y++R++PELR P + +++P G YPE IV+H L
Sbjct: 383 GEKFDPTGDYVRRWIPELRSVPGKKVHKPTGDRPG-----------SYPEPIVDHAAERL 431
Query: 370 E 370
+
Sbjct: 432 D 432
>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 504
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 93/441 (21%), Positives = 157/441 (35%), Gaps = 88/441 (19%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--GVKPY 69
R FL L +L +L GG L + + L REL+ + D E +
Sbjct: 60 RIEFLHASLTELHEELVKLGGALIVRHARAVEAIPALARELDVEAVFINHDYEPQAIARD 119
Query: 70 QSFPTG--SHPPRYQPCKTLLNFRD-----LSGLPPR---PKEDIDFRHVTFGTMSESLQ 119
+ T H K + F + L+G P P ++ + + F S
Sbjct: 120 AAIATALQQHDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFN----SSD 175
Query: 120 REVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE--ALIKLNERLS---QEIESFKSG 174
V + P ++F P P + LG A +K+ +S Q +++F
Sbjct: 176 VHVRAYPVEPLADRFAVSPVAHVM-PTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFMER 234
Query: 175 V--YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+ Y + P + GP + S L+FG +S+R + + + + +L
Sbjct: 235 IDKYKQTRDFPAIKGP-SYLSVHLRFGTVSIRHLARRACEAARIAADASGANTW--LAEL 291
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292
+WR++++ + H+P P I W E+ P + AW +G+TGYP +DA M
Sbjct: 292 VWRDFYFMILQHHPRVVHGAFKPDYDAIQW--ETGPAADALFQAWCDGRTGYPLVDAAMA 349
Query: 293 QL-------RRLLDCTYCVC---------------------------------------- 305
Q+ RL T C
Sbjct: 350 QINQTGYMHNRLRMVTACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCD 409
Query: 306 ---------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKD 356
P+ + D DG +I+RY+P+L Q + I+ PW + A + +
Sbjct: 410 AQPYFRIFNPITQSEKFDTDGRFIRRYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVN 469
Query: 357 YPERIVNHVQASLENKQYLKK 377
YP +V H + KQ L +
Sbjct: 470 YPLPVVQH---DVARKQTLAR 487
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 111/288 (38%), Gaps = 73/288 (25%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE A L + + +K G + P G + S L FG +S + ++
Sbjct: 201 WSPGEDGAADNLADFIENSARKYKDGRDI-----PSANGT-SRLSPHLHFGEVSPNQVWY 254
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
A+ D F + ++ + +L WRE+ Y + H P N PW ++
Sbjct: 255 AIKDKFGNSEDKSIETYLS---ELGWREFSYYLLFHFPTLPNKNFNEKFDKFPWRTDA-- 309
Query: 269 NKEKYLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV--------------- 304
K L AW+ G TG P +DA M R++ ++ V
Sbjct: 310 ---KALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNLLLSWHEGERWFW 366
Query: 305 --------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPI 332
P+ G + D G Y+++Y PEL++
Sbjct: 367 DTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYVRKYCPELKKLSD 426
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVN---HVQASLENKQYLKK 377
+YI++PW+AP + + A + K+YP+ IV+ Q +L+ Q LK+
Sbjct: 427 KYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 474
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 104/278 (37%), Gaps = 78/278 (28%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYW 208
GE AL +L ++++ ++ DL P + S L G LS R+ +
Sbjct: 204 AGEDAALQRLRRFCREQVQDYRQ--------YRDLPAVPGTSCLSPYLVLGVLSPRQCFN 255
Query: 209 ALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
L + E F +LIWRE++ + P Q +P I W
Sbjct: 256 RLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQ--HHPF---IGWADGVVW 310
Query: 269 NK-EKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV-------------- 304
N+ E L AW+ GQTGYP +DA MRQ+ R++ ++ V
Sbjct: 311 NRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYF 370
Query: 305 ---------------------------------CPVNFGRRLDPDGIYIKRYVPELRQFP 331
P G R D DG++I+R++PEL P
Sbjct: 371 MSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
I++PW+ Q+ DYP +V+H QA L
Sbjct: 431 DSDIHQPWRWAERQQQHL------DYPVPLVDHKQARL 462
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 136/409 (33%), Gaps = 118/409 (28%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG----- 65
NR FLL CL DL R L GG L + G+P +L E+ T++ D
Sbjct: 48 NRIAFLLGCLRDLRRSLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAYARSR 107
Query: 66 --------------VKPYQSFPTGSHPPRYQPCKT------LLNFRDLSGLPPRPKEDID 105
+ +++ T P R P FR PPR
Sbjct: 108 ENGLRLALAEHGCTLHVHEAVVTAHPPGRVTPAGKDHFAVFTPYFRRWVETPPR------ 161
Query: 106 FRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLS 165
E+L R +T P P + P L R GGET A
Sbjct: 162 ----RIAAAPEAL-RMPDGVRTGPMPAREDLCPGA-LSPELPR--GGETTAR-------Q 206
Query: 166 QEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPS 224
Q + F+ GV ++ DL G TS+ S L FGCLS GR
Sbjct: 207 QMLRWFEQGVADYDEGHDDLAGDATSRLSPYLHFGCLSPVEI---------VARAGRSEP 257
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
QL WR++ + M A P ++ PE+ AW++G+TG
Sbjct: 258 ERAFVRQLAWRDFHHQMLAARPGCSHLDYRSRGDRWRDDPEA-------FRAWRDGRTGI 310
Query: 285 PFIDAVMRQLRR----------------------------------LLDCTYCVCPVNF- 309
P +DA MRQL R L+D +N+
Sbjct: 311 PIVDAGMRQLSREGWMHNRARLITASFLTKTLYLDWRLGAQHFFDLLVDGDVANNDMNWQ 370
Query: 310 -----------GRRLDP---------DGIYIKRYVPELRQFPIQYIYEP 338
R L+P G YI+RYVPEL P +++P
Sbjct: 371 WVAGTGADTRPNRVLNPMRQAERYDPSGNYIRRYVPELASLPTAALHDP 419
>gi|408373113|ref|ZP_11170811.1| deoxyribodipyrimidine photo-lyase [Alcanivorax hongdengensis
A-11-3]
gi|407766951|gb|EKF75390.1| deoxyribodipyrimidine photo-lyase [Alcanivorax hongdengensis
A-11-3]
Length = 501
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 148/423 (34%), Gaps = 94/423 (22%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
+++F+ E L DL RQL + G L++V+G +++ L L ++ G Y
Sbjct: 49 QWQFIAESLRDLRRQLAAIGLPLWVVEGETLTVLDGLHSRFGAFALHSHEEYGGHWTY-- 106
Query: 72 FPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE---------V 122
R + K R ++ H FG M L R+ +
Sbjct: 107 -------ARDRQVKAWCESRRVTWR----------EHAPFGVMRPCLDRDHWAAHWQAFM 149
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLG-------GETEALIKLNERLSQEIESFKSGV 175
T P P D+ D L R G G ER+ Q + ++
Sbjct: 150 DAPLTPPPGPAAPLAPAPDWPD-LTRPRGADQNPCPGRQRGGTDNGERVWQSFLNQRARG 208
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
Y +P S+ S L +GCLS+R+ L + G + + +W
Sbjct: 209 YRGGISAPQRAQYAGSRLSPYLAWGCLSLRQVVQQLWARQESEPRGPLAAGLDAFESRLW 268
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR-- 292
+ + ME + + L E P +L AWK GQTG+P +DA MR
Sbjct: 269 WHCHFIQKLEDQV--DMEHQSLHPGLRQLRED-PGNPAWLAAWKAGQTGWPLVDAAMRYL 325
Query: 293 --------QLRRLLDCTYC-----------------------------------VCPVNF 309
++R +L T C V +N
Sbjct: 326 HHHGWINFRMRAMLVSTACYPLWLHWREPALHLARLFVDYEPGIHYPQIQMQAGVTGINA 385
Query: 310 ---------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPER 360
R+LDP G +I+R+VPEL +I++PW Q + +I DYP
Sbjct: 386 LRMYNPTLQARKLDPQGRFIRRWVPELAAVSSAWIHQPWLMGARQQRDSGVLIGSDYPAP 445
Query: 361 IVN 363
+VN
Sbjct: 446 LVN 448
>gi|384518625|ref|YP_005705930.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
Length = 477
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 73/300 (24%)
Query: 124 LFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP 183
+F PE+ Y E PL + GE A +LN + Q+++S++ N+
Sbjct: 171 IFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYE------NKRDF 224
Query: 184 DLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSA 243
+ S L+ G LS+R + L +++ S +L WR+++ + +
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELASVPSSL------SKETFKKELAWRDFYNMIYS 278
Query: 244 HNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------- 295
P + I W+ N + W+ G+TGYP IDA MRQL
Sbjct: 279 AFPQQKEEAIQEKFRYIQWI-----NDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNR 333
Query: 296 -RLLDCTYCV-----------------------------------------------CPV 307
R++ ++ V P+
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393
Query: 308 NFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++ D DG +IK+YVPEL+Q P +YI++P +Q + + + ++YP+ IVN+ +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASS 453
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 112/291 (38%), Gaps = 76/291 (26%)
Query: 153 ETEALIKLNERLSQ-EIESFKSGV---YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
E E +I E +Q +E+F + Y + P + G TSQ SAALKFG + +R +
Sbjct: 202 EGELVISPGEAAAQARLEAFTNNAITEYQEQRNFPAVDG--TSQLSAALKFGVIGIRTVW 259
Query: 208 WALHDHFNTIHEGRPPSHFNITGQ-LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
A + G + Q L WRE++ H P + N PW
Sbjct: 260 QATIEALENSRSGETEASIRTWQQELAWREFYQHAMYHFPELAEGAYRETFKNFPW---- 315
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQL-------------------------------- 294
N +++ AW G+TG+P +DA MRQL
Sbjct: 316 -ENNQEHFQAWCEGRTGFPIVDAAMRQLNEIGWMHNRCRMIVASFLTKDLQINPQWGEKY 374
Query: 295 --RRLLDCTYCVC---------------------PVNFGRRLDPDGIYIKRYVPELRQFP 331
++L+D P + ++ DPDG YI+++V ELR
Sbjct: 375 FMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKFDPDGEYIRQWVSELRSVD 434
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNH-VQASLENKQYLKKEKAN 381
QY+ PL + + YP+ IV+H Q +L + Y +++ N
Sbjct: 435 TQYLVTGKIPPLELH-------AVGYPKPIVDHKTQQALFKEIYQQQKGVN 478
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 104/279 (37%), Gaps = 78/279 (27%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTS----QSAALKFGCLSVR 204
W GE A KL++ + ++ ++ G + + + P + AA+ +
Sbjct: 204 WTPGENAAREKLDDFIDGALKGYEEGRDFPAKDATSMLAPHLALGEISPAAVWHATKGLS 263
Query: 205 RFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
R H N I R +L+WRE+ Y + H P D+ N W
Sbjct: 264 R-----HIASNDISRFRK--------ELVWREFCYHLLFHFPKLDEKNWNESFDAFGWRQ 310
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDA---------VMRQLRRLLDCTYCV----------- 304
+ EK AW G TGYP +DA M R++ ++ +
Sbjct: 311 D-----EKSFKAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGE 365
Query: 305 ------------------------------------CPVNFGRRLDPDGIYIKRYVPELR 328
P+ G + D DG Y++R+VPEL
Sbjct: 366 KWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELE 425
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
+ ++I++P++AP + KA + K YP+ IV+H +A
Sbjct: 426 KLDRKFIHKPFQAPRELLNKAGIELGKTYPQPIVDHTKA 464
>gi|374279322|gb|AEZ03843.1| cryptochrome 3, partial [Gadus morhua]
Length = 99
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 302 YCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
+C CPV FGRR DP G YI+ Y+P L+ +P +YIYEPW APL VQ+
Sbjct: 53 HCYCPVGFGRRTDPSGDYIRHYIPILKDYPNRYIYEPWNAPLSVQKA 99
>gi|375000473|ref|ZP_09724813.1| FAD binding domain of DNA photolyase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353075161|gb|EHB40921.1| FAD binding domain of DNA photolyase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
Length = 473
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 99/259 (38%), Gaps = 83/259 (32%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y S + P + G + SA+L G LS R+ L +G P S + +LIWR
Sbjct: 224 YASQRDFPAVDGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWR 280
Query: 236 EYFY-------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
E++ + H P+ ++ + W H Y AW+ G+TGYP +D
Sbjct: 281 EFYRHLMTWYPALCKHQPFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVD 329
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 330 AAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAAS 389
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P G R D DG +I++++P LR P + I+EPW+ EKA +
Sbjct: 390 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVV 445
Query: 353 ISKDYPERIVNHVQASLEN 371
+ DYP IV H QA +
Sbjct: 446 L--DYPRPIVEHKQARIAT 462
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
PV+ G++ DP+G Y++RYVPEL P +YI+EP K L Q KA +I +DYP IV+H
Sbjct: 395 PVSQGQKFDPEGAYVRRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDHA 454
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 115/302 (38%), Gaps = 38/302 (12%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE--GVKPY 69
R +FLL+CLA LD +L++ G L + +G P+ + RE + + + +D V+
Sbjct: 49 RTQFLLDCLAALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRD 108
Query: 70 QSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR--------- 120
+ Y+ +F+D + D R T T R
Sbjct: 109 TAIKQALREAGYEAH----SFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVT 164
Query: 121 --EVSLFQTVPKP--EQFHKYPEM--DFGDPLIRWLGGETEALIKLNERLSQEIESFKSG 174
++ T+P P E ++ D L R+ GE AL L + + S+ G
Sbjct: 165 VQDMPRLATIPLPVSEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLASYAQG 224
Query: 175 VYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
L P L+ G LS R+ A + G+LIW
Sbjct: 225 RDLMAVAGTSRLSP------YLRLGVLSPRQCVAAALAAPPGPGPE------SWIGELIW 272
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
R+++ + H P+ + P I W PN AW+ G TGYP +DA MRQL
Sbjct: 273 RDFYVQVLYHFPHALRGSFKPAYNRIDW-----PNDPVLFAAWQQGLTGYPIVDAAMRQL 327
Query: 295 RR 296
+R
Sbjct: 328 QR 329
>gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
Length = 489
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 112/286 (39%), Gaps = 75/286 (26%)
Query: 162 ERLSQEIESF---KSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF-NTI 217
E ++Q +E+F K+ Y N+ P + G + S L G LS R+ + L HF N +
Sbjct: 218 ETIAQRLETFFETKAETYHQNRDFPAIDGT-SCLSPYLAIGALSARQCLYQLLQHFPNAL 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEK-NPICLNIPWLPESHPNKEKYLNA 276
+ F +++WRE++ + P Q + + W + L A
Sbjct: 277 EINKDDGAFTWLNEIVWREFYGHLLHRYPELSQYQPFQKFTRFVQW-----KDDAVLLKA 331
Query: 277 WKNGQTGYPFIDAVMRQLR---------RLLDCTY----CVC------------------ 305
W+ G+TG+P +DA MRQLR R++ ++ +C
Sbjct: 332 WQEGKTGFPIVDAAMRQLRSTGWMHNRLRMITASFLTKDLLCDWRVGEQWFMQHLIDGDF 391
Query: 306 -------------------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
P G+R DP G +I+ +V EL P +YI+ P
Sbjct: 392 ASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGDFIRTWVKELEHVPDKYIHTP-- 449
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINK 386
+ S +YP IV+H +A L + K+ KA I++
Sbjct: 450 ------HQWASAESLNYPLPIVDHKEARLIAIESFKQAKAYMDIHQ 489
>gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
Length = 539
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 63/246 (25%)
Query: 190 TSQ-SAALKFGCLSVRRFYWALH-DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
TSQ S L FG +S+R+ ++++ F + S L REY +S + P+
Sbjct: 192 TSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGLREYSRYLSFNFPF 251
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
+ + PW + E Y +W+ G+TGYP +DA MRQL R++
Sbjct: 252 THKRSLLANLKHFPWRAD-----EGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVV 306
Query: 299 DCTYCV----CPVNFGRR------------------------------------------ 312
++ V P +G +
Sbjct: 307 VSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQEEGY 366
Query: 313 -LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
LDP G Y+++++PEL + PI +I+ PW AP + A + +YP IV A
Sbjct: 367 KLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQ 426
Query: 372 KQYLKK 377
+Q L +
Sbjct: 427 QQALDE 432
>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|415804922|ref|ZP_11501153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|416346215|ref|ZP_11679486.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|417161485|ref|ZP_11997721.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|417173694|ref|ZP_12003490.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|417179431|ref|ZP_12007421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|417242575|ref|ZP_12037792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|417622024|ref|ZP_12272350.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|419298986|ref|ZP_13841000.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|419315583|ref|ZP_13857408.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|419321430|ref|ZP_13863166.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|419327648|ref|ZP_13869277.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|419333082|ref|ZP_13874641.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|419338484|ref|ZP_13879970.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|419344334|ref|ZP_13885716.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|419348772|ref|ZP_13890125.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|419353685|ref|ZP_13894968.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|419359015|ref|ZP_13900245.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|419364042|ref|ZP_13905223.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|419871209|ref|ZP_14393269.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|420390115|ref|ZP_14889383.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|432812811|ref|ZP_20046657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|345385472|gb|EGX15316.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|378155774|gb|EHX16830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|378173681|gb|EHX34515.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|378174037|gb|EHX34865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|378175651|gb|EHX36466.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|378188762|gb|EHX49356.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|378190279|gb|EHX50864.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|378193388|gb|EHX53927.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|378204434|gb|EHX64850.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|378207663|gb|EHX68052.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|378207976|gb|EHX68361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|378218790|gb|EHX79060.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|386174021|gb|EIH46022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|386176386|gb|EIH53865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|386186093|gb|EIH68810.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|386211563|gb|EII22019.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|388337681|gb|EIL04178.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|391314439|gb|EIQ71989.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|431356931|gb|ELG43617.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
Length = 472
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 77/257 (29%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L +G S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW--LSEL 276
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLP----ESHPNKEKYLNAWKNGQTGYPFID 288
IWRE++ + YY + K+ C I W +S+P +L AW+ G+TGYP +D
Sbjct: 277 IWREFYRHLMT---YYPSLCKH--CPFIAWTDRVQWQSNP---AHLQAWQKGKTGYPIVD 328
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P+ G + D +G +I+R++PELR P + ++EPWK +KA +
Sbjct: 389 TGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVM 444
Query: 353 ISKDYPERIVNHVQASL 369
+ DYP+ IV+H +A L
Sbjct: 445 L--DYPQPIVDHKEARL 459
>gi|381182363|ref|ZP_09891174.1| deoxyribodipyrimidine photolyase [Listeriaceae bacterium TTU
M1-001]
gi|380317741|gb|EIA21049.1| deoxyribodipyrimidine photolyase [Listeriaceae bacterium TTU
M1-001]
Length = 463
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 115/286 (40%), Gaps = 74/286 (25%)
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
L GE +AL +L+ + + + Y N+ P L + S ++ G +S+R Y A
Sbjct: 196 LSGEKQALKQLDTFIKHHLHT-----YEKNRDFPALDAT-SRLSPYIRTGAISIRTVYDA 249
Query: 210 LHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPN 269
+ EGR +L WR++++ + NP+ +E + W
Sbjct: 250 VMQ--APYSEGRE----TFMKELAWRDFYHMIYKENPHQKNLEIKEHYRGLNW-----NT 298
Query: 270 KEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRL------- 313
+ + + WK GQTG+P +DA MRQL R++ ++ + RL
Sbjct: 299 NQAHFDKWKKGQTGFPIVDAAMRQLNETGWMHNRLRMIVASFLTKDLLTDWRLGERYFEE 358
Query: 314 -----DP---------------DGI-YIKRYVPE------------LRQF-------PIQ 333
DP D + Y + + P +RQF P
Sbjct: 359 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQGERFDPHGHFIRQFVPELEFVPDS 418
Query: 334 YIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
+I++P K + Q+KA C+I YPE+IV+H Q E L KEK
Sbjct: 419 FIHDPQKMSVSEQQKAKCLIGDVYPEKIVDH-QKMREQAILLYKEK 463
>gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 585
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 59/245 (24%)
Query: 175 VYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
+Y S++ D+ + S L+ G +S R YW + D + P + +LIW
Sbjct: 260 LYESDRSRADMEYATSQLSVYLRIGIISPRELYWRIEDSSLS-----PEAKKTFARRLIW 314
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
RE Y P W+ + ++ NAWK G TGYP +DA MR+L
Sbjct: 315 RELAYYQLFCFPKMRDRSIRKHYEASEWV--TGDEEKGRFNAWKRGLTGYPLVDAGMREL 372
Query: 295 ---------RRLLDCTYCVCPV----------------------------NFGR------ 311
R++ ++ V + N GR
Sbjct: 373 YTTGYLTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGRSGIDQW 432
Query: 312 ---------RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
DP G Y +++VPEL P+QY+ PW+ G A ++ + YP RIV
Sbjct: 433 NFVLSPENASQDPYGEYTRKWVPELSPLPLQYLQRPWQTFEGDLRMAGIVLGETYPHRIV 492
Query: 363 NHVQA 367
++
Sbjct: 493 QDLKG 497
>gi|418511766|ref|ZP_13078015.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366084351|gb|EHN48261.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
Length = 473
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 99/259 (38%), Gaps = 83/259 (32%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y S + P + G + SA+L G LS R+ L +G P S + +LIWR
Sbjct: 224 YASRRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWR 280
Query: 236 EYFY-------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
E++ + H P+ ++ + W H Y AW+ G+TGYP +D
Sbjct: 281 EFYRHLMTWYPALCKHQPFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVD 329
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 330 AAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAAS 389
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P G R D DG +I++++P LR P + I+EPW+ EKA +
Sbjct: 390 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVV 445
Query: 353 ISKDYPERIVNHVQASLEN 371
+ DYP IV H QA +
Sbjct: 446 L--DYPRPIVEHKQARIAT 462
>gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
psychrophilum JIP02/86]
gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
psychrophilum JIP02/86]
Length = 502
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 86/233 (36%), Gaps = 78/233 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
S L +G +S+R Y + H+ T R N +L W +F TM N
Sbjct: 235 SPYLTYGNISMRAIYQYTNQHYETSKNKRAI--LNFVSRLHWHCHFMQKFEDECTMEFEN 292
Query: 246 P--YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL--------- 294
YD + K P E Y+ AW+ G+TG P +DA MR L
Sbjct: 293 ANRAYDVLIK--------------PKNETYIKAWQEGKTGVPIVDACMRCLVTTGYINFR 338
Query: 295 ------------------------RRLLD--------------------CTYCVCPVNFG 310
R+ LD P+
Sbjct: 339 MRAMVVSFFTFNLWQDWRELHFLARQFLDYEPGIHYPQIQMQSGTTGINTIRIYNPIKNS 398
Query: 311 RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
DP+GI+IK+++PEL + P+ ++EPWK Q+ NC I +DYP IVN
Sbjct: 399 EEHDPEGIFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYNCKIGEDYPTPIVN 451
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 116/300 (38%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ + Q
Sbjct: 180 ALAELVWHPEQTFDYPRVD-STP---WAADFETVRAQLRDFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P I S YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP--------AINSVLYPARLVDHKQ 455
>gi|416528655|ref|ZP_11744048.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416537891|ref|ZP_11749108.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416554679|ref|ZP_11758410.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416567807|ref|ZP_11764403.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363553312|gb|EHL37564.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363561082|gb|EHL45212.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363562615|gb|EHL46709.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363578413|gb|EHL62223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
Length = 473
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 99/259 (38%), Gaps = 83/259 (32%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y S + P + G + SA+L G LS R+ L +G P S + +LIWR
Sbjct: 224 YASRRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWR 280
Query: 236 EYFY-------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
E++ + H P+ ++ + W H Y AW+ G+TGYP +D
Sbjct: 281 EFYRHLMTWYPALCKHQPFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVD 329
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 330 AAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAAS 389
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P G R D DG +I++++P LR P + I+EPW+ EKA +
Sbjct: 390 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVV 445
Query: 353 ISKDYPERIVNHVQASLEN 371
+ DYP IV H QA +
Sbjct: 446 L--DYPRPIVEHKQARIAT 462
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 104/278 (37%), Gaps = 73/278 (26%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGV--YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRR 205
W GG E+ + +F + Y + PD TS+ S L+FG +S R+
Sbjct: 204 WAGGLRESWTPGEGAAQDNLTAFLDALPGYTEGRDRPDCAA--TSRLSPHLRFGEISPRQ 261
Query: 206 FYWALHDHFNTIHEGRPPSHFNIT---GQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
++A F RP +I +L WRE+ + +P + PW
Sbjct: 262 VWYAAR--FAAAE--RPAIAGDIDKFLSELGWREFCRHLLHDHPDLAERNLQASFDAFPW 317
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------------------------- 294
+ ++ L+AW+ G TGYP +DA MR+L
Sbjct: 318 ITDA-----AALHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRC 372
Query: 295 ------RRLLDCTYCVCPVNF----------------------GRRLDPDGIYIKRYVPE 326
L+D P N+ G + DP G Y++R+VPE
Sbjct: 373 GEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQGEKFDPAGDYVRRWVPE 432
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
L P ++I++PW A A + +YPE I++H
Sbjct: 433 LASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDH 470
>gi|345298366|ref|YP_004827724.1| DNA photolyase FAD-binding protein [Enterobacter asburiae LF7a]
gi|345092303|gb|AEN63939.1| DNA photolyase FAD-binding protein [Enterobacter asburiae LF7a]
Length = 470
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 78/238 (32%)
Query: 193 SAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQM 251
SA L G LS R+ + L + + G N +LIWRE++ + ++P
Sbjct: 238 SACLTLGVLSPRQCLHRLLAEQPQALEGGAGAVWLN---ELIWREFYRHLMTYHP----- 289
Query: 252 EKNPICLNIPWLPESHPNK----EKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
+C + P++ + K + LNAW+NG TGYP +DA MRQL R++
Sbjct: 290 ---GLCKHRPFIRWTDNVKWQMNDTQLNAWQNGLTGYPIVDAAMRQLNETGWMHNRLRMI 346
Query: 299 DCTYCV-----------------------------------------------CPVNFGR 311
++ V P G+
Sbjct: 347 TASFLVKDLLIDWRIGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQ 406
Query: 312 RLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
+ DPDG +I+ ++PEL P++ ++EPW + ++ ++ DYP IV+H QA +
Sbjct: 407 KFDPDGEFIRHWLPELADVPLKALHEPW---VWADKQG---VTLDYPRPIVDHKQARV 458
>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
Length = 505
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 62/228 (27%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
L+FG +S+RR H G +L+WR++++ + H+P P
Sbjct: 254 LRFGTVSIRRLAREAHQRLTAGSRGAEV----WLSELVWRDFYHQLLHHHPRVVGGCFKP 309
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV---------MRQLRRLLDCTYCV-- 304
+ W E + ++ AW G+TGYP +DA M R++ ++
Sbjct: 310 EYDRLHW--EHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRLRMISASFLTKD 367
Query: 305 -----------------------------------C----------PVNFGRRLDPDGIY 319
C PV+ R DP+G +
Sbjct: 368 LGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSERFDPEGRF 427
Query: 320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
I+RY+P+L + P ++ PW+A A ++ +DYP +V H +A
Sbjct: 428 IRRYLPQLAKLPDTLLHAPWRARPADLAAAGVVLGRDYPAPVVAHEEA 475
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ + Q
Sbjct: 180 TLAELVWHPEQTFDYPRVD-STP---WAADFETVRAQLRDFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ + Q
Sbjct: 180 ALAELVWHPEQTFDYPRVD-STP---WAADFETVRAQLRDFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ + Q
Sbjct: 180 ALAELVWHPEQTFDYPRID-STP---WAADFETVRAQLRDFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>gi|336451322|ref|ZP_08621760.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
gi|336281693|gb|EGN74965.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
Length = 497
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 111/285 (38%), Gaps = 83/285 (29%)
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207
+WL GE K E + + ++ +K+ + P + G T SA + G LS R
Sbjct: 215 KWLVGEANLRKKTQEFVRELVDDYKA-----KRDFPAIDGTST-LSAYFEIGALSPRVAV 268
Query: 208 WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYD-----QMEKNPICLNIPW 262
L EG + +L WRE++ + H P Q E++ PW
Sbjct: 269 HLLQRVSPEFPEGLSDGAYTWLSELAWREFYQHLMFHEPRLAMGEPFQAEQSAF----PW 324
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL---------------------------- 294
+ N + AW G+TG+P +DA MRQL
Sbjct: 325 V-----NDKAQFVAWSEGRTGFPIVDAGMRQLNATGWMHNRVRMIVASFLVKDLHINWQW 379
Query: 295 ------RRLLDCTY----------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
+RL+D ++ P + G + DPDG YI+++V E
Sbjct: 380 GEEYFMQRLIDGSFPANNGGWQWSAGTGTDAAPYFRVFNPTSQGEKFDPDGNYIRKWVEE 439
Query: 327 LRQFPIQYIYEPW----KAPLGVQEKANCIISKDYPERIVNHVQA 367
LR P ++I+ P + + +EKA ++ YP+ IV+H QA
Sbjct: 440 LRDVPSKHIHNPHAYLKQQGMFAEEKA---ANETYPKPIVDHKQA 481
>gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 473
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 99/259 (38%), Gaps = 83/259 (32%)
Query: 176 YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWR 235
Y S + P + G + SA+L G LS R+ L +G P S + +LIWR
Sbjct: 224 YASRRDFPAVDGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWR 280
Query: 236 EYFY-------TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
E++ + H P+ ++ + W H Y AW+ G+TGYP +D
Sbjct: 281 EFYRHLMTWYPALCKHQPFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVD 329
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 330 AAMRQLNATGWMHNRLRMITASFLVKDLLIDWWLGERYFMSQLIDGDLAANNGGWQWAAS 389
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P G R D DG +I++++P LR P + I+EPW+ EKA +
Sbjct: 390 TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVV 445
Query: 353 ISKDYPERIVNHVQASLEN 371
+ DYP IV H QA +
Sbjct: 446 L--DYPRPIVEHKQARIAT 462
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 167/449 (37%), Gaps = 115/449 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R FLLE +ADL + +++ GG+L I G P +I +L + + ++
Sbjct: 49 GFKKTGIYRASFLLESVADLRQSIRAKGGELIIRIGEPANILAELAESADVAAVYASKE- 107
Query: 64 EGVKPYQSFPTGSHPPRYQP---------CKTLLNFRDL----SGLPPRPKEDIDFRHVT 110
V ++ + R +P TL + RDL S LP DI
Sbjct: 108 --VTQEETDAESNLSKRLKPLNIDLDLFWVATLYHVRDLPFEISKLP-----DI------ 154
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGD--------------PLIR----WLGG 152
F +++ + T+P PEQ E++ GD P IR + GG
Sbjct: 155 FTQFRTRIEKYGKVRPTIPAPEQIRIMSEVEAGDIPTLATFGFAPDVAPDIRAAVPFKGG 214
Query: 153 ETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWAL 210
ET AL +LN R E E ++ + + G S SA L GCLS R Y +
Sbjct: 215 ETVALERLN-RYVWERELIRT----YKETRNGMLGEDYSSKFSAWLALGCLSPRLIYEEV 269
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ + + S + + +L+WR++F ++ Y P + + + +
Sbjct: 270 KRYED--ERVKNESTYWLIFELLWRDFFRFVALR---YGTRLFKPSGIRHDFNRKWRRDT 324
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRRL--------------------LDCT--------- 301
+ ++ W G+TG PF+DA MR++ +D T
Sbjct: 325 DVFIR-WAEGETGIPFVDANMREMNATGFMSNRGRQNVGSFLVKDLGIDWTWGAAYFESL 383
Query: 302 ---YCVCPVNFGR------------------------RLDPDGIYIKRYVPELRQFPIQY 334
Y VC N+G R D G Y+K ++PE+ P
Sbjct: 384 LVDYDVCS-NWGNWNYVAGVGNDPREDRYFNIYSQATRYDEQGDYVKHWLPEIAGVPADK 442
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIVN 363
I+ QE+ + YP IVN
Sbjct: 443 IHLVSNLTRAEQEQFGVALGDTYPLPIVN 471
>gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica]
Length = 251
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 99/253 (39%), Gaps = 74/253 (29%)
Query: 185 LTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAH 244
L T SA LKFG +S+R YW + F H+ + QL++R+++ + +H
Sbjct: 3 LKAGTTKMSAHLKFGTVSIREMYWRTAELFGERHD--------LIRQLVFRDFYLKIYSH 54
Query: 245 NPYYDQMEKNPICLN--IPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
NP + ++ IPW + EK AW G TG+P +DA RQL+
Sbjct: 55 NPELQRGTALQAGVDERIPW-----SDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHN 109
Query: 296 RLLDCTYCVCPVNF---------------------------------------------- 309
R+ T CV F
Sbjct: 110 RMRMLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFN 169
Query: 310 ----GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
++ D +G YIK+Y+PEL +++ A + + K N + + YP +V H
Sbjct: 170 PWIQSKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKV-QAYPAPVVKHD 228
Query: 366 QASLENKQYLKKE 378
+AS +N YL K+
Sbjct: 229 EAS-KNAVYLYKK 240
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ + Q
Sbjct: 180 ALAELVWHPEQTFDYPRVD-STP---WAADFETVRAQLRDFCRERVQDYHQARDFPAQEG 235
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
+S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 236 T------SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>gi|134100631|ref|YP_001106292.1| deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea NRRL
2338]
gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL
2338]
gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
erythraea NRRL 2338]
Length = 448
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 111/294 (37%), Gaps = 37/294 (12%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R RFL E L DLD L+ GG+L + +G+ + ++ E++ ++ C V Y
Sbjct: 49 RTRFLDESLTDLDENLRGLGGRLVLRRGALVDEVCRIAEEVDAAEVHI---CADVSGYAM 105
Query: 72 FPTGSHPPRYQPCKTLLNFRD--LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVP 129
+ L D ++ L P F + L+R + + P
Sbjct: 106 RRQARLAEALSAQRRELRCHDEVVTVLAPGRVTPGGADKDHFTVFTPYLRRWLETGKRPP 165
Query: 130 K--------PEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQV 181
P + P G W GGETE + + L GV ++
Sbjct: 166 AAKPRRLRLPSRLSIGPRPAGGSADGTWPGGETEGRRRADRWLG-------GGVRAYHER 218
Query: 182 SPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYT 240
DL TSQ S L FGCLS R + G P F QL WR++ +
Sbjct: 219 HDDLAADATSQLSPYLHFGCLSARELA-------DRAGRGEGPEAF--VRQLAWRDFHHQ 269
Query: 241 MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+ A P + P W H + + L AWK G+TG P +DA MRQL
Sbjct: 270 VLAARPEAVHEDYRP--RGDRW----HRDADA-LRAWKQGRTGVPIVDAGMRQL 316
>gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
Length = 489
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 63/246 (25%)
Query: 190 TSQ-SAALKFGCLSVRRFYWALH-DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPY 247
TSQ S L FG +S+R+ ++++ F + S L REY +S + P+
Sbjct: 241 TSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSFNFPF 300
Query: 248 YDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLL 298
+ + PW + E Y +W+ G+TGYP +DA MRQL R++
Sbjct: 301 THKRSLLANLKHFPWRAD-----EGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVV 355
Query: 299 DCTYCV----CPVNFGRR------------------------------------------ 312
++ V P +G +
Sbjct: 356 VSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGY 415
Query: 313 -LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLEN 371
LDP G Y+++++PEL + PI +I+ PW AP + A + +YP IV A
Sbjct: 416 KLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQ 475
Query: 372 KQYLKK 377
+Q L +
Sbjct: 476 QQALDE 481
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 125/312 (40%), Gaps = 43/312 (13%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPY-Q 70
R +++ CL L ++ G QL I+QG+P+S+ L L + + D E PY Q
Sbjct: 51 RVTYMIGCLQALQKRYNQAGSQLLILQGNPVSVIPDLAAALQAKAVFWNWDVE---PYSQ 107
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSL------ 124
+ + LN + L P E + + + +S
Sbjct: 108 TRDIAVIDSLTEKGIQFLN-HNWDQLLHSPTEIFSGSKTPYTVYTPFWKNWISKPKATPV 166
Query: 125 -----FQTVPKPEQFHKYPEMDFGDPLIRWLG--GETEALIKLNERLSQE-IESFKSGV- 175
F + EQ P + LG + E +I+ E +QE +E+F +
Sbjct: 167 ETLPNFAGLTAQEQEIAQQAGAINLPSAQDLGFIWDGELVIEPGEAAAQERLETFTHSMI 226
Query: 176 --YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHF-NTIHEGRPPSHFNITGQ 231
Y + P + G TSQ SAALKFG + +R + A + N+ E S +
Sbjct: 227 NGYQEQRNFPAIDG--TSQLSAALKFGVIGIRTVWQATIEALENSNSEEVTASIRTWQQE 284
Query: 232 LIWRE------YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
L WRE Y++ A Y D + + PW N EK+ AW G+TGYP
Sbjct: 285 LAWREFYQHAMYYFPDLADGAYRDSFK------SFPW-----QNNEKHFQAWCEGKTGYP 333
Query: 286 FIDAVMRQLRRL 297
+DA MRQL +
Sbjct: 334 IVDAAMRQLNEI 345
>gi|419957831|ref|ZP_14473897.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae GS1]
gi|388607989|gb|EIM37193.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae GS1]
Length = 470
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 118/291 (40%), Gaps = 80/291 (27%)
Query: 137 YPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
YP+ F + + E A+ +L + +Q + Y + + P + G + SA L
Sbjct: 190 YPQQSFDETVFP--ASEKAAIARLRQFCAQ-----GAVEYEARRDFPAIEGT-SRLSACL 241
Query: 197 KFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
G LS R+ + L + + G N +LIWRE++ + ++P D + P
Sbjct: 242 ALGALSPRQCLHRLLAEQPQALDGGAGAVWLN---ELIWREFYRHLMTYHP--DLCKHRP 296
Query: 256 ICLNIPWLPESH-PNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV- 304
I W + + EK L AW++G TG+P +DA MRQL R++ ++ V
Sbjct: 297 F---IRWTEQVQWQSNEKLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVK 353
Query: 305 ----------------------------------------------CPVNFGRRLDPDGI 318
P G+R D DG
Sbjct: 354 DLLIDWRTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGE 413
Query: 319 YIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
+I+R++PEL+ P + I+EPW +K ++ +YP IV+H QA +
Sbjct: 414 FIRRWLPELKDVPAKAIHEPWVWA----DKQR--VTLNYPRPIVDHKQARV 458
>gi|448430667|ref|ZP_21584824.1| deoxyribodipyrimidine photolyase [Halorubrum tebenquichense DSM
14210]
gi|445688802|gb|ELZ41050.1| deoxyribodipyrimidine photolyase [Halorubrum tebenquichense DSM
14210]
Length = 532
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 156/429 (36%), Gaps = 102/429 (23%)
Query: 12 RFRFLLECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
R FL +CL DLDRQ + GG L G P+ + + F +E V
Sbjct: 77 RIEFLHDCLRDLDRQYRDVGGAGLTYAHGDPLDVLGR------FVDAGWE-----VVAAA 125
Query: 71 SFPTGSHPPRYQPCKTLLNFRDLSGL-----PPRPKEDIDFRHVTFGTMSESLQ---REV 122
S R + + L R ++G RP++ HV S+ R V
Sbjct: 126 SATGRYGRRRDERAREELGVRFVAGDGLVRDADRPRDGWS-DHVESWLASDPFDWDPRSV 184
Query: 123 SL--FQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKL---NERLSQEIESFKSGVYL 177
++ T PE+ +D + GG A KL ER++ S S V
Sbjct: 185 AVDGLDTEIDPERVSDAYGVDSTKTRVP-TGGRGPAREKLRAFTERIADYPGSISSPV-- 241
Query: 178 SNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT-IHEGRPPSHFNITGQLIWRE 236
D G + S L+FGCLSVR +H H + EGR S F +L W
Sbjct: 242 ------DARGGTSGLSPYLRFGCLSVRE----VHRHVDERAPEGRGKSMF--VSRLFWNR 289
Query: 237 YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE-KYLNAWKNGQTGYPFIDAVMRQL- 294
++ P + NP+ +H + + AWK G+TG+P +DA MR L
Sbjct: 290 HYTQKLLDWPGWLDEAVNPVYRGF-----NHDRHDPDLVAAWKEGRTGFPMVDASMRCLR 344
Query: 295 ---------------------------------RRLLDC----------TYCVCPVNFGR 311
R L+D + C G
Sbjct: 345 ETGWLNFRMRALCASVYFHVLQQPWRIGADHFYRHLIDGDPAINYTQWQSQCGLVGRPGL 404
Query: 312 RL----------DPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERI 361
RL DP+G ++ R+VPEL P ++ P K P+ VQ + I + YP +
Sbjct: 405 RLYDPRKQVRDQDPEGEFVARWVPELDPLPAAHLDAPEKTPISVQREVGVEIGETYPYPV 464
Query: 362 VNHVQASLE 370
V++ A E
Sbjct: 465 VDYEAARSE 473
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 119/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ Y +
Sbjct: 180 ALAELVWHPEQAFDYPRID-STP---WAADFETVRAQLRDFCRERVQD-----YHQTRDF 230
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
P G +S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 231 PAQEGT-SSLSPYLAIGVLSARQCVARLY-HESSMGEISEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLIKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>gi|448414324|ref|ZP_21577463.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
gi|445682617|gb|ELZ35034.1| deoxyribodipyrimidine photolyase [Halosarcina pallida JCM 14848]
Length = 468
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 100/447 (22%), Positives = 148/447 (33%), Gaps = 122/447 (27%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG 65
H G R RF+L+ LA L Q + G L + +G P+ +L + ++ + QD G
Sbjct: 39 AHAGAARVRFMLDALAGLREQYRERGSDLVVARGDPVEEIPRLAAAYDAERVVWNQDYSG 98
Query: 66 V---------KPYQSFPTGSHPPR----YQPCKTLLN--------------FRDLSGLPP 98
+ + G +QP N +RD P
Sbjct: 99 LARTRDAAVRRALDDAGVGRESVHDAIHHQPGSITTNAGDPYSVYTYFWKKWRDREKAGP 158
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALI 158
P D D G E ++ F +P TEA
Sbjct: 159 YPAPDADSLADVTG-------------------EDLPGIGDLGFEEPTAEVPDAGTEAA- 198
Query: 159 KLNERLSQEIESFKSGV---YLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
ERLS SF + Y ++ P+ + S LK+G + VR Y A +
Sbjct: 199 --RERLS----SFCADAIYRYAEDREYPERDAT-SRLSTDLKWGTVGVREVYEATEEAAA 251
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
S QL WRE++ + NP I W ++ L
Sbjct: 252 EADGEEAESVEEFQSQLAWREFYAHVLYFNPEVVTENYKSYENGIEWRDDA-----AALT 306
Query: 276 AWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV---------------------- 304
AWK+G+TGYP +DA MRQLR R+L ++
Sbjct: 307 AWKDGETGYPIVDAGMRQLRAEAYMHNRVRMLVASFLTKDLLLDWREGYAHFREHLADHD 366
Query: 305 -------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P G R DP+ YIK +VPELR + +++ W
Sbjct: 367 TANDNGGWQWAASTGTDAQPYFRVFNPATQGERYDPEATYIKEHVPELRDADPETVHD-W 425
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQ 366
L E+ + + DY IV+H +
Sbjct: 426 P-ELSPTERESA--APDYVAPIVDHSE 449
>gi|378955913|ref|YP_005213400.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|438121678|ref|ZP_20872184.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|357206524|gb|AET54570.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|434943207|gb|ELL49362.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 473
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 ST 462
>gi|392945665|ref|ZP_10311307.1| deoxyribodipyrimidine photolyase [Frankia sp. QA3]
gi|392288959|gb|EIV94983.1| deoxyribodipyrimidine photolyase [Frankia sp. QA3]
Length = 473
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 74/207 (35%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+L WRE++ + A NP + + ++ + P AWK G TG+P +DA
Sbjct: 279 ELAWREFYADVLAANPASARADLTDALADMAYEPPG-----AGFEAWKWGNTGFPIVDAG 333
Query: 291 MRQL---------RRLLDCTYCVC------------------------------------ 305
MRQL RL++ ++ VC
Sbjct: 334 MRQLFAEGWVPNRVRLIEASF-VCKDLHVHWTHGARWFLDHLVDGDLASNHHGWQWTAGT 392
Query: 306 ------------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCII 353
PV+ GR DPDG Y++R++P+LR P ++EPW P G E
Sbjct: 393 GTDAAPYFRVFNPVSQGRTYDPDGTYVRRWIPQLRDVPRAKVHEPWTLPDGPPEG----- 447
Query: 354 SKDYPERIVNHVQASLENKQYLKKEKA 380
YP +V+H + E ++ L + +A
Sbjct: 448 ---YPAPVVDH---AAERREALARYEA 468
>gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|421887537|ref|ZP_16318692.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|379982891|emb|CCF90965.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 473
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 AT 462
>gi|437827515|ref|ZP_20844105.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435304900|gb|ELO80477.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 473
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 AT 462
>gi|419288166|ref|ZP_13830281.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|419293503|ref|ZP_13835562.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
gi|378135668|gb|EHW96971.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|378145700|gb|EHX06856.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
Length = 472
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 77/257 (29%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQL 232
+G Y + P + G + SA+L G LS R+ L +G S + +L
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW--LSEL 276
Query: 233 IWREYFYTMSAHNPYYDQMEKNPICLNIPWLP----ESHPNKEKYLNAWKNGQTGYPFID 288
IWRE++ + YY + K+ C I W +S+P +L AW+ G+TGYP +D
Sbjct: 277 IWREFYRHLMT---YYPSLCKH--CPFIAWTDRVQWQSNP---AHLQAWQKGKTGYPIVD 328
Query: 289 AVMRQLR---------RLLDCTYCV----------------------------------- 304
A MRQL R++ ++ V
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 305 ------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCI 352
P+ G + D +G +I+R++PELR P + ++EPWK +KA +
Sbjct: 389 TGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAMHEPWKWA----QKAGVM 444
Query: 353 ISKDYPERIVNHVQASL 369
+ DYP+ IV+H +A L
Sbjct: 445 L--DYPQPIVDHKEARL 459
>gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|374978733|ref|ZP_09720075.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378444194|ref|YP_005231826.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378449069|ref|YP_005236428.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698653|ref|YP_005180610.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378983306|ref|YP_005246461.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378988099|ref|YP_005251263.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379699921|ref|YP_005241649.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495499|ref|YP_005396188.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|409249149|ref|YP_006884984.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|418790564|ref|ZP_13346337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418792534|ref|ZP_13348278.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797199|ref|ZP_13352888.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|421359233|ref|ZP_15809529.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361496|ref|ZP_15811759.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421368359|ref|ZP_15818550.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421372181|ref|ZP_15822330.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421374664|ref|ZP_15824787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421382279|ref|ZP_15832329.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421385812|ref|ZP_15835828.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392228|ref|ZP_15842185.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421396258|ref|ZP_15846190.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421400178|ref|ZP_15850068.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404739|ref|ZP_15854578.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421409301|ref|ZP_15859095.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421411847|ref|ZP_15861610.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421415345|ref|ZP_15865072.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421424131|ref|ZP_15873782.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421427364|ref|ZP_15876987.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421430232|ref|ZP_15879826.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421433323|ref|ZP_15882887.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421439433|ref|ZP_15888924.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421442555|ref|ZP_15892004.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450738|ref|ZP_15900109.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|422024841|ref|ZP_16371316.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029875|ref|ZP_16376124.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427581636|ref|ZP_18936221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427603498|ref|ZP_18940995.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427651549|ref|ZP_18950660.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|436640261|ref|ZP_20516293.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436700364|ref|ZP_20518373.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436798899|ref|ZP_20523509.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436810852|ref|ZP_20529890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436813402|ref|ZP_20531590.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436843881|ref|ZP_20537850.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436850034|ref|ZP_20541171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436856446|ref|ZP_20545551.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436865820|ref|ZP_20551744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436871908|ref|ZP_20555082.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876020|ref|ZP_20557620.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436888996|ref|ZP_20564997.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436896962|ref|ZP_20569661.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904285|ref|ZP_20574302.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436910239|ref|ZP_20576824.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918491|ref|ZP_20581662.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436925289|ref|ZP_20585721.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436933315|ref|ZP_20589610.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436939337|ref|ZP_20593671.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436947372|ref|ZP_20598268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436959918|ref|ZP_20604115.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436967021|ref|ZP_20607184.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436981142|ref|ZP_20613417.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436992471|ref|ZP_20617976.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437011057|ref|ZP_20624338.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437014671|ref|ZP_20625646.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437035810|ref|ZP_20633736.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437038571|ref|ZP_20634372.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437051679|ref|ZP_20641499.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437059626|ref|ZP_20646111.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437063171|ref|ZP_20647856.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437078673|ref|ZP_20656167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437079419|ref|ZP_20656629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437089721|ref|ZP_20662293.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437108289|ref|ZP_20667498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437125345|ref|ZP_20673956.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437131414|ref|ZP_20677357.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437139986|ref|ZP_20682221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437143205|ref|ZP_20684173.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437149472|ref|ZP_20688185.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437161940|ref|ZP_20695781.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437173033|ref|ZP_20701556.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437175197|ref|ZP_20702660.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437188617|ref|ZP_20710490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437201958|ref|ZP_20711890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437256706|ref|ZP_20715780.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437270514|ref|ZP_20723310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437279339|ref|ZP_20727676.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437300995|ref|ZP_20733201.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437306761|ref|ZP_20734403.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437325921|ref|ZP_20740063.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437345831|ref|ZP_20746714.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437421611|ref|ZP_20754900.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437454122|ref|ZP_20759966.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437469755|ref|ZP_20764770.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437485527|ref|ZP_20769639.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437496066|ref|ZP_20773126.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437514210|ref|ZP_20777810.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437534252|ref|ZP_20781285.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437564713|ref|ZP_20786975.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437570231|ref|ZP_20788266.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437589229|ref|ZP_20794101.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437602115|ref|ZP_20798122.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437618069|ref|ZP_20803050.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437645437|ref|ZP_20808842.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437661816|ref|ZP_20813180.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437668871|ref|ZP_20815310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437697764|ref|ZP_20823044.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437711247|ref|ZP_20826763.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437770988|ref|ZP_20835589.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437812730|ref|ZP_20841584.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437908883|ref|ZP_20850107.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|438016677|ref|ZP_20854727.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438102865|ref|ZP_20865194.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438106770|ref|ZP_20866609.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445172059|ref|ZP_21396334.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445230019|ref|ZP_21405282.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445336068|ref|ZP_21415596.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445349579|ref|ZP_21420104.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445361345|ref|ZP_21423761.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|20141633|sp|P25078.2|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380462320|gb|AFD57723.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|392757693|gb|EJA14577.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392767733|gb|EJA24496.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392769309|gb|EJA26045.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|395984946|gb|EJH94120.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395985681|gb|EJH94848.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395993133|gb|EJI02234.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395998428|gb|EJI07456.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|395999831|gb|EJI08846.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396007478|gb|EJI16431.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396007789|gb|EJI16724.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396011302|gb|EJI20213.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396015295|gb|EJI24177.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396024212|gb|EJI32999.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396025300|gb|EJI34079.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396025367|gb|EJI34144.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396036179|gb|EJI44850.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396044095|gb|EJI52692.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396047929|gb|EJI56496.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396052001|gb|EJI60510.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396057549|gb|EJI66021.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396063035|gb|EJI71444.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396065440|gb|EJI73815.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396071639|gb|EJI79964.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396073314|gb|EJI81619.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|414022992|gb|EKT06439.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024807|gb|EKT08164.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414037852|gb|EKT20594.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414041668|gb|EKT24231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414051248|gb|EKT33362.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|434956362|gb|ELL50096.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434960317|gb|ELL53710.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434965344|gb|ELL58307.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974910|gb|ELL67220.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979708|gb|ELL71686.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434988611|gb|ELL80210.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434991879|gb|ELL83367.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434994567|gb|ELL85908.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434997109|gb|ELL88379.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|435001123|gb|ELL92245.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435008856|gb|ELL99666.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435011225|gb|ELM01947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435014494|gb|ELM05059.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435016807|gb|ELM07315.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435028612|gb|ELM18691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435031223|gb|ELM21212.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435039682|gb|ELM29451.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435043836|gb|ELM33542.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435048614|gb|ELM38178.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435054583|gb|ELM44018.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435057945|gb|ELM47306.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435061891|gb|ELM51094.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435066017|gb|ELM55117.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435066681|gb|ELM55755.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435066743|gb|ELM55816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435075177|gb|ELM64000.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435084791|gb|ELM73359.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435087803|gb|ELM76282.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435091713|gb|ELM80088.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435092363|gb|ELM80724.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435101029|gb|ELM89183.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435103217|gb|ELM91314.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435114679|gb|ELN02471.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435114739|gb|ELN02529.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435118336|gb|ELN06002.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435119440|gb|ELN07044.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435124078|gb|ELN11553.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435130527|gb|ELN17763.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435140781|gb|ELN27726.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435143746|gb|ELN30601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435144110|gb|ELN30964.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435148026|gb|ELN34763.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435155668|gb|ELN42199.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435156855|gb|ELN43322.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435167663|gb|ELN53560.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435171245|gb|ELN56888.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435171495|gb|ELN57131.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435178450|gb|ELN63664.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435186749|gb|ELN71562.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435189523|gb|ELN74148.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435192933|gb|ELN77441.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435200427|gb|ELN84412.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435207911|gb|ELN91342.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435213332|gb|ELN96238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435214640|gb|ELN97388.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435216702|gb|ELN99177.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435226314|gb|ELO07893.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435229683|gb|ELO11034.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435236293|gb|ELO17036.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435241401|gb|ELO21752.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435249557|gb|ELO29375.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435257241|gb|ELO36534.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435259591|gb|ELO38811.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435259803|gb|ELO39016.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435267971|gb|ELO46603.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435272726|gb|ELO51111.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435275866|gb|ELO53912.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435283177|gb|ELO60765.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435288345|gb|ELO65386.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435297334|gb|ELO73620.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435306054|gb|ELO81431.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435318249|gb|ELO91193.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435323450|gb|ELO95478.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435333798|gb|ELP04557.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|435334013|gb|ELP04730.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|444860844|gb|ELX85748.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444864793|gb|ELX89581.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444874304|gb|ELX98566.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444875248|gb|ELX99459.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444884726|gb|ELY08544.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 473
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 AT 462
>gi|339021825|ref|ZP_08645812.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
gi|338751178|dbj|GAA09116.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
Length = 490
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 81/224 (36%), Gaps = 63/224 (28%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNP 255
L+ G LS R+ + A+ T F +L WR++ + + P P
Sbjct: 251 LRAGLLSARQVWHAVSTAATTPALAENAEKF--LSELGWRDFAWMQLFYEPDLAWRNLRP 308
Query: 256 ICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL--------------------- 294
++PW L AW+ GQTGYP +DA MRQL
Sbjct: 309 EFDHMPW-----QKSPALLAAWQQGQTGYPLVDAGMRQLYATGWMHNRVRMVVASFLTKH 363
Query: 295 -------------RRLLDCT---------YCVC-------------PVNFGRRLDPDGIY 319
RL+D +C PV + DP G Y
Sbjct: 364 LLTDWREGEQWFQARLVDADPAQNAMNWQWCAGTGIDASPWFRIFNPVGQSEKFDPTGAY 423
Query: 320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
I+ +VPELRQ P + I+ PWKA + + + YP IV+
Sbjct: 424 IRTWVPELRQMPDKLIHTPWKADASLCRQIGFTPGRSYPNPIVD 467
>gi|390988287|gb|AFM36775.1| cryptochrome, partial [Amphiprion clarkii]
Length = 97
Score = 67.8 bits (164), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 238 FYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
FYT + +NP +D+ME NPIC+ IPW + +P + L W G+TG+P+IDA+M QLR+
Sbjct: 1 FYTAATNNPCFDKMESNPICVQIPW--DRNP---EALAKWAEGRTGFPWIDAIMTQLRQ 54
>gi|418844143|ref|ZP_13398935.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418858210|ref|ZP_13412829.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418865510|ref|ZP_13419988.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418870175|ref|ZP_13424602.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|392814963|gb|EJA70907.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392827906|gb|EJA83605.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392832351|gb|EJA87972.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|392834325|gb|EJA89934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
Length = 473
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 AT 462
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,236,353,064
Number of Sequences: 23463169
Number of extensions: 325973328
Number of successful extensions: 610949
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2320
Number of HSP's successfully gapped in prelim test: 1283
Number of HSP's that attempted gapping in prelim test: 599955
Number of HSP's gapped (non-prelim): 9191
length of query: 407
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 262
effective length of database: 8,957,035,862
effective search space: 2346743395844
effective search space used: 2346743395844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)