BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6304
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 234/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF+ +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L +W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-ENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 214/465 (46%), Gaps = 106/465 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 53 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 112
Query: 63 CE--------GVKPYQS------FPTGSHP---PRY-------QPCKTLLNFRDLSGLPP 98
+ VK Y S F SH P + +P + +F ++G P
Sbjct: 113 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPS 172
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKYPEMDFGDPLIRWLGGETEAL 157
K ++ + + + + +S VP E+ +K E P GGE+EAL
Sbjct: 173 CAKSELVMSYSSLPPIGDIGNLGIS---EVPSLEELGYKDDEQADWTPF---RGGESEAL 226
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALH 211
+L + +S + +++N P L T S LKFGCLS R FY L
Sbjct: 227 KRLTKSISDK-------AWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 279
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW E H
Sbjct: 280 NIYKDVKKHTSPP-VSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW-NEDHA--- 334
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL-----------------------------------RR 296
L AW++G+TGYP+IDA+M QL R
Sbjct: 335 -MLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERL 393
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
L+D + + P++FG++ DPDG YI+ ++P L+ P QYI
Sbjct: 394 LIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYI 453
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
YEPW APL VQ KANCI+ KDYP+ +V H AS E K+ + + A
Sbjct: 454 YEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYA 498
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 196
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 197 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 244
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 245 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 293
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 294 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 349 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARMAVACFLTRGDL 403
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 404 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 463
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 464 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 520
Query: 382 CIINKD 387
+N++
Sbjct: 521 YKVNRE 526
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 196
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 197 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 244
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 245 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 293
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 294 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 349 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDL 403
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 404 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 463
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 464 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 520
Query: 382 CIINKD 387
+N++
Sbjct: 521 YKVNRE 526
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/486 (30%), Positives = 215/486 (44%), Gaps = 140/486 (28%)
Query: 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD--- 62
M +G NR+RFL + L DLD QL+ +LF+V+G P +F ++ + L FE D
Sbjct: 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEP 136
Query: 63 --------------CEGVKPYQ-------------SFPTGSHPPRYQPC----------K 85
EGV+ + G P YQ K
Sbjct: 137 YSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPK 196
Query: 86 TLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREV-SLFQTVPKPEQF--HKYPEMDF 142
L L +P PK++++ +S + ++ Q V +PE+ +K+P
Sbjct: 197 VLGVPEKLKNMPTPPKDEVE--------QKDSAAYDCPTMKQLVKRPEELGPNKFP---- 244
Query: 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCL 201
GGETEAL ++ E L EI + + +P+ P T+ S LKFGCL
Sbjct: 245 --------GGETEALRRMEESLKDEIWVAR---FEKPNTAPNSLEPSTTVLSPYLKFGCL 293
Query: 202 SVRRFYWALHDHFNTIHEGRPPSH----FNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
S R F L + R P H ++ GQL+WRE++YT++A P +D+M N C
Sbjct: 294 SARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC 348
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR--------------------- 296
+ IPW + HP+ +L AW +G+TGYPFIDA+MRQLR+
Sbjct: 349 MQIPW--QEHPD---HLEAWTHGRTGYPFIDAIMRQLRQEGWIHNLARHAVACFLTRGDL 403
Query: 297 --------------LLDCTYCV---------------------CPVNFGRRLDPDGIYIK 321
LLD + + PV FG++ DP G YI+
Sbjct: 404 WISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIR 463
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+YVPEL ++P IYEPWKA L Q C++ DYP RIV H + +K+ +K+ A
Sbjct: 464 KYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKH---EVVHKENIKRMGAA 520
Query: 382 CIINKD 387
+N++
Sbjct: 521 YKVNRE 526
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/448 (22%), Positives = 171/448 (38%), Gaps = 107/448 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---- 59
G G R FL + + +L L+ G +L + G P + ++ +++N + +
Sbjct: 51 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 110
Query: 60 ---EQDCEGVKPYQSFPTGSHPPRY------QPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
E D E Q G Y P + +DL L + ++DI+ + ++
Sbjct: 111 TQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKIS 170
Query: 111 ----FGTMSESLQR-EVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKL---- 160
F S+ L + L T P PE F P+++F ++ + GGET L +L
Sbjct: 171 IRPCFFAPSQLLPSPNIKLELTAPPPEFF---PQINFDHRSVLAFQGGETAGLARLQDYF 227
Query: 161 --NERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
+RL +E + G S++ SP L GCLS R Y + +
Sbjct: 228 WHGDRLKDYKETRNGMVGADYSSKFSP-----------WLALGCLSPRFIYQEVK-RYEQ 275
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN--IPWLPESHPNKEKYL 274
+H+ I +L+WR++F ++ Y +++ LN PW + +
Sbjct: 276 ERVSNDSTHWLIF-ELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQED-----QVRF 327
Query: 275 NAWKNGQTGYPFIDAVMRQLRR----------------------------------LLDC 300
W++GQTGYP +DA MR+L L+D
Sbjct: 328 ELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDY 387
Query: 301 TYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
C N+ ++ DP G Y++ ++PEL+ P I++PW
Sbjct: 388 DVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPW 447
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
Q++ + DYP VN Q+
Sbjct: 448 LLSATEQKQWGVQLGVDYPRPCVNFHQS 475
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 85/263 (32%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQ 231
+G Y + P + G + SA+L G LS R+ + L + + G N +
Sbjct: 219 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLN---E 274
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP-------ESHPNKEKYLNAWKNGQTGY 284
LIWRE++ + ++P +C + P++ +S+P +L AW+ G+TGY
Sbjct: 275 LIWREFYRHLITYHP--------SLCKHRPFIAWTDRVQWQSNP---AHLQAWQEGKTGY 323
Query: 285 PFIDAVMRQLR---------RLLDCTYCV------------------------------- 304
P +DA MRQL R++ ++ V
Sbjct: 324 PIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQ 383
Query: 305 ----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
P G + D +G +I++++PELR P + ++EPWK +K
Sbjct: 384 WAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QK 439
Query: 349 ANCIISKDYPERIVNHVQASLEN 371
A ++ DYP+ IV H +A ++
Sbjct: 440 AG--VTLDYPQPIVEHKEARVQT 460
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 36/305 (11%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E PY
Sbjct: 51 RVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE---PYGR 107
Query: 72 FPTG--SHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE------VS 123
G + + + + + L P + + +G ++ Q + +
Sbjct: 108 DRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVAT 167
Query: 124 LFQTVP-KPEQFHKYPEMDFGD-PLIRWLG-----------GETEALIKLNERLSQEIES 170
+ V PEQ + + P ++ LG GET A+ +L E + I
Sbjct: 168 PTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIAD 227
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITG 230
+ + P ALKFG + +R+ + A + +
Sbjct: 228 YDPQRNFPAEAGTSGLSP------ALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQ 281
Query: 231 Q-LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
Q L WRE++ H P + PW N+E AW QTGYP +DA
Sbjct: 282 QELAWREFYQHALYHFPSLADGPYRSLWQQFPW-----ENREALFTAWTQAQTGYPIVDA 336
Query: 290 VMRQL 294
MRQL
Sbjct: 337 AMRQL 341
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
P + ++ D YIKR++PELR + + + + I + YP IVNH
Sbjct: 408 PASQAKKFDATATYIKRWLPELRHVHPKDL---------ISGEITPIERRGYPAPIVNH- 457
Query: 366 QASLENKQY 374
+L KQ+
Sbjct: 458 --NLRQKQF 464
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 36/305 (11%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E PY
Sbjct: 50 RVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE---PYGR 106
Query: 72 FPTG--SHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE------VS 123
G + + + + + L P + + +G ++ Q + +
Sbjct: 107 DRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVAT 166
Query: 124 LFQTVP-KPEQFHKYPEMDFGD-PLIRWLG-----------GETEALIKLNERLSQEIES 170
+ V PEQ + + P ++ LG GET A+ +L E + I
Sbjct: 167 PTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIAD 226
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITG 230
+ + P ALKFG + +R+ + A + +
Sbjct: 227 YDPQRNFPAEAGTSGLSP------ALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQ 280
Query: 231 Q-LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
Q L WRE++ H P + PW N+E AW QTGYP +DA
Sbjct: 281 QELAWREFYQHALYHFPSLADGPYRSLWQQFPW-----ENREALFTAWTQAQTGYPIVDA 335
Query: 290 VMRQL 294
MRQL
Sbjct: 336 AMRQL 340
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
P + ++ D YIKR++PELR + + + + I + YP IVNH
Sbjct: 407 PASQAKKFDATATYIKRWLPELRHVHPKDL---------ISGEITPIERRGYPAPIVNH- 456
Query: 366 QASLENKQY 374
+L KQ+
Sbjct: 457 --NLRQKQF 463
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 133/350 (38%), Gaps = 57/350 (16%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFE 60
FP T G R FL+ECL DL + L G L I G P I L ++ T +
Sbjct: 88 FPKT---GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHK 144
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS---GLPPRPKEDIDFRHV----TFGT 113
+ C + Q K + N L G K+D+ F +
Sbjct: 145 ETCSEEVDVERLVN-------QGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQ 197
Query: 114 MSESLQREVSLFQTVPKPEQFHKYPEMD-FGDP---------------LIRWLGGETEAL 157
+S++ + S+ + P P +D +GD +R++GGE+ +
Sbjct: 198 FRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGV 257
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGP--PTSQSAALKFGCLSVRRFYWALHDHFN 215
++ E + K + + + + GP T S L FGC+S R Y + +
Sbjct: 258 GRVFEYFWK-----KDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRY-- 310
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
S + + +LIWR+YF +S P +N W +K
Sbjct: 311 EKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVNGKW-----SQDQKLFE 365
Query: 276 AWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRLDPD 316
+W++ +TGYP IDA M++L R + C++ V + R+ +
Sbjct: 366 SWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAE 415
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 57/350 (16%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFE 60
FP T G R FL+ECL DL + L G L I G P I L ++ T +
Sbjct: 87 FPKT---GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHK 143
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS---GLPPRPKEDIDFRHV----TFGT 113
+ C + Q K + N L G K+D+ F +
Sbjct: 144 ETCSEEVDVERLVN-------QGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQ 196
Query: 114 MSESLQREVSLFQTVPKPEQFHKYPEMD-FGDP---------------LIRWLGGETEAL 157
+S++ + S+ + P P +D +GD +R++GGE+ +
Sbjct: 197 FRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGV 256
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGP--PTSQSAALKFGCLSVRRFYWALHDHFN 215
++ E + K + + + + GP T S L FGC+S R Y + +
Sbjct: 257 GRVFEYFWK-----KDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRY-- 309
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
S + + +LIWR+YF +S P + W +K
Sbjct: 310 EKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKW-----SQDQKLFE 364
Query: 276 AWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRLDPD 316
+W++ +TGYP IDA M++L R + C++ V + R+ +
Sbjct: 365 SWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAE 414
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 57/350 (16%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFE 60
FP T G R FL+ECL DL + L G L I G P I L ++ T +
Sbjct: 88 FPKT---GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHK 144
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS---GLPPRPKEDIDFRHV----TFGT 113
+ C + Q K + N L G K+D+ F +
Sbjct: 145 ETCSEEVDVERLVN-------QGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQ 197
Query: 114 MSESLQREVSLFQTVPKPEQFHKYPEMD-FGDP---------------LIRWLGGETEAL 157
+S++ + S+ + P P +D +GD +R++GGE+ +
Sbjct: 198 FRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGV 257
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGP--PTSQSAALKFGCLSVRRFYWALHDHFN 215
++ E + K + + + + GP T S L FGC+S R Y + +
Sbjct: 258 GRVFEYFWK-----KDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRY-- 310
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
S + + +LIWR+YF +S P + W +K
Sbjct: 311 EKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKW-----SQDQKLFE 365
Query: 276 AWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRLDPD 316
+W++ +TGYP IDA M++L R + C++ V + R+ +
Sbjct: 366 SWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAE 415
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 112/298 (37%), Gaps = 67/298 (22%)
Query: 15 FLLECLADLDRQLKSHGGQLFIVQGSPISIFQK------------------LKRELNFTK 56
F++ L +LD +L+ G +L + G + + + R+ K
Sbjct: 53 FMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFNKVDAIYVNEDYTPFSISRDEKIRK 112
Query: 57 LCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+C E E K Y+ + + T + ++S + R E ++ +F
Sbjct: 113 VCEENGIE-FKAYEDYLLTPKSLFHHRNFTSF-YNEVSKVKVREPETME---GSFDVTDS 167
Query: 117 SLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVY 176
S+ V T K E PL R GG E L L+ + F+ Y
Sbjct: 168 SMN--VDFLLTFKKIES-----------PLFR--GGRREGLYLLHRNVD-----FRRRDY 207
Query: 177 LSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWRE 236
+ + L S LKFG +S+R Y+ +G+ +L WR+
Sbjct: 208 PAENNNYRL-------SPHLKFGTISMREAYYT--------QKGKE----EFVRELYWRD 248
Query: 237 YFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+F ++ +NP+ NI W N E Y AWK G+TGYP IDA MR L
Sbjct: 249 FFTLLAYYNPHVFGHCYRREYDNISW-----ENNESYFEAWKEGRTGYPIIDAGMRML 301
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
G + DP+G Y++R++PEL + P +I+ PW AP V + A + +YP IV +A
Sbjct: 423 GYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEA 480
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+L+WR++ Y + H P+ + +P PW E AW G+TG P +D
Sbjct: 242 VAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPW-----QEDEALFQAWYEGKTGVPLVD 296
Query: 289 AVMRQL 294
A MR+L
Sbjct: 297 AAMREL 302
>pdb|4F79|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase Mutant
(E375q) In Complex With Salicin 6-Phosphate
pdb|4GPN|A Chain A, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
Mutant) From Streptococcus Mutans Ua150 In Complex With
Gentiobiose 6-Phosphate.
pdb|4GPN|B Chain B, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
Mutant) From Streptococcus Mutans Ua150 In Complex With
Gentiobiose 6-Phosphate
Length = 480
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 239 YTMSAH---NPYYDQME-----KNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290
+ + AH NPYYD +E KNP W + P +Y W P +
Sbjct: 319 FVIDAHRENNPYYDYLETEDLVKNPYVKASDWDWQIDPQGLRYALNWFTDMYHLPLF--I 376
Query: 291 MRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI-YEPW 339
++ +D V+ R+D G +IK + + + ++ + Y PW
Sbjct: 377 VQNGFGAIDQVEADGMVHDDYRIDYLGAHIKEMIKAVDEDGVELMGYTPW 426
>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
Length = 211
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 281 QTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+TG PF++ Y PV + DP G+Y K +++F I P++
Sbjct: 128 ETGLPFVE------------VYVDVPVEVAEQRDPKGLYKKAREGVIKEF--TGISAPYE 173
Query: 341 APLG--VQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
AP V K + +D ++I+++ L+ K YL +K
Sbjct: 174 APANPEVHVKNYELPVQDAVKQIIDY----LDTKGYLPAKK 210
>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
Length = 197
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 281 QTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+TG PF++ Y PV + DP G+Y K +++F I P++
Sbjct: 106 ETGLPFVE------------VYVDVPVEVAEQRDPKGLYKKAREGVIKEF--TGISAPYE 151
Query: 341 APLG--VQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
AP V K + +D ++I+++ L+ K YL +K
Sbjct: 152 APANPEVHVKNYELPVQDAVKQIIDY----LDTKGYLPAKK 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,865,465
Number of Sequences: 62578
Number of extensions: 626155
Number of successful extensions: 1242
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 55
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)