BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6304
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 189/467 (40%), Positives = 244/467 (52%), Gaps = 105/467 (22%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +G+NR +FLLE LADLDRQL+ GGQL++ +G+ +++ ++L ELN KLCFEQDC
Sbjct: 49 GTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDC 108
Query: 64 EGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
E + P Q T G PP YQ L+ D+
Sbjct: 109 EPIWKARDDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQ---MFLHTVDI 165
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVP-KPEQFHKYPEMDFGDPLI---RW 149
G PPRP F V FG++ L +EV L Q PE F Y E G+P I +W
Sbjct: 166 IGKPPRPVAAPSFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYE---GNPDISHQQW 222
Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
+GGET+AL L RL QE E+F G +L Q P+ PPTS SAAL+FGCLSVR FYW
Sbjct: 223 MGGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWC 282
Query: 210 LHDHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
+HD + + R P +ITGQLIWREYFYTMS HNP+Y +ME NPICLNIPW
Sbjct: 283 VHDLYEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPW---- 338
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQ--------------------------------- 293
+ K+ L+ WK G+TG+P IDA MRQ
Sbjct: 339 YEPKDDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQ 398
Query: 294 --LRRLLDCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELR 328
L+ LLD + VC P+ RRLDP G Y++RY+PEL+
Sbjct: 399 HFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELK 458
Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
P Y++EPWKAPL VQ++ CI+ +DYP +++ AS N +
Sbjct: 459 NLPTLYVHEPWKAPLDVQKECGCIVGRDYPAPMIDLAAASRANANTM 505
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 308 bits (788), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 238/477 (49%), Gaps = 98/477 (20%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
GT +GYNR +FLLE LADLDRQ + GGQL + +G +++ ++L ELN KLC+EQDC
Sbjct: 51 GTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDC 110
Query: 64 EGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
E + P + T G PP YQ L+ ++
Sbjct: 111 EPIWKERDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQ---MFLHTVNI 167
Query: 94 SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
G PPRP +F +V FG + L E+ L Q +P P+ F + + + +W+GGE
Sbjct: 168 IGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGE 227
Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
T AL L RL QE E+F+ G YL Q P++ GP TS SAAL+FGCLSVR FYW +HD
Sbjct: 228 TRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDL 287
Query: 214 FNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
F + + P +ITGQLIWREYFYTMS NP+Y +ME+NPICLNIPW + +
Sbjct: 288 FAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLNIPW----YKPE 343
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQ-----------------------------------LR 295
+ L WK G+TG+P IDA MRQ L+
Sbjct: 344 DDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLK 403
Query: 296 RLLDCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
LLD + C CP+ RRLDP G Y+KRY+PEL +P
Sbjct: 404 YLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPA 463
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYP 389
Q+++EPWKA Q + C+I + YP +V+ S N + + + P
Sbjct: 464 QFVHEPWKASREQQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREKLVDGGSTP 520
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 285 bits (728), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 234/477 (49%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT ++GYNR RFLL+ L D+D QL++ G+L + +G P IF++L ++ ++C E
Sbjct: 48 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61 QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
QDCE + P T G PP YQ L+
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ GLPPRP D TF + R + LF+ +P PE F+ Y + I W
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL+ L+ERL E +F+ G YL NQ P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ PN E L +W+ GQTG+P ID MRQ
Sbjct: 343 -AKPN-ENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L P ++++EPW+ QE+ C+I YPERI++ A N +K + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 233/477 (48%), Gaps = 104/477 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
GT +GYNR RFLL+ L DLD QL+S G+LF+ +G P IF++L ++ K+C E
Sbjct: 48 GTKSVGYNRMRFLLDSLQDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAE 107
Query: 61 QDCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNF 90
DCE G++ + G PP YQ L+
Sbjct: 108 LDCEPIWNERDESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQ---MFLHT 164
Query: 91 RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
+ G+PPRP D TF ++ L++ + F VP PE F+ Y + I W
Sbjct: 165 VQIIGVPPRPAIDAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
GGET+AL L ERL E +F+ G YL NQ +P++ P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIHEG------RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
HD F + + +ITGQLIWREYFYTMS +NP YD+ME N ICL IPW
Sbjct: 285 HDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
+ P+ E L W+ GQTG+P ID MRQ
Sbjct: 343 -AKPD-ENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
L+ LLD + V CPV +RLDP+G+YI+RYVPE
Sbjct: 401 LKHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
L+ P +YI+EPW+ Q K C+I YPERI++ +A N + + + I
Sbjct: 461 LKNLPKEYIHEPWRLSAEQQVKFECLIGVHYPERIIDLSKAVKRNMMAMTALRNSLI 517
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 180/345 (52%), Gaps = 65/345 (18%)
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
++ G PPRP F V FG + L E+ LFQ P PE F Y E + RW G
Sbjct: 119 NIIGEPPRPVGAPSFEFVEFGRLPSILSTELKLFQRAPVPEDFGIYYEGNADIARQRWTG 178
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE +AL L RL QE E+F+ G YL Q PD PP+S SAAL+FGCLSVR FYW +H
Sbjct: 179 GEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPSSMSAALRFGCLSVRMFYWCVH 238
Query: 212 DHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
D F + + P +ITGQLIWREYFYTMS HNP+Y ME NPICLNIPW +
Sbjct: 239 DLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPHYAVMELNPICLNIPW----YE 294
Query: 269 NKEKYLNAWKNGQTGYPFIDAVMRQ----------------------------------- 293
K+ L+ WK G+TG+P IDA MRQ
Sbjct: 295 AKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQHF 354
Query: 294 LRRLLDCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELRQF 330
L+ LLD + VC PV RRLDP G Y+KRY+PEL +F
Sbjct: 355 LKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLDPKGEYVKRYLPELEKF 414
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
P Y++EPWKAP +QE+ C+I KDYP +VN + + N +
Sbjct: 415 PALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKM 459
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 220/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + +H+ +Q VP E+ +P G + W G
Sbjct: 179 EL---PKKPVGAVSSQHME--NCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 230
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL++L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 231 GETEALVRLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 284 YYRLWDLYRKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 340
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 341 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 397
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 398 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 457
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ ANCII DYP IVNH + S N + +K+
Sbjct: 458 PSRYIYEPWNAPESVQKAANCIIGVDYPRPIVNHAETSRLNIERMKQ 504
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 228 bits (580), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 451 PESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 217/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G + L + VP E+ + G W G
Sbjct: 158 --SKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 222/458 (48%), Gaps = 94/458 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPK-PEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
+L L ++ + +F+ +N L PT S L+FGCLS R FY+ L D +
Sbjct: 219 TRLERHLERKASVANFERPRMNAN----SLLASPTGLSPYLRFGCLSCRLFYFKLTDLYK 274
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
+ + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L
Sbjct: 275 KVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALA 328
Query: 276 AWKNGQTGYPFIDAVMRQLRR-----------------------------------LLDC 300
W G+TG+P+IDA+M QLR+ LLD
Sbjct: 329 KWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDA 388
Query: 301 TY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
+ C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW
Sbjct: 389 DWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPW 448
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
AP +Q+ A CII +YP+ +VNH +AS N + +K+
Sbjct: 449 NAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 218/467 (46%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 59 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 118
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + L++
Sbjct: 119 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM 178
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P + + + + +Q VP E+ +P G + W G
Sbjct: 179 EL---PKKPAVAVSSQQME--SCRAEIQENHDDTYGVPSLEEL-GFPTEGLGPAV--WQG 230
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 231 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 283
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 284 YYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW--DR 340
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 341 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 397
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G YI+RY+P+L+ F
Sbjct: 398 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGF 457
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP IVNH + S N + +K+
Sbjct: 458 PSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 504
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 216/462 (46%), Gaps = 102/462 (22%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ +TL+
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLV--- 157
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
S + P G L + VP E+ + G W G
Sbjct: 158 --SKMEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTD---GLSSAVWPG 212
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GETEAL +L L E +++ + + L PT S L+FGCLS R FY+ L
Sbjct: 213 GETEALTRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
D + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P
Sbjct: 271 DLYKKVKKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP--- 324
Query: 272 KYLNAWKNGQTGYPFIDAVMRQLRR----------------------------------- 296
+ L W G+TG+P+IDA+M QLR+
Sbjct: 325 EALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 297 LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
LLD + C CPV FGRR DP+G YI+RY+P LR FP +YI
Sbjct: 385 LLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYI 444
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
Y+PW AP G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 445 YDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E + KL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K S R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLASEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVPKPEQF-HKY-----PEMDF---GDPLIRWLGGETEAL 157
R E++ EV T P + KY E+ F G P W GGETEAL
Sbjct: 159 RMEPLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P VQ+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 220/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +LF+++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E +++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KRNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQ 486
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 219/456 (48%), Gaps = 90/456 (19%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F G+ ++G NR+RFLL+CL DLD L+ +L +++G P +F +L +E N TKL E
Sbjct: 41 FAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEY 100
Query: 62 DCE--------GVKPYQSFPTGSHPPRYQPCKTLLNFRDL----SGLPP---RPKEDIDF 106
D E +K + R TL + + G PP + + +
Sbjct: 101 DSEPFGKERDAAIKKLATEAGVEVIVRIS--HTLYDLDKIIELNGGQPPLTYKRFQTLIS 158
Query: 107 RHVTFGTMSESLQREVSLFQTVP-KPEQFHKY-----PEMDF---GDPLIRWLGGETEAL 157
+ E++ EV T P + KY E+ F G W GGETEAL
Sbjct: 159 KMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL 218
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
+L L E ++ + + L PT S L+FGCLS R FY+ L D + +
Sbjct: 219 TRLERHL--ERRAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV 276
Query: 218 HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAW 277
+ P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW + +P + L W
Sbjct: 277 KKNSSPP-LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPW--DKNP---EALAKW 330
Query: 278 KNGQTGYPFIDAVMRQLRR-----------------------------------LLDCTY 302
G+TG+P+IDA+M QLR+ LLD +
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADW 390
Query: 303 ---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKA 341
C CPV FGRR DP+G YI+RY+P LR FP +YIY+PW A
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450
Query: 342 PLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P G+Q+ A C+I +YP+ +VNH +AS N + +K+
Sbjct: 451 PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQ 486
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 221/471 (46%), Gaps = 120/471 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 60 FAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEY 119
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G PP Y+ + +++
Sbjct: 120 DSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM 179
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQT----VPKPEQFHKYPEMDFGDPLI 147
+L PK+ + VT M ES + E+ VP E+ +P G +
Sbjct: 180 EL------PKKPVGL--VTSQQM-ESCRAEIQENHDETYGVPSLEEL-GFPTEGLGPAV- 228
Query: 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLS 202
W GGETEAL +L++ L ++ +++N P L PT S L+FGCLS
Sbjct: 229 -WQGGETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLS 280
Query: 203 VRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW 262
R FY+ L D + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW
Sbjct: 281 CRLFYYRLWDLYKKVKRNSTPP-LSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPW 339
Query: 263 LPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR-------------------------- 296
+ +P L W G+TG+P+IDA+M QLR+
Sbjct: 340 --DRNPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWE 394
Query: 297 ---------LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPE 326
LLD + C CPV FGRR DP G YI+RY+P+
Sbjct: 395 SGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPK 454
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
L+ FP +YIYEPW AP +Q+ A CII DYP IVNH + S N + +K+
Sbjct: 455 LKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQ 505
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 152/467 (32%), Positives = 221/467 (47%), Gaps = 112/467 (23%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61
F + +G NR+RFLL+ L DLD L+ +LF+V+G P +F +L +E T+L FE
Sbjct: 50 FAASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEY 109
Query: 62 DCE-----------------GVKPYQSFP------------TGSHPP-RYQPCKTLLNFR 91
D E GV+ G+ PP Y+ + +++
Sbjct: 110 DSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRM 169
Query: 92 DLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLG 151
+L P +P I + + T +Q VP E+ +P D P + W G
Sbjct: 170 EL---PKKPVSSIVSQQME--TCKVDIQENHDDVYGVPSLEEL-GFP-TDGLAPAV-WQG 221
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSP-----DLTGPPTSQSAALKFGCLSVRRF 206
GETEAL +L++ L ++ +++N P L PT S L+FGCLS R F
Sbjct: 222 GETEALARLDKHLERK-------AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLF 274
Query: 207 YWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
Y+ L + + + P ++ GQL+WRE+FYT + +NP +D+ME NPIC+ IPW +
Sbjct: 275 YYRLWELYKKVKRNSTPP-LSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPW--DK 331
Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQLRR------------------------------ 296
+P L W G+TG+P+IDA+M QLR+
Sbjct: 332 NPEA---LAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 388
Query: 297 -----LLDCTY---------------------CVCPVNFGRRLDPDGIYIKRYVPELRQF 330
LLD + C CPV FGRR DP G Y+KRY+P+L+ F
Sbjct: 389 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGF 448
Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
P +YIYEPW AP VQ+ A CII DYP+ +VNH + S N + +K+
Sbjct: 449 PSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQ 495
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 199 bits (506), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 214/465 (46%), Gaps = 106/465 (22%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
PG+ G NR RFLLE L DLD LK G +L + +G P + + +E +LCFE D
Sbjct: 72 PGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYD 131
Query: 63 CE--------GVKPYQS------FPTGSHP---PRY-------QPCKTLLNFRDLSGLPP 98
+ VK Y S F SH P + +P + +F ++G P
Sbjct: 132 TDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPS 191
Query: 99 RPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQF-HKYPEMDFGDPLIRWLGGETEAL 157
K ++ + + + + +S VP E+ +K E P GGE+EAL
Sbjct: 192 CAKSELVMSYSSLPPIGDIGNLGIS---EVPSLEELGYKDDEQADWTPF---RGGESEAL 245
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPD------LTGPPTSQSAALKFGCLSVRRFYWALH 211
+L + +S + +++N P L T S LKFGCLS R FY L
Sbjct: 246 KRLTKSISDK-------AWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 298
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ + + + P ++ GQL+WRE+FYT + P +D+M+ N IC IPW E H
Sbjct: 299 NIYKDVKKHTSPP-VSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPW-NEDH---- 352
Query: 272 KYLNAWKNGQTGYPFIDAVMRQL-----------------------------------RR 296
L AW++G+TGYP+IDA+M QL R
Sbjct: 353 AMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERL 412
Query: 297 LLDCTYCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
L+D + + P++FG++ DPDG YI+ ++P L+ P QYI
Sbjct: 413 LIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYI 472
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
YEPW APL VQ KANCI+ KDYP+ +V H AS E K+ + + A
Sbjct: 473 YEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYA 517
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 217/471 (46%), Gaps = 95/471 (20%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLC 58
PG+ G R RFLLE L+DLD +L+ G +L ++ G ++ N KLC
Sbjct: 63 PGSARAGVARVRFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLC 122
Query: 59 FEQDCEGV-----KPYQSFPTGSHPPRYQPCK-TLLNFRDL----SGLPPRPKEDIDFRH 108
FE D E K F S + P TL + ++ G PP +
Sbjct: 123 FESDTEPYALARDKKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF---V 179
Query: 109 VTFGTMSESLQREVSLFQTVPKPEQFHKYP-----EMDFGD----PLIRWLGGETEALIK 159
G E + E S V ++ P E+ +GD L + GGETEAL +
Sbjct: 180 AIAGEPPEPIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKR 239
Query: 160 LNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHF-NT 216
+ E L + + F+ S L T S LKFGCLS R FY + D + +T
Sbjct: 240 MRESLHDKEWVAKFEKP---KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRST 296
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNA 276
PP ++TGQL+WR++FYT++ P +DQM+ N IC IPW E+ A
Sbjct: 297 KKHTNPP--VSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWT-----ENEELFPA 349
Query: 277 WKNGQTGYPFIDAVMRQLRR-----------------------------------LLDCT 301
W++G+TGYP+IDA+M QLR+ L+D
Sbjct: 350 WRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSD 409
Query: 302 YCV---------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
+ + P +FG++ DP+G YI+ ++P L+ P +YIYEPW
Sbjct: 410 WAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWT 469
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPER 391
APL +Q+KANCII KDYP+ +V+H AS E K+ + + A+ ++ D P++
Sbjct: 470 APLSIQKKANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDK 520
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 167/445 (37%), Gaps = 107/445 (24%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT-----------KLCFE 60
R RFLLE +ADL R L+ G L + +G P + L EL +L E
Sbjct: 57 RARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVE 116
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS-GLPPRPKEDIDFR---HVTFGTMSE 116
+D + + P R TL++ DL + P+ DFR +
Sbjct: 117 RDLQAALAPLNVPV-----RSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPP 171
Query: 117 SLQREVSLFQTVPKPEQFHKYPEMDFGDP------LIRWLGGETEALIKLNERLSQE--I 168
P + + ++ P ++++ GGET L +L E Q+ +
Sbjct: 172 LPAPAKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLL 231
Query: 169 ESFKSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGR--PPS 224
+S+K Q + G S SA L GCLS R +H+ T R S
Sbjct: 232 KSYK-------QTRNGMLGADYSSKFSAWLALGCLSAR----YIHEQVQTYETKRIKNDS 280
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY--LNAWKNGQT 282
+ + +L+WR+YF ++A + L+IPW KE + W+ GQT
Sbjct: 281 TYWLIFELLWRDYFRFIAAKHGDRLFYTAGLRGLDIPW-------KEDWERFELWRTGQT 333
Query: 283 GYPFIDAVMRQL----------------------------------RRLLDCTYCVCPVN 308
G+P +DA MR+L RL+D N
Sbjct: 334 GFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGN 393
Query: 309 F---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQE 347
+ R DPDG Y+K ++PEL P ++EPWK Q+
Sbjct: 394 WNYTAGVGNDARGFRFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQK 453
Query: 348 KANCIISKDYPERIVNHVQASLENK 372
+ + DYP+ +V+ Q++ N+
Sbjct: 454 RFGVRLGVDYPQPVVDLFQSAAANE 478
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 163/448 (36%), Gaps = 113/448 (25%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFTKLCFE 60
FP T G +R +FLLE + DL LK G L + +G P + + L ++L N + +
Sbjct: 53 FPKT---GPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLH 109
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTL-LNFRDLSGLPPRPKEDIDFRHVT-----FGTM 114
++ + T Q C L + ++ G +ED+ FRH++ +
Sbjct: 110 EEATKEE------TDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQF 163
Query: 115 SESLQREVSLFQTVPKPEQFHKYP------------EMDFGDPLIR------WLGGETEA 156
++++ + + T P++ P + D DPL GGE++A
Sbjct: 164 RKAVETQGKVRPTFQMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQA 223
Query: 157 LIKLNERLSQE--IESFKSGVYLSNQVSPDLTGPPTSQSAA--LKFGCLSVRRFYWALHD 212
L +L + + S+K L G S A L GC+S R Y +
Sbjct: 224 LQRLEHYFWETNLVASYKD-------TRNGLIGLDYSTKFAPWLALGCVSPRYIY----E 272
Query: 213 HFNTIHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+ R S + + +L+WR+YF ++ + +IPW
Sbjct: 273 QIGKYEKERTANQSTYWVIFELLWRDYFRFVALKYGRRIFFLRGLQDKDIPW-----KRD 327
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLR--------------------------------RLL 298
K +AWK G+TG PF+DA MR+L L
Sbjct: 328 PKLFDAWKEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYL 387
Query: 299 DCTYCVCPVNFGRRL------------------------DPDGIYIKRYVPELRQFPIQY 334
Y VC N+G L D G YI+ +VPEL+Q
Sbjct: 388 LVDYDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGD 446
Query: 335 IYEPWKAPLGVQEKANCIISKDYPERIV 362
+ PW AN + + YP IV
Sbjct: 447 AHTPWALSNASLAHANLSLGETYPYPIV 474
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/448 (22%), Positives = 171/448 (38%), Gaps = 107/448 (23%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF---- 59
G G R FL + + +L L+ G +L + G P + ++ +++N + +
Sbjct: 51 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 110
Query: 60 ---EQDCEGVKPYQSFPTGSHPPRY------QPCKTLLNFRDLSGLPPRPKEDIDFRHVT 110
E D E Q G Y P + +DL L + ++DI+ + ++
Sbjct: 111 TQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKIS 170
Query: 111 ----FGTMSESLQR-EVSLFQTVPKPEQFHKYPEMDFGD-PLIRWLGGETEALIKL---- 160
F S+ L + L T P PE F P+++F ++ + GGET L +L
Sbjct: 171 IRPCFFAPSQLLPSPNIKLELTAPPPEFF---PQINFDHRSVLAFQGGETAGLARLQDYF 227
Query: 161 --NERLS--QEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT 216
+RL +E + G S++ SP L GCLS R Y + +
Sbjct: 228 WHGDRLKDYKETRNGMVGADYSSKFSP-----------WLALGCLSPRFIYQEVK-RYEQ 275
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN--IPWLPESHPNKEKYL 274
+H+ I +L+WR++F ++ Y +++ LN PW + +
Sbjct: 276 ERVSNDSTHWLIF-ELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQED-----QVRF 327
Query: 275 NAWKNGQTGYPFIDAVMRQLRR----------------------------------LLDC 300
W++GQTGYP +DA MR+L L+D
Sbjct: 328 ELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDY 387
Query: 301 TYCVCPVNF---------------------GRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
C N+ ++ DP G Y++ ++PEL+ P I++PW
Sbjct: 388 DVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPW 447
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQA 367
Q++ + DYP VN Q+
Sbjct: 448 LLSATEQKQWGVQLGVDYPRPCVNFHQS 475
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 171/458 (37%), Gaps = 123/458 (26%)
Query: 2 FPGTMH-----IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKREL-NFT 55
+ GT H G R RFLL+ + DL LK HG L + QG P + +L ++L + +
Sbjct: 44 YQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVS 103
Query: 56 KLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHV-----T 110
+ F ++ + + + C+ + + G ++D+ F H+
Sbjct: 104 TVAFHEEVASEEK-----SVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDV 158
Query: 111 FGTMSESLQREVSLFQTVPKPEQFHKYPE------------------MDFGDPLIRWLGG 152
+ ++++ + + + PEQ P +D GG
Sbjct: 159 YTQFRKAVEAQGRVRPVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGG 218
Query: 153 ETEALIKLNERL--SQEIESFKS------GVYLSNQVSPDLTGPPTSQSAALKFGCLSVR 204
ETEAL +L + + ++K GV S + SP L GC+S R
Sbjct: 219 ETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTKFSP-----------WLALGCISPR 267
Query: 205 RFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS---AHNPYYDQMEKNPICLNIP 261
Y + + + S + + +L+WR+YF ++ + +Y ++ ++P
Sbjct: 268 YIYEQIKKY--EVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDK---HVP 322
Query: 262 WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR-------------------------R 296
W + K +AWK G+TG PF+DA MR+L R
Sbjct: 323 WNTDM-----KMFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWR 377
Query: 297 L-------LDCTYCVCPVNFGRRL-------DP-----------------DGIYIKRYVP 325
L L + VC N+G L DP +G Y++++VP
Sbjct: 378 LGAEWFEYLLVDHDVCS-NYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNNGDYVRQWVP 436
Query: 326 ELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
ELR ++ PW A +++ YP I+
Sbjct: 437 ELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPIIT 474
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 82/242 (33%)
Query: 193 SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY-------TMSAHN 245
SA+L G LS R+ L +G P S + +LIWRE++ + H
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW--LNELIWREFYRHLMTWYPALCKHQ 297
Query: 246 PYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------R 296
P+ ++ + W H Y AW+ G+TGYP +DA MRQL R
Sbjct: 298 PFIRWTKR------VAWQENPH-----YFQAWQKGETGYPIVDAAMRQLNATGWMHNRLR 346
Query: 297 LLDCTYCV-----------------------------------------------CPVNF 309
++ ++ V P
Sbjct: 347 MITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 406
Query: 310 GRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASL 369
G R D DG +I++++P LR P + I+EPW+ EKA ++ DYP IV H QA +
Sbjct: 407 GERFDRDGEFIRQWLPALRDIPGKAIHEPWR----WAEKAGVVL--DYPRPIVEHKQARI 460
Query: 370 EN 371
Sbjct: 461 AT 462
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 119/300 (39%), Gaps = 80/300 (26%)
Query: 123 SLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS 182
+L + V PEQ YP +D P W +L + + ++ + +
Sbjct: 180 ALAELVWHPEQAFDYPRID-STP---WAADFETVRAQLRDFCRERVQDYHQA-----RDF 230
Query: 183 PDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMS 242
P G +S S L G LS R+ L+ H +++ E + ++ +LIWRE++ +
Sbjct: 231 PAREGT-SSLSPYLAIGVLSARQCVARLY-HESSMGELSEGAQVWLS-ELIWREFYQHLV 287
Query: 243 AHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295
A P + K+ + E + EK+ W G+TGYP +DA MRQL
Sbjct: 288 AIEP---NLSKSRDFVEWGARLEWWNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHN 343
Query: 296 ---------------------------RLLD------------CTYCVC----------P 306
RL+D C C P
Sbjct: 344 RLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNP 403
Query: 307 VNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQ 366
V+ G + DP+G +I+R+VPELR YI++PW P N ++ YP R+V+H Q
Sbjct: 404 VSQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYP-----AVNSVL---YPARLVDHKQ 455
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/436 (22%), Positives = 155/436 (35%), Gaps = 119/436 (27%)
Query: 11 NRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQ 70
N FL +CLA LD L+ GG+L + +G + +++ E ++ GV Y
Sbjct: 49 NPLAFLADCLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHI---AAGVSRYA 105
Query: 71 SFPTGSHPPRYQPCKTLLNFRD--LSGLPPR---PKEDIDFRHVTFGTMSESLQR----E 121
+ L+ D ++ L P P D F + +R
Sbjct: 106 ARREQRIREALADSGRELHVHDAVVTALAPGRVVPTGGKDH----FAVFTPYFRRWEAEG 161
Query: 122 VSLFQTVPKPEQFHKYPEMDFGDPL-----IRWL------GGETEALIKLNERLSQEIES 170
V QT P+ + P+ DPL + L GGE + L+ +
Sbjct: 162 VRGTQTAPRTV---RVPDGVASDPLPDRDCVENLSPGLARGGEEAGRKLVTSWLNGPMAD 218
Query: 171 FKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN-- 227
++ G DL G TS+ S L FG +S +H R
Sbjct: 219 YEDG-------HDDLAGDATSRLSPHLHFGTVSAAEL----------VHRAREKGGLGGE 261
Query: 228 -ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPF 286
QL WR++ + + A P + P + W ++ ++AWK+G TGYP
Sbjct: 262 AFVRQLAWRDFHHQVLADRPDASWSDYRP--RHDRWRSDA-----DEMHAWKSGLTGYPL 314
Query: 287 IDAVMRQL---------RRLLDCTY----------------------------------- 302
+DA MRQL R+L ++
Sbjct: 315 VDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWV 374
Query: 303 -----------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANC 351
+ PV G+R D G Y++ +VPEL + I+EPWK L ++A
Sbjct: 375 AGTGTDTRPNRVLNPVIQGKRFDARGDYVRGWVPELAEVEGSAIHEPWK--LQGLDRAGL 432
Query: 352 IISKDYPERIVNHVQA 367
DYP+ +V+ +A
Sbjct: 433 ----DYPDPVVDLAEA 444
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 72/269 (26%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALH 211
GE A+ +L + + +K+ N+ P +TG + S +K G +S R Y+ +
Sbjct: 210 GEEHAIKRLQMFTKKRLSGYKA-----NRDFPSITGT-SRLSPYIKTGAVSSRSIYYHIL 263
Query: 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKE 271
+ E S +L WR+++ + + P E + W SH +
Sbjct: 264 NA-----EADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNW---SHDQDD 315
Query: 272 KYLNAWKNGQTGYPFI---------DAVMRQLRRLLDCTYCV------------------ 304
L +WK G+TG+P + + M R++ ++
Sbjct: 316 --LTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERML 373
Query: 305 -----------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
PV +R D +G YI+ Y+PEL P YI
Sbjct: 374 IDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYI 433
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNH 364
+EPWK Q K C + +DYP IV+H
Sbjct: 434 HEPWKMSEEEQVKYKCRLDEDYPLPIVDH 462
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 85/263 (32%)
Query: 173 SGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRR-FYWALHDHFNTIHEGRPPSHFNITGQ 231
+G Y + P + G + SA+L G LS R+ + L + + G N +
Sbjct: 220 AGEYEQQRDFPAVEGT-SRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLN---E 275
Query: 232 LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP-------ESHPNKEKYLNAWKNGQTGY 284
LIWRE++ + ++P +C + P++ +S+P +L AW+ G+TGY
Sbjct: 276 LIWREFYRHLITYHP--------SLCKHRPFIAWTDRVQWQSNP---AHLQAWQEGKTGY 324
Query: 285 PFIDAVMRQLR---------RLLDCTYCV------------------------------- 304
P +DA MRQL R++ ++ V
Sbjct: 325 PIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQ 384
Query: 305 ----------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEK 348
P G + D +G +I++++PELR P + ++EPWK +K
Sbjct: 385 WAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QK 440
Query: 349 ANCIISKDYPERIVNHVQASLEN 371
A ++ DYP+ IV H +A ++
Sbjct: 441 AG--VTLDYPQPIVEHKEARVQT 461
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 91/237 (38%), Gaps = 75/237 (31%)
Query: 196 LKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQ---------LIWREYFYTMSAHNP 246
L FG +SVR+ + H I + + N G+ + REY +S ++P
Sbjct: 254 LHFGEVSVRKVF-----HLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 308
Query: 247 YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL------------ 294
Y + P+ ++ + P + E Y AW+ G+TGYP +DA MR+L
Sbjct: 309 Y---SHERPLLGHLKFFPWAV--DENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 363
Query: 295 ----------------------RRLLDCT---------YCVCPVNFGRRLD--------- 314
LLD Y + R D
Sbjct: 364 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEG 423
Query: 315 ----PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
P+G Y++R++PEL + P +I+ PW AP V + A + +YP IV +A
Sbjct: 424 YKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEA 480
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 103/458 (22%), Positives = 156/458 (34%), Gaps = 115/458 (25%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLK-----------REL 52
G G R +F LEC+ DL L++ G L + G + +L +
Sbjct: 54 GLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQT 113
Query: 53 NFTKLCFEQDCEGVKPYQSFPTG---SHPPRYQPCKTLLNFRDL-----SGLPPRPKEDI 104
T E D + + G S TL + D+ SGL P
Sbjct: 114 EVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFT 173
Query: 105 DFRH-----------VTFGTMSE--SLQREVSLFQTVPKPEQF---HKYPEMDFGD---- 144
FR+ + T +E + V F+ +PKP MD
Sbjct: 174 PFRNKVESKCKVRDVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKD 233
Query: 145 -----PLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFG 199
++ + GGE+ AL ++ L ES + Y + T + L G
Sbjct: 234 CLDERSVLDFKGGESNALARVKYYL---WESDRLATYFETRNGMLGGDYSTKLAPWLALG 290
Query: 200 CLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI--C 257
C+S R + + + E + S + + +LIWR++F ++ N I
Sbjct: 291 CVSPRHVVSEIRRYESERVENK--STYWVIFELIWRDFF-------KFFALKHGNKIFHL 341
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL----------------------- 294
S EK L AWK G TGYP IDA MR+L
Sbjct: 342 DGTAGRRASWKRDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAG 401
Query: 295 -----------RRLLD-------CTYCVCPVNFGRRL------------DPDGIYIKRYV 324
LLD +C G R+ DP G YIK +V
Sbjct: 402 IDWRHGADWFEHHLLDYDTASNWGNWCAAAGMTGGRINRFNIAKQTKDYDPAGEYIKTWV 461
Query: 325 PELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
EL + P YI +P +AP ++++ I +YP ++
Sbjct: 462 KELAEVPAAYIADPNQAPRELRDR----IGLNYPNKLA 495
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 36/305 (11%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R +L CL +L ++ + G +L ++QG P + +L ++L + + QD E PY
Sbjct: 51 RVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIE---PYGR 107
Query: 72 FPTG--SHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE------VS 123
G + + + + + L P + + +G ++ Q + +
Sbjct: 108 DRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVAT 167
Query: 124 LFQTVP-KPEQFHKYPEMDFGD-PLIRWLG-----------GETEALIKLNERLSQEIES 170
+ V PEQ + + P ++ LG GET A+ +L E + I
Sbjct: 168 PTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIAD 227
Query: 171 FKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITG 230
+ + P ALKFG + +R+ + A + +
Sbjct: 228 YDPQRNFPAEAGTSGLSP------ALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQ 281
Query: 231 Q-LIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
Q L WRE++ H P + PW N+E AW QTGYP +DA
Sbjct: 282 QELAWREFYQHALYHFPSLADGPYRSLWQQFPW-----ENREALFTAWTQAQTGYPIVDA 336
Query: 290 VMRQL 294
MRQL
Sbjct: 337 AMRQL 341
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 306 PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHV 365
P + ++ D YIKR++PELR + + P+G + YP IVNH
Sbjct: 408 PASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIG---------RRGYPAPIVNH- 457
Query: 366 QASLENKQY 374
+L KQ+
Sbjct: 458 --NLRQKQF 464
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 118/314 (37%), Gaps = 51/314 (16%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G +G +RF FL + L L +L+ G +L ++ G+ I +L E + Q
Sbjct: 60 GIPAMGKHRFTFLQQSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQH- 118
Query: 64 EGVKPYQSFPTGSHPPRY-------QPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE 116
+G Y+ G R+ P TL + ++L P D+ F E
Sbjct: 119 QGY--YERLQLGLLQQRFPFLPFHETPNNTLFSEQEL----PFELADLPETFSQFRKKVE 172
Query: 117 SLQREVSL--FQTVP-----------KPEQFHKYPEMDFGDPLIRWLGGETEALIKLNER 163
L R S+ +P K E ++ DF GGE AL L
Sbjct: 173 PLSRNFSVQPVNALPSLPKNISYPGFKAETLNELASDDFE-------GGERAALTHLTSY 225
Query: 164 LSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPP 223
S E +G Y + + D T S L GCLSVR+ AL + G
Sbjct: 226 FSGE----SAGTYKQTRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAYETEF--GENE 279
Query: 224 SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY---LNAWKNG 280
S + I+ +L+WREYF+ + ++ L P Y W +G
Sbjct: 280 SSYWISFELLWREYFFWYA--------LKHGKRLFAFSGLSGKSPKTSFYSERFQKWCSG 331
Query: 281 QTGYPFIDAVMRQL 294
T YP ++A M+QL
Sbjct: 332 NTPYPIVNACMKQL 345
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 160/452 (35%), Gaps = 124/452 (27%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKL 57
G G +R F + +ADL L+ GG L + G P ++ +L + TK
Sbjct: 47 GPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKP 106
Query: 58 CFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSE- 116
E+ + R + TL + DL P P DID + +E
Sbjct: 107 ATEERRRAADVASALDDAGIALRQRWTHTLYHPDDL----PTPPTDIDDTFTPWRKETEA 162
Query: 117 --SLQREVSLFQTVPKPEQFHKYP-----EMDFGDP------LIRWLGGET------EAL 157
+++ S +TVP P+ P + +P ++ + GGE+ E+
Sbjct: 163 AATVRDPRSAPETVPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESY 222
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI 217
I + L +E ++ ++G+ ++ S S L GCLS R W LH
Sbjct: 223 IWEGDHL-REYKTTRNGLLGADYSS--------KFSPWLAAGCLSPR---W-LHREVERY 269
Query: 218 HEGRPPSH--FNITGQLIWREYFYTMSAHNPYYDQMEKNPICL---------NIPWLPES 266
+ R + + + +L WR++F Q EK NI W
Sbjct: 270 EDERVANEDTYWLVFELAWRDFFQF---------QFEKYGATFFKPGGIRERNIDW---- 316
Query: 267 HPNKEKYL-NAWKNGQTGYPFIDAVMRQLRR------------------LLDCTYCVCPV 307
++++ L W +G+TG PF+DA MR+L R +L +
Sbjct: 317 --DRDRALFERWADGETGVPFVDANMRELNRTGYMSNRGRQNVASFLAGVLGIDWRWGAA 374
Query: 308 NFGRRL------------------------------------DPDGIYIKRYVPELRQFP 331
F RL D D YI ++PEL P
Sbjct: 375 YFEARLIDYDVASNWGNWAYQAGVGNDSRDRYFDVRSQAERYDSDAEYITTWLPELAALP 434
Query: 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVN 363
++PW+ Q + + DYPE +V+
Sbjct: 435 ATIAHQPWQLSEAEQREYGVELGVDYPEPVVD 466
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 124/310 (40%), Gaps = 28/310 (9%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
G G R RFL+E L DL +L+S GG+L + G P ++ Q L L + F +
Sbjct: 46 GFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEP 105
Query: 64 EGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVS 123
+ + + T + + D P +I F + ++++
Sbjct: 106 R-TEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCE 164
Query: 124 LFQTVPKPEQFHKY--PEMDFGD-PLIRWLGGETEALIK--LNE------RLSQEIESF- 171
+ +P + H E++ GD P + LG T L LN+ Q +E +
Sbjct: 165 ARSPLEEPIRIHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYI 224
Query: 172 --KSGVYLSNQVSPDLTGPPTSQ--SAALKFGCLSVRRFYWALHDHFNTIHEGR--PPSH 225
+ + + + + P S S L GCLS R + DH E R S
Sbjct: 225 WNEDRLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPR----MIADHVRRYEEERVKNKST 280
Query: 226 FNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYP 285
+ + +L+WR+YF +S + +N+ W + + W++G TGYP
Sbjct: 281 YWMIFELLWRDYFRWISRKHGATLFRAGGLRGVNVDW-----KSDRELFRRWQDGTTGYP 335
Query: 286 FIDAVMRQLR 295
+DA MR+LR
Sbjct: 336 LVDANMRELR 345
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 311 RRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLE 370
R D G Y K ++PELR + I+EPWK Q++ + K+YP IV+ ++ E
Sbjct: 416 RDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLFDSAKE 475
Query: 371 NKQYLKKEKA 380
N+ + KA
Sbjct: 476 NETIYMRAKA 485
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 108/288 (37%), Gaps = 87/288 (30%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYW 208
W GE EAL +L + + I G Y + P + G ++ S G LS R
Sbjct: 357 WPAGEHEALKRLEKFCDEAI-----GKYAERRNIPAMQGT-SNLSVHFASGTLSARTAIR 410
Query: 209 ALHDHFNT--IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
D NT ++ G I+ ++ WR+++ + H PY +C+N P+ P +
Sbjct: 411 TARDRNNTKKLNGGNEGIQRWIS-EVAWRDFYKHVLVHWPY--------VCMNKPFKP-T 460
Query: 267 HPNKE-----KYLNAWKNGQTGYPFIDAVMRQ---------------------------- 293
+ N E + +AW G+TG+P IDA MRQ
Sbjct: 461 YSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWR 520
Query: 294 ------LRRLLDCTYCVCPVNFG----------------------RRLDPDGIYIKRYVP 325
+ L+D + +G + DPDG YI+++V
Sbjct: 521 MGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVE 580
Query: 326 ELRQFP------IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
ELR P I++P+ G ++ + K YP IV H A
Sbjct: 581 ELRDLPELKGGKGGEIHDPYGR--GSEKVKKKLEEKGYPRPIVEHSGA 626
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 66/252 (26%)
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
F C +++ WA + EG + + G + REY + + P+ +
Sbjct: 262 FQCARMKQIIWARDKN----SEGEESADLFLRGIGL-REYSRYICFNFPFTHEQSLLSHL 316
Query: 258 LNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV---- 304
PW + +K+ AW+ G+TGYP +DA MR+L R++ ++ V
Sbjct: 317 RFFPW----DADVDKF-KAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLL 371
Query: 305 CPVNFGRR-------------------------------------------LDPDGIYIK 321
P +G + DP+G YI+
Sbjct: 372 LPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIR 431
Query: 322 RYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381
+++PEL + P ++I+ PW APL V + + + +Y + IV+ A + + + +
Sbjct: 432 QWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAISRTREA 491
Query: 382 CIINKDYPERIV 393
I+ P+ IV
Sbjct: 492 QIMIGAAPDEIV 503
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 72/196 (36%)
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESH-PNKEKYLNAWKNGQTGYPFIDA 289
Q++WRE++Y + P + E + W E H N K+ NAWK G TG+P IDA
Sbjct: 278 QILWREFYYHLLIGFPKISRSESL-----VTWEKEIHWINNIKHFNAWKEGNTGFPIIDA 332
Query: 290 VMRQLR---------RLLDCTYCV------------------------------------ 304
MRQL R++ ++ V
Sbjct: 333 GMRQLNELGWMHNRLRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGGWQWSASV 392
Query: 305 -C----------PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP--WKAPLGVQEKANC 351
C P++ + D G +IK+++PEL+ P +I++P W ++ N
Sbjct: 393 GCDSVPYIRIFNPLHQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEW------SKQKNF 446
Query: 352 IISKDYPERIVNHVQA 367
I DYP I+N+ ++
Sbjct: 447 KI--DYPNPIINYSES 460
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 133/352 (37%), Gaps = 61/352 (17%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF-TKLCFE 60
FP T G R FL+ECL DL + L G L I G P I L ++ T +
Sbjct: 131 FPKT---GALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHK 187
Query: 61 QDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLS---GLPPRPKEDIDFRHV----TFGT 113
+ C + Q K + N L G K+D+ F +
Sbjct: 188 ETCSEEVDVERLVN-------QGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQ 240
Query: 114 MSESLQREVSLFQTVPKPEQFHKYPEMD-FGDP---------------LIRWLGGETEAL 157
+S++ + S+ + P P +D +GD +R++GGE+ +
Sbjct: 241 FRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGV 300
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGP--PTSQSAALKFGCLSVRRFYWALHDHFN 215
++ E + K + + + + GP T S L FGC+S R Y +
Sbjct: 301 GRVFEYFWK-----KDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIY----EEVQ 351
Query: 216 TIHEGRPP--SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
+ R S + + +LIWR+YF +S P + W +K
Sbjct: 352 RYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKW-----SQDQKL 406
Query: 274 LNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCVCPVNFGRRLDPD 316
+W++ +TGYP IDA M++L R + C++ V + R+ +
Sbjct: 407 FESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAE 458
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 69/338 (20%)
Query: 2 FPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELN-FTKLCFE 60
FP T G R +FL+ECL DL R L G L I G P I + + + T +
Sbjct: 132 FPKT---GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHK 188
Query: 61 QDC--------------EGVKPYQSFPTGSHPPRYQPCK-----TLLNFRDLS-GLPPRP 100
+ C E V Q + PR + TL + DL + P
Sbjct: 189 ETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLP 248
Query: 101 KEDIDFRHVTFGTMS---------------ESLQREVSLFQTVPKPEQFHKYPEMDFGDP 145
FR S S E+ + TVP E M +
Sbjct: 249 DVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGL--SMTKAEK 306
Query: 146 LIRWLGGETEALIKLNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALK 197
+ ++GGE+ AL +++E ++ +E + G S + SP L S S + +
Sbjct: 307 GMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLA----SGSLSPR 362
Query: 198 FGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPIC 257
+ C V+R+ S + + +LIWR+YF +SA + +
Sbjct: 363 YICEEVKRY---------EKQRIANDSTYWVLFELIWRDYFRFISA------KYGNSIFH 407
Query: 258 LNIPWLPESHPNKEKYL-NAWKNGQTGYPFIDAVMRQL 294
L P ES ++++ L +W++G+TGYP IDA M++L
Sbjct: 408 LGGPRNVESKWSQDQALFESWRDGRTGYPLIDANMKEL 445
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 110/280 (39%), Gaps = 83/280 (29%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W G + A LNE + +++ + S + G TS S L FG +SVRR +
Sbjct: 209 WSPGWSNADKILNEFIEKQLIDYAKN-------SKKVVGNSTSLLSPYLHFGEISVRRVF 261
Query: 208 ---------WALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICL 258
WA + EG + + G + R+Y + + P+ +
Sbjct: 262 QCARMKQIIWARDKN----GEGEESADLFLRGIGL-RDYSRIICFNFPFTHEQSLLSHLR 316
Query: 259 NIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV----C 305
PW + +K+ AW+ G+TGYP +DA MR+L R++ ++ V
Sbjct: 317 FFPW----DADVDKF-KAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLL 371
Query: 306 PVNFGR---------------------------------RLD----------PDGIYIKR 322
P +G RLD P+G YI++
Sbjct: 372 PWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDPEGEYIRQ 431
Query: 323 YVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIV 362
++PEL + P ++I+ PW APL V + + + +Y + IV
Sbjct: 432 WLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIV 471
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 90/242 (37%), Gaps = 79/242 (32%)
Query: 189 PTSQ-SAALKFGCLSVRRFYWALH---DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAH 244
PTS+ S LKFG + +R Y A +T E + F GQL WRE++ A
Sbjct: 239 PTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAF--IGQLAWREFY----AQ 292
Query: 245 NPYYDQMEKNPICLNIPWLPESHP----NKEKYLNAWKNGQTGYPFID---------AVM 291
Y++Q N + N HP + L AWK+G+TGYP +D A M
Sbjct: 293 VLYFNQ---NVVSENFK--AYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYM 347
Query: 292 RQLRRLLDCTYCV----------------------------------------------- 304
R++ +
Sbjct: 348 HNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVF 407
Query: 305 CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNH 364
P+ G R DPD YI +VPELR P I+ W L + E+ + +YP+ IV+H
Sbjct: 408 NPMTQGERYDPDADYITEFVPELRDVPADAIHS-WH-ELSLSERRRH--APEYPDPIVDH 463
Query: 365 VQ 366
Q
Sbjct: 464 SQ 465
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGV 66
H R F+L+ LA L + + G L + G P ++ + +L+ T++ + D G+
Sbjct: 50 HAAPPRVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGL 109
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 127/338 (37%), Gaps = 73/338 (21%)
Query: 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKR------------- 50
G G R +F++ECL DL R L G L I G P I L +
Sbjct: 124 GMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKET 183
Query: 51 ---ELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCK-------TLLNFRDLSGLPPRP 100
E+ K+ + V P S G+ P K T+ + DL P
Sbjct: 184 CSEEVKVEKMVTRNLQKLVSP-SSGGIGNDPGSGNTTKLELVWGSTMYHIDDL----PFD 238
Query: 101 KEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEM-DFG---------------D 144
E + + F +S++ + + P F PE+ D+G
Sbjct: 239 CESLPDVYTQF---RKSVEYKSKVRNCTKLPTSFGPPPEVGDWGHVPQVSELGLQQEKVS 295
Query: 145 PLIRWLGGETEALIKLNE--------RLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAAL 196
+ ++GGE+ AL ++++ ++ +E + G S + SP L S S +
Sbjct: 296 KGMNFVGGESAALGRVHDYFWKKDLLKVYKETRNGMLGADYSTKFSPWLA----SGSLSP 351
Query: 197 KFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPI 256
+F V+R+ S + + +LIWR+YF +S P
Sbjct: 352 RFIYEEVKRY---------EKERLSNDSTYWVLFELIWRDYFRFLSIKLANLLFQAGGPQ 402
Query: 257 CLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
+NI W + +AW+ GQTGYP IDA M++L
Sbjct: 403 KVNINW-----SQDQTMFDAWRRGQTGYPLIDANMKEL 435
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 153/453 (33%), Gaps = 126/453 (27%)
Query: 12 RFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQS 71
R +LL CL L + G +L + Q P+ + KL L + + D +PY
Sbjct: 65 RVAYLLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLD---TEPYAQ 121
Query: 72 FPTGSHPPRYQPCKTLLNFRDLS------GLPPRPKEDIDFRHVTFGTMSESLQREVSLF 125
R L R L+ L P E + + + + L
Sbjct: 122 -------KRDLAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLP 174
Query: 126 QTVPKP-----------EQFHKYPEMDFGDPLIRWLG-----------GETEALIKLNER 163
+T P P E+ P P + LG GE A +L+
Sbjct: 175 KTSPVPTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWF 234
Query: 164 LSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRP 222
++ +E ++ N+ P L G TSQ SAALKFG +S R + + +
Sbjct: 235 VAHGLEEYQQ-----NRNFPALDG--TSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEA 287
Query: 223 PSHFNITGQ-LIWREYF------YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
+ Q L WRE++ + A PY ++ PW + +
Sbjct: 288 RASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQE------FPW-----EENQDHFQ 336
Query: 276 AWKNGQTGYPFIDAVMRQLR---------RLLDCTYCV---------------------- 304
AW G+TGYP IDA M QL R++ ++ +
Sbjct: 337 AWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGD 396
Query: 305 ------------------------CPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWK 340
P ++ DP+G YI+ ++P+L +F +
Sbjct: 397 LAANNGGWQWSASSGMDPKPLRIFNPHTQAQKFDPEGEYIRTWLPQLARFDTGDLLTGKL 456
Query: 341 APLGVQEKANCIISKDYPERIVNHVQASLENKQ 373
P G + N YPE IV+H Q E K+
Sbjct: 457 TP-GSRRSVN------YPEPIVDHNQQQREFKR 482
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 31/300 (10%)
Query: 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG--- 65
G + RFL + LADLD L + G +L++ P + L ++ T + +
Sbjct: 55 GEAKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDER 114
Query: 66 ---VKPYQSFPTGSHPPRYQPCKTLLNFRDLS-GLPPRPKEDIDFRHVTFGTMSESLQRE 121
+ +Q F S Q +LL+ L L P FR + SL
Sbjct: 115 QAIARIHQDF--SSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRK---QVETISLSAP 169
Query: 122 VSLFQTVPKPEQFHKYPEMDF-GDP-LIRWLGGETEALIKLNERLSQEIESFKSGVYLSN 179
+ +P EQ + P MD +P ++GGE L S + S Y
Sbjct: 170 MGYPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPS----RYKET 225
Query: 180 QVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFY 239
+ D T S L G +S + Y A+ + +H G S + I +L+WREYFY
Sbjct: 226 RNGLDGMDYSTKFSPWLALGAVSPKTIY-AMLQRYEAVH-GANDSTYWIFFELLWREYFY 283
Query: 240 TMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN---AWKNGQTGYPFIDAVMRQLRR 296
+Y + + + E P Y WK+G+T +P ++A MRQL +
Sbjct: 284 -------WYARRYGAKL-FRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQLNQ 335
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 119 QREVSLFQTVPKPEQ--FHKYPEMDFGDPLIR-WLGGETEALIKLNERLSQEIESFKSGV 175
Q ++++ PKP+ H + +DF P+ +L + + E + E F
Sbjct: 163 QLQLNIPSCFPKPQNKNLHDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIK- 221
Query: 176 YLSNQVSPDL----TGPPTSQSAALKFGCLSVRRFYWALHDHF-NTIHEGRPPSHFNITG 230
Y N+ + D + SA L G +S R+ L + + IH+ N
Sbjct: 222 YAFNKYNFDQEIFELNSTSMLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEECKWIN--- 278
Query: 231 QLIWREYFYTMSAHNPYYDQMEKNPICLN-IPWLPESHPNKEKYLNAWKNGQTGYPFIDA 289
+L+WRE++ + P Q + N I W N YLN WK G TGYP IDA
Sbjct: 279 ELLWREFYQHLLYFYPNIGQNQSLYHWENRIKW-----DNNLYYLNLWKQGNTGYPIIDA 333
Query: 290 VMRQLRRL 297
MRQL++L
Sbjct: 334 GMRQLKQL 341
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 105/300 (35%), Gaps = 42/300 (14%)
Query: 3 PGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQD 62
P + R + LE + L ++ GG L++++G P + R L
Sbjct: 37 PNNLKTTPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLK--------- 87
Query: 63 CEGVKPYQSF-PTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQRE 121
+ V S+ P G RY+ K L P P + + +R
Sbjct: 88 AKAVYALTSYTPYG----RYRDAKVQEALPVPLHLLPAPHLLPPDLPRAYRVYTPFARRF 143
Query: 122 VSLFQTVPKPEQFHKYPEM------DFGDPLIRWLGGETEALIKLNERLSQEIESFKSGV 175
+ + +P PE K PE D G PL GE AL L L ++ +
Sbjct: 144 LGVEAPLPAPEALPKGPEEGEIPREDPGLPLPE--PGEEAALAGLRAFLEAKLPRYA--- 198
Query: 176 YLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIW 234
+ L G S+ S G LS R W +L+W
Sbjct: 199 ----EERDRLDGEGGSRLSPYFALGVLSPRLAAWEAERRGGE-------GARKWVAELLW 247
Query: 235 REYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
R++ Y + H P+ + +P +PW E AW G+TG P +DA MR+L
Sbjct: 248 RDFSYHLLYHFPWMAERPLDPRFQALPWQ-----EDEALFRAWYEGRTGVPLVDAAMREL 302
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 229 TGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288
+L+WR++ Y + H P+ + +P PW E AW G+TG P +D
Sbjct: 242 VAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPW-----QEDEALFQAWYEGKTGVPLVD 296
Query: 289 AVMRQL 294
A MR+L
Sbjct: 297 AAMREL 302
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/428 (20%), Positives = 147/428 (34%), Gaps = 114/428 (26%)
Query: 1 MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKL------------ 48
M G H +RF+ + L ++R L G++ IV + F ++
Sbjct: 40 MLLGDAHYSERHWRFVWQSLQAINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSH 99
Query: 49 ---------KRELNFTKLCFEQDCEGVK-PYQSFPTGSHPPRYQPCKTLLNFRD-LSGLP 97
+R+L + C + D + PY + G+ +T N+ + +
Sbjct: 100 QEVGLACTFQRDLALAQWCQQHDIVWHEFPYAAVIRGA--------QTRKNWDEHWQQVM 151
Query: 98 PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEAL 157
P D D + + + + L +P Q K M G + W E
Sbjct: 152 RSPCCDPDLTRANWLKLDAA---TLGLRSDIPATWQ-SKQAGMQTGGSDMAWATLE---- 203
Query: 158 IKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWALHDHFNT 216
+ + + Y + SP L S+ S L +G +S+R Y L H++
Sbjct: 204 ---------DFFARRGREYYRSISSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSV 254
Query: 217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW---LPESHPNKEKY 273
G S ++ +L W +F + + E C+N + L +S
Sbjct: 255 --AGFRRSLIALSSRLHWHCHFI-----QKFESECEMEFRCVNRAYDSLLQQSSDAPAAQ 307
Query: 274 LNAWKNGQTGYPFIDAVMR----------QLRRLL--------------DCTYC------ 303
L AW+ G TG P +DA MR ++R +L TY
Sbjct: 308 LAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLD 367
Query: 304 ---------------VCPVNFGRRLDP---------DGIYIKRYVPELRQFPIQYIYEPW 339
V N R +P +G +I ++VPEL Q P+ ++EPW
Sbjct: 368 FEPGIHYPQFQMQAGVTGTNTIRIYNPTKQAQEHDSEGQFIHKWVPELAQVPVPLLFEPW 427
Query: 340 -KAPLGVQ 346
PL Q
Sbjct: 428 LMTPLEAQ 435
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 12/199 (6%)
Query: 96 LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETE 155
LP P+ FR G S +PK Q F + + + GGE
Sbjct: 147 LPDLPETFTQFRKCVEGIDIAHPIDAPSRLPPMPKGAQLPTLSSFYFDESAL-FSGGEWS 205
Query: 156 ALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFN 215
L + S Y + D T S L GC+S R + L +
Sbjct: 206 GLAHCRRYFFSGLAS----SYKETRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQ 261
Query: 216 TIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLN 275
T +G S + I +L+WREYFY + Y ++ + N P L + ++
Sbjct: 262 T--QGANDSTYWIYFELLWREYFYWYA--RCYQQRLFRFGGIRNQPPLTSFYAHR---FQ 314
Query: 276 AWKNGQTGYPFIDAVMRQL 294
WKNG T YP ++A M QL
Sbjct: 315 QWKNGTTPYPIVNACMHQL 333
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCE 64
+ R +LL CL L + GG L +VQG P + ++ L T + + +D E
Sbjct: 48 VAAVRVAYLLGCLQALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVE 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,816,402
Number of Sequences: 539616
Number of extensions: 7828263
Number of successful extensions: 15078
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14844
Number of HSP's gapped (non-prelim): 156
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)