Query psy6304
Match_columns 407
No_of_seqs 157 out of 1511
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:59:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 5.4E-83 1.9E-87 659.7 33.4 381 4-405 54-524 (537)
2 3tvs_A Cryptochrome-1; circadi 100.0 7.1E-82 2.4E-86 652.6 27.0 369 4-382 47-515 (538)
3 2wq7_A RE11660P; lyase-DNA com 100.0 5.8E-80 2E-84 641.3 28.5 376 6-401 77-542 (543)
4 1np7_A DNA photolyase; protein 100.0 2.1E-78 7.2E-83 623.6 29.4 349 4-377 51-485 (489)
5 1u3d_A Cryptochrome 1 apoprote 100.0 9.1E-78 3.1E-82 621.4 29.6 350 8-386 55-499 (509)
6 1owl_A Photolyase, deoxyribodi 100.0 4E-76 1.4E-80 605.3 28.8 343 5-382 44-475 (484)
7 1dnp_A DNA photolyase; DNA rep 100.0 2.8E-76 9.6E-81 603.9 26.4 335 6-380 44-469 (471)
8 2e0i_A 432AA long hypothetical 100.0 2.2E-73 7.6E-78 576.8 21.7 307 8-381 46-431 (440)
9 2j4d_A Cryptochrome 3, cryptoc 100.0 7.2E-73 2.5E-77 585.9 25.1 346 4-380 86-519 (525)
10 2j07_A Deoxyribodipyrimidine p 100.0 9.8E-70 3.4E-74 548.4 30.5 300 9-380 43-419 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 6.2E-55 2.1E-59 447.9 9.7 303 5-336 82-495 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 2.1E-53 7.1E-58 437.1 16.9 295 5-325 79-481 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 1.3E-39 4.4E-44 330.6 13.1 340 5-381 54-493 (522)
14 1tq8_A Hypothetical protein RV 69.2 10 0.00035 31.5 6.5 45 17-61 80-127 (163)
15 1mjh_A Protein (ATP-binding do 66.8 13 0.00043 30.4 6.6 46 16-61 81-128 (162)
16 3fdx_A Putative filament prote 64.9 14 0.00047 29.3 6.3 48 15-62 63-115 (143)
17 3hgm_A Universal stress protei 62.3 18 0.00061 28.7 6.6 48 14-61 66-118 (147)
18 3s3t_A Nucleotide-binding prot 61.1 20 0.00067 28.5 6.6 47 15-61 66-116 (146)
19 3fvv_A Uncharacterized protein 58.4 13 0.00045 32.1 5.4 45 17-61 94-138 (232)
20 3fg9_A Protein of universal st 57.9 20 0.00068 29.0 6.2 47 15-61 76-127 (156)
21 2dum_A Hypothetical protein PH 56.9 19 0.00064 29.6 5.9 47 16-62 76-126 (170)
22 2gm3_A Unknown protein; AT3G01 56.7 25 0.00085 29.1 6.7 46 17-62 86-133 (175)
23 3dlo_A Universal stress protei 56.6 29 0.001 28.3 7.0 48 14-61 74-125 (155)
24 2gvs_A Chemosensory protein CS 56.1 3.3 0.00011 32.8 0.8 21 311-331 88-108 (109)
25 3tnj_A Universal stress protei 54.1 40 0.0014 26.7 7.4 44 18-61 71-117 (150)
26 3idf_A USP-like protein; unive 51.1 31 0.0011 26.9 6.2 45 15-61 63-109 (138)
27 1jmv_A USPA, universal stress 49.9 35 0.0012 26.8 6.3 42 21-62 67-111 (141)
28 3mn1_A Probable YRBI family ph 41.3 23 0.00079 30.0 4.1 37 23-59 54-90 (189)
29 2z08_A Universal stress protei 37.6 70 0.0024 24.9 6.2 33 30-62 73-108 (137)
30 3mmz_A Putative HAD family hyd 37.4 34 0.0012 28.6 4.4 32 24-55 48-79 (176)
31 3ij5_A 3-deoxy-D-manno-octulos 37.4 28 0.00097 30.4 4.0 37 23-59 84-120 (211)
32 3loq_A Universal stress protei 37.4 63 0.0022 29.1 6.7 44 18-61 214-259 (294)
33 3e8m_A Acylneuraminate cytidyl 36.3 33 0.0011 27.9 4.1 35 25-59 41-75 (164)
34 1k1e_A Deoxy-D-mannose-octulos 36.3 36 0.0012 28.4 4.4 34 25-58 45-78 (180)
35 3n07_A 3-deoxy-D-manno-octulos 35.6 32 0.0011 29.6 4.0 35 25-59 62-96 (195)
36 3twe_A Alpha4H; unknown functi 35.0 28 0.00094 19.3 2.1 16 15-30 5-20 (27)
37 3n1u_A Hydrolase, HAD superfam 33.7 38 0.0013 28.8 4.2 35 25-59 56-90 (191)
38 3mt0_A Uncharacterized protein 33.1 84 0.0029 28.2 6.8 44 18-61 199-245 (290)
39 1q77_A Hypothetical protein AQ 32.7 48 0.0016 25.8 4.4 42 18-60 72-116 (138)
40 3gkn_A Bacterioferritin comigr 31.1 86 0.0029 25.1 5.9 39 17-55 55-93 (163)
41 2p9j_A Hypothetical protein AQ 30.2 79 0.0027 25.4 5.5 34 25-58 46-79 (162)
42 2r8e_A 3-deoxy-D-manno-octulos 30.0 44 0.0015 28.1 3.9 34 25-58 63-96 (188)
43 4gxt_A A conserved functionall 29.1 34 0.0012 33.1 3.4 45 17-61 223-273 (385)
44 3olq_A Universal stress protei 29.0 1.2E+02 0.0041 27.4 7.1 47 15-61 225-274 (319)
45 1k19_A Chemosensory protein CS 27.7 12 0.0004 29.8 -0.2 19 311-329 86-104 (112)
46 4eze_A Haloacid dehalogenase-l 26.8 77 0.0026 29.4 5.3 43 19-61 183-225 (317)
47 3ixr_A Bacterioferritin comigr 26.4 90 0.0031 25.9 5.3 39 17-55 71-109 (179)
48 3q8k_A Flap endonuclease 1; he 25.6 65 0.0022 30.5 4.6 46 17-63 134-179 (341)
49 1ul1_X Flap endonuclease-1; pr 25.6 60 0.0021 31.2 4.4 44 19-63 136-179 (379)
50 4fe3_A Cytosolic 5'-nucleotida 24.6 85 0.0029 28.4 5.1 37 19-55 145-181 (297)
51 1a76_A Flap endonuclease-1 pro 24.4 63 0.0021 30.3 4.2 44 19-63 131-174 (326)
52 2do5_A Splicing factor 3B subu 24.2 26 0.0009 23.3 1.0 25 21-48 14-38 (58)
53 1b43_A Protein (FEN-1); nuclea 23.8 77 0.0026 29.8 4.8 46 17-63 129-174 (340)
54 1exn_A 5'-exonuclease, 5'-nucl 23.2 97 0.0033 28.7 5.1 50 14-63 97-153 (290)
55 3ory_A Flap endonuclease 1; hy 22.6 70 0.0024 30.6 4.2 43 20-63 146-188 (363)
56 3skx_A Copper-exporting P-type 22.4 1.2E+02 0.0042 26.3 5.7 39 20-58 149-187 (280)
57 3j08_A COPA, copper-exporting 21.7 67 0.0023 33.2 4.1 40 22-61 464-503 (645)
58 3m1y_A Phosphoserine phosphata 21.7 1.2E+02 0.0041 25.1 5.3 40 20-59 80-119 (217)
59 2izo_A FEN1, flap structure-sp 21.6 76 0.0026 30.0 4.2 45 18-63 127-171 (346)
60 3p96_A Phosphoserine phosphata 21.2 1.1E+02 0.0036 29.4 5.3 43 19-61 260-302 (415)
61 3n28_A Phosphoserine phosphata 20.9 1.4E+02 0.0047 27.5 5.9 43 19-61 182-224 (335)
62 3kd3_A Phosphoserine phosphohy 20.8 1.4E+02 0.0047 24.5 5.4 41 19-59 86-128 (219)
63 1tp9_A Peroxiredoxin, PRX D (t 20.7 1.3E+02 0.0046 24.2 5.2 38 17-54 56-94 (162)
64 3l8h_A Putative haloacid dehal 20.2 1.5E+02 0.0052 23.9 5.5 43 18-60 30-89 (179)
65 3a1c_A Probable copper-exporti 20.2 1.3E+02 0.0043 27.0 5.3 37 22-58 170-206 (287)
66 2pr7_A Haloacid dehalogenase/e 20.2 51 0.0017 25.3 2.3 39 16-54 19-57 (137)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-83 Score=659.65 Aligned_cols=381 Identities=34% Similarity=0.617 Sum_probs=311.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------e
Q psy6304 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------V 66 (407)
Q Consensus 4 ~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v 66 (407)
|++++|++|++||++||.+|+++|+++|++|+|+.|+|.++|++|+++++|++|++|++|++ |
T Consensus 54 g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI 133 (537)
T 3fy4_A 54 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGV 133 (537)
T ss_dssp BCSSCBHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999999999999999999999999999999999999999987 5
Q ss_pred eeEE-----------ecC--CCCCCCccCcchhHHHHhhhcCCCCCCC-CCCcccccccCCcchhHHhhhhccCCCCCCc
Q psy6304 67 KPYQ-----------SFP--TGSHPPRYQPCKTLLNFRDLSGLPPRPK-EDIDFRHVTFGTMSESLQREVSLFQTVPKPE 132 (407)
Q Consensus 67 ~~~~-----------i~~--~g~~~~~ftp~~~f~~~~~~~~~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 132 (407)
.+++ |.+ ++++|.||| +|++.+.+...+..|. +.|.. +...+... ..... .+|+++
T Consensus 134 ~~~~~~~~~L~~p~~v~~~~~~~~y~vft---pf~k~~~~~~~~~~p~~~~p~~--~~~~~~~~----~~~~~-~~p~l~ 203 (537)
T 3fy4_A 134 EVFSPVSHTLFNPAHIIEKNGGKPPLSYQ---SFLKVAGEPSCAKSELVMSYSS--LPPIGDIG----NLGIS-EVPSLE 203 (537)
T ss_dssp EEECCCCSSSSCHHHHHHHTSSSCCSSHH---HHHHHHCCCTTTTCCCCCCCSC--CCCCCCCC----SSCCC-CCCCTT
T ss_pred eEEEecCCEEEchhhcccCCCCCCCCccC---HHHHHHHhhcCCcCCCCCcccc--CCCccccc----ccccc-cCCcHH
Confidence 5554 222 466999999 8888886653212221 11110 11100000 00111 456777
Q ss_pred cCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCC-CCCCCCcCCcccccCcccHHHHHHHHH
Q psy6304 133 QFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPD-LTGPPTSQSAALKFGCLSVRRFYWALH 211 (407)
Q Consensus 133 ~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~-~~~~tS~LSPyL~~G~IS~R~v~~~~~ 211 (407)
++++...... ....|+|||.+|+++|++|+ ..+.++.+|.+.++.+.. ..++||+|||||+|||||||+|++++.
T Consensus 204 ~l~~~~~~~~--~~~~~~~Ge~~A~~~L~~Fl--~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~ 279 (537)
T 3fy4_A 204 ELGYKDDEQA--DWTPFRGGESEALKRLTKSI--SDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ 279 (537)
T ss_dssp TTTCCGGGSS--CCCSCCCSHHHHHHHHHHHT--CCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHH
T ss_pred hcCCCccccc--ccCCCCccHHHHHHHHHHHH--hCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHH
Confidence 7776432100 11358999999999999999 542358899988876643 136999999999999999999999998
Q ss_pred HhhcccCCCCCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhh
Q psy6304 212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291 (407)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaM 291 (407)
+....... ...+.++|++||+|||||+++++++|++...++++.+..++|+. |++.|++|++|+||||||||||
T Consensus 280 ~~~~~~~~-~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~-----~~~~~~aW~~G~TG~P~vDA~M 353 (537)
T 3fy4_A 280 NIYKDVKK-HTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNE-----DHAMLAAWRDGKTGYPWIDAIM 353 (537)
T ss_dssp HHHHTTSC-CCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBC-----CHHHHHHHHTTCSSCHHHHHHH
T ss_pred HHHhhccc-ccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchh-----hhHHHHHHHcCCCCCHHHHHHH
Confidence 75432221 35667889999999999999999999999888999999999998 9999999999999999999999
Q ss_pred HHHh---------------------------------------------------------hhhcCCCCCCcchhhhccC
Q psy6304 292 RQLR---------------------------------------------------------RLLDCTYCVCPVNFGRRLD 314 (407)
Q Consensus 292 RqL~---------------------------------------------------------~~~~y~RifNPv~Q~~~~D 314 (407)
|||+ |. .|||||||++|++|||
T Consensus 354 rqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~-~~fRifNP~~Q~~kfD 432 (537)
T 3fy4_A 354 VQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFY-QFNRIYSPISFGKKYD 432 (537)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCC-CTTCCCCTTTTGGGTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCc-ccccccCHHHHHHHhC
Confidence 9999 11 2799999999999999
Q ss_pred CCCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-ccCCchHHHH
Q psy6304 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI-INKDYPERIV 393 (407)
Q Consensus 315 p~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~~~-~~~~~~~~~~ 393 (407)
|+|+|||+|||||++||+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|+++++... ..+.+++.-+
T Consensus 433 p~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~~~~~~~~~~~~~ 512 (537)
T 3fy4_A 433 PDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKKMDGKVDEENL 512 (537)
T ss_dssp TTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999877554 3447788999
Q ss_pred HHHHHhhhhhcc
Q psy6304 394 NHVQASLENKQN 405 (407)
Q Consensus 394 ~~~~~~~~~~~~ 405 (407)
+.++++++.+..
T Consensus 513 ~~~~~~~~~~~~ 524 (537)
T 3fy4_A 513 RDLRRKLQKDEH 524 (537)
T ss_dssp HHHHHHHHHHTT
T ss_pred ccccccccCCCC
Confidence 999999987654
No 2
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=7.1e-82 Score=652.63 Aligned_cols=369 Identities=45% Similarity=0.845 Sum_probs=296.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhc---CCcEEEEECChHHHHHHHHHHhCCceEEEEeeece---------------
Q psy6304 4 GTMHIGYNRFRFLLECLADLDRQLKSH---GGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG--------------- 65 (407)
Q Consensus 4 ~~~~~~~~r~~Fl~esL~~L~~~L~~~---G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~--------------- 65 (407)
+.++.|++|++||++||.+|+++|+++ |++|+|++|+|.++|++|+++++|++|++|++|++
T Consensus 47 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~ 126 (538)
T 3tvs_A 47 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRE 126 (538)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999 99999999999999999999999999999999988
Q ss_pred --eeeEE-----ec------C--CCCCCCccCcchhHHHHhhhcCCCCCCCCCCccccccc--CCcchhHHhhhh-ccCC
Q psy6304 66 --VKPYQ-----SF------P--TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTF--GTMSESLQREVS-LFQT 127 (407)
Q Consensus 66 --v~~~~-----i~------~--~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~~~~~--~~~~~~~~~~~~-~~~~ 127 (407)
|.+++ |+ + ++.+|.+|+ +|+++++.+..+..|.+.|....+.. .|.... .... .. .
T Consensus 127 ~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~---~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~--~~~~~~~-~ 200 (538)
T 3tvs_A 127 LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHTVQIIGLPPRPTADARLEDATFVELDPEFC--RSLKLFE-Q 200 (538)
T ss_dssp SSCCCCEECCSSSSCTTHHHHHTTTSCCCSHH---HHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTT--TTSCCBS-S
T ss_pred CCceEEEecCCEEEChhhcccCCCCCCCcchH---HHHHHHHhhCCCCCCCCCccccccccccCCcccc--ccccccc-C
Confidence 44444 22 2 355788899 78888877655444444442211111 111100 0000 01 4
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHH
Q psy6304 128 VPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFY 207 (407)
Q Consensus 128 ~p~l~~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~ 207 (407)
+|+++++|+.+..........|+|||.+|+++|++|+..+...++.+|++.+++++++.++||+|||||+|||||||+|+
T Consensus 201 ~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~ 280 (538)
T 3tvs_A 201 LPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFY 280 (538)
T ss_dssp CCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHH
T ss_pred CCCHHHcCCCcccccccccCCCCCCHHHHHHHHHHHHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHH
Confidence 56777777654321001234689999999999999993221125889999888876545799999999999999999999
Q ss_pred HHHHHhhcccCCC------CCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCC
Q psy6304 208 WALHDHFNTIHEG------RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQ 281 (407)
Q Consensus 208 ~~~~~~~~~~~~~------~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~ 281 (407)
+++.+........ ...+.++|++||+|||||+++++++|++...++++.++.++|... |++.|++|++|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~----~~~~~~aW~~G~ 356 (538)
T 3tvs_A 281 WSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKP----NENLLQSWRLGQ 356 (538)
T ss_dssp HHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHHHHHHHHHHHHSSCTTSSSSCSSCCCCCCCCC----CSSHHHHHHTTC
T ss_pred HHHHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHhCcchhhccCChhhhcCCcccc----CHHHHHHHHhCC
Confidence 9998754321110 114567899999999999999999999998889999999999741 567899999999
Q ss_pred CCchhhhHhhHHHh---------------------------------------------------------h-hhcCCCC
Q psy6304 282 TGYPFIDAVMRQLR---------------------------------------------------------R-LLDCTYC 303 (407)
Q Consensus 282 TG~PlVDAaMRqL~---------------------------------------------------------~-~~~y~Ri 303 (407)
|||||||||||||+ | ..|||||
T Consensus 357 TG~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRi 436 (538)
T 3tvs_A 357 TGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLV 436 (538)
T ss_dssp SSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHH
T ss_pred CCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCCCchHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceee
Confidence 99999999999999 1 4678999
Q ss_pred CCcchhhhccCCCCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhcc
Q psy6304 304 VCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382 (407)
Q Consensus 304 fNPv~Q~~~~Dp~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~~ 382 (407)
|||++|++||||+|+|||+|||||++||+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|+++++..
T Consensus 437 fNP~~Q~~kfDp~G~YIrrwvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVdh~~ar~~al~~~~~~~~~~ 515 (538)
T 3tvs_A 437 TCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSL 515 (538)
T ss_dssp CSTTTHHHHSCTTCTTGGGTCGGGSSSCCSSCCSHHHHHTTHHHHSSCCSSSSSCCCSSCSHHHHHHHHHHHHTTTTTT
T ss_pred eCHHHHHHHhCCCcchHHHhChhhcCCCHHhhcCcccCCHHHHHHcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
No 3
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=5.8e-80 Score=641.33 Aligned_cols=376 Identities=34% Similarity=0.592 Sum_probs=294.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------eee
Q psy6304 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------VKP 68 (407)
Q Consensus 6 ~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v~~ 68 (407)
+..|++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|+++++|+| |.+
T Consensus 77 ~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~ 156 (543)
T 2wq7_A 77 MQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRV 156 (543)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEE
Confidence 468999999999999999999999999999999999999999999999999999999987 455
Q ss_pred EE-----e------cC--CCCCCCccCcchhHHHHhhhcCCCCCCCCCCccccccc--CCcchhHHhh-hhccCCCCCCc
Q psy6304 69 YQ-----S------FP--TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTF--GTMSESLQRE-VSLFQTVPKPE 132 (407)
Q Consensus 69 ~~-----i------~~--~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~~~~~--~~~~~~~~~~-~~~~~~~p~l~ 132 (407)
++ | ++ .|++|.+|| +|++.+..+..+. |.+.|.. +.. .|....+... .... .+|+++
T Consensus 157 ~~~~~~~l~~p~~v~~~~~g~~~~vft---~F~~~~~~~~~~~-p~~~p~~--~~~~~~p~~~~~~~~~~~~~-~~p~l~ 229 (543)
T 2wq7_A 157 ETHCSHTIYNPELVIAKNLGKAPITYQ---KFLGIVEQLKVPK-VLGVPEK--LKNMPTPPKDEVEQKDSAAY-DCPTMK 229 (543)
T ss_dssp EEECCSSSSCHHHHHHHTTTSCCCSHH---HHHHHHTTSCCCC-CCCCCCC--CSSCCCCCCCHHHHHCTTTT-SCCCHH
T ss_pred EEecCCEEECccccccccCCCCCccHH---HHHHHHHHccCCC-CCCcchh--cccccccccccccccccccc-CCCCHH
Confidence 54 2 32 578899999 7877776643322 3333311 111 1111000000 0001 345555
Q ss_pred cCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHH
Q psy6304 133 QFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212 (407)
Q Consensus 133 ~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~ 212 (407)
++++.... .....|+|||.+|+++|++|+ +++..+.+|.+.++.+....++||+|||||+|||||||+|++++.+
T Consensus 230 ~l~~~~~~---~~~~~~~~Ge~~A~~~L~~Fl--~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~ 304 (543)
T 2wq7_A 230 QLVKRPEE---LGPNKFPGGETEALRRMEESL--KDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE 304 (543)
T ss_dssp HHCSCGGG---CCCCCSCCSHHHHHHHHHHHH--TCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHH
T ss_pred HcCCCccc---cccCCCCCCHHHHHHHHHHHH--hCChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHH
Confidence 55543221 112458999999999999999 6522389999888765432479999999999999999999999987
Q ss_pred hhcccCCCCCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhhH
Q psy6304 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMR 292 (407)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaMR 292 (407)
....... ...+.++|++||+|||||+++++++|++...++++.++.++|+. |++.|++|++|+|||||||||||
T Consensus 305 ~~~~~~~-~~~~~~~f~~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~~w~~-----~~~~~~aW~~G~TG~P~VDAaMr 378 (543)
T 2wq7_A 305 IIKRQPK-HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQE-----HPDHLEAWTHGRTGYPFIDAIMR 378 (543)
T ss_dssp HHHHCSS-CCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTCCCCCCCC-----CHHHHHHHHTTCSSCHHHHHHHH
T ss_pred HHhcccc-ccccHHHHHHHHHHHHHHHHHHHhCCccccccCChHhhcCCCcc-----CHHHHHHHHcCCCCCHHHHHHHH
Confidence 5433211 34667889999999999999999999999888999999999998 88899999999999999999999
Q ss_pred HHh---------------------------------------------------------hhhcCCCCCCcchhhhccCC
Q psy6304 293 QLR---------------------------------------------------------RLLDCTYCVCPVNFGRRLDP 315 (407)
Q Consensus 293 qL~---------------------------------------------------------~~~~y~RifNPv~Q~~~~Dp 315 (407)
||+ |.. |||||||++|++||||
T Consensus 379 qL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~-~~RifNP~~q~~kfDp 457 (543)
T 2wq7_A 379 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDP 457 (543)
T ss_dssp HHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTGGGGTCT
T ss_pred HHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHHHHHHHhccCCcccCHHHHHHHhcCCCcCc-cccccCHHHHhhhcCC
Confidence 999 112 7999999999999999
Q ss_pred CCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccCCchHHHHHH
Q psy6304 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNH 395 (407)
Q Consensus 316 ~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 395 (407)
+|+|||+|||||++||+++||+||+++..+++.+||.+|.+||.|||||+++|++|+++|+++++.....+ -+++-...
T Consensus 458 ~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~al~~~~~~~~~~~~~~-~~~~~~~~ 536 (543)
T 2wq7_A 458 QGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKVNREVR-TGKEEESS 536 (543)
T ss_dssp TCHHHHHHSGGGTTSCHHHHTSGGGSCHHHHHHTTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHC----
T ss_pred CchhHHHhCHHhhccccccccCcccCChHHHHhhcccccCCCCCCCCCHHHHHHHHHHHHHHHHhcccccC-CCcCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987663322 24555555
Q ss_pred HHHhhh
Q psy6304 396 VQASLE 401 (407)
Q Consensus 396 ~~~~~~ 401 (407)
+++++|
T Consensus 537 ~~~~~~ 542 (543)
T 2wq7_A 537 FEEKSE 542 (543)
T ss_dssp ------
T ss_pred Hhhhcc
Confidence 555544
No 4
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.1e-78 Score=623.59 Aligned_cols=349 Identities=20% Similarity=0.294 Sum_probs=283.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------e
Q psy6304 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------V 66 (407)
Q Consensus 4 ~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v 66 (407)
|+++.|++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|++|++|++ |
T Consensus 51 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi 130 (489)
T 1np7_A 51 GFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI 130 (489)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999999999999999999999999999987 4
Q ss_pred eeEE-----ec------C-CCCCCCccCcchhHHHHhh-hcCCCCCCCCCCcccccccCCcchhHHhhhhccCCCCCCcc
Q psy6304 67 KPYQ-----SF------P-TGSHPPRYQPCKTLLNFRD-LSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQ 133 (407)
Q Consensus 67 ~~~~-----i~------~-~g~~~~~ftp~~~f~~~~~-~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~~ 133 (407)
.+++ ++ + .|++|.+|| +|++.++ +......|.+.|.. +...+.. .... .+|++++
T Consensus 131 ~~~~~~~~~l~~~~~~~~~~g~~~~vft---~F~~~~~~~~~~~~~p~~~p~~--~~~~~~~------~~~~-~~~~~~~ 198 (489)
T 1np7_A 131 EAKGYWGSTLCHPEDLPFSIQDLPDLFT---KFRKDIEKKKISIRPCFFAPSQ--LLPSPNI------KLEL-TAPPPEF 198 (489)
T ss_dssp EEEEECCSSSSCGGGSSSCGGGCCSSHH---HHHHHHHTTTCCCCCCCCCCSC--CCCCCCC------CCCC-CCCCGGG
T ss_pred eEEEecCCeeeCccccccCCCCCCchHH---HHHHHHHHhccCCCCCCCCccc--ccCcccc------cccc-CCCCHhh
Confidence 4544 22 2 567899999 7877776 43222233333321 1111100 0001 3455556
Q ss_pred CCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHh
Q psy6304 134 FHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213 (407)
Q Consensus 134 lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~ 213 (407)
+++.... ......|+|||++|+++|++|+ .....+.+|.+.++++++ .++||+|||||+|||||||+|++++.+.
T Consensus 199 l~~~~~~--~~~~~~~~~Ge~~A~~~L~~Fl--~~~~~l~~Y~~~Rd~~~~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~ 273 (489)
T 1np7_A 199 FPQINFD--HRSVLAFQGGETAGLARLQDYF--WHGDRLKDYKETRNGMVG-ADYSSKFSPWLALGCLSPRFIYQEVKRY 273 (489)
T ss_dssp SCCCCCC--TTSSCCCCCSHHHHHHHHHHHH--TTSCCGGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHH
T ss_pred cCCCCcC--ccccCCCCCcHHHHHHHHHHHH--hcchhHhhhhhcccCCcc-ccCCcCcChhhcCCCCCHHHHHHHHHHH
Confidence 6553311 0112358999999999999999 422358999988877765 5799999999999999999999999874
Q ss_pred hcccCCCCCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhhHH
Q psy6304 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaMRq 293 (407)
..... ...+.++|++||+|||||+++++++|++.....+..++.++|.. |++.|++|++|+||||||||||||
T Consensus 274 ~~~~~--~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~-----d~~~~~aW~~G~TG~P~vDAaMrq 346 (489)
T 1np7_A 274 EQERV--SNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQE-----DQVRFELWRSGQTGYPLVDANMRE 346 (489)
T ss_dssp HHHTC--CSHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTTTTTCCCCCBC-----CHHHHHHHHTTCSSCHHHHHHHHH
T ss_pred hhccc--ccchHHHHHHHHHHHHHHHHHHHHCcchhhhhcCcccccCCCcc-----CHHHHHHHHcCCCCChhHHHHHHH
Confidence 32211 24567789999999999999999999988777777788899998 999999999999999999999999
Q ss_pred Hh--------------------------------------------------------hhhcCCCCCCcchhhhccCCCC
Q psy6304 294 LR--------------------------------------------------------RLLDCTYCVCPVNFGRRLDPDG 317 (407)
Q Consensus 294 L~--------------------------------------------------------~~~~y~RifNPv~Q~~~~Dp~G 317 (407)
|+ |.. |||||||++|++||||+|
T Consensus 347 L~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~N~g~wqw~ag~g~d~~-~~RifNp~~q~~kfDp~g 425 (489)
T 1np7_A 347 LNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDAR-DFRYFNIPKQSQQYDPQG 425 (489)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCCTT-SCCCCCHHHHHHHHSTTS
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHHHHHhcccChhcChHhhhhhhccCCCcc-cccccCHHHHhhhcCCCC
Confidence 99 112 699999999999999999
Q ss_pred chhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHH
Q psy6304 318 IYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377 (407)
Q Consensus 318 ~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~ 377 (407)
+|||||||||+++|+++||+||+++..+++++||.+|.+||.|||||+++|++|+++++.
T Consensus 426 ~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~ 485 (489)
T 1np7_A 426 TYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQSVEARRKIEQM 485 (489)
T ss_dssp HHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCHHHHHHHHHTCC--
T ss_pred ccHHHhCHHhhccCcccccCCccCCHHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999998874
No 5
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=9.1e-78 Score=621.42 Aligned_cols=350 Identities=20% Similarity=0.258 Sum_probs=280.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCcEEEEE-CChHHHHHHHHHHhCCceEEEEeeece-----------------eeeE
Q psy6304 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-GSPISIFQKLKRELNFTKLCFEQDCEG-----------------VKPY 69 (407)
Q Consensus 8 ~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~-G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v~~~ 69 (407)
.+..+..||++||++|+++|+++|++|+|+. |++.++|.+|+++++|++|++|++++| |+++
T Consensus 55 ~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~ 134 (509)
T 1u3d_A 55 PGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134 (509)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEE
Confidence 3566666999999999999999999999998 699999999999999999999999987 4555
Q ss_pred E-----e------cC-CCCCCCccCcchhHHHHhhhcC-CCCCCCCCCcccccccCCcchhHHhhhhccCCCCCCccCCC
Q psy6304 70 Q-----S------FP-TGSHPPRYQPCKTLLNFRDLSG-LPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHK 136 (407)
Q Consensus 70 ~-----i------~~-~g~~~~~ftp~~~f~~~~~~~~-~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lg~ 136 (407)
+ | .+ .|++|.+|| +|++.+.+.. .+..+.+.|.. + +.. .+ ..++++++++
T Consensus 135 ~~~~~~l~~p~~v~~~~g~~~~vft---pf~r~~~~~~~~~~~~~~~p~~--~---~~~--------~~-~~~~~~~l~~ 197 (509)
T 1u3d_A 135 SFNADLLYEPWEVTDELGRPFSMFA---AFWERCLSMPYDPESPLLPPKK--I---ISG--------DV-SKCVADPLVF 197 (509)
T ss_dssp EECCSCSSCGGGCCCSSSCCCSSHH---HHHHHHHTCSSCCCCCCCCCSC--C---CBT--------TG-GGSSCCCCCC
T ss_pred EECCCEEEcCCcccCCCCCCchhHH---HHHHHHHhccCCCCCCCCCccc--c---Ccc--------cc-CCCChhHhCC
Confidence 4 2 23 678899999 7777765532 22222222211 1 100 00 1122334443
Q ss_pred CCCCC---CCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHh
Q psy6304 137 YPEMD---FGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213 (407)
Q Consensus 137 ~~~~~---~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~ 213 (407)
.+... .......|+|||.+|+++|++|+ +. .+.+|...++.+. .++||+|||||+|||||||+|++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl--~~--~l~~Y~~~Rd~p~--~~~tS~LSPyL~~G~LSpR~v~~~~~~~ 271 (509)
T 1u3d_A 198 EDDSEKGSNALLARAWSPGWSNGDKALTTFI--NG--PLLEYSKNRRKAD--SATTSFLSPHLHFGEVSVRKVFHLVRIK 271 (509)
T ss_dssp CCHHHHHHHTTHHHHCCCSHHHHHHHHHHHH--TT--GGGGTTTTTTCSS--STTSCCCHHHHHTTSSCHHHHHHHHHHH
T ss_pred CcccccchhhhccccCCCcHHHHHHHHHHHH--HH--HHHhhhhccCCCC--CCCCCCCChhhccCCCCHHHHHHHHHHH
Confidence 32100 00001238999999999999999 65 3889988776543 4689999999999999999999998764
Q ss_pred h-----cccCCCCCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhh
Q psy6304 214 F-----NTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFID 288 (407)
Q Consensus 214 ~-----~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVD 288 (407)
. ..... ...+.++|++||+|||||+++++++|++...+++..++.++|+. |++.|++|++|+|||||||
T Consensus 272 ~~~~~~~~~~~-~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~-----d~~~~~aW~~G~TG~P~VD 345 (509)
T 1u3d_A 272 QVAWANEGNEA-GEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAV-----DENYFKAWRQGRTGYPLVD 345 (509)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCC-----CHHHHHHHHHTCSSCHHHH
T ss_pred hhhhccccccc-ccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcC-----ChHHHHHHHcCCCCCHhHH
Confidence 2 11000 13457789999999999999999999988778888889999999 9999999999999999999
Q ss_pred HhhHHHh--------------------------------------------------------hhhcCCCCCCcchhhhc
Q psy6304 289 AVMRQLR--------------------------------------------------------RLLDCTYCVCPVNFGRR 312 (407)
Q Consensus 289 AaMRqL~--------------------------------------------------------~~~~y~RifNPv~Q~~~ 312 (407)
||||||+ +..||||||||++|++|
T Consensus 346 AaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d~~py~RifNP~~Q~~k 425 (509)
T 1u3d_A 346 AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYK 425 (509)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCCCCccccccCHHHHHHh
Confidence 9999999 35689999999999999
Q ss_pred cCCCCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccccC
Q psy6304 313 LDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINK 386 (407)
Q Consensus 313 ~Dp~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~~~~~~ 386 (407)
|||+|+|||||||||++||+++||+||+++..+++.+||.+|.+||.|||||+++|++|+++|+++++.....+
T Consensus 426 fDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~~~~~~~~~~ 499 (509)
T 1u3d_A 426 FDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAASR 499 (509)
T ss_dssp HCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHCC--
T ss_pred cCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764443
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=4e-76 Score=605.33 Aligned_cols=343 Identities=24% Similarity=0.362 Sum_probs=275.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------ee
Q psy6304 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------VK 67 (407)
Q Consensus 5 ~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v~ 67 (407)
.+..|++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|++|+++++ |.
T Consensus 44 ~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~ 123 (484)
T 1owl_A 44 SADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIR 123 (484)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcE
Confidence 4678999999999999999999999999999999999999999999999999999999988 45
Q ss_pred eEE-----e------cC-CCCCCCccCcchhHHHHhhhcCCCCCCCCCCcccccccCCcchhHHh-hhh-ccCCCCCCcc
Q psy6304 68 PYQ-----S------FP-TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQR-EVS-LFQTVPKPEQ 133 (407)
Q Consensus 68 ~~~-----i------~~-~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~-~~~-~~~~~p~l~~ 133 (407)
+++ | .+ .|++|.+|| +|++++.+... +.|.+.|.. +...+... ... ... .. .+|+++.
T Consensus 124 ~~~~~~~~l~~~~~~~~~~g~~~~vft---~f~~~~~~~~~-~~p~~~p~~--~~~~~~~~-~~~~~~~~~~-~~~~~~~ 195 (484)
T 1owl_A 124 AVQLWDQLLHSPDQILSGSGNPYSVYG---PFWKNWQAQPK-PTPVATPTE--LVDLSPEQ-LTAIAPLLLS-ELPTLKQ 195 (484)
T ss_dssp EEEECCSSSSCTTTCCCTTSCCCSSHH---HHHHHHHHSCC-CCCCCCCCS--CCCCCHHH-HHHHGGGCCS-SCCCTGG
T ss_pred EEEecCCEEEchhhhcccCCCCchhhH---HHHHHHHHhcC-CCCCCCccc--cccccccc-cccccccccC-CCCCHHH
Confidence 554 2 22 568999999 78777765432 233333321 11100000 000 000 11 3455555
Q ss_pred CCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHh
Q psy6304 134 FHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213 (407)
Q Consensus 134 lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~ 213 (407)
+++.... . . .|+|||++|+++|++|+ +. .+.+|.+.++.+ + .++||+|||||+|||||||+|++++.+.
T Consensus 196 l~~~~~~---~-~-~~~~Ge~~A~~~L~~Fl--~~--~l~~Y~~~rd~p-~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~ 264 (484)
T 1owl_A 196 LGFDWDG---G-F-PVEPGETAAIARLQEFC--DR--AIADYDPQRNFP-A-EAGTSGLSPALKFGAIGIRQAWQAASAA 264 (484)
T ss_dssp GTCCCCS---C-C-SSCSSHHHHHHHHHHHH--HT--GGGGHHHHTTCT-T-SCCSCCCHHHHHTTSSCHHHHHHHHHHH
T ss_pred cCCCccc---c-C-cCCCCHHHHHHHHHHHH--HH--HHHHhccccCCC-C-ccCCcCccHhHcCCCcCHHHHHHHHHHH
Confidence 5543321 1 3 68999999999999999 65 489998887654 4 5799999999999999999999999865
Q ss_pred hccc--CCCCCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhh
Q psy6304 214 FNTI--HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291 (407)
Q Consensus 214 ~~~~--~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaM 291 (407)
.... .. ...+.+.|++||+|||||+++++++|++...++++.++.++|+. |++.|++|++|+||||||||||
T Consensus 265 ~~~~~~~~-~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~w~~-----d~~~~~aW~~G~TG~P~vDAaM 338 (484)
T 1owl_A 265 HALSRSDE-ARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWEN-----REALFTAWTQAQTGYPIVDAAM 338 (484)
T ss_dssp HHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCSTGGGGCCCCC-----CHHHHHHHHTTCSSCHHHHHHH
T ss_pred hccccccc-ccccHHHHHHHHHHHHHHHHHHHhCCccccccCChhhhcCCCcC-----CHHHHHHHHcCCCCChhHHHHH
Confidence 4310 00 12456789999999999999999999999888999999999998 9999999999999999999999
Q ss_pred HHHh--------------------------------------------------------hhhcCCCCCCcchhhhccCC
Q psy6304 292 RQLR--------------------------------------------------------RLLDCTYCVCPVNFGRRLDP 315 (407)
Q Consensus 292 RqL~--------------------------------------------------------~~~~y~RifNPv~Q~~~~Dp 315 (407)
|||+ |..| ||||||++|++||||
T Consensus 339 rqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~p-fRifNp~~q~~kfDp 417 (484)
T 1owl_A 339 RQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417 (484)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHHHHST
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcccCCcccCHHHHHHhhCcCCCCCc-cceeCHHHHhhhcCC
Confidence 9999 2234 899999999999999
Q ss_pred CCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhcc
Q psy6304 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANC 382 (407)
Q Consensus 316 ~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~~ 382 (407)
+|+|||||||||+++|+++||+||+++. .+ | +||.|||||+++|++|+++|+++++..
T Consensus 418 ~g~yIr~wvPeL~~~p~~~ih~Pw~~~~----~~----~-~YP~PiVd~~~~r~~a~~~~~~~~~~~ 475 (484)
T 1owl_A 418 TATYIKRWLPELRHVHPKDLISGEITPI----ER----R-GYPAPIVNHNLRQKQFKALYNQLKAAI 475 (484)
T ss_dssp TCHHHHHHCGGGTTSCHHHHHHTCCCHH----HH----T-TSCCCSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHhChhhhcCChhhcCCcccchh----hh----c-CCCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999832 22 3 899999999999999999999998744
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.8e-76 Score=603.95 Aligned_cols=335 Identities=20% Similarity=0.258 Sum_probs=272.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEE----ECChHHHHHHHHHHhCCceEEEEeeece---------------e
Q psy6304 6 MHIGYNRFRFLLECLADLDRQLKSHGGQLFIV----QGSPISIFQKLKRELNFTKLCFEQDCEG---------------V 66 (407)
Q Consensus 6 ~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~----~G~~~~vl~~L~~~~~i~~V~~~~~~~~---------------v 66 (407)
+..|++|++||++||++|+++|+++|++|+|+ .|++.++|.+|+++++|++|++|+++++ |
T Consensus 44 ~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~i 123 (471)
T 1dnp_A 44 HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 123 (471)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcCc
Confidence 56899999999999999999999999999999 9999999999999999999999999987 3
Q ss_pred eeEE-----ec------C-CCCCCCccCcchhHHHHhhhc-CC-CCCCCCCCcccccccCCcchhHHhhhhccCCCCCCc
Q psy6304 67 KPYQ-----SF------P-TGSHPPRYQPCKTLLNFRDLS-GL-PPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE 132 (407)
Q Consensus 67 ~~~~-----i~------~-~g~~~~~ftp~~~f~~~~~~~-~~-~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 132 (407)
.+++ |+ + .|++|.+|| +|++++.+. .. ++.+.+.|.. +.. +. .... .+|+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~g~~~~vft---~f~~~~~~~l~~~~p~~~~~p~~--~~~-~~-------~~~~-~~~~-- 187 (471)
T 1dnp_A 124 VCEGFDDSVILPPGAVMTGNHEMYKVFT---PFKNAWLKRLREGMPECVAAPKV--RSS-GS-------IEPS-PSIT-- 187 (471)
T ss_dssp EEEEECCSSSSCTTSSCCTTSCCCSSHH---HHHHHHHHHHHTCCCCCCCCCCC--CTT-CC-------CCCC-CCCC--
T ss_pred EEEEecCCEEEchhhcccCCCCCCcchH---HHHHHHHHhccccCCCCCCCccc--cCc-cc-------ccCC-CCcc--
Confidence 4444 22 2 568999999 666665442 11 1222333321 110 10 0000 2222
Q ss_pred cCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHH
Q psy6304 133 QFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212 (407)
Q Consensus 133 ~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~ 212 (407)
+++.... .....|+|||++|+++|++|+ +. .+.+|.+.++.+ + .++||+|||||+|||||||+|++++.+
T Consensus 188 -l~~~~~~---~~~~~~~~Ge~~A~~~L~~Fl--~~--~l~~Y~~~rd~p-~-~~~tS~LSpyL~~G~lSpr~v~~~~~~ 257 (471)
T 1dnp_A 188 -LNYPRQS---FDTAHFPVEEKAAIAQLRQFC--QN--GAGEYEQQRDFP-A-VEGTSRLSASLATGGLSPRQCLHRLLA 257 (471)
T ss_dssp -CCSCCCC---CCTTTSCCSHHHHHHHHHHHH--HT--HHHHHHHHTTCT-T-SCCSCCCHHHHHHTSSCHHHHHHHHHH
T ss_pred -cCCCccc---cccccCCCCHHHHHHHHHHHH--HH--HHHHhhhccCCc-C-ccCCCCCCHhHcCCCcCHHHHHHHHHH
Confidence 3322111 112458999999999999999 65 389998877654 4 578999999999999999999999987
Q ss_pred hhcccCCCCCCc-hhHHHHHHHHHHHHHHHHhcCCCcccc-cCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHh
Q psy6304 213 HFNTIHEGRPPS-HFNITGQLIWREYFYTMSAHNPYYDQM-EKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAV 290 (407)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~eL~WRef~~~~~~~~p~~~~~-~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAa 290 (407)
..... ...+ .+.|++||+|||||+++++++|++... ++++.++.++|+. |++.|++|++|+|||||||||
T Consensus 258 ~~~~~---~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~l~w~~-----d~~~~~aW~~G~TG~P~vDAa 329 (471)
T 1dnp_A 258 EQPQA---LDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQS-----NPAHLQAWQEGKTGYPIVDAA 329 (471)
T ss_dssp HCGGG---GGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCC-----CHHHHHHHHHTCSSCHHHHHH
T ss_pred Hhccc---cccccHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhcCCCcC-----CHHHHHHHHhCCCCCHHHHHH
Confidence 54321 1245 678999999999999999999999877 8888899999998 999999999999999999999
Q ss_pred hHHHh--------------------------------------------------------hhhcCCCCCCcchhhhccC
Q psy6304 291 MRQLR--------------------------------------------------------RLLDCTYCVCPVNFGRRLD 314 (407)
Q Consensus 291 MRqL~--------------------------------------------------------~~~~y~RifNPv~Q~~~~D 314 (407)
||||+ +..||||||||++|++|||
T Consensus 330 MrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ag~G~d~~py~RifNp~~q~~kfD 409 (471)
T 1dnp_A 330 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFD 409 (471)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHT
T ss_pred HHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHHHHhccCCCcccCHHHHHhhcCCCCCCCCcceecCHHHHHHhcC
Confidence 99999 3457899999999999999
Q ss_pred CCCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy6304 315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380 (407)
Q Consensus 315 p~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~ 380 (407)
|+|.|||||||||++||+++||+||++ ++.+||.+ +||.|||||+++|++|+++|+++++
T Consensus 410 p~G~YIrrwvPeL~~~p~~~ih~Pw~~----~~~~~~~~--~YP~PiVd~~~~r~~al~~~~~~~~ 469 (471)
T 1dnp_A 410 HEGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTL--DYPQPIVEHKEARVQTLAAYEAARK 469 (471)
T ss_dssp TTCHHHHHHCGGGTTSCTTGGGSHHHH----HHTTTCCC--SSCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred CCchhHHHhChhhccCChhhcCCchhh----HHhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999986 45678876 8999999999999999999998874
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-73 Score=576.78 Aligned_cols=307 Identities=22% Similarity=0.282 Sum_probs=252.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------eeeEE
Q psy6304 8 IGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------VKPYQ 70 (407)
Q Consensus 8 ~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v~~~~ 70 (407)
.|++|++||++||++|+++|+++|++|+|+.|++.++|.+|++ +|++|++|+++++ |++++
T Consensus 46 ~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~ 123 (440)
T 2e0i_A 46 KSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKA 123 (440)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEE
Confidence 8999999999999999999999999999999999999999999 9999999999987 44554
Q ss_pred -----ecC-CCCCCCccCcchhHHHHhhhc-CCC-CCCCCCCcccccccCCcchhHHhhhhccCCCCCCccCCCCCCCCC
Q psy6304 71 -----SFP-TGSHPPRYQPCKTLLNFRDLS-GLP-PRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDF 142 (407)
Q Consensus 71 -----i~~-~g~~~~~ftp~~~f~~~~~~~-~~~-~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lg~~~~~~~ 142 (407)
|++ ..-+|++|| +|++++.+. ... +.+.+.|.. .|.+. . +.++..
T Consensus 124 ~~~~~l~~~~~~~y~vft---pf~~~~~~~~~~~p~~~~~~~~~-----~~~p~----------~---~~~lp~------ 176 (440)
T 2e0i_A 124 YEDYLLTPKSLFHHRNFT---SFYNEVSKVKVREPETMEGSFDV-----TDSSM----------N---VDFLLT------ 176 (440)
T ss_dssp ECCSCSSCGGGCCCSSHH---HHHHHHTTSCCCCCCCCCCCBCC-----CSSSB----------C---GGGGGG------
T ss_pred ecCCEEEcccccCcccCc---HHHHHHHHhcccccccCCCCccc-----CCCcc----------h---hhhCCc------
Confidence 344 222688999 787777654 211 111211110 01000 0 001100
Q ss_pred CCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHhhcccCCCCC
Q psy6304 143 GDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRP 222 (407)
Q Consensus 143 ~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~ 222 (407)
....++|||++|+++|+ |+ +. .+.+| +.++.+ + .++||+|||||+|||||||+|++++
T Consensus 177 --~~~~~~~Ge~~A~~~L~-Fl--~~--~l~~Y-~~rd~p-~-~~~tS~LSPyL~~G~lSpr~v~~~~------------ 234 (440)
T 2e0i_A 177 --FKKIESPLFRGGRREGL-YL--LH--RNVDF-RRRDYP-A-ENNNYRLSPHLKFGTISMREAYYTQ------------ 234 (440)
T ss_dssp --TCCCCCTTCCCSHHHHH-HH--HT--CCCCG-GGTTCT-T-TTCCCCCHHHHHTTSSCHHHHHHHS------------
T ss_pred --cccCCCCCHHHHHHHHH-HH--Hh--hhhcC-CcCCCc-c-ccCCCCccHhHhCCCCCHHHHHHHh------------
Confidence 12347999999999999 99 65 48999 877654 4 5799999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhhHHHh-------
Q psy6304 223 PSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------- 295 (407)
Q Consensus 223 ~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaMRqL~------- 295 (407)
.+.+.|++||+|||||+++++++|++...++++.++.++|.. |++.|++|++|+|||||||||||||+
T Consensus 235 ~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~-----d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHn 309 (440)
T 2e0i_A 235 KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWEN-----NESYFEAWKEGRTGYPIIDAGMRMLNSTGYING 309 (440)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCC-----CHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCccc-----chHHHHHHHhCCCCCHHHHHHHHHHHHHcchhH
Confidence 124579999999999999999999999888999999999998 99999999999999999999999999
Q ss_pred ---------------------------hhh--------------------cCCCCCCcchhhhccCCCCchhhhcccccc
Q psy6304 296 ---------------------------RLL--------------------DCTYCVCPVNFGRRLDPDGIYIKRYVPELR 328 (407)
Q Consensus 296 ---------------------------~~~--------------------~y~RifNPv~Q~~~~Dp~G~fIr~wvPEL~ 328 (407)
.++ .|||||||++|++||||+|+|||+|||||+
T Consensus 310 r~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~~~RifNp~~q~~kfDp~g~yIr~wvPeL~ 389 (440)
T 2e0i_A 310 RVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGVDYMFRVFNPWKQQEKFDPEAKFIKEWVEELK 389 (440)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCSCCCCCHHHHHHHHCTTCHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHcccCCccccHHHHHHHhCcCCCCCCCccCHHHHHHHhCCCcHhHHHhCHHhh
Confidence 011 278999999999999999999999999999
Q ss_pred CCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy6304 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381 (407)
Q Consensus 329 ~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~ 381 (407)
++|+++||+||++ +|.+||.|||||+++|++|+++|+++++.
T Consensus 390 ~~p~~~ih~pw~~-----------~~~~YP~PiVd~~~~r~~a~~~~~~~~~~ 431 (440)
T 2e0i_A 390 DVPPSIIHSIYKT-----------KVPGYPSPIVNWLERVNYVKSEYKNVKAV 431 (440)
T ss_dssp GSCHHHHTTTTTS-----------CCTTSCCCSSCHHHHHHHHHHHHHHC---
T ss_pred ccCcccccCchhh-----------cCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999985 36799999999999999999999987643
No 9
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=7.2e-73 Score=585.87 Aligned_cols=346 Identities=19% Similarity=0.236 Sum_probs=252.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------e
Q psy6304 4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------V 66 (407)
Q Consensus 4 ~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v 66 (407)
|++..|++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|+++++|++ |
T Consensus 86 ~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv 165 (525)
T 2j4d_A 86 NFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGN 165 (525)
T ss_dssp CCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999999999999999999999999999987 1
Q ss_pred --eeEE-----ec------C-CCCCCCccCcchhHHHHhhhcCCCCCCCCCCcccccccCCcchhHHhhhhccCCCCCCc
Q psy6304 67 --KPYQ-----SF------P-TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPE 132 (407)
Q Consensus 67 --~~~~-----i~------~-~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 132 (407)
.+++ |+ . .|++|.+|| +|++++.+...+..|.+.|.. +...+.. ... ..+|+++
T Consensus 166 ~i~~~~~~~~~L~~p~~v~~~~g~~~~vft---~F~r~~~~~~~~~~p~~~p~~--~~~~~~~------~~~-~~~~~l~ 233 (525)
T 2j4d_A 166 STKLELIWGSTMYHKDDLPFDVFDLPDVYT---QFRKSVEAKCSIRSSTRIPLS--LGPTPSV------DDW-GDVPTLE 233 (525)
T ss_dssp SCEEEEECCSCSSCGGGSSSCGGGCCSSHH---HHHHHHHHHCCCCCCCCBCSC--CCCCCCC------SCC-CCCCCTT
T ss_pred ceEEEEecCCEEEccccccccCCCCcccHH---HHHHHHHHhcCCCCCCCCccc--cCCcccc------ccc-cCCCCHH
Confidence 3444 22 2 467789999 787877663332333433321 1111100 001 1345555
Q ss_pred cCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHH
Q psy6304 133 QFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD 212 (407)
Q Consensus 133 ~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~ 212 (407)
++|+.... ......|+|||++|+++|++|+ .....+.+|.+.++++++ .++||+|||||+|||||||+|++++.+
T Consensus 234 ~l~~~~~~--~~~~~~~~~Ge~~A~~~L~~Fl--~~~~~l~~Y~~~Rd~~~~-~~~tS~LSPyL~~G~LSpR~v~~~~~~ 308 (525)
T 2j4d_A 234 KLGVEPQE--VTRGMRFVGGESAGVGRVFEYF--WKKDLLKVYKETRNGMLG-PDYSTKFSPWLAFGCISPRFIYEEVQR 308 (525)
T ss_dssp TTTCCCCC--CCSEEEECCSHHHHHHHHHHHH--TTSCCGGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHH
T ss_pred HcCCCccc--ccccCCCCCcHHHHHHHHHHHH--hhCchHhhhcccCCCccc-cccCCCcChhhcCCcCCHHHHHHHHHH
Confidence 56554320 0112348999999999999998 321248999988876655 579999999999999999999999986
Q ss_pred hhcccCCCCCCchhHHHHHHHHHHHHHHHHhcCC-CcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhh
Q psy6304 213 HFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNP-YYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM 291 (407)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p-~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaM 291 (407)
...... ...++++|++||+|||||++++.++| .+......+ ...++|+. |++.|++|++|+||||||||||
T Consensus 309 ~~~~~~--~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~-~~~~~w~~-----~~~~~~aW~~G~TG~P~VDAaM 380 (525)
T 2j4d_A 309 YEKERV--ANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPR-NVQGKWSQ-----DQKLFESWRDAKTGYPLIDANM 380 (525)
T ss_dssp HHHHTC--CSHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTT-TCCCCCBC-----CHHHHHHHHTTCSSCHHHHHHH
T ss_pred Hhhccc--ccccHHHHHHHHHHHHHHHHHHHHcCchhhhccCch-hhcCCCCC-----CHHHHHHHHcCCCCChHHHHHH
Confidence 543221 34567789999999999999987764 443333222 46788998 9999999999999999999999
Q ss_pred HHHh--------------------------------------------------------hhhcCCCCCCcchhhhccCC
Q psy6304 292 RQLR--------------------------------------------------------RLLDCTYCVCPVNFGRRLDP 315 (407)
Q Consensus 292 RqL~--------------------------------------------------------~~~~y~RifNPv~Q~~~~Dp 315 (407)
|||+ |..+ ||||||++|+++|||
T Consensus 381 rqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~n~g~WQw~aG~g~D~~~-~RifNP~~q~kk~Dp 459 (525)
T 2j4d_A 381 KELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDP 459 (525)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGG-CCCCCHHHHHHHHCT
T ss_pred HHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHHHHHHHhccccchhcChHHHHhhcCCCCCccc-cccCCHHHHhhhcCC
Confidence 9999 2233 799999999999999
Q ss_pred CCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy6304 316 DGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380 (407)
Q Consensus 316 ~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~ 380 (407)
+|.|||||||||++||+++||+||+++ .++|.||.+||.|||||.++|+.+.+.+++.++
T Consensus 460 ~G~YIrrwvPEL~~~p~~~ih~Pw~~~-----~~~~~~g~~Yp~Pi~~~~~~~~~~~~~~~~~~~ 519 (525)
T 2j4d_A 460 EGEYVAFWLQQLRRLPKEKRHWPGRLM-----YMDTVVPLKHGNGPMAGGSKSGGGFRGSHSGRR 519 (525)
T ss_dssp TCHHHHHHSGGGTTSCTTTTTSCHHHH-----TCCCSSCCSCCC---------------------
T ss_pred CchhHHHhChhhhcCChhcccCCccCc-----ccccccCCCCCCCcccchhhhhccchhhhcccc
Confidence 999999999999999999999999863 578999999999999999999999998885443
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=9.8e-70 Score=548.40 Aligned_cols=300 Identities=22% Similarity=0.308 Sum_probs=252.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece--------------eeeEE----
Q psy6304 9 GYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG--------------VKPYQ---- 70 (407)
Q Consensus 9 ~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~--------------v~~~~---- 70 (407)
|++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|+.|++|+++++ |++++
T Consensus 43 ~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~i~~~~~~~~ 122 (420)
T 2j07_A 43 TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALPVPLHLLPAP 122 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCSSCEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHcCCeEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999987 34544
Q ss_pred -ecC--CCCCCCccCcchhHHHHhhhcCCCCCCCCCCcccccccCCcchhHHhhhhccCCCCCCccCCCCCCCCCCCCCC
Q psy6304 71 -SFP--TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLI 147 (407)
Q Consensus 71 -i~~--~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lg~~~~~~~~~~~~ 147 (407)
|++ .|++|.+|| +|++.+..+ ..|.+.|.. + ..|.. .. .+|. . +....
T Consensus 123 ~l~~~~~~~~~~~~t---~f~k~~~~~---~~p~~~p~~--~-~~p~~--------~~-~l~~--------~---~~~~~ 173 (420)
T 2j07_A 123 HLLPPDLPRAYRVYT---PFSRLYRGA---APPLPPPEA--L-PKGPE--------EG-EIPR--------E---DPGLP 173 (420)
T ss_dssp CSSCTTCSSCCSSHH---HHHTTCCCC---CCCCCCCSS--C-CCCCC--------CC-CCCC--------C---CCSSC
T ss_pred EEEccCCCCcccccc---HHHHHHhhc---cCCCCCccc--c-CCCCc--------cc-cCCC--------c---ccccc
Confidence 444 478899999 777766421 123332221 1 01100 00 1111 0 01124
Q ss_pred CCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHhhcccCCCCCCchhH
Q psy6304 148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFN 227 (407)
Q Consensus 148 ~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~ 227 (407)
.|+|||++|+++|++|+ ++ .+.+|.+.++.+ + .++||+|||||+|||||||+|++++.+.. ..+.+.
T Consensus 174 ~~~~Ge~~A~~~L~~Fl--~~--~l~~Y~~~rd~p-~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~~-------~~~~~~ 240 (420)
T 2j07_A 174 LPEPGEEAALAGLRAFL--EA--KLPRYAEERDRL-D-GEGGSRLSPYFALGVLSPRLAAWEAERRG-------GEGARK 240 (420)
T ss_dssp CCCCSHHHHHHHHHHHH--HH--TGGGHHHHTTCT-T-CTTSCCCHHHHHTTSSCHHHHHHHHHHHC-------SHHHHH
T ss_pred cCCCcHHHHHHHHHHHH--HH--HHhhhhhccCCC-C-ccCCCCcchhhcCCccCHHHHHHHHHHHh-------ccCHHH
Confidence 58999999999999999 65 389999887665 3 47999999999999999999999997642 235678
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhhHHHh------------
Q psy6304 228 ITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR------------ 295 (407)
Q Consensus 228 ~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaMRqL~------------ 295 (407)
|++||+|||||+++++++|++...++++.++.++|.. |++.|++|++|+|||||||||||||+
T Consensus 241 f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~-----d~~~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~ 315 (420)
T 2j07_A 241 WVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQE-----DEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMN 315 (420)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCC-----CHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccccchhhhcCCccc-----CHHHHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999998888999899999998 99999999999999999999999999
Q ss_pred --------------------------------------------hhhcCCCCCCcchhhhccCCCCchhhhccccccCCC
Q psy6304 296 --------------------------------------------RLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFP 331 (407)
Q Consensus 296 --------------------------------------------~~~~y~RifNPv~Q~~~~Dp~G~fIr~wvPEL~~lp 331 (407)
+..||||||||++|++||||+|+|||+|||||+++|
T Consensus 316 vasfl~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~~pyfR~fNp~~q~~kfDp~g~yir~w~pel~~~p 395 (420)
T 2j07_A 316 AAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA 395 (420)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHhhcCCccccHHHHHHHHccCCCCCCCceeeCHHHHHHHhCCCchhHHHhChhhcCCC
Confidence 456899999999999999999999999999999998
Q ss_pred CCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy6304 332 IQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380 (407)
Q Consensus 332 ~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~ 380 (407)
||.|||||+++|++|+++|+++++
T Consensus 396 -------------------------YP~Pivd~~~~r~~a~~~~~~~~~ 419 (420)
T 2j07_A 396 -------------------------PKDPVVDLEEARRRYLRLARDLAR 419 (420)
T ss_dssp -------------------------CSSCSSCHHHHHHHHHHHHHHHHC
T ss_pred -------------------------CCCCccCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998864
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=6.2e-55 Score=447.88 Aligned_cols=303 Identities=16% Similarity=0.104 Sum_probs=209.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-------------------
Q psy6304 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG------------------- 65 (407)
Q Consensus 5 ~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~------------------- 65 (407)
++..|++|++||++||++|+++|+++|++|+|+.|+|.++ ++|+++++|++|+++.++..
T Consensus 82 ~~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~g 160 (506)
T 3umv_A 82 LLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPG 160 (506)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCC
Confidence 4678999999999999999999999999999999999999 99999999999999766532
Q ss_pred eeeEE-----ecC-----CCCCCCccCcchhHHHHhhhcCCCCCCCCCCcccccc-cCCcchhHHhhhhccCCCCC-Ccc
Q psy6304 66 VKPYQ-----SFP-----TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVT-FGTMSESLQREVSLFQTVPK-PEQ 133 (407)
Q Consensus 66 v~~~~-----i~~-----~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~~~~-~~~~~~~~~~~~~~~~~~p~-l~~ 133 (407)
|.+++ |++ .+.+|.++|+++.+.+.+.....+..+.+.+.. .. ..+...++ .. ++. +..
T Consensus 161 i~~~~~~~~~l~~p~~v~~~~~~~~~t~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~----~~---l~~~~~~ 231 (506)
T 3umv_A 161 VAVHQVDAHNVVPVWTASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVP--WDREQPEGVDW----DA---LIARVCS 231 (506)
T ss_dssp SEEEEECCSCSSCHHHHCSSCCSSHHHHHHHHHTTHHHHSCCCCCCCCCCC--CCSCCCCCCCH----HH---HHHHHHH
T ss_pred eEEEEeCCcEEECcccccCCCCCCccCHHHHHHHhccccccCCCCCCCccc--cccccccccCh----hh---hhhhhcc
Confidence 23444 333 444566777332222222222111111111100 00 00000000 00 000 000
Q ss_pred CCCCCCCCCCCCCCCCCccHHHHHHHH----HHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHH
Q psy6304 134 FHKYPEMDFGDPLIRWLGGETEALIKL----NERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209 (407)
Q Consensus 134 lg~~~~~~~~~~~~~~~gGe~~A~~~L----~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~ 209 (407)
++.... ....++|||.+|+++| ++|+ .. .+.+|...++.+.. .++||+|||||+|||||||+|+++
T Consensus 232 ~~~~~~-----~~~~~~~Ge~~A~~~L~~~~~~Fl--~~--~l~~Y~~~Rd~p~~-~~~tS~LSPyL~~G~lS~r~v~~~ 301 (506)
T 3umv_A 232 EAENVP-----EIDWCEPGEEAAIEALLGSKDGFL--TK--RIKSYETDRNDPTK-PRALSGLSPYLHFGHISAQRCALE 301 (506)
T ss_dssp TSCCCC-----CCCSSCCSHHHHHHHHHCTTTCHH--HH--TGGGHHHHTTCTTC-GGGSCCCHHHHHHTSSCHHHHHHH
T ss_pred cccccc-----ccCCCCCCHHHHHHHHHhhHHHHH--Hh--HHhhhccccCCccc-cCCCccCCHHHhCCCcCHHHHHHH
Confidence 111100 1124689999999999 9999 65 38999988776542 369999999999999999999999
Q ss_pred HHHhhcccCCCCCCchhHHHHHHHHH-HHHHHHHhcCCCcccccCCccCCCCCCCCCC---CCCcH-H---HHHHHhcCC
Q psy6304 210 LHDHFNTIHEGRPPSHFNITGQLIWR-EYFYTMSAHNPYYDQMEKNPICLNIPWLPES---HPNKE-K---YLNAWKNGQ 281 (407)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~---~~~d~-~---~~~aW~~G~ 281 (407)
+.+.... ...+.++|++||+|| |||+++++++|++..... .++|...+ |..|. + .|++|++|+
T Consensus 302 ~~~~~~~----~~~~~~~f~~eL~WRREf~~~~~~~~p~~~~~~~-----~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~ 372 (506)
T 3umv_A 302 AKKCRHL----SPKSVDAFLEELVVRRELADNFCYYQPQYDSLSG-----AWEWARKTLMDHAADKREHIYTREQLENAK 372 (506)
T ss_dssp HHHHGGG----SHHHHHHHHHHHTHHHHHHHHHHHHCTTTTSGGG-----SCHHHHHHHHHTTTSCCSCCCCHHHHHTTC
T ss_pred HHHHHhh----ccccHHHHHHHHHHhHHHHHHHHHhCcchhhhhc-----cchhhhhhhhhhcccchhhhccHHHHHcCC
Confidence 9876432 245678999999996 999999999998865432 34564200 11122 2 399999999
Q ss_pred CCchhhhHhhHHHh---------------------------------------------------------------hhh
Q psy6304 282 TGYPFIDAVMRQLR---------------------------------------------------------------RLL 298 (407)
Q Consensus 282 TG~PlVDAaMRqL~---------------------------------------------------------------~~~ 298 (407)
||||+||||||||+ +..
T Consensus 373 TG~p~vDA~mrqL~~tG~mHnr~Rm~~ak~ll~W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~ 452 (506)
T 3umv_A 373 THDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKER 452 (506)
T ss_dssp SSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCB
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHhhccCCCCHHHHHHHHHHHhhccCcccCccccccceeEEecCCCCCCCccc
Confidence 99999999999998 012
Q ss_pred cCC---CCCCcchhhhccCCCC--chhhhccccccCCCCCcee
Q psy6304 299 DCT---YCVCPVNFGRRLDPDG--IYIKRYVPELRQFPIQYIY 336 (407)
Q Consensus 299 ~y~---RifNPv~Q~~~~Dp~G--~fIr~wvPEL~~lp~~~Ih 336 (407)
||| |||||++|++||||+| +|||+|||||+++|++.-+
T Consensus 453 p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~~~~~~~ 495 (506)
T 3umv_A 453 PVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEESP 495 (506)
T ss_dssp TTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCCCccccc
Confidence 456 9999999999999999 9999999999999987544
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=2.1e-53 Score=437.05 Aligned_cols=295 Identities=16% Similarity=0.154 Sum_probs=210.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece--------------eeeEE
Q psy6304 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG--------------VKPYQ 70 (407)
Q Consensus 5 ~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~--------------v~~~~ 70 (407)
....|++|++||++||++|+++|+++|++|+|+.|++.++|.+|+++++|++|++++++++ |++++
T Consensus 79 ~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~lgi~~~~ 158 (482)
T 2xry_A 79 FLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFE 158 (482)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCCSCEEE
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHcCCEEEE
Confidence 3457999999999999999999999999999999999999999999999999999999987 44544
Q ss_pred -----ecC-----CCCCCCccCcchhHHHHhhhcCCC-C--CCCCCCcccccc---cCCc-chhHHhhhhccCCCCCC--
Q psy6304 71 -----SFP-----TGSHPPRYQPCKTLLNFRDLSGLP-P--RPKEDIDFRHVT---FGTM-SESLQREVSLFQTVPKP-- 131 (407)
Q Consensus 71 -----i~~-----~g~~~~~ftp~~~f~~~~~~~~~~-~--~p~~~p~~~~~~---~~~~-~~~~~~~~~~~~~~p~l-- 131 (407)
|++ .++.|.+||+++.+++.+.....+ + .|.+.|. .+. ..+. ...+. ... .+|..
T Consensus 159 ~~~~~l~~~~~~~~~~~~~v~tf~~~~~~~~~~~~~~~p~~~p~~~~~--~lp~~~~~~~~~~~l~---~~~-~~~~~~~ 232 (482)
T 2xry_A 159 VDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTP--ELSAGAGMVETLSDVL---ETG-VKALLPE 232 (482)
T ss_dssp ECCSSSSCHHHHCSSCCSSHHHHHHHHHHHHHHHCCCCCCCCCCSSCC--C---------CHHHHH---HHH-HHHHGGG
T ss_pred EeCCEEccccccccCCCCceecchHHHHHHHHhhccccCCCCCCCCcc--ccCCccchhhhhhhhc---ccC-CCCCcch
Confidence 333 344588898554444444332221 1 1111110 000 0000 00000 000 01111
Q ss_pred ccCCCCCCCCCCCC-CCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHH
Q psy6304 132 EQFHKYPEMDFGDP-LIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210 (407)
Q Consensus 132 ~~lg~~~~~~~~~~-~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~ 210 (407)
+++|..... .. ...|+|||++|+++|++|+ +. .+.+|.+.++.+. .++||+|||||+|||||||+|++++
T Consensus 233 ~~~g~~~~~---~~~~~~~~~Ge~~A~~~L~~Fl--~~--~l~~Y~~~Rd~p~--~~~tS~LSPyL~~G~LSpR~v~~~~ 303 (482)
T 2xry_A 233 RALLKNKDP---LFEPWHFEPGEKAAKKVMESFI--AD--RLDSYGALRNDPT--KNMLSNLSPYLHFGQISSQRVVLEV 303 (482)
T ss_dssp CCBCTTSCB---CCCTTSCCCSHHHHHHHHHHHH--HH--THHHHHHHTTCTT--SCCSCCCHHHHHTTSSCHHHHHHHH
T ss_pred hhhcccccc---ccccCCCCCcHHHHHHHHHHHH--HH--HHhhhccccCCCC--ccCCCCcCHHHhCCccCHHHHHHHH
Confidence 123322111 10 1158999999999999999 65 3899998876653 4799999999999999999999999
Q ss_pred HHhhcccCCCCCCchhHHHHHHH-HHHHHHHHHhcCCCcccccCCccCCCC--C-CCCCCCCCcH-H---HHHHHhcCCC
Q psy6304 211 HDHFNTIHEGRPPSHFNITGQLI-WREYFYTMSAHNPYYDQMEKNPICLNI--P-WLPESHPNKE-K---YLNAWKNGQT 282 (407)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~eL~-WRef~~~~~~~~p~~~~~~~~~~~~~~--~-W~~~~~~~d~-~---~~~aW~~G~T 282 (407)
.+... ...+.++|++||+ |||||+++++++|++...+..+.+... . |.. |+ + .+++|++|+|
T Consensus 304 ~~~~~-----~~~~~e~fl~ELi~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~-----d~~~~~~~~~aw~~G~T 373 (482)
T 2xry_A 304 EKAES-----NPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRN-----DVRSHIYTLEEFEAGKT 373 (482)
T ss_dssp HHCCC-----CTTHHHHHHHHHTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTT-----SCCSCCCCHHHHHTTCS
T ss_pred HHhhc-----ccccHHHHHHHHHHHHHHHHHHHHhCCcccccccchHHHhhhhhhccc-----CchhhhHHHHHHHhCCc
Confidence 76432 2467889999998 999999999999998865543332110 0 222 32 1 5999999999
Q ss_pred CchhhhHhhHHHh----------------------------------------------------------h-----hhc
Q psy6304 283 GYPFIDAVMRQLR----------------------------------------------------------R-----LLD 299 (407)
Q Consensus 283 G~PlVDAaMRqL~----------------------------------------------------------~-----~~~ 299 (407)
||||||||||||+ + ..|
T Consensus 374 G~P~VDAaMrqL~~tG~mHnr~RM~vak~LidW~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p 453 (482)
T 2xry_A 374 HDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGERE 453 (482)
T ss_dssp SCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBT
T ss_pred CCHHHHHHHHHHHHhCccccHHHHHHHcccCCCCchHHHHHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCccccc
Confidence 9999999999999 0 125
Q ss_pred CC---CCCCcchhhhccCCCCchhhhccc
Q psy6304 300 CT---YCVCPVNFGRRLDPDGIYIKRYVP 325 (407)
Q Consensus 300 y~---RifNPv~Q~~~~Dp~G~fIr~wvP 325 (407)
|| |||||++|++||||+| |||+|||
T Consensus 454 ~fg~~R~fnp~~q~~kfD~~~-yir~w~~ 481 (482)
T 2xry_A 454 VTGKIRYMSYEGCKRKFDVKL-YIEKYSA 481 (482)
T ss_dssp TTBTSCCCCHHHHHHHSCHHH-HHHHTC-
T ss_pred ccccceeechhHhhhhcCHHH-HHHHHhc
Confidence 77 9999999999999999 9999995
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.3e-39 Score=330.63 Aligned_cols=340 Identities=11% Similarity=0.043 Sum_probs=222.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEE-------CChHHHHHHHHHHhCCceEEEEeeece----------ee
Q psy6304 5 TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQ-------GSPISIFQKLKRELNFTKLCFEQDCEG----------VK 67 (407)
Q Consensus 5 ~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~-------G~~~~vl~~L~~~~~i~~V~~~~~~~~----------v~ 67 (407)
....++.|..|++.||+++.++|++.|.+|+++. |++.++|.+++++++++.|++++-++. |+
T Consensus 54 ~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r~~~~l~~~gi~ 133 (522)
T 3zxs_A 54 YVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWRLIEALEAMPLP 133 (522)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHHHHHHHHHSSSC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHHHHHHHHHcCCc
Confidence 3566889999999999999999999999999998 999999999999999999999954432 33
Q ss_pred eEE------------ec---CCCCCCCccCcc-hhHHHHhhhcCCCCCCC------------CCCcccccccC--Ccchh
Q psy6304 68 PYQ------------SF---PTGSHPPRYQPC-KTLLNFRDLSGLPPRPK------------EDIDFRHVTFG--TMSES 117 (407)
Q Consensus 68 ~~~------------i~---~~g~~~~~ftp~-~~f~~~~~~~~~~~~p~------------~~p~~~~~~~~--~~~~~ 117 (407)
+.. +. .++++|.++ || |.++++..-+.....|. +.|.....+.. +.++.
T Consensus 134 v~~~~~~~fL~~~~e~~~~~~~~k~~~me-~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~ 212 (522)
T 3zxs_A 134 VRFLPDDRFLCPADEFARWTEGRKQLRME-WFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDA 212 (522)
T ss_dssp EEEECCCCSSSCHHHHHHHHTTCSSCCHH-HHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCH
T ss_pred EEEeCCCCcccCHHHHHHhhcCCCCeEee-HHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCch
Confidence 333 11 156777774 44 23332211000000111 00110000000 00000
Q ss_pred H-HhhhhccC-CCCCCccCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCC--CCCCCcCC
Q psy6304 118 L-QREVSLFQ-TVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDL--TGPPTSQS 193 (407)
Q Consensus 118 ~-~~~~~~~~-~~p~l~~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~--~~~tS~LS 193 (407)
+ ........ ..|. ..|- .....|++||.+|+++|++|+ +. .+.+|...++.+..- ..+||+||
T Consensus 213 ~~~~v~~~v~~~~~~--~~G~-------~~~~~~~~ge~~A~~~L~~Fl--~~--rl~~Y~~~rD~~~~~~~~~~tS~LS 279 (522)
T 3zxs_A 213 EVRAVLDLVEARFPR--HFGR-------LRPFHWATDRAEALRALDHFI--RE--SLPRFGDEQDAMLADDPFLSHALLS 279 (522)
T ss_dssp HHHHHHHHHHHHCTT--SSSC-------CCSCCCCCSHHHHHHHHHHHH--HH--TGGGTTTTTTCCBTTBSSTTCCCCH
T ss_pred hHHHHHHHHHHhccC--CcCc-------cccCCCCCCHHHHHHHHHHHH--Hh--hhhhhhhhccCcccCCCCCCccccc
Confidence 0 00000000 0010 0111 123569999999999999999 65 388888766544320 12699999
Q ss_pred cccccCcccHHHHHHHHHHhhcccCCCCCCchhHHHHHHH-HHHHHHHHHhcC-CCcccccCCccCCCCCCCCCCCCCcH
Q psy6304 194 AALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLI-WREYFYTMSAHN-PYYDQMEKNPICLNIPWLPESHPNKE 271 (407)
Q Consensus 194 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~eL~-WRef~~~~~~~~-p~~~~~~~~~~~~~~~W~~~~~~~d~ 271 (407)
|||+|||||||+|++++.+....... ...+.+.|++||+ |||||+++++++ |.+...++...+ .
T Consensus 280 pyL~~G~LSpRev~~~~~~~~~~~~~-~~~~~e~firellgWREF~~~l~~~~~P~~~~~n~~~~~-------------~ 345 (522)
T 3zxs_A 280 SSMNLGLLGPMEVCRRAETEWREGRA-PLNAVEGFIRQILGWREYVRGIWTLSGPDYIRSNGLGHS-------------A 345 (522)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHTHHHHHHHHHHHHGGGGGGCCTTCCC-------------B
T ss_pred HHHhCCCcCHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccccc-------------c
Confidence 99999999999999999865543211 2245678999997 999999999885 887655443221 1
Q ss_pred HHHHHHhcCCCCchhhhHhhHHHh----------------------------------hhhcCCC-CCC-----------
Q psy6304 272 KYLNAWKNGQTGYPFIDAVMRQLR----------------------------------RLLDCTY-CVC----------- 305 (407)
Q Consensus 272 ~~~~aW~~G~TG~PlVDAaMRqL~----------------------------------~~~~y~R-ifN----------- 305 (407)
...++|++|+||||+||||||||+ .++|++. |-.
T Consensus 346 ~l~~~~w~G~TG~P~VDA~MRqL~~TGwmHnr~RmmVasfl~k~L~idWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~ 425 (522)
T 3zxs_A 346 ALPPLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDALEWVEAPNTIGMSQFAD 425 (522)
T ss_dssp CCCGGGGTCCCSCHHHHHHHHHHHHHSCCCHHHHHHTHHHHHHHTTBCHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCS
T ss_pred cchHHHhcCCCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHcCCChHHHHHHHHHHhcchhhhhhccccccchheec
Confidence 223455699999999999999999 2445421 111
Q ss_pred -cchhhhccCCCCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy6304 306 -PVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN 381 (407)
Q Consensus 306 -Pv~Q~~~~Dp~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~ 381 (407)
=...+|.|.+.|.||+|. ++.+..+++.|++.... ..|.++..|...|..|.+.-+ .--|++.+.+.
T Consensus 426 Gg~~~~KPY~~~~~yI~km----s~yc~~c~y~~~~~~g~----~~cp~~~lYW~Fl~rh~~~l~-~n~Rm~~~~~~ 493 (522)
T 3zxs_A 426 HGLLGSKPYVSSGAYIDRM----SDYCRGCAYAVKDRTGP----RACPFNLLYWHFLNRHRARFE-RNPRMVQMYRT 493 (522)
T ss_dssp SSTTCSSCCCCCHHHHHHH----CSCGGGSSSBTTCSSST----TBCHHHHHHHHHHHHTHHHHT-TCGGGHHHHHH
T ss_pred CCccCCCCCCCchHHHHHH----hccccCCccCccccCCC----ccCCCccchHHHHHHHHHHHc-cChhHHHHHHH
Confidence 233589999999999998 68999999999987652 357777789999998876544 33344444333
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=69.17 E-value=10 Score=31.48 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCc---EEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 17 LECLADLDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~---L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
.+.|+++.+.+.+.|++ ..+..|+|.+.|.+++++.+++-|++-.
T Consensus 80 ~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 127 (163)
T 1tq8_A 80 YEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGN 127 (163)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECC
Confidence 35567777778888877 5677899999999999999999988754
No 15
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=66.84 E-value=13 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcCCc--EEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 16 LLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 16 l~esL~~L~~~L~~~G~~--L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
..+.|+++.+.+...|++ ..+..|+|.+.|.+.+++.+++-|++-.
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~ 128 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGS 128 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcC
Confidence 345566777777777877 4567899999999999999999888754
No 16
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=64.94 E-value=14 Score=29.33 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhcCC-----cEEEEECChHHHHHHHHHHhCCceEEEEee
Q psy6304 15 FLLECLADLDRQLKSHGG-----QLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (407)
Q Consensus 15 Fl~esL~~L~~~L~~~G~-----~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~ 62 (407)
...+.++.|++-+++.|. ...+..|+|.+.|.+.+++.+++-|++-..
T Consensus 63 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 63 LREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCC
Confidence 445677777777778775 466789999999999999999999887553
No 17
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=62.32 E-value=18 Score=28.72 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----EEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 14 RFLLECLADLDRQLKSHGGQ-----LFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 14 ~Fl~esL~~L~~~L~~~G~~-----L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
.-..+.|+.+.+.+++.|++ ..+..|+|.+.|.+.+++.+++-|++-.
T Consensus 66 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 118 (147)
T 3hgm_A 66 DYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGA 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeC
Confidence 34556778888888888864 5678899999999999999999887744
No 18
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=61.07 E-value=20 Score=28.47 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCC---cEEEEECChHHHHHH-HHHHhCCceEEEEe
Q psy6304 15 FLLECLADLDRQLKSHGG---QLFIVQGSPISIFQK-LKRELNFTKLCFEQ 61 (407)
Q Consensus 15 Fl~esL~~L~~~L~~~G~---~L~v~~G~~~~vl~~-L~~~~~i~~V~~~~ 61 (407)
-..+.|+.+.+.+.+.|+ ...+..|+|.+.|.+ .+++.+++-|++-.
T Consensus 66 ~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~ 116 (146)
T 3s3t_A 66 HAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGA 116 (146)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECC
Confidence 445667777777877777 567789999999999 99999999888754
No 19
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=58.41 E-value=13 Score=32.09 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
.....++=+.|++.|+++.|..|.+...+..+++.+|+..++.+.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~ 138 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATD 138 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcc
Confidence 455667777888999999999999999999999999998776554
No 20
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=57.85 E-value=20 Score=28.96 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCC---cEEEEE-CChHHHHHHH-HHHhCCceEEEEe
Q psy6304 15 FLLECLADLDRQLKSHGG---QLFIVQ-GSPISIFQKL-KRELNFTKLCFEQ 61 (407)
Q Consensus 15 Fl~esL~~L~~~L~~~G~---~L~v~~-G~~~~vl~~L-~~~~~i~~V~~~~ 61 (407)
-..+.|+.+.+.+.+.|+ ...+.. |+|.+.|.+. +++.+++-|++-.
T Consensus 76 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~ 127 (156)
T 3fg9_A 76 HVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGA 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECC
Confidence 455667777778888887 346778 9999999998 8999999887754
No 21
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=56.92 E-value=19 Score=29.63 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCcE----EEEECChHHHHHHHHHHhCCceEEEEee
Q psy6304 16 LLECLADLDRQLKSHGGQL----FIVQGSPISIFQKLKRELNFTKLCFEQD 62 (407)
Q Consensus 16 l~esL~~L~~~L~~~G~~L----~v~~G~~~~vl~~L~~~~~i~~V~~~~~ 62 (407)
..+.|+++.+.+...|+.. .+..|++.+.|.+.+++.+++-|++-..
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~ 126 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSR 126 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCC
Confidence 4456667777777677654 5678999999999999999999887543
No 22
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=56.67 E-value=25 Score=29.06 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCcE--EEEECChHHHHHHHHHHhCCceEEEEee
Q psy6304 17 LECLADLDRQLKSHGGQL--FIVQGSPISIFQKLKRELNFTKLCFEQD 62 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L--~v~~G~~~~vl~~L~~~~~i~~V~~~~~ 62 (407)
.+.|+.+.+.+.+.|+.. .+..|++.+.|.+.+++.+++-|++-..
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 133 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSR 133 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 345666666777778764 4678999999999999999999887653
No 23
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=56.58 E-value=29 Score=28.26 Aligned_cols=48 Identities=10% Similarity=-0.029 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEE----EECChHHHHHHHHHHhCCceEEEEe
Q psy6304 14 RFLLECLADLDRQLKSHGGQLFI----VQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 14 ~Fl~esL~~L~~~L~~~G~~L~v----~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
.-..+.|+++.+.+++.|+...+ ..|+|.+.|.+.+++.+++-|++-.
T Consensus 74 ~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 74 IEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECC
Confidence 34567788888888888988654 3499999999999999999988754
No 24
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=56.09 E-value=3.3 Score=32.78 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.4
Q ss_pred hccCCCCchhhhccccccCCC
Q psy6304 311 RRLDPDGIYIKRYVPELRQFP 331 (407)
Q Consensus 311 ~~~Dp~G~fIr~wvPEL~~lp 331 (407)
.+|||+|.|.+++--+++.++
T Consensus 88 ~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 88 AKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHCCCchHHHHHHHHHHHcc
Confidence 599999999999998888764
No 25
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=54.10 E-value=40 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCc---EEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 18 ECLADLDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 18 esL~~L~~~L~~~G~~---L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
+..+.|++-.+++|++ ..+..|+|.+.|.+.+++.+++-|++-.
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~ 117 (150)
T 3tnj_A 71 VEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGS 117 (150)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEec
Confidence 3334444444444554 7888999999999999999999988755
No 26
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=51.05 E-value=31 Score=26.94 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcCCc--EEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 15 FLLECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 15 Fl~esL~~L~~~L~~~G~~--L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
-..+.|+.+.+.+.+.|++ ..+..|+|.+.|.+.++ +++-|++-.
T Consensus 63 ~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~ 109 (138)
T 3idf_A 63 KAKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGS 109 (138)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeC
Confidence 3446677777788877877 66788999999999888 888887754
No 27
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=49.88 E-value=35 Score=26.79 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCc---EEEEECChHHHHHHHHHHhCCceEEEEee
Q psy6304 21 ADLDRQLKSHGGQ---LFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (407)
Q Consensus 21 ~~L~~~L~~~G~~---L~v~~G~~~~vl~~L~~~~~i~~V~~~~~ 62 (407)
+.|++-+++.|++ ..+..|+|.+.|.+.+++.+++-|++-..
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 3344444556765 46788999999999999999999887543
No 28
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=41.35 E-value=23 Score=30.03 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=31.5
Q ss_pred HHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEE
Q psy6304 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (407)
Q Consensus 23 L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~ 59 (407)
+=+.|++.|+++.|..|++...+..+++.+|+..++.
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~ 90 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQ 90 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhc
Confidence 3356778899999999999999999999999987654
No 29
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=37.62 E-value=70 Score=24.85 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=27.7
Q ss_pred cCC---cEEEEECChHHHHHHHHHHhCCceEEEEee
Q psy6304 30 HGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQD 62 (407)
Q Consensus 30 ~G~---~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~ 62 (407)
.|+ ...+..|+|.+.|.+.+++.+++-|++-..
T Consensus 73 ~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 73 TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTR 108 (137)
T ss_dssp HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESS
T ss_pred cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCC
Confidence 565 567889999999999999999999887543
No 30
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=37.43 E-value=34 Score=28.58 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHHhcCCcEEEEECChHHHHHHHHHHhCCc
Q psy6304 24 DRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (407)
Q Consensus 24 ~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~ 55 (407)
=+.|++.|+++.|..|++...+..+++.+++.
T Consensus 48 l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~ 79 (176)
T 3mmz_A 48 IAALRKSGLTMLILSTEQNPVVAARARKLKIP 79 (176)
T ss_dssp HHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC
T ss_pred HHHHHHCCCeEEEEECcChHHHHHHHHHcCCe
Confidence 35677889999999999999999999999998
No 31
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=37.42 E-value=28 Score=30.36 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEE
Q psy6304 23 LDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (407)
Q Consensus 23 L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~ 59 (407)
+=+.|++.|+++.|..|++...+..+++.+++..++.
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~ 120 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQ 120 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhc
Confidence 3456788899999999999999999999999987654
No 32
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=37.40 E-value=63 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCc--EEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 18 ECLADLDRQLKSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 18 esL~~L~~~L~~~G~~--L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
+.|+++.+.|++.|++ ..+..|++.+.|.+.+++.+++-|++-.
T Consensus 214 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~ 259 (294)
T 3loq_A 214 ADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGS 259 (294)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeC
Confidence 4567777777777766 4456688888888888888888776643
No 33
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=36.33 E-value=33 Score=27.87 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=30.0
Q ss_pred HHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEE
Q psy6304 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (407)
Q Consensus 25 ~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~ 59 (407)
+.|++.|+++.|..|.+......+++.+++..++.
T Consensus 41 ~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~ 75 (164)
T 3e8m_A 41 FWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQ 75 (164)
T ss_dssp HHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEEC
T ss_pred HHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeec
Confidence 55677899999999999999999999999986654
No 34
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=36.28 E-value=36 Score=28.39 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHhcCCcEEEEECChHHHHHHHHHHhCCceEE
Q psy6304 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (407)
Q Consensus 25 ~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~ 58 (407)
+.|++.|+++.+..|.+...+..+++.+++..++
T Consensus 45 ~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~ 78 (180)
T 1k1e_A 45 KMLMDADIQVAVLSGRDSPILRRRIADLGIKLFF 78 (180)
T ss_dssp HHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceee
Confidence 3456789999999999999999999999998765
No 35
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=35.60 E-value=32 Score=29.58 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.2
Q ss_pred HHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEE
Q psy6304 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (407)
Q Consensus 25 ~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~ 59 (407)
+.|++.|+++.|..|++...+..+++++|+..++.
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~ 96 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQ 96 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEEC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEee
Confidence 44677899999999999999999999999987653
No 36
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=35.03 E-value=28 Score=19.35 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhc
Q psy6304 15 FLLECLADLDRQLKSH 30 (407)
Q Consensus 15 Fl~esL~~L~~~L~~~ 30 (407)
=++.-|+||++.|+++
T Consensus 5 elykeledlqerlrkl 20 (27)
T 3twe_A 5 ELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3667788888888765
No 37
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=33.67 E-value=38 Score=28.78 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEE
Q psy6304 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (407)
Q Consensus 25 ~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~ 59 (407)
+.|++.|+++.|+.|++...+..+++.+++..++.
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~ 90 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYK 90 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEEC
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCcccee
Confidence 45677899999999999999999999999987543
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=33.10 E-value=84 Score=28.17 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCC---cEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 18 ECLADLDRQLKSHGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 18 esL~~L~~~L~~~G~---~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
+..+.|++-++++|+ ...+..|+|.+.|.+.+++.+++-|++-.
T Consensus 199 ~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~ 245 (290)
T 3mt0_A 199 RYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGT 245 (290)
T ss_dssp HHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECC
Confidence 334445555555576 47889999999999999999999887744
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=32.65 E-value=48 Score=25.84 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=30.7
Q ss_pred HHHHHHHHHH--HhcC-CcEEEEECChHHHHHHHHHHhCCceEEEE
Q psy6304 18 ECLADLDRQL--KSHG-GQLFIVQGSPISIFQKLKRELNFTKLCFE 60 (407)
Q Consensus 18 esL~~L~~~L--~~~G-~~L~v~~G~~~~vl~~L~~~~~i~~V~~~ 60 (407)
+.|+++ +.+ ...| ....+..|+|.+.|.+.+++.+++-|++-
T Consensus 72 ~~l~~~-~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 72 RRLREV-WEKLTGSTEIPGVEYRIGPLSEEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp HHHHHH-HHHHHSCCCCCCEEEECSCHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHH-HHHhhccCCcceEEEEcCCHHHHHHHHHHhcCCCEEEEe
Confidence 445555 443 3334 55678889999999999999999988764
No 40
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=31.12 E-value=86 Score=25.13 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCc
Q psy6304 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~ 55 (407)
+..|.+|.+++.+.|..++.+.-+..+.+.++++++++.
T Consensus 55 ~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 93 (163)
T 3gkn_A 55 GLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFA 93 (163)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 578899999999999999998888888999999988765
No 41
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=30.20 E-value=79 Score=25.37 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHhcCCcEEEEECChHHHHHHHHHHhCCceEE
Q psy6304 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (407)
Q Consensus 25 ~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~ 58 (407)
+.|++.|.++.+..|.+...+..+++.+++..++
T Consensus 46 ~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~ 79 (162)
T 2p9j_A 46 KLLQKMGITLAVISGRDSAPLITRLKELGVEEIY 79 (162)
T ss_dssp HHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEE
T ss_pred HHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhc
Confidence 4456789999999999999999999999988654
No 42
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=29.95 E-value=44 Score=28.11 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHhcCCcEEEEECChHHHHHHHHHHhCCceEE
Q psy6304 25 RQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (407)
Q Consensus 25 ~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~ 58 (407)
+.|++.|+++.|..|.+...+..+++.+++..++
T Consensus 63 ~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~ 96 (188)
T 2r8e_A 63 RCALTSDIEVAIITGRKAKLVEDRCATLGITHLY 96 (188)
T ss_dssp HHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHCCCeEEEEeCCChHHHHHHHHHcCCceee
Confidence 4567789999999999989999999999998654
No 43
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=29.14 E-value=34 Score=33.05 Aligned_cols=45 Identities=29% Similarity=0.351 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCC------ceEEEEe
Q psy6304 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF------TKLCFEQ 61 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i------~~V~~~~ 61 (407)
.....+|=+.|++.|++.+|+.|.+.+++..++++.|+ +.|+.++
T Consensus 223 ~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~ 273 (385)
T 4gxt_A 223 LDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLR 273 (385)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEEC
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeE
Confidence 46678899999999999999999999999999998664 4566554
No 44
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=29.03 E-value=1.2e+02 Score=27.41 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCC---cEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 15 FLLECLADLDRQLKSHGG---QLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 15 Fl~esL~~L~~~L~~~G~---~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
...+..+.|+.-++++|+ ...+..|+|.+.|.+.+++.+++-|++-.
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~ 274 (319)
T 3olq_A 225 LRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGI 274 (319)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEec
Confidence 334445555555677776 47889999999999999999999887744
No 45
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=27.74 E-value=12 Score=29.75 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.0
Q ss_pred hccCCCCchhhhccccccC
Q psy6304 311 RRLDPDGIYIKRYVPELRQ 329 (407)
Q Consensus 311 ~~~Dp~G~fIr~wvPEL~~ 329 (407)
.+|||+|.|.+++--+++.
T Consensus 86 ~KyDP~g~y~~~y~~~~~~ 104 (112)
T 1k19_A 86 AKYDPTGNWRKKYEDRAKA 104 (112)
T ss_dssp HSSTTTCSSHHHHHHHHHH
T ss_pred HHHCCCchHHHHHHHHHHH
Confidence 5999999999999877653
No 46
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=26.79 E-value=77 Score=29.40 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
...++=+.|++.|.++.|+.|.+...+..+++.+|+..++.+.
T Consensus 183 g~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 183 GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 4556667788899999999999999999999999998776544
No 47
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=26.43 E-value=90 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCc
Q psy6304 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~ 55 (407)
+..|.+|.+++++.|..++.+.-+..+.+.++++++++.
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~ 109 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFT 109 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCc
Confidence 467888999999999999888888888899999988775
No 48
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=25.64 E-value=65 Score=30.54 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeee
Q psy6304 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~ 63 (407)
.+.+..+++-|+.+|++.++..|++.+++..|++...+.. +...|.
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~-i~s~D~ 179 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYA-AATEDM 179 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSE-EECSCT
T ss_pred HHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEE-EEcCCc
Confidence 4567788899999999999999999999999988643333 334443
No 49
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=25.55 E-value=60 Score=31.20 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeee
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~ 63 (407)
.+..+++-|+.+|++.++..|++.+++..|++...+..|+ ..|.
T Consensus 136 ~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~ii-S~D~ 179 (379)
T 1ul1_X 136 HNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAA-TEDM 179 (379)
T ss_dssp CHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEE-CSCT
T ss_pred HHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEE-ecCc
Confidence 3567888889999999999999999999999885554343 3444
No 50
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=24.61 E-value=85 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCc
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT 55 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~ 55 (407)
+..++=+.|++.|++++++.|+...++..++++.|+.
T Consensus 145 g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~ 181 (297)
T 4fe3_A 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVY 181 (297)
T ss_dssp THHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence 3456777889999999999999999999999999875
No 51
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=24.44 E-value=63 Score=30.27 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeee
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~ 63 (407)
.+..+++-|+.+|++.++..|++.+++..|++. |....+...|.
T Consensus 131 ~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~-g~~~~I~S~D~ 174 (326)
T 1a76_A 131 MVENCKYLLSLMGIPYVEAPSEGEAQASYMAKK-GDVWAVVSQDY 174 (326)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT-TSSSEEECSSS
T ss_pred HHHHHHHHHHHcCCCeEECCccHHHHHHHHHHC-CCEEEEecCCc
Confidence 566788888899999999999999999999887 44334444443
No 52
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=26 Score=23.31 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCcEEEEECChHHHHHHH
Q psy6304 21 ADLDRQLKSHGGQLFIVQGSPISIFQKL 48 (407)
Q Consensus 21 ~~L~~~L~~~G~~L~v~~G~~~~vl~~L 48 (407)
.+|+..|+++|.|+ .|+-++.+..|
T Consensus 14 ~ELQaKLaE~GAPi---~g~REElvdRL 38 (58)
T 2do5_A 14 QELQAKLAEIGAPI---QGNREELVERL 38 (58)
T ss_dssp HHHHHHHHHHTCCC---CSCHHHHHHHH
T ss_pred HHHHHHHHHhCCcc---cccHHHHHHHH
Confidence 68999999999996 46666666655
No 53
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=23.83 E-value=77 Score=29.85 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeee
Q psy6304 17 LECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~ 63 (407)
.+-+..+++-|+.+|++.++..+++.+++..|++...+..| ...|.
T Consensus 129 ~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i-~S~D~ 174 (340)
T 1b43_A 129 EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYAS-ASQDY 174 (340)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEE-ECSSS
T ss_pred HHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEE-EccCC
Confidence 35567888899999999999999999999999987545544 44433
No 54
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=23.18 E-value=97 Score=28.66 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=38.6
Q ss_pred HHHHHH-HHHHHHHHHh--cCCcEEEEEC-ChHHHHHHHHHHh---CCceEEEEeee
Q psy6304 14 RFLLEC-LADLDRQLKS--HGGQLFIVQG-SPISIFQKLKREL---NFTKLCFEQDC 63 (407)
Q Consensus 14 ~Fl~es-L~~L~~~L~~--~G~~L~v~~G-~~~~vl~~L~~~~---~i~~V~~~~~~ 63 (407)
.-|.+. +..+++-|+. +|++.+...| ++.+++..|+++. |...++++.|.
T Consensus 97 e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~Dk 153 (290)
T 1exn_A 97 KALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDG 153 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCG
T ss_pred hhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 334556 7778888999 9999999999 9999999999875 45555555554
No 55
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=22.62 E-value=70 Score=30.59 Aligned_cols=43 Identities=12% Similarity=0.011 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeee
Q psy6304 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (407)
Q Consensus 20 L~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~ 63 (407)
+..+++-|+.+|++.++..|++.+++..|++. |....++..|.
T Consensus 146 ~~~i~~lL~~~GIp~i~apgEADaqiA~La~~-g~~~~I~S~D~ 188 (363)
T 3ory_A 146 VRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKK-GDAYASASQDY 188 (363)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT-TSCSEEECSSS
T ss_pred HHHHHHHHHHCCCCEEEeCccHHHHHHHHHHC-CCeEEEECCCc
Confidence 77888899999999999999999999988764 54444444444
No 56
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=22.38 E-value=1.2e+02 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEE
Q psy6304 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (407)
Q Consensus 20 L~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~ 58 (407)
..++=+.|++.|+++.|..|++...+..+++..++...+
T Consensus 149 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f 187 (280)
T 3skx_A 149 SREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYF 187 (280)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChhHh
Confidence 444556677889999999999999999999999987554
No 57
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=21.68 E-value=67 Score=33.23 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 22 ~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
+.=+.|++.|+++.+..|++......++++.|++.++.+.
T Consensus 464 ~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~ 503 (645)
T 3j08_A 464 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV 503 (645)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSC
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeC
Confidence 3445678889999999999999999999999998776533
No 58
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=21.67 E-value=1.2e+02 Score=25.13 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEE
Q psy6304 20 LADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCF 59 (407)
Q Consensus 20 L~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~ 59 (407)
+.++=+.|++.|.++.++.+.+...+..+++.+++..++.
T Consensus 80 ~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~ 119 (217)
T 3m1y_A 80 ALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFS 119 (217)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhcc
Confidence 4555567788999999999999999999999999987654
No 59
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.62 E-value=76 Score=29.99 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeee
Q psy6304 18 ECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63 (407)
Q Consensus 18 esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~ 63 (407)
+.+..+++-|+.+|++.++..|++.+++..|++. |....+...|.
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~-g~~~~I~S~D~ 171 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKL-GLSWAAASQDY 171 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT-TSSSEEECSSS
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhC-CCeEEEECCCC
Confidence 5677888889999999999999999999999875 54444454544
No 60
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=21.23 E-value=1.1e+02 Score=29.37 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
...++=+.|++.|.++.|+.|.+...+..+++.+|+..++.+.
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~ 302 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANE 302 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEEC
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeee
Confidence 4556677888899999999999999999999999998877654
No 61
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=20.89 E-value=1.4e+02 Score=27.47 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEe
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQ 61 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~ 61 (407)
...++=+.|++.|.++.|+.|.+...+..+++.+++..++.+.
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~ 224 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNT 224 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEeee
Confidence 3445667788899999999999999999999999998876554
No 62
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=20.79 E-value=1.4e+02 Score=24.53 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCc--eEEE
Q psy6304 19 CLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFT--KLCF 59 (407)
Q Consensus 19 sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~--~V~~ 59 (407)
...++=+.|++.|.++.|..+.+...+..+++.+++. .++.
T Consensus 86 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~ 128 (219)
T 3kd3_A 86 GIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIFA 128 (219)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEEE
T ss_pred hHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEEE
Confidence 3556667788899999999999999999999999984 3444
No 63
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=20.70 E-value=1.3e+02 Score=24.20 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCc-EEEEECChHHHHHHHHHHhCC
Q psy6304 17 LECLADLDRQLKSHGGQ-LFIVQGSPISIFQKLKRELNF 54 (407)
Q Consensus 17 ~esL~~L~~~L~~~G~~-L~v~~G~~~~vl~~L~~~~~i 54 (407)
...|.++.+++++.|+. ++.+.-+..+.+.++++++++
T Consensus 56 ~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 56 VPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 35688888889889999 888887777888899998887
No 64
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=20.24 E-value=1.5e+02 Score=23.91 Aligned_cols=43 Identities=2% Similarity=-0.020 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEECChH---------------HHHHHHHHHhC--CceEEEE
Q psy6304 18 ECLADLDRQLKSHGGQLFIVQGSPI---------------SIFQKLKRELN--FTKLCFE 60 (407)
Q Consensus 18 esL~~L~~~L~~~G~~L~v~~G~~~---------------~vl~~L~~~~~--i~~V~~~ 60 (407)
.+..++=+.|++.|.++.|..+.+. +.+..+++.++ ++.++..
T Consensus 30 ~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 89 (179)
T 3l8h_A 30 PGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMC 89 (179)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEEc
Confidence 3444555667888999999998774 56677778888 7776643
No 65
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=20.22 E-value=1.3e+02 Score=27.05 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEE
Q psy6304 22 DLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLC 58 (407)
Q Consensus 22 ~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~ 58 (407)
++=+.|++.|+++.|..|++...+..+++.+|+..++
T Consensus 170 ~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f 206 (287)
T 3a1c_A 170 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVI 206 (287)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCceee
Confidence 4445677889999999999888888888888887554
No 66
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.17 E-value=51 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.097 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCC
Q psy6304 16 LLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNF 54 (407)
Q Consensus 16 l~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i 54 (407)
+...+.++=+.|++.|.++.+..+.+...+..+++.+++
T Consensus 19 ~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l 57 (137)
T 2pr7_A 19 DQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELET 57 (137)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHH
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCCh
Confidence 445566666778888999999998776666666666554
Done!