RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6304
(407 letters)
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 279
Score = 92.7 bits (229), Expect = 6e-22
Identities = 46/272 (16%), Positives = 79/272 (29%), Gaps = 57/272 (20%)
Query: 147 IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRR 205
+ + GGET L RL + + +S+ S L GCLS R
Sbjct: 6 LAFQGGETAGL----ARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRF 61
Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW--- 262
Y + + +L+WR++F ++ + N PW
Sbjct: 62 IYQEVKRYEQERVSNDSTHWL--IFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQED 119
Query: 263 -----LPESHPNKEKYLNAWKN--GQTGY------------------------------- 284
L S ++A TG+
Sbjct: 120 QVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESC 179
Query: 285 -----PFIDAVMR----QLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
+ + ++ DP G Y++ ++PEL+ P I
Sbjct: 180 LIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKI 239
Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
++PW Q++ + DYP VN Q+
Sbjct: 240 HQPWLLSATEQKQWGVQLGVDYPRPCVNFHQS 271
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 91.5 bits (226), Expect = 2e-21
Identities = 51/285 (17%), Positives = 90/285 (31%), Gaps = 63/285 (22%)
Query: 149 WLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFY 207
W G + L ++ + Y N+ D TS S L FG +SVR+ +
Sbjct: 16 WSPGWSNGDKALTTFINGPLLE-----YSKNRRKADSAT--TSFLSPHLHFGEVSVRKVF 68
Query: 208 WALHDHFNTI----HEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIP-- 261
+ +E S + REY +S ++PY + P
Sbjct: 69 HLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWA 128
Query: 262 ---------------WLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR----------- 295
+ +E + W + + ++ L+
Sbjct: 129 VDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFW 188
Query: 296 -----------------------RLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPI 332
+ P G + DP+G Y++R++PEL + P
Sbjct: 189 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPT 248
Query: 333 QYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
+I+ PW AP V + A + +YP IV +A + L +
Sbjct: 249 DWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQ 293
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 79.2 bits (194), Expect = 2e-17
Identities = 49/280 (17%), Positives = 89/280 (31%), Gaps = 64/280 (22%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
E A+ +L + Y + P + G TS+ SA+L G LS R+
Sbjct: 2 VEEKAAIAQLRQFCQNGAGE-----YEQQRDFPAVEG--TSRLSASLATGGLSPRQCLHR 54
Query: 210 LHDHFNTIHEGRPP-----SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
L +G Y ++ H P+ ++ N L
Sbjct: 55 LLAEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQ 114
Query: 265 ESHPNK--EKYLNAWKN--GQTGY-------------------PFIDAVMRQLRRLLD-- 299
K ++A TG+ + + + +L+D
Sbjct: 115 AWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGD 174
Query: 300 --------------------CTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPW 339
P G + D +G +I++++PELR P + ++EPW
Sbjct: 175 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPW 234
Query: 340 KAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK 379
K ++ DYP+ IV H +A ++ + +
Sbjct: 235 KWA------QKAGVTLDYPQPIVEHKEARVQTLAAYEAAR 268
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
{Synechococcus elongatus [TaxId: 32046]}
Length = 271
Score = 77.0 bits (188), Expect = 2e-16
Identities = 51/282 (18%), Positives = 80/282 (28%), Gaps = 68/282 (24%)
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
GET A+ +L E + I + + P G TS S ALKFG + +R+ + A
Sbjct: 4 PGETAAIARLQEFCDRAIADYDP-----QRNFPAEAG--TSGLSPALKFGAIGIRQAWQA 56
Query: 210 LHDHFNT-IHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHP 268
+ S +L WRE++ H P + PW
Sbjct: 57 ASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREAL 116
Query: 269 NKEKY-----------------------------------LNAWKNGQTGYPFIDAVMRQ 293
+ + + G F +
Sbjct: 117 FTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVD 176
Query: 294 LRRLLD---------------CTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEP 338
+ P + ++ D YIKR++PELR + +
Sbjct: 177 GDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISG 236
Query: 339 WKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKA 380
P I + YP IVNH + K + KA
Sbjct: 237 EITP---------IERRGYPAPIVNHNLRQKQFKALYNQLKA 269
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 53.0 bits (126), Expect = 1e-08
Identities = 49/237 (20%), Positives = 69/237 (29%), Gaps = 76/237 (32%)
Query: 152 GETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWAL 210
GE AL L L ++ + L G S+ S G LS R W
Sbjct: 7 GEEAALAGLRAFLEAKLPRYAEE-------RDRLDGEGGSRLSPYFALGVLSPRLAAWEA 59
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
+L+WR++ Y + H P+ + +P PW
Sbjct: 60 ERRGGEGARKWV-------AELLWRDFSYHLLYHFPWMAERPLDPRFQAFPW-----QED 107
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQ---------------------------------LRRL 297
E AW G+TG P +DA MR+ R L
Sbjct: 108 EALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHL 167
Query: 298 LDCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELRQFP 331
L PV G R DP+G ++KR+ PE +
Sbjct: 168 LLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA 224
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 31.6 bits (70), Expect = 0.11
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 10/157 (6%)
Query: 225 HFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGY 284
L+ + +S+ + + I E + A
Sbjct: 34 GGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEES 93
Query: 285 PFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFP-IQYIYEPWKAPL 343
+ P+ + D GIY E++ F + YE
Sbjct: 94 RKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETP---- 149
Query: 344 GVQEKANCII--SKDYPERIVNHVQASLENKQYLKKE 378
EKA+ ++ SK IV+ + LE++ +L+++
Sbjct: 150 ---EKADLVVDFSKQSVRSIVHEIILVLESQGFLERQ 183
>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 27.8 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 8 IGYNRFRFLLECLADLDRQL--KSHGGQ--LFIVQGSPISIFQKLKRELNFTKLCFE 60
I N R + + L DL + ++ GQ L +V P QKL RE N K F+
Sbjct: 30 ITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFK 86
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific
adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 59
Score = 25.6 bits (56), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 358 PERIVNHVQASLENKQYLKKE 378
P++ +N V SL K L+KE
Sbjct: 29 PKKEINRVLYSLAKKGKLQKE 49
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 27.1 bits (59), Expect = 3.2
Identities = 10/94 (10%), Positives = 22/94 (23%)
Query: 200 CLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLN 259
+ + H + + G + E A ++
Sbjct: 112 AIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGIS 171
Query: 260 IPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQ 293
IP + + + G G I A+ +
Sbjct: 172 IPIVGIGGITIDNAAPVIQAGADGVSMISAISQA 205
>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 95
Score = 25.8 bits (55), Expect = 4.1
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 187 GPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHN 245
+ L G + R + ++F EG F I Y + + + +
Sbjct: 28 SLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFS 86
>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 26.4 bits (57), Expect = 4.3
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 238 FYT-MSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRR 296
FY + + + L WL S + A R +
Sbjct: 21 FYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPAADYTHYAFGIAAADFARFAAQ 80
Query: 297 LLDCTYCVC--PVNFGRRL---DPDGIYIKRYVPELRQFPIQYIYEPWK 340
L + G DPDG ++ +V +LR P+
Sbjct: 81 LRAHGVREWKQNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYA 129
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
oxidase HemN {Escherichia coli [TaxId: 562]}
Length = 441
Score = 26.1 bits (56), Expect = 7.7
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 300 CTYCVCPVNFGRRLDPDGIYIKRYVPELRQ 329
C +C C R+ Y+ E+
Sbjct: 63 CYFCGCNKIVTRQQHKADQYLDALEQEIVH 92
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 382
Score = 26.2 bits (56), Expect = 8.8
Identities = 13/129 (10%), Positives = 30/129 (23%)
Query: 211 HDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNK 270
H + + W + +P L HP+
Sbjct: 122 HSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDV 181
Query: 271 EKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQF 330
++YL ID + + + ++ +PD + E +
Sbjct: 182 KEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSIW 241
Query: 331 PIQYIYEPW 339
++
Sbjct: 242 LEGDQFDAV 250
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.444
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,667,094
Number of extensions: 83661
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 24
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)