BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6305
(52 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 30/42 (71%), Gaps = 7/42 (16%)
Query: 16 WFRHGLRLHDNPALFEASLNS-------VLYPVFIFDGETAG 50
WFRHGLRLHDNP+L EA N LYP+FIFDGE+AG
Sbjct: 8 WFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAG 49
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 9/44 (20%)
Query: 16 WFRHGLRLHDNPALFEA--------SLNSV-LYPVFIFDGETAG 50
WFRHGLRLHDNP+L EA S +V L+P+FIFDGE+AG
Sbjct: 8 WFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAG 51
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 14 VHWFRHGLRLHDNPALFEASLNS----VLYPVFIFDGETAG 50
V WFRHGLRLHDNPAL A + L PVFIFDGE+AG
Sbjct: 8 VIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAG 48
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Query: 14 VHWFRHGLRLHDNPALF----EASLNSVLYPVFIFDGETAG 50
V WFRHGLRLHDNPAL E L PVFIFDGE+AG
Sbjct: 8 VLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAG 48
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 16 WFRHGLRLHDNPALFEASLNS-VLYPVFIFD 45
WFR GLR+HDNPAL AS S +YPVF+ D
Sbjct: 29 WFRKGLRVHDNPALEYASKGSEFMYPVFVID 59
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAG 43
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAG 43
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAG 43
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAG 43
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAG 43
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAG 43
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAG 43
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETAG 50
AVHWFR GLRLHDNPAL E + + V+I D AG
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAG 43
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 9 NKEVAVHWFRHGLRLHDNPALFEASLNSVLYPVFIFDGETAGLF 52
NK+ V WFR LR+ DNPAL A+ ++PVFI+ E G F
Sbjct: 4 NKKTIV-WFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQF 46
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 13 AVHWFRHGLRLHDNPALFEA 32
+VHWFR GLRLHDNPAL A
Sbjct: 23 SVHWFRKGLRLHDNPALLAA 42
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 13 AVHWFRHGLRLHDNPALFEA 32
+VHWFR GLRLHDNPAL A
Sbjct: 23 SVHWFRKGLRLHDNPALLAA 42
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 13 AVHWFRHGLRLHDNPALFEA 32
+VHWFR GLRLHDNPAL A
Sbjct: 24 SVHWFRKGLRLHDNPALLAA 43
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 13 AVHWFRHGLRLHDNPALFEASLNSV--LYPVFIFD 45
+VHWFR GLRLHDNPAL +A+L L ++I D
Sbjct: 14 SVHWFRRGLRLHDNPAL-QAALRGAASLRCIYILD 47
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 16 WFRHGLRLHDNPALFEASLNSVLYPVFIFDGETAGLF 52
WFR LR+ DNPAL A+ ++PVFI+ E G F
Sbjct: 10 WFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQF 46
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 16 WFRHGLRLHDNPAL---FEASLNSVLYPVFIFD 45
WFR GLR+HDNPAL + LYPVF+ D
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYPVFVLD 50
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=cry PE=3 SV=1
Length = 474
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 11 EVAVHWFRHGLRLHDNPALFEA-SLNSVLYPVFIFD 45
+ AV WFR LR+ DNP L +A + + PV+ FD
Sbjct: 2 DTAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFD 37
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 8 NNKEVAVHWFRHGLRLHDNPALFEA-SLNSVLYPVFIFD 45
K V + WFR+ LR+ DN AL++A S + + PV+ D
Sbjct: 81 KGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLD 119
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 10 KEVAVHWFRHGLRLHDNPALFEASLNS 36
++ VHWF+ LRLHDN +L+ AS +
Sbjct: 134 RQAVVHWFKMDLRLHDNRSLWLASQKA 160
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 12 VAVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFD 45
VA+ WFR+ LR+ DN AL A ++S + PV+ D
Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVD 113
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 16 WFRHGLRLHDNPALFEASLNSV-LYPVFIFD 45
WFR+ LR+HDN L A+ V + PV+ FD
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFD 150
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 6 SPNNKEVAVHWFRHGLRLHDNPALFEA 32
S N +HWFR+ LRL+DN L+++
Sbjct: 70 SFENVSTVMHWFRNDLRLYDNVGLYKS 96
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain
K12) GN=phrB PE=1 SV=1
Length = 472
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 16 WFRHGLRLHDNPALFEASLNS 36
WFR LRLHDN AL A NS
Sbjct: 7 WFRQDLRLHDNLALAAACRNS 27
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 10 KEVAVHWFRHGLRLHDNPALFEAS 33
K++ ++WF LRLHDN L +AS
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDAS 26
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 14 VHWFRHGLRLHDNPALFEASLNSVLYPVFIFDGETAGLF 52
+ WFR LR+ DNPAL A + +F++ E G +
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHY 53
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 9 NKEVAVHWFRHGLRLHDNPALFEAS 33
+K++ ++WF + LR++DNP L +AS
Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQAS 26
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 12 VAVHWFRHGLRLHDNPALFEA-SLNSVLYPVFIFD 45
VA+ WFR+ LR+ DN A+ A + + + PV+ D
Sbjct: 85 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVD 119
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 16 WFRHGLRLHDNPALFEASLNSVLYPVFIFD 45
W R LRLHD+PAL EA + + + D
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVGLVVLD 36
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 16 WFRHGLRLHDNPALFEASLNSVLYPVFIFD 45
W R LRLHD+PAL EA + + + D
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVGLVVLD 36
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,834,513
Number of Sequences: 539616
Number of extensions: 579998
Number of successful extensions: 1250
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 33
length of query: 52
length of database: 191,569,459
effective HSP length: 25
effective length of query: 27
effective length of database: 178,079,059
effective search space: 4808134593
effective search space used: 4808134593
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)