Query psy6305
Match_columns 52
No_of_seqs 129 out of 1012
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:00:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 99.6 2.6E-16 8.9E-21 111.6 4.5 40 11-50 5-45 (537)
2 1u3d_A Cryptochrome 1 apoprote 99.5 3.3E-15 1.1E-19 104.2 4.8 50 1-50 1-51 (509)
3 3umv_A Deoxyribodipyrimidine p 99.5 5.2E-15 1.8E-19 104.3 5.2 40 9-48 36-80 (506)
4 3tvs_A Cryptochrome-1; circadi 99.5 3.2E-15 1.1E-19 105.8 4.1 42 9-50 2-47 (538)
5 2j4d_A Cryptochrome 3, cryptoc 99.5 2.3E-14 7.9E-19 100.6 7.0 41 10-50 39-80 (525)
6 1np7_A DNA photolyase; protein 99.5 1.6E-14 5.4E-19 100.2 6.1 43 8-50 3-46 (489)
7 2e0i_A 432AA long hypothetical 99.5 5.7E-15 1.9E-19 102.3 3.6 38 13-50 3-41 (440)
8 1dnp_A DNA photolyase; DNA rep 99.5 5.7E-15 1.9E-19 102.6 2.9 38 12-49 2-41 (471)
9 2wq7_A RE11660P; lyase-DNA com 99.4 1.1E-13 3.7E-18 97.5 4.3 42 9-50 27-75 (543)
10 1owl_A Photolyase, deoxyribodi 99.4 1.2E-13 4.2E-18 95.9 3.7 39 11-49 3-42 (484)
11 2j07_A Deoxyribodipyrimidine p 99.4 2.6E-13 8.9E-18 93.0 4.1 38 12-49 3-40 (420)
12 2xry_A Deoxyribodipyrimidine p 99.4 7.9E-13 2.7E-17 91.4 6.5 39 11-49 37-80 (482)
13 2ec4_A FAS-associated factor 1 27.1 46 0.0016 19.9 2.5 21 27-47 42-66 (178)
14 4gjt_B Poliovirus receptor-rel 26.8 49 0.0017 17.5 2.3 10 11-20 32-41 (123)
15 1he7_A High affinity nerve gro 26.6 17 0.00058 20.7 0.4 17 11-27 29-45 (126)
16 3mxt_A Pantothenate synthetase 24.7 43 0.0015 22.3 2.1 24 26-50 40-65 (285)
17 2v3g_A Endoglucanase H; beta-1 24.3 78 0.0027 20.2 3.3 24 11-34 250-277 (283)
18 4fmk_A Poliovirus receptor-rel 23.8 47 0.0016 18.0 2.0 11 12-22 34-44 (225)
19 4gos_A V-SET domain-containing 23.7 39 0.0013 18.2 1.6 10 11-20 37-46 (125)
20 2oyp_A Hepatitis A virus cellu 23.5 61 0.0021 16.0 2.2 11 11-21 26-36 (109)
21 1wit_A Twitchin 18TH IGSF modu 21.9 78 0.0027 15.4 2.5 15 11-25 31-47 (93)
22 3noi_A Natural cytotoxicity tr 20.1 88 0.003 16.3 2.5 10 11-20 40-49 (120)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=99.62 E-value=2.6e-16 Score=111.57 Aligned_cols=40 Identities=50% Similarity=0.826 Sum_probs=36.7
Q ss_pred ceEEEEecCCCCccChHHHHHHHhCCC-eEEEEEeCCCccc
Q psy6305 11 EVAVHWFRHGLRLHDNPALFEASLNSV-LYPVFIFDGETAG 50 (52)
Q Consensus 11 ~~~l~WfR~DLRl~DN~aL~~A~~~~~-vi~vyi~dp~~~~ 50 (52)
+++|+|||||||++|||||.+|++.+. |+||||+||.+++
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~ 45 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYME 45 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHS
T ss_pred CcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhc
Confidence 678999999999999999999998876 9999999998754
No 2
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=99.55 E-value=3.3e-15 Score=104.16 Aligned_cols=50 Identities=32% Similarity=0.563 Sum_probs=35.6
Q ss_pred CCCCCCC-CCCceEEEEecCCCCccChHHHHHHHhCCCeEEEEEeCCCccc
Q psy6305 1 MDTPNSP-NNKEVAVHWFRHGLRLHDNPALFEASLNSVLYPVFIFDGETAG 50 (52)
Q Consensus 1 ~~~~~~~-~~~~~~l~WfR~DLRl~DN~aL~~A~~~~~vi~vyi~dp~~~~ 50 (52)
||.+-+. ..++.+|+|||+|||++||+||.+|++.+.++||||+||.++.
T Consensus 1 ~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~ 51 (509)
T 1u3d_A 1 MSGSVSGCGSGGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEG 51 (509)
T ss_dssp ------------CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGT
T ss_pred CCCccCCCCCCCcEEEEECCCCccchhHHHHHHHhCCCEEEEEEECchhcc
Confidence 4555443 3456789999999999999999999987569999999998764
No 3
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=99.54 E-value=5.2e-15 Score=104.25 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCceEEEEecCCCCccChHHHHHHHh----CC-CeEEEEEeCCCc
Q psy6305 9 NKEVAVHWFRHGLRLHDNPALFEASL----NS-VLYPVFIFDGET 48 (52)
Q Consensus 9 ~~~~~l~WfR~DLRl~DN~aL~~A~~----~~-~vi~vyi~dp~~ 48 (52)
+++.+|+|||+|||++|||||.+|++ .+ .|+||||+||.+
T Consensus 36 ~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~ 80 (506)
T 3umv_A 36 PGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRP 80 (506)
T ss_dssp TTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTT
T ss_pred CCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchh
Confidence 45678999999999999999999996 23 499999999984
No 4
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=99.54 E-value=3.2e-15 Score=105.81 Aligned_cols=42 Identities=64% Similarity=1.144 Sum_probs=36.7
Q ss_pred CCceEEEEecCCCCccChHHHHHHHhCC----CeEEEEEeCCCccc
Q psy6305 9 NKEVAVHWFRHGLRLHDNPALFEASLNS----VLYPVFIFDGETAG 50 (52)
Q Consensus 9 ~~~~~l~WfR~DLRl~DN~aL~~A~~~~----~vi~vyi~dp~~~~ 50 (52)
.++.+|+|||+|||++|||||.+|++.+ .|+||||+||.+++
T Consensus 2 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~ 47 (538)
T 3tvs_A 2 TRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAG 47 (538)
T ss_dssp CSCEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSC
T ss_pred CCCcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhc
Confidence 3567899999999999999999998754 49999999998864
No 5
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=99.52 E-value=2.3e-14 Score=100.60 Aligned_cols=41 Identities=39% Similarity=0.646 Sum_probs=36.7
Q ss_pred CceEEEEecCCCCccChHHHHHHHhCCC-eEEEEEeCCCccc
Q psy6305 10 KEVAVHWFRHGLRLHDNPALFEASLNSV-LYPVFIFDGETAG 50 (52)
Q Consensus 10 ~~~~l~WfR~DLRl~DN~aL~~A~~~~~-vi~vyi~dp~~~~ 50 (52)
++.+|+|||+|||++||+||.+|++.+. |+||||+||.++.
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~ 80 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFH 80 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGS
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhc
Confidence 3568999999999999999999998776 9999999998754
No 6
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=99.52 E-value=1.6e-14 Score=100.20 Aligned_cols=43 Identities=28% Similarity=0.546 Sum_probs=37.9
Q ss_pred CCCceEEEEecCCCCccChHHHHHHHhCCC-eEEEEEeCCCccc
Q psy6305 8 NNKEVAVHWFRHGLRLHDNPALFEASLNSV-LYPVFIFDGETAG 50 (52)
Q Consensus 8 ~~~~~~l~WfR~DLRl~DN~aL~~A~~~~~-vi~vyi~dp~~~~ 50 (52)
|.++.+|+|||+|||++||+||.+|++.+. ++||||+||.++.
T Consensus 3 m~~~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~ 46 (489)
T 1np7_A 3 HVPPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFA 46 (489)
T ss_dssp CCCCEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGS
T ss_pred CCCCcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhc
Confidence 344678999999999999999999998876 9999999998764
No 7
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=99.51 E-value=5.7e-15 Score=102.28 Aligned_cols=38 Identities=37% Similarity=0.434 Sum_probs=34.6
Q ss_pred EEEEecCCCCccChHHHHHHHhCCC-eEEEEEeCCCccc
Q psy6305 13 AVHWFRHGLRLHDNPALFEASLNSV-LYPVFIFDGETAG 50 (52)
Q Consensus 13 ~l~WfR~DLRl~DN~aL~~A~~~~~-vi~vyi~dp~~~~ 50 (52)
+|+|||+|||++|||||.+|++.+. |+||||+||++++
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~ 41 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLI 41 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHS
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhc
Confidence 6999999999999999999998665 9999999998754
No 8
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=99.50 E-value=5.7e-15 Score=102.61 Aligned_cols=38 Identities=37% Similarity=0.565 Sum_probs=33.9
Q ss_pred eEEEEecCCCCccChHHHHHHHhC--CCeEEEEEeCCCcc
Q psy6305 12 VAVHWFRHGLRLHDNPALFEASLN--SVLYPVFIFDGETA 49 (52)
Q Consensus 12 ~~l~WfR~DLRl~DN~aL~~A~~~--~~vi~vyi~dp~~~ 49 (52)
++|+|||+|||++|||||.+|++. +.|+||||+||.++
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~ 41 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQW 41 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHH
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhh
Confidence 479999999999999999999983 34999999999865
No 9
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=99.42 E-value=1.1e-13 Score=97.53 Aligned_cols=42 Identities=45% Similarity=0.825 Sum_probs=35.0
Q ss_pred CCceEEEEecCCCCccChHHHHHHHhCC-C------eEEEEEeCCCccc
Q psy6305 9 NKEVAVHWFRHGLRLHDNPALFEASLNS-V------LYPVFIFDGETAG 50 (52)
Q Consensus 9 ~~~~~l~WfR~DLRl~DN~aL~~A~~~~-~------vi~vyi~dp~~~~ 50 (52)
.+..+|+|||+|||++||+||.+|++.+ . |++|||+||.+++
T Consensus 27 ~~~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~ 75 (543)
T 2wq7_A 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILD 75 (543)
T ss_dssp TCEEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGG
T ss_pred cCceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhc
Confidence 3344599999999999999999997643 2 9999999998764
No 10
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=99.40 E-value=1.2e-13 Score=95.92 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=34.4
Q ss_pred ceEEEEecCCCCccChHHHHHHHhCC-CeEEEEEeCCCcc
Q psy6305 11 EVAVHWFRHGLRLHDNPALFEASLNS-VLYPVFIFDGETA 49 (52)
Q Consensus 11 ~~~l~WfR~DLRl~DN~aL~~A~~~~-~vi~vyi~dp~~~ 49 (52)
..+|+|||+|||++||+||.+|++.+ .|++|||+||.++
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~ 42 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQIL 42 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHH
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhh
Confidence 45799999999999999999999733 4999999999865
No 11
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=99.38 E-value=2.6e-13 Score=93.04 Aligned_cols=38 Identities=34% Similarity=0.579 Sum_probs=34.1
Q ss_pred eEEEEecCCCCccChHHHHHHHhCCCeEEEEEeCCCcc
Q psy6305 12 VAVHWFRHGLRLHDNPALFEASLNSVLYPVFIFDGETA 49 (52)
Q Consensus 12 ~~l~WfR~DLRl~DN~aL~~A~~~~~vi~vyi~dp~~~ 49 (52)
.+|+|||+|||++||+||.+|++.+.|++|||+||.++
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~~v~~vfi~d~~~~ 40 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNL 40 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHH
T ss_pred eEEEEeCCCCCccccHHHHHHHhCCCEEEEEEECCccc
Confidence 57999999999999999999987657999999998754
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=99.38 E-value=7.9e-13 Score=91.42 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=34.2
Q ss_pred ceEEEEecCCCCccChHHHHHHHhC----C-CeEEEEEeCCCcc
Q psy6305 11 EVAVHWFRHGLRLHDNPALFEASLN----S-VLYPVFIFDGETA 49 (52)
Q Consensus 11 ~~~l~WfR~DLRl~DN~aL~~A~~~----~-~vi~vyi~dp~~~ 49 (52)
..+|+|||+|||++||+||.+|++. + .|++|||+||.+.
T Consensus 37 g~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~ 80 (482)
T 2xry_A 37 GPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFL 80 (482)
T ss_dssp SCEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGG
T ss_pred CcEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhh
Confidence 3789999999999999999999852 3 4999999999865
No 13
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.15 E-value=46 Score=19.94 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=15.1
Q ss_pred HHHHHH----HhCCCeEEEEEeCCC
Q psy6305 27 PALFEA----SLNSVLYPVFIFDGE 47 (52)
Q Consensus 27 ~aL~~A----~~~~~vi~vyi~dp~ 47 (52)
.||..| -++...+.||+.+++
T Consensus 42 ~Al~~A~~~~k~e~K~LlVyLhs~~ 66 (178)
T 2ec4_A 42 AAFQEAFYVKARDRKLLAIYLHHDE 66 (178)
T ss_dssp HHHHTTTSSCTTTCCEEEEEEECSS
T ss_pred HHHHHHHhhhhhhCcEEEEEEeCCC
Confidence 467777 333349999999886
No 14
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=26.78 E-value=49 Score=17.51 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=7.3
Q ss_pred ceEEEEecCC
Q psy6305 11 EVAVHWFRHG 20 (52)
Q Consensus 11 ~~~l~WfR~D 20 (52)
...+.|+|.+
T Consensus 32 ~~~V~W~k~~ 41 (123)
T 4gjt_B 32 VGQVAWARVD 41 (123)
T ss_dssp EEEEEEEECC
T ss_pred eeEEEEEEcC
Confidence 3568899865
No 15
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=26.58 E-value=17 Score=20.74 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=12.9
Q ss_pred ceEEEEecCCCCccChH
Q psy6305 11 EVAVHWFRHGLRLHDNP 27 (52)
Q Consensus 11 ~~~l~WfR~DLRl~DN~ 27 (52)
...|.||+++-.|..++
T Consensus 29 ~P~I~W~knG~~l~~~~ 45 (126)
T 1he7_A 29 APSLRWLFNGSVLNETS 45 (126)
T ss_dssp CCEEEEEETTEECCCCS
T ss_pred CCeEEEEECCEECCCCC
Confidence 45799999997776643
No 16
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=24.74 E-value=43 Score=22.32 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=15.2
Q ss_pred hHHHHHHHhCCC--eEEEEEeCCCccc
Q psy6305 26 NPALFEASLNSV--LYPVFIFDGETAG 50 (52)
Q Consensus 26 N~aL~~A~~~~~--vi~vyi~dp~~~~ 50 (52)
|-+|.++++.++ |+.+|| +|-|++
T Consensus 40 HlsLv~~Ar~~d~VVVSIFV-NP~QF~ 65 (285)
T 3mxt_A 40 HLSLVKHAKTQDKVIVSIFV-NPMQFG 65 (285)
T ss_dssp HHHHHHHHTTSSEEEEEECC-CGGGCC
T ss_pred HHHHHHHHHhCCEEEEEecc-CccccC
Confidence 566777665555 566776 676654
No 17
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*
Probab=24.32 E-value=78 Score=20.18 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=19.6
Q ss_pred ceEEEEec----CCCCccChHHHHHHHh
Q psy6305 11 EVAVHWFR----HGLRLHDNPALFEASL 34 (52)
Q Consensus 11 ~~~l~WfR----~DLRl~DN~aL~~A~~ 34 (52)
-..++||- .|.|+.+||+..+|-+
T Consensus 250 ~~~~~wfn~~~~~dwr~~~~p~~~~a~~ 277 (283)
T 2v3g_A 250 VIAAVWFHENKETDWRINSSPEALAAYR 277 (283)
T ss_dssp EEEEEEECCBSSSBCCTTSSHHHHHHHH
T ss_pred eEEEEEccCCCCCCCcccCCHHHHHHHH
Confidence 45688984 6999999999888764
No 18
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=23.81 E-value=47 Score=18.02 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=7.8
Q ss_pred eEEEEecCCCC
Q psy6305 12 VAVHWFRHGLR 22 (52)
Q Consensus 12 ~~l~WfR~DLR 22 (52)
..|.|+|.|=.
T Consensus 34 ~~V~W~k~~~~ 44 (225)
T 4fmk_A 34 SQVTWQRLDGT 44 (225)
T ss_dssp EEEEEECTTSC
T ss_pred eEEEEEECCCc
Confidence 45889997643
No 19
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=23.73 E-value=39 Score=18.21 Aligned_cols=10 Identities=20% Similarity=1.202 Sum_probs=7.6
Q ss_pred ceEEEEecCC
Q psy6305 11 EVAVHWFRHG 20 (52)
Q Consensus 11 ~~~l~WfR~D 20 (52)
...|.|||.+
T Consensus 37 ~~~V~W~k~~ 46 (125)
T 4gos_A 37 DIVIQWLKEG 46 (125)
T ss_dssp GCEEEEEETT
T ss_pred cEEEEEEEec
Confidence 4569999965
No 20
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=23.49 E-value=61 Score=16.02 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=8.1
Q ss_pred ceEEEEecCCC
Q psy6305 11 EVAVHWFRHGL 21 (52)
Q Consensus 11 ~~~l~WfR~DL 21 (52)
...+.|+|.+.
T Consensus 26 ~~~v~W~~~~~ 36 (109)
T 2oyp_A 26 LVPMCWGKGFC 36 (109)
T ss_dssp CCCEEEESSSC
T ss_pred eEEEEEEecCC
Confidence 34599999764
No 21
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=21.92 E-value=78 Score=15.36 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=10.8
Q ss_pred ceEEEEecCC--CCccC
Q psy6305 11 EVAVHWFRHG--LRLHD 25 (52)
Q Consensus 11 ~~~l~WfR~D--LRl~D 25 (52)
...+.|++++ ..+..
T Consensus 31 ~p~i~W~k~~~~~~~~~ 47 (93)
T 1wit_A 31 DPTATWTVGDSGAALAP 47 (93)
T ss_dssp SCEEEEECSTTTCBCST
T ss_pred CCEEEEEECCCCcccCC
Confidence 3469999998 66544
No 22
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Probab=20.05 E-value=88 Score=16.28 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=8.1
Q ss_pred ceEEEEecCC
Q psy6305 11 EVAVHWFRHG 20 (52)
Q Consensus 11 ~~~l~WfR~D 20 (52)
...++|||++
T Consensus 40 ~~~v~W~r~~ 49 (120)
T 3noi_A 40 IGSVTWFRDE 49 (120)
T ss_dssp CEEEEEEESS
T ss_pred eeEEEEEecc
Confidence 4579999987
Done!