RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6305
         (52 letters)



>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 185

 Score = 51.5 bits (122), Expect = 9e-11
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 14 VHWFRHGLRLHDNPALFEASLNSVLYPVFIFD 45
          + WFR  LR+ DNPAL  A     +  +F++ 
Sbjct: 3  IVWFRRDLRVEDNPALAAAVRAGPVIALFVWA 34


>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
          [TaxId: 274]}
          Length = 170

 Score = 50.7 bits (120), Expect = 2e-10
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 13 AVHWFRHGLRLHDNPALFEASLNSVLYPVFIFD 45
           + W R  LRLHD+PAL EA     +  + + D
Sbjct: 3  LLVWHRGDLRLHDHPALLEALARGPVVGLVVLD 35


>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
          6803 [TaxId: 1143]}
          Length = 204

 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 12 VAVHWFRHGLRLHDNPALFEASLNSV-LYPVFIFD 45
            + WFR+ LRLHD+  L  A  + + +  V+ +D
Sbjct: 7  TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYD 41


>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus
          elongatus [TaxId: 32046]}
          Length = 202

 Score = 47.7 bits (112), Expect = 2e-09
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 14 VHWFRHGLRLHDNPALFEASLNSV-LYPVFIFDGETAG 50
          + W R  LRL DN  L  A   S  L  +F  D +   
Sbjct: 4  LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQ 41


>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli
          [TaxId: 562]}
          Length = 200

 Score = 47.7 bits (112), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 12 VAVHWFRHGLRLHDNPALFEASLNS--VLYPVFIFD 45
            + WFR  LRLHDN AL  A  NS   +  ++I  
Sbjct: 2  THLVWFRQDLRLHDNLALAAACRNSSARVLALYIAT 37


>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 163

 Score = 23.7 bits (50), Expect = 1.4
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 1   MDTPNSPNNKEVAVHWFRHGLRLHDNPALFEASLNSVLYPVFIFDG 46
            +T  + N   VA H F H L L  +         +++YP + F  
Sbjct: 104 TNTSANYNLFLVAAHEFGHSLGLAHSSD-----PGALMYPNYAFRE 144


>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 158

 Score = 23.3 bits (49), Expect = 1.5
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)

Query: 1   MDTPNSPNNKEVAVHWFRHGLRLHDNPALFEASLNSVLYPVF 42
                  N    AVH   H L L  +         +V++P +
Sbjct: 99  TTHSGGTNLFLTAVHEIGHSLGLGHSS-----DPKAVMFPTY 135


>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 150

 Score = 23.3 bits (50), Expect = 1.5
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 8  NNKEVAVHWFRHGLRLHDNPAL 29
          NN E+   W R  ++     A+
Sbjct: 70 NNSEIRFRWLRLCIQSKWEDAI 91


>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 23.3 bits (50), Expect = 1.8
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 21  LRLHDNPALFEASLNSVLYPVFIFDGE 47
           +       LF   ++  L    IF+ +
Sbjct: 89  IDFTKKGFLFRGQISETLKTRGIFETK 115


>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID
          {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 134

 Score = 22.8 bits (49), Expect = 2.4
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 7  PNNKEVAVHWFRHGLRLHDNPALFEASLNSVLYPVFI 43
          P N   A    ++   +  +  +++  L+ ++YP+FI
Sbjct: 1  PENYIRAYSMLKN--WVDSSLEIYKPELSYIMYPIFI 35


>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 149

 Score = 22.8 bits (49), Expect = 2.6
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 5  NSPNNKEVAVHWFRHGLRLHDNPALFEASLNSVLYPVFI 43
            P   E      +H   +  +     A L+ + YP+F+
Sbjct: 15 GDPTMYEEYYSGLKH--FIECSLDCHRAELSQLFYPLFV 51


>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID
          {Encephalitozoon cuniculi [TaxId: 6035]}
          Length = 131

 Score = 21.6 bits (46), Expect = 5.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 23 LHDNPALFEASLNSVLYPVFI 43
          + D+  LF+  L  +LYP+FI
Sbjct: 13 IEDSLDLFKNDLLPLLYPLFI 33


>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 103

 Score = 21.2 bits (45), Expect = 6.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 25 DNPALFEASLNSVLYPVFIF 44
          D+P  F  + N  LYP F +
Sbjct: 46 DDPQSFRLAPNFSLYPQFTY 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 195,917
Number of extensions: 6020
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 13
Length of query: 52
Length of database: 2,407,596
Length adjustment: 23
Effective length of query: 29
Effective length of database: 2,091,806
Effective search space: 60662374
Effective search space used: 60662374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)