BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6307
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OT5|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|C Chain C, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
pdb|3OT5|D Chain D, 2.2 Angstrom Resolution Crystal Structure Of Putative
Udp-N- Acetylglucosamine 2-Epimerase From Listeria
Monocytogenes
Length = 403
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 158 VTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDAL 217
VT DAL+ QK +H +L + G N LI +T H + LG+ +
Sbjct: 196 VTGNTAIDALKTTVQKDYHHPILENLGDNRLILMTAH--------------RRENLGEPM 241
Query: 218 EQMWQKRRYHEVFFMIDTCQASSM-YEKFYSPNILAMASSLVGEDSLSHHVDP--AIGVY 274
+ M++ R ++++ + + + Y +P + A +++G H ++P AI +
Sbjct: 242 QGMFEAVRE-----IVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFH 296
Query: 275 IIDRYTY 281
R +Y
Sbjct: 297 NFLRKSY 303
>pdb|4EFP|A Chain A, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFP|B Chain B, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFQ|A Chain A, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFQ|B Chain B, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFR|A Chain A, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|B Chain B, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|C Chain C, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|D Chain D, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
Length = 239
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 144 HGGDGFLKFQDSEEVTSQELGDALEQMWQKRR-YHELLTDEGSNILIYLTGHGGDG 198
HG DG L F D ++ TS ++ +W+ + Y ++L E + L+ G +G
Sbjct: 108 HGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 163
>pdb|4I95|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
From Bacteroides Eggerthii Dsm 20697 At 1.81 A
Resolution
pdb|4I95|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
From Bacteroides Eggerthii Dsm 20697 At 1.81 A
Resolution
Length = 142
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 115 LTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLK-FQDSEEVTSQELGDALEQMWQK 173
+ G L PS + ++L+D+G I+ + G D + + ++++ +++E
Sbjct: 28 IPGVLKPSN--TFKVLSDDGR-IVNFTIRPGTDAIITGYGTYRQISAAAYKESIE----- 79
Query: 174 RRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVF 230
+ H D NIL + G GG +LK+ +++ EL + W++ VF
Sbjct: 80 KNIHLPXLDNKDNILEFEXGAGGVXYLKYFIEKDLNGNELNTWFHETWKRVTXPPVF 136
>pdb|3PUB|A Chain A, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
pdb|3PUB|B Chain B, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
Length = 251
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 144 HGGDGFLKFQDSEEVTSQELGDALEQMWQKRR-YHELLTDEGSNILIYLTGHGGDG 198
HG DG L F D ++ TS ++ +W+ + Y ++L E + L+ G +G
Sbjct: 109 HGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 164
>pdb|2YJG|A Chain A, Structure Of The Lactate Racemase Apoprotein From
Thermoanaerobacterium Thermosaccharolyticum
pdb|2YJG|B Chain B, Structure Of The Lactate Racemase Apoprotein From
Thermoanaerobacterium Thermosaccharolyticum
Length = 436
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 19/113 (16%)
Query: 193 GHGGDGFLK-FQDSEE-------VTSQELGDALEQMWQKRRY------HEVFFMIDTCQA 238
GHGG+GF + F++S++ + S+ + L W+ + H+V + D+
Sbjct: 322 GHGGEGFYRWFKESKDPQDVMNKILSRGRDETLPDQWEAQILARILINHKVIMVTDSKNY 381
Query: 239 SSMYEKFYSP-----NILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEF 286
+ + F +P L +A S+V DS + + + V + ++ ++ +F
Sbjct: 382 EYVKDMFMTPAKDLGEALKIAESIVNNDSKINVIPDGVSVIVREKASWSHPQF 434
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 39 YRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQ 88
+R + +V + +KR + ++ADD+AC N A + +A Q
Sbjct: 198 WRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILESAQQ 247
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 39 YRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQ 88
+R + +V + +KR + ++ADD+AC N A + +A Q
Sbjct: 198 WRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILESAQQ 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,436,261
Number of Sequences: 62578
Number of extensions: 481112
Number of successful extensions: 1400
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 13
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)