RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6307
(368 letters)
>gnl|CDD|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT),
subunit GPI8 [Posttranslational modification, protein
turnover, chaperones].
Length = 382
Score = 353 bits (907), Expect = e-120
Identities = 162/348 (46%), Positives = 212/348 (60%), Gaps = 51/348 (14%)
Query: 9 IFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIAD 68
+ L + ++NNWAVL+ TSRFWFNYRH+ANVL YR VKRLGIPDS IILM D
Sbjct: 13 LILLHVLGAAARTNTNNWAVLLSTSRFWFNYRHMANVLVFYRVVKRLGIPDSQIILMSYD 72
Query: 69 DMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQ 128
D ACN RN P +VFNN+++ D+YGED E+DY GYEVTVE FIRLLT R + P+SK+
Sbjct: 73 DQACNSRNLFPGSVFNNSDRAGDLYGEDSEIDYSGYEVTVEVFIRLLTARSGENHPKSKR 132
Query: 129 LLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNIL 188
LLTDE SNI
Sbjct: 133 --------------------------------------------------LLTDESSNIF 142
Query: 189 IYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSP 248
IY+TGHGGD FLKFQD+EE+TS++L DA+ Q+ K+RY+E+ FMIDTCQA+++Y+K YSP
Sbjct: 143 IYMTGHGGDAFLKFQDAEEMTSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSYSP 202
Query: 249 NILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKR 308
N+LA+ SS +G+ S SHH D IGV +IDR+TY+ L+FLE + + S T++D LA K
Sbjct: 203 NVLAVGSSEIGQSSYSHHSDSLIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLLASLNKE 262
Query: 309 VCISTIGIRTDLFRRDPKHVPITDFFGSIRPVEL-SAPINISDFKKPT 355
S +G+R +F R P ITDFF +++ L + F++
Sbjct: 263 PIHSHVGVRELVFDRRPSDFLITDFFANVQNSALELLKSHYHHFREAI 310
>gnl|CDD|216627 pfam01650, Peptidase_C13, Peptidase C13 family. Members of this
family are asparaginyl peptidases. The blood fluke
parasite Schistosoma mansoni has at least five Clan CA
cysteine peptidases in its digestive tract including
cathepsins B (2 isoforms), C, F and L. All have been
recombinantly expressed as active enzymes, albeit in
various stages of activation. In addition, a Clan CD
peptidase, termed asparaginyl endopeptidase or
'legumain' has been identified. This has formerly been
characterized as a 'haemoglobinase', but this term is
probably incorrect. Two cDNAs have been described for
Schistosoma mansoni legumain; one encodes an active
enzyme whereas the active site cysteine residue encoded
by the second cDNA is substituted by an asparagine
residue. Both forms have been recombinantly expressed.
Length = 258
Score = 144 bits (365), Expect = 7e-41
Identities = 81/278 (29%), Positives = 126/278 (45%), Gaps = 55/278 (19%)
Query: 25 NWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFN 84
WAVLV S ++NYRH A+V Y+ +K+ GI D +II+M+ DD+A NP NP P +FN
Sbjct: 1 LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFN 60
Query: 85 NANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGH 144
N DVY + V +DY G +VT NF+ +L G K L + N+ IY T H
Sbjct: 61 KPNGT-DVY-KGVPIDYTGNDVTPRNFLAVLLGDKSALKGSGKVLKSGPNDNVFIYFTDH 118
Query: 145 GGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQD 204
G G L F + + + +++L +AL++M + +Y +L
Sbjct: 119 GAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKL------------------------- 153
Query: 205 SEEVTSQELGDALEQMWQKRRYHEVFFMIDTCQASSMYE-KFYSPNILAMASSLVGEDSL 263
F ++ C++ SM+E NI A ++ E S
Sbjct: 154 -------------------------VFYVEACESGSMFEGLPKDINIYATTAANADESSW 188
Query: 264 S-HHVDPAIGVYIIDRYTYYALEFLEDVHLDSAKTMED 300
+ DP G + D ++ +E +D L S +T+E
Sbjct: 189 GTYCPDPEDGTCLGDLFSVNWMEDSDDHDL-SKETLEQ 225
>gnl|CDD|173792 cd04843, Peptidases_S8_11, Peptidase S8 family domain,
uncharacterized subfamily 11. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 277
Score = 31.9 bits (73), Expect = 0.38
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 59 DSHIILMIADDMACNPRNPRPATVFNNANQHIDVY--GEDV 97
DS I M+ A + F+N +DVY GE+V
Sbjct: 176 DSGAI-MVG---AGSSTTGHTRLAFSNYGSRVDVYGWGENV 212
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production
and conversion].
Length = 377
Score = 29.1 bits (66), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 46 LSIYRSVKRLGIPDSHIILMIADDMA--CNPRNPRPATV 82
L I + ++ LG+ + I + D +A C NPRP T
Sbjct: 328 LGIPKRLRDLGVKEEDIDKLAEDALADPCTATNPRPPTR 366
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding. The class I LysRS is found only in archaea
and some bacteria and has evolved separately from class
II LysRS, as the two do not share structural or
sequence similarity.
Length = 353
Score = 28.4 bits (64), Expect = 5.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 38 NYRHVANVLSIYRSVKRLGIPDSHIILMIADDM 70
N+R V + R+++ LG I DD
Sbjct: 37 NFREVITADLVARALRDLGFEVRLIY--SWDDY 67
>gnl|CDD|219850 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This
domain is found in bacterial proteins of the SWF/SNF/SWI
helicase family to the N-terminus of the SNF2 family
N-terminal domain (pfam00176) and together with the
Helicase conserved C-terminal domain (pfam00271). The
function of the domain is not clear.
Length = 376
Score = 28.4 bits (64), Expect = 5.9
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 123 TPRSKQLLTDEGSNILIYLTGHGGDGFLKFQ-DSEEVTSQELGDALEQMWQKRRYHEL 179
+ K L E +I + L+ D + + +E+ + L + +K++Y+ L
Sbjct: 239 SEAFKGLKVKESPSISGGIRIKSEGNLLEISFDIDGIDEEEVDNILRALREKKKYYRL 296
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 28.7 bits (64), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 291 HLDSAKTME---DFLAVCPKRVCISTIGIRTDLFRRDP-KHVPITDFFGS 336
++ AK M + +R+CI GI++ LF D K V + DFF S
Sbjct: 1579 YMPVAKMMAEKYNVNDYTKQRLCIIKEGIKS-LFENDKRKQVKLDDFFKS 1627
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 28.1 bits (63), Expect = 7.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 174 RRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEE 207
+ E + D +++ LTGHG LKF D+ E
Sbjct: 351 LKLREKIIDPDETVVLVLTGHG----LKFPDTVE 380
>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 750
Score = 28.1 bits (63), Expect = 9.2
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 94 GEDVEVDYRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGF--LK 151
G+ VE+ G E +E F+ L PP R +++ +E ++ G F K
Sbjct: 35 GDGVEIVLEGDEENLEEFLNRLKKEKPP-LARIEKVEIEE-------ISESGFTDFRIRK 86
Query: 152 FQDSEEVTSQELGDA------LEQMWQK--RRYH 177
+ +Q DA LE+++ RRY
Sbjct: 87 SEGKGNKNTQIPPDAATCEDCLEEIFDPNSRRYL 120
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,477,059
Number of extensions: 1916112
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 19
Length of query: 368
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 270
Effective length of database: 6,590,910
Effective search space: 1779545700
Effective search space used: 1779545700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)