RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6307
(368 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 1e-09
Identities = 59/373 (15%), Positives = 117/373 (31%), Gaps = 111/373 (29%)
Query: 2 QVHWLGAIFLST----IFVLNEAKH--SNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRL 55
++ WL ++ + +L + + NW D S N + + SI ++RL
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIH--SIQAELRRL 237
Query: 56 ----GIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENF 111
+ ++L ++ +N + FN + + + + R +VT +F
Sbjct: 238 LKSKPYENCLLVL---LNV----QNAKAWNAFNLSCK--------ILLTTRFKQVT--DF 280
Query: 112 IRLLTGRLPPSTPRSKQLLTDEGSNILI-YLTGHGGDGFLKFQD-SEEVTSQE------L 163
+ T S L DE ++L+ YL + QD EV + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-------CRPQDLPREVLTTNPRRLSII 333
Query: 164 GDALEQM---WQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTS--QELG---- 214
+++ W + + D+ + I+ + L + E L
Sbjct: 334 AESIRDGLATWD--NWKHVNCDKLTTII--------ESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 215 ------DALEQMWQKRRYHEVFFMIDTCQASSMYEK-----FYS------------PNIL 251
L +W +V +++ S+ EK S N
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 252 AMASSLVGEDSLSHHVDP-AIGVYIIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVC 310
A+ S+V ++ D + +D+Y Y + HL + + E
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERM--------- 490
Query: 311 ISTIGIRTDLFRR 323
LFR
Sbjct: 491 --------TLFRM 495
Score = 40.6 bits (94), Expect = 8e-04
Identities = 50/327 (15%), Positives = 89/327 (27%), Gaps = 74/327 (22%)
Query: 66 IADDMACNPRNPRPATVFNNANQHIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPPSTPR 125
+ + R P T +Y E + Y +V F + RL P
Sbjct: 94 LMSPIKTEQRQPSMMT---------RMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKL 140
Query: 126 SKQLLTDE-GSNILIYLTGHGGDGFLK-------FQDSEEVTSQELGDALEQMW----QK 173
+ LL N+LI G G K + + W
Sbjct: 141 RQALLELRPAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNC 192
Query: 174 RRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYHEVFFMI 233
+L E L+Y + ++ + L ++ + + Y ++
Sbjct: 193 NSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 234 DTCQASSMYEKF-YSPNILAMASSLVGEDSLSHHVDPAIGVYIIDRYTYYALEFLEDVHL 292
Q + + F S IL D LS T+ +L+ L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-----------AATTTHISLDHHSMT-L 298
Query: 293 DSAKTMEDFLAVC--------PKRVC------ISTIGIRTDLFRRDPKHVPITDFFGSIR 338
+ L P+ V +S I + R D + +
Sbjct: 299 TPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLAT---WDNWKHVN 351
Query: 339 PVELSAPINIS-DFKKPTLLLVEEREL 364
+L+ I S + +P E R++
Sbjct: 352 CDKLTTIIESSLNVLEPA----EYRKM 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 71/409 (17%), Positives = 139/409 (33%), Gaps = 106/409 (25%)
Query: 3 VHWLGAIFLSTIFVLNEAKHSNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSHI 62
+H L A L N+ ++ + + R +A R + +
Sbjct: 101 IHALAAKLLQE----NDTTLVKTKELI----KNYITARIMAK-----RPFDK---KSNSA 144
Query: 63 ILMIADDMACNPRNPRPATVFNNANQ-HIDVYGEDVEVDYRGYEVTVENFIRLLTGRLPP 121
+ + N + +F Q + D Y E++ Y+ Y V V + I+ L
Sbjct: 145 LFRAVGE-----GNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 122 --STPRSKQLLTDEGSNILIYLTGHG---GDGFLKFQDSEEVTSQELGDALEQMWQ---K 173
T + + +G NIL +L +L S ++ +G + Q+
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---LSIPISCPLIG--VIQLAHYVVT 252
Query: 174 RRYHELLTDEGSNILIYLTGHGGD----GFLKFQDSEEVTSQELGDALEQM-WQKRRYHE 228
+ E + L TGH + DS E + A+ + + R +E
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 229 VFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVD---PAIGVYIIDRYTYYALE 285
+ PN ++ S++ EDSL ++ P + + + + E
Sbjct: 313 AY-----------------PN-TSLPPSIL-EDSLENNEGVPSPMLSISNLTQ------E 347
Query: 286 FLEDV------HLDSAKTMEDFLAVC--PKRVCISTIGIRTDL------FRR-------D 324
++D HL + K +E +++ K + +S G L R+ D
Sbjct: 348 QVQDYVNKTNSHLPAGKQVE--ISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLD 403
Query: 325 PKHVPITD----FFGSIR--PVELSAPINISDFKKPTLLLVEERELDQD 367
+P ++ F S R PV ++P + S P L+ + + +
Sbjct: 404 QSRIPFSERKLKF--SNRFLPV--ASPFH-SHLLVPASDLINKDLVKNN 447
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 35.3 bits (81), Expect = 0.014
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 14/114 (12%)
Query: 154 DSEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQEL 213
++ + +L L Q ++ + + L+ L +G L +
Sbjct: 17 RGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQE---------- 66
Query: 214 GDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHV 267
+ + Y VF + T + + + L G +S +
Sbjct: 67 -EFARLWKRLVHYQHVFQKVQT--SPGVLLSSDLWKAIENTDFLRGIF-ISREL 116
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 31.7 bits (72), Expect = 0.26
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 149 FLKFQD-SEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEE 207
F ++ + EL L Q Y E +++ + G + F +
Sbjct: 39 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-FNLETCRLMVSMLDRDMSGTMGFNE--- 94
Query: 208 VTSQELGDALEQMWQK-RRYHEVFFMIDT 235
+++W + + F DT
Sbjct: 95 ---------FKELWAVLNGWRQHFISFDT 114
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 149 FLKFQD-SEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEE 207
F EV ++EL L Q Y + E I+I + G + F
Sbjct: 6 FSAVAGQDGEVDAEELQRCLTQSGINGTYSP-FSLETCRIMIAMLDRDHTGKMGFNA--- 61
Query: 208 VTSQELGDALEQMWQK-RRYHEVFFMIDT 235
+++W + E F +D
Sbjct: 62 ---------FKELWAALNAWKENFMTVDQ 81
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 31.4 bits (72), Expect = 0.42
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 46 LSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPAT 81
+++ +G+ + + +A NPRP
Sbjct: 305 HGAPVALRDIGMREEDLDRAADIALASPYWNPRPIE 340
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 30.4 bits (69), Expect = 0.46
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 149 FLKFQD-SEEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEE 207
F ++ + EL L Q Y E +++ + G + F +
Sbjct: 8 FASVAGQDGQIDADELQRCLTQSGIAGGYKP-FNLETCRLMVSMLDRDMSGTMGFNE--- 63
Query: 208 VTSQELGDALEQMWQK-RRYHEVFFMIDT 235
+++W + + F D+
Sbjct: 64 ---------FKELWAVLNGWRQHFISFDS 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.50
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 19/35 (54%)
Query: 239 SSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIGV 273
+S+ K Y+ DS PA+ +
Sbjct: 27 ASL--KLYAD------------DSA-----PALAI 42
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric,
regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus
anthracis} PDB: 1o6c_A
Length = 375
Score = 30.5 bits (70), Expect = 0.73
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 113 RLLTGRL-----PPSTPRSKQLLTDEG-SNILIYLTGHGGDGFLKFQDSEEVTSQELGDA 166
R LTG + P T +S L E I++TG+ T+ DA
Sbjct: 144 RQLTGVMADLHFSP-TAKSATNLQKENKDESRIFITGN--------------TAI---DA 185
Query: 167 LEQMWQKRRYHELLTDEGSNILIYLTGH 194
L+ ++ H +L G+N L+ +T H
Sbjct: 186 LKTTVKETYSHPVLEKLGNNRLVLMTAH 213
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1;
paracaspase, lymphoma, NF-KB signalling, caspase fold,
immun fold, hydrolase-hydrolase inhibitor complex; 1.75A
{Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Length = 390
Score = 30.6 bits (68), Expect = 0.82
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 156 EEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHG----GDGFLKFQDSEEVTSQ 211
++T E+ +A+++ D+G L+Y GHG G+ F+ D+
Sbjct: 47 LDLTEYEMRNAVDEFLLL-------LDKGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRS 99
Query: 212 ELG---DALEQMWQKRRYHEVFFMIDTCQASSMYEK 244
E + ++ Q++ F++D C+ + Y+
Sbjct: 100 ENCLCVQNILKLMQEKETGLNVFLLDMCRKRNDYDD 135
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center
for structural genomics of infec diseases, csgid, alpha
beta; HET: PGE; 2.20A {Listeria monocytogenes}
Length = 403
Score = 30.2 bits (69), Expect = 1.1
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 24/88 (27%)
Query: 113 RLLTGRL-----PPSTPRSKQLLTDEG-SNILIYLTGHGGDGFLKFQDSEEVTSQELGDA 166
R LTG + P T ++K+ L EG I++TG+ T+ DA
Sbjct: 163 RQLTGVMADIHFSP-TKQAKENLLAEGKDPATIFVTGN--------------TAI---DA 204
Query: 167 LEQMWQKRRYHELLTDEGSNILIYLTGH 194
L+ QK +H +L + G N LI +T H
Sbjct: 205 LKTTVQKDYHHPILENLGDNRLILMTAH 232
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M*
1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5
2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z*
3pip_Z* 1nwy_Z* 1nwx_Z* ...
Length = 60
Score = 27.1 bits (61), Expect = 1.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 259 GEDSLSHHVDPAIGVY 274
LSHH+ P G Y
Sbjct: 37 HGKKLSHHICPNCGYY 52
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI
1; alpha-beta protein, structural genomics, PSI; HET:
COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Length = 180
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/63 (15%), Positives = 26/63 (41%)
Query: 156 EEVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGD 215
E+ + + + LE + + + L++ S H G++K + + + +
Sbjct: 30 EQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIAGYVKVNIDDAQSEEMGAE 89
Query: 216 ALE 218
+LE
Sbjct: 90 SLE 92
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 29.6 bits (67), Expect = 1.6
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 46 LSIYRSVKRLGIPDSHIILMIADDM--ACNPRNPRPAT 81
++ + + G S I D NPRP T
Sbjct: 302 VNAPKRLSDYGFEASGIAEA-VDVTLEKVPANNPRPVT 338
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 28.9 bits (65), Expect = 1.8
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 149 FLKF-QDSEEVTSQELGDALEQMWQKRRYHEL--LTDEGSNILIYLTGHGGDGFLKFQDS 205
F + D EV++ EL + L ++ + + + ++ + G L F++
Sbjct: 10 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEE- 68
Query: 206 EEVTSQELGDALEQMWQK-RRYHEVFFMIDT 235
+ +W +++ ++ D
Sbjct: 69 -----------FKYLWNNIKKWQAIYKQFDV 88
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 28.3 bits (64), Expect = 4.4
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 46 LSIYRSVKRLGIPDSHIILMIADDM--ACNPRNPRPATV 82
+ I + ++ LG+ ++ M + NPR
Sbjct: 338 IGIPQHLRDLGVKETDFPYMAEMALKDGNAFSNPRKGNE 376
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 28.0 bits (63), Expect = 5.7
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 46 LSIYRSVKRLGIPDSHIILMIADDMACNPR-NPRPAT 81
L S+ LG+ + M A+ NP PRP
Sbjct: 300 LGAPSSLAALGVGADDLDPM-AELATANPYWCPRPIE 335
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease,
protein/DNA complex, hydrolase/DNA complex; 2.40A
{Synthetic} PDB: 2f03_A*
Length = 269
Score = 27.9 bits (61), Expect = 6.0
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 37 FNYRHVANVLSIYRSVKRLGIPDSHIILMIADDMACNPRNPRPATVFNNANQHIDVYGED 96
F YR + +V YR +K + +L + NP P T F A +H GE
Sbjct: 163 FYYRELKDVEGRYRELKSI------YVLSLPHARLKQRYNPDPDTSFFGAGKHSPARGEV 216
Query: 97 VEV 99
+
Sbjct: 217 ARI 219
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 27.5 bits (62), Expect = 7.4
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 46 LSIYRSVKRLGIPDSHIILMIADDM--ACNPRNPRPATV 82
+ I ++ LG + L+ + AC NPR
Sbjct: 334 IGIPANLTELGAKKEDVPLLADHALKDACALTNPRQGDQ 372
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 27.4 bits (61), Expect = 9.2
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 78 RPATVFNNANQH-IDVY----GEDVEVDYRGYEVTVENFIRLLTGRLPP 121
RP VFN A ++ + + ++ G E +E FIR + P
Sbjct: 26 RP-FVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPS 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,894,804
Number of extensions: 360549
Number of successful extensions: 935
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 29
Length of query: 368
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 273
Effective length of database: 4,049,298
Effective search space: 1105458354
Effective search space used: 1105458354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)