RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6307
(368 letters)
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.2 bits (68), Expect = 0.083
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 169 QMWQKRRYHELLTDEGSNI-LIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRR 225
+WQ ELL S I G K +DS +V ++W R+
Sbjct: 4 HLWQ--FLKELLLKPHSYGRFIRWLN-KEKGIFKIEDSAQVA---------RLWGIRK 49
Score = 26.3 bits (58), Expect = 2.1
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 128 QLLTDEGSNI-LIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRR 175
+LL S I G K +DS +V ++W R+
Sbjct: 11 ELLLKPHSYGRFIRWLN-KEKGIFKIEDSAQVA---------RLWGIRK 49
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId:
9606]}
Length = 277
Score = 30.2 bits (67), Expect = 0.34
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 8/89 (8%)
Query: 157 EVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHG-------GDGFLKFQDSEEVT 209
V + A + + ++ + HG G + D V+
Sbjct: 61 MVEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVS 120
Query: 210 SQELGDALE-QMWQKRRYHEVFFMIDTCQ 237
+++ + F I C
Sbjct: 121 VEKIVNIFNGTSCPSLGGKPKLFFIQACG 149
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 29.0 bits (65), Expect = 0.47
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 169 QMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRR 225
Q+WQ ELLTD+ I TG G + K D +EV + W KR+
Sbjct: 41 QLWQ--FLLELLTDKSCQSFISWTGDGWE--FKLSDPDEVA---------RRWGKRK 84
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 25.8 bits (57), Expect = 1.8
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 259 GEDSLSHHVDPAIGVY 274
LSHH+ P G Y
Sbjct: 36 HGKKLSHHICPNCGYY 51
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 28.1 bits (61), Expect = 1.8
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 101 YRGYEVTVENFIRLLTGRLPPSTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTS 160
R + + L ++ E L++ G G+ +
Sbjct: 199 PRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEV--TLVHAYGFSSAGYQ----QSWGAA 252
Query: 161 QELGDALEQMWQKRRYH 177
+++ +++ +RYH
Sbjct: 253 EDVAQLVDEA--FQRYH 267
Score = 25.8 bits (55), Expect = 9.1
Identities = 6/54 (11%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 174 RRYHELLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELGDALEQMWQKRRYH 227
R ++ + ++ G G+ ++++ +++ +RYH
Sbjct: 221 RGSARAAKEKEVTL-VHAYGFSSAGYQ----QSWGAAEDVAQLVDEA--FQRYH 267
>d1e6ya1 a.89.1.1 (A:1284-1569) Alpha chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 286
Score = 27.7 bits (62), Expect = 2.2
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 275 IIDRYTYYALEFLEDVHLDSAKTMEDFLAVCPKRVCISTIGIRTDLFRRD--PKH--VPI 330
I+D TYY ++++ D + +A +D V + I + L+ + K
Sbjct: 72 ILDNNTYYDVDYINDKYNGAATVGKD-NKVKASLEVVKDIATESTLYGIETYEKFPTALE 130
Query: 331 TDFFGSIRPVELSAPINIS 349
F GS R L+A ++
Sbjct: 131 DHFGGSQRATVLAAAAGVA 149
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
thermophilus [TaxId: 274]}
Length = 59
Score = 25.4 bits (56), Expect = 2.3
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 259 GEDSLSHHVDPAIGVY 274
H V P G Y
Sbjct: 36 KAMKPPHTVCPECGYY 51
>d1un8a1 a.208.1.1 (A:336-550) Citrobacter dihydroxyacetone kinase
extra ATP-binding domain {Citrobacter freundii [TaxId:
546]}
Length = 215
Score = 26.1 bits (57), Expect = 5.9
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 255 SSLVGEDSLSHHVDP-AIGVYII 276
+S + +SL ++DP A + ++
Sbjct: 185 ASYLSSESLLGNMDPGAQRLAMV 207
>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 238
Score = 25.8 bits (56), Expect = 8.7
Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 16/179 (8%)
Query: 157 EVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDS----EEVTSQE 212
EV ++ E + R + + S+ + L HG +G + + +++T+
Sbjct: 56 EVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFF 115
Query: 213 LGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASSLVGEDSLSHHVDPAIG 272
GD + K + F+I C+ + + I A L + +
Sbjct: 116 RGDRCRSLTGKPK----LFIIQACR-GTELDCGIETKIPVDADFLYAYSTAPGYYSW--- 167
Query: 273 VYIIDRYTYYALEFLEDVHLDSAKTM--EDFLAVCPKRVCISTIGIRTDLFRRDPKHVP 329
+++ + L + A + L ++V D K +P
Sbjct: 168 -RNSKDGSWFI-QSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIP 224
>d1hbna1 a.89.1.1 (A:270-549) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 280
Score = 25.8 bits (57), Expect = 9.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 275 IIDRYTYYALEFLEDVH 291
I+D +TY+ E++ED +
Sbjct: 73 ILDDFTYFGKEYVEDKY 89
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
frugiperda) [TaxId: 7108]}
Length = 256
Score = 25.5 bits (55), Expect = 9.8
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 157 EVTSQELGDALEQMWQKRRYHELLTDEGSNILIYLTGHGGDGFLKFQDS----EEVTSQE 212
+VT + E ++ E+ + +L+ + HG G L +D+ + +
Sbjct: 60 KVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYF 119
Query: 213 LGDALEQMWQKRRYHEVFFMIDTCQASSMYEKFYSPNILAMASS 256
D + K + F I CQ + S
Sbjct: 120 TADKCPTLAGKPK----LFFIQACQGDRLDGGITLSRTETDGSP 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,439,306
Number of extensions: 68466
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 17
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)