BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6309
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V33|A Chain A, Crystal Structure Of Mcpip1 Conserved Domain With
Zinc-Finger Motif
pdb|3V33|B Chain B, Crystal Structure Of Mcpip1 Conserved Domain With
Zinc-Finger Motif
Length = 223
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 64/87 (73%)
Query: 47 ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
IL +TPSRRV GK YDDR+IV++A E DG++VSND YRD+ E +WK IE RLLM
Sbjct: 96 ILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLM 155
Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
++FV + + P DPLGR GPSLD FLR
Sbjct: 156 YSFVNDKFMPPDDPLGRHGPSLDNFLR 182
>pdb|3V32|B Chain B, Crystal Structure Of Mcpip1 N-Terminal Conserved Domain
pdb|3V32|A Chain A, Crystal Structure Of Mcpip1 N-Terminal Conserved Domain
pdb|3V34|A Chain A, Crystal Structure Of Mcpip1 Conserved Domain With
Magnesium Ion In The Catalytic Center
pdb|3V34|B Chain B, Crystal Structure Of Mcpip1 Conserved Domain With
Magnesium Ion In The Catalytic Center
Length = 185
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 64/87 (73%)
Query: 47 ILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLM 106
IL +TPSRRV GK YDDR+IV++A E DG++VSND YRD+ E +WK IE RLLM
Sbjct: 96 ILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLM 155
Query: 107 FNFVKELLIFPQDPLGRDGPSLDEFLR 133
++FV + + P DPLGR GPSLD FLR
Sbjct: 156 YSFVNDKFMPPDDPLGRHGPSLDNFLR 182
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 53 SRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKE 112
++ + ++ CAYD + A E G IV R M N +W+ + R +F F
Sbjct: 19 AKAIQKRVPCAYDKTAL---ALEV-GDIVKVTR----MNINGQWEGEVNGRKGLFPFTHV 70
Query: 113 LLIFPQDP-LGRDGPS 127
+ PQ+P GPS
Sbjct: 71 KIFDPQNPDENESGPS 86
>pdb|4HXD|B Chain B, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|D Chain D, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 174
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 51 TPS--RRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFN 108
TPS R+V LQ A + Y E G +S D Y + ++++W ++E +L +
Sbjct: 53 TPSSFRKVKEHLQLAAEVYY--DTEPEAVGTGISKDEYIKVAMKDNEWGGSLEASMLSKH 110
Query: 109 FVKELLIF 116
++++
Sbjct: 111 LQTTIILW 118
>pdb|1CSJ|A Chain A, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
pdb|1CSJ|B Chain B, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
Length = 531
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEXKAKASTVKAKLL 83
>pdb|1GX5|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Gtp And
Manganese
Length = 536
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEXKAKASTVKAKLL 83
>pdb|1GX6|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Utp And
Manganese
Length = 531
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEXKAKASTVKAKLL 83
>pdb|1C2P|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
pdb|1C2P|B Chain B, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Length = 576
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 55 QKKVTFDRLQVLDDHYRDVLKEXKAKASTVKAKLL 89
>pdb|2AWZ|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AWZ|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AX0|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX0|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX1|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
pdb|2AX1|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
Length = 580
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|2BRK|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With An Allosteric Inhibitor (Compound 1)
pdb|2BRL|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With An Allosteric Inhibitor (Compound 2)
pdb|2WHO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase
From 1b Genotype In Complex With A Non-Nucleoside
Inhibitor
pdb|2WHO|B Chain B, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase
From 1b Genotype In Complex With A Non-Nucleoside
Inhibitor
pdb|2WRM|A Chain A, Identification Of Novel Allosteric Inhibitors Of Hepatitis
C Virus Ns5b Polymerase Thumb Domain (Site Ii) By
Structure-Based Design
Length = 536
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3HHK|A Chain A, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
pdb|3HHK|B Chain B, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
Length = 563
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|2WCX|A Chain A, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase In
Complex With Thienopyrrole-Based Finger-Loop Inhibitors
pdb|2XWY|A Chain A, Structure Of Mk-3281, A Potent Non-Nucleoside Finger-Loop
Inhibitor, In Complex With The Hepatitis C Virus Ns5b
Polymerase
Length = 537
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 50 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 84
>pdb|2GIQ|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIQ|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIR|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
pdb|2GIR|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
Length = 568
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 55 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 89
>pdb|2FVC|A Chain A, Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex
With A 3-(1,1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-
Hydroxy-2(1h)-Quinolinone
pdb|2FVC|B Chain B, Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex
With A 3-(1,1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-
Hydroxy-2(1h)-Quinolinone
Length = 563
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|2DXS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
pdb|2DXS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
Length = 552
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOV|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Plp
pdb|3AOW|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3AOW|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Akg
pdb|3ATH|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3ATH|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Four Akgs As Substrates
And Allosteric Effectors
pdb|3AV7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
pdb|3AV7|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Kynurenine
Aminotransferase In Complex With Pmp, Kyn As Substrates
And Kya As Products
Length = 448
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 67 RYIVQVATEYDGVIVSNDRYRDI 89
+Y++++A+EYD ++V +D Y ++
Sbjct: 240 KYLLELASEYDFIVVEDDPYGEL 262
>pdb|1NHU|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHU|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
Length = 578
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 57 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 91
>pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed Rna Polymerase Of
Hepatitis C Virus
pdb|2GC8|A Chain A, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2GC8|B Chain B, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2QE2|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE2|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|C Chain C, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|D Chain D, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|3VQS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|C Chain C, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|D Chain D, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
Length = 578
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|4EO6|A Chain A, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO6|B Chain B, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO8|A Chain A, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO8|B Chain B, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
Length = 577
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 56 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 90
>pdb|2I1R|A Chain A, Novel Thiazolones As Hcv Ns5b Polymerase Inhibitors:
Further Designs, Synthesis, Sar And X-Ray Complex
Structure
pdb|2I1R|B Chain B, Novel Thiazolones As Hcv Ns5b Polymerase Inhibitors:
Further Designs, Synthesis, Sar And X-Ray Complex
Structure
pdb|2HWH|A Chain A, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWH|B Chain B, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWI|A Chain A, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWI|B Chain B, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2IJN|A Chain A, Isothiazoles As Active-Site Inhibitors Of Hcv Ns5b
Polymerase
pdb|2IJN|B Chain B, Isothiazoles As Active-Site Inhibitors Of Hcv Ns5b
Polymerase
pdb|2O5D|A Chain A, Thiazolone-Acylsulfonamides As Novel Hcv Ns5b Polymerase
Allosteric Inhibitors: Convergence Of Structure-Based
Drug Design And X-Ray Crystallographic Study
pdb|2O5D|B Chain B, Thiazolone-Acylsulfonamides As Novel Hcv Ns5b Polymerase
Allosteric Inhibitors: Convergence Of Structure-Based
Drug Design And X-Ray Crystallographic Study
Length = 576
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 55 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 89
>pdb|3MF5|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
pdb|3MF5|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
Length = 570
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3BR9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BR9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D28|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D28|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D5M|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D5M|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3GYN|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3GYN|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3H2L|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3H2L|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
Length = 578
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3CIZ|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CIZ|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ2|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ2|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3FQK|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3FQK|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3G86|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3G86|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3H59|A Chain A, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H59|B Chain B, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H5S|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5S|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5U|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H5U|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H98|A Chain A, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
pdb|3H98|B Chain B, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
Length = 576
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 55 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 89
>pdb|2JC0|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb655264
pdb|2JC0|B Chain B, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb655264
pdb|2JC1|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb698223
pdb|2JC1|B Chain B, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb698223
Length = 570
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|2ZKU|A Chain A, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|B Chain B, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|C Chain C, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|D Chain D, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|3PHE|A Chain A, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|B Chain B, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|C Chain C, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|D Chain D, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3UDL|A Chain A, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|B Chain B, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|C Chain C, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|D Chain D, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
Length = 576
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 55 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 89
>pdb|2D3U|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3U|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D41|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
pdb|2D41|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
Length = 570
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|1OS5|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Novel Non-Competitive Inhibitor
Length = 576
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3CSO|A Chain A, Hcv Polymerase In Complex With A 1,5 Benzodiazepine
Inhibitor
pdb|3CSO|B Chain B, Hcv Polymerase In Complex With A 1,5 Benzodiazepine
Inhibitor
pdb|3GOL|A Chain A, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor (R)- 11d
pdb|3GOL|B Chain B, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor (R)- 11d
pdb|3GNV|A Chain A, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 1b
pdb|3GNV|B Chain B, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 1b
pdb|3GNW|A Chain A, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 4c
pdb|3GNW|B Chain B, Hcv Ns5b Polymerase In Complex With 1,5 Benzodiazepine
Inhibitor 4c
pdb|3HKY|A Chain A, Hcv Ns5b Polymerase Genotype 1b In Complex With 1,5
Benzodiazepine 6
pdb|3HKY|B Chain B, Hcv Ns5b Polymerase Genotype 1b In Complex With 1,5
Benzodiazepine 6
Length = 581
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 52 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 86
>pdb|2HAI|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With Novel Class Of Dihydropyrone-Containing Inhibitor
Length = 576
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|4DRU|A Chain A, Hcv Ns5b In Complex With Macrocyclic Indole Inhibitor
pdb|4DRU|B Chain B, Hcv Ns5b In Complex With Macrocyclic Indole Inhibitor
Length = 563
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|1NB4|A Chain A, Hc-J4 Rna Polymerase Apo-Form
pdb|1NB4|B Chain B, Hc-J4 Rna Polymerase Apo-Form
pdb|1NB6|A Chain A, Hc-J4 Rna Polymerase Complexed With Utp
pdb|1NB6|B Chain B, Hc-J4 Rna Polymerase Complexed With Utp
pdb|1NB7|A Chain A, Hc-J4 Rna Polymerase Complexed With Short Rna Template
Strand
pdb|1NB7|B Chain B, Hc-J4 Rna Polymerase Complexed With Short Rna Template
Strand
Length = 570
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|2XHU|A Chain A, Hcv-J4 Ns5b Polymerase Orthorhombic Crystal Form
pdb|2XHU|B Chain B, Hcv-J4 Ns5b Polymerase Orthorhombic Crystal Form
pdb|2XHW|A Chain A, Hcv-J4 Ns5b Polymerase Trigonal Crystal Form
Length = 579
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 50 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 84
>pdb|3MWV|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase
pdb|3MWV|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase
pdb|3MWW|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase
pdb|3MWW|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase
pdb|4GMC|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Thumb Inhibitor
pdb|4GMC|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Thumb Inhibitor
Length = 576
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3U4O|A Chain A, Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of Indole
C2 Acyl Sulfonamides
pdb|3U4O|B Chain B, Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of Indole
C2 Acyl Sulfonamides
pdb|3U4R|A Chain A, Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of Indole
C2 Acyl Sulfonamides
pdb|3U4R|B Chain B, Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of Indole
C2 Acyl Sulfonamides
Length = 578
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3QGD|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-1-[(4-Ethylphenyl)sulfonyl]-
N-(4-Methoxybenzyl)piperazine-2-Carboxamide
pdb|3QGD|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-1-[(4-Ethylphenyl)sulfonyl]-
N-(4-Methoxybenzyl)piperazine-2-Carboxamide
pdb|3QGE|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-N-(4-Methoxybenzyl)-1-{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGE|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-N-(4-Methoxybenzyl)-1-{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGF|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(6-Chloropyridazin-3-Yl)-N-(4-Methoxybenzyl)-1-
{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGF|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(6-Chloropyridazin-3-Yl)-N-(4-Methoxybenzyl)-1-
{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGG|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-
4-{[4-(Trifluoromethoxy)phenyl]sulfonyl}piperazin-1-
Yl]pyridazine-3- Carboxamide
pdb|3QGG|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-
4-{[4-(Trifluoromethoxy)phenyl]sulfonyl}piperazin-1-
Yl]pyridazine-3- Carboxamide
pdb|3Q0Z|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid
pdb|3Q0Z|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid
Length = 574
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 50 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 84
>pdb|2XHV|A Chain A, Hcv-J4 Ns5b Polymerase Point Mutant Orthorhombic Crystal
Form
pdb|2XHV|B Chain B, Hcv-J4 Ns5b Polymerase Point Mutant Orthorhombic Crystal
Form
Length = 579
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 50 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 84
>pdb|3LKH|A Chain A, Inhibitors Of Hepatitis C Virus Polymerase: Synthesis And
Characterization Of Novel
6-Fluoro-N-[2-Hydroxy-1(S)-Benzam
pdb|3LKH|B Chain B, Inhibitors Of Hepatitis C Virus Polymerase: Synthesis And
Characterization Of Novel
6-Fluoro-N-[2-Hydroxy-1(S)-Benzam
pdb|3SKA|A Chain A, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKA|B Chain B, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKE|A Chain A, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKE|B Chain B, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKH|A Chain A, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3SKH|B Chain B, I. Novel Hcv Ns5b Polymerase Inhibitors: Discovery Of
Indole 2- Carboxylic Acids With C3-Heterocycles
pdb|3UPH|A Chain A, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3UPH|B Chain B, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3TYQ|A Chain A, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
pdb|3TYQ|B Chain B, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
pdb|3TYV|A Chain A, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
pdb|3TYV|B Chain B, Sar Development And Discovery Of Potent Indole-Based
Inhibitors Of The Hepatitis C Virus Ns5b Polymerase
Length = 576
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|3FQL|A Chain A, Hepatitis C Virus Polymerase Ns5b (Con1 1-570) With
Hcv-796 Inhibitor
Length = 578
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 57 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 91
>pdb|3UPI|A Chain A, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3UPI|B Chain B, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
Length = 585
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 49 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 83
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 67 RYIVQVATEYDGVIVSNDRYRDI 89
+Y++++A+EYD ++V +D Y ++
Sbjct: 195 KYLLELASEYDFIVVEDDPYGEL 217
>pdb|1YVF|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00729145
pdb|1Z4U|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00799585
Length = 577
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLL 105
Q +D + V +D YRD+++E +T++ +LL
Sbjct: 50 QKKVTFDRLQVLDDHYRDVLKEMKAKASTVKAKLL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.144 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,335,610
Number of Sequences: 62578
Number of extensions: 172669
Number of successful extensions: 493
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 43
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)