Query psy6309
Match_columns 134
No_of_seqs 116 out of 169
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 23:04:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11977 RNase_Zc3h12a: Zc3h12 100.0 2.3E-35 4.9E-40 223.7 2.7 126 4-130 15-155 (155)
2 KOG3777|consensus 99.9 2E-27 4.3E-32 207.7 3.7 129 3-134 24-162 (443)
3 KOG3777|consensus 97.4 0.00012 2.7E-09 65.0 3.3 39 3-49 74-112 (443)
4 PF11977 RNase_Zc3h12a: Zc3h12 95.9 0.006 1.3E-07 46.2 2.7 39 3-49 68-106 (155)
5 PF14626 RNase_Zc3h12a_2: Zc3h 92.1 0.12 2.5E-06 39.3 2.3 40 42-87 55-94 (122)
6 PF12813 XPG_I_2: XPG domain c 92.0 0.33 7.1E-06 39.8 5.1 22 64-85 29-50 (246)
7 PF05991 NYN_YacP: YacP-like N 87.1 0.85 1.8E-05 35.1 3.7 27 65-91 102-128 (166)
8 COG1569 Predicted nucleic acid 86.9 1.2 2.7E-05 34.5 4.4 56 37-96 66-122 (142)
9 TIGR00305 probable toxin-antit 84.8 1.2 2.6E-05 31.5 3.2 27 62-90 85-112 (114)
10 PRK09333 30S ribosomal protein 81.8 1.6 3.5E-05 34.0 3.1 46 38-97 102-147 (150)
11 TIGR00028 Mtu_PIN_fam Mycobact 81.7 1.7 3.7E-05 30.6 3.0 26 62-89 103-128 (142)
12 smart00670 PINc Large family o 79.8 2.2 4.7E-05 28.9 2.9 23 63-85 84-107 (111)
13 COG4956 Integral membrane prot 76.7 1.8 4E-05 37.8 2.2 21 64-84 243-263 (356)
14 PF14367 DUF4411: Domain of un 75.5 2.4 5.3E-05 32.3 2.4 24 63-86 103-126 (162)
15 TIGR03875 RNA_lig_partner RNA 74.9 3.3 7.2E-05 33.9 3.1 23 63-85 157-179 (206)
16 COG1412 Uncharacterized protei 71.9 3.7 8E-05 31.4 2.6 40 63-111 84-124 (136)
17 PF01927 Mut7-C: Mut7-C RNAse 69.2 4.6 9.9E-05 30.4 2.6 22 64-85 29-50 (147)
18 PRK04358 hypothetical protein; 67.5 6.2 0.00013 32.6 3.2 23 63-85 161-183 (217)
19 PF08745 UPF0278: UPF0278 fami 66.8 3.3 7.1E-05 33.9 1.4 23 63-85 154-176 (205)
20 KOG1752|consensus 66.7 26 0.00056 25.4 6.0 70 38-115 7-78 (104)
21 COG1458 Predicted DNA-binding 65.4 7 0.00015 32.3 3.1 27 65-91 163-190 (221)
22 PF08914 Myb_DNA-bind_2: Rap1 64.0 2.5 5.4E-05 28.4 0.2 34 61-94 5-41 (65)
23 PF01850 PIN: PIN domain; Int 61.5 8.2 0.00018 25.9 2.5 23 63-85 90-113 (121)
24 PRK13764 ATPase; Provisional 59.4 10 0.00022 35.3 3.4 28 64-91 90-117 (602)
25 COG2238 RPS19A Ribosomal prote 55.7 14 0.00031 28.8 3.2 33 38-75 102-134 (147)
26 COG1848 Predicted nucleic acid 54.4 11 0.00025 27.0 2.3 22 64-85 104-126 (140)
27 PF14066 DUF4256: Protein of u 49.4 9.5 0.00021 30.5 1.3 35 57-91 71-117 (173)
28 PTZ00095 40S ribosomal protein 47.8 21 0.00046 28.4 3.0 35 38-75 126-160 (169)
29 PRK13725 plasmid maintenance p 47.1 23 0.0005 25.9 3.0 22 63-84 95-116 (132)
30 PF05391 Lsm_interact: Lsm int 43.9 9.2 0.0002 20.8 0.3 11 79-89 8-18 (21)
31 KOG1798|consensus 43.0 43 0.00092 35.4 4.9 86 15-121 804-911 (2173)
32 PF14332 DUF4388: Domain of un 42.9 65 0.0014 21.7 4.6 73 2-76 19-98 (103)
33 PF04900 Fcf1: Fcf1; InterPro 42.8 48 0.001 23.0 4.0 23 63-85 51-74 (101)
34 COG1167 ARO8 Transcriptional r 40.9 57 0.0012 28.7 5.0 49 45-93 227-276 (459)
35 PF01090 Ribosomal_S19e: Ribos 37.7 21 0.00046 27.5 1.6 34 38-75 101-134 (139)
36 COG1487 VapC Predicted nucleic 37.0 42 0.00091 24.0 3.0 23 63-85 94-116 (133)
37 PF13289 SIR2_2: SIR2-like dom 36.8 30 0.00065 24.2 2.2 28 77-104 57-84 (143)
38 KOG3740|consensus 35.3 11 0.00023 35.9 -0.5 62 3-73 639-706 (706)
39 PF08745 UPF0278: UPF0278 fami 34.2 59 0.0013 26.7 3.7 42 37-92 160-201 (205)
40 COG1656 Uncharacterized conser 32.5 40 0.00086 26.8 2.4 22 64-85 35-56 (165)
41 COG4113 Predicted nucleic acid 31.3 37 0.0008 25.7 2.0 24 61-85 95-118 (134)
42 PRK07366 succinyldiaminopimela 30.4 69 0.0015 26.6 3.6 47 45-91 166-212 (388)
43 COG2019 AdkA Archaeal adenylat 30.2 25 0.00053 28.6 0.9 33 60-94 32-64 (189)
44 PRK09482 flap endonuclease-lik 29.7 85 0.0018 26.2 4.0 45 37-91 88-137 (256)
45 PF13470 PIN_3: PIN domain 29.6 66 0.0014 22.1 2.9 24 62-85 94-118 (119)
46 cd07581 nitrilase_3 Uncharacte 29.5 1.9E+02 0.0042 22.3 5.9 70 10-85 134-203 (255)
47 COG2042 Uncharacterized conser 29.3 60 0.0013 26.2 2.9 56 48-112 50-105 (179)
48 PF10465 Inhibitor_I24: PinA p 28.5 95 0.0021 24.0 3.8 58 38-104 81-139 (140)
49 KOG2244|consensus 28.4 30 0.00065 32.9 1.2 17 109-125 191-207 (786)
50 TIGR03190 benz_CoA_bzdN benzoy 28.3 70 0.0015 27.5 3.4 30 64-93 239-274 (377)
51 PF12793 SgrR_N: Sugar transpo 28.1 62 0.0013 23.7 2.6 36 38-75 40-79 (115)
52 PF08346 AntA: AntA/AntB antir 27.2 29 0.00063 23.6 0.7 25 88-112 8-32 (71)
53 COG3744 PIN domain nuclease, a 26.9 54 0.0012 25.0 2.2 24 63-86 96-119 (130)
54 smart00475 53EXOc 5'-3' exonuc 26.5 1E+02 0.0022 25.5 3.9 41 37-85 88-133 (259)
55 PF11348 DUF3150: Protein of u 26.2 52 0.0011 27.3 2.2 20 86-105 112-131 (257)
56 PF04198 Sugar-bind: Putative 25.4 1.2E+02 0.0026 24.7 4.1 57 45-101 76-140 (255)
57 PRK04358 hypothetical protein; 24.6 1.4E+02 0.003 24.8 4.3 42 37-92 167-208 (217)
58 COG2390 DeoR Transcriptional r 24.4 1.3E+02 0.0029 25.8 4.4 55 47-101 140-203 (321)
59 COG5008 PilU Tfp pilus assembl 24.3 1E+02 0.0022 27.2 3.6 48 33-83 115-179 (375)
60 COG0324 MiaA tRNA delta(2)-iso 24.1 61 0.0013 27.9 2.3 22 68-89 19-40 (308)
61 KOG3333|consensus 22.8 2.4E+02 0.0052 22.7 5.2 79 2-83 58-156 (188)
62 TIGR03875 RNA_lig_partner RNA 22.7 1.5E+02 0.0033 24.3 4.2 42 37-92 163-204 (206)
63 PF02639 DUF188: Uncharacteriz 22.7 75 0.0016 23.8 2.3 20 64-84 40-59 (130)
64 COG1671 Uncharacterized protei 22.7 54 0.0012 25.7 1.5 23 63-86 54-76 (150)
65 PRK14976 5'-3' exonuclease; Pr 22.4 1.4E+02 0.0029 25.0 4.0 40 37-84 94-138 (281)
66 PRK15468 carboxysome structura 22.0 84 0.0018 23.6 2.4 46 3-55 3-51 (111)
67 PRK15001 SAM-dependent 23S rib 21.3 76 0.0016 27.8 2.4 29 63-91 29-60 (378)
68 COG2402 Predicted nucleic acid 21.0 73 0.0016 24.2 1.9 23 63-85 99-122 (135)
69 COG1855 ATPase (PilT family) [ 20.7 82 0.0018 29.5 2.5 29 63-91 93-121 (604)
70 PF14359 DUF4406: Domain of un 20.6 2E+02 0.0043 20.1 4.0 42 39-83 22-67 (92)
71 PRK08175 aminotransferase; Val 20.5 2.2E+02 0.0047 23.8 4.9 42 46-91 166-211 (395)
No 1
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=100.00 E-value=2.3e-35 Score=223.65 Aligned_cols=126 Identities=37% Similarity=0.575 Sum_probs=97.2
Q ss_pred ccCceeecccccccceeeeeecC--cccccCChHH-------------HHHHhhhhcCcEEeCCCcccCCccccccchHH
Q psy6309 4 KSGILHYTPSRRVDGKLQCAYDD--RYIPFRSPQV-------------FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRY 68 (134)
Q Consensus 4 ~~g~~~~~p~r~i~~~~~~~~dd--r~I~~~~p~~-------------~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~ 68 (134)
.||...++++|+|..++.+|... ..+.++.+.+ .++. ++++|.|.+||+++.+|+++++|||+|
T Consensus 15 ~~~~~~~f~~~~i~~~v~~~~~rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~-l~~~~~i~~tp~~~~~g~~~~~ydD~~ 93 (155)
T PF11977_consen 15 SHGNQKFFSVRGIQIAVEYFKSRGHEVVVVFPPNYRYKKLAKKSDDQEELEK-LIRKGIIYFTPSGSNYGSRSRNYDDRY 93 (155)
T ss_dssp HHTTTTSEEHHHHHHHHHHHHHTT---EEEEEEGGGGS-TTS-EESTCHHHH-HHHTTSEEEE-EEEETTEEEEB-HHHH
T ss_pred hcCCCCCcCHHHHHHHHHHHHHcCCCeEEEEcchhhhccccCCCChHHHHHH-HHHCCeEEEcCCCCCCCCcccccchHH
Confidence 45556668889999888888777 3466666565 4555 469999999999999999999999999
Q ss_pred HHHHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEecCCCCCCCCCCChhh
Q psy6309 69 IVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDE 130 (134)
Q Consensus 69 il~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm~pdDplGr~Gp~L~~ 130 (134)
||++|.++||+|||||+|||++.++|+|+++|++|+|+|||++|.||||+||+||+||+|++
T Consensus 94 il~~A~~~~a~IVSND~frD~~~~~~~~~~~~~~~~i~~tf~~~~~~~~~d~~~r~~~~l~~ 155 (155)
T PF11977_consen 94 ILYYAEEKDAVIVSNDRFRDHIFENPELRRWIERRLIRFTFVGDEFMPPPDPLGRVGPSLED 155 (155)
T ss_dssp HHHHHHHTT-EEE-S---HHHHHH-HHHHHHHHHHEE--EEETTEEE--SSTTTTTS--HH-
T ss_pred HHHHHHHcCCEEEeCchHHHHhhcchHHHHHHHHeeeeEEEECCEEEcCCCccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 2
>KOG3777|consensus
Probab=99.93 E-value=2e-27 Score=207.71 Aligned_cols=129 Identities=33% Similarity=0.528 Sum_probs=118.8
Q ss_pred cccCceeecccccccceeeeeecC--cccccCChHHH--------HHHhhhhcCcEEeCCCcccCCccccccchHHHHHH
Q psy6309 3 YKSGILHYTPSRRVDGKLQCAYDD--RYIPFRSPQVF--------IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQV 72 (134)
Q Consensus 3 ~~~g~~~~~p~r~i~~~~~~~~dd--r~I~~~~p~~~--------lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~ 72 (134)
|-||=--+|+||++...++.|.+. |-|+++.|.|. ....++++.+++|||++.+.|++.+||||+|++++
T Consensus 24 ls~G~~~~f~~r~~~v~~~~~~~~~~rd~tv~~~~~r~e~~~p~~~l~~l~~~~~~~ftp~~~~~~~r~~c~~~rf~~~~ 103 (443)
T KOG3777|consen 24 LSQGNEEVFSCRGILVSVDWFLQRGHRDITVLVPSWRKEATRPDAILRELEEKKILVFTPDRSIQGSRVICYDRRFSASL 103 (443)
T ss_pred hcccchhheecccceeehhhhhhhcccCcchhchhhhhcCCchHHHHHHHHhccccccCCChhhccceeeeehhhhHhhh
Confidence 556666789999999999888887 99999999993 33446799999999999999999999999999999
Q ss_pred HhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEecCCCCCCCCCCChhhhhcC
Q psy6309 73 ATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLIFPQDPLGRDGPSLDEFLRF 134 (134)
Q Consensus 73 A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm~pdDplGr~Gp~L~~~L~~ 134 (134)
|.|++|+||+||+|||++-|.| .+|++|+|+|+|+++.||+||||+||+||+|+.||++
T Consensus 104 ~~~s~~~~~~~dn~rd~~le~~---~~~~e~ll~~s~~~~~~mpPDdplgr~GPsl~~fL~k 162 (443)
T KOG3777|consen 104 ARESDGIVSLNDNYRDLILESP---RFVEERLLSYSFANSKFMPPDDPLGREGPSLDNFLSK 162 (443)
T ss_pred hccccceecCCchHHHHHhhcc---cchhhHHHHhhhhhcccCCCCCcccccCcchhhhhhh
Confidence 9999999999999999999999 6799999999999999999999999999999999963
No 3
>KOG3777|consensus
Probab=97.39 E-value=0.00012 Score=65.05 Aligned_cols=39 Identities=31% Similarity=0.516 Sum_probs=36.6
Q ss_pred cccCceeecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEE
Q psy6309 3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILH 49 (134)
Q Consensus 3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~ 49 (134)
+++.+++|||+|.+.|++.+|||+||| +++++|.+|+++
T Consensus 74 ~~~~~~~ftp~~~~~~~r~~c~~~rf~--------~~~~~~s~~~~~ 112 (443)
T KOG3777|consen 74 EEKKILVFTPDRSIQGSRVICYDRRFS--------ASLARESDGIVS 112 (443)
T ss_pred HhccccccCCChhhccceeeeehhhhH--------hhhhccccceec
Confidence 367789999999999999999999999 999999999998
No 4
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=95.94 E-value=0.006 Score=46.22 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=32.7
Q ss_pred cccCceeecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEE
Q psy6309 3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILH 49 (134)
Q Consensus 3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~ 49 (134)
.+.|.+.+||++...|+...+|||+|| |+.|.+..|+|+
T Consensus 68 ~~~~~i~~tp~~~~~g~~~~~ydD~~i--------l~~A~~~~a~IV 106 (155)
T PF11977_consen 68 IRKGIIYFTPSGSNYGSRSRNYDDRYI--------LYYAEEKDAVIV 106 (155)
T ss_dssp HHTTSEEEE-EEEETTEEEEB-HHHHH--------HHHHHHTT-EEE
T ss_pred HHCCeEEEcCCCCCCCCcccccchHHH--------HHHHHHcCCEEE
Confidence 467999999999999999999999999 999988877777
No 5
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=92.14 E-value=0.12 Score=39.26 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=28.3
Q ss_pred hhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhh
Q psy6309 42 YFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYR 87 (134)
Q Consensus 42 le~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fR 87 (134)
|.+.|+|.|.=-+. -+ ---+-+++.|++++|++|||..||
T Consensus 55 L~~l~lIkFi~~~~--~~----~~~~eV~~~Aek~~GI~VSs~E~~ 94 (122)
T PF14626_consen 55 LCDLDLIKFIEKRN--RK----KWFNEVLDEAEKTHGIFVSSSEYR 94 (122)
T ss_pred HHhcCceeeecccc--HH----HHHHHHHHHHHHcCcEEECCHHHh
Confidence 45889998832221 01 112578999999999999999875
No 6
>PF12813 XPG_I_2: XPG domain containing
Probab=92.04 E-value=0.33 Score=39.82 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.6
Q ss_pred cchHHHHHHHhhcCCEEEeCch
Q psy6309 64 YDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND~ 85 (134)
.+|.+|..+|.++||.|+|||-
T Consensus 29 EAD~~~A~~A~~~~~~VLt~DS 50 (246)
T PF12813_consen 29 EADRECAALARKWGCPVLTNDS 50 (246)
T ss_pred cchHHHHHHHHHcCCeEEccCC
Confidence 4999999999999999999984
No 7
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=87.12 E-value=0.85 Score=35.13 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=12.8
Q ss_pred chHHHHHHHhhcCCEEEeCchhhHHHh
Q psy6309 65 DDRYIVQVATEYDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 65 DDr~il~~A~e~~G~IVSND~fRD~~~ 91 (134)
.|+-+...|...||..+|...|.+.++
T Consensus 102 SD~~iq~~~~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 102 SDREIQRAARGRGAKRISSEEFLRELK 128 (166)
T ss_pred CCHHHHHHHhhCCCEEEcHHHHHHHHH
Confidence 444444444444444444444444444
No 8
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=86.93 E-value=1.2 Score=34.51 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCC-EEEeCchhhHHHhhcHHH
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDG-VIVSNDRYRDIMQENDKW 96 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G-~IVSND~fRD~~~e~p~~ 96 (134)
.+..+.+..-.+..+|+..++- .-+.+|.+.|++|.+-.| +|||-|+ |++..+++-
T Consensus 66 ~v~~l~~~~~~i~I~p~~~f~~--~RDp~Dn~~L~~A~~~kA~~lvTgD~--dLL~lr~~n 122 (142)
T COG1569 66 LVLVLFESVSLIAINPLEKFNI--CRDPKDNKLLALAYESKADYLVTGDQ--DLLVLRDEN 122 (142)
T ss_pred HHHHHHHhheeEeecccccccc--cCCchHHHHHHHHHhccCCEEEEcch--hhheecccC
Confidence 4445444444555888876331 116788899999999999 9999999 999877654
No 9
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=84.80 E-value=1.2 Score=31.45 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=23.3
Q ss_pred cccchHHHHHHHhhcCC-EEEeCchhhHHH
Q psy6309 62 CAYDDRYIVQVATEYDG-VIVSNDRYRDIM 90 (134)
Q Consensus 62 ~~yDDr~il~~A~e~~G-~IVSND~fRD~~ 90 (134)
-+.+|..++..|...++ +|||+| ||+.
T Consensus 85 ~D~~D~~~l~~A~~~~ad~iVT~D--kdll 112 (114)
T TIGR00305 85 RDKKDNKFLNTAYASKANALITGD--TDLL 112 (114)
T ss_pred CCchhHHHHHHHHhcCCCEEEECC--HHHh
Confidence 47889999999999998 999999 4654
No 10
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=81.76 E-value=1.6 Score=34.03 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=36.4
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhhcHHHH
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWK 97 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e~p~~r 97 (134)
||. ||+.|+|..+| .|+++++-.-+++=++|.+ -+.++..++|++.
T Consensus 102 Lqq-LE~~glVek~~----~GR~lT~~G~~~LD~iA~~---------i~~~~~~~~p~l~ 147 (150)
T PRK09333 102 LQQ-LEKAGLVEKTK----KGRVITPKGRSLLDNLAAE---------VKKELAEERPELE 147 (150)
T ss_pred HHH-HHHCCCeeeCC----CCCEeCHHHHHHHHHHHHH---------HHHHHHhhCcccc
Confidence 777 59999999988 5888999998999899977 2455666667664
No 11
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=81.66 E-value=1.7 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.1
Q ss_pred cccchHHHHHHHhhcCCEEEeCchhhHH
Q psy6309 62 CAYDDRYIVQVATEYDGVIVSNDRYRDI 89 (134)
Q Consensus 62 ~~yDDr~il~~A~e~~G~IVSND~fRD~ 89 (134)
.+..|..++..|.+.|+.+||+|+ |+
T Consensus 103 ~~~~D~~i~a~A~~~~~~lvT~D~--~f 128 (142)
T TIGR00028 103 RLVTDAHLAALAREHGAELVTFDR--GF 128 (142)
T ss_pred CCchHHHHHHHHHHcCCEEEecCC--Cc
Confidence 368999999999999999999995 55
No 12
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=79.81 E-value=2.2 Score=28.95 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.2
Q ss_pred ccchHHHHHHHhhc-CCEEEeCch
Q psy6309 63 AYDDRYIVQVATEY-DGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~-~G~IVSND~ 85 (134)
+.+|..++.+|.+. ..+|||||.
T Consensus 84 ~~~D~~il~~a~~~~~~~lvT~D~ 107 (111)
T smart00670 84 LPNDALILATAKELGNVVLVTNDR 107 (111)
T ss_pred CCChHHHHHHHHHCCCCEEEeCCc
Confidence 34788999999999 899999985
No 13
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=76.73 E-value=1.8 Score=37.84 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.2
Q ss_pred cchHHHHHHHhhcCCEEEeCc
Q psy6309 64 YDDRYIVQVATEYDGVIVSND 84 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND 84 (134)
.-|.-.+++|++++|.+||||
T Consensus 243 eVD~KLvklAk~~~g~lvTND 263 (356)
T COG4956 243 EVDSKLVKLAKVTGGKLVTND 263 (356)
T ss_pred hHHHHHHHHHHHhCCEEEecc
Confidence 457889999999999999999
No 14
>PF14367 DUF4411: Domain of unknown function (DUF4411)
Probab=75.47 E-value=2.4 Score=32.34 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=22.4
Q ss_pred ccchHHHHHHHhhcCCEEEeCchh
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDRY 86 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~f 86 (134)
.-+|++++.+|...|++|||+...
T Consensus 103 ~~ADp~LIA~A~~~~~~VVT~E~~ 126 (162)
T PF14367_consen 103 SVADPWLIAYAKAYGATVVTHEVS 126 (162)
T ss_pred ccCCHHHHHHHHhcCCEEEccCCC
Confidence 569999999999999999999887
No 15
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=74.93 E-value=3.3 Score=33.93 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
|.-|-=+|.+|.|.+|.+||+|.
T Consensus 157 S~~DidvlaLA~ELda~lvTdD~ 179 (206)
T TIGR03875 157 SAEDLDVLLLAKELDAAVVSADE 179 (206)
T ss_pred chhhHHHHHHHHHcCcEEEeCcH
Confidence 55777889999999999999985
No 16
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=71.94 E-value=3.7 Score=31.44 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=29.7
Q ss_pred ccchHHHHHHHhhcC-CEEEeCchhhHHHhhcHHHHHHHhcccccceecC
Q psy6309 63 AYDDRYIVQVATEYD-GVIVSNDRYRDIMQENDKWKATIERRLLMFNFVK 111 (134)
Q Consensus 63 ~yDDr~il~~A~e~~-G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~g 111 (134)
.|.|.-++++|.++| .+|.|||.= +++-++++=+|.-+..
T Consensus 84 ~~aDe~i~~~a~~~~~~iVaTnD~e---------Lk~rlr~~GIPvi~lr 124 (136)
T COG1412 84 RYADECLLEAALKHGRYIVATNDKE---------LKRRLRENGIPVITLR 124 (136)
T ss_pred CChHHHHHHHHHHcCCEEEEeCCHH---------HHHHHHHcCCCEEEEe
Confidence 578889999999999 999999852 5555555556655444
No 17
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=69.16 E-value=4.6 Score=30.35 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=17.1
Q ss_pred cchHHHHHHHhhcCCEEEeCch
Q psy6309 64 YDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND~ 85 (134)
.+|..++++|.+.|-+|||.|.
T Consensus 29 ~~D~~il~~A~~e~RillTrd~ 50 (147)
T PF01927_consen 29 IDDDEILELAREEGRILLTRDR 50 (147)
T ss_pred CChHHHHHHhhhCCeEEEECCH
Confidence 3677788888888888888874
No 18
>PRK04358 hypothetical protein; Provisional
Probab=67.48 E-value=6.2 Score=32.61 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.5
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
|.-|-=+|.+|.|.||.+||+|.
T Consensus 161 S~~DidvlaLA~ELda~lvTdD~ 183 (217)
T PRK04358 161 SAEDLDVLLLAKELDAAVVSADE 183 (217)
T ss_pred chhhHHHHHHHHHhCCEEEeCCH
Confidence 45666778899999999999885
No 19
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=66.82 E-value=3.3 Score=33.94 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=14.7
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
|-.|--+|-+|.|.||.+||+|.
T Consensus 154 S~~D~dvl~LA~El~a~lvt~D~ 176 (205)
T PF08745_consen 154 SREDIDVLLLALELDAVLVTDDY 176 (205)
T ss_dssp -HHHHHHHHHHHHHT--EE---H
T ss_pred ChHhHHHHHHHHHcCCEEEeCCH
Confidence 45777889999999999999985
No 20
>KOG1752|consensus
Probab=66.70 E-value=26 Score=25.43 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=48.8
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcC--CEEEeCchhhHHHhhcHHHHHHHhcccccceecCCeEe
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYD--GVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKELLI 115 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~--G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd~fm 115 (134)
++.++.+...|+|+.+. |-.=..+-.+-.+.+ -.||..|+..+-.+-...+.++--.|-+|+-|+|+.|+
T Consensus 7 v~~~i~~~~VVifSKs~--------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~i 78 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSS--------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFI 78 (104)
T ss_pred HHHHhhcCCEEEEECCc--------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEE
Confidence 55666788999999877 333333555555533 38999998865554445555556688999999999886
No 21
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=65.44 E-value=7 Score=32.27 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=20.0
Q ss_pred chHHHHHHHhhcCCEEEeCch-hhHHHh
Q psy6309 65 DDRYIVQVATEYDGVIVSNDR-YRDIMQ 91 (134)
Q Consensus 65 DDr~il~~A~e~~G~IVSND~-fRD~~~ 91 (134)
-|--+|=+|.|.||.|||.|. -|.|++
T Consensus 163 pDlDvLLLAkELdaavVssD~Gir~WAe 190 (221)
T COG1458 163 PDLDVLLLAKELDAAVVSSDEGIRTWAE 190 (221)
T ss_pred chhHHHHHHHHhCceEEecchhHHHHHH
Confidence 455678899999999999985 344433
No 22
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=63.96 E-value=2.5 Score=28.36 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=26.4
Q ss_pred ccccchHHHHHHHh---hcCCEEEeCchhhHHHhhcH
Q psy6309 61 QCAYDDRYIVQVAT---EYDGVIVSNDRYRDIMQEND 94 (134)
Q Consensus 61 ~~~yDDr~il~~A~---e~~G~IVSND~fRD~~~e~p 94 (134)
++..||..|+++.. ..++-+.-|.-|.++.+++|
T Consensus 5 fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~ 41 (65)
T PF08914_consen 5 FTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP 41 (65)
T ss_dssp --HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S
T ss_pred CCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Confidence 56789999999995 44678889999999999987
No 23
>PF01850 PIN: PIN domain; InterPro: IPR002716 The PilT protein, N-terminal domain (PIN) is a compact domain of about 100 amino acids. The domain has two nearly invariant aspartates and forms a coiled-coil with other monomer units to polymerise a pilus fibre []. The function of the PIN domain is unknown but a role in signalling appears likely given the presence of this domain in some bacterial plasmid stability proteins and Dis3 from yeast that is implicated in mitotic control [].; PDB: 3TND_G 2H1O_B 2BSQ_B 2H1C_A 2FE1_A 3ZVK_C 1V8P_F 1V8O_C 3H87_A 1O4W_A ....
Probab=61.46 E-value=8.2 Score=25.95 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.5
Q ss_pred ccchHHHHHHHhhcCCEEE-eCch
Q psy6309 63 AYDDRYIVQVATEYDGVIV-SNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IV-SND~ 85 (134)
...|.+++..|.+.|+-+| |+|.
T Consensus 90 ~~~Da~~~a~A~~~~~~~v~T~D~ 113 (121)
T PF01850_consen 90 DFADALIAATAKENGAPLVVTFDK 113 (121)
T ss_dssp SHHHHHHHHHHHHHT-EEE-ESSH
T ss_pred ChhHHHHHHHHHHcCCEEEEECCc
Confidence 4689999999999999777 9985
No 24
>PRK13764 ATPase; Provisional
Probab=59.36 E-value=10 Score=35.31 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=23.5
Q ss_pred cchHHHHHHHhhcCCEEEeCchhhHHHh
Q psy6309 64 YDDRYIVQVATEYDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND~fRD~~~ 91 (134)
..|..++++|.++++++||||.-...+.
T Consensus 90 evD~~I~~~A~~~~~~lvT~D~~l~~~A 117 (602)
T PRK13764 90 EIDALIREVAKELGATLVTSDRVQAEVA 117 (602)
T ss_pred CHHHHHHHHHHHcCCEEEeCCHHHHHHH
Confidence 4677999999999999999998755544
No 25
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=55.70 E-value=14 Score=28.83 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=21.9
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhh
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATE 75 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e 75 (134)
+|. ||+.|+|.-|| .|+.++...-+++=++|.|
T Consensus 102 lqq-LE~~G~V~k~~----~GR~ltp~GrsllD~~a~e 134 (147)
T COG2238 102 LQQ-LEKAGLVEKTP----KGRVLTPKGRSLLDRIATE 134 (147)
T ss_pred HHH-HHHCCceeecC----CCceeCccchhHHHHHHHH
Confidence 666 59999999999 3445554454555555554
No 26
>COG1848 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=54.38 E-value=11 Score=27.05 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.4
Q ss_pred cchHHHHHHHhhcC-CEEEeCch
Q psy6309 64 YDDRYIVQVATEYD-GVIVSNDR 85 (134)
Q Consensus 64 yDDr~il~~A~e~~-G~IVSND~ 85 (134)
..|.+++..|+++| +.|+|.|+
T Consensus 104 ~~DAl~lA~a~~~gi~~i~T~D~ 126 (140)
T COG1848 104 PNDALLLATAKRYGIKAIATFDE 126 (140)
T ss_pred CcHHHHHHHHHHcCcceeeecch
Confidence 58999999999996 89999998
No 27
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=49.37 E-value=9.5 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=28.8
Q ss_pred CCccccccchH------------HHHHHHhhcCCEEEeCchhhHHHh
Q psy6309 57 DGKLQCAYDDR------------YIVQVATEYDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 57 ~gkr~~~yDDr------------~il~~A~e~~G~IVSND~fRD~~~ 91 (134)
.|+|..|||.. =.++.|.+.|--++|-++||.+++
T Consensus 71 kGRRSlCYD~eAl~sRK~~kP~~sa~d~a~~mGieLLtEeqYr~LQ~ 117 (173)
T PF14066_consen 71 KGRRSLCYDREALESRKEHKPENSAVDMAAEMGIELLTEEQYRELQK 117 (173)
T ss_pred CCccccccCHHHHHhhccCCCCccHHHHHHHhhhHhcCHHHHHHHHH
Confidence 45677777753 257899999999999999999987
No 28
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=47.78 E-value=21 Score=28.44 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhh
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATE 75 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e 75 (134)
||. ||+.|+|..+|.. .|+++++..-+++=++|.+
T Consensus 126 LQq-LE~~glVek~~~~--~GR~lT~~Gr~~LD~iA~~ 160 (169)
T PTZ00095 126 CQQ-LEKLGLVEQGPKK--KGRRLTRKGCNFANAFARQ 160 (169)
T ss_pred HHH-HHHCCCEEecCCC--CCCEECHhHHHHHHHHHHH
Confidence 776 5999999998863 4788887777777777765
No 29
>PRK13725 plasmid maintenance protein; Provisional
Probab=47.14 E-value=23 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=20.0
Q ss_pred ccchHHHHHHHhhcCCEEEeCc
Q psy6309 63 AYDDRYIVQVATEYDGVIVSND 84 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND 84 (134)
...|..|...|.++|..+|||+
T Consensus 95 ~~~D~lIAA~Al~~~~~LvT~N 116 (132)
T PRK13725 95 GPFDQMIAGHARSRGLIVVTNN 116 (132)
T ss_pred ChhHHHHHHHHHHCCCEEEECC
Confidence 4579999999999999999996
No 30
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=43.86 E-value=9.2 Score=20.81 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=8.4
Q ss_pred EEEeCchhhHH
Q psy6309 79 VIVSNDRYRDI 89 (134)
Q Consensus 79 ~IVSND~fRD~ 89 (134)
.-.|||.||.+
T Consensus 8 ~p~SNddFrkm 18 (21)
T PF05391_consen 8 KPKSNDDFRKM 18 (21)
T ss_pred CccchHHHHHH
Confidence 44689999876
No 31
>KOG1798|consensus
Probab=42.99 E-value=43 Score=35.37 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=55.3
Q ss_pred cccceeeeeecCcccccCChHHHHHHh------------hhhcCcEEeCCCccc--------CCcccc-ccchHHHHHHH
Q psy6309 15 RVDGKLQCAYDDRYIPFRSPQVFIQLT------------YFVSGILHYTPSRRV--------DGKLQC-AYDDRYIVQVA 73 (134)
Q Consensus 15 ~i~~~~~~~~ddr~I~~~~p~~~lqla------------le~~G~l~~TPsr~~--------~gkr~~-~yDDr~il~~A 73 (134)
.+++|-++|+++--| +|+| |..+||.+..|+..- +|||.+ ||--. ||+.-
T Consensus 804 SMEMAGIvc~TGAnI--------Iq~AR~lVEriGrPLELDTDGIWCilP~SFPEnf~Fk~~n~kkvtiSYPc~-mLN~~ 874 (2173)
T KOG1798|consen 804 SMEMAGIVCLTGANI--------IQMARELVERIGRPLELDTDGIWCILPGSFPENFTFKLKNGKKVTISYPCV-MLNHL 874 (2173)
T ss_pred eeehhheeeccchHH--------HHHHHHHHHHhCCCeeccCCceEEeccCCCccceEEEecCCcEEEEechHH-HHHHH
Confidence 367888999999655 4433 356899999998654 477743 67764 34432
Q ss_pred hhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCC-eEecCCCCC
Q psy6309 74 TEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKE-LLIFPQDPL 121 (134)
Q Consensus 74 ~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd-~fm~pdDpl 121 (134)
-..+ -|||||+.+.+- .|+.=-|-..| +|+=-|.||
T Consensus 875 V~e~---fTN~QYq~L~dp---------~~~~Y~t~SEnSIfFEVDGPY 911 (2173)
T KOG1798|consen 875 VHEG---FTNHQYQELVDP---------VRLTYVTRSENSIFFEVDGPY 911 (2173)
T ss_pred HHhc---cchhhHHHhcCc---------ccceeeecccceEEEEecCce
Confidence 2222 489999998774 23332344455 666667776
No 32
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=42.87 E-value=65 Score=21.69 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=48.1
Q ss_pred CcccCceeecccccccceeeeeecCcccccCCh--HH-----HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHh
Q psy6309 2 SYKSGILHYTPSRRVDGKLQCAYDDRYIPFRSP--QV-----FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVAT 74 (134)
Q Consensus 2 ~~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p--~~-----~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~ 74 (134)
+-|.|.+..... +. -+.++|.+++.|-+... .. +..+...++|-..+.|........+...-+..+++.++
T Consensus 19 ~~ktG~L~v~~~-~~-~~~i~f~~G~iv~A~~~~~~~~~~eal~~ll~w~~G~F~~~~~~~~~~~~i~~~~~~llle~~r 96 (103)
T PF14332_consen 19 SRKTGVLEVQSG-GG-EGRIYFRDGRIVHASSGVLRLQGEEALFELLSWKEGTFEFEPDPPPEPRTINLSTEELLLEALR 96 (103)
T ss_pred cCCeEEEEEEeC-Cc-EEEEEEECCEEEEEEeChhHHHHHHHHHHHHcCCceEEEEcCCCCCcCccCCCCHHHHHHHHHH
Confidence 456677776322 22 24589999988877777 55 33344467888887777665555565666788888887
Q ss_pred hc
Q psy6309 75 EY 76 (134)
Q Consensus 75 e~ 76 (134)
..
T Consensus 97 ~~ 98 (103)
T PF14332_consen 97 RL 98 (103)
T ss_pred HH
Confidence 63
No 33
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=42.80 E-value=48 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.9
Q ss_pred ccchHHHHHHHhhcC-CEEEeCch
Q psy6309 63 AYDDRYIVQVATEYD-GVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~-G~IVSND~ 85 (134)
.+.|.-++++|.+.+ .+|.|||.
T Consensus 51 ~~addci~~~~~~~~~~~VaT~D~ 74 (101)
T PF04900_consen 51 GSADDCILDLAGKNNKYIVATQDK 74 (101)
T ss_pred cCHHHHHHHHhccCCeEEEEecCH
Confidence 367888999999999 89999985
No 34
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=40.91 E-value=57 Score=28.69 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=37.1
Q ss_pred cCcEEeCCCcccCCccccccch-HHHHHHHhhcCCEEEeCchhhHHHhhc
Q psy6309 45 SGILHYTPSRRVDGKLQCAYDD-RYIVQVATEYDGVIVSNDRYRDIMQEN 93 (134)
Q Consensus 45 ~G~l~~TPsr~~~gkr~~~yDD-r~il~~A~e~~G~IVSND~fRD~~~e~ 93 (134)
=..+..||+..-+--...+-+. .-++++|+++|..||-.|-|.++.-+.
T Consensus 227 ~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~ 276 (459)
T COG1167 227 PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDG 276 (459)
T ss_pred CcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCC
Confidence 3578999985444333333333 679999999999999999999998873
No 35
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=37.71 E-value=21 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhh
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATE 75 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e 75 (134)
||. ||+.|+|...|. .|+++++..-+++=++|.+
T Consensus 101 Lqq-LE~~glv~k~~~---~GR~lT~~G~~~lD~iA~~ 134 (139)
T PF01090_consen 101 LQQ-LEKAGLVEKDPK---GGRRLTPKGQRDLDRIAGQ 134 (139)
T ss_dssp HHH-HHHTTSEEEETT---TEEEE-HHHHHHHHHHHHH
T ss_pred HHH-HHHCCCEEecCC---CCCEECHHHHHHHHHHHHH
Confidence 776 599999999993 4677887776776666655
No 36
>COG1487 VapC Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=37.01 E-value=42 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
+..|-+|...|..+|..+||+|.
T Consensus 94 ~~~D~lIAa~A~~~~~~LvT~d~ 116 (133)
T COG1487 94 GLNDLLIAATAIAHGLLLVTRDV 116 (133)
T ss_pred ChHHHHHHHHHHHcCCEEEEcCH
Confidence 35899999999999999999994
No 37
>PF13289 SIR2_2: SIR2-like domain
Probab=36.79 E-value=30 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCEEEeCchhhHHHhhcHHHHHHHhccc
Q psy6309 77 DGVIVSNDRYRDIMQENDKWKATIERRL 104 (134)
Q Consensus 77 ~G~IVSND~fRD~~~e~p~~r~~I~~Rl 104 (134)
+.+|+|.++|.++.+.++.+.+.+++.+
T Consensus 57 ~~~vlt~~~y~~~~~~~~~~~~~l~~~l 84 (143)
T PF13289_consen 57 ESIVLTEDDYEEYYSSNPWFPNFLRSLL 84 (143)
T ss_pred CCEEEcHHHHHHHhhhHHHHHHHHHHHH
Confidence 7889999999999977777777666443
No 38
>KOG3740|consensus
Probab=35.30 E-value=11 Score=35.86 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=43.8
Q ss_pred cccCceeecccccccceeeeeecC-cccccCChHHHHHHh-----hhhcCcEEeCCCcccCCccccccchHHHHHHH
Q psy6309 3 YKSGILHYTPSRRVDGKLQCAYDD-RYIPFRSPQVFIQLT-----YFVSGILHYTPSRRVDGKLQCAYDDRYIVQVA 73 (134)
Q Consensus 3 ~~~g~~~~~p~r~i~~~~~~~~dd-r~I~~~~p~~~lqla-----le~~G~l~~TPsr~~~gkr~~~yDDr~il~~A 73 (134)
|-||+..+ |++.+++.+|.. .+ +.|-.+.. .-.+-+.-.++++-.+||+++.||.|+|.++|
T Consensus 639 m~~~l~~p----G~a~A~~~~~~~~~r-----h~~q~q~~R~QrE~~~~~k~~~s~sQa~n~kk~~~~~~r~~~~l~ 706 (706)
T KOG3740|consen 639 MVHGLQMP----GGAMAVQNFWNAGHR-----HKSQSQADRRQRERLQDMKPQRSQSQAANGKKITTYDYRFMVKLA 706 (706)
T ss_pred HHHHhhCC----Ccchhhccccccccc-----chhHHHHHHHHHHHHHhcccccchHHHhccCchhHHHHHHHhhcC
Confidence 45666666 888888888877 22 44522221 11234556899999999999999999998875
No 39
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=34.21 E-value=59 Score=26.72 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=21.2
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhh
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQE 92 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e 92 (134)
++.+|+|-++.|+ -||.=|.+.|++.|=-+|.-..|++.++|
T Consensus 160 vl~LA~El~a~lv--------------t~D~gi~~~A~~lGi~~i~~~~F~~~Lee 201 (205)
T PF08745_consen 160 VLLLALELDAVLV--------------TDDYGIQNWAEKLGIRFIDARDFPRMLEE 201 (205)
T ss_dssp HHHHHHHHT--EE-----------------HHHHHHHHHTT--EE-----------
T ss_pred HHHHHHHcCCEEE--------------eCCHhHHHHHHHCCCEEEecccccccccc
Confidence 5778888888887 47888999999999999999999988876
No 40
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=32.50 E-value=40 Score=26.83 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred cchHHHHHHHhhcCCEEEeCch
Q psy6309 64 YDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND~ 85 (134)
++|--++.+|...|++|+|.|+
T Consensus 35 ~~d~~i~~i~~~e~rIllTRDr 56 (165)
T COG1656 35 ESDDEIILIAKKEGRILLTRDR 56 (165)
T ss_pred CCcHHHHHHHhcCCeEEEeccH
Confidence 5777889999999999999985
No 41
>COG4113 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.35 E-value=37 Score=25.69 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.9
Q ss_pred ccccchHHHHHHHhhcCCEEEeCch
Q psy6309 61 QCAYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 61 ~~~yDDr~il~~A~e~~G~IVSND~ 85 (134)
++-||=.| +.+|+..|...||+|.
T Consensus 95 lt~YDA~y-ialAe~~g~~l~T~D~ 118 (134)
T COG4113 95 LTVYDALY-IALAERLGLELVTADK 118 (134)
T ss_pred ccHHHHHH-HHHHHHcCCeEEeCCH
Confidence 45566666 8999999999999994
No 42
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=30.37 E-value=69 Score=26.62 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=32.9
Q ss_pred cCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHh
Q psy6309 45 SGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 45 ~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~ 91 (134)
-..+..++...=-|..++...=.-++++|+++|..||+-|=|.|+.-
T Consensus 166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 212 (388)
T PRK07366 166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVF 212 (388)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhccc
Confidence 34566665555556644322225678899999999999999999873
No 43
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=30.18 E-value=25 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=26.6
Q ss_pred cccccchHHHHHHHhhcCCEEEeCchhhHHHhhcH
Q psy6309 60 LQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQEND 94 (134)
Q Consensus 60 r~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e~p 94 (134)
++++|.| +|++.|.+.| .+.+.|+.|.+..|+.
T Consensus 32 ~ivNyG~-~Mle~A~k~g-lve~rD~~Rklp~e~Q 64 (189)
T COG2019 32 KIVNYGD-LMLEIAKKKG-LVEHRDEMRKLPLENQ 64 (189)
T ss_pred eeeeHhH-HHHHHHHHhC-CcccHHHHhcCCHHHH
Confidence 5678999 9999999975 5688999998876643
No 44
>PRK09482 flap endonuclease-like protein; Provisional
Probab=29.75 E-value=85 Score=26.17 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=31.2
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhh-----cCCEEEeCchhhHHHh
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATE-----YDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e-----~~G~IVSND~fRD~~~ 91 (134)
.++..++..|+-++...+. .+|-.|-.+|.+ .+-+|||+| +|+.+
T Consensus 88 ~i~~~l~~~gi~~~~~~g~--------EADDvIatla~~~~~~~~~v~I~S~D--KDl~Q 137 (256)
T PRK09482 88 AIRAAFEELGIDSWHADGN--------EADDLIATLAVKVAQAGHQATIVSTD--KGYCQ 137 (256)
T ss_pred HHHHHHHhCCCCEeccCCc--------CHHHHHHHHHHHHHHCCCeEEEEECC--CCccc
Confidence 5667778899987766652 567677777754 356799999 45443
No 45
>PF13470 PIN_3: PIN domain
Probab=29.62 E-value=66 Score=22.09 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.0
Q ss_pred cccchHHHHHHHhhcC-CEEEeCch
Q psy6309 62 CAYDDRYIVQVATEYD-GVIVSNDR 85 (134)
Q Consensus 62 ~~yDDr~il~~A~e~~-G~IVSND~ 85 (134)
.+.+|.+++..|...+ -+|||+|.
T Consensus 94 ~D~~D~~~la~A~~~~ad~iVT~D~ 118 (119)
T PF13470_consen 94 RDPDDAHVLAAAIAAKADYIVTGDK 118 (119)
T ss_pred CCccHHHHHHHHHHcCCCEEEeCCC
Confidence 4789999999999985 48899884
No 46
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=29.49 E-value=1.9e+02 Score=22.33 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=38.3
Q ss_pred ecccccccceeeeeecCcccccCChHHHHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCch
Q psy6309 10 YTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 10 ~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~ 85 (134)
.++..+.......|||.++ |++.-.++. +.--|.+.|+....+......-...+...|.|.+..+|...+
T Consensus 134 ~~~~~~~kig~~IC~D~~~-----pe~~~~~~~-~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~ 203 (255)
T cd07581 134 VFVVGGVKVGLATCYDLRF-----PELARALAL-AGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQ 203 (255)
T ss_pred EEecCCceEEEEEEecccC-----HHHHHHHHH-CCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcC
Confidence 3444556667889999765 344444443 333466677743222111111224556678888887777643
No 47
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=29.31 E-value=60 Score=26.17 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=32.5
Q ss_pred EEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceecCC
Q psy6309 48 LHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKE 112 (134)
Q Consensus 48 l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd 112 (134)
|+.||... +..|.+|+ .++++.|.++|--+= ...-.-...++. -++|+|||-.+.|
T Consensus 50 vvL~P~ae----~~lSp~D~---~iver~Gi~vvdcSW-~~~~~~f~~l~~-~~~R~LP~LvAaN 105 (179)
T COG2042 50 VVLTPFAE----KALSPADR---DIVERFGITVVDCSW-NRVERVFKKLRG-REHRRLPFLVAAN 105 (179)
T ss_pred eEECCCcc----cccChhhH---HHHHhcCeEEEEccH-HHHHHHHHhcCc-cccccccHhhhcC
Confidence 45666543 55677886 466777777775431 111000122322 2789999998887
No 48
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=28.54 E-value=95 Score=23.98 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=39.7
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhh-HHHhhcHHHHHHHhccc
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYR-DIMQENDKWKATIERRL 104 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fR-D~~~e~p~~r~~I~~Rl 104 (134)
+++..|+...++--|-..++|+||+ | -+.++|.+.+ ||-|- ++|+.-.+..+|++.++
T Consensus 81 lEEv~e~~q~v~~~p~~~F~GerIs-y---aL~K~A~qen-----~D~yEgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 81 LEEVVERDQQVGDKPKALFQGERIS-Y---ALAKLAAQEN-----NDGYEGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred HHHHHHhhhhhhhcccccccccchH-H---HHHHHHhhhc-----CCcchhhHHHHHHHHHHHHHhhc
Confidence 4555577888999999999999887 2 2346666654 56663 66666566666666554
No 49
>KOG2244|consensus
Probab=28.35 E-value=30 Score=32.94 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.8
Q ss_pred ecCCeEecCCCCCCCCC
Q psy6309 109 FVKELLIFPQDPLGRDG 125 (134)
Q Consensus 109 f~gd~fm~pdDplGr~G 125 (134)
++|+..+||+|-|||-|
T Consensus 191 lvgGTYFPP~d~~g~~g 207 (786)
T KOG2244|consen 191 LVGGTYFPPNDNYGRPG 207 (786)
T ss_pred ccCCcccCCCCCCCCcc
Confidence 68999999999999987
No 50
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=28.34 E-value=70 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=23.6
Q ss_pred cchHHHHHHHhhcCCEEEeCc------hhhHHHhhc
Q psy6309 64 YDDRYIVQVATEYDGVIVSND------RYRDIMQEN 93 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND------~fRD~~~e~ 93 (134)
.++.-++++.++.||.||.+| .|.+.+.+.
T Consensus 239 ~~~~~i~~~iE~~G~~VV~~e~c~g~r~~~~~v~~~ 274 (377)
T TIGR03190 239 NDDIAFMAMVESVGATIVIDDQCSGTRYFWNASKPE 274 (377)
T ss_pred CCcHHHHHHHHHCCCEEEEECCCcccccccccCCCC
Confidence 366677899999999999999 666656543
No 51
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=28.08 E-value=62 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=23.7
Q ss_pred HHHhhhhcCcEEeCCCcccCCccc--c--ccchHHHHHHHhh
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQ--C--AYDDRYIVQVATE 75 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~--~--~yDDr~il~~A~e 75 (134)
++. +++.|.|.++|++. .|++. + ..-+..+.+.|++
T Consensus 40 Lkk-m~~~gWi~W~pg~G-RG~~S~L~~l~~~~~~~~~~~~~ 79 (115)
T PF12793_consen 40 LKK-MQEEGWITWQPGRG-RGNRSQLTFLKSPEELLEQQAEE 79 (115)
T ss_pred HHH-HHHCCCeeeeCCCC-CCCCCeeEEeeCHHHHHHHHHHH
Confidence 555 57999999999986 66653 2 2233455566655
No 52
>PF08346 AntA: AntA/AntB antirepressor; InterPro: IPR013557 In Escherichia coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the Bacteriophage 933W.
Probab=27.18 E-value=29 Score=23.60 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=19.5
Q ss_pred HHHhhcHHHHHHHhcccccceecCC
Q psy6309 88 DIMQENDKWKATIERRLLMFNFVKE 112 (134)
Q Consensus 88 D~~~e~p~~r~~I~~RlL~~tf~gd 112 (134)
..++-...+.+||++|...|.|+.|
T Consensus 8 ~~L~v~~~Fs~Wik~ri~~y~f~e~ 32 (71)
T PF08346_consen 8 EFLEVKKRFSTWIKRRIEEYGFVEN 32 (71)
T ss_pred HHHcCCCcHHHHHHHHhhhcCcccC
Confidence 3444456677889999999999997
No 53
>COG3744 PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms]
Probab=26.90 E-value=54 Score=25.04 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=22.0
Q ss_pred ccchHHHHHHHhhcCCEEEeCchh
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDRY 86 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~f 86 (134)
+.-||+|+.-|.++++.++|-|+.
T Consensus 96 DPfDRiiiAqa~~~~~~l~t~D~~ 119 (130)
T COG3744 96 DPFDRIIIAQAQEENITLATVDSV 119 (130)
T ss_pred CchHHHHHHHHHhcCCeEeccccc
Confidence 567999999999999999999976
No 54
>smart00475 53EXOc 5'-3' exonuclease.
Probab=26.48 E-value=1e+02 Score=25.48 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=28.2
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhh-----cCCEEEeCch
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATE-----YDGVIVSNDR 85 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e-----~~G~IVSND~ 85 (134)
.++..++..|+-++...+. .+|-.|-.+|.+ ..-+|||+|.
T Consensus 88 ~~~~~l~~~gi~~i~~~g~--------EADD~iatla~~~~~~g~~~~IvS~Dk 133 (259)
T smart00475 88 LIKELLDALGIPVLEVEGY--------EADDVIATLAKKAEAEGYEVRIVSGDK 133 (259)
T ss_pred HHHHHHHHCCCCEEeeCCc--------CHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5666677899988864431 467677777765 2467999984
No 55
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.19 E-value=52 Score=27.30 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=14.4
Q ss_pred hhHHHhhcHHHHHHHhcccc
Q psy6309 86 YRDIMQENDKWKATIERRLL 105 (134)
Q Consensus 86 fRD~~~e~p~~r~~I~~RlL 105 (134)
..+|++++|+|.++|++...
T Consensus 112 i~~w~~~~pew~~~Ir~~~~ 131 (257)
T PF11348_consen 112 IEEWIDRHPEWADIIRRAAP 131 (257)
T ss_pred HHHHHHHChHHHHHHHhcCC
Confidence 35666678999999886443
No 56
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=25.43 E-value=1.2e+02 Score=24.65 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=42.0
Q ss_pred cCcEEeCCCcccCCccccccchHHHHHHHhhcCCE--------EEeCchhhHHHhhcHHHHHHHh
Q psy6309 45 SGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGV--------IVSNDRYRDIMQENDKWKATIE 101 (134)
Q Consensus 45 ~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~--------IVSND~fRD~~~e~p~~r~~I~ 101 (134)
..-+.++|-...-|.....+.+..+-++|+++||- +|++...|+.+.+.|.++++++
T Consensus 76 ~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~ 140 (255)
T PF04198_consen 76 LPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGGKYYFLPAPAFVDSPELRDALLAEPSIREVLD 140 (255)
T ss_dssp SSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTSEEE---SBSB-SSHHHHHHHHTSHHHHHHHH
T ss_pred CCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCCcEEEEeCCccCCCHHHHHHHHhChHHHHHHH
Confidence 44567777655555544456778899999999994 7899999998888888887654
No 57
>PRK04358 hypothetical protein; Provisional
Probab=24.55 E-value=1.4e+02 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhh
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQE 92 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e 92 (134)
++-+|+|-++.|+ -||.=|.+.|++.|=-+++-..|+..++|
T Consensus 167 vlaLA~ELda~lv--------------TdD~giqn~A~~LGI~~~~~~~F~~~Lee 208 (217)
T PRK04358 167 VLLLAKELDAAVV--------------SADEGIRKWAERLGLRFVDARKFPRMLEE 208 (217)
T ss_pred HHHHHHHhCCEEE--------------eCCHHHHHHHHHcCCeeecHHHHHHHHHH
Confidence 4667777777766 48888999999999999999999999887
No 58
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=24.41 E-value=1.3e+02 Score=25.84 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=41.6
Q ss_pred cEEeCCCcccCC-ccccccchHHHHHHHhhcCCE--------EEeCchhhHHHhhcHHHHHHHh
Q psy6309 47 ILHYTPSRRVDG-KLQCAYDDRYIVQVATEYDGV--------IVSNDRYRDIMQENDKWKATIE 101 (134)
Q Consensus 47 ~l~~TPsr~~~g-kr~~~yDDr~il~~A~e~~G~--------IVSND~fRD~~~e~p~~r~~I~ 101 (134)
-+.+.|...--| .......+..+.++|++.+|- ++||..+|+.+.++|.++++++
T Consensus 140 ~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~ 203 (321)
T COG2390 140 DVKVVQLTGGVGHADGSYNANTIALRLAEKLGAESYLLPAPLVASSPELREALLQEPSVREVLD 203 (321)
T ss_pred CeEEEECCCCCCCCccccCHHHHHHHHHHHhCCcEEeeecCccCCCHHHHHHHHhCcHHHHHHH
Confidence 345555543334 445567788999999999985 8899999999999888888654
No 59
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.32 E-value=1e+02 Score=27.23 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=37.4
Q ss_pred ChHHHHHHhhhhcCcEEeCCCcccCCc-----------------cccccchHHHHHHHhhcCCEEEeC
Q psy6309 33 SPQVFIQLTYFVSGILHYTPSRRVDGK-----------------LQCAYDDRYIVQVATEYDGVIVSN 83 (134)
Q Consensus 33 ~p~~~lqlale~~G~l~~TPsr~~~gk-----------------r~~~yDDr~il~~A~e~~G~IVSN 83 (134)
+|+++-.+|+.+.|+|++.=+-. .|| +|++-.|+ +++-.++..||||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTG-SGKSTtmAaMi~yRN~~s~gHIiTIEDP--IEfih~h~~CIvTQ 179 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATG-SGKSTTMAAMIGYRNKNSTGHIITIEDP--IEFIHKHKRCIVTQ 179 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCC-CCchhhHHHHhcccccCCCCceEEecCh--HHHHhcccceeEEe
Confidence 78889999999999999875532 343 24455677 58999999999996
No 60
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=24.11 E-value=61 Score=27.89 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHhhcCCEEEeCchhhHH
Q psy6309 68 YIVQVATEYDGVIVSNDRYRDI 89 (134)
Q Consensus 68 ~il~~A~e~~G~IVSND~fRD~ 89 (134)
..+++|+++||-|||-|.+.=+
T Consensus 19 lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 19 LAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred HHHHHHHHcCCcEEecchhhhc
Confidence 7799999999999999997643
No 61
>KOG3333|consensus
Probab=22.79 E-value=2.4e+02 Score=22.71 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=53.7
Q ss_pred CcccCceeecccccccceeeeeecCcccccCChHHHHHHhhh--------------------hcCcEEeCCCcccCCccc
Q psy6309 2 SYKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLTYF--------------------VSGILHYTPSRRVDGKLQ 61 (134)
Q Consensus 2 ~~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqlale--------------------~~G~l~~TPsr~~~gkr~ 61 (134)
||=|.+-+-+..+.++|.++++.+.-.|-+.+-+|.++..|+ +.||=.-+|.-+.+-.
T Consensus 58 sywh~lev~~~~~hveg~v~H~~~gvvvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~fm~~~~t~ea~-- 135 (188)
T KOG3333|consen 58 SYWHRLEVIRTQHHVEGLVEHQNGGVVVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINFMVYQPTPEAA-- 135 (188)
T ss_pred hheeEEEEeecccceeeeeeEecCCEEEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcceeccCCChhhc--
Confidence 455777788889999999999999999989988885544443 5677666666443321
Q ss_pred cccchHHHHHHHhhcCCEEEeC
Q psy6309 62 CAYDDRYIVQVATEYDGVIVSN 83 (134)
Q Consensus 62 ~~yDDr~il~~A~e~~G~IVSN 83 (134)
.-+----+.-|.+.||++.-.
T Consensus 136 -~~s~~q~l~~a~~e~Gv~lkE 156 (188)
T KOG3333|consen 136 -ASSSMQRLQSAMTEGGVVLKE 156 (188)
T ss_pred -cchHHHHHHHHHHhCCeeecC
Confidence 111222256677778887654
No 62
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=22.75 E-value=1.5e+02 Score=24.34 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhh
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQE 92 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e 92 (134)
++.+|+|-++.|+ -||-=|.+.|++.|=-+++-..|+..++|
T Consensus 163 vlaLA~ELda~lv--------------TdD~giqn~A~~Lgi~~~~~~~f~~~L~e 204 (206)
T TIGR03875 163 VLLLAKELDAAVV--------------SADEGIRKWAERLGLRFVDARNFPEMLEE 204 (206)
T ss_pred HHHHHHHcCcEEE--------------eCcHHHHHHHHHcCCeeecHHHHHHHHHH
Confidence 4666776666666 48878899999999999888899888776
No 63
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=22.66 E-value=75 Score=23.83 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=8.9
Q ss_pred cchHHHHHHHhhcCCEEEeCc
Q psy6309 64 YDDRYIVQVATEYDGVIVSND 84 (134)
Q Consensus 64 yDDr~il~~A~e~~G~IVSND 84 (134)
-+|-+|++.|++ |=+|||.|
T Consensus 40 aaD~~I~~~~~~-gDiVITqD 59 (130)
T PF02639_consen 40 AADFYIVNHAKP-GDIVITQD 59 (130)
T ss_pred hHHHHHHHcCCC-CCEEEECC
Confidence 344455555444 22444444
No 64
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.66 E-value=54 Score=25.70 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=15.1
Q ss_pred ccchHHHHHHHhhcCCEEEeCchh
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDRY 86 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~f 86 (134)
.-.|.+|+++|++ |-+|||.|=.
T Consensus 54 DaaD~~Iv~~a~~-gDlVVT~Di~ 76 (150)
T COG1671 54 DAADDWIVNLAEK-GDLVVTADIP 76 (150)
T ss_pred chHHHHHHHhCCC-CCEEEECchH
Confidence 3456778887766 5577777643
No 65
>PRK14976 5'-3' exonuclease; Provisional
Probab=22.43 E-value=1.4e+02 Score=24.98 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhc-----CCEEEeCc
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEY-----DGVIVSND 84 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~-----~G~IVSND 84 (134)
.++.+++..|+-++...+ -.+|-.|-.+|.+. ..+|||+|
T Consensus 94 ~i~~~l~~~gi~~~~~~g--------~EADDviatla~~~~~~g~~v~IvS~D 138 (281)
T PRK14976 94 LLKKILKLAGIKWEEQPG--------YEADDLIGSLAKKLSKQNITVLIYSSD 138 (281)
T ss_pred HHHHHHHHCCCCEEecCC--------cCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 556667888988876554 24676777777653 46799998
No 66
>PRK15468 carboxysome structural protein EutS; Provisional
Probab=22.03 E-value=84 Score=23.57 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=30.7
Q ss_pred cccCceeecccccccceeeeeecCcccccCChHHHHHHh---hhhcCcEEeCCCcc
Q psy6309 3 YKSGILHYTPSRRVDGKLQCAYDDRYIPFRSPQVFIQLT---YFVSGILHYTPSRR 55 (134)
Q Consensus 3 ~~~g~~~~~p~r~i~~~~~~~~ddr~I~~~~p~~~lqla---le~~G~l~~TPsr~ 55 (134)
..+=+..|.|.+.|..|-+..-.+..| +.++- ...-|++..||+-.
T Consensus 3 k~RiIQE~VPGKQvTlAHiIa~P~~~i-------y~klGl~~~~AIGIlTiTP~E~ 51 (111)
T PRK15468 3 KERIIQEFVPGKQVTLAHLIAHPGEEL-------AKKIGVPDAGAIGIMTLTPGET 51 (111)
T ss_pred ccceEEeecCCceeeeeeeecCCcHHH-------HHHhCCCccCceEEEEeCcchH
Confidence 344567888999988887777766555 12221 13557899999874
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=21.33 E-value=76 Score=27.79 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.4
Q ss_pred ccchHHHHHHHhhcC---CEEEeCchhhHHHh
Q psy6309 63 AYDDRYIVQVATEYD---GVIVSNDRYRDIMQ 91 (134)
Q Consensus 63 ~yDDr~il~~A~e~~---G~IVSND~fRD~~~ 91 (134)
+-+|.|+|+.+++.. -++|=||+|--+.-
T Consensus 29 daade~ll~~~~~~~~~~~~~i~nd~fGal~~ 60 (378)
T PRK15001 29 EAADEYLLQQLDDTEIRGPVLILNDAFGALSC 60 (378)
T ss_pred ccHHHHHHHHHhhcccCCCEEEEcCchhHHHH
Confidence 557999999998863 69999999977654
No 68
>COG2402 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.04 E-value=73 Score=24.18 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=21.2
Q ss_pred ccchHHHHHHHhhcC-CEEEeCch
Q psy6309 63 AYDDRYIVQVATEYD-GVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~-G~IVSND~ 85 (134)
+.+|....-+|++.| +-|+|.|.
T Consensus 99 df~Da~~~ala~k~g~~~ilSfD~ 122 (135)
T COG2402 99 DFVDATSVALAEKLGILKILSFDS 122 (135)
T ss_pred CHHHHHHHHHHHHcCCCcEEEecc
Confidence 689999999999999 99999984
No 69
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=20.69 E-value=82 Score=29.54 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=24.8
Q ss_pred ccchHHHHHHHhhcCCEEEeCchhhHHHh
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~fRD~~~ 91 (134)
..-|.++-++|.++||+.||.|+-+--+.
T Consensus 93 GEid~miR~vA~e~~a~lVTsD~vQ~~va 121 (604)
T COG1855 93 GEIDAMIREVALEYGATLVTSDRVQRDVA 121 (604)
T ss_pred ccHHHHHHHHHHHhCcEEEechHHHHHHH
Confidence 35789999999999999999998865544
No 70
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=20.59 E-value=2e+02 Score=20.10 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHhhhhcCcEEeCCCcc--cCCccccccch--HHHHHHHhhcCCEEEeC
Q psy6309 39 QLTYFVSGILHYTPSRR--VDGKLQCAYDD--RYIVQVATEYDGVIVSN 83 (134)
Q Consensus 39 qlale~~G~l~~TPsr~--~~gkr~~~yDD--r~il~~A~e~~G~IVSN 83 (134)
...|.++|..+..|+.. .+|. ++++ +..+++-.++|+++.-.
T Consensus 22 a~~L~~~G~~vvnPa~~~~~~~~---~~~~ym~~~l~~L~~cD~i~~l~ 67 (92)
T PF14359_consen 22 AKRLRAKGYEVVNPAELGIPEGL---SWEEYMRICLAMLSDCDAIYMLP 67 (92)
T ss_pred HHHHHHCCCEEeCchhhCCCCCC---CHHHHHHHHHHHHHhCCEEEEcC
Confidence 34456899999999987 4554 4455 67788888999998853
No 71
>PRK08175 aminotransferase; Validated
Probab=20.55 E-value=2.2e+02 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=29.9
Q ss_pred CcEEeC-CCcccCCccccccch---HHHHHHHhhcCCEEEeCchhhHHHh
Q psy6309 46 GILHYT-PSRRVDGKLQCAYDD---RYIVQVATEYDGVIVSNDRYRDIMQ 91 (134)
Q Consensus 46 G~l~~T-Psr~~~gkr~~~yDD---r~il~~A~e~~G~IVSND~fRD~~~ 91 (134)
..|..+ | ..--|. +++. .-++++|+++|..||..|-|.++.-
T Consensus 166 ~~v~i~~p-~NPtG~---~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~ 211 (395)
T PRK08175 166 KMMILGFP-SNPTAQ---CVELEFFEKVVALAKRYDVLVVHDLAYADIVY 211 (395)
T ss_pred eEEEEeCC-CCCCCC---CCCHHHHHHHHHHHHHcCcEEEEecchHhhcc
Confidence 345544 4 233343 4555 6788999999999999999999874
Done!