Query psy6309
Match_columns 134
No_of_seqs 116 out of 169
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 23:05:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6309.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6309hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o4wa_ c.120.1.1 (A:) Hypothe 78.6 0.62 4.5E-05 31.1 2.7 23 63-85 76-98 (125)
2 d2fe1a1 c.120.1.1 (A:1-130) Co 71.0 1.2 8.5E-05 28.2 2.4 22 63-84 97-118 (130)
3 d1v96a1 c.120.1.1 (A:2-149) Hy 68.5 1.6 0.00012 30.0 2.8 23 63-85 94-116 (148)
4 d2v7fa1 a.4.5.84 (A:2-150) Rib 61.5 1.8 0.00013 30.8 2.0 46 38-96 101-146 (149)
5 d2h1ca1 c.120.1.1 (A:1-138) Tr 49.8 5.2 0.00038 25.4 2.6 22 63-84 101-122 (138)
6 d1v8pa_ c.120.1.1 (A:) Hypothe 46.7 5.9 0.00043 26.4 2.6 23 63-85 88-110 (132)
7 d1cmwa2 c.120.1.2 (A:10-173) 5 45.6 15 0.0011 24.9 4.7 45 37-91 89-138 (164)
8 d1xmta_ d.108.1.1 (A:) Hypothe 43.5 6.3 0.00046 25.2 2.2 47 57-103 45-93 (95)
9 d2nvwa1 c.2.1.3 (A:2-154,A:374 38.7 33 0.0024 23.9 5.9 69 46-124 117-197 (237)
10 d1xo1a2 c.120.1.2 (A:19-185) T 37.7 15 0.0011 25.0 3.7 52 44-112 98-154 (167)
11 d1kjwa2 c.37.1.1 (A:526-724) G 29.3 23 0.0017 24.4 3.5 36 71-110 158-193 (199)
12 d1b0na1 a.34.1.1 (A:74-108) Si 28.2 13 0.00096 20.2 1.5 25 69-97 8-32 (35)
13 d1tlta1 c.2.1.3 (A:5-127,A:268 27.8 69 0.005 20.5 5.7 44 65-108 100-143 (164)
14 d1lc5a_ c.67.1.1 (A:) L-threon 26.8 26 0.0019 25.2 3.6 55 38-92 138-192 (355)
15 d1tfra2 c.120.1.2 (A:12-180) T 24.4 57 0.0041 22.2 4.9 41 41-91 104-149 (169)
16 d2jfga1 c.5.1.1 (A:1-93) UDP-N 23.2 54 0.0039 19.4 4.1 30 43-81 63-92 (93)
17 d2j9ga2 c.30.1.1 (A:1-114) Bio 22.5 49 0.0036 21.6 4.1 81 13-111 21-104 (114)
18 d1eyra_ c.68.1.13 (A:) CMP acy 22.3 95 0.0069 20.0 5.9 93 13-121 15-109 (225)
19 d1w8ia_ c.120.1.1 (A:) Hypothe 20.7 23 0.0017 23.4 2.0 23 63-85 100-122 (155)
No 1
>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=78.58 E-value=0.62 Score=31.13 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.1
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
.+.|.-|+++|.+++.+|+|||+
T Consensus 76 ~~~Dd~il~~a~~~~~iv~T~D~ 98 (125)
T d1o4wa_ 76 SEGDPSLIEAAEKYGCILITNDK 98 (125)
T ss_dssp SCSHHHHHHHHHHHTCEEECCCH
T ss_pred CcHHHHHHHHHhhCCeEEEecCH
Confidence 35677889999999999999995
No 2
>d2fe1a1 c.120.1.1 (A:1-130) Conserved hypothetical protein PAE0151 {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=71.00 E-value=1.2 Score=28.18 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.6
Q ss_pred ccchHHHHHHHhhcCCEEEeCc
Q psy6309 63 AYDDRYIVQVATEYDGVIVSND 84 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND 84 (134)
+..|.+++..|.++|+.+||.|
T Consensus 97 ~~~Da~i~A~A~~~~~~l~T~D 118 (130)
T d2fe1a1 97 TVYDAAYVALAEKIGGKLLTLD 118 (130)
T ss_dssp CHHHHHHHHHHHHHTCEEECSC
T ss_pred CccHHHHHHHHHHcCCEEEECC
Confidence 4689999999999999999999
No 3
>d1v96a1 c.120.1.1 (A:2-149) Hypothetical protein PH0500 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=68.48 E-value=1.6 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=21.3
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
+..|.+|...|..+|+.+||+|.
T Consensus 94 ~~~D~lIAAtAi~~~~~LVT~n~ 116 (148)
T d1v96a1 94 DMEDIITATTAIYTNSLLVTDDP 116 (148)
T ss_dssp CHHHHHHHHHHHHHTCEEEESCH
T ss_pred ChhHHHHHHHHHHcCCEEEeCCH
Confidence 57899999999999999999993
No 4
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=61.46 E-value=1.8 Score=30.80 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=34.6
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhhcHHH
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQENDKW 96 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e~p~~ 96 (134)
||. ||+.|+|..+|.+ |+++++-.-+++=++|.+ -..++.+++|++
T Consensus 101 LQq-LE~~glVek~~~~---GR~lT~~G~~~LD~iA~~---------v~~~~~~~~P~L 146 (149)
T d2v7fa1 101 LQQ-LEAAGFVEKVPGK---GRVITPKGRSFLDKIATE---------LKKELEEIIPEL 146 (149)
T ss_dssp HHH-HHHTTSEEEETTT---EEEECHHHHHHHHHHHHH---------HHHHHHHHHHHS
T ss_pred HHH-HHhCCCeeEcCCC---CcEECHHHHHHHHHHHHH---------HHHHHHHhCccc
Confidence 776 5999999999853 788888888888888877 245556666654
No 5
>d2h1ca1 c.120.1.1 (A:1-138) Trafficking protein B {Neisseria gonorrhoeae [TaxId: 485]}
Probab=49.79 E-value=5.2 Score=25.43 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.1
Q ss_pred ccchHHHHHHHhhcCCEEEeCc
Q psy6309 63 AYDDRYIVQVATEYDGVIVSND 84 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND 84 (134)
...|.+|...|.++|..+||+|
T Consensus 101 ~~~D~~IaA~Ai~~~~~LvT~N 122 (138)
T d2h1ca1 101 AAADGYIAATAKQHSLTVATRD 122 (138)
T ss_dssp CHHHHHHHHHHHHHTCEEECSC
T ss_pred chHHHHHHHHHHHcCCEEEECC
Confidence 4579999999999999999987
No 6
>d1v8pa_ c.120.1.1 (A:) Hypothetical protein PAE2754 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=46.73 E-value=5.9 Score=26.39 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.9
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
+.-|.+.+.+|++.|+.++|.|+
T Consensus 88 s~YDA~YlalA~~~~~~L~T~D~ 110 (132)
T d1v8pa_ 88 TFYDASYAYVAESSGLVLVTQDR 110 (132)
T ss_dssp CHHHHHHHHHHHHTTCEEECSCH
T ss_pred ChhhHHHHHHHHHcCCceEccCH
Confidence 34567779999999999999995
No 7
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=45.57 E-value=15 Score=24.85 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHh---hcCC--EEEeCchhhHHHh
Q psy6309 37 FIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVAT---EYDG--VIVSNDRYRDIMQ 91 (134)
Q Consensus 37 ~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~---e~~G--~IVSND~fRD~~~ 91 (134)
+++..+...|+.+....+ .++|=.|-.+|+ +.+. +|||+| +|+.+
T Consensus 89 ~~~~~~~~~g~~~~~~~~--------~EADDvIa~la~~~~~~~~~v~IvS~D--kD~~Q 138 (164)
T d1cmwa2 89 LIKELVDLLGLARLEVPG--------YEADDVLASLAKKAEKEGYEVRILTAD--KDLYQ 138 (164)
T ss_dssp HHHHHHHHTTCEEECCTT--------SCHHHHHHHHHHHHHHTTEEEEEECSS--GGGGG
T ss_pred HHHHHHhhcCceEEEecC--------cchHHHHHHHHHHhccccceEEEecCC--CChHH
Confidence 556666788988876554 357766666654 3343 899999 56655
No 8
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.45 E-value=6.3 Score=25.18 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCccccccchHHHHHHHhhcCCEEEeCchh-hH-HHhhcHHHHHHHhcc
Q psy6309 57 DGKLQCAYDDRYIVQVATEYDGVIVSNDRY-RD-IMQENDKWKATIERR 103 (134)
Q Consensus 57 ~gkr~~~yDDr~il~~A~e~~G~IVSND~f-RD-~~~e~p~~r~~I~~R 103 (134)
.|+-+++-==+.+|++|++.|=.|+.-=-| +. +++++|+|++++..-
T Consensus 45 rGqGia~~Lv~~al~~ar~~g~kV~P~Cpyv~~~~~~khpey~dll~~e 93 (95)
T d1xmta_ 45 RGLGLASHLCVAAFEHASSHSISIIPSCSYVSDTFLPRNPSWKPLIHSE 93 (95)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCEEEECSHHHHHTHHHHCGGGGGGBCTT
T ss_pred CCChHHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHhChhHHHHhHhh
Confidence 555444333367899999999999999999 55 899999998866543
No 9
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=38.68 E-value=33 Score=23.95 Aligned_cols=69 Identities=6% Similarity=0.034 Sum_probs=28.8
Q ss_pred CcEEeCCCcccCCccccccch-HHHHHHHhhcCCE-EE--eCchhhHHHhhcHHHHHHHhc--------ccccceecCCe
Q psy6309 46 GILHYTPSRRVDGKLQCAYDD-RYIVQVATEYDGV-IV--SNDRYRDIMQENDKWKATIER--------RLLMFNFVKEL 113 (134)
Q Consensus 46 G~l~~TPsr~~~gkr~~~yDD-r~il~~A~e~~G~-IV--SND~fRD~~~e~p~~r~~I~~--------RlL~~tf~gd~ 113 (134)
.+++--|--. +.++ .-++++|++.+++ +. .|-+|...+.+ +++.|++ +.+.+++....
T Consensus 117 ~V~~EKPla~-------~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~~~~---~k~~i~~~~~~g~iG~v~~~~~~~~~ 186 (237)
T d2nvwa1 117 YLYVEWALAA-------SVQQAEELYSISQQRANLQTIICLQGRYNSVVGN---ILRIYESIADYHFLGKPESKSSRGPD 186 (237)
T ss_dssp EEEEESSSSS-------SHHHHHHHHHHHHTCTTCEEEEECGGGCCHHHHH---HHHHHHHHHHHHHC------------
T ss_pred eEEEeccccC-------CHHHHHHHHHHHhhcCCeeEEEEECCcCCHHHHH---HHHHHHhchhcCeecCEEEEEEEEcC
Confidence 3677777653 3444 5678899888764 33 34455444333 4455543 44444444443
Q ss_pred EecCCCCCCCC
Q psy6309 114 LIFPQDPLGRD 124 (134)
Q Consensus 114 fm~pdDplGr~ 124 (134)
..++..+..+.
T Consensus 187 ~~~~~~~~~~~ 197 (237)
T d2nvwa1 187 DLFASTKFDKQ 197 (237)
T ss_dssp ------CCCCC
T ss_pred ccccCcchhcc
Confidence 33333344443
No 10
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=37.74 E-value=15 Score=25.02 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=32.2
Q ss_pred hcCcEEeCCCcccCCccccccchHHHHHHHh---hc--CCEEEeCchhhHHHhhcHHHHHHHhcccccceecCC
Q psy6309 44 VSGILHYTPSRRVDGKLQCAYDDRYIVQVAT---EY--DGVIVSNDRYRDIMQENDKWKATIERRLLMFNFVKE 112 (134)
Q Consensus 44 ~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~---e~--~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~gd 112 (134)
..|+-++...+ ..+|=.|-.+|+ +. ..+|||+| +|+++ .|.+++..|+...+
T Consensus 98 ~~~~~~~~~~~--------~EADDiIa~l~~~~~~~~~~v~IvS~D--kD~~Q-------Lv~~~v~~~~~~~k 154 (167)
T d1xo1a2 98 KTTFPTFTIRG--------VEADDMAAYIVKLIGHLYDHVWLISTD--GDWDT-------LLTDKVSRFSFTTR 154 (167)
T ss_dssp HTTSCEECCTT--------BCHHHHHHHHHHHHGGGSSCEEEECSC--GGGGG-------GCBTTEEEECTTTC
T ss_pred hccccEEEecc--------ccchhHHHHHHHHhhcCCCEEEEEeCC--ccHHH-------heeCCEEEEeCCCC
Confidence 45666655544 467767766664 32 34799999 56666 35666666665444
No 11
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.32 E-value=23 Score=24.42 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccceec
Q psy6309 71 QVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFNFV 110 (134)
Q Consensus 71 ~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~tf~ 110 (134)
+++..+|.+|+ ||.+-+.+++ ++++|++-.-.+.|+
T Consensus 158 ~~~~~fd~vI~-Nddle~a~~~---l~~iI~~~~~~~~Wv 193 (199)
T d1kjwa2 158 EFTECFSAIVE-GDSFEEIYHK---VKRVIEDLSGPYIWV 193 (199)
T ss_dssp HHGGGCSEEEC-CSSHHHHHHH---HHHHHHHHSCSEEEE
T ss_pred HhhccCCEEEE-CcCHHHHHHH---HHHHHHHhcCCCeee
Confidence 33444676665 7877766665 888888776666654
No 12
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=28.16 E-value=13 Score=20.17 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=17.2
Q ss_pred HHHHHhhcCCEEEeCchhhHHHhhcHHHH
Q psy6309 69 IVQVATEYDGVIVSNDRYRDIMQENDKWK 97 (134)
Q Consensus 69 il~~A~e~~G~IVSND~fRD~~~e~p~~r 97 (134)
+++-|...| ||-+|||++++= .+|+
T Consensus 8 lVkeAM~SG---vSK~QFrEflef-~kWk 32 (35)
T d1b0na1 8 LVRDAMTSG---VSKKQFREFLDY-QKWR 32 (35)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHcc---CCHHHHHHHHHH-HHHH
Confidence 455666655 799999999873 3443
No 13
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}
Probab=27.78 E-value=69 Score=20.53 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=30.2
Q ss_pred chHHHHHHHhhcCCEEEeCchhhHHHhhcHHHHHHHhcccccce
Q psy6309 65 DDRYIVQVATEYDGVIVSNDRYRDIMQENDKWKATIERRLLMFN 108 (134)
Q Consensus 65 DDr~il~~A~e~~G~IVSND~fRD~~~e~p~~r~~I~~RlL~~t 108 (134)
+-+-|+++|++.|..+..+=++|-+......++++|++-.++-.
T Consensus 100 e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~~~~i~~g~ig~~ 143 (164)
T d1tlta1 100 DAERLVELAARKKLTLMVGFNRRFFVGCARHFIECVQNQTVPQT 143 (164)
T ss_dssp HHHHHHHHHHHTTCCEEEECGGGGHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHcCCcEEEEeccccCHHHHHHHHHHHHCCCCCCE
Confidence 33678999999998887765666444333357777887777543
No 14
>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}
Probab=26.83 E-value=26 Score=25.23 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHhh
Q psy6309 38 IQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQE 92 (134)
Q Consensus 38 lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~e 92 (134)
.+....+-..|..+....--|..+.-.+=.-++++|++++.+||.-|-|.++..+
T Consensus 138 ~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~ 192 (355)
T d1lc5a_ 138 LEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH 192 (355)
T ss_dssp HHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT
T ss_pred eeccccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeee
Confidence 3333344556666665666777444344467889999999999999999988654
No 15
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=24.44 E-value=57 Score=22.18 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=27.5
Q ss_pred hhhhcCcEEeCCCcccCCccccccchHHHHHHHhh---c--CCEEEeCchhhHHHh
Q psy6309 41 TYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATE---Y--DGVIVSNDRYRDIMQ 91 (134)
Q Consensus 41 ale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e---~--~G~IVSND~fRD~~~ 91 (134)
.++..|+.+....+ ..+|=.|-.+|.+ . .-+|||+| +|+.+
T Consensus 104 ~~~~l~~~~~~~~~--------~EADDvIa~la~~~~~~~~~vvIvS~D--kD~~Q 149 (169)
T d1tfra2 104 LKAYMPYIVMDIDK--------YEADDHIAVLVKKFSLEGHKILIISSD--GDFTQ 149 (169)
T ss_dssp HHHHSSSEEECCTT--------CCHHHHHHHHHHHHHHTTCCEEEECCC--GGGGG
T ss_pred HHHHhhhhccccCC--------cccccHHHHHHHHHHHCCCcEEEEeCC--CCHHH
Confidence 44567988877665 4677677766654 2 33899999 56655
No 16
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=23.22 E-value=54 Score=19.42 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=18.4
Q ss_pred hhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEE
Q psy6309 43 FVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIV 81 (134)
Q Consensus 43 e~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IV 81 (134)
.+...++.+|+= +.+. =+++.|.+.|--||
T Consensus 63 ~~~d~vi~SPGi--------~~~~-~~~~~a~~~gi~ii 92 (93)
T d2jfga1 63 MAADLIVASPGI--------ALAH-PSLSAAADAGIEIV 92 (93)
T ss_dssp HHCSEEEECTTS--------CTTS-HHHHHHHHTTCEEE
T ss_pred ccCCEEEECCCC--------CCCC-HHHHHHHHcCCCeE
Confidence 355677777764 2344 35777777766554
No 17
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.52 E-value=49 Score=21.64 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=47.2
Q ss_pred cccccceeeeeecC--cccccCChHHHHHHhhhhcCcEEeCCCcccCCccccccch-HHHHHHHhhcCCEEEeCchhhHH
Q psy6309 13 SRRVDGKLQCAYDD--RYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDD-RYIVQVATEYDGVIVSNDRYRDI 89 (134)
Q Consensus 13 ~r~i~~~~~~~~dd--r~I~~~~p~~~lqlale~~G~l~~TPsr~~~gkr~~~yDD-r~il~~A~e~~G~IVSND~fRD~ 89 (134)
||.++.+.+..|++ +.- ..+++ .+-.+..-|+. ...+|-| .-|++.|++.|+--|--- | -+
T Consensus 21 ~~elgi~tvavys~~D~~~------~h~~~---ade~v~lg~~~-----~~~sYl~~~~Ii~~A~~~~~dAiHPG-y-GF 84 (114)
T d2j9ga2 21 CKELGIKTVAVHSSADRDL------KHVLL---ADETVCIGPAP-----SVKSYLNIPAIISAAEITGAVAIHPG-Y-GF 84 (114)
T ss_dssp HHHHTCEEEEEEEGGGTTC------HHHHH---SSEEEEEECSS-----GGGTTTCHHHHHHHHHHHTCSEEECC-S-ST
T ss_pred HHHhCCceEEEeccccccc------cceec---CCceeecCCCc-----hhhhhcCHHHHHHHHHHhCCceeecc-h-hh
Confidence 45555566666655 433 12333 23334443432 1225655 688999999887655432 2 46
Q ss_pred HhhcHHHHHHHhcccccceecC
Q psy6309 90 MQENDKWKATIERRLLMFNFVK 111 (134)
Q Consensus 90 ~~e~p~~r~~I~~RlL~~tf~g 111 (134)
+.|||+|.+-+++. +.+|+|
T Consensus 85 LSEn~~Fa~~~~~a--gi~FIG 104 (114)
T d2j9ga2 85 LSENANFAEQVERS--GFIFIG 104 (114)
T ss_dssp TTTCHHHHHHHHHT--TCEESS
T ss_pred hhhhHHHHHHHHHC--CCEEEC
Confidence 78999998877766 345654
No 18
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=22.28 E-value=95 Score=19.98 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=49.1
Q ss_pred cccccceeeeeecCcccccCChHHHHHHhhhhcCcEEeCCCcccCCccccccchHHHHHHHhhcCCEEEeCchhhHHHh-
Q psy6309 13 SRRVDGKLQCAYDDRYIPFRSPQVFIQLTYFVSGILHYTPSRRVDGKLQCAYDDRYIVQVATEYDGVIVSNDRYRDIMQ- 91 (134)
Q Consensus 13 ~r~i~~~~~~~~ddr~I~~~~p~~~lqlale~~G~l~~TPsr~~~gkr~~~yDDr~il~~A~e~~G~IVSND~fRD~~~- 91 (134)
|+|+.+|-..-..++.+ -+|.++.+. +.+.+. +-+++.||.-+.++|+++|..+.-+...-..-.
T Consensus 15 S~R~p~K~l~~i~gkpL----i~~~i~~~~-~s~~~~---------~Iiv~td~~~i~~i~~~~~~~~~~~~~~~~~~~~ 80 (225)
T d1eyra_ 15 SKGLPLKNLRKMNGISL----LGHTINAAI-SSKCFD---------RIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTA 80 (225)
T ss_dssp CSSSTTGGGCEETTEEH----HHHHHHHHH-HHTCCS---------EEEEEESCHHHHHHHHHTTCEEEECCHHHHSTTC
T ss_pred CcCCCCccccccCCeEH----HHHHHHHHH-HcCCCc---------eEEEeeccchhhhhhhhhcceeeeeccccccccc
Confidence 35666676666667433 245577765 333211 123356777888999999988766533211111
Q ss_pred -hcHHHHHHHhcccccceecCCeEecCCCCC
Q psy6309 92 -ENDKWKATIERRLLMFNFVKELLIFPQDPL 121 (134)
Q Consensus 92 -e~p~~r~~I~~RlL~~tf~gd~fm~pdDpl 121 (134)
....++..++.--..+..+ .++.|+-||
T Consensus 81 ~~~~~~~~~~~~~~~~~d~i--i~~~~~~P~ 109 (225)
T d1eyra_ 81 SSISGVIHALETIGSNSGTV--TLLQPTSPL 109 (225)
T ss_dssp CHHHHHHHHHHHHTCCSEEE--EECCTTCTT
T ss_pred cchhhccccccccccccceE--EEeeccccc
Confidence 1123444444433333322 455667665
No 19
>d1w8ia_ c.120.1.1 (A:) Hypothetical protein AF1683 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.73 E-value=23 Score=23.44 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.9
Q ss_pred ccchHHHHHHHhhcCCEEEeCch
Q psy6309 63 AYDDRYIVQVATEYDGVIVSNDR 85 (134)
Q Consensus 63 ~yDDr~il~~A~e~~G~IVSND~ 85 (134)
+..|.+++.+|++.++-|+|=|+
T Consensus 100 sftDa~~~alA~~l~i~i~TfD~ 122 (155)
T d1w8ia_ 100 SYTDAISEVVAEELKLKLISYDS 122 (155)
T ss_dssp CHHHHHHHHHHHHHTCEEECSCT
T ss_pred CHHHHHHHHHHHHcCCCEEEecC
Confidence 57899999999999999999883
Done!