RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6309
         (134 letters)



>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein
          ThiS {Bacillus subtilis [TaxId: 1423]}
          Length = 65

 Score = 25.7 bits (57), Expect = 0.58
 Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 72 VATEYDGVIVSNDRYRDIM-QENDK 95
          V  E +  I+  +RY ++   + D 
Sbjct: 32 VIVERNKEIIGKERYHEVELCDRDV 56


>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675
          {Thermus thermophilus [TaxId: 274]}
          Length = 63

 Score = 25.3 bits (56), Expect = 0.86
 Identities = 4/25 (16%), Positives = 7/25 (28%), Gaps = 1/25 (4%)

Query: 72 VATEYDGVIVSNDRYRDIM-QENDK 95
          VA   +          D   ++ D 
Sbjct: 30 VAVLLNEEAFLGLEVPDRPLRDGDV 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,615
Number of extensions: 24427
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)