Query psy631
Match_columns 110
No_of_seqs 158 out of 1423
Neff 11.4
Searched_HMMs 46136
Date Fri Aug 16 23:05:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3216|consensus 99.9 2.5E-22 5.4E-27 108.4 10.8 108 1-109 1-110 (163)
2 PRK10146 aminoalkylphosphonic 99.7 6.8E-17 1.5E-21 89.1 9.0 101 1-109 1-102 (144)
3 PRK10140 putative acetyltransf 99.7 1.7E-16 3.6E-21 89.1 10.2 104 1-109 1-104 (162)
4 PTZ00330 acetyltransferase; Pr 99.7 5.8E-16 1.3E-20 85.7 10.8 99 3-109 6-108 (147)
5 PHA00673 acetyltransferase dom 99.7 5.7E-16 1.2E-20 85.5 10.0 98 8-110 11-112 (154)
6 PRK03624 putative acetyltransf 99.7 1.2E-15 2.6E-20 83.5 9.8 92 2-109 1-94 (140)
7 PF13527 Acetyltransf_9: Acety 99.7 1.1E-15 2.5E-20 82.7 8.0 95 5-109 1-98 (127)
8 PHA01807 hypothetical protein 99.6 1.3E-14 2.8E-19 80.7 8.8 96 7-109 7-107 (153)
9 PF13673 Acetyltransf_10: Acet 99.6 2.9E-14 6.3E-19 76.0 9.9 84 13-109 1-90 (117)
10 PLN02706 glucosamine 6-phospha 99.6 4.4E-14 9.6E-19 78.5 10.2 102 2-109 5-111 (150)
11 TIGR03827 GNAT_ablB putative b 99.6 3.5E-14 7.5E-19 85.7 10.3 95 3-109 115-209 (266)
12 COG1247 Sortase and related ac 99.6 5.2E-14 1.1E-18 78.9 10.0 105 4-110 2-108 (169)
13 PRK07757 acetyltransferase; Pr 99.6 8.3E-14 1.8E-18 77.6 10.7 90 4-109 2-91 (152)
14 PRK07922 N-acetylglutamate syn 99.6 3.8E-14 8.2E-19 80.3 9.1 92 2-109 4-96 (169)
15 COG3153 Predicted acetyltransf 99.6 1.1E-13 2.4E-18 77.7 10.2 100 1-109 1-101 (171)
16 PRK09831 putative acyltransfer 99.5 2.2E-14 4.9E-19 79.5 6.4 90 4-109 1-98 (147)
17 PRK09491 rimI ribosomal-protei 99.5 1.5E-13 3.3E-18 76.0 9.5 88 4-109 2-89 (146)
18 PRK01346 hypothetical protein; 99.5 1.1E-13 2.3E-18 88.0 9.7 98 1-109 4-105 (411)
19 TIGR02382 wecD_rffC TDP-D-fuco 99.5 3.4E-13 7.4E-18 77.8 10.5 102 3-110 43-150 (191)
20 PRK10514 putative acetyltransf 99.5 1.2E-13 2.6E-18 76.3 8.3 93 4-109 2-95 (145)
21 TIGR02406 ectoine_EctA L-2,4-d 99.5 2.5E-13 5.3E-18 76.2 8.5 91 6-109 1-92 (157)
22 PF13508 Acetyltransf_7: Acety 99.5 1.4E-13 3.1E-18 68.7 6.7 50 53-109 3-52 (79)
23 PRK12308 bifunctional arginino 99.5 4.5E-13 9.7E-18 88.8 10.1 92 2-109 462-553 (614)
24 PF13523 Acetyltransf_8: Acety 99.5 4.4E-13 9.6E-18 74.6 8.1 99 6-109 1-104 (152)
25 TIGR03448 mycothiol_MshD mycot 99.5 9.3E-13 2E-17 80.3 9.7 93 7-109 4-96 (292)
26 KOG3396|consensus 99.5 9.7E-13 2.1E-17 70.3 8.2 100 4-109 7-111 (150)
27 TIGR03103 trio_acet_GNAT GNAT- 99.5 1.6E-12 3.4E-17 85.2 10.8 97 3-109 82-181 (547)
28 PF00583 Acetyltransf_1: Acety 99.5 6.5E-13 1.4E-17 66.8 7.1 50 58-109 1-51 (83)
29 PRK10314 putative acyltransfer 99.5 2.7E-12 5.8E-17 71.7 9.8 53 53-109 48-100 (153)
30 TIGR01575 rimI ribosomal-prote 99.4 2.8E-12 6E-17 69.4 9.6 80 13-109 1-80 (131)
31 PRK10562 putative acetyltransf 99.4 1.2E-12 2.7E-17 72.4 8.3 90 6-109 2-94 (145)
32 PLN02825 amino-acid N-acetyltr 99.4 1.4E-12 3E-17 84.4 9.3 90 5-109 369-458 (515)
33 COG1246 ArgA N-acetylglutamate 99.4 2.1E-12 4.5E-17 70.8 8.1 90 5-109 2-91 (153)
34 TIGR01686 FkbH FkbH-like domai 99.4 6.1E-12 1.3E-16 77.8 11.0 96 2-109 185-283 (320)
35 PRK10975 TDP-fucosamine acetyl 99.4 2.3E-12 5E-17 74.5 8.6 100 4-109 47-152 (194)
36 TIGR01890 N-Ac-Glu-synth amino 99.4 1.1E-12 2.3E-17 84.0 7.8 91 4-109 283-373 (429)
37 PRK05279 N-acetylglutamate syn 99.4 1.9E-12 4.1E-17 83.1 8.6 91 4-109 295-385 (441)
38 PF13420 Acetyltransf_4: Acety 99.4 1E-11 2.2E-16 69.3 9.3 98 6-109 1-102 (155)
39 PRK13688 hypothetical protein; 99.4 3.3E-12 7.1E-17 71.4 6.5 58 50-109 42-105 (156)
40 KOG3235|consensus 99.3 4.7E-12 1E-16 69.5 5.4 95 4-109 2-97 (193)
41 COG0456 RimI Acetyltransferase 99.3 2.3E-11 5E-16 69.1 8.1 99 3-109 11-117 (177)
42 PRK15130 spermidine N1-acetylt 99.3 4.9E-11 1.1E-15 68.5 8.9 99 3-109 6-108 (186)
43 KOG3139|consensus 99.3 1.5E-10 3.2E-15 63.8 10.0 60 48-110 51-111 (165)
44 TIGR03448 mycothiol_MshD mycot 99.3 2.3E-10 5E-15 69.9 11.4 101 4-109 150-252 (292)
45 PRK10151 ribosomal-protein-L7/ 99.2 2.7E-10 5.9E-15 65.0 9.1 101 4-109 11-118 (179)
46 PF13302 Acetyltransf_3: Acety 99.2 1.8E-10 4E-15 63.2 7.9 102 4-109 2-109 (142)
47 PRK10809 ribosomal-protein-S5- 99.2 7.4E-10 1.6E-14 64.0 9.9 102 4-109 18-129 (194)
48 cd04301 NAT_SF N-Acyltransfera 99.1 3E-10 6.6E-15 53.6 5.8 50 56-109 2-51 (65)
49 TIGR03585 PseH pseudaminic aci 99.1 1E-09 2.2E-14 61.2 7.8 97 5-109 2-101 (156)
50 PF04958 AstA: Arginine N-succ 99.1 1.8E-09 3.8E-14 66.8 9.4 104 3-106 1-144 (342)
51 PRK10456 arginine succinyltran 99.0 5.4E-09 1.2E-13 64.6 9.4 101 4-106 2-142 (344)
52 cd02169 Citrate_lyase_ligase C 99.0 1.7E-09 3.7E-14 66.2 6.4 46 53-109 6-51 (297)
53 KOG2488|consensus 99.0 1.3E-08 2.9E-13 57.7 9.3 68 36-109 78-146 (202)
54 PF14542 Acetyltransf_CG: GCN5 99.0 3.5E-09 7.7E-14 52.7 5.9 46 57-109 3-48 (78)
55 TIGR03245 arg_AOST_alph argini 98.9 2.7E-08 5.8E-13 61.4 9.2 101 5-106 1-141 (336)
56 TIGR03243 arg_catab_AOST argin 98.9 2.5E-08 5.5E-13 61.5 9.0 100 5-106 1-140 (335)
57 TIGR03244 arg_catab_AstA argin 98.9 3.5E-08 7.5E-13 61.0 8.8 100 5-106 1-140 (336)
58 COG2153 ElaA Predicted acyltra 98.9 9.9E-09 2.1E-13 55.9 5.4 54 52-109 49-102 (155)
59 PF12568 DUF3749: Acetyltransf 98.8 2.1E-07 4.6E-12 49.9 9.8 53 50-109 35-87 (128)
60 COG3981 Predicted acetyltransf 98.8 2.7E-08 5.8E-13 55.7 6.5 106 1-109 1-123 (174)
61 TIGR00124 cit_ly_ligase [citra 98.8 3.1E-08 6.6E-13 61.7 7.3 46 53-109 31-76 (332)
62 COG2388 Predicted acetyltransf 98.8 3.6E-08 7.9E-13 50.9 5.1 53 51-109 13-65 (99)
63 PF08445 FR47: FR47-like prote 98.7 8E-08 1.7E-12 48.7 4.7 26 84-109 22-47 (86)
64 PF13718 GNAT_acetyltr_2: GNAT 98.6 5.4E-07 1.2E-11 52.1 7.9 67 38-109 15-116 (196)
65 COG3393 Predicted acetyltransf 98.6 2.3E-07 5E-12 55.4 5.4 43 63-109 185-227 (268)
66 KOG3234|consensus 98.5 3.5E-07 7.5E-12 50.6 5.0 93 5-109 3-95 (173)
67 COG3138 AstA Arginine/ornithin 98.5 9.1E-07 2E-11 53.4 6.8 101 4-106 2-142 (336)
68 PF12746 GNAT_acetyltran: GNAT 98.5 4.3E-06 9.3E-11 50.7 9.3 49 54-109 166-214 (265)
69 KOG3138|consensus 98.5 3.2E-07 6.9E-12 52.6 4.1 93 4-109 17-115 (187)
70 PF13480 Acetyltransf_6: Acety 98.3 3.8E-05 8.3E-10 41.9 9.6 92 10-109 27-120 (142)
71 PF13880 Acetyltransf_13: ESCO 98.2 1.5E-06 3.3E-11 42.0 2.9 26 84-109 6-31 (70)
72 KOG3397|consensus 98.2 2E-05 4.4E-10 44.6 6.9 45 63-109 65-109 (225)
73 COG1670 RimL Acetyltransferase 98.2 0.0001 2.3E-09 41.8 10.1 45 64-109 77-121 (187)
74 COG5628 Predicted acetyltransf 98.1 1.4E-05 3E-10 42.4 5.2 53 55-109 39-91 (143)
75 TIGR01211 ELP3 histone acetylt 98.1 9.5E-06 2.1E-10 53.6 5.3 56 54-109 412-483 (522)
76 PF08444 Gly_acyl_tr_C: Aralky 98.1 6.7E-06 1.5E-10 41.6 3.2 40 62-109 6-45 (89)
77 PF06852 DUF1248: Protein of u 97.9 0.00087 1.9E-08 38.6 10.1 44 63-106 55-101 (181)
78 COG0454 WecD Histone acetyltra 97.8 1.4E-05 2.9E-10 41.7 2.1 21 89-109 87-107 (156)
79 PF01233 NMT: Myristoyl-CoA:pr 97.8 0.0013 2.9E-08 36.9 12.2 76 33-109 57-136 (162)
80 PF05301 Mec-17: Touch recepto 97.8 0.00037 8E-09 37.2 7.1 46 64-109 18-72 (120)
81 COG1444 Predicted P-loop ATPas 97.8 0.00017 3.7E-09 49.5 7.0 60 49-109 466-557 (758)
82 COG3375 Uncharacterized conser 97.7 0.00053 1.2E-08 40.5 7.2 93 2-104 1-95 (266)
83 cd04264 DUF619-NAGS DUF619 dom 97.7 0.00042 9E-09 36.0 6.0 45 63-109 16-60 (99)
84 KOG4144|consensus 97.6 3.7E-05 7.9E-10 42.7 1.3 45 63-107 70-125 (190)
85 KOG4135|consensus 97.5 0.005 1.1E-07 34.3 9.4 105 4-109 14-133 (185)
86 COG3818 Predicted acetyltransf 97.4 0.00011 2.3E-09 39.8 2.1 93 2-108 6-109 (167)
87 PF01853 MOZ_SAS: MOZ/SAS fami 97.4 0.0015 3.2E-08 37.8 6.4 25 83-107 80-104 (188)
88 cd04265 DUF619-NAGS-U DUF619 d 97.4 0.0012 2.7E-08 34.3 5.6 44 63-109 17-60 (99)
89 KOG4601|consensus 97.3 0.0032 7E-08 37.4 7.5 46 64-109 81-134 (264)
90 KOG2779|consensus 96.9 0.011 2.4E-07 37.5 7.3 76 33-109 114-193 (421)
91 COG4552 Eis Predicted acetyltr 96.9 0.0011 2.3E-08 41.8 2.7 54 54-109 40-96 (389)
92 COG3053 CitC Citrate lyase syn 96.8 0.021 4.6E-07 35.5 7.9 38 63-109 45-82 (352)
93 PF02799 NMT_C: Myristoyl-CoA: 96.8 0.017 3.6E-07 33.6 7.0 69 6-78 31-99 (190)
94 KOG2747|consensus 96.8 0.0032 6.9E-08 40.3 4.4 25 84-108 261-285 (396)
95 PF04377 ATE_C: Arginine-tRNA- 96.8 0.03 6.6E-07 30.6 8.6 62 38-107 25-86 (128)
96 PLN03238 probable histone acet 96.7 0.0066 1.4E-07 37.4 5.3 41 64-108 140-180 (290)
97 PF13444 Acetyltransf_5: Acety 96.7 0.015 3.4E-07 30.2 6.0 53 51-105 28-100 (101)
98 PLN03239 histone acetyltransfe 96.5 0.01 2.2E-07 37.6 5.3 25 84-108 214-238 (351)
99 PTZ00064 histone acetyltransfe 96.5 0.0075 1.6E-07 39.8 4.6 41 64-108 369-409 (552)
100 KOG2696|consensus 96.5 0.0031 6.7E-08 40.0 2.8 44 66-109 200-243 (403)
101 PF04768 DUF619: Protein of un 96.4 0.072 1.6E-06 30.6 8.2 82 13-109 33-114 (170)
102 PRK13834 putative autoinducer 96.2 0.11 2.3E-06 30.8 8.1 43 53-96 53-112 (207)
103 PLN00104 MYST -like histone ac 96.2 0.011 2.4E-07 38.7 4.1 40 64-107 291-330 (450)
104 PF00765 Autoind_synth: Autoin 96.2 0.055 1.2E-06 31.4 6.6 57 51-109 43-122 (182)
105 KOG2779|consensus 96.0 0.046 1E-06 34.8 6.1 69 6-78 263-331 (421)
106 COG5027 SAS2 Histone acetyltra 95.5 0.015 3.3E-07 36.7 2.7 24 84-107 263-286 (395)
107 PRK01305 arginyl-tRNA-protein 95.5 0.3 6.4E-06 29.7 11.3 86 14-107 105-191 (240)
108 KOG2036|consensus 94.8 0.026 5.7E-07 39.2 2.4 26 84-109 615-640 (1011)
109 TIGR03694 exosort_acyl putativ 94.2 0.73 1.6E-05 28.1 8.4 45 54-98 56-126 (241)
110 PF04339 DUF482: Protein of un 94.0 0.46 1E-05 30.8 6.5 65 10-79 211-275 (370)
111 KOG3014|consensus 93.9 0.86 1.9E-05 27.8 8.1 27 83-109 183-209 (257)
112 COG5630 ARG2 Acetylglutamate s 93.8 0.93 2E-05 29.6 7.4 80 13-108 346-426 (495)
113 COG5092 NMT1 N-myristoyl trans 93.7 1.1 2.5E-05 28.5 8.1 102 7-109 85-191 (451)
114 KOG3698|consensus 93.4 0.28 6.1E-06 33.6 4.9 99 4-106 680-787 (891)
115 COG2401 ABC-type ATPase fused 93.4 0.056 1.2E-06 35.7 1.7 26 84-109 242-267 (593)
116 TIGR03019 pepcterm_femAB FemAB 93.1 1.4 3.1E-05 27.9 9.5 88 11-109 157-245 (330)
117 cd04266 DUF619-NAGS-FABP DUF61 92.4 0.93 2E-05 24.1 5.7 47 63-109 17-66 (108)
118 COG3882 FkbH Predicted enzyme 91.9 0.72 1.6E-05 31.1 5.2 98 2-109 412-512 (574)
119 PRK15312 antimicrobial resista 91.9 0.68 1.5E-05 29.0 4.8 97 5-105 156-252 (298)
120 COG3916 LasI N-acyl-L-homoseri 90.4 2.5 5.5E-05 25.2 6.4 39 53-93 52-108 (209)
121 PF07395 Mig-14: Mig-14; Inte 90.0 0.99 2.1E-05 27.9 4.3 95 5-105 128-222 (264)
122 cd03173 DUF619-like DUF619 dom 86.2 3.4 7.4E-05 21.6 5.8 43 63-109 17-59 (98)
123 COG5092 NMT1 N-myristoyl trans 84.5 2.1 4.5E-05 27.4 3.6 68 6-76 261-332 (451)
124 PRK04531 acetylglutamate kinas 81.6 7.9 0.00017 25.7 5.5 42 63-109 295-336 (398)
125 PF13530 SCP2_2: Sterol carrie 76.1 14 0.00031 22.1 6.9 56 38-95 10-66 (218)
126 PF11039 DUF2824: Protein of u 75.9 11 0.00025 20.9 6.3 41 50-97 35-75 (151)
127 PF03376 Adeno_E3B: Adenovirus 75.8 1.2 2.6E-05 21.2 0.5 13 92-104 53-65 (67)
128 PF02474 NodA: Nodulation prot 74.8 3.5 7.7E-05 24.0 2.2 22 83-104 85-106 (196)
129 COG2994 HlyC ACP:hemolysin acy 69.7 18 0.00039 20.4 5.5 44 31-76 31-74 (148)
130 PF06559 DCD: 2'-deoxycytidine 67.4 5.5 0.00012 25.8 2.1 34 63-100 323-356 (364)
131 PRK00756 acyltransferase NodA; 66.5 7 0.00015 22.7 2.2 22 83-104 85-106 (196)
132 PF09390 DUF1999: Protein of u 64.3 24 0.00053 20.0 8.5 81 4-94 1-94 (161)
133 PRK14852 hypothetical protein; 64.3 61 0.0013 24.6 7.5 97 5-107 30-145 (989)
134 COG5270 PUA domain (predicted 63.8 12 0.00027 22.0 2.9 21 54-76 164-184 (202)
135 COG1658 Small primase-like pro 60.9 6.6 0.00014 21.6 1.4 20 89-108 60-79 (127)
136 COG1243 ELP3 Histone acetyltra 60.3 5.5 0.00012 27.0 1.2 57 51-109 402-476 (515)
137 cd01027 TOPRIM_RNase_M5_like T 57.8 8.3 0.00018 19.3 1.4 20 89-108 50-69 (81)
138 PF11124 Pho86: Inorganic phos 56.3 52 0.0011 21.2 6.2 53 54-109 171-225 (304)
139 PRK01346 hypothetical protein; 54.8 60 0.0013 21.4 8.7 77 15-95 169-254 (411)
140 COG3146 Uncharacterized protei 53.2 64 0.0014 21.3 5.4 31 50-82 263-293 (387)
141 cd04263 DUF619-NAGK-FABP DUF61 50.7 37 0.0008 17.8 5.7 28 82-109 32-59 (98)
142 PF02794 HlyC: RTX toxin acylt 49.1 46 0.001 18.5 6.1 38 35-75 18-55 (133)
143 PF00571 CBS: CBS domain CBS d 44.2 24 0.00053 15.5 1.8 18 53-72 31-48 (57)
144 KOG2535|consensus 42.3 14 0.00031 24.3 1.0 17 93-109 497-513 (554)
145 PHA02324 hypothetical protein 41.6 12 0.00025 16.3 0.4 9 91-99 38-46 (47)
146 PF04919 DUF655: Protein of un 39.7 16 0.00034 21.5 0.8 11 99-109 123-133 (181)
147 PF08110 Antimicrobial15: Ocel 39.1 24 0.00051 12.3 1.2 12 98-109 6-17 (19)
148 PHA01733 hypothetical protein 39.0 34 0.00073 19.6 2.0 63 3-74 2-66 (153)
149 PRK04017 hypothetical protein; 38.3 27 0.00058 19.5 1.5 20 89-108 70-89 (132)
150 PF05580 Peptidase_S55: SpoIVB 37.2 47 0.001 20.3 2.5 14 86-99 196-209 (218)
151 KOG1489|consensus 36.8 23 0.0005 23.1 1.3 20 91-110 255-274 (366)
152 PF09924 DUF2156: Uncharacteri 36.4 1.1E+02 0.0024 19.2 7.8 94 5-109 134-231 (299)
153 PF12294 DUF3626: Protein of u 35.4 10 0.00023 24.0 -0.3 22 85-106 190-211 (297)
154 COG0742 N6-adenine-specific me 34.3 54 0.0012 19.5 2.5 18 86-104 115-132 (187)
155 smart00116 CBS Domain in cysta 33.8 40 0.00086 13.3 2.2 17 54-72 25-41 (49)
156 PF08348 PAS_6: YheO-like PAS 31.9 91 0.002 16.9 3.3 14 63-76 93-106 (118)
157 PF05865 Cypo_polyhedrin: Cypo 31.8 1.1E+02 0.0024 17.8 4.4 44 63-106 156-199 (248)
158 COG3668 ParE Plasmid stabiliza 31.7 22 0.00047 18.2 0.5 22 1-22 1-22 (98)
159 PHA02456 zinc metallopeptidase 31.6 39 0.00084 18.3 1.4 21 84-104 63-83 (141)
160 PF12162 STAT1_TAZ2bind: STAT1 29.8 24 0.00052 13.1 0.4 14 7-20 8-21 (23)
161 PF14827 Cache_3: Sensory doma 29.1 87 0.0019 16.5 2.6 14 62-75 99-112 (116)
162 PF07981 Plasmod_MYXSPDY: Plas 29.0 17 0.00037 12.3 -0.1 6 90-95 2-7 (17)
163 COG0536 Obg Predicted GTPase [ 28.5 35 0.00076 22.5 1.1 20 91-110 218-237 (369)
164 smart00278 HhH1 Helix-hairpin- 28.3 42 0.00092 12.4 1.0 12 98-109 7-18 (26)
165 PRK05031 tRNA (uracil-5-)-meth 26.8 66 0.0014 21.1 2.2 21 87-109 290-310 (362)
166 KOG3344|consensus 26.5 18 0.00038 20.3 -0.3 14 89-102 135-148 (150)
167 PF02388 FemAB: FemAB family; 26.4 2.1E+02 0.0045 19.3 4.5 54 3-60 185-238 (406)
168 PHA00432 internal virion prote 26.0 1.3E+02 0.0029 16.9 3.8 16 53-70 37-52 (137)
169 PF06394 Pepsin-I3: Pepsin inh 25.4 66 0.0014 16.1 1.6 24 4-27 35-58 (76)
170 PF08104 Antimicrobial_9: Pone 25.3 51 0.0011 11.9 1.2 11 98-108 10-20 (24)
171 PF13862 BCIP: p21-C-terminal 25.3 1.6E+02 0.0034 17.5 6.6 64 4-75 7-71 (194)
172 TIGR02143 trmA_only tRNA (urac 25.1 78 0.0017 20.7 2.3 21 87-109 281-301 (353)
173 PRK10909 rsmD 16S rRNA m(2)G96 24.7 1.1E+02 0.0024 18.3 2.7 22 86-108 122-143 (199)
174 PHA01707 dut 2'-deoxyuridine 5 24.6 84 0.0018 18.0 2.1 15 84-98 92-106 (158)
175 PF11192 DUF2977: Protein of u 24.5 97 0.0021 14.8 2.3 12 63-74 8-19 (62)
176 cd04605 CBS_pair_MET2_assoc Th 23.4 1.1E+02 0.0025 15.2 3.4 18 54-73 27-44 (110)
177 PF02941 FeThRed_A: Ferredoxin 23.3 27 0.00059 16.9 -0.0 12 89-100 13-24 (67)
178 PF14097 SpoVAE: Stage V sporu 23.1 95 0.0021 18.3 2.1 18 91-108 60-77 (180)
179 PF11798 IMS_HHH: IMS family H 22.8 72 0.0016 12.7 1.5 10 99-108 18-27 (32)
180 COG5428 Uncharacterized conser 22.7 1.1E+02 0.0025 14.9 2.1 14 62-75 38-51 (69)
181 PF06649 DUF1161: Protein of u 22.1 65 0.0014 14.8 1.1 10 63-72 34-43 (52)
182 PF13045 DUF3905: Protein of u 22.1 33 0.00071 17.1 0.1 10 93-102 16-25 (84)
183 cd04619 CBS_pair_6 The CBS dom 21.8 1.3E+02 0.0028 15.3 3.5 19 53-73 25-43 (114)
184 PF08251 Mastoparan_2: Mastopa 21.8 50 0.0011 10.5 0.8 7 100-106 6-12 (14)
185 PF04759 DUF617: Protein of un 21.8 1.6E+02 0.0035 17.2 2.8 19 53-73 72-90 (166)
186 PF07299 FBP: Fibronectin-bind 21.8 90 0.0019 19.0 1.9 25 49-75 121-145 (208)
187 PF02268 TFIIA_gamma_N: Transc 21.7 73 0.0016 14.4 1.2 15 94-108 5-19 (49)
188 TIGR00334 5S_RNA_mat_M5 ribonu 21.6 65 0.0014 18.9 1.3 19 89-107 52-70 (174)
189 PRK13559 hypothetical protein; 21.3 60 0.0013 20.7 1.2 20 90-109 315-334 (361)
190 PRK14719 bifunctional RNAse/5- 21.2 82 0.0018 20.8 1.8 17 92-108 75-91 (360)
191 TIGR03527 selenium_YedF seleni 20.7 1.3E+02 0.0027 18.0 2.4 22 88-109 87-111 (194)
192 KOG0524|consensus 20.2 1E+02 0.0022 19.8 2.0 21 89-109 292-312 (359)
193 PF12324 HTH_15: Helix-turn-he 20.1 37 0.0008 17.0 0.1 7 63-69 70-76 (77)
No 1
>KOG3216|consensus
Probab=99.90 E-value=2.5e-22 Score=108.45 Aligned_cols=108 Identities=37% Similarity=0.636 Sum_probs=93.3
Q ss_pred CcceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEE-eCCCCcEEEEEEEEeeeccc
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAE-DTKTNKLVGYTLFYYLYDCF 79 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivG~~~~~~~~~~~ 79 (110)
|+.++||.++++|.+.+.++++++..|+....+...++..+....+ ...+...+.++. +.+++.++|++.+.+..++|
T Consensus 1 m~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F-~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW 79 (163)
T KOG3216|consen 1 MDNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGF-IDPPFKHWLVAAIETSGEVVAGFALYFNNYSTW 79 (163)
T ss_pred CCceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhc-cCCCccEEEEEEEecCCCceeEEeeeecccccc
Confidence 7889999999999999999999999999988888889998888656 455555555554 32378999999999999999
Q ss_pred CC-eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 80 EG-KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 80 ~~-~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+ ...|+.++||.|+|||+|+|+.|++.+.
T Consensus 80 ~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va 110 (163)
T KOG3216|consen 80 LGKQGIYLEDLYVREQYRGKGIGSKLLKFVA 110 (163)
T ss_pred cccceEEEEeeEecchhcccChHHHHHHHHH
Confidence 97 6799999999999999999999999764
No 2
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.73 E-value=6.8e-17 Score=89.13 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=70.5
Q ss_pred CcceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
|-++.||+++++|++.+.+++.+.... ........+.+... + ..+...++++.+ ++++||++.+........
T Consensus 1 ~~~~~ir~a~~~D~~~l~~l~~~~~~~---~~~~~~~~~~~~~~-l--~~~~~~~~v~~~--~~~ivG~~~~~~~~~~~~ 72 (144)
T PRK10146 1 MPACELRPATQYDTDAVYALICELKQA---EFDHQAFRVGFNAN-L--RDPNMRYHLALL--DGEVVGMIGLHLQFHLHH 72 (144)
T ss_pred CCccEEeeCcHhhHHHHHHHHHHHhcc---cCCHHHHHHHHHHH-h--cCCCceEEEEEE--CCEEEEEEEEEecccccc
Confidence 346789999999999999998865321 11111122334333 3 233455678888 999999999876432222
Q ss_pred -CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 -GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 -~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+..++|..++|+|++||+|+|+.||++++
T Consensus 73 ~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~ 102 (144)
T PRK10146 73 VNWIGEIQELVVMPQARGLNVGSKLLAWAE 102 (144)
T ss_pred cchhheeheeEECHHHcCCCHHHHHHHHHH
Confidence 22367999999999999999999999876
No 3
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.72 E-value=1.7e-16 Score=89.07 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=70.5
Q ss_pred CcceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
|..+.+|+++++|++.+.++..+...+.........+.+.+... + ...+...++++.. +|++||++.+.....+..
T Consensus 1 ~~~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~--~~~~vG~~~~~~~~~~~~ 76 (162)
T PRK10140 1 MSEIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQER-L-ADRPGIKQLVACI--DGDVVGHLTIDVQQRPRR 76 (162)
T ss_pred CCccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHH-h-hcCCCcEEEEEEE--CCEEEEEEEEeccccccc
Confidence 66789999999999999998875432222222222344555554 3 2223345677777 899999999976432211
Q ss_pred CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...+.+ .++|+|+|||+|+|+.|++.++
T Consensus 77 ~~~~~~-~~~v~p~~rg~Gig~~ll~~l~ 104 (162)
T PRK10140 77 SHVADF-GICVDSRWKNRGVASALMREMI 104 (162)
T ss_pred ceEEEE-EEEECHHHcCCCHHHHHHHHHH
Confidence 222333 5899999999999999998775
No 4
>PTZ00330 acetyltransferase; Provisional
Probab=99.71 E-value=5.8e-16 Score=85.67 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=66.6
Q ss_pred ceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhh--cCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 3 DIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDG--FDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
++.||+++++|.+.+.+++..... . + ..+.+.+.... .........++++.. +|++||++.+......+.
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~~~~~ 77 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSHLTS--A-P---ALSQEELEQIAARRRLAGVVTRVFVHSP--TQRIVGTASLFVEPKFTR 77 (147)
T ss_pred eEEEEEcccccHHHHHHHHHHhcC--C-C---ccchhHHHHHHHHHhcCCCceEEEEEeC--CCEEEEEEEEEecccccc
Confidence 488999999999999999876521 1 1 11222222110 101222234566666 899999999875433222
Q ss_pred -C-eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 -G-KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 -~-~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+ ..+++..++|+|+|||+|+|++|+++++
T Consensus 78 ~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~ 108 (147)
T PTZ00330 78 GGKCVGHIEDVVVDPSYRGQGLGRALISDLC 108 (147)
T ss_pred CCCceEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 2 2478999999999999999999999876
No 5
>PHA00673 acetyltransferase domain containing protein
Probab=99.70 E-value=5.7e-16 Score=85.53 Aligned_cols=98 Identities=18% Similarity=0.046 Sum_probs=69.7
Q ss_pred cCCccCHHHHHHHHHHHHhhccCCCC-Ccc-chhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC--Cee
Q psy631 8 PAQKLDCGQIRALIQELADYQQMPDG-PKI-GADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE--GKY 83 (110)
Q Consensus 8 ~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~--~~~ 83 (110)
-++.+|++.+.+|+.+...-...+.. .+. ....+... ..+++..++++++ +|++||++.+...+.... ...
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai---~~dp~~~llVa~~--~g~vVG~~~l~~~p~l~~~~~~~ 85 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGM---EAAGVAHFLGVFR--GEELVGFACLLVTPVPHFKGQLI 85 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHH---HhCCCcEEEEEEE--CCEEEEEEEEEEecCCccCCccE
Confidence 46789999999998872111111111 111 11223333 3667788899998 999999999988764433 356
Q ss_pred EEEeeEEeccchhccChHHHHHHHHhC
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVVK 110 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~~ 110 (110)
+.|..++|+|++||+|||++||+++++
T Consensus 86 ~~Ie~l~V~~~~RGqGIG~~Ll~~A~~ 112 (154)
T PHA00673 86 GTTESIFVAAAHRPGGAGMALLRATEA 112 (154)
T ss_pred EEEEEEEEChhccCCCHHHHHHHHHHH
Confidence 899999999999999999999998863
No 6
>PRK03624 putative acetyltransferase; Provisional
Probab=99.68 E-value=1.2e-15 Score=83.48 Aligned_cols=92 Identities=22% Similarity=0.181 Sum_probs=65.6
Q ss_pred cceeeecCCccCHHHHHHHHHHHHhhccCCCCCccc--hhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeeccc
Q psy631 2 GDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIG--ADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCF 79 (110)
Q Consensus 2 m~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~ 79 (110)
|++.+|+++++|++.+.+++.... ...++. ...+... . ..+...++++.. ++++||++.+.....
T Consensus 1 ~~~~ir~~~~~d~~~i~~l~~~~~------~~~~~~~~~~~~~~~-~--~~~~~~~~v~~~--~~~~vG~~~~~~~~~-- 67 (140)
T PRK03624 1 DAMEIRVFRQADFEAVIALWERCD------LTRPWNDPEMDIERK-L--NHDPSLFLVAEV--GGEVVGTVMGGYDGH-- 67 (140)
T ss_pred CceEEEEcccccHHHHHHHHHhcC------CCcchhhHHHHHHHH-h--cCCCceEEEEEc--CCcEEEEEEeeccCC--
Confidence 568899999999999999987651 111121 1222222 3 223356778888 899999998764322
Q ss_pred CCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 80 EGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 80 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++..++|+|+|||+|+|+.|++.++
T Consensus 68 ---~~~i~~i~v~p~~rg~Gig~~ll~~~~ 94 (140)
T PRK03624 68 ---RGWAYYLAVHPDFRGRGIGRALVARLE 94 (140)
T ss_pred ---CceEEEEEECHHHhCCCHHHHHHHHHH
Confidence 267788999999999999999999875
No 7
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.66 E-value=1.1e-15 Score=82.67 Aligned_cols=95 Identities=28% Similarity=0.362 Sum_probs=66.2
Q ss_pred eeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCC---
Q psy631 5 VIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG--- 81 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~--- 81 (110)
+||+++++|.+++.++++..+. ...... .....+... + . ...++++.+ +|+|||.+.+.+..-...+
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~--~~~~~~-~~~~~~~~~-~-~---~~~~~~~~~--~~~ivg~~~~~~~~~~~~g~~~ 70 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFG--DSESPP-EIWEYFRNL-Y-G---PGRCVVAED--DGKIVGHVGLIPRRLSVGGKKF 70 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTT--T-CHHH-HHHHHHHHH-H-H---TTEEEEEEE--TTEEEEEEEEEEEEEEETTEEE
T ss_pred CceECCHHHHHHHHHHHHHHCC--CCCCch-hhhhhhhcc-c-C---cCcEEEEEE--CCEEEEEEEEEEEEEEECCEEE
Confidence 4899999999999999998832 211111 111222222 3 1 236788999 9999999999876443333
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.+++..++|+|+|||+|+|++||++++
T Consensus 71 ~~~~i~~v~v~p~~R~~Gl~~~L~~~~~ 98 (127)
T PF13527_consen 71 KAAYIGDVAVDPEYRGRGLGRQLMRALL 98 (127)
T ss_dssp EEEEEEEEEE-GGGTTSSHHHHHHHHHH
T ss_pred EEEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 3489999999999999999999999875
No 8
>PHA01807 hypothetical protein
Probab=99.61 E-value=1.3e-14 Score=80.70 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=62.9
Q ss_pred ecCCccCHHHHHHHHHHHHhhccCCCCCcc--ch---hHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCC
Q psy631 7 RPAQKLDCGQIRALIQELADYQQMPDGPKI--GA---DVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG 81 (110)
Q Consensus 7 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (110)
..++.+|++.+..+..+...-. +...+| .+ ..+... + .+.....+++.+ +|++||++.+.........
T Consensus 7 ~~~~~~d~~~~~~l~l~~l~e~--p~~~~w~s~ee~~~~~~~~-~--~~~~~~~lva~~--dg~lvG~~~l~~~~~~~~~ 79 (153)
T PHA01807 7 VHAKAGTPSELQGLCWLAIQEL--EEFTLFRSKEEALERILDS-T--ESNDRTELLVFR--DGKLAGIAVLVFEDDPHVG 79 (153)
T ss_pred hhhhhCCHHHHHHHHHHHHHhC--ccCCCCCChHHHHHHHHHH-h--hCCCceEEEEEE--CCEEEEEEEEEcCCCccee
Confidence 4677899999999988874422 221111 12 223222 2 223345577888 9999999988765432112
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
....+..+||+|+|||+|+|++||+.++
T Consensus 80 ~i~~l~~lYV~pe~RG~GiG~~Ll~~~~ 107 (153)
T PHA01807 80 PCLGVQWQYVLPEYRNAGVAREFLRELI 107 (153)
T ss_pred eeccceeEEECHHHcCCCHHHHHHHHHH
Confidence 2234556899999999999999999886
No 9
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.61 E-value=2.9e-14 Score=76.02 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhhccCCCCC------ccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEE
Q psy631 13 DCGQIRALIQELADYQQMPDGP------KIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYL 86 (110)
Q Consensus 13 d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i 86 (110)
|++++.+++.+.+......... ....+.+... + ..+...++++++ ++++||++.+. .. ..|
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~v~~~--~~~ivG~~~~~---~~-----~~i 67 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEY-L--EEGSHTIFVAEE--GGEIVGFAWLE---PD-----GEI 67 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHH-H--CTCCCEEEEEEE--TTEEEEEEEEE---TC-----EEE
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHH-H--HhcCCEEEEEEE--CCEEEEEEEEc---CC-----CeE
Confidence 7889999999876543222210 1344555444 4 233367899999 99999999985 22 458
Q ss_pred eeEEeccchhccChHHHHHHHHh
Q psy631 87 EDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 87 ~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++|+|+|||+|+|++|++.++
T Consensus 68 ~~l~v~p~~r~~Gig~~Ll~~~~ 90 (117)
T PF13673_consen 68 SHLYVLPEYRGRGIGRALLDAAE 90 (117)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHH
T ss_pred EEEEEChhhcCCcHHHHHHHHHH
Confidence 89999999999999999999875
No 10
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.59 E-value=4.4e-14 Score=78.49 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=66.0
Q ss_pred cceeeecCCccCHH-HHHHHHHHHHhhccCCCCCccchhHHhhhh--cCCCCCceeEEEEEeCCCCcEEEEEEEEeeecc
Q psy631 2 GDIVIRPAQKLDCG-QIRALIQELADYQQMPDGPKIGADVLERDG--FDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDC 78 (110)
Q Consensus 2 m~~~i~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (110)
+.+.||+++++|.+ .+..++.... ...+++.+.+.+.. +.........+++.+..++++||++.+......
T Consensus 5 ~~~~ir~~~~~D~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (150)
T PLN02706 5 EKFKVRRLEISDKSKGFLELLQQLT------VVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKF 78 (150)
T ss_pred CceEEeEhhhcccchHHHHHHHhcc------CCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeec
Confidence 34789999999988 4777766541 12234444444431 101222344555553224899999988644321
Q ss_pred --cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 79 --FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 79 --~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
......++..++|+|+|||+|+|+.|++.++
T Consensus 79 ~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~ 111 (150)
T PLN02706 79 IRNCGKVGHIEDVVVDSAARGKGLGKKIIEALT 111 (150)
T ss_pred ccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 1234578888999999999999999999876
No 11
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.59 E-value=3.5e-14 Score=85.68 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=68.6
Q ss_pred ceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCe
Q psy631 3 DIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGK 82 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~ 82 (110)
.+.||+++++|++.+.+++.+...... .+ ....+.+... + . +...++++.. +|++||++.+.... ...
T Consensus 115 ~~~IR~a~~~D~~~l~~L~~~v~~~~~--~~-~~~~~~l~~~-~-~--~~~~~~v~~~--~g~iVG~~~~~~~~---~~~ 182 (266)
T TIGR03827 115 GFTLRIATEDDADAMAALYRKVFPTYP--FP-IHDPAYLLET-M-K--SNVVYFGVED--GGKIIALASAEMDP---ENG 182 (266)
T ss_pred ceEEEECCHHHHHHHHHHHHHHhccCC--CC-ccCHHHHHHH-h-c--CCcEEEEEEE--CCEEEEEEEEecCC---CCC
Confidence 378999999999999999988743221 11 1122333333 4 2 3456678888 99999998864321 234
Q ss_pred eEEEeeEEeccchhccChHHHHHHHHh
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.++|..++|+|+|||+|+|+.||+.++
T Consensus 183 ~~eI~~i~V~P~yRG~GiG~~Ll~~l~ 209 (266)
T TIGR03827 183 NAEMTDFATLPEYRGKGLAKILLAAME 209 (266)
T ss_pred cEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 588999999999999999999999875
No 12
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=5.2e-14 Score=78.87 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=72.4
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCC-CCCccchhHHhhhhcCCC-CCceeEEEEEeCCCCcEEEEEEEEeeecccCC
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMP-DGPKIGADVLERDGFDGE-RPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG 81 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (110)
+.||+++.+|++.+.++++......... ...+.+.+.+... +... ...+..+++.. ++|+++|++.+....+...-
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~-~~~~~~~g~p~~V~~~-~~g~v~G~a~~~~fr~r~ay 79 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAW-FSGRTRDGYPVVVAEE-EDGKVLGYASAGPFRERPAY 79 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHH-HHhcccCCceEEEEEc-CCCeEEEEEEeeeccCcccc
Confidence 5899999999999999999875532211 1222333333333 2122 22356777765 14999999999876554334
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHhC
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVVK 110 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~~ 110 (110)
++..-.++||+|++||+|+|++|++.+++
T Consensus 80 ~~tve~SiYv~~~~~g~GiG~~Ll~~Li~ 108 (169)
T COG1247 80 RHTVELSIYLDPAARGKGLGKKLLQALIT 108 (169)
T ss_pred ceEEEEEEEECcccccccHHHHHHHHHHH
Confidence 45666789999999999999999999863
No 13
>PRK07757 acetyltransferase; Provisional
Probab=99.58 E-value=8.3e-14 Score=77.55 Aligned_cols=90 Identities=28% Similarity=0.332 Sum_probs=65.1
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKY 83 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (110)
+.+|+++++|++.+.++....... ......+.+.+... + ..++++.. +|+++|++.+..... ..
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~---~~~~~~~~~~~~~~-~------~~~~i~~~--~~~lvG~~~l~~~~~----~~ 65 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKK---GLMLPRSLDELYEN-I------RDFYVAEE--EGEIVGCCALHILWE----DL 65 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhc---CCccCCCHHHHHhc-c------CcEEEEEE--CCEEEEEEEEEeccC----Cc
Confidence 579999999999999998765321 11112233333222 2 13567777 899999999875432 24
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+++..++|+|+|||+|+|++|++.++
T Consensus 66 ~~i~~v~V~p~~rg~Glg~~Ll~~l~ 91 (152)
T PRK07757 66 AEIRSLAVSEDYRGQGIGRMLVEACL 91 (152)
T ss_pred eEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 78889999999999999999999875
No 14
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.58 E-value=3.8e-14 Score=80.32 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=64.8
Q ss_pred cceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEE-eCCCCcEEEEEEEEeeecccC
Q psy631 2 GDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAE-DTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 2 m~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivG~~~~~~~~~~~~ 80 (110)
+++.+|+++++|.+.+.+++....... ... ....... + ... ..++++. + +++++|++.+.....
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~~~---~~~---~~~~~~~-~-~~~--~~~~va~~~--~~~iiG~~~~~~~~~--- 68 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQGR---ILL---EKNLVTL-Y-EAV--QEFWVAEHL--DGEVVGCGALHVMWE--- 68 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhhcC---ccc---cchHHHH-H-hhc--CcEEEEEec--CCcEEEEEEEeecCC---
Confidence 468999999999999999987753210 111 1111111 2 111 2356777 7 899999998765422
Q ss_pred CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+.+..++|+|+|||+|+|++|+++++
T Consensus 69 -~~~~i~~l~V~p~~rgkGiG~~Ll~~~~ 96 (169)
T PRK07922 69 -DLAEIRTVAVDPAARGRGVGHAIVERLL 96 (169)
T ss_pred -CceEEEEEEECHHHhCCCHHHHHHHHHH
Confidence 2478889999999999999999999875
No 15
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=77.71 Aligned_cols=100 Identities=32% Similarity=0.356 Sum_probs=73.5
Q ss_pred CcceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecc-c
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDC-F 79 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~-~ 79 (110)
||++.||..++.|++.+..+..+.+. +.......+.++.. ........+||.+ +|++||.+.+++..-. +
T Consensus 1 ~~~~~ir~e~~~d~~~i~~~~~~aF~----~~~e~~~v~~lR~~---~~~~~~LslVA~d--~g~vvG~Il~s~v~~~g~ 71 (171)
T COG3153 1 MMMMLIRTETPADIPAIEALTREAFG----PGREAKLVDKLREG---GRPDLTLSLVAED--DGEVVGHILFSPVTVGGE 71 (171)
T ss_pred CCccEEEecChhhHHHHHHHHHHHhh----cchHHHHHHHHHhc---CCcccceeEEEee--CCEEEEEEEEeEEEecCc
Confidence 68899999999999999998887733 11111122222222 1224567899999 8999999999977544 2
Q ss_pred CCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 80 EGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 80 ~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.....-+..+.|+|+|||||||++|++..+
T Consensus 72 ~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~l 101 (171)
T COG3153 72 ELGWLGLAPLAVDPEYQGQGIGSALVREGL 101 (171)
T ss_pred ccceEEEEeEEEchhhcCCcHHHHHHHHHH
Confidence 234478889999999999999999999875
No 16
>PRK09831 putative acyltransferase; Provisional
Probab=99.55 E-value=2.2e-14 Score=79.53 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=62.2
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccC-CCCC----cc---chhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQM-PDGP----KI---GADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYL 75 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~-~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~ 75 (110)
+.||+++++|.+.+.+++.+.+..... ..+. .+ ....+... + ....++++.. +|+++|++.+..
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~v~~~--~~~iiG~~~~~~- 72 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEK-L----AKSQVRVAVI--NAQPVGFITCIE- 72 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHH-H----hcCceEEEEE--CCEEEEEEEehh-
Confidence 368999999999999999876442111 1110 01 11122222 2 1234677888 999999988742
Q ss_pred ecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 76 YDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 76 ~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.++..++|+|+|||+|+|++||++++
T Consensus 73 --------~~i~~~~v~p~~~g~GiG~~Ll~~~~ 98 (147)
T PRK09831 73 --------HYIDMLFVDPEYTRRGVASALLKPLI 98 (147)
T ss_pred --------ceeeeEEECHHHcCCCHHHHHHHHHH
Confidence 46788999999999999999999876
No 17
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=76.04 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=62.3
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKY 83 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (110)
+.||+++.+|++.+..+.... ...++....+... .......+++.. ++++||++.+..... .
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~vG~~~~~~~~~-----~ 63 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRA-------HAFPWSEKTFASN----QGERYLNLKLTV--NGQMAAFAITQVVLD-----E 63 (146)
T ss_pred cchhcCChhhhHHHHHHHHhc-------CCCCCCHHHHHHH----HhcCceEEEEEE--CCeEEEEEEEEeecC-----c
Confidence 478999999999998875433 1223444444322 122234455567 899999998865432 2
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.+..++|+|+|||+|+|+.++++++
T Consensus 64 ~~~~~i~v~~~~rg~G~g~~ll~~~~ 89 (146)
T PRK09491 64 ATLFNIAVDPDYQRQGLGRALLEHLI 89 (146)
T ss_pred eEEEEEEECHHHccCCHHHHHHHHHH
Confidence 66788999999999999999999875
No 18
>PRK01346 hypothetical protein; Provisional
Probab=99.54 E-value=1.1e-13 Score=88.03 Aligned_cols=98 Identities=17% Similarity=0.087 Sum_probs=69.1
Q ss_pred CcceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
||.+.||+++++|++.+.+++... |.... .....+.+... . . + ...+++.+ ++++||++.+.+......
T Consensus 4 ~~~~~iR~~~~~D~~~i~~L~~~~--f~~~~--~~~~~~~~~~~-~-~--~-~~~~va~~--~~~lvg~~~~~~~~~~~~ 72 (411)
T PRK01346 4 DMAITIRTATEEDWPAWFRAAATG--FGDSP--SDEELEAWRAL-V-E--P-DRTLGAFD--GDEVVGTAGAFDLRLTVP 72 (411)
T ss_pred CCCceeecCCHHHHHHHHHHHHHH--cCCCC--ChHHHHHHHHh-c-C--c-CCeEEEEE--CCEEEEEEEEeccccccC
Confidence 367899999999999999998776 32211 11122222222 2 1 1 23577888 899999999875432222
Q ss_pred ----CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 ----GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 ----~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+..+|..++|+|+|||+|+|++||++++
T Consensus 73 ~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l 105 (411)
T PRK01346 73 GGAVLPAAGVTAVTVAPTHRRRGLLTALMREQL 105 (411)
T ss_pred CCCccceeEEEEEEEChhhcCCCHHHHHHHHHH
Confidence 23589999999999999999999999876
No 19
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.53 E-value=3.4e-13 Score=77.82 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=64.1
Q ss_pred ceeeecCCccCHHHHHHHHHHHHhhccCCC--CCccc-hhHHh---hhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 3 DIVIRPAQKLDCGQIRALIQELADYQQMPD--GPKIG-ADVLE---RDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
.+.||+++++|.+.+.+++.+......... ..+.. ...+. ............++++.. +|+++|++.+....
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~g~iiG~i~l~~~~ 120 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDA--SGDPRGYVTLRELN 120 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEcc--CCeEEEEEEEEecC
Confidence 357899999999999999888632111111 11111 11111 111201112222334455 78999999887542
Q ss_pred cccCCeeEEEeeEEeccchhccChHHHHHHHHhC
Q psy631 77 DCFEGKYLYLEDICVTEAYRKKGFGAALFESVVK 110 (110)
Q Consensus 77 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~ 110 (110)
. ..+++..++|+|+|||+|+|++|++.+++
T Consensus 121 ~----~~~~i~~l~V~p~~rGkG~G~~ll~~~~~ 150 (191)
T TIGR02382 121 D----TDARIGLLAVFPGAQSRGIGAELMQTALN 150 (191)
T ss_pred C----CceEEEEEEECHHHcCCCHHHHHHHHHHH
Confidence 1 23688889999999999999999998863
No 20
>PRK10514 putative acetyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=76.27 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=59.1
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEE-EeCCCCcEEEEEEEEeeecccCCe
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVA-EDTKTNKLVGYTLFYYLYDCFEGK 82 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivG~~~~~~~~~~~~~~ 82 (110)
+.||+++++|.+.+.+++.+...... ....+.+.+.+... +....+...++++ .+ ++++||++.+..
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~iG~~~~~~-------- 69 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATH-DFLSAEDRAEIEEL-VRSFLPEAPLWVAVDE--RDQPVGFMLLSG-------- 69 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhC-cccCchhHHHHHHH-HHHHhccCceEEEEec--CCcEEEEEEEec--------
Confidence 56899999999999999887533111 11112222222221 1000111223444 45 789999987642
Q ss_pred eEEEeeEEeccchhccChHHHHHHHHh
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.++..++|+|+|||||+|++|++.+.
T Consensus 70 -~~~~~~~v~p~~rgkGig~~Ll~~~~ 95 (145)
T PRK10514 70 -GHMEALFVDPDVRGCGVGRMLVEHAL 95 (145)
T ss_pred -CcEeEEEECHHhccCCHHHHHHHHHH
Confidence 34567999999999999999999875
No 21
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.51 E-value=2.5e-13 Score=76.18 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=60.2
Q ss_pred eecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEE-eCCCCcEEEEEEEEeeecccCCeeE
Q psy631 6 IRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAE-DTKTNKLVGYTLFYYLYDCFEGKYL 84 (110)
Q Consensus 6 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (110)
||+++.+|++.+.+++.+..... ... ...+... . .. ....++++. + ++++||++.+..... .....
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~---~~~---~~~~~~~-~-~~-~~~~~~v~~~~--~~~ivG~~~~~~~~~--~~~~~ 67 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLD---LNS---SYAYLLL-C-TD-FADTSIVAESE--GGEIVGFVSGYLRPD--RPDVL 67 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCC---ccc---ceehhhh-h-hh-cCCcEEEEEcC--CCeEEEEEEEEecCC--CCCeE
Confidence 68899999999999988752111 010 1111111 1 11 123455666 4 679999987653321 23457
Q ss_pred EEeeEEeccchhccChHHHHHHHHh
Q psy631 85 YLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++..++|+|+|||+|+|++|++.++
T Consensus 68 ~i~~l~V~p~~rg~GiG~~L~~~l~ 92 (157)
T TIGR02406 68 FVWQVAVDPRARGKGLARRLLEALL 92 (157)
T ss_pred EEEEEEEChHhccCcHHHHHHHHHH
Confidence 8889999999999999999999886
No 22
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.51 E-value=1.4e-13 Score=68.75 Aligned_cols=50 Identities=30% Similarity=0.513 Sum_probs=42.7
Q ss_pred eeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 53 FLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++++.+ +++++|++.+....+ ..+|..++|+|+|||+|+|++|++.+.
T Consensus 3 ~~~~~~~~--~~~ivG~~~~~~~~~-----~~~i~~~~v~~~~rg~Gig~~ll~~~~ 52 (79)
T PF13508_consen 3 ERFFVAED--DGEIVGFIRLWPNED-----FAYIGYLAVDPEYRGKGIGSKLLNYLL 52 (79)
T ss_dssp EEEEEEEE--TTEEEEEEEEEETTT-----EEEEEEEEE-GGGTTSSHHHHHHHHHH
T ss_pred cEEEEEEE--CCEEEEEEEEEEcCC-----EEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 46788898 999999999965544 489999999999999999999999874
No 23
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.49 E-value=4.5e-13 Score=88.82 Aligned_cols=92 Identities=22% Similarity=0.324 Sum_probs=66.3
Q ss_pred cceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCC
Q psy631 2 GDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG 81 (110)
Q Consensus 2 m~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (110)
..+.||+++++|++.+.+++....... ...++..+.+... ...++++.+ +|++||++.+.....
T Consensus 462 ~gm~IR~a~~~D~~~I~~L~~~~~~~~---~~~~~~~~~l~~~-------~~~~~Va~~--~g~IVG~~~l~~~~~---- 525 (614)
T PRK12308 462 SGVKVRPARLTDIDAIEGMVAYWAGLG---ENLPRSRNELVRD-------IGSFAVAEH--HGEVTGCASLYIYDS---- 525 (614)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHhhh---cccccCHHHHhcc-------cCcEEEEEE--CCEEEEEEEEEEcCC----
Confidence 457899999999999999987643211 1122233322211 124678888 899999998865422
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++|..++|+|+|||||+|++||+.++
T Consensus 526 ~~~~I~~i~V~P~~rGkGIGk~Ll~~l~ 553 (614)
T PRK12308 526 GLAEIRSLGVEAGWQVQGQGSALVQYLV 553 (614)
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 2478999999999999999999999875
No 24
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.48 E-value=4.4e-13 Score=74.64 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=68.1
Q ss_pred eecCC-ccCHHHHHHHHHHHHh--hccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeeccc--C
Q psy631 6 IRPAQ-KLDCGQIRALIQELAD--YQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCF--E 80 (110)
Q Consensus 6 i~~~~-~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~--~ 80 (110)
||+++ .+|++.+.+|.++... +..... .....+.+... + ...+....+++.. +|+++|++.+....... .
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~-l-~~~~~~~~~v~~~--dg~~~g~~~~~~~~~~~~~~ 75 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDP-SQEWVEEYPEQ-L-EADPGHHPYVAED--DGEPIGYFEIYWPDEDYDAD 75 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCC-THHHHHHHHHH-H-CHTTTEEEEEEEE--TTEEEEEEEEEEGGGSS---
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCC-CHHHHHHHHhh-h-cccCCceEEEEEE--CCEEEEEEEEecccccccCC
Confidence 68999 9999999999886532 322222 22233444444 4 2356677899999 99999999886433222 2
Q ss_pred CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+....++.++++|++||+|+|+.+++.++
T Consensus 76 ~~~~~~~~~~~~~~~rg~G~g~~~~~~~~ 104 (152)
T PF13523_consen 76 DGDRGIHRLIVDPEYRGQGLGKAMLRALI 104 (152)
T ss_dssp TTEEEEEEEESTGGGTTSSHHHHHHHHHH
T ss_pred CCEEEEeeeeechhhcCCCHHHHHHHHHH
Confidence 44577888999999999999999999875
No 25
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.47 E-value=9.3e-13 Score=80.35 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=64.8
Q ss_pred ecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEE
Q psy631 7 RPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYL 86 (110)
Q Consensus 7 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i 86 (110)
.+++++|++++.++.+....+.. ..+++.+.. ....+........+++.+ ++++||++.+...... ..++
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~~~----~~~~ 73 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDG---VAPVSEQVL-RGLREPGAGHTRHLVAVD--SDPIVGYANLVPARGT----DPAM 73 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCC---CCCCCHHHH-hhccccCCCCceEEEEEE--CCEEEEEEEEEcCCCC----cceE
Confidence 35778899999999888755432 224554433 331211222345677777 8999999988764322 2578
Q ss_pred eeEEeccchhccChHHHHHHHHh
Q psy631 87 EDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 87 ~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++|+|+|||+|+|++||++++
T Consensus 74 ~~l~V~p~~rg~GiG~~Ll~~~~ 96 (292)
T TIGR03448 74 AELVVHPAHRRRGIGRALIRALL 96 (292)
T ss_pred EEEEECHhhcCCCHHHHHHHHHH
Confidence 89999999999999999999876
No 26
>KOG3396|consensus
Probab=99.47 E-value=9.7e-13 Score=70.31 Aligned_cols=100 Identities=23% Similarity=0.399 Sum_probs=75.5
Q ss_pred eeeecCCccCHHH-HHHHHHHHHhhccCCCCCccchhHHhhhh--cCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 4 IVIRPAQKLDCGQ-IRALIQELADYQQMPDGPKIGADVLERDG--FDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 4 ~~i~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
+.+|++..+|+.. +.+++.++ +.....+++.|..+. +....+.+...|+++...++++|.+.+........
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qL------T~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh 80 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQL------TSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIH 80 (150)
T ss_pred eEEeecccccccchHHHHHHHH------hhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhh
Confidence 7899999999987 88887776 334455666666651 11233446667777756789999999998755433
Q ss_pred --CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 --GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 --~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+...+|.++.|++++||+++|+.|+..++
T Consensus 81 ~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv 111 (150)
T KOG3396|consen 81 GCGSRGHIEDVVVDSEYRGKQLGKLLVETLV 111 (150)
T ss_pred cccccCceeEEEeChhhhhhHHhHHHHHHHH
Confidence 55689999999999999999999998765
No 27
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.46 E-value=1.6e-12 Score=85.21 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=66.5
Q ss_pred ceeeecC-CccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC-
Q psy631 3 DIVIRPA-QKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE- 80 (110)
Q Consensus 3 ~~~i~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~- 80 (110)
.+.||++ .++|++.+.+++++.. ..+++.+.+... . ..+...++++.+..+|++||++.+......+.
T Consensus 82 g~~IR~~~~~~D~~~I~~L~~~~~-------~~p~~~~~~~~~-~--~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d 151 (547)
T TIGR03103 82 GFTVRRLRGPADVDAINRLYAARG-------MVPVRVDFVLDH-R--HSRAITYLVAEDEASGAIIGTVMGVDHRKAFND 151 (547)
T ss_pred CcEEEeCCChhHHHHHHHHHHhcC-------CCCCCHHHHHHH-h--cCCCceEEEEEECCCCeEEEEEEEEeccccccC
Confidence 3789997 6899999999988741 122334444333 2 23345677777522689999997643322111
Q ss_pred -CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 -GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 -~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
....++..++|+|+|||+|+|++||++++
T Consensus 152 ~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~ 181 (547)
T TIGR03103 152 PEHGSSLWCLAVDPQAAHPGVGEALVRALA 181 (547)
T ss_pred CCCCeEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 22468889999999999999999999886
No 28
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.46 E-value=6.5e-13 Score=66.75 Aligned_cols=50 Identities=26% Similarity=0.543 Sum_probs=43.7
Q ss_pred EEeCCCCcEEEEEEEEeeeccc-CCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 58 AEDTKTNKLVGYTLFYYLYDCF-EGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 58 ~~~~~~~~ivG~~~~~~~~~~~-~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
|++ +|++||++.+....... ....+++..++|+|+|||+|+|+.|+++++
T Consensus 1 ~~~--~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~ 51 (83)
T PF00583_consen 1 AEE--DGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAE 51 (83)
T ss_dssp EEE--TTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHH
T ss_pred CcC--CCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhh
Confidence 456 99999999999887653 256799999999999999999999999875
No 29
>PRK10314 putative acyltransferase; Provisional
Probab=99.45 E-value=2.7e-12 Score=71.72 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=42.7
Q ss_pred eeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 53 FLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...+++.+ ++++||++.+..... ....++|..++|+|+|||+|+|++||+.++
T Consensus 48 ~~h~~~~~--~~~~vg~~r~~~~~~--~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~ 100 (153)
T PRK10314 48 NRHILGWK--NDELVAYARILKSDD--DLEPVVIGRVIVSEALRGEKVGQQLMSKTL 100 (153)
T ss_pred cEEEEEEE--CCEEEEEEEEecCCC--CCCCEEEEEEEECHHHhCCCHHHHHHHHHH
Confidence 45567777 899999999876422 112479999999999999999999999775
No 30
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.45 E-value=2.8e-12 Score=69.41 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEec
Q psy631 13 DCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVT 92 (110)
Q Consensus 13 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~ 92 (110)
|.+.+.++.... + ..+++.+.+... + . .....++++.+ ++++||++.+...... .++..++|+
T Consensus 1 d~~~i~~~~~~~--~-----~~~~~~~~~~~~-~-~-~~~~~~~~~~~--~~~~vg~~~~~~~~~~-----~~i~~~~v~ 63 (131)
T TIGR01575 1 DLKAVLEIEAAA--F-----AFPWTEAQFAEE-L-A-NYHLCYLLARI--GGKVVGYAGVQIVLDE-----AHILNIAVK 63 (131)
T ss_pred CHHHHHHHHHhh--C-----CCCCCHHHHHHH-h-c-CCCceEEEEec--CCeEEEEEEEEecCCC-----eEEEEEEEC
Confidence 456666665544 2 225566666665 4 2 23344566677 8999999997654433 678899999
Q ss_pred cchhccChHHHHHHHHh
Q psy631 93 EAYRKKGFGAALFESVV 109 (110)
Q Consensus 93 p~~rg~Gig~~ll~~~~ 109 (110)
|+|||+|+|++|++.++
T Consensus 64 ~~~rg~G~g~~ll~~~~ 80 (131)
T TIGR01575 64 PEYQGQGIGRALLRELI 80 (131)
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 99999999999999875
No 31
>PRK10562 putative acetyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=72.35 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=58.8
Q ss_pred eecCCccCHHHHHHHHHHHHhhccCCCCC-ccch--hHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCe
Q psy631 6 IRPAQKLDCGQIRALIQELADYQQMPDGP-KIGA--DVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGK 82 (110)
Q Consensus 6 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~ 82 (110)
||+++.+|++.+.+++............. .+.. ...... + .+....+++.. ++++||++.+...
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~v~~~--~~~~iG~~~~~~~------- 68 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDV-Y---LPAAQTWVWEE--DGKLLGFVSVLEG------- 68 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhh-h---cCcccEEEEEE--CCEEEEEEEEeec-------
Confidence 78999999999999987653221100000 0110 111111 1 12234667777 8899999987532
Q ss_pred eEEEeeEEeccchhccChHHHHHHHHh
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+..++|+|+|||+|+|+.|++.++
T Consensus 69 -~~i~~~~v~~~~rg~G~g~~ll~~~~ 94 (145)
T PRK10562 69 -RFVGALFVAPKAVRRGIGKALMQHVQ 94 (145)
T ss_pred -cEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 35778999999999999999999875
No 32
>PLN02825 amino-acid N-acetyltransferase
Probab=99.44 E-value=1.4e-12 Score=84.40 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=67.3
Q ss_pred eeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeE
Q psy631 5 VIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYL 84 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (110)
.||+++++|++.+.++++...... .....+.+.+... + ..+++++. +|+++|++.+.+... ...+
T Consensus 369 ~IR~At~eDi~~I~~Li~~lee~g---~lv~rs~e~le~e-i------~~f~V~e~--Dg~IVG~aal~~~~~---~~~a 433 (515)
T PLN02825 369 GTRMARVEDLAGIRQIIRPLEESG---ILVRRTDEELLRA-L------DSFVVVER--EGSIIACAALFPFFE---EKCG 433 (515)
T ss_pred hheeCCHHHHHHHHHHHHHHHHcC---CCcCCCHHHHHhc-C------CcEEEEEE--CCEEEEEEEEEeecC---CCcE
Confidence 589999999999999998864321 2223344444333 2 23677888 999999998765432 2347
Q ss_pred EEeeEEeccchhccChHHHHHHHHh
Q psy631 85 YLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++..++|+|+|||+|+|++||++++
T Consensus 434 EI~~laV~P~yRGkGiG~~LL~~le 458 (515)
T PLN02825 434 EVAAIAVSPECRGQGQGDKLLDYIE 458 (515)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHH
Confidence 8999999999999999999999876
No 33
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.43 E-value=2.1e-12 Score=70.84 Aligned_cols=90 Identities=26% Similarity=0.253 Sum_probs=66.5
Q ss_pred eeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeE
Q psy631 5 VIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYL 84 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (110)
.+|.++.+|++.+.+++..+..- ..-.+-+.+..... + ..+++++. +|+++|++.+.+.. ..+.+
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~---gil~~rs~~~le~~-i------~dF~i~E~--~g~viGC~aL~~~~---~~~~g 66 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQ---GILLRRSREQLEEE-I------DDFTIIER--DGKVIGCAALHPVL---EEDLG 66 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhc---cccchhhHHHHHHH-H------hhheeeee--CCcEEEEEeecccC---ccCee
Confidence 68999999999999998877321 11122333333333 2 23578888 99999999998521 12358
Q ss_pred EEeeEEeccchhccChHHHHHHHHh
Q psy631 85 YLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+..+.|+|++||+|+|..|++.++
T Consensus 67 E~~~laV~pd~r~~G~G~~Ll~~~~ 91 (153)
T COG1246 67 ELRSLAVHPDYRGSGRGERLLERLL 91 (153)
T ss_pred eEEEEEECHHhcCCCcHHHHHHHHH
Confidence 9999999999999999999999875
No 34
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.43 E-value=6.1e-12 Score=77.81 Aligned_cols=96 Identities=8% Similarity=0.220 Sum_probs=71.2
Q ss_pred cceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEe-C--CCCcEEEEEEEEeeecc
Q psy631 2 GDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAED-T--KTNKLVGYTLFYYLYDC 78 (110)
Q Consensus 2 m~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~ivG~~~~~~~~~~ 78 (110)
|.+.||+++++|++.+.++.+...+|.. ....++++.+... + .. + ..+++.. + .++.+||++.+.....
T Consensus 185 m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~--~~~~~s~~~i~~~-l-~~-~--~~~~~~~~d~~gd~givG~~~~~~~~~- 256 (320)
T TIGR01686 185 LSLNISKNDEQNVQRVEELLGRTNQFNA--TYTRLNQEDVAQH-M-QK-E--EIVTVSMSDRFGDSGIIGIFVFEKKEG- 256 (320)
T ss_pred CEEEEEECChhhhHHHHHHHHhHHhhhc--cCccCCHHHHHHH-h-cC-C--CEEEEEEEecCCCCceEEEEEEEecCC-
Confidence 6689999999999999999987755532 2335677777666 4 22 2 2333321 1 2578999998765433
Q ss_pred cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 79 FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 79 ~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.++|..++|+|.+||+|+|++||++++
T Consensus 257 ----~~~I~~l~vs~r~~grGig~~Ll~~l~ 283 (320)
T TIGR01686 257 ----NLFIDDLCMSCRALGRGVETRMLRWLF 283 (320)
T ss_pred ----cEEEEEEEEcHhHhcCcHHHHHHHHHH
Confidence 389999999999999999999999886
No 35
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.42 E-value=2.3e-12 Score=74.53 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=62.3
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccC--CCCCcc-chhHHhhh---hcCCCCCceeEEEEEeCCCCcEEEEEEEEeeec
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQM--PDGPKI-GADVLERD---GFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYD 77 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~ 77 (110)
..||+++++|++.+.+++++....... +...+. ....+... .. .......++++.+ .+|++||++.+.....
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~-~~g~~vG~~~l~~~~~ 124 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAV-RGTFDHQCLLLRD-ASGQIQGFVTLRELND 124 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhh-ccccCCcEEEEEc-CCCCEEEEEEEEecCC
Confidence 468899999999999998876332111 111111 11111111 11 1111223445543 1689999998864322
Q ss_pred ccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 78 CFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 78 ~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...++..++|+|+|||+|+|++|++.++
T Consensus 125 ----~~~~i~~~~V~p~~rg~Gig~~Ll~~~~ 152 (194)
T PRK10975 125 ----TDARIGLLAVFPGAQGRGIGARLMQAAL 152 (194)
T ss_pred ----CceEEEEEEEChhhcCCCHHHHHHHHHH
Confidence 2377888999999999999999999876
No 36
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.42 E-value=1.1e-12 Score=83.96 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=65.8
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKY 83 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (110)
+.||+++.+|++.+.++++..... .....+..+.+... . ..++++++ +++++|++.+.+... ...
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~---~~~~~~~~~~l~~~-~------~~~~V~~~--dg~iVG~~~~~~~~~---~~~ 347 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQ---GILVRRSREYLERE-I------SEFSIIEH--DGNIIGCAALYPYAE---EDC 347 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHc---CCchhhhHHHHHhh-c------CcEEEEEE--CCEEEEEEEEEecCC---CCe
Confidence 468999999999999998765321 11222333333222 2 23567777 899999998876422 235
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+++..++|+|+|||+|+|++||++++
T Consensus 348 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~ 373 (429)
T TIGR01890 348 GEMACLAVSPEYQDGGRGERLLAHIE 373 (429)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999886
No 37
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.42 E-value=1.9e-12 Score=83.08 Aligned_cols=91 Identities=25% Similarity=0.285 Sum_probs=65.3
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKY 83 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (110)
+.||+++++|++.+.+++....... ....++.+.+... + ..++++.+ +++++|++.+..... ...
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~---~~~~~~~~~l~~~-~------~~~~va~~--dg~iVG~~~~~~~~~---~~~ 359 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQG---ILVRRSREQLERE-I------DKFTVIER--DGLIIGCAALYPFPE---EKM 359 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcC---CccccCHHHHhcc-c------CcEEEEEE--CCEEEEEEEEEEcCC---CCe
Confidence 5789999999999999987653211 1222333333222 2 23677888 999999987765422 235
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++|..++|+|+|||+|+|++||++++
T Consensus 360 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~ 385 (441)
T PRK05279 360 GEMACLAVHPDYRGSGRGERLLKRIE 385 (441)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999875
No 38
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.38 E-value=1e-11 Score=69.25 Aligned_cols=98 Identities=28% Similarity=0.356 Sum_probs=60.9
Q ss_pred eecCCccCHHHHHHHHHHHHhhccCCCC-CccchhHHhhhhcC---CCCCceeEEEEEeCCCCcEEEEEEEEeeecccCC
Q psy631 6 IRPAQKLDCGQIRALIQELADYQQMPDG-PKIGADVLERDGFD---GERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG 81 (110)
Q Consensus 6 i~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (110)
||+++.+|++.+..++++.......... ...+.+..... ++ .......+.+... +|++||++.+....+ ..
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~--~g~iiG~~~~~~~~~--~~ 75 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERW-IESIIDSSKQRLFLVAEE--DGKIIGYVSLRDIDP--YN 75 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHH-HHHHHHHHTTEEEEEEEC--TTEEEEEEEEEESSS--GT
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHH-HHHhcccCCCcEEEEEEc--CCcEEEEEEEEeeec--cC
Confidence 7899999999999999874322211111 11222222222 21 1122344455555 899999999985533 23
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+.+ .++|.|++|++|+|+.|++.++
T Consensus 76 ~~~~~-~~~v~~~~~~~gig~~l~~~l~ 102 (155)
T PF13420_consen 76 HTAEL-SIYVSPDYRGKGIGRKLLDELI 102 (155)
T ss_dssp TEEEE-EEEEEGGGTTSSHHHHHHHHHH
T ss_pred CEEEE-eeEEChhHCCCcHHHHHHHHHH
Confidence 34555 4889999999999999999875
No 39
>PRK13688 hypothetical protein; Provisional
Probab=99.37 E-value=3.3e-12 Score=71.44 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=43.8
Q ss_pred CCceeEEEEEeCCCCcEEEEEEEEeeecc------cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 50 RPLFLSTVAEDTKTNKLVGYTLFYYLYDC------FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 50 ~~~~~~~~~~~~~~~~ivG~~~~~~~~~~------~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+...++++.+ +++++|++.+...... .....++|..++|+|+|||||+|++|++.+.
T Consensus 42 ~~~~~~~~~~~--~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~ 105 (156)
T PRK13688 42 DSESPFYGIYY--GDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK 105 (156)
T ss_pred CCCCCEEEEEE--CCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 34456677888 8999998877543211 1134589999999999999999999998764
No 40
>KOG3235|consensus
Probab=99.33 E-value=4.7e-12 Score=69.50 Aligned_cols=95 Identities=23% Similarity=0.221 Sum_probs=67.1
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC-Ce
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE-GK 82 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~-~~ 82 (110)
+.||.++++|+-.+..+ .-...+..+....+....+ ......|||++ .+|+|||++.......+.. .+
T Consensus 2 m~iR~ar~~DL~~mQ~~-------Nl~~lpENyqmkyylyh~l---swp~lSyVA~D-~~gkiVGYvlAkmee~p~~~~~ 70 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHC-------NLLNLPENYQMKYYLYHGL---SWPQLSYVAED-ENGKIVGYVLAKMEEDPDDEPP 70 (193)
T ss_pred cccccCCHHHHHHhhhc-------ccccCcHHHhHHHHHHhhc---ccccceEEEEc-CCCcEEEEeeeehhhcccCCCC
Confidence 46888888776655432 1112344444555555533 33356788884 4899999999987765544 44
Q ss_pred eEEEeeEEeccchhccChHHHHHHHHh
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.+|.++.|...||+.|+|++||....
T Consensus 71 hGhItSlaV~rs~RrlGla~kLm~qa~ 97 (193)
T KOG3235|consen 71 HGHITSLAVKRSYRRLGLAQKLMNQAS 97 (193)
T ss_pred CCeeEEeeehhhHHHhhHHHHHHHHHH
Confidence 799999999999999999999998754
No 41
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.31 E-value=2.3e-11 Score=69.11 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=64.3
Q ss_pred ceeeecCCccCHH--HHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCC-CC----cEEEEEEEEee
Q psy631 3 DIVIRPAQKLDCG--QIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTK-TN----KLVGYTLFYYL 75 (110)
Q Consensus 3 ~~~i~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~ivG~~~~~~~ 75 (110)
.+.++.+...|.. .+..+.... +... .+|+...+... + ......++++.... ++ +++|++.....
T Consensus 11 ~~~ir~~~~~d~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~-l--~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~ 82 (177)
T COG0456 11 KVTIREAINKDLLDVALAALEART--FDIR---LPWSREYFEKD-L--TQAPELLLVAETGGLDGLLDGKVVGFLLVRVV 82 (177)
T ss_pred ceehhhhhhcccchHHHHHHhhhc--CCCC---CcchHHHHHHH-H--hhCcceeEEEEecccCCCcccceeEEEEEEEe
Confidence 3577888888888 554443333 2111 56777777777 4 23334455555400 12 59999998633
Q ss_pred ecc-cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 76 YDC-FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 76 ~~~-~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
... .....++|..++|+|+|||+|+|++|+++++
T Consensus 83 ~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~ 117 (177)
T COG0456 83 DGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEAL 117 (177)
T ss_pred cCCccccCccEEEEEEEChHhhcCCHHHHHHHHHH
Confidence 221 1122589999999999999999999999865
No 42
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.30 E-value=4.9e-11 Score=68.48 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=62.8
Q ss_pred ceeeecCCccCHHHHHHHHHHHH--hhccCCCCCcc--chhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecc
Q psy631 3 DIVIRPAQKLDCGQIRALIQELA--DYQQMPDGPKI--GADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDC 78 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (110)
.+.+|+++++|++.+.++..... .+.. ...... ....+....+ ..+....|++.. +|++||++.+.....
T Consensus 6 ~l~lR~~~~~D~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~--~g~~iG~~~~~~~~~- 79 (186)
T PRK15130 6 SVKLRPLEREDLRFVHQLDNNASVMRYWF-EEPYEAFVELSDLYDKHI--HDQSERRFVVEC--DGEKAGLVELVEINH- 79 (186)
T ss_pred eeEEecCCHHHHHHHHHHhcChHHHhhcC-CcccccHHHHHHHHHHhh--hcccCcEEEEEE--CCEEEEEEEEEeecC-
Confidence 47899999999999999866432 1111 111111 1111112212 223345677778 899999998865432
Q ss_pred cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 79 FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 79 ~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+.+.+ .++|+|+|||+|+|+++++.++
T Consensus 80 -~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~ 108 (186)
T PRK15130 80 -VHRRAEF-QIIISPEYQGKGLATRAAKLAM 108 (186)
T ss_pred -CCCeEEE-EEEECHHHcCCCHHHHHHHHHH
Confidence 2233444 5899999999999999998775
No 43
>KOG3139|consensus
Probab=99.29 E-value=1.5e-10 Score=63.83 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=46.1
Q ss_pred CCCCceeEEEEEeCCCCc-EEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHhC
Q psy631 48 GERPLFLSTVAEDTKTNK-LVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVVK 110 (110)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~-ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~~ 110 (110)
.......++++.+ ++. -||.+.+....... ...++|..++|+++|||+|||++|++.+++
T Consensus 51 ~~~wp~~~~~a~d--~~~~~VGai~ck~~~~r~-~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId 111 (165)
T KOG3139|consen 51 VPNWPCFCFLALD--EKGDTVGAIVCKLDTHRN-TLRGYIAMLAVDSEYRGQGIGKALVRKAID 111 (165)
T ss_pred ccCCceEEEEEEc--CCCceEEEEEEeccccCC-cceEEEEEEEechhhccccHHHHHHHHHHH
Confidence 3455567888886 444 58888877554332 456999999999999999999999998874
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.28 E-value=2.3e-10 Score=69.92 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=61.0
Q ss_pred eeeecCCc-cCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCC-CCCceeEEEEEeCCCCcEEEEEEEEeeecccCC
Q psy631 4 IVIRPAQK-LDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDG-ERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG 81 (110)
Q Consensus 4 ~~i~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (110)
+.+++++. .|.+.+.++.+.. +...+....|+.+.+....... ..+ ..++++.+..++++||++.+..... ..
T Consensus 150 ~~~r~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~vG~~~~~~~~~--~~ 224 (292)
T TIGR03448 150 VTVRAYVGAPDDAEWLRVNNAA--FAWHPEQGGWTRADLAERRAEPWFDP-AGLFLAFDDAPGELLGFHWTKVHPD--EP 224 (292)
T ss_pred eEeeccCCCcchHHHHHHHHHH--hhCCCccCCcCHHHHHHHhhCcCCCc-CceEEEEECCCCcEEEEEEEEecCC--CC
Confidence 67788754 4777777776555 3222333456555554431101 112 2345565512489999976554321 12
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...++..++|+|+|||||+|+.|++.++
T Consensus 225 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~ 252 (292)
T TIGR03448 225 ALGEVYVVGVDPAAQGRGLGDALTLIGL 252 (292)
T ss_pred ceeEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 2356667899999999999999998765
No 45
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.22 E-value=2.7e-10 Score=65.03 Aligned_cols=101 Identities=10% Similarity=0.143 Sum_probs=61.8
Q ss_pred eeeecCCccCHHHHHHHHHHHHhh--ccCC-CCCccchhHHhhh---hcC-CCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADY--QQMP-DGPKIGADVLERD---GFD-GERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
+.+|+++++|++.+..++.+...+ .... .....+.+...+. ... ........+++.. +|++||++.+....
T Consensus 11 l~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~--~~~~iG~~~l~~~~ 88 (179)
T PRK10151 11 LELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFK--EDELIGVLSFNRIE 88 (179)
T ss_pred EEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEE--CCEEEEEEEEEeec
Confidence 789999999999999998532211 1111 1111222222222 110 1122223566667 89999999886542
Q ss_pred cccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 77 DCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 77 ~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
. ..+.+.+ .++++|+|||+|+|+++++.++
T Consensus 89 ~--~~~~~~i-g~~i~~~~~g~G~~tea~~~l~ 118 (179)
T PRK10151 89 P--LNKTAYI-GYWLDESHQGQGIISQALQALI 118 (179)
T ss_pred c--CCCceEE-EEEEChhhcCCcHHHHHHHHHH
Confidence 2 1234666 4689999999999999998765
No 46
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.21 E-value=1.8e-10 Score=63.17 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=61.6
Q ss_pred eeeecCCccCHHHHHHHHHH--HHhhccCCCCCccchhHHhhh----hcCCCCCceeEEEEEeCCCCcEEEEEEEEeeec
Q psy631 4 IVIRPAQKLDCGQIRALIQE--LADYQQMPDGPKIGADVLERD----GFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYD 77 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~ 77 (110)
+.||+++++|++.+.++.+. ...+....... .+.+...+. ..........+|++.+.+++++||++.+.....
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~ 80 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPW-PTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK 80 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSS-SSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCC-CCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc
Confidence 57999999999999998852 22232111111 132222221 010111125566666533457999999954422
Q ss_pred ccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 78 CFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 78 ~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
....+.+. ++|.|+|||+|+|+.++..++
T Consensus 81 --~~~~~eig-~~i~~~~~g~G~~~~~~~~~~ 109 (142)
T PF13302_consen 81 --NNNWAEIG-YWIGPDYRGKGYGTEALKLLL 109 (142)
T ss_dssp --TTTEEEEE-EEEEGGGTTSSHHHHHHHHHH
T ss_pred --CCCccccc-cchhHHHHhhhHHHHHHHHHH
Confidence 23456764 889999999999999998875
No 47
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.18 E-value=7.4e-10 Score=64.03 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=60.7
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccC--CCC--CccchhHH---hh---hhcCCCCCceeEEEEEeCCCCcEEEEEEEE
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQM--PDG--PKIGADVL---ER---DGFDGERPLFLSTVAEDTKTNKLVGYTLFY 73 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~ 73 (110)
+.||+++++|.+.+.+++.+...+... +.. .....+.+ .. ... ..+....|++.+..++++||.+.+.
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~iG~i~l~ 95 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFH--KQGSAFYFALLDPDEKEIIGVANFS 95 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHH--hcCcEEEEEEEECCCCeEEEEEEEE
Confidence 789999999999999998863322111 111 01111111 11 112 2232334444331267999999987
Q ss_pred eeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 74 YLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 74 ~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..... ....+++ .++|.|+|||+|+|+.+++.++
T Consensus 96 ~~~~~-~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll 129 (194)
T PRK10809 96 NVVRG-SFHACYL-GYSLGQKWQGQGLMFEALQAAI 129 (194)
T ss_pred eecCC-CeeeEEE-EEEECHHHcCCCHHHHHHHHHH
Confidence 54321 1123444 5789999999999999999876
No 48
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.14 E-value=3e-10 Score=53.61 Aligned_cols=50 Identities=36% Similarity=0.561 Sum_probs=41.4
Q ss_pred EEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 56 TVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 56 ~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+++.. +++++|++.+..... ..+.+++..++|+|+|||+|+|+.++..++
T Consensus 2 ~~~~~--~~~~ig~~~~~~~~~--~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~ 51 (65)
T cd04301 2 LVAED--DGEIVGFASLSPDGS--GGDTAYIGDLAVLPEYRGKGIGSALLEAAE 51 (65)
T ss_pred EEEec--CCEEEEEEEEEecCC--CCccEEEEEEEECHHHcCcCHHHHHHHHHH
Confidence 45566 899999999987643 234589999999999999999999999875
No 49
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.11 E-value=1e-09 Score=61.22 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=61.6
Q ss_pred eeecCCccCHHHHHHHHHHH--HhhccC-CCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCC
Q psy631 5 VIRPAQKLDCGQIRALIQEL--ADYQQM-PDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEG 81 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 81 (110)
.+|+++++|++.+.++.++. ..+... +.......+.+..... ..+....+++.. +|++||++.+...... .
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~g~~vG~~~~~~~~~~--~ 75 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALK--QDPNRRYWIVCQ--ESRPIGVISFTDINLV--H 75 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhh--cCCCceEEEEEE--CCEEEEEEEEEecChh--h
Confidence 47899999999999987642 222111 1111112233333322 233345677777 8999999998754321 2
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+.+ .+++.|.+| +|+|++++..++
T Consensus 76 ~~~~~-g~~~~~~~~-~G~g~~~~~~~~ 101 (156)
T TIGR03585 76 KSAFW-GIYANPFCK-PGVGSVLEEAAL 101 (156)
T ss_pred CeEEE-EEEeChhhh-cCchHHHHHHHH
Confidence 23455 456999999 999999998875
No 50
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=99.10 E-value=1.8e-09 Score=66.77 Aligned_cols=104 Identities=23% Similarity=0.198 Sum_probs=60.2
Q ss_pred ceeeecCCccCHHHHHHHHHHHHh-hccCCCCCc-------cchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEe
Q psy631 3 DIVIRPAQKLDCGQIRALIQELAD-YQQMPDGPK-------IGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYY 74 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~ 74 (110)
++.||+++.+|++.+.++....-. +...+.... .+.+.|.......+.+..++||.++++.|+|+|++.+..
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a 80 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEA 80 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEES
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEe
Confidence 358999999999999999887522 333232211 222233222111233456789999866899999999982
Q ss_pred ee-----------------cc---------------cCCeeEEEeeEEeccchhccChHHHHHH
Q psy631 75 LY-----------------DC---------------FEGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 75 ~~-----------------~~---------------~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
.. +. .......|+.++++|+||+.|.|+.|-+
T Consensus 81 ~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr 144 (342)
T PF04958_consen 81 AVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSR 144 (342)
T ss_dssp STTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHH
T ss_pred ccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHH
Confidence 10 00 0134578999999999999999998754
No 51
>PRK10456 arginine succinyltransferase; Provisional
Probab=99.03 E-value=5.4e-09 Score=64.56 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=67.2
Q ss_pred eeeecCCccCHHHHHHHHHHHHh-hccCCCCCc-------cchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEee
Q psy631 4 IVIRPAQKLDCGQIRALIQELAD-YQQMPDGPK-------IGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYL 75 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~ 75 (110)
+.||+++.+|++.+.++..+.-. +...+.... .+.+.|... . ...+..++||.++++.|+|+|++.+...
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~-~-~~~~~~YlFVLED~~tg~vvGts~I~a~ 79 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGE-L-PKSEQGYVFVLEDSETGTVAGICAIEVA 79 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCc-C-CCCCccEEEEEEeCCCCcEEEEEeEEec
Confidence 78999999999999999877522 222222211 222223111 1 2245567888887668999999998832
Q ss_pred ec---c-----------------------------cCCeeEEEeeEEeccchhccChHHHHHH
Q psy631 76 YD---C-----------------------------FEGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 76 ~~---~-----------------------------~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
.- + .......|+.++++|+||+.|.|+.|-+
T Consensus 80 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr 142 (344)
T PRK10456 80 VGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSK 142 (344)
T ss_pred ccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHH
Confidence 10 0 0124578999999999999999988754
No 52
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.00 E-value=1.7e-09 Score=66.21 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=38.6
Q ss_pred eeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 53 FLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+++..+ ++++||++.+.. ..|..++|+|+|||+|+|++||++++
T Consensus 6 ~~~~v~~~--~~~iVG~~~l~~---------~~I~~vaV~p~~Rg~GiG~~Ll~~l~ 51 (297)
T cd02169 6 YTVGIFDD--AGELIATGSIAG---------NVLKCVAVCPKYQGEGLALKIVSELI 51 (297)
T ss_pred EEEEEEEE--CCEEEEEEEecc---------CEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 45666677 899999987742 35889999999999999999999886
No 53
>KOG2488|consensus
Probab=99.00 E-value=1.3e-08 Score=57.69 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=50.2
Q ss_pred cchhHHhhhhcCCCCCceeEEEEEeCCCC-cEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 36 IGADVLERDGFDGERPLFLSTVAEDTKTN-KLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
|.+..-... + ......++++.+ ++ ++|||..+...... .....|+..+-|.+.|||+|||+.||+.+.
T Consensus 78 w~~~~K~~E-l--~~~~~~Yi~a~~--~~~~~vgf~~Frf~vd~-g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~ 146 (202)
T KOG2488|consen 78 WDDNSKAKE-L--RNRKLRYICAWN--NKSKLVGFTMFRFTVDT-GDPVLYCYEVQVASAYRGKGIGKFLLDTLE 146 (202)
T ss_pred cCchhHHHH-H--hhccceEEEEEc--CCCceeeEEEEEEEccc-CCeEEEEEEEeehhhhhccChHHHHHHHHH
Confidence 555544444 3 333456677776 55 89999999877432 245689999999999999999999999874
No 54
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.98 E-value=3.5e-09 Score=52.66 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=37.5
Q ss_pred EEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 57 VAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 57 ~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+.. +|+.+|++.+... ++...+...+|.|++||||+|+.|++.++
T Consensus 3 ~~~~--~g~~~a~l~Y~~~-----~~~~~i~hT~V~~~~rGqGia~~L~~~~l 48 (78)
T PF14542_consen 3 ELKD--DGEEIAELTYRED-----GGVIVITHTEVPPELRGQGIAKKLVEAAL 48 (78)
T ss_dssp EEES--STTEEEEEEEEES-----SSEEEEEEEEE-CSSSTTTHHHHHHHHHH
T ss_pred EEEE--CCEEEEEEEEEeC-----CCEEEEEEEEECccccCCcHHHHHHHHHH
Confidence 3455 7889999988653 34589999999999999999999999876
No 55
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=98.92 E-value=2.7e-08 Score=61.39 Aligned_cols=101 Identities=21% Similarity=0.094 Sum_probs=67.2
Q ss_pred eeecCCccCHHHHHHHHHHHHh-hccCCCCC-------ccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 5 VIRPAQKLDCGQIRALIQELAD-YQQMPDGP-------KIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
.||+++.+|++.+.++..+.-. +...+... ..+.+.|....- ...+..++||.++++.|+|+|++.+....
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~-~~~~~~YlFVLEDt~tg~vvGts~I~a~v 79 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVS-FVGEERYLFVLEDTETGKLLGTSSIVASA 79 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcC-CCCCccEEEEEEeCCCCcEEEEEeEEecc
Confidence 3799999999999999877522 33333221 123334432211 23456778898876689999999988321
Q ss_pred c---c-----------------------------cCCeeEEEeeEEeccchhccChHHHHHH
Q psy631 77 D---C-----------------------------FEGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 77 ~---~-----------------------------~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
- + .......|+.++++|+||+.|.|+.|-+
T Consensus 80 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr 141 (336)
T TIGR03245 80 GYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSR 141 (336)
T ss_pred cCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHH
Confidence 0 0 0124578999999999999999988754
No 56
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=98.91 E-value=2.5e-08 Score=61.49 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=67.1
Q ss_pred eeecCCccCHHHHHHHHHHHHh-hccCCCCC-------ccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 5 VIRPAQKLDCGQIRALIQELAD-YQQMPDGP-------KIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
.||+++.+|++.+.++..+.-. +...+... ..+...|... . .+.+..++||.++++.|+|+|++.+....
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~-~-~~~~~~YlFVLED~~tg~vvGts~I~a~v 78 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGE-S-TRGEEGYLFVLEDTETGTVAGVSAIEAAV 78 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcc-c-CCCCccEEEEEEeCCCCeEEEEEeEEecc
Confidence 3799999999999999877522 33323221 1233333222 1 23456778899976689999999988321
Q ss_pred c---c-----------------------------cCCeeEEEeeEEeccchhccChHHHHHH
Q psy631 77 D---C-----------------------------FEGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 77 ~---~-----------------------------~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
- + .......|+.++++|+||+.|.|+.|-+
T Consensus 79 G~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr 140 (335)
T TIGR03243 79 GLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSR 140 (335)
T ss_pred cCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHH
Confidence 0 0 0124578999999999999999988754
No 57
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=98.88 E-value=3.5e-08 Score=60.98 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=65.6
Q ss_pred eeecCCccCHHHHHHHHHHHHh-hccCCCCCc-------cchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 5 VIRPAQKLDCGQIRALIQELAD-YQQMPDGPK-------IGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
.||+++.+|++.+.++..+.-. +...+.... .+.+.|... . ...+..++||.++++.|+|+|++.+....
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~-~-~~~~~~YlFVLEDt~tg~vvGts~I~a~v 78 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGE-L-TRAEQGYLFVLEDTETGTVAGVSAIEAAV 78 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCc-C-CCCCccEEEEEEeCCCCeEEEEEeEEecc
Confidence 3799999999999999877522 222222211 222222111 1 22445678888876689999999988321
Q ss_pred c---c-----------------------------cCCeeEEEeeEEeccchhccChHHHHHH
Q psy631 77 D---C-----------------------------FEGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 77 ~---~-----------------------------~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
- + .......|+.++++|+||+.|.|+.|-+
T Consensus 79 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr 140 (336)
T TIGR03244 79 GLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSK 140 (336)
T ss_pred cCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHH
Confidence 0 0 0124578999999999999999988754
No 58
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.87 E-value=9.9e-09 Score=55.85 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=43.1
Q ss_pred ceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 52 LFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 52 ~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
....+.... +|++++++.+.+.... ...+.|+.+.|.|++||+|+|++||..++
T Consensus 49 ~~Hl~~~~~--~g~LvAyaRLl~~~~~--~~~~~iGRV~v~~~~RG~glG~~Lm~~AL 102 (155)
T COG2153 49 TRHLLGWTP--DGELVAYARLLPPGAE--YEEVSIGRVIVSPAARGQGLGQQLMEKAL 102 (155)
T ss_pred cceEEEEcC--CCeEEEEEecCCCCCC--cCceeeeeEEECHhhhccchhHHHHHHHH
Confidence 345566666 8999999999876432 12277999999999999999999999876
No 59
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.84 E-value=2.1e-07 Score=49.86 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=44.3
Q ss_pred CCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 50 RPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 50 ~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.....+|+|.- |++++|.+.+...... +.+..+.|++.=|++|+|+-|++.+.
T Consensus 35 ~~~~~l~aArF--NdRlLgAv~v~~~~~~-----~~L~~l~VRevTRrRGVG~yLlee~~ 87 (128)
T PF12568_consen 35 DEGHRLFAARF--NDRLLGAVKVTISGQQ-----AELSDLCVREVTRRRGVGLYLLEEVL 87 (128)
T ss_dssp -SSEEEEEEEE--TTEEEEEEEEEEETTE-----EEEEEEEE-TT-SSSSHHHHHHHHHH
T ss_pred ccCCeEEEEEe--chheeeeEEEEEcCcc-----eEEeeEEEeeccccccHHHHHHHHHH
Confidence 34467899999 9999999999987654 99999999999999999999998764
No 60
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.83 E-value=2.7e-08 Score=55.68 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=66.6
Q ss_pred CcceeeecCCccCHHHHHHHHHHHHhhccCCCCC-------ccchhHHhhhhcC-----CCC----CceeEEEEEeCCCC
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQELADYQQMPDGP-------KIGADVLERDGFD-----GER----PLFLSTVAEDTKTN 64 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~ 64 (110)
|-.+.++..+..+.+++.++.++........... ...-+.+.+...+ +.. +...+|.... ++
T Consensus 1 me~~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~--d~ 78 (174)
T COG3981 1 MEEMKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDE--DG 78 (174)
T ss_pred CCcccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEec--CC
Confidence 5567888889999999999888765432222111 1122223222110 111 2234455555 89
Q ss_pred cEEEEEEEEeeecccC-CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 65 KLVGYTLFYYLYDCFE-GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 65 ~ivG~~~~~~~~~~~~-~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++||++.+...-+.+. ....+| +-.|.|+.||||+|+++++.++
T Consensus 79 ~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L 123 (174)
T COG3981 79 QIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLAL 123 (174)
T ss_pred cEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHH
Confidence 9999999997766543 223444 3469999999999999998765
No 61
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.82 E-value=3.1e-08 Score=61.68 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=39.0
Q ss_pred eeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 53 FLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++++.+ +|++||++.+.. ..+..++|+|+|||+|+|++||++++
T Consensus 31 d~~vv~~~--~~~lVg~g~l~g---------~~ik~vaV~~~~rG~Glg~~L~~~L~ 76 (332)
T TIGR00124 31 EIFIAVYE--DEEIIGCGGIAG---------NVIKCVAIDESLRGEGLALQLMTELE 76 (332)
T ss_pred CEEEEEEE--CCEEEEEEEEec---------CEEEEEEEcHHHcCCCHHHHHHHHHH
Confidence 45677788 899999998742 25889999999999999999999886
No 62
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.75 E-value=3.6e-08 Score=50.86 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=43.2
Q ss_pred CceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 51 PLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 51 ~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.....+++.+ +|+.+|.+......+. ...|...+|.+++||||+|++|+++++
T Consensus 13 ~~~~~y~~~~--~G~~~~e~~y~~~~~~----~i~i~HT~V~d~lrGqGia~~L~~~al 65 (99)
T COG2388 13 GENGRYVLTD--EGEVIGEATYYDRGEN----LIIIDHTYVPDELRGQGIAQKLVEKAL 65 (99)
T ss_pred cCceEEEEec--CCcEEEEEEEecCCCC----EEEEecCcCCHHHcCCcHHHHHHHHHH
Confidence 3455677777 8989998887766532 489999999999999999999999876
No 63
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.66 E-value=8e-08 Score=48.72 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.9
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.|..++|+|+|||+|+|+.++..+.
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~ 47 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALA 47 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHH
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999998764
No 64
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.62 E-value=5.4e-07 Score=52.10 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=47.0
Q ss_pred hhHHhhhhcCCCCCceeEEEEEeCCCC--cEEEEEEEEeeeccc---------------------------------CCe
Q psy631 38 ADVLERDGFDGERPLFLSTVAEDTKTN--KLVGYTLFYYLYDCF---------------------------------EGK 82 (110)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ivG~~~~~~~~~~~---------------------------------~~~ 82 (110)
+.++... . +.|....|++.. ++ +++|.+.+....... .-.
T Consensus 15 PnDL~~L-l--DaP~h~l~~l~~--~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~ 89 (196)
T PF13718_consen 15 PNDLQLL-L--DAPNHRLFVLLQ--PGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLS 89 (196)
T ss_dssp HHHHHHH-H--H-TTEEEEEEE---SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSE
T ss_pred HHHHHHH-h--cCCcceeehhcc--CCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhc
Confidence 4444443 3 567788889888 77 999999998654320 014
Q ss_pred eEEEeeEEeccchhccChHHHHHHHHh
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+.|..++|+|++|++|+|+++++.++
T Consensus 90 g~RIvRIAvhP~~q~~G~Gs~lL~~l~ 116 (196)
T PF13718_consen 90 GARIVRIAVHPDLQRMGYGSRLLQQLE 116 (196)
T ss_dssp EEEEEEEEE-CCC-SSSHHHHHHHHHH
T ss_pred ceeEEEEEEChhhhcCCHHHHHHHHHH
Confidence 589999999999999999999999875
No 65
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.56 E-value=2.3e-07 Score=55.39 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=35.4
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+|+||..+...... ...+.|..+|++|+|||||+|+.|+..+.
T Consensus 185 d~~iVa~A~t~a~~----~~~~~I~gV~T~peyR~kGyAt~lva~L~ 227 (268)
T COG3393 185 DGKIVAKAETAAEN----PAYAQINGVYTHPEYRGKGYATALVATLA 227 (268)
T ss_pred CCcEEEeeeccccC----CcceEEEEEEcCHHHccccHHHHHHHHHH
Confidence 56999888665442 34699999999999999999999998763
No 66
>KOG3234|consensus
Probab=98.52 E-value=3.5e-07 Score=50.59 Aligned_cols=93 Identities=19% Similarity=0.092 Sum_probs=57.4
Q ss_pred eeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeE
Q psy631 5 VIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYL 84 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (110)
.+|+.+.+|+...-. ..-.+.........+..... .-+ ..+.+++. +++++.|++...... ....-++
T Consensus 3 t~r~f~~~Dlf~fNn-------inLDpltEt~~~~Fyl~yl~--~~p-e~~~~a~~-p~~~imgyimgk~Eg-~~~~wh~ 70 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNN-------INLDPLTETFPISFYLIYLA--IWP-EDFIVAEA-PTGEIMGYIMGKVEG-KDTEWHG 70 (173)
T ss_pred ccccccHHHHHhhcc-------ccccccccccceehhHHHHH--hCh-HHhEeccC-CCCceEEEEeeeccc-cCcceee
Confidence 456666665544422 12222333333444444422 122 23455554 579999999885543 2234579
Q ss_pred EEeeEEeccchhccChHHHHHHHHh
Q psy631 85 YLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++..+.|.|+||+.|+|+.||+.+.
T Consensus 71 HvTAltVap~~Rrl~la~~lm~~le 95 (173)
T KOG3234|consen 71 HVTALTVAPDYRRLGLAAKLMDTLE 95 (173)
T ss_pred EEEEEEechhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 67
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=98.50 E-value=9.1e-07 Score=53.39 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=66.2
Q ss_pred eeeecCCccCHHHHHHHHHHHHh-hccCCCCC-------ccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEee
Q psy631 4 IVIRPAQKLDCGQIRALIQELAD-YQQMPDGP-------KIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYL 75 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~ 75 (110)
+.+||+...|++.+.++....-. +...|... .+++..|... . .+.+...+++.++++.|+++|++.+.-.
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~-~-~~ge~~Y~fVLEDsetG~VvG~saI~a~ 79 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGE-L-PPGEAGYLFVLEDSETGTVVGISAIEAA 79 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcc-c-CCCCccEEEEEEecCCceEEeEEEEEEe
Confidence 47899999999999998776422 22222221 2334444443 2 3445567788887678999999887721
Q ss_pred e---ccc-----------------------------CCeeEEEeeEEeccchhccChHHHHHH
Q psy631 76 Y---DCF-----------------------------EGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 76 ~---~~~-----------------------------~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
- .+| ......++.+|++|++|.-|.|+.|-+
T Consensus 80 vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 80 VGLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred eccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 0 011 124467888999999999988886643
No 68
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.47 E-value=4.3e-06 Score=50.68 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 54 LSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+++.. +|+||+.|.-...... ...| .+.++|+|||||+|+.+...++
T Consensus 166 ~Gf~i~~--~~~iVs~~~s~~~~~~----~~EI-~I~T~~~yR~kGLA~~~aa~~I 214 (265)
T PF12746_consen 166 FGFCILH--DGEIVSGCSSYFVYEN----GIEI-DIETHPEYRGKGLATAVAAAFI 214 (265)
T ss_dssp -EEEEEE--TTEEEEEEEEEEEETT----EEEE-EEEE-CCCTTSSHHHHHHHHHH
T ss_pred cEEEEEE--CCEEEEEEEEEEEECC----EEEE-EEEECHHhhcCCHHHHHHHHHH
Confidence 4677777 8999876655555433 2455 6899999999999998877665
No 69
>KOG3138|consensus
Probab=98.46 E-value=3.2e-07 Score=52.57 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=59.2
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC---
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE--- 80 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~--- 80 (110)
+.++..++.++..+..+.... .+..+....+... . .......+.+. ++..+|............
T Consensus 17 ~~l~~it~~nl~~~~~l~~~~-------fP~~y~~kfy~~~-~--~~~~~~~~A~~---~~~~v~a~~~k~~~~~~~~~r 83 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNEDI-------FPISYVDKFYPDV-L--SNGDLTQLAYY---NEIAVGAVACKLIKFVQNAKR 83 (187)
T ss_pred eeeccCCcchHHHHHHHhccc-------cCcchHHHHHHHH-H--hcCCHHHhhhh---ccccccceeeeehhhhhhhhh
Confidence 678888999988887765554 3333444444444 3 22223334444 455555555544322211
Q ss_pred ---CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 ---GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 ---~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+..+|..+.|.|.||.+|||+.|++.+.
T Consensus 84 ~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~ 115 (187)
T KOG3138|consen 84 LFGNRVIYILSLGVLPRYRNKGIGSKLLEFVK 115 (187)
T ss_pred hhccceeEEEeecccHHHHhcchHHHHHHHHH
Confidence 11489999999999999999999999875
No 70
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.28 E-value=3.8e-05 Score=41.89 Aligned_cols=92 Identities=18% Similarity=0.100 Sum_probs=61.2
Q ss_pred CccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCC--CCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEe
Q psy631 10 QKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDG--ERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLE 87 (110)
Q Consensus 10 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~ 87 (110)
.++|++.+.+++...+.-.......+.+.+.+... +.. ......++++.. +|++||+......... .+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~l~~~~~--~g~~va~~~~~~~~~~-----~~~~ 98 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDL-LRSLAESGRLRLFVLYD--GGEPVAFALGFRHGGT-----LYYW 98 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHH-HHhhccCCCEEEEEEEE--CCEEEEEEEEEEECCE-----EEEE
Confidence 46677777777665533220112223444444433 211 245577888888 9999999988776544 7777
Q ss_pred eEEeccchhccChHHHHHHHHh
Q psy631 88 DICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 88 ~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...++|+++..+.|..|+..++
T Consensus 99 ~~g~~~~~~~~~~~~~l~~~~i 120 (142)
T PF13480_consen 99 YGGYDPEYRKYSPGRLLLWEAI 120 (142)
T ss_pred EEEECHhhHhCCHHHHHHHHHH
Confidence 7888999999999999988775
No 71
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=98.23 E-value=1.5e-06 Score=41.99 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.8
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+-|..++|+|.+|++|||++||+.+.
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar 31 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAAR 31 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHH
Confidence 67889999999999999999999864
No 72
>KOG3397|consensus
Probab=98.18 E-value=2e-05 Score=44.56 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=37.4
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+++|-..+....+ ....+++..+.|+...||+|+|+.||+.+.
T Consensus 65 ~~~VigH~rLS~i~n--~~~al~VEsVVV~k~~RG~GFGk~lMk~~E 109 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPN--RDHALWVESVVVKKDQRGLGFGKFLMKSTE 109 (225)
T ss_pred ccceeeeeccccCCC--CCceeEEEEEEEehhhccccHHHHHHHHHH
Confidence 678899888876533 245699999999999999999999998764
No 73
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=0.0001 Score=41.83 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=32.9
Q ss_pred CcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 64 NKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 64 ~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+++||.+.+...........+.+ ..++.|+|+|+|+|+..+..++
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l 121 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEALRALL 121 (187)
T ss_pred CeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHHHHHH
Confidence 58999999986542111223444 5667999999999999998875
No 74
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.12 E-value=1.4e-05 Score=42.43 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=40.0
Q ss_pred EEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 55 STVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 55 ~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.|...- +|.+||++.+-........-..-+..+++...|||+|+|++..+++.
T Consensus 39 ~~~~~~--~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If 91 (143)
T COG5628 39 AWLFRI--GGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIF 91 (143)
T ss_pred eeEEEE--CCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHH
Confidence 345555 89999999887554332233467788999999999999999988763
No 75
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.09 E-value=9.5e-06 Score=53.58 Aligned_cols=56 Identities=14% Similarity=0.323 Sum_probs=39.2
Q ss_pred eEEEEEeC-CCCcEEEEEEEEeeecc-c---CCeeEEEeeEEec-----------cchhccChHHHHHHHHh
Q psy631 54 LSTVAEDT-KTNKLVGYTLFYYLYDC-F---EGKYLYLEDICVT-----------EAYRKKGFGAALFESVV 109 (110)
Q Consensus 54 ~~~~~~~~-~~~~ivG~~~~~~~~~~-~---~~~~~~i~~~~v~-----------p~~rg~Gig~~ll~~~~ 109 (110)
..|..+.+ +++.++|++.+...... . ....++|..+.|. |+|||+|+|++||+.++
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae 483 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAE 483 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHH
Confidence 44555432 25789999999876432 1 1235677777644 99999999999999875
No 76
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=98.05 E-value=6.7e-06 Score=41.59 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=32.7
Q ss_pred CCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 62 KTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 62 ~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++|++|.+...... +.+..-|+.|+|||||+.+.++...+
T Consensus 6 peG~PVSW~lmdqt--------ge~rmgyTlPeyR~~G~~~~v~~~~~ 45 (89)
T PF08444_consen 6 PEGNPVSWSLMDQT--------GEMRMGYTLPEYRGQGLMSQVMYHLA 45 (89)
T ss_pred CCCCEeEEEEeccc--------ccccccccCHhHhcCCHHHHHHHHHH
Confidence 48999888776543 78888899999999999999887653
No 77
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.89 E-value=0.00087 Score=38.59 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=32.4
Q ss_pred CCcEEEEEEEEeeeccc---CCeeEEEeeEEeccchhccChHHHHHH
Q psy631 63 TNKLVGYTLFYYLYDCF---EGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~---~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
..++|+.+.+....+.. .++..+++..|++|+|||+|+++.+-+
T Consensus 55 T~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~ 101 (181)
T PF06852_consen 55 TDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDD 101 (181)
T ss_pred CCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHH
Confidence 67888888776543321 145689999999999999999974433
No 78
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.82 E-value=1.4e-05 Score=41.67 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=19.6
Q ss_pred EEeccchhccChHHHHHHHHh
Q psy631 89 ICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 89 ~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++|+|++||+|+|+.|++.++
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~ 107 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAAL 107 (156)
T ss_pred EEecchhhccchHHHHHHHHH
Confidence 999999999999999998765
No 79
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.81 E-value=0.0013 Score=36.92 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=48.9
Q ss_pred CCccchhHHhhhhcCCCCC-ceeEEEEEeCCCCcEEEEEEEEeeecccCC---eeEEEeeEEeccchhccChHHHHHHHH
Q psy631 33 GPKIGADVLERDGFDGERP-LFLSTVAEDTKTNKLVGYTLFYYLYDCFEG---KYLYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~---~~~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
...++.+.+... +..+.. ....+.++...++++|||+...+..-.-.+ ..++|.-+.|++..|.++++-.|++.+
T Consensus 57 Rf~YS~efL~Wa-L~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEI 135 (162)
T PF01233_consen 57 RFDYSKEFLKWA-LKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEI 135 (162)
T ss_dssp EE---HHHHHHH-HTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHH
T ss_pred EeeCCHHHHhhe-eeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHH
Confidence 456778887777 412221 122333333237999999999877543333 348888999999999999999999876
Q ss_pred h
Q psy631 109 V 109 (110)
Q Consensus 109 ~ 109 (110)
.
T Consensus 136 t 136 (162)
T PF01233_consen 136 T 136 (162)
T ss_dssp H
T ss_pred H
Confidence 4
No 80
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.80 E-value=0.00037 Score=37.17 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=32.9
Q ss_pred CcEEEEEEEEeee-----cccC----CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 64 NKLVGYTLFYYLY-----DCFE----GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 64 ~~ivG~~~~~~~~-----~~~~----~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.++|++-+.... ..-. .+...|-++||+++.|++|+|++|+++++
T Consensus 18 g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML 72 (120)
T PF05301_consen 18 GAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHML 72 (120)
T ss_pred ceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHH
Confidence 5688888776432 1100 11237778999999999999999999875
No 81
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.77 E-value=0.00017 Score=49.46 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=44.6
Q ss_pred CCCceeEEEEEeCCCCcEEEEEEEEeeecc------------c--------------------CCeeEEEeeEEeccchh
Q psy631 49 ERPLFLSTVAEDTKTNKLVGYTLFYYLYDC------------F--------------------EGKYLYLEDICVTEAYR 96 (110)
Q Consensus 49 ~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~------------~--------------------~~~~~~i~~~~v~p~~r 96 (110)
+.|...++++.. +++++|+.+.+...... . .-..+.|..|+|+|++|
T Consensus 466 DaP~h~~~al~~-~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q 544 (758)
T COG1444 466 DAPHHHIFALRA-PEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQ 544 (758)
T ss_pred cCCCCeeEEEEc-CCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHH
Confidence 556677788876 13488888888754322 0 01347899999999999
Q ss_pred ccChHHHHHHHHh
Q psy631 97 KKGFGAALFESVV 109 (110)
Q Consensus 97 g~Gig~~ll~~~~ 109 (110)
++|||+++++.++
T Consensus 545 ~~GiGsrlL~~l~ 557 (758)
T COG1444 545 RMGIGSRLLALLI 557 (758)
T ss_pred hcCHHHHHHHHHH
Confidence 9999999999875
No 82
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00053 Score=40.53 Aligned_cols=93 Identities=23% Similarity=0.221 Sum_probs=58.7
Q ss_pred cceeeecCC-ccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 2 GDIVIRPAQ-KLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 2 m~~~i~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
|++.+|+++ +.+++++.++....|..+.....+ ...+... .......+-|+. .+|++||.....+. ...
T Consensus 1 m~vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~---~d~i~al----~~~GGlvlgAf~-~dg~lVGls~G~pg--~r~ 70 (266)
T COG3375 1 MKVVVRRLTDPAELDEAEDVQASAWGSEDRDGAP---ADTIRAL----RYHGGLVLGAFS-ADGRLVGLSYGYPG--GRG 70 (266)
T ss_pred CceeEEecCCHHHHHHHHHHHHHHhCccccccch---HHHHHHH----HhcCCeEEEEEc-CCCcEEEEEeccCC--cCC
Confidence 667777665 667777777777775543322222 2223222 223345666765 25599999888772 112
Q ss_pred Ce-eEEEeeEEeccchhccChHHHH
Q psy631 81 GK-YLYLEDICVTEAYRKKGFGAAL 104 (110)
Q Consensus 81 ~~-~~~i~~~~v~p~~rg~Gig~~l 104 (110)
++ ..|-+.+.|.|++|+.|+|-+|
T Consensus 71 g~~y~ySH~~gV~e~~k~sglg~aL 95 (266)
T COG3375 71 GSLYLYSHMLGVREEVKGSGLGVAL 95 (266)
T ss_pred Cceeeeeeehhccccccccchhhhh
Confidence 22 4777789999999999999776
No 83
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.66 E-value=0.00042 Score=36.04 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=35.5
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++...|++.+..... .+...++..+.|.|..||+|+|..|++.+.
T Consensus 16 ~e~y~~~aIvt~~~~--~~~~~yLdKfaV~~~~~g~gvad~vf~~i~ 60 (99)
T cd04264 16 SEGYNAAAIVTYEGV--NNGVPYLDKFAVSSSAQGEGTSDALWRRLR 60 (99)
T ss_pred eCCceEEEEEeccCC--CCCceEEEEEEEchhhhhcChHHHHHHHHH
Confidence 566677777765431 134589999999999999999999999876
No 84
>KOG4144|consensus
Probab=97.56 E-value=3.7e-05 Score=42.72 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCcEEEEEEEEeeeccc-----------CCeeEEEeeEEeccchhccChHHHHHHH
Q psy631 63 TNKLVGYTLFYYLYDCF-----------EGKYLYLEDICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~-----------~~~~~~i~~~~v~p~~rg~Gig~~ll~~ 107 (110)
.+.+||.+.....+... .+.+..|+.+.|+|+||.+|+|..|+..
T Consensus 70 ~~tLIghIigs~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ 125 (190)
T KOG4144|consen 70 EGTLIGHIIGSLWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWR 125 (190)
T ss_pred cccceehhhcccCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHH
Confidence 57788887776443221 1456999999999999999999999875
No 85
>KOG4135|consensus
Probab=97.47 E-value=0.005 Score=34.27 Aligned_cols=105 Identities=9% Similarity=0.150 Sum_probs=60.9
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCcc--chhHHhhhhcCCCCCceeEEEEEe--CCC-----CcEEEEEEEEe
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKI--GADVLERDGFDGERPLFLSTVAED--TKT-----NKLVGYTLFYY 74 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~ivG~~~~~~ 74 (110)
+.+.|.++...+.+-+|.+.- +....+.+.+. .++.-.+..+..+.....++|... .+. ...||-+.++.
T Consensus 14 vILVPYe~~HV~kYHeWMknE-elr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFl 92 (185)
T KOG4135|consen 14 VILVPYEPCHVPKYHEWMKNE-ELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFL 92 (185)
T ss_pred EEEeeccccchhHHHhHhhhH-HHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEE
Confidence 567788888888888775531 11112222222 233222222323334455555421 001 23578777776
Q ss_pred eecccC------CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 75 LYDCFE------GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 75 ~~~~~~------~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...+.. -..+.+.-+.-.|..||+|+|+..+..++
T Consensus 93 t~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml 133 (185)
T KOG4135|consen 93 TTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAML 133 (185)
T ss_pred ecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHH
Confidence 654432 22477888899999999999999988765
No 86
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=97.45 E-value=0.00011 Score=39.81 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=58.8
Q ss_pred cceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecc---
Q psy631 2 GDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDC--- 78 (110)
Q Consensus 2 m~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~--- 78 (110)
|++.++.....|...+..+-++... ...+...+.+... . . ..|+++. +|.+.|++..+-....
T Consensus 6 mp~~~~D~~apd~aavLaLNNeha~-----elswLe~erL~~l-~-~-----eAF~ArR--~G~l~afl~tFd~~a~ydS 71 (167)
T COG3818 6 MPILIRDVRAPDLAAVLALNNEHAL-----ELSWLELERLYRL-Y-K-----EAFVARR--DGNLAAFLVTFDSSARYDS 71 (167)
T ss_pred cceehhhhcCCchhhHHhccchhhh-----hccccCHHHHHHH-H-H-----HHHHHhh--ccchhhheeeccccccCCC
Confidence 5567777777788888877665421 1122233333332 2 1 1257777 7777777665533211
Q ss_pred ----cC----CeeEEEeeEEeccchhccChHHHHHHHH
Q psy631 79 ----FE----GKYLYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 79 ----~~----~~~~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
|- ....|++.+.|....||+|+|+.+-+-+
T Consensus 72 pNFlWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dl 109 (167)
T COG3818 72 PNFLWFRERYENFFYVDRVVVASRARGRGVARALYADL 109 (167)
T ss_pred CceeehhhhCCceEEEEEEEEEecccccchHHHHHHHH
Confidence 11 3458999999999999999999987654
No 87
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=97.40 E-value=0.0015 Score=37.78 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEeeEEeccchhccChHHHHHHH
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~ 107 (110)
...+.-+-|.|.||++|+|+.|++.
T Consensus 80 ~~NLsCIl~lP~yQrkGyG~~LI~f 104 (188)
T PF01853_consen 80 NNNLSCILTLPPYQRKGYGRFLIDF 104 (188)
T ss_dssp -EEESEEEE-GGGTTSSHHHHHHHH
T ss_pred CeeEeehhhcchhhhcchhhhhhhh
Confidence 3566678899999999999999875
No 88
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.39 E-value=0.0012 Score=34.28 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++..-|++.+.+... +...++..+.|.|..||+|+|..|++.+.
T Consensus 17 ~e~y~~~aivt~~~~---~~~~yLdKfaV~~~~~g~gv~d~vf~~i~ 60 (99)
T cd04265 17 SEGYNAAAIVTNEEV---DGVPYLDKFAVSSSAQGEGTGEALWRRLR 60 (99)
T ss_pred eCCCcEEEEEeccCC---CCceEEEEEEEchhhhhcChHHHHHHHHH
Confidence 344445555544321 24589999999999999999999999875
No 89
>KOG4601|consensus
Probab=97.35 E-value=0.0032 Score=37.39 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=33.6
Q ss_pred CcEEEEEEEEeee-----cc---cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 64 NKLVGYTLFYYLY-----DC---FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 64 ~~ivG~~~~~~~~-----~~---~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.+.|++-+.+.. +. ..+....|-++||+++.|++|.|++|++.++
T Consensus 81 s~l~GllKVG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl 134 (264)
T KOG4601|consen 81 SILKGLLKVGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYML 134 (264)
T ss_pred hheeeeehccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHH
Confidence 3567776655332 21 1134578889999999999999999999876
No 90
>KOG2779|consensus
Probab=96.93 E-value=0.011 Score=37.49 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCccchhHHhhhhcCCCCC-ceeEEEEEeCCCCcEEEEEEEEeeecccCC---eeEEEeeEEeccchhccChHHHHHHHH
Q psy631 33 GPKIGADVLERDGFDGERP-LFLSTVAEDTKTNKLVGYTLFYYLYDCFEG---KYLYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~---~~~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
...++.+.+... +..++. ...++..+...++++|||+...+..-.-.+ +.+.|.-++|+...|+++++-.|++.+
T Consensus 114 rf~Ys~eFl~Wa-l~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEI 192 (421)
T KOG2779|consen 114 RFDYSPEFLKWA-LQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREI 192 (421)
T ss_pred hhhccHHHHHhh-hcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHH
Confidence 345777877777 423322 123333443236799999998876433232 348899999999999999999999876
Q ss_pred h
Q psy631 109 V 109 (110)
Q Consensus 109 ~ 109 (110)
-
T Consensus 193 T 193 (421)
T KOG2779|consen 193 T 193 (421)
T ss_pred H
Confidence 3
No 91
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=96.87 E-value=0.0011 Score=41.82 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=40.5
Q ss_pred eEEEEEeCCCCcEEEEEEEEeeecccC---CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 54 LSTVAEDTKTNKLVGYTLFYYLYDCFE---GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~---~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++.++ +.++++-+...+.---|. -+...|..+.+.|.|||+|.-++||.+.+
T Consensus 40 n~~vi~~--nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sL 96 (389)
T COG4552 40 NSYVIYM--NQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSL 96 (389)
T ss_pred cceEEee--hhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHH
Confidence 3567777 888888776654321122 23588999999999999999999999875
No 92
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.85 E-value=0.021 Score=35.46 Aligned_cols=38 Identities=11% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++++|++..+.-. -|..++|+|.+||-|++-+|+.+++
T Consensus 45 ~~~iiacGsiaGn---------vikcvAvs~s~qGeGl~lkl~TeLi 82 (352)
T COG3053 45 NEEIIACGSIAGN---------VIKCVAVSESLQGEGLALKLVTELI 82 (352)
T ss_pred CCcEEEecccccc---------eeEEEEechhcccccHHHHHHHHHH
Confidence 6999988876532 5778899999999999999998876
No 93
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=96.80 E-value=0.017 Score=33.64 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=47.3
Q ss_pred eecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecc
Q psy631 6 IRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDC 78 (110)
Q Consensus 6 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (110)
+|+++++|++++.++++.+.. ........+++.+....+ ....-..++|.++ ++|+|-.++.+...++.
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~--~f~l~~~fs~eev~Hw~l-p~~~Vv~syVve~-~~~~ITDf~SFY~Lpst 99 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLK--KFDLAPVFSEEEVKHWFL-PRKNVVYSYVVED-PDGKITDFFSFYSLPST 99 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHT--TSSEEEE--HHHHHHHHS--BTTTEEEEEEEE-TTSEEEEEEEEEEEEEE
T ss_pred cccCchhhHHHHHHHHHHHHH--hcccccccCHHHHHhhcc-cCCCeEEEEEEec-CCCceeeEEEEeeccee
Confidence 799999999999999999843 334455567888877744 5555567788887 24689999988877553
No 94
>KOG2747|consensus
Probab=96.80 E-value=0.0032 Score=40.33 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEeeEEeccchhccChHHHHHHHH
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
..+.-+-|.|.||++|+|+.|++..
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFS 285 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFS 285 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhh
Confidence 4555677999999999999999753
No 95
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.77 E-value=0.03 Score=30.57 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=40.8
Q ss_pred hhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHH
Q psy631 38 ADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~ 107 (110)
.+.+..... ........+.... +|++||++.+....+. .--.-.+-+|++..+++|+-.+-.
T Consensus 25 ~~~y~~fl~-~~~~~t~~~~~~~--~~kLiav~v~D~l~~g-----lSaVY~fyDPd~~~~SlG~~~iL~ 86 (128)
T PF04377_consen 25 QEQYRRFLC-SSPLGTYHLEYRL--DGKLIAVAVVDILPDG-----LSAVYTFYDPDYSKRSLGTYSILR 86 (128)
T ss_pred HHHHHHHHh-CCCCCCEEEEEEe--CCeEEEEEEeecccch-----hhheeeeeCCCccccCcHHHHHHH
Confidence 666666633 3333455555667 9999999888766443 222234569999999999876644
No 96
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=96.74 E-value=0.0066 Score=37.35 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=27.4
Q ss_pred CcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHH
Q psy631 64 NKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 64 ~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
-.+|||..=.-. ......+.-+-|.|.||++|+|+.|++..
T Consensus 140 ~h~vGYFSKEK~----s~~~nNLaCIltLPpyQrkGyG~~LI~fS 180 (290)
T PLN03238 140 SHIVGYFSKEKV----SAEDYNLACILTLPPYQRKGYGKFLISFA 180 (290)
T ss_pred cEEEEEeceecc----ccCCCcEEEEEecChhhhccHhHhHHHHH
Confidence 357776633221 11124466678999999999999999753
No 97
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=96.70 E-value=0.015 Score=30.23 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=37.8
Q ss_pred CceeEEEEEeCCCC-cEEEEEEEEeeeccc-------------------CCeeEEEeeEEeccchhccChHHHHH
Q psy631 51 PLFLSTVAEDTKTN-KLVGYTLFYYLYDCF-------------------EGKYLYLEDICVTEAYRKKGFGAALF 105 (110)
Q Consensus 51 ~~~~~~~~~~~~~~-~ivG~~~~~~~~~~~-------------------~~~~~~i~~~~v~p~~rg~Gig~~ll 105 (110)
+.+..+++.+ ++ ++||++.+....... ..+.+++..+.|+|+||+......|+
T Consensus 28 ~~~~h~lv~~--~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 28 EHSVHLLVRD--KNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCccEEEEEE--CCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 4455566655 44 499999988553321 13568999999999999998887765
No 98
>PLN03239 histone acetyltransferase; Provisional
Probab=96.55 E-value=0.01 Score=37.56 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEeeEEeccchhccChHHHHHHHH
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
..+.-+-|.|.||++|+|+.|++..
T Consensus 214 ~NLaCIltLPpyQrkGyG~lLI~fS 238 (351)
T PLN03239 214 YNLACILTFPAHQRKGYGRFLIAFS 238 (351)
T ss_pred CceEEEEecChhhhcchhhhhHhhh
Confidence 3566678999999999999999753
No 99
>PTZ00064 histone acetyltransferase; Provisional
Probab=96.49 E-value=0.0075 Score=39.84 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=27.5
Q ss_pred CcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHH
Q psy631 64 NKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 64 ~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
-.+|||..=.-. ......+..|-|.|.||++|+|+.|++..
T Consensus 369 ~HiVGYFSKEK~----S~~~nNLACILtLPpyQRKGYGklLIdfS 409 (552)
T PTZ00064 369 CHIVGYFSKEKV----SLLHYNLACILTLPCYQRKGYGKLLVDLS 409 (552)
T ss_pred cEEEEEeccccc----CcccCceEEEEecchhhhcchhhhhhhhh
Confidence 356776532211 11224566678999999999999999753
No 100
>KOG2696|consensus
Probab=96.49 E-value=0.0031 Score=39.96 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=30.8
Q ss_pred EEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 66 LVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 66 ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+|+..+.-...-..+-...|..+-+.|.||++|+|+.|++.+.
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~ 243 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIA 243 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHH
Confidence 45555554332221233477788899999999999999999875
No 101
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=96.43 E-value=0.072 Score=30.60 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEec
Q psy631 13 DCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVT 92 (110)
Q Consensus 13 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~ 92 (110)
|.+.+.+++... + ......+.+... + +... ...++ ++..-|.+.+.+..+...+..+++..+.|.
T Consensus 33 d~~kL~~ll~~s--f-----~~~~~v~~yl~~-l-~~~~-~~iy~-----d~~y~~~AIVt~e~~~~~~~v~yLdKFav~ 97 (170)
T PF04768_consen 33 DLDKLRALLERS--F-----GGKLDVDHYLDR-L-NNRL-FKIYV-----DEDYEGAAIVTPEGPDSNGPVPYLDKFAVS 97 (170)
T ss_dssp -HHHHHHHHHHH--S-----TSSSBHTTHHHH-H-HTS--SEEEE-----ETTSSEEEEEEEE-SCTCTSEEEEEEEEE-
T ss_pred CHHHHHHHHHhc--c-----cccccHHHHHHH-h-hccc-eEEEE-----eCCceEEEEEEecCCCCCCCCeEEEEEEec
Confidence 778888877776 2 233344444444 3 1221 22222 344556666665433333567999999999
Q ss_pred cchhccChHHHHHHHHh
Q psy631 93 EAYRKKGFGAALFESVV 109 (110)
Q Consensus 93 p~~rg~Gig~~ll~~~~ 109 (110)
|..||.|++..+++.+.
T Consensus 98 ~~~~g~gv~D~vf~~i~ 114 (170)
T PF04768_consen 98 KSAQGSGVADNVFNAIR 114 (170)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHH
Confidence 99999999999998874
No 102
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.23 E-value=0.11 Score=30.84 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=28.8
Q ss_pred eeEEEEEeCCCCcEEEEEEEEeeeccc-----------------CCeeEEEeeEEeccchh
Q psy631 53 FLSTVAEDTKTNKLVGYTLFYYLYDCF-----------------EGKYLYLEDICVTEAYR 96 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~~~~~~~-----------------~~~~~~i~~~~v~p~~r 96 (110)
..++++.+ ++|+++|++.+.+...+. ....+++..++|+|+++
T Consensus 53 ~~yll~~~-~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~ 112 (207)
T PRK13834 53 PTYILAIS-DSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALA 112 (207)
T ss_pred CEEEEEEe-CCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEccccc
Confidence 34444442 278999999987552221 13469999999999864
No 103
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=96.18 E-value=0.011 Score=38.69 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=27.2
Q ss_pred CcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHH
Q psy631 64 NKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 64 ~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~ 107 (110)
-.+|||..=--. ......+.-|-|.|.||++|+|+.|++.
T Consensus 291 ~h~vGyFSKEk~----s~~~~NLaCIltlP~yQrkGyG~~LI~~ 330 (450)
T PLN00104 291 CHMVGYFSKEKH----SEEDYNLACILTLPPYQRKGYGKFLIAF 330 (450)
T ss_pred cEEEEEeccccc----CcCCCceEEEEecchhhhcchhheehhh
Confidence 367777632211 1112456667899999999999999875
No 104
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=96.16 E-value=0.055 Score=31.39 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=36.8
Q ss_pred CceeEEEEEeCCCCcEEEEEEEEeeeccc----------------C-CeeEEEeeEEeccchhcc------ChHHHHHHH
Q psy631 51 PLFLSTVAEDTKTNKLVGYTLFYYLYDCF----------------E-GKYLYLEDICVTEAYRKK------GFGAALFES 107 (110)
Q Consensus 51 ~~~~~~~~~~~~~~~ivG~~~~~~~~~~~----------------~-~~~~~i~~~~v~p~~rg~------Gig~~ll~~ 107 (110)
+...++++.+ +|+++|++.+.+...+. . ...+++..++|+|+.++. -+...|+..
T Consensus 43 ~~~~ylv~~~--~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~ 120 (182)
T PF00765_consen 43 PDAVYLVALD--DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLG 120 (182)
T ss_dssp TT-EEEEEEE--TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHH
T ss_pred CCCeEEEEEE--CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHH
Confidence 4456667777 89999999999754331 1 346999999999985422 345566655
Q ss_pred Hh
Q psy631 108 VV 109 (110)
Q Consensus 108 ~~ 109 (110)
++
T Consensus 121 ~~ 122 (182)
T PF00765_consen 121 MV 122 (182)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 105
>KOG2779|consensus
Probab=96.04 E-value=0.046 Score=34.83 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=48.6
Q ss_pred eecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecc
Q psy631 6 IRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDC 78 (110)
Q Consensus 6 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (110)
+|++++.|.+.+.+++..+.. +.......+++.+....+ ...+-..++|++. ++|+|-+|+.+...+.+
T Consensus 263 ~R~me~kDvp~V~~Ll~~yl~--qf~la~~f~~eev~Hwf~-p~e~VV~syVves-p~g~ITDF~SFy~lpsT 331 (421)
T KOG2779|consen 263 LREMEEKDVPAVFRLLRNYLK--QFELAPVFDEEEVEHWFL-PRENVVYSYVVES-PNGKITDFCSFYSLPST 331 (421)
T ss_pred cccccccchHHHHHHHHHHHH--heecccccCHHHhHhhcc-cccceEEEEEEEC-CCCcccceeeEEecccc
Confidence 688999999999999988733 333444556777776633 4444455666664 58999999998876553
No 106
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=95.52 E-value=0.015 Score=36.74 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEeeEEeccchhccChHHHHHHH
Q psy631 84 LYLEDICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~ 107 (110)
..+..+-+.|.||++|+|+.|++.
T Consensus 263 yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred CceEEEEecChhHhcccceEeeee
Confidence 455667799999999999988763
No 107
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=95.46 E-value=0.3 Score=29.74 Aligned_cols=86 Identities=12% Similarity=-0.116 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhc-cCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEec
Q psy631 14 CGQIRALIQELADYQ-QMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVT 92 (110)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~ 92 (110)
-++-.+|+..+.... ....-.+.+.+.+..... +.......+.... +|++||++.+....+. .--.-.+-+
T Consensus 105 ~~E~~~Ly~rY~~~rH~dg~m~~~~~~~y~~Fl~-~~~~~t~~~ey~~--~g~LiaVav~D~l~d~-----lSAVY~FyD 176 (240)
T PRK01305 105 TEEHYALYRRYLRARHADGGMDPPSRDQYAQFLE-DSWVNTRFIEFRG--DGKLVAVAVTDVLDDG-----LSAVYTFYD 176 (240)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHh-cCCCCcEEEEEEe--CCeEEEEEEEeccCCc-----eeeEEEeeC
Confidence 344556666553321 112222345666666633 2222344444556 8999999988766443 222245679
Q ss_pred cchhccChHHHHHHH
Q psy631 93 EAYRKKGFGAALFES 107 (110)
Q Consensus 93 p~~rg~Gig~~ll~~ 107 (110)
|++-.+++|+-.+-.
T Consensus 177 Pd~~~~SLG~~~iL~ 191 (240)
T PRK01305 177 PDEEHRSLGTFAILW 191 (240)
T ss_pred CCccccCCHHHHHHH
Confidence 999999999876644
No 108
>KOG2036|consensus
Probab=94.82 E-value=0.026 Score=39.16 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=23.3
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.|-.++|+|+|++.|+|++.++.+.
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~ 640 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLT 640 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHH
Confidence 78889999999999999999988664
No 109
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=94.19 E-value=0.73 Score=28.06 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCcEEEEEEEEeee---c--------c---------------cCCeeEEEeeEEeccchhcc
Q psy631 54 LSTVAEDTKTNKLVGYTLFYYLY---D--------C---------------FEGKYLYLEDICVTEAYRKK 98 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~---~--------~---------------~~~~~~~i~~~~v~p~~rg~ 98 (110)
..+++.+.++|++||++.+.+.. + . .....+++..++|+|++|++
T Consensus 56 ~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r 126 (241)
T TIGR03694 56 VHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRR 126 (241)
T ss_pred cEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCC
Confidence 34444321258999999998641 0 0 01245899999999999974
No 110
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=94.02 E-value=0.46 Score=30.83 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=41.0
Q ss_pred CccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeeccc
Q psy631 10 QKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCF 79 (110)
Q Consensus 10 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~ 79 (110)
++++++.+..++..... ........+.+.|... .+...+...++++.. +|++||+..+.......
T Consensus 211 ~~~~~~~f~~~Y~~Ty~--k~~~~~yLt~~FF~~l-~~~m~~~~~l~~A~~--~g~~Va~aL~l~~~~~L 275 (370)
T PF04339_consen 211 TDEDWDRFYRLYQNTYA--KRWGRPYLTREFFEQL-AETMPEQVVLVVARR--DGQPVAFALCLRGDDTL 275 (370)
T ss_pred CHHHHHHHHHHHHHHHH--hhCCChhhcHHHHHHH-HHhCcCCEEEEEEEE--CCeEEEEEEEEEeCCEE
Confidence 44556666666666422 2222334456666555 323455677888888 99999999998876553
No 111
>KOG3014|consensus
Probab=93.90 E-value=0.86 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.1
Q ss_pred eEEEeeEEeccchhccChHHHHHHHHh
Q psy631 83 YLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.+-|..++|.+-.|++|+++.|++.+.
T Consensus 183 ~~GIsRIWV~s~~Rr~gIAs~lldva~ 209 (257)
T KOG3014|consen 183 ICGISRIWVSSLRRRKGIASLLLDVAR 209 (257)
T ss_pred EeeeEEEEeehhhhhhhhHHHHHHHHH
Confidence 478889999999999999999998764
No 112
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=93.81 E-value=0.93 Score=29.58 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEec
Q psy631 13 DCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVT 92 (110)
Q Consensus 13 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~ 92 (110)
|++.+..++++.+. -......+..+ + ..+-...+| .|.-.|.+.+.+... ..+...|++.++|.
T Consensus 346 dl~r~q~LI~~SFk-------RTLd~h~y~~r-~--~~~La~~iV-----sgdY~g~aIlTyegs-~~~~vpYLDKfAVl 409 (495)
T COG5630 346 DLPRLQHLIQSSFK-------RTLDPHYYETR-I--NTPLARAIV-----SGDYRGAAILTYEGS-GENNVPYLDKFAVL 409 (495)
T ss_pred CcHHHHHHHHHHHh-------hccCHHHHHHh-c--cCcceeEEe-----eccceeeEEEEeecc-CCCCCcceeeeecc
Confidence 55667677666522 12334455454 3 233233333 455567777776522 12346899999999
Q ss_pred cchhc-cChHHHHHHHH
Q psy631 93 EAYRK-KGFGAALFESV 108 (110)
Q Consensus 93 p~~rg-~Gig~~ll~~~ 108 (110)
++.|| -||+..++.-+
T Consensus 410 ~~aQGs~gisd~vfniM 426 (495)
T COG5630 410 DDAQGSEGISDAVFNIM 426 (495)
T ss_pred ccccccchHHHHHHHHH
Confidence 99999 89999988755
No 113
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=93.66 E-value=1.1 Score=28.47 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=62.0
Q ss_pred ecCCccCHHHHHHHHHHHH-hhccCCCCCccchhHHhhhhcCCCCC-ceeEEEEEeCCCCcEEEEEEEEeeecccCC---
Q psy631 7 RPAQKLDCGQIRALIQELA-DYQQMPDGPKIGADVLERDGFDGERP-LFLSTVAEDTKTNKLVGYTLFYYLYDCFEG--- 81 (110)
Q Consensus 7 ~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~--- 81 (110)
..+...+++.+..++.+.. +-........++.+.++.. +..+.. ...++..+.-+..++|||+...+..-..++
T Consensus 85 dv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wa-l~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~ 163 (451)
T COG5092 85 DVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWA-LDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRS 163 (451)
T ss_pred eccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHh-hcCCCCceeeEEEEEEcccceeEEEEecceeEEEEccccc
Confidence 3344556666666666531 1111123345667777666 423332 233444444124599999988765433332
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+.+.-++|+.+.|++-+.-.|++.+-
T Consensus 164 ~~~evNFLCihk~lRsKRltPvLIkEiT 191 (451)
T COG5092 164 SVLEVNFLCIHKELRSKRLTPVLIKEIT 191 (451)
T ss_pred ccceEEEEEEehhhhhCccchHHHHHHH
Confidence 3578888999999999999999988763
No 114
>KOG3698|consensus
Probab=93.40 E-value=0.28 Score=33.60 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=55.7
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCC----CccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeeccc
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDG----PKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCF 79 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~ 79 (110)
+.||+...+|-+.+..+...+..-.....+ .......+...++ ...+ ..|+++++ ++++|+||+....+....
T Consensus 680 y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggll-sls~-~lC~v~~d-e~~~i~gYa~a~~Dvt~F 756 (891)
T KOG3698|consen 680 YDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLL-SLSE-HLCEVVDD-EGHKIVGYASAHFDVTLF 756 (891)
T ss_pred EeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhhee-ccCh-hheeeeec-CCCceeEEeeeecccchh
Confidence 689999999999999888776321111111 1122222222223 2223 46777776 467899999998775442
Q ss_pred CCeeEEEeeE-Eeccchhc----cChHHHHHH
Q psy631 80 EGKYLYLEDI-CVTEAYRK----KGFGAALFE 106 (110)
Q Consensus 80 ~~~~~~i~~~-~v~p~~rg----~Gig~~ll~ 106 (110)
. +.+.|.+. .....||| .|=|+...+
T Consensus 757 ~-rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~ 787 (891)
T KOG3698|consen 757 S-RNFLITWKEKLKEKYRGLIEPIGSGKLTDE 787 (891)
T ss_pred h-hceeeeeHHHHHHHhhccccccCCchhHHH
Confidence 2 22333322 34566776 344554443
No 115
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.37 E-value=0.056 Score=35.65 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.9
Q ss_pred EEEeeEEeccchhccChHHHHHHHHh
Q psy631 84 LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.|..+.|+|+||+-|+|..-+..+.
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ 267 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAAL 267 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHH
Confidence 67889999999999999998887654
No 116
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=93.08 E-value=1.4 Score=27.91 Aligned_cols=88 Identities=9% Similarity=-0.046 Sum_probs=50.9
Q ss_pred ccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEE-eCCCCcEEEEEEEEeeecccCCeeEEEeeE
Q psy631 11 KLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAE-DTKTNKLVGYTLFYYLYDCFEGKYLYLEDI 89 (110)
Q Consensus 11 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~ 89 (110)
.+|++.+.+++.....-.. . ...+.+.+... .+.-.+...++++. . +|+++|.+.+...... .+....
T Consensus 157 ~~~l~~F~~l~~~t~~r~g--~-p~~~~~~f~~l-~~~~~~~~~l~~a~~~--~g~~va~~l~~~~~~~-----~~~~~~ 225 (330)
T TIGR03019 157 DGDLDRFYDVYAENMRDLG--T-PVFSRRYFRLL-KDVFGEDCEVLTVRLG--DGVVASAVLSFYFRDE-----VLPYYA 225 (330)
T ss_pred CCcHHHHHHHHHHHHhcCC--C-CCCCHHHHHHH-HHhcccCEEEEEEEeC--CCCEEEEEEEEEeCCE-----EEEEec
Confidence 3567888887776533222 1 23445555443 21122345566677 6 8888887666554332 333345
Q ss_pred EeccchhccChHHHHHHHHh
Q psy631 90 CVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 90 ~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+++++..+-+..|+-+++
T Consensus 226 g~~~~~~~~~~~~lL~w~~i 245 (330)
T TIGR03019 226 GGLREARDVAANDLMYWELM 245 (330)
T ss_pred cChHHHHhhChHHHHHHHHH
Confidence 66889998887777765554
No 117
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=92.42 E-value=0.93 Score=24.11 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCcEEEEEEEEeeeccc--CCeeEEEeeEEeccchhc-cChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCF--EGKYLYLEDICVTEAYRK-KGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~--~~~~~~i~~~~v~p~~rg-~Gig~~ll~~~~ 109 (110)
++.--|.+.+....++- .+..+++..+.|.+..|| .|++..+++.+.
T Consensus 17 ~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~ 66 (108)
T cd04266 17 AGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAML 66 (108)
T ss_pred eCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHH
Confidence 34444555554332111 134589999999999997 899999999875
No 118
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.88 E-value=0.72 Score=31.11 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=64.0
Q ss_pred cceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeC---CCCcEEEEEEEEeeecc
Q psy631 2 GDIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDT---KTNKLVGYTLFYYLYDC 78 (110)
Q Consensus 2 m~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ivG~~~~~~~~~~ 78 (110)
|.++++.....+++.+.++.+..-+|.. ....++++...+. ..+++...|-..-. .++-+||++.+......
T Consensus 412 m~l~vs~~de~~i~RIsQLtqkTNQFnl--TtkRy~e~dV~~~---~~~~~~li~sv~l~DKfgDnGiigvviv~kk~~~ 486 (574)
T COG3882 412 MRLTVSKFDEVNIPRISQLTQKTNQFNL--TTKRYNEEDVRQM---QEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKESE 486 (574)
T ss_pred EEEEEeeccccCcHHHHHHhhcccceee--chhhhcHHHHHHH---hhCCCeEEEEEEeccccccCceEEEEEEEecCCe
Confidence 5577888888899999998877655432 2334666666554 34555555544321 35778899888766544
Q ss_pred cCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 79 FEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 79 ~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++|..+...=.-=|+++-.+||..++
T Consensus 487 -----w~IDt~lmSCRVlgRkvE~~l~~~~~ 512 (574)
T COG3882 487 -----WFIDTFLMSCRVLGRKVEQRLMNSLE 512 (574)
T ss_pred -----EEhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555444458888888887664
No 119
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=91.86 E-value=0.68 Score=29.01 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=53.0
Q ss_pred eeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeE
Q psy631 5 VIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYL 84 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (110)
.++++..=..+++++++.++.+-.-.........+.+.+. +..-.+.....|+.- +|+++++-.+....++. .-..
T Consensus 156 ~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~-f~~Lr~l~fG~VLfl--~~~PcA~qlv~k~eSp~-wi~~ 231 (298)
T PRK15312 156 SVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANF-FSQLRHLLFGHILYI--EGIPCAFDIVLKSESQM-NVYF 231 (298)
T ss_pred EEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHH-HHHhHHhheeeEEEE--CCcceEEEEEEEecCCC-cEEE
Confidence 3455544455677777777644211111111123333332 211223345566666 99999999888775541 1123
Q ss_pred EEeeEEeccchhccChHHHHH
Q psy631 85 YLEDICVTEAYRKKGFGAALF 105 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll 105 (110)
..-.-++||+++..-.|+-||
T Consensus 232 D~iNgG~Dpe~~~~spGSIL~ 252 (298)
T PRK15312 232 DVPNGAVKNECMPLSPGSILM 252 (298)
T ss_pred ecccCccCcccccCCCccEEE
Confidence 333557899999888887653
No 120
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.38 E-value=2.5 Score=25.22 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=26.9
Q ss_pred eeEEEE-EeCCCCcEEEEEEEEeeeccc-----------------CCeeEEEeeEEecc
Q psy631 53 FLSTVA-EDTKTNKLVGYTLFYYLYDCF-----------------EGKYLYLEDICVTE 93 (110)
Q Consensus 53 ~~~~~~-~~~~~~~ivG~~~~~~~~~~~-----------------~~~~~~i~~~~v~p 93 (110)
..+.++ .. +|+|+|++.+-+...+. ....++...++|++
T Consensus 52 t~Yll~~~~--~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~ 108 (209)
T COG3916 52 TVYLLALTS--DGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDK 108 (209)
T ss_pred ceEEEEEcC--CCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeecc
Confidence 445555 55 89999999998653321 12458888898886
No 121
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=89.96 E-value=0.99 Score=27.92 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=51.3
Q ss_pred eeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeE
Q psy631 5 VIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYL 84 (110)
Q Consensus 5 ~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~ 84 (110)
.++++..=..+++++++.++..-.-. ......+.+.+. +..-.+.....++.- +|+++++-.+....++. .-..
T Consensus 128 ~v~~v~~~S~~Ela~iY~~Lf~~Rwg--~~~~~~~~l~e~-f~~Lr~~~fG~vL~l--~~~P~Aiqlv~k~es~~-wv~~ 201 (264)
T PF07395_consen 128 SVRPVSEFSPEELADIYIDLFQKRWG--FRCYGKEHLAEF-FSELRHMIFGSVLFL--NGQPCAIQLVYKVESPK-WVYF 201 (264)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHhC--CCCCcHHHHHHH-HHHhHHhheeeEEEE--CCcceEEEEEEEecCCC-eEEE
Confidence 34455444556777777765431111 111112222222 211123345566666 99999999888775541 1112
Q ss_pred EEeeEEeccchhccChHHHHH
Q psy631 85 YLEDICVTEAYRKKGFGAALF 105 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll 105 (110)
..-.-++||+++.--.|+.||
T Consensus 202 D~iNgG~Dp~~~~~SpGSiL~ 222 (264)
T PF07395_consen 202 DYINGGYDPECRDFSPGSILM 222 (264)
T ss_pred ecccCccCcccccCCCccEEE
Confidence 333457899999988887654
No 122
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=86.16 E-value=3.4 Score=21.61 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++..-|.+.+.... +..+++..+.|.+.-++.|++..+++.+.
T Consensus 17 de~y~~~AIvt~~~----~~v~~LdkFav~~~~~~~gv~D~vf~~i~ 59 (98)
T cd03173 17 DEPLEGVAIVTYEG----NSIPYLDKFAVSDHLWLNNVTDNIFNLIR 59 (98)
T ss_pred cCCccEEEEEecCC----CCCEEEEEEEEcccccccCHHHHHHHHHH
Confidence 33344555554332 23589999999999999999999998875
No 123
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=84.53 E-value=2.1 Score=27.38 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=39.4
Q ss_pred eecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhc--C--CCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 6 IRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGF--D--GERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 6 i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
+|++...|.+.+.+++.++..-. ......+.+.+..... . ...+-...+|.+. ++|+|-+|..+...+
T Consensus 261 lR~~e~kD~~~v~~L~~~y~~Rf--el~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~-p~gkItdFfsFyslp 332 (451)
T COG5092 261 LRLAEEKDMEDVARLYLEYSRRF--ELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEE-PNGKITDFFSFYSLP 332 (451)
T ss_pred cchhhhhCHHHHHHHHHHHHHHH--HHHHHHhHHHHHhhcccccccccCceEEEEEEeC-CCCccccceEEEecc
Confidence 57888999999999998864411 1111222333333311 0 1223344456554 589999988887654
No 124
>PRK04531 acetylglutamate kinase; Provisional
Probab=81.64 E-value=7.9 Score=25.67 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
++..-|.+.+... +...++..+.|.+..||.|++..+++.+.
T Consensus 295 ~~~y~~~Aiv~~~-----~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~ 336 (398)
T PRK04531 295 SENYRAAAILTET-----GGGPYLDKFAVLDDARGEGLGRAVWNVMR 336 (398)
T ss_pred eCCCcEEEEEecC-----CCceEeEEEEEccchhhcChHHHHHHHHH
Confidence 4444455555433 23589999999999999999999998875
No 125
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=76.12 E-value=14 Score=22.06 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred hhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeE-Eeccch
Q psy631 38 ADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDI-CVTEAY 95 (110)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~-~v~p~~ 95 (110)
+..|.........+...+++..+ +|++.||+.+.........+...|..+ +.+|+.
T Consensus 10 ~~~w~~~~~~~~~~~~~~~~~~~--~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A 66 (218)
T PF13530_consen 10 EAWWRRLLREREKDRGYAVYYDE--DGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEA 66 (218)
T ss_dssp HHHHHHHCHTTCCGSEEEEEEEC--TSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHH
T ss_pred HHHHHHHhhcccCCceEEEEECC--CCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHH
Confidence 44454442112334455566666 999999999998863323345777664 556654
No 126
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=75.86 E-value=11 Score=20.91 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=28.3
Q ss_pred CCceeEEEEEeCCCCcEEEEEEEEeeecccCCeeEEEeeEEeccchhc
Q psy631 50 RPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRK 97 (110)
Q Consensus 50 ~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg 97 (110)
.++..++-+.+ .+.++|+..+....+. ....+.+ -+|++||
T Consensus 35 K~~~~Y~gVye--g~~l~Gi~~v~~i~~~----~vecHa~-y~P~fRG 75 (151)
T PF11039_consen 35 KPDQLYLGVYE--GGQLGGIVYVEEIQPS----VVECHAM-YDPGFRG 75 (151)
T ss_pred cCccEEEEEEe--ceEEEEEEEEEEEeee----eEEEEee-eccccch
Confidence 34456677777 8899999888766543 3444444 4899998
No 127
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=75.80 E-value=1.2 Score=21.22 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=10.5
Q ss_pred ccchhccChHHHH
Q psy631 92 TEAYRKKGFGAAL 104 (110)
Q Consensus 92 ~p~~rg~Gig~~l 104 (110)
+|+||++.+++.|
T Consensus 53 hPqYrn~~iA~LL 65 (67)
T PF03376_consen 53 HPQYRNQQIAALL 65 (67)
T ss_pred CchhcCHHHHHHh
Confidence 7888988888765
No 128
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=74.80 E-value=3.5 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=19.4
Q ss_pred eEEEeeEEeccchhccChHHHH
Q psy631 83 YLYLEDICVTEAYRKKGFGAAL 104 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~l 104 (110)
.+++.-..|.|+.+|.||+..+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~ 106 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM 106 (196)
T ss_pred EEEEEEEEeeccccccccchhh
Confidence 4788888999999999999876
No 129
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=69.65 E-value=18 Score=20.39 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=24.8
Q ss_pred CCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeee
Q psy631 31 PDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
+.--.+....+....+ ..-....+.+..+ ++|+++|||.+....
T Consensus 31 ~~~r~~pV~e~~~~iL-Palk~~Qf~ly~d-e~g~Piaf~~WA~vd 74 (148)
T COG2994 31 PDHRHYPVAEISRNIL-PALKLGQFALYFD-EHGRPIAFCTWAFVD 74 (148)
T ss_pred ccchhccHHHHHHHHh-HHHhcCceEEEEc-CCCCeeEEEEEeecC
Confidence 3434455555555534 3233333334442 389999999998653
No 130
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=67.38 E-value=5.5 Score=25.78 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=12.4
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccCh
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGF 100 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gi 100 (110)
.|++||=..+..+.... -.+..-.+-.+|||||+
T Consensus 323 hGQ~vgrLvyE~m~~~P----~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 323 HGQIVGRLVYERMAERP----ERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp TT-EEEEEEEEEBSS--------TTSS-----------
T ss_pred CCcEEEEEEehhhccCc----cccccccccccchhhhh
Confidence 79999988887764431 23333447789999986
No 131
>PRK00756 acyltransferase NodA; Provisional
Probab=66.53 E-value=7 Score=22.68 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=19.2
Q ss_pred eEEEeeEEeccchhccChHHHH
Q psy631 83 YLYLEDICVTEAYRKKGFGAAL 104 (110)
Q Consensus 83 ~~~i~~~~v~p~~rg~Gig~~l 104 (110)
.+++....|.|+..|.||+..+
T Consensus 85 VaElGLygVRpDLEGlGi~~S~ 106 (196)
T PRK00756 85 VAELGLYGVRPDLEGLGIAHSI 106 (196)
T ss_pred EEEeeeeeeccccccccchhhH
Confidence 4788888899999999999876
No 132
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=64.34 E-value=24 Score=20.01 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=36.1
Q ss_pred eeeecCCccCHHHHHHHHHHHHh-----hccCCCC-----CccchhHHhhhhcCCCCCceeEEEEE-eCCCCcEEEEEEE
Q psy631 4 IVIRPAQKLDCGQIRALIQELAD-----YQQMPDG-----PKIGADVLERDGFDGERPLFLSTVAE-DTKTNKLVGYTLF 72 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivG~~~~ 72 (110)
|.+|+..+.|++.+..+-..... |...+.. ...+...+ +. + .+. ...|++. + ++.+.||+..
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Al-rf-y-~Rs--gHSFvA~~e--~~~~~GfvLA 73 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAAL-RF-Y-ERS--GHSFVAEDE--GGELQGFVLA 73 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHH-HH-H-HCC--S--EEEE-E--TTEEEEEEEE
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHh-hh-h-hcc--CCcEEEEcc--CCceeeeeeh
Confidence 47899999999999876332211 1111111 11112222 11 2 222 3568888 6 8999999977
Q ss_pred EeeecccCC--eeEEEeeEEeccc
Q psy631 73 YYLYDCFEG--KYLYLEDICVTEA 94 (110)
Q Consensus 73 ~~~~~~~~~--~~~~i~~~~v~p~ 94 (110)
-.. |.+ ....+..+.+.|.
T Consensus 74 QaV---WQGdrptVlV~ri~~~~~ 94 (161)
T PF09390_consen 74 QAV---WQGDRPTVLVRRILLAPG 94 (161)
T ss_dssp EEE---E-SSSEEEEEEEE---EE
T ss_pred hHH---hcCCCceEEEEEeecCCC
Confidence 654 443 3577777766665
No 133
>PRK14852 hypothetical protein; Provisional
Probab=64.30 E-value=61 Score=24.63 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=53.3
Q ss_pred eeecC-CccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEeeeccc----
Q psy631 5 VIRPA-QKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYLYDCF---- 79 (110)
Q Consensus 5 ~i~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~---- 79 (110)
.||.+ +.+|.+....|............+ ..+...+.. + ...+....|++.. .+.++|...+.......
T Consensus 30 ~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~-~ps~~~~~~--~-~~lp~t~~~i~k~--~~~~l~T~t~~~ds~~~Gl~~ 103 (989)
T PRK14852 30 AIKIAETPDEYTRAFRLVYEEYIRSGYLKP-HPSRMYYNV--W-SILPATSVFIFKS--YHDVLCTLTHIPDSGLFGLPM 103 (989)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHcCCCCc-CcccccCCc--c-ccCCcceEEEecc--CCcEEEEEEEecCCcccCcCH
Confidence 34444 355666666665554222221111 111111222 2 3456677788876 67888888777653310
Q ss_pred -------------CC-eeEEEeeEEeccchhccChHHHHHHH
Q psy631 80 -------------EG-KYLYLEDICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 80 -------------~~-~~~~i~~~~v~p~~rg~Gig~~ll~~ 107 (110)
.+ +.+.+..+.++|+.|.+-+=-.+++.
T Consensus 104 D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~ 145 (989)
T PRK14852 104 DTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKA 145 (989)
T ss_pred HHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHH
Confidence 12 45999999999988876544444443
No 134
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=63.79 E-value=12 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=15.3
Q ss_pred eEEEEEeCCCCcEEEEEEEEeee
Q psy631 54 LSTVAEDTKTNKLVGYTLFYYLY 76 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~ 76 (110)
.++++.. ||+++|+.......
T Consensus 164 ~viVv~~--ng~~vGVg~a~~~~ 184 (202)
T COG5270 164 EVIVVSE--NGRVVGVGIAKKSY 184 (202)
T ss_pred eEEEEec--CCEEEEEEEEecCH
Confidence 4556666 89999988877654
No 135
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=60.91 E-value=6.6 Score=21.62 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.2
Q ss_pred EEeccchhccChHHHHHHHH
Q psy631 89 ICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 89 ~~v~p~~rg~Gig~~ll~~~ 108 (110)
+.+||+++|.-|.+.|.+++
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l 79 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYL 79 (127)
T ss_pred EEeCCCcchHHHHHHHHHHh
Confidence 46899999999999998875
No 136
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=60.31 E-value=5.5 Score=26.99 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=34.5
Q ss_pred CceeEEEEEeCC-CCcEEEEEEEEeeecc-cC----Cee------------EEEeeEEeccchhccChHHHHHHHHh
Q psy631 51 PLFLSTVAEDTK-TNKLVGYTLFYYLYDC-FE----GKY------------LYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 51 ~~~~~~~~~~~~-~~~ivG~~~~~~~~~~-~~----~~~------------~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
.....|+...++ ++-++|+..+...... .. ++. .-++. . ...||-+|+|+.||+.+.
T Consensus 402 gg~e~Fls~ed~~~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~-~-~~~~QH~G~G~~L~~~AE 476 (515)
T COG1243 402 GGTEIFLSYEDPKNDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGK-R-EDEWQHRGYGRELLEEAE 476 (515)
T ss_pred CCEEEEeecccchhhhhhheeeecccccchhhhhcccchhhhhhhhcccccccccc-C-cchhhcccHHHHHHHHHH
Confidence 344555554422 3678999998865431 11 111 22222 2 578999999999999875
No 137
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=57.79 E-value=8.3 Score=19.26 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.4
Q ss_pred EEeccchhccChHHHHHHHH
Q psy631 89 ICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 89 ~~v~p~~rg~Gig~~ll~~~ 108 (110)
+.+||+..|+.+.+++.+.+
T Consensus 50 iltD~D~aG~~i~~~~~~~l 69 (81)
T cd01027 50 ILTDPDRKGEKIRKKLSEYL 69 (81)
T ss_pred EEECCCHHHHHHHHHHHHHh
Confidence 57899999999999998876
No 138
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=56.32 E-value=52 Score=21.20 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=41.0
Q ss_pred eEEEEEeCCCCcEEEEEEEEeeecccC--CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 54 LSTVAEDTKTNKLVGYTLFYYLYDCFE--GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~--~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..++.+ .+.+|+.+.+.+...... .-...|..+.|+.-|..-|+=..|+++++
T Consensus 171 T~IIvY---RetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~ 225 (304)
T PF11124_consen 171 THIIVY---RETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAM 225 (304)
T ss_pred ceEEEE---cCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHH
Confidence 345555 478899998887754322 23488999999999999999999999874
No 139
>PRK01346 hypothetical protein; Provisional
Probab=54.78 E-value=60 Score=21.45 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCC---CC--ceeEEEEEeCCCCcEEEEEEEEeeecccC---CeeEEE
Q psy631 15 GQIRALIQELADYQQMPDGPKIGADVLERDGFDGE---RP--LFLSTVAEDTKTNKLVGYTLFYYLYDCFE---GKYLYL 86 (110)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~ivG~~~~~~~~~~~~---~~~~~i 86 (110)
+.+.++++.. ....+.....++..|.....+.. .. ...+.+..+ +|++.||+.+........ .....|
T Consensus 169 ~~l~~~y~~~--~~~~~G~~~R~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~Gy~~y~~~~~~~~~~~~~~l~V 244 (411)
T PRK01346 169 DLLPAVYERW--RRARPGALSRPPAWWDDVLADRESRRGGGSPLRALVHPD--DGEVDGYALYRVDDTWGFRGPDGTVEV 244 (411)
T ss_pred HHHHHHHHHh--hccCCCcccCChHHHHHHhcCcccccCCCCccEEEEEcC--CCcccEEEEEEEcCcccccCCCceEEE
Confidence 4455555443 22223344445666654422111 11 123334455 899999999887532111 234666
Q ss_pred eeEEe-ccch
Q psy631 87 EDICV-TEAY 95 (110)
Q Consensus 87 ~~~~v-~p~~ 95 (110)
..+.. +|+.
T Consensus 245 ~e~~~~~~~a 254 (411)
T PRK01346 245 EELVAATPAA 254 (411)
T ss_pred EEEEeCCHHH
Confidence 55544 3443
No 140
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.23 E-value=64 Score=21.30 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=21.2
Q ss_pred CCceeEEEEEeCCCCcEEEEEEEEeeecccCCe
Q psy631 50 RPLFLSTVAEDTKTNKLVGYTLFYYLYDCFEGK 82 (110)
Q Consensus 50 ~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~ 82 (110)
......++|.. +|+.||.+......+...++
T Consensus 263 ~~~vllv~A~r--~g~~iaga~~lig~d~LYGR 293 (387)
T COG3146 263 ADDVLLVMAKR--GGRPIAGAFNLIGGDTLYGR 293 (387)
T ss_pred hhhEEEEEecc--CCccceEEEEeecCceeccc
Confidence 34466777888 99999877777665554343
No 141
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=50.69 E-value=37 Score=17.83 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=25.1
Q ss_pred eeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 82 KYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 82 ~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
...++..+.|..+-++.|++..+++.+.
T Consensus 32 ~vp~LdkF~vs~~~~l~~vaD~Vf~~i~ 59 (98)
T cd04263 32 EVATLATFTITKSGWLNNVADNIFTAIK 59 (98)
T ss_pred CCEEEEEEEEccccccccHHHHHHHHHH
Confidence 4589999999999999999999998875
No 142
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=49.07 E-value=46 Score=18.49 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=22.3
Q ss_pred ccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEee
Q psy631 35 KIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYYL 75 (110)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~ 75 (110)
.++...+....+ .......+.++.+ +|.++||+.+...
T Consensus 18 ~~~l~~l~~~~l-pai~~~Q~~l~~~--~g~Pvaf~~WA~l 55 (133)
T PF02794_consen 18 DWPLSDLEQLLL-PAIKLGQYRLYSE--DGRPVAFCSWAFL 55 (133)
T ss_pred cCcHHHHHHHHH-HHHhhCcEEEEEe--CCeEEEEEEhhcC
Confidence 344555555433 2223334445556 9999999999843
No 143
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=44.20 E-value=24 Score=15.48 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=12.6
Q ss_pred eeEEEEEeCCCCcEEEEEEE
Q psy631 53 FLSTVAEDTKTNKLVGYTLF 72 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~ 72 (110)
....+..+ +++++|.+..
T Consensus 31 ~~~~V~d~--~~~~~G~is~ 48 (57)
T PF00571_consen 31 SRLPVVDE--DGKLVGIISR 48 (57)
T ss_dssp SEEEEEST--TSBEEEEEEH
T ss_pred cEEEEEec--CCEEEEEEEH
Confidence 44556556 8999998854
No 144
>KOG2535|consensus
Probab=42.30 E-value=14 Score=24.26 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=14.7
Q ss_pred cchhccChHHHHHHHHh
Q psy631 93 EAYRKKGFGAALFESVV 109 (110)
Q Consensus 93 p~~rg~Gig~~ll~~~~ 109 (110)
..||-||+|..||+.+.
T Consensus 497 ~KfQHQG~GtLLmeEAE 513 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAE 513 (554)
T ss_pred hhhhhcchhhHHHHHHH
Confidence 46999999999998864
No 145
>PHA02324 hypothetical protein
Probab=41.63 E-value=12 Score=16.26 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=5.6
Q ss_pred eccchhccC
Q psy631 91 VTEAYRKKG 99 (110)
Q Consensus 91 v~p~~rg~G 99 (110)
-...|||||
T Consensus 38 akK~YRGQG 46 (47)
T PHA02324 38 AKKPYRGQG 46 (47)
T ss_pred ccCcccCCC
Confidence 345677776
No 146
>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins.; PDB: 2I5H_A.
Probab=39.68 E-value=16 Score=21.52 Aligned_cols=11 Identities=18% Similarity=0.438 Sum_probs=7.0
Q ss_pred ChHHHHHHHHh
Q psy631 99 GFGAALFESVV 109 (110)
Q Consensus 99 Gig~~ll~~~~ 109 (110)
|||+++|..++
T Consensus 123 GIGKK~m~~IL 133 (181)
T PF04919_consen 123 GIGKKTMWKIL 133 (181)
T ss_dssp T--HHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 88888887765
No 147
>PF08110 Antimicrobial15: Ocellatin family; InterPro: IPR012518 This family consists of the ocellatin family of antimicrobial peptides. Ocellatins are produced from the electrical-stimulated skin secretions of the South American frog, Leptodactylus ocellatus (Argus frog). The family consists of three structurally related peptides, ocellatin 1, ocellatin 2 and ocellatin 3. These peptides present haemolytic activity against human erythrocytes and are also active against Escherichia coli [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=39.11 E-value=24 Score=12.32 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.1
Q ss_pred cChHHHHHHHHh
Q psy631 98 KGFGAALFESVV 109 (110)
Q Consensus 98 ~Gig~~ll~~~~ 109 (110)
+|-|+.|+.++.
T Consensus 6 K~AaK~l~~H~a 17 (19)
T PF08110_consen 6 KGAAKDLLAHAA 17 (19)
T ss_pred HhHHHHHHHHHh
Confidence 567777777654
No 148
>PHA01733 hypothetical protein
Probab=39.00 E-value=34 Score=19.61 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=30.8
Q ss_pred ceeeecCCccCHHHHHH-HHHH-HHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEeCCCCcEEEEEEEEe
Q psy631 3 DIVIRPAQKLDCGQIRA-LIQE-LADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAEDTKTNKLVGYTLFYY 74 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~ 74 (110)
+=.|++++.+|+..+.. +..+ ..+++.... +.. .....+ ..+.... +.... +|+++|.+....
T Consensus 2 ~~~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~----~p~-~l~~~~-~~s~~~v-~~~~~--nG~l~aI~Gv~~ 66 (153)
T PHA01733 2 SDNNRPATQADATEVAQNLRQEDREEIEGLGH----SPL-ALHLSL-DVSENVV-AFVAP--DGSLAGVAGLVE 66 (153)
T ss_pred CCccccccHHHHHHHHccCCHHHHHHHHHhCC----Ccc-cchhhh-hccccce-EEEec--CCcEEEEecccc
Confidence 33578899988866655 3322 111211111 111 112212 1222222 44444 899999888876
No 149
>PRK04017 hypothetical protein; Provisional
Probab=38.25 E-value=27 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.5
Q ss_pred EEeccchhccChHHHHHHHH
Q psy631 89 ICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 89 ~~v~p~~rg~Gig~~ll~~~ 108 (110)
+.+||++.|.-+.+.+.+.+
T Consensus 70 ILTD~D~~GekIr~~l~~~l 89 (132)
T PRK04017 70 ILTDFDRKGEELAKKLSEYL 89 (132)
T ss_pred EEECCCcchHHHHHHHHHHH
Confidence 57999999999999988765
No 150
>PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S55 (SpoIVB peptidase family, clan PA(S)). The protein SpoIVB plays a key role in signalling in the final sigma-K checkpoint of Bacillus subtilis [, ].
Probab=37.22 E-value=47 Score=20.27 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=6.8
Q ss_pred EeeEEeccchhccC
Q psy631 86 LEDICVTEAYRKKG 99 (110)
Q Consensus 86 i~~~~v~p~~rg~G 99 (110)
+..+++...-+|-|
T Consensus 196 Vthvf~~dp~~Gyg 209 (218)
T PF05580_consen 196 VTHVFVNDPTKGYG 209 (218)
T ss_pred EEEEEecCCCceee
Confidence 33344555555555
No 151
>KOG1489|consensus
Probab=36.80 E-value=23 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=17.3
Q ss_pred eccchhccChHHHHHHHHhC
Q psy631 91 VTEAYRKKGFGAALFESVVK 110 (110)
Q Consensus 91 v~p~~rg~Gig~~ll~~~~~ 110 (110)
|.-.++++|+|...++++.+
T Consensus 255 I~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 255 IEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccccccCcccHHHHHHHHh
Confidence 56789999999999999863
No 152
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=36.41 E-value=1.1e+02 Score=19.24 Aligned_cols=94 Identities=11% Similarity=-0.031 Sum_probs=44.2
Q ss_pred eeecC---CccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcC-CCCCceeEEEEEeCCCCcEEEEEEEEeeecccC
Q psy631 5 VIRPA---QKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFD-GERPLFLSTVAEDTKTNKLVGYTLFYYLYDCFE 80 (110)
Q Consensus 5 ~i~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~ 80 (110)
++.+. ++++.+++.++..+..... . ..+..+....++ ........+++.. ++|+++|++.+.+....
T Consensus 134 ~~~~~~~~~~~~~~el~~i~~~W~~~~---~---~~e~~~~~~~~~~~~~~~~~~~~~~~-~dgki~af~~~~~~~~~-- 204 (299)
T PF09924_consen 134 EVVPIPELDPELRDELLEISDEWLKEK---E---RPERGFIMGALEHFDELGLRGFVARV-ADGKIVAFAIGSPLGGR-- 204 (299)
T ss_dssp EEEE-----GGGHHHHHHHHHHHHHHC---T---HHHHHHHHHHHHTHHHHT-EEEEEEE--TTEEEEEEEEEEEE-T--
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHhcC---c---hhHHHHHhccccchhhcCceEEEEEE-CCCcEEEEEEEEEccCC--
Confidence 44454 5677777777755543321 0 111111111110 0112355566654 38999999999987621
Q ss_pred CeeEEEeeEEeccchhccChHHHHHHHHh
Q psy631 81 GKYLYLEDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 81 ~~~~~i~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
..+.++-.--+|+ --+|+-..|+..++
T Consensus 205 -~~~~~~~~k~~~~-a~~G~~e~l~~~~~ 231 (299)
T PF09924_consen 205 -DGWSIDFEKADPD-APKGIYEFLNVEFA 231 (299)
T ss_dssp -TEEEEEEEEE-TT--STTHHHHHHHHHH
T ss_pred -ccEEEEEEecCCC-CCCcHHHHHHHHHH
Confidence 1233332333444 34566666665543
No 153
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=35.38 E-value=10 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.8
Q ss_pred EEeeEEeccchhccChHHHHHH
Q psy631 85 YLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 85 ~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
.|..+.++|+|||--+++.+-+
T Consensus 190 DVeaLVlDPsyrgT~ve~~~~~ 211 (297)
T PF12294_consen 190 DVEALVLDPSYRGTEVEAAARA 211 (297)
T ss_pred hhHHHhcCccccCChHHHHHHH
Confidence 4566889999999999987643
No 154
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=34.28 E-value=54 Score=19.47 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.0
Q ss_pred EeeEEeccchhccChHHHH
Q psy631 86 LEDICVTEAYRKKGFGAAL 104 (110)
Q Consensus 86 i~~~~v~p~~rg~Gig~~l 104 (110)
.+-+|+||.|. +|+....
T Consensus 115 FDlVflDPPy~-~~l~~~~ 132 (187)
T COG0742 115 FDLVFLDPPYA-KGLLDKE 132 (187)
T ss_pred ccEEEeCCCCc-cchhhHH
Confidence 56789999999 8887433
No 155
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=33.76 E-value=40 Score=13.34 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=10.7
Q ss_pred eEEEEEeCCCCcEEEEEEE
Q psy631 54 LSTVAEDTKTNKLVGYTLF 72 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~ 72 (110)
.+++..+ +++++|++..
T Consensus 25 ~~~v~~~--~~~~~g~i~~ 41 (49)
T smart00116 25 RLPVVDE--EGRLVGIVTR 41 (49)
T ss_pred cccEECC--CCeEEEEEEH
Confidence 4445554 6788888753
No 156
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=31.92 E-value=91 Score=16.88 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=11.1
Q ss_pred CCcEEEEEEEEeee
Q psy631 63 TNKLVGYTLFYYLY 76 (110)
Q Consensus 63 ~~~ivG~~~~~~~~ 76 (110)
+|+++|+.++..+-
T Consensus 93 ~g~~iG~LCIN~D~ 106 (118)
T PF08348_consen 93 NGKLIGALCINFDI 106 (118)
T ss_pred CCCEEEEEEEEecc
Confidence 68999999887653
No 157
>PF05865 Cypo_polyhedrin: Cypovirus polyhedrin protein; InterPro: IPR008464 This family consists of several Cypovirus polyhedrin proteins. Polyhedrin is known to form a crystalline matrix (polyhedra) in infected insect cells [].; PDB: 2OH7_A 2OH5_A 2OH6_A.
Probab=31.82 E-value=1.1e+02 Score=17.80 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCcEEEEEEEEeeecccCCeeEEEeeEEeccchhccChHHHHHH
Q psy631 63 TNKLVGYTLFYYLYDCFEGKYLYLEDICVTEAYRKKGFGAALFE 106 (110)
Q Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~i~~~~v~p~~rg~Gig~~ll~ 106 (110)
+|+|||+-..+..+.....-..-+..+.-.|+--+-|-+..+|+
T Consensus 156 dgeivgyshyfelpheynsisl~vsgvhknpssynv~~~hnimd 199 (248)
T PF05865_consen 156 DGEIVGYSHYFELPHEYNSISLSVSGVHKNPSSYNVGSPHNIMD 199 (248)
T ss_dssp TTEEEEEEEEEE--STT---EEEEEEEB---SS--TTSTTTHHH
T ss_pred cceEeeeeeeeecccccceeEEEeeeeccCCccccccCchhHHH
Confidence 89999999887654332222355555555666666666665554
No 158
>COG3668 ParE Plasmid stabilization system protein [General function prediction only]
Probab=31.67 E-value=22 Score=18.19 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=16.7
Q ss_pred CcceeeecCCccCHHHHHHHHH
Q psy631 1 MGDIVIRPAQKLDCGQIRALIQ 22 (110)
Q Consensus 1 mm~~~i~~~~~~d~~~~~~~~~ 22 (110)
||.+.+.+...+|++.+.....
T Consensus 1 M~~~~~s~~A~~dl~~I~~~~~ 22 (98)
T COG3668 1 MMKVILSPAAEADLEDIADYIA 22 (98)
T ss_pred CCceEccHHHHHHHHHHHHHHH
Confidence 7777777777888888877655
No 159
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=31.59 E-value=39 Score=18.26 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.1
Q ss_pred EEEeeEEeccchhccChHHHH
Q psy631 84 LYLEDICVTEAYRKKGFGAAL 104 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~Gig~~l 104 (110)
-+...+.++|++..||--..|
T Consensus 63 ~~~~~i~IDP~~~~KGC~~TL 83 (141)
T PHA02456 63 QFVGWIEIDPDYANKGCRDTL 83 (141)
T ss_pred cceeEEEECCcccccchHHHH
Confidence 466677899999999965544
No 160
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=29.76 E-value=24 Score=13.12 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=7.5
Q ss_pred ecCCccCHHHHHHH
Q psy631 7 RPAQKLDCGQIRAL 20 (110)
Q Consensus 7 ~~~~~~d~~~~~~~ 20 (110)
-++.++|+.++.++
T Consensus 8 mPMSPddy~~l~~~ 21 (23)
T PF12162_consen 8 MPMSPDDYDELERM 21 (23)
T ss_dssp --S-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 46677777777553
No 161
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=29.13 E-value=87 Score=16.51 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=10.2
Q ss_pred CCCcEEEEEEEEee
Q psy631 62 KTNKLVGYTLFYYL 75 (110)
Q Consensus 62 ~~~~ivG~~~~~~~ 75 (110)
.+|+++|++.+...
T Consensus 99 ~~g~viG~V~VG~~ 112 (116)
T PF14827_consen 99 SDGKVIGVVSVGVS 112 (116)
T ss_dssp TTS-EEEEEEEEEE
T ss_pred CCCcEEEEEEEEEE
Confidence 48999999987654
No 162
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=28.97 E-value=17 Score=12.25 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=3.4
Q ss_pred Eeccch
Q psy631 90 CVTEAY 95 (110)
Q Consensus 90 ~v~p~~ 95 (110)
|+.|+|
T Consensus 2 Y~SPdy 7 (17)
T PF07981_consen 2 YFSPDY 7 (17)
T ss_pred ccCCCc
Confidence 556655
No 163
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=28.54 E-value=35 Score=22.48 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=16.7
Q ss_pred eccchhccChHHHHHHHHhC
Q psy631 91 VTEAYRKKGFGAALFESVVK 110 (110)
Q Consensus 91 v~p~~rg~Gig~~ll~~~~~ 110 (110)
+.-..+|.|+|...++|+.+
T Consensus 218 IEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCccHHHHHHHHh
Confidence 45578999999999999863
No 164
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=28.28 E-value=42 Score=12.42 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=6.9
Q ss_pred cChHHHHHHHHh
Q psy631 98 KGFGAALFESVV 109 (110)
Q Consensus 98 ~Gig~~ll~~~~ 109 (110)
.|+|.+..+.++
T Consensus 7 ~GiG~k~A~~il 18 (26)
T smart00278 7 PGIGPKTAEKIL 18 (26)
T ss_pred CCCCHHHHHHHH
Confidence 466666655543
No 165
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=26.81 E-value=66 Score=21.10 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.9
Q ss_pred eeEEeccchhccChHHHHHHHHh
Q psy631 87 EDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 87 ~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+-+++||.+ .|+...+++.+.
T Consensus 290 D~v~lDPPR--~G~~~~~l~~l~ 310 (362)
T PRK05031 290 STIFVDPPR--AGLDDETLKLVQ 310 (362)
T ss_pred CEEEECCCC--CCCcHHHHHHHH
Confidence 568999994 689999888764
No 166
>KOG3344|consensus
Probab=26.48 E-value=18 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=10.2
Q ss_pred EEeccchhccChHH
Q psy631 89 ICVTEAYRKKGFGA 102 (110)
Q Consensus 89 ~~v~p~~rg~Gig~ 102 (110)
.+..++|||+|.|+
T Consensus 135 s~~~~~frg~g~g~ 148 (150)
T KOG3344|consen 135 SGTEPQFRGRGFGR 148 (150)
T ss_pred ccccccccccCCCC
Confidence 34678888888764
No 167
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.39 E-value=2.1e+02 Score=19.26 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=31.5
Q ss_pred ceeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEEe
Q psy631 3 DIVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAED 60 (110)
Q Consensus 3 ~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (110)
.+++|..+.+|++.+.++..+...-..... .+.+.+... ++.-.+...+++|+-
T Consensus 185 GV~vr~~~~e~l~~F~~l~~~T~~R~~f~~---r~~~Yf~~l-~~~f~d~a~~~~A~l 238 (406)
T PF02388_consen 185 GVEVREGSREELDDFYDLYKETAERKGFSI---RSLEYFENL-YDAFGDKAKFFLAEL 238 (406)
T ss_dssp TEEEEEE-CHHHHHHHHHHHHHHHHTT--------HHHHHHH-HHHCCCCEEEEEEEE
T ss_pred ceEEEEcCHHHHHHHHHHHHHHHhhCCCcc---cCHHHHHHH-HHhcCCCeEEEEEEE
Confidence 478888988999999999988755433222 234444443 212233366777776
No 168
>PHA00432 internal virion protein A
Probab=25.96 E-value=1.3e+02 Score=16.93 Aligned_cols=16 Identities=0% Similarity=-0.228 Sum_probs=12.1
Q ss_pred eeEEEEEeCCCCcEEEEE
Q psy631 53 FLSTVAEDTKTNKLVGYT 70 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~ 70 (110)
..++.... +|++++.+
T Consensus 37 ~~~~~~~~--~G~~~aI~ 52 (137)
T PHA00432 37 SECVTLSL--DGFVLAIG 52 (137)
T ss_pred ceEEEEec--CCeEEEEe
Confidence 44677777 89998877
No 169
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=25.40 E-value=66 Score=16.07 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=17.4
Q ss_pred eeeecCCccCHHHHHHHHHHHHhh
Q psy631 4 IVIRPAQKLDCGQIRALIQELADY 27 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~ 27 (110)
..+|.++++|..+|...-++...|
T Consensus 35 ~~~R~Lt~~E~~eL~~y~~~v~~y 58 (76)
T PF06394_consen 35 KYARDLTPDEQQELKTYQKKVAAY 58 (76)
T ss_dssp CEEEE--HHHHHHHHHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999887776555
No 170
>PF08104 Antimicrobial_9: Ponericin L family; InterPro: IPR012528 This family consists of the ponericin L family of antimicrobial peptides that are isolated from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). Ponericin L family shares similarities with dermaseptins. Ponericin L may adopt an amphipathic alpha-helical structure in polar environments and these peptides exhibit a defensive role against microbial pathogens arising from prey introduction and/or ingestion [].; GO: 0045087 innate immune response, 0005576 extracellular region
Probab=25.34 E-value=51 Score=11.90 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=6.5
Q ss_pred cChHHHHHHHH
Q psy631 98 KGFGAALFESV 108 (110)
Q Consensus 98 ~Gig~~ll~~~ 108 (110)
+|-|+.++..+
T Consensus 10 kgagkavlgki 20 (24)
T PF08104_consen 10 KGAGKAVLGKI 20 (24)
T ss_pred ccchHHHHHHh
Confidence 46666666544
No 171
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=25.26 E-value=1.6e+02 Score=17.54 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=39.7
Q ss_pred eeeecCCccCHHHHHHHHHHHHhhccCCCCCccchhHHhhhhcCCCCCceeEEEEE-eCCCCcEEEEEEEEee
Q psy631 4 IVIRPAQKLDCGQIRALIQELADYQQMPDGPKIGADVLERDGFDGERPLFLSTVAE-DTKTNKLVGYTLFYYL 75 (110)
Q Consensus 4 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivG~~~~~~~ 75 (110)
+.+....+.|+..+..+++.+.. . ..+....+....+ ..+...+.|-. +.+++.+.|++.+...
T Consensus 7 Fe~~dp~~~D~hgIk~LL~ql~~--~----~~~dl~~LadlIi--~Q~~vGsvVK~~d~~e~dvyg~~Svlnl 71 (194)
T PF13862_consen 7 FEFFDPNEIDFHGIKNLLQQLFL--D----AEIDLSELADLII--EQNNVGSVVKQADGDEDDVYGFLSVLNL 71 (194)
T ss_pred EEeeCCChhhHHHHHHHHHHhcc--c----cCcCHHHHHHHHH--cCCCCceEEEecCCCCCcceEEEEEEEc
Confidence 55677788899999999888833 1 3455566666644 22222233333 2225788898887754
No 172
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=25.07 E-value=78 Score=20.70 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.3
Q ss_pred eeEEeccchhccChHHHHHHHHh
Q psy631 87 EDICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 87 ~~~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+-+++||. +.|++..+++.+.
T Consensus 281 d~v~lDPP--R~G~~~~~l~~l~ 301 (353)
T TIGR02143 281 STIFVDPP--RAGLDPDTCKLVQ 301 (353)
T ss_pred CEEEECCC--CCCCcHHHHHHHH
Confidence 56899999 4799999988764
No 173
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=24.66 E-value=1.1e+02 Score=18.26 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.5
Q ss_pred EeeEEeccchhccChHHHHHHHH
Q psy631 86 LEDICVTEAYRKKGFGAALFESV 108 (110)
Q Consensus 86 i~~~~v~p~~rg~Gig~~ll~~~ 108 (110)
.+-++++|.|| .|+...+++.+
T Consensus 122 fDlV~~DPPy~-~g~~~~~l~~l 143 (199)
T PRK10909 122 HNVVFVDPPFR-KGLLEETINLL 143 (199)
T ss_pred ceEEEECCCCC-CChHHHHHHHH
Confidence 46789999996 58888887765
No 174
>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase
Probab=24.64 E-value=84 Score=17.98 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=10.6
Q ss_pred EEEeeEEeccchhcc
Q psy631 84 LYLEDICVTEAYRKK 98 (110)
Q Consensus 84 ~~i~~~~v~p~~rg~ 98 (110)
..+..-.++|.|||+
T Consensus 92 l~v~~~~iD~Gy~G~ 106 (158)
T PHA01707 92 LLIPPTIVDAGFEGQ 106 (158)
T ss_pred EEecceeECCCCCCE
Confidence 344444789999986
No 175
>PF11192 DUF2977: Protein of unknown function (DUF2977); InterPro: IPR021358 This entry is represented by Bacteriophage 96, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.50 E-value=97 Score=14.82 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.5
Q ss_pred CCcEEEEEEEEe
Q psy631 63 TNKLVGYTLFYY 74 (110)
Q Consensus 63 ~~~ivG~~~~~~ 74 (110)
.++|+||+.+.-
T Consensus 8 ~n~I~gya~iG~ 19 (62)
T PF11192_consen 8 KNEIIGYATIGG 19 (62)
T ss_pred CCeEEEEEEEcC
Confidence 788889888764
No 176
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=23.39 E-value=1.1e+02 Score=15.18 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=11.7
Q ss_pred eEEEEEeCCCCcEEEEEEEE
Q psy631 54 LSTVAEDTKTNKLVGYTLFY 73 (110)
Q Consensus 54 ~~~~~~~~~~~~ivG~~~~~ 73 (110)
.+++... +|+++|++...
T Consensus 27 ~~~V~d~--~~~~~G~v~~~ 44 (110)
T cd04605 27 HLPVVDE--DGRLVGIVTSW 44 (110)
T ss_pred eEEEECC--CCcEEEEEeHH
Confidence 3445555 68899888643
No 177
>PF02941 FeThRed_A: Ferredoxin thioredoxin reductase variable alpha chain; InterPro: IPR004207 Ferredoxin thioredoxin reductase is a [4FE-4S] protein which plays an important role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit a and subunit b. Subunit a is the variable subunit, and b is the catalytic chain. This family is the alpha chain.; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0015979 photosynthesis, 0009536 plastid; PDB: 2PUK_B 2PVO_B 2PVG_B 1DJ7_B 2PVD_B 2PU9_B 2PUO_B.
Probab=23.31 E-value=27 Score=16.91 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=6.8
Q ss_pred EEeccchhccCh
Q psy631 89 ICVTEAYRKKGF 100 (110)
Q Consensus 89 ~~v~p~~rg~Gi 100 (110)
+|-+|++|++++
T Consensus 13 Vyh~P~hr~~~f 24 (67)
T PF02941_consen 13 VYHHPEHRNPPF 24 (67)
T ss_dssp ES--TTSTTS-E
T ss_pred EEeCCcccCCCc
Confidence 577888888764
No 178
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.10 E-value=95 Score=18.28 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=9.6
Q ss_pred eccchhccChHHHHHHHH
Q psy631 91 VTEAYRKKGFGAALFESV 108 (110)
Q Consensus 91 v~p~~rg~Gig~~ll~~~ 108 (110)
=+..++|+|.|.+.|..+
T Consensus 60 DD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 60 DDKGFIGEGPGEQALEYV 77 (180)
T ss_pred eCCCCCCCCccHHHHHHH
Confidence 344455556665555544
No 179
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=22.78 E-value=72 Score=12.67 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.8
Q ss_pred ChHHHHHHHH
Q psy631 99 GFGAALFESV 108 (110)
Q Consensus 99 Gig~~ll~~~ 108 (110)
|+|+++-+.+
T Consensus 18 GIG~kt~~kL 27 (32)
T PF11798_consen 18 GIGKKTAKKL 27 (32)
T ss_dssp TS-HHHHHHH
T ss_pred CccHHHHHHH
Confidence 5666555443
No 180
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=22.65 E-value=1.1e+02 Score=14.94 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=10.7
Q ss_pred CCCcEEEEEEEEee
Q psy631 62 KTNKLVGYTLFYYL 75 (110)
Q Consensus 62 ~~~~ivG~~~~~~~ 75 (110)
++|+++|+-.+.-.
T Consensus 38 e~GkV~GiEi~~As 51 (69)
T COG5428 38 ENGKVIGIEIWNAS 51 (69)
T ss_pred CCCcEEEEEEEchh
Confidence 48999998877543
No 181
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=22.14 E-value=65 Score=14.77 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=7.5
Q ss_pred CCcEEEEEEE
Q psy631 63 TNKLVGYTLF 72 (110)
Q Consensus 63 ~~~ivG~~~~ 72 (110)
++++||.|..
T Consensus 34 ~~~VVG~Ce~ 43 (52)
T PF06649_consen 34 GGQVVGSCEN 43 (52)
T ss_pred CCeEEEEcCC
Confidence 5788888754
No 182
>PF13045 DUF3905: Protein of unknown function (DUF3905)
Probab=22.11 E-value=33 Score=17.13 Aligned_cols=10 Identities=10% Similarity=0.302 Sum_probs=8.0
Q ss_pred cchhccChHH
Q psy631 93 EAYRKKGFGA 102 (110)
Q Consensus 93 p~~rg~Gig~ 102 (110)
|+|||.|++-
T Consensus 16 P~fk~~g~~~ 25 (84)
T PF13045_consen 16 PSFKGTGRKM 25 (84)
T ss_pred ccccccCccc
Confidence 9999888763
No 183
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.83 E-value=1.3e+02 Score=15.26 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=12.7
Q ss_pred eeEEEEEeCCCCcEEEEEEEE
Q psy631 53 FLSTVAEDTKTNKLVGYTLFY 73 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~ 73 (110)
...++..+ +|+++|++...
T Consensus 25 ~~~~Vvd~--~g~~~G~vt~~ 43 (114)
T cd04619 25 DLVVVCDP--HGKLAGVLTKT 43 (114)
T ss_pred CEEEEECC--CCCEEEEEehH
Confidence 34455555 78899988743
No 184
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=21.81 E-value=50 Score=10.48 Aligned_cols=7 Identities=14% Similarity=0.619 Sum_probs=3.7
Q ss_pred hHHHHHH
Q psy631 100 FGAALFE 106 (110)
Q Consensus 100 ig~~ll~ 106 (110)
+|+.+++
T Consensus 6 lgk~v~d 12 (14)
T PF08251_consen 6 LGKMVID 12 (14)
T ss_pred HHHHHHh
Confidence 4555554
No 185
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=21.81 E-value=1.6e+02 Score=17.19 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=15.9
Q ss_pred eeEEEEEeCCCCcEEEEEEEE
Q psy631 53 FLSTVAEDTKTNKLVGYTLFY 73 (110)
Q Consensus 53 ~~~~~~~~~~~~~ivG~~~~~ 73 (110)
...|.++. ||+-+||+.=.
T Consensus 72 ep~W~myC--NGrK~GyAvRR 90 (166)
T PF04759_consen 72 EPVWTMYC--NGRKVGYAVRR 90 (166)
T ss_pred ceeEEEEE--CCceeeeeEEc
Confidence 45788899 99999999766
No 186
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=21.80 E-value=90 Score=18.95 Aligned_cols=25 Identities=24% Similarity=0.061 Sum_probs=15.0
Q ss_pred CCCceeEEEEEeCCCCcEEEEEEEEee
Q psy631 49 ERPLFLSTVAEDTKTNKLVGYTLFYYL 75 (110)
Q Consensus 49 ~~~~~~~~~~~~~~~~~ivG~~~~~~~ 75 (110)
..+.-.++|... +|+++|...-...
T Consensus 121 ~~~~R~YlV~~~--~~~l~Gi~gr~~~ 145 (208)
T PF07299_consen 121 KGSNRKYLVYER--DGKLVGIAGRFSP 145 (208)
T ss_dssp CCCTEEEEEEE---TS-EEEEEEEE-S
T ss_pred CCCCcEEEEEEE--CCEEEEEEEecCC
Confidence 344556677777 9999998755543
No 187
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.71 E-value=73 Score=14.40 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=11.9
Q ss_pred chhccChHHHHHHHH
Q psy631 94 AYRKKGFGAALFESV 108 (110)
Q Consensus 94 ~~rg~Gig~~ll~~~ 108 (110)
=||+--+|..|.+.+
T Consensus 5 lYR~stlG~aL~dtL 19 (49)
T PF02268_consen 5 LYRRSTLGIALTDTL 19 (49)
T ss_dssp GGGCSHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHH
Confidence 478888999887765
No 188
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=21.56 E-value=65 Score=18.93 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=12.8
Q ss_pred EEeccchhccChHHHHHHH
Q psy631 89 ICVTEAYRKKGFGAALFES 107 (110)
Q Consensus 89 ~~v~p~~rg~Gig~~ll~~ 107 (110)
+++||++-|.-|=+.+.++
T Consensus 52 IfTDpD~~GekIRk~i~~~ 70 (174)
T TIGR00334 52 ILTDPDFPGEKIRKKIEQH 70 (174)
T ss_pred EEeCCCCchHHHHHHHHHH
Confidence 4677777777766666554
No 189
>PRK13559 hypothetical protein; Provisional
Probab=21.28 E-value=60 Score=20.72 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.5
Q ss_pred EeccchhccChHHHHHHHHh
Q psy631 90 CVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 90 ~v~p~~rg~Gig~~ll~~~~ 109 (110)
...++.++.|+|..+++.++
T Consensus 315 ~~~~~~~~~g~Gl~i~~~~v 334 (361)
T PRK13559 315 PTPPKLAKRGFGTVIIGAMV 334 (361)
T ss_pred CCCCCCCCCCcHHHHHHHHH
Confidence 35678899999999998764
No 190
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=21.16 E-value=82 Score=20.84 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=13.9
Q ss_pred ccchhccChHHHHHHHH
Q psy631 92 TEAYRKKGFGAALFESV 108 (110)
Q Consensus 92 ~p~~rg~Gig~~ll~~~ 108 (110)
||+-+|+|+++++++.+
T Consensus 75 D~d~~G~~~~~~~~~~L 91 (360)
T PRK14719 75 DFDRAGRVYAKNIMEEF 91 (360)
T ss_pred CCCCCCCccchHHHHHH
Confidence 88889999997777655
No 191
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=20.65 E-value=1.3e+02 Score=17.99 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=18.8
Q ss_pred eEEeccchhccC---hHHHHHHHHh
Q psy631 88 DICVTEAYRKKG---FGAALFESVV 109 (110)
Q Consensus 88 ~~~v~p~~rg~G---ig~~ll~~~~ 109 (110)
-+++..+.=|+| +|+.||+..+
T Consensus 87 ~v~i~~~~~G~g~~~LG~~Lm~~f~ 111 (194)
T TIGR03527 87 VVVITSDKLGEGDEELGRILMKGFI 111 (194)
T ss_pred EEEEecCcCCCCcHHHHHHHHHHHH
Confidence 578899999998 9999998754
No 192
>KOG0524|consensus
Probab=20.18 E-value=1e+02 Score=19.83 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEeccchhccChHHHHHHHHh
Q psy631 89 ICVTEAYRKKGFGAALFESVV 109 (110)
Q Consensus 89 ~~v~p~~rg~Gig~~ll~~~~ 109 (110)
+.|...|+..|+|..+...+.
T Consensus 292 vtVe~~~p~~gigaei~A~i~ 312 (359)
T KOG0524|consen 292 VTVEEGWPQFGIGAEICAQIM 312 (359)
T ss_pred EEEeccccccchhHHHHHHHH
Confidence 569999999999999988764
No 193
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=20.08 E-value=37 Score=17.00 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=6.0
Q ss_pred CCcEEEE
Q psy631 63 TNKLVGY 69 (110)
Q Consensus 63 ~~~ivG~ 69 (110)
+|+|||+
T Consensus 70 ~GrIVG~ 76 (77)
T PF12324_consen 70 QGRIVGY 76 (77)
T ss_dssp TSEEEES
T ss_pred CCCeecC
Confidence 7999995
Done!