BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6316
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXX 81
+R+ IV VLGHVD GKT +LD +R + V EAGGITQ IGAT +P D I
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDF--- 59
Query: 82 XXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINI 141
DTPGHE+F+ LR RG +L D+AIL+VDI G +PQT E++NI
Sbjct: 60 --LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117
Query: 142 LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182
L+ +TPFVVA NKIDR++ W R + Q+ VQ
Sbjct: 118 LRXYRTPFVVAANKIDRIHGWRVHEGRPFXETFSKQDIQVQ 158
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXX 81
+R+ IV VLGHVD GKT +LD +R + V EAGGITQ IGAT +P D I
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDF--- 59
Query: 82 XXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINI 141
DTPGHE+F+ LR RG +L D+AIL+VDI G +PQT E++NI
Sbjct: 60 --LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117
Query: 142 LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182
L+ +TPFVVA NKIDR++ W R + Q+ VQ
Sbjct: 118 LRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 23/136 (16%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXX 82
R +V ++GHVD GKT +LD +R + V + EAGGITQ IGA V N K +
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-----NDKKI---- 57
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
DTPGHE+F+ +R RG+ + DI ILVV G+ PQT+E+IN
Sbjct: 58 --------------TFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHA 103
Query: 143 KSKKTPFVVALNKIDR 158
K+ P +VA+NK+D+
Sbjct: 104 KAANVPIIVAINKMDK 119
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 74/136 (54%), Gaps = 22/136 (16%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXX 82
R+ +V ++GHVD GKT +LDKLR+T V EAGGITQ IGA V + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
DTPGH +FS +R RG+ + DI ILVV G+ QT+ESI
Sbjct: 56 ---------------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHA 100
Query: 143 KSKKTPFVVALNKIDR 158
K P V+A+NK D+
Sbjct: 101 KDAHVPIVLAINKCDK 116
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 76/136 (55%), Gaps = 23/136 (16%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXX 82
RA +V ++GHVD GKT +L+ +R T V GEAGGITQ IGA +V +
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE------------- 49
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
DTPGH +F+++R RG+ DI +LVV G+ PQTIE+I
Sbjct: 50 ----------NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHA 99
Query: 143 KSKKTPFVVALNKIDR 158
K+ + P VVA+NKID+
Sbjct: 100 KAAQVPVVVAVNKIDK 115
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 28 CVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXXXXXXX 87
++ H D GKT + +KL AG I + A + +D E K
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSD-WXELEKQRGISVTTSVX 75
Query: 88 XXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT 147
DTPGH F+ R + D A+ V+D G+EP+TI+ + + + T
Sbjct: 76 QFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHT 135
Query: 148 PFVVALNKIDR 158
P +NK DR
Sbjct: 136 PIXTFINKXDR 146
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 28 CVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAI---RENTKHVRXXXXX 84
++ H D GKT + +KL AG + + A + +D + RE V
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISV----TT 90
Query: 85 XXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 144
DTPGH+ FS R + D A++V+D G+E QT + +++ +
Sbjct: 91 SVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM 150
Query: 145 KKTPFVVALNKIDR 158
+ TP + +NK+DR
Sbjct: 151 RATPVMTFVNKMDR 164
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGHE FS R + D ++V+D G+E +T + + + + + TP + +NK+DR
Sbjct: 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDR 146
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGHE FS R + D ++V+D G+E +T + + + + + TP + +NK+DR
Sbjct: 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDR 146
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-----IESINILKSKKTPFVVALN 154
DTPGHE ++ G+S CD+AI++VD +G++ QT I S+ +K VVA+N
Sbjct: 110 DTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKH----IVVAIN 165
Query: 155 KID 157
K D
Sbjct: 166 KXD 168
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 15 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 71
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 72 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 122
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 123 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 163
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 27 VCVLGHVDTGKTKILDKL------RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDK---APEERARGITINTAHVEY 70
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D PGH + G++ D AILVV G PQT E I
Sbjct: 71 ETAKRHYSHV---------DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQE 178
+ + P++V +NK+D + + ++ +VRD++ E
Sbjct: 122 LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 37/147 (25%)
Query: 28 CVLGHVDTGKTKILDKL-----------RRTNVQDG----EAGGITQQIGATNVPADAIR 72
C++ HVD GK+ + D+L +R + D GIT ++ A + A
Sbjct: 10 CIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKD 69
Query: 73 ENTKHVRXXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE 132
NT + DTPGH FS +R + C+ A+L++D G+E
Sbjct: 70 GNTYKLHLI------------------DTPGHVDFSYEVSRALAACEGALLLIDASQGIE 111
Query: 133 PQTIESINILKSKKTPFVV--ALNKID 157
QT+ N K+ + V+ +NKID
Sbjct: 112 AQTVA--NFWKAVEQDLVIIPVINKID 136
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
DTPGH FS +R + C+ A+LVVD G+E QT+ + V LNKID
Sbjct: 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
DTPGH FS +R + C+ A+LVVD G+E QT+ + V LNKID
Sbjct: 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 28 CVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPAD-AIRENTKHVRXXXXXXX 86
C++ HVD GK+ + D+L E Q + +V + I + VR
Sbjct: 10 CIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFYKAKD 69
Query: 87 XXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK 146
DTPGH FS +R + C+ A+L++D G+E QT+ N K+ +
Sbjct: 70 GNTYKLHLI----DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVA--NFWKAVE 123
Query: 147 TPFVV--ALNKID 157
V+ +NKID
Sbjct: 124 QDLVIIPVINKID 136
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 VCVLGHVDTGKTKILDKLRR--TNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXXXX 84
V +GHVD GKT + + G A Q A A I NT HV
Sbjct: 299 VGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT 358
Query: 85 XXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 144
D PGH + G++ D AILVV G PQT E I + +
Sbjct: 359 RHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 409
Query: 145 KKTPFVVA-LNKID 157
P+++ LNK D
Sbjct: 410 VGVPYIIVFLNKCD 423
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 27 VCVLGHVDTGKTKILDKLRR--TNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXXXX 84
V +GHVD GKT + + G A GIT I ++V D + HV
Sbjct: 14 VGTIGHVDHGKTTLTAAITTVLAKTYGGAARGIT--INTSHVEYDTPTRHYAHV------ 65
Query: 85 XXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 144
D PGH + G++ D AILVV G PQT E I + +
Sbjct: 66 ---------------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 110
Query: 145 KKTPFVVA-LNKID 157
P+++ LNK D
Sbjct: 111 VGVPYIIVFLNKCD 124
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
DTPGH F+ R + D A+ V+D G+EPQT + P +V +NK+D+L
Sbjct: 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Query: 160 -----YNWNTMNRR 168
Y+ +T++ R
Sbjct: 141 GANFEYSVSTLHDR 154
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
DTPGH F+ R + D A+ V+D G+EPQT + P +V +NK+D+L
Sbjct: 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Query: 160 -----YNWNTMNRR 168
Y+ +T++ R
Sbjct: 141 GANFEYSVSTLHDR 154
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 72 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 122
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 123 RQVGVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 72 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 122
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 123 RQVGVPYIIVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 72
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 73 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 123
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 124 RQVGVPYIIVFLNKCD 139
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 57/150 (38%), Gaps = 41/150 (27%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAG------------------GITQQIGATNVPA 68
+ VL HVD GKT + + L + E G GIT Q G T+
Sbjct: 5 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 64
Query: 69 DAIRENTKHVRXXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIM 128
ENTK DTPGH F R S+ D AIL++
Sbjct: 65 ----ENTK-------------------VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK 101
Query: 129 HGLEPQTIESINILKSKKTPFVVALNKIDR 158
G++ QT + L+ P + +NKID+
Sbjct: 102 DGVQAQTRILFHALRKMGIPTIFFINKIDQ 131
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 299 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 357 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 407
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 408 RQVGVPYIIVFLNKCD 423
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 15 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 72
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 73 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 123
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 124 RQVGVPYIIVFLNKCD 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 71
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 72 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 122
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 123 RQVGVPYIIVFLNKCD 138
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVP---ADAIRENTKHVRXXX 82
V +GHVD GKT + + T V GG + N P A I NT HV
Sbjct: 6 VGTIGHVDHGKTTLTAAI--TTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 63
Query: 83 XXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
D PGH + G++ D AILVV G PQT E I +
Sbjct: 64 PTRHYAHV---------DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLG 114
Query: 143 KSKKTPFVVA-LNKID 157
+ P+++ LNK D
Sbjct: 115 RQVGVPYIIVFLNKCD 130
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
DTPGH + R + D A+ V+D G+EPQT + P +V +NK+D+L
Sbjct: 81 DTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Query: 160 -----YNWNTMNRR 168
Y+ +T++ R
Sbjct: 141 GANFEYSVSTLHDR 154
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
DTPGH + R + D A+ V+D G+EPQT + P +V +NK+D+L
Sbjct: 81 DTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
Query: 160 -----YNWNTMNRR 168
Y+ +T++ R
Sbjct: 141 GANFEYSVSTLHDR 154
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 30/138 (21%)
Query: 27 VCVLGHVDTGKT---KILDKLRRTNVQD----GEAGGITQQIGATNVPADAIRENTKHVR 79
+ + GH+D GKT K+L ++ T+ D + GIT IG + + R
Sbjct: 22 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR------- 74
Query: 80 XXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI 139
D PGH + + D+A++VVD G + QT E +
Sbjct: 75 ----------------ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM 118
Query: 140 NILKSKKTPFVVALNKID 157
IL P +V + K D
Sbjct: 119 LILDHFNIPIIVVITKSD 136
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 39/222 (17%)
Query: 27 VCVLGHVDTGKTKILDKL--RRTNVQDGEAG--------------GITQQIGATNVPADA 70
+ V+ HVD GK+ + D L R + +AG GIT + A ++ ++
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 71 IRENTKHVRXXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHG 130
E+ K ++ D+PGH FS+ + D A++VVD + G
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLI-------DSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134
Query: 131 LEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTH-KTVES 189
+ QT + ++ VV +NK+DR + ++ S+E QT +TVES
Sbjct: 135 VCVQTETVLRQALGERIKPVVVINKVDRA----------LLELQVSKEDLYQTFARTVES 184
Query: 190 -----ARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKIS 226
+ E+ ++ P FG F + + +
Sbjct: 185 VNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFA 226
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 39/222 (17%)
Query: 27 VCVLGHVDTGKTKILDKL--RRTNVQDGEAG--------------GITQQIGATNVPADA 70
+ V+ HVD GK+ + D L R + +AG GIT + A ++ ++
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 71 IRENTKHVRXXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHG 130
E+ K ++ D+PGH FS+ + D A++VVD + G
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLI-------DSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134
Query: 131 LEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTH-KTVES 189
+ QT + ++ VV +NK+DR + ++ S+E QT +TVES
Sbjct: 135 VCVQTETVLRQALGERIKPVVVINKVDRA----------LLELQVSKEDLYQTFARTVES 184
Query: 190 -----ARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKIS 226
+ E+ ++ P FG F + + +
Sbjct: 185 VNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFA 226
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 50 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 108
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVA-LNKID 157
D PGH + G++ D AILVV G PQT E I + + P+++ LNK D
Sbjct: 22 DXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
DTPGH F+ R + D A++V + G++PQ+ K P + +NK+DR+
Sbjct: 87 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 146
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
DTPGH F+ R + D A++V + G++PQ+ K P + +NK+DR+
Sbjct: 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVA-LNKID 157
D PGH + G++ D AILVV G PQT E I + + P+++ LNK D
Sbjct: 22 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
D PGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
D PGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
D PGH F+ R + D AI+V D G+EPQ+ + K P + NK+D+
Sbjct: 83 DAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 27 VCVLGHVDTGKTKILDKLRRT------NVQDGEAGGITQQIGATNVPADAIRENTKHVRX 80
V +GHVD GKT + L NV+ + G I + A A I NT HV
Sbjct: 14 VGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDK---AREERARGITINTAHV-- 68
Query: 81 XXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN 140
D GH + G++ D AILVV G QT E I
Sbjct: 69 -------EYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHIL 121
Query: 141 ILKSKKTPFVVA-LNKIDRLYNWNTMN--RRDVRDIIKSQESSVQTHKTVESARKGQEIC 197
+ + ++V +NK+D + + ++ +VRD++ E + + +
Sbjct: 122 LARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGS-----AL 176
Query: 198 IKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257
+ +E + G EN++ V KI + +DA +Y R ++ D + ++ ++ VF
Sbjct: 177 LALEEMHKNRKTKRG----ENEW-VDKIW-ELLDAIDEYIRTRVRDVDKRFLMRVEDVFT 230
Query: 258 I 258
I
Sbjct: 231 I 231
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 27 VCVLGHVDTGKTKILDKLRR--TNVQDGEAG-GITQQIGATNVPADAIRENTKHVRXXXX 83
+ ++GHVD GKT + L T+ E GIT +IG + ++
Sbjct: 14 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPIC 73
Query: 84 XXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE-PQTIE---SI 139
D+PGHE+ G+SL D AILV+ PQT E ++
Sbjct: 74 PYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 133
Query: 140 NILKSKKTPFVVALNKIDRLYNWNTM-NRRDVRDIIKS 176
I+ K ++A NKI+ + + N R +++ IK
Sbjct: 134 QIIGQKN--IIIAQNKIELVDKEKALENYRQIKEFIKG 169
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158
DTPGH F+ R + D A++V G+EPQ+ P +V +NK+DR
Sbjct: 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 26/213 (12%)
Query: 27 VCVLGHVDTGKTKILDKLRR--TNVQDGEAG-GITQQIGATNVPADAIRENTKHVRXXXX 83
+ ++GHVD GKT + L T+ E GIT +IG + ++
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 84 XXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE-PQTIE---SI 139
D PGHE+ G+SL D AILV+ PQT E ++
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 140 NILKSKKTPFVVALNKIDRLYNWNTM-NRRDVRDIIKSQESSVQTHKTV--ESARKGQEI 196
I+ K ++A NKI+ + + N R +++ I E +V + + SA G I
Sbjct: 133 QIIGQKN--IIIAQNKIELVDKEKALENYRQIKEFI---EGTVAENAPIIPISALHGANI 187
Query: 197 CIKIEPI----------PGEAPKMFG-RHFDEN 218
+ ++ I P + PKM R FD N
Sbjct: 188 DVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 26/213 (12%)
Query: 27 VCVLGHVDTGKTKILDKLRR--TNVQDGEAG-GITQQIGATNVPADAIRENTKHVRXXXX 83
+ ++GHVD GKT + L T+ E GIT +IG + ++
Sbjct: 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72
Query: 84 XXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE-PQTIE---SI 139
D PGHE+ G+SL D AILV+ PQT E ++
Sbjct: 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132
Query: 140 NILKSKKTPFVVALNKIDRLYNWNTM-NRRDVRDIIKSQESSVQTHKTV--ESARKGQEI 196
I+ K ++A NKI+ + + N R +++ I E +V + + SA G I
Sbjct: 133 QIIGQKN--IIIAQNKIELVDKEKALENYRQIKEFI---EGTVAENAPIIPISALHGANI 187
Query: 197 CIKIEPI----------PGEAPKMFG-RHFDEN 218
+ ++ I P + PKM R FD N
Sbjct: 188 DVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHG------LE-PQTIESINILKSKK-TPFVV 151
D PGH F + G+S D A+LVVD LE QT E +L++ + VV
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 152 ALNKIDRLYNWNTMNRRDVRDII 174
++NK+D L +W+ +++++I+
Sbjct: 321 SVNKLD-LMSWSEDRFQEIKNIV 342
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQ--DGEAGGITQQI-GATNVPADA--IRENTK 76
M+ V ++G + GK+ +L+ L T V +AG ++ G N+P +A I +T
Sbjct: 7 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 66
Query: 77 HVRXXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 136
+ D GH S + + D+ + ++D G P+
Sbjct: 67 GI---------------YEPKKSDVLGH-SMVEIAKQSLEEADVILFMIDATEGWRPRDE 110
Query: 137 ESI-NILKSKKTPFVVALNKIDRL 159
E N +K P +V +NKID++
Sbjct: 111 EIYQNFIKPLNKPVIVVINKIDKI 134
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQ--DGEAGGITQQI-GATNVPADA--IRENTK 76
M+ V ++G + GK+ +L+ L T V +AG ++ G N+P +A I +T
Sbjct: 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 67
Query: 77 HVRXXXXXXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 136
+ D GH S + + D+ + ++D G P+
Sbjct: 68 GI---------------YEPKKSDVLGH-SMVEIAKQSLEEADVILFMIDATEGWRPRDE 111
Query: 137 ESI-NILKSKKTPFVVALNKIDRL 159
E N +K P +V +NKID++
Sbjct: 112 EIYQNFIKPLNKPVIVVINKIDKI 135
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE-PQT---IESINILKSKKTPFVVALNK 155
D PGHE+ G+SL D AILV+ PQT + ++ I+ K ++A NK
Sbjct: 89 DAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQIIGQKN--IIIAQNK 146
Query: 156 IDRLYNWNTM-NRRDVRDIIKS 176
I+ + + N R +++ I+
Sbjct: 147 IELVDKEKALENYRQIKEFIEG 168
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKT-PFVV 151
D PGH F G+S D AILVV G +E QT E I + K+ +V
Sbjct: 90 DAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIV 149
Query: 152 ALNKID 157
A+NK+D
Sbjct: 150 AVNKMD 155
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVP---ADAIRENTKHVRXXXX 83
V +GHVD GKT + + + + G A + N P A I N HV
Sbjct: 17 VGTIGHVDHGKTTLTAAITKILAEGGGAK-FKKYEEIDNAPEERARGITINAAHVEYSTA 75
Query: 84 XXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK 143
D PGH + G++ D ILVV G PQT E + + +
Sbjct: 76 ARHYAHT---------DCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLAR 126
Query: 144 SKKTPFVVA-LNKID 157
VV +NK D
Sbjct: 127 QIGVEHVVVYVNKAD 141
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIE---SINILKSKKTPFVVALNK 155
D+PGHE+ G+SL D AILV+ +PQT E ++ IL K ++ NK
Sbjct: 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDK--IIIVQNK 144
Query: 156 ID 157
ID
Sbjct: 145 ID 146
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVP---ADAIRENTKHVRXXXX 83
V +GHVD GKT + + + + G A + N P A I N HV
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAK-FKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 84 XXXXXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK 143
D PGH + G++ D ILVV G PQT E + + +
Sbjct: 65 ARHYAHT---------DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR 115
Query: 144 SKKTPFVVA-LNKID 157
VV +NK D
Sbjct: 116 QIGVEHVVVYVNKAD 130
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 100 DTPGHESFSNL-------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVA 152
DTPG + L R D ILV D P + +N+ K + PFVV
Sbjct: 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTD--SAPTPYEDDVVNLFKEMEIPFVVV 146
Query: 153 LNKIDRL 159
+NKID L
Sbjct: 147 VNKIDVL 153
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 100 DTPGHESFSNLR---NRGSSLCDIAILVVDIMHGLEPQTIES--------INILKSKKTP 148
DT G E F +L RG+ C +LV D+ + + I+S N+ + P
Sbjct: 64 DTAGQERFQSLGVAFYRGADCC---VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 149 FVVALNKIDRLYNWNTMNRRDVRDIIKS 176
FV+ NKID + ++ + +++ KS
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKS 148
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 21 FMRAAI----VCVLGHVDTGKTKILDKLRR-----TNVQDGEAGGITQQIGATNVPADAI 71
F+++A+ VLGHVD GK+ ++ +L Q + ++ +G ++ I
Sbjct: 160 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWI 219
Query: 72 RENTKHVRXXXXXXX---XXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIM 128
+ T R D PGH F G S D+AIL VD
Sbjct: 220 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 279
Query: 129 -------HGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVR 171
L+ QT E + + S ++A+NK+D + +W+ +++
Sbjct: 280 TNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV-DWSQQRFEEIK 329
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKTP-FVV 151
D PGH F G+S D AILVV G E QT E + + ++ +V
Sbjct: 93 DAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIV 152
Query: 152 ALNKID 157
A+NK+D
Sbjct: 153 AVNKMD 158
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKTP-FVV 151
D PGH F G+S D AILVV G E QT E + + ++ +V
Sbjct: 90 DAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIV 149
Query: 152 ALNKID 157
A+NK+D
Sbjct: 150 AVNKMD 155
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIE---SINILKSKKTPFVVALNK 155
D PGHE G++L D AILVV +PQT E ++ I+ K ++ NK
Sbjct: 87 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNK 144
Query: 156 ID 157
+D
Sbjct: 145 VD 146
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIE---SINILKSKKTPFVVALNK 155
D PGHE G++L D AILVV +PQT E ++ I+ K ++ NK
Sbjct: 93 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNK 150
Query: 156 ID 157
+D
Sbjct: 151 VD 152
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIE---SINILKSKKTPFVVALNK 155
D PGHE G++L D AILVV +PQT E ++ I+ K ++ NK
Sbjct: 92 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNK 149
Query: 156 ID 157
+D
Sbjct: 150 VD 151
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIE---SINILKSKKTPFVVALNK 155
D PGHE G++L D AILVV +PQT E ++ I+ K ++ NK
Sbjct: 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN--LIIVQNK 138
Query: 156 ID 157
+D
Sbjct: 139 VD 140
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 21 FMRAAI----VCVLGHVDTGKTKILDKLRR-----TNVQDGEAGGITQQIGATNVPADAI 71
F+++A+ VLGHVD GK+ ++ +L Q + ++ +G ++ I
Sbjct: 26 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWI 85
Query: 72 RENTKHVRXXXXXXX---XXXXXXXXXXXXXDTPGHESFSNLRNRGSSLCDIAILVVDIM 128
+ T R D PGH F G S D+AIL VD
Sbjct: 86 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 145
Query: 129 HG-------LEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVR 171
L+ QT E + + S ++A+NK+D + +W+ +++
Sbjct: 146 TNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV-DWSQQRFEEIK 195
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVV-----DIMHGLEP--QTIESINILKSKKTP-FVV 151
D PGH+SF G+S D+A+LV+ + G E QT E + K+ +V
Sbjct: 101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160
Query: 152 ALNKI-DRLYNWN 163
+NK+ D NW+
Sbjct: 161 LINKMDDPTVNWS 173
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXXXX 84
+ ++G + GK+ +L+KL + Q+I T+ A R +
Sbjct: 6 GFIAIVGRPNVGKSTLLNKL------------LGQKISITSRKAQTTRHRIVGIHTEGAY 53
Query: 85 XXXXXXXXXXXXXXXDTPG-----HESFSNLRNRG--SSLCDIAILVVDIMHGLE--PQT 135
DTPG + + L N+ SS+ D+ LV+ ++ G P
Sbjct: 54 QAIYV----------DTPGLHMEEKRAINRLMNKAASSSIGDVE-LVIFVVEGTRWTPDD 102
Query: 136 IESINILKSKKTPFVVALNKID 157
+N L+ K P ++A+NK+D
Sbjct: 103 EMVLNKLREGKAPVILAVNKVD 124
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRXXXXX 84
+ ++G + GK+ +L+KL + Q+I T+ A R +
Sbjct: 9 GFIAIVGRPNVGKSTLLNKL------------LGQKISITSRKAQTTRHRIVGIHTEGAY 56
Query: 85 XXXXXXXXXXXXXXXDTPG-----HESFSNLRNRG--SSLCDIAILVVDIMHGLE--PQT 135
DTPG + + L N+ SS+ D+ LV+ ++ G P
Sbjct: 57 QAIYV----------DTPGLHMEEKRAINRLMNKAASSSIGDVE-LVIFVVEGTRWTPDD 105
Query: 136 IESINILKSKKTPFVVALNKID 157
+N L+ K P ++A+NK+D
Sbjct: 106 EMVLNKLREGKAPVILAVNKVD 127
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 118 CDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173
D+ I V+ G+ E IL K P V+A+NK+D NT R ++ D
Sbjct: 83 ADVIIFXVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD-----NTEXRANIYDF 133
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 118 CDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173
D+ I +V+ G+ E IL K P V+A+NK+D NT R ++ D
Sbjct: 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD-----NTEMRANIYDF 153
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHG 130
D PGH+ + G+S DI +LV+ G
Sbjct: 127 DAPGHKGYVTNMINGASQADIGVLVISARRG 157
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 118 CDIAILVVDIMHGLE-----------PQTIESINILKSKKTPFVVALNKIDRLYN 161
D+A+LVVD E P +E L+ P +VA+NK+D++ N
Sbjct: 83 IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,807,842
Number of Sequences: 62578
Number of extensions: 243202
Number of successful extensions: 785
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 111
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)