Query psy6316
Match_columns 259
No_of_seqs 171 out of 2154
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 23:21:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 2.1E-31 4.7E-36 214.1 8.5 200 20-252 2-216 (298)
2 TIGR00436 era GTP-binding prot 99.9 1.7E-26 3.7E-31 191.1 14.0 189 26-249 2-205 (270)
3 PRK15494 era GTPase Era; Provi 99.9 7.2E-26 1.6E-30 192.4 12.3 194 23-250 51-258 (339)
4 COG5256 TEF1 Translation elong 99.9 4.2E-26 9.1E-31 190.3 9.1 211 25-259 8-243 (428)
5 PRK00089 era GTPase Era; Revie 99.9 4.4E-25 9.5E-30 185.0 13.5 196 21-249 2-212 (292)
6 KOG0084|consensus 99.9 3E-25 6.5E-30 167.3 7.4 153 25-203 10-167 (205)
7 KOG0092|consensus 99.9 3.1E-25 6.7E-30 166.6 5.2 161 24-210 5-169 (200)
8 KOG0094|consensus 99.9 1.5E-24 3.3E-29 163.0 7.9 164 18-207 16-184 (221)
9 PF02421 FeoB_N: Ferrous iron 99.9 3.9E-25 8.5E-30 165.7 3.9 145 26-201 2-154 (156)
10 cd04120 Rab12 Rab12 subfamily. 99.9 3.3E-24 7.2E-29 169.5 9.2 153 26-204 2-159 (202)
11 cd04171 SelB SelB subfamily. 99.9 5.6E-24 1.2E-28 163.0 10.1 152 26-202 2-160 (164)
12 cd04124 RabL2 RabL2 subfamily. 99.9 4.3E-24 9.3E-29 163.6 9.4 149 26-203 2-153 (161)
13 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-23 5E-28 164.4 13.2 165 25-198 3-172 (194)
14 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.1E-23 2.3E-28 162.2 10.7 155 25-203 1-161 (168)
15 cd04121 Rab40 Rab40 subfamily. 99.9 5.4E-24 1.2E-28 166.7 9.0 155 25-205 7-164 (189)
16 PF00009 GTP_EFTU: Elongation 99.9 7.3E-25 1.6E-29 172.1 3.8 171 24-202 3-181 (188)
17 cd01865 Rab3 Rab3 subfamily. 99.9 7.2E-24 1.6E-28 163.0 9.0 152 26-203 3-158 (165)
18 TIGR03598 GTPase_YsxC ribosome 99.9 2.1E-23 4.7E-28 162.5 11.7 164 3-197 1-179 (179)
19 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.2E-23 2.6E-28 164.2 9.7 157 26-204 2-162 (182)
20 cd04122 Rab14 Rab14 subfamily. 99.9 9.2E-24 2E-28 162.5 8.7 152 26-203 4-159 (166)
21 cd04127 Rab27A Rab27a subfamil 99.9 8.5E-24 1.8E-28 164.8 8.4 163 25-203 5-172 (180)
22 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.3E-23 2.7E-28 166.8 9.3 154 26-204 2-164 (201)
23 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.2E-23 2.6E-28 160.8 8.8 150 26-203 3-157 (162)
24 cd04119 RJL RJL (RabJ-Like) su 99.9 1.2E-23 2.6E-28 161.7 8.7 152 26-203 2-162 (168)
25 PRK05306 infB translation init 99.9 1.6E-23 3.5E-28 192.6 10.9 157 21-204 287-448 (787)
26 COG0532 InfB Translation initi 99.9 1.3E-23 2.8E-28 180.9 9.6 159 21-203 2-165 (509)
27 cd01867 Rab8_Rab10_Rab13_like 99.9 1.2E-23 2.5E-28 162.2 8.4 153 25-203 4-160 (167)
28 COG0050 TufB GTPases - transla 99.9 9.8E-24 2.1E-28 168.3 8.1 203 24-258 12-221 (394)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.5E-23 3.3E-28 161.3 8.8 153 25-203 3-159 (166)
30 cd01890 LepA LepA subfamily. 99.9 4.2E-23 9.1E-28 160.7 11.4 166 25-206 1-175 (179)
31 cd04106 Rab23_lke Rab23-like s 99.9 1.3E-23 2.8E-28 160.8 8.4 154 26-203 2-158 (162)
32 PRK12317 elongation factor 1-a 99.9 8.9E-24 1.9E-28 185.6 8.3 144 95-258 85-236 (425)
33 TIGR00475 selB selenocysteine- 99.9 1.5E-23 3.3E-28 189.3 9.6 149 26-200 2-158 (581)
34 cd04136 Rap_like Rap-like subf 99.9 1.6E-23 3.5E-28 160.4 8.4 153 25-204 2-159 (163)
35 TIGR00487 IF-2 translation ini 99.9 3.8E-23 8.3E-28 186.0 11.9 158 21-204 84-246 (587)
36 PLN03071 GTP-binding nuclear p 99.9 3.5E-23 7.6E-28 166.2 10.5 155 22-204 11-168 (219)
37 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.4E-23 5.1E-28 160.9 8.8 154 26-203 2-160 (170)
38 KOG0078|consensus 99.9 1.7E-23 3.6E-28 160.1 7.7 154 24-203 12-169 (207)
39 cd04140 ARHI_like ARHI subfami 99.9 2.4E-23 5.1E-28 160.1 8.6 152 26-204 3-161 (165)
40 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.9E-23 4.1E-28 160.2 7.8 152 26-204 4-160 (164)
41 cd01864 Rab19 Rab19 subfamily. 99.9 1.8E-23 4E-28 160.7 7.6 153 25-203 4-161 (165)
42 PRK12736 elongation factor Tu; 99.9 2.4E-23 5.1E-28 180.7 8.9 204 24-258 12-221 (394)
43 cd04113 Rab4 Rab4 subfamily. 99.9 2.3E-23 5E-28 159.4 7.9 152 26-203 2-157 (161)
44 TIGR00491 aIF-2 translation in 99.9 7.4E-23 1.6E-27 183.8 12.4 134 22-160 2-135 (590)
45 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 3E-23 6.6E-28 160.6 8.4 152 25-203 3-159 (172)
46 CHL00071 tufA elongation facto 99.9 3.4E-23 7.4E-28 180.5 9.7 212 25-258 13-231 (409)
47 cd01868 Rab11_like Rab11-like. 99.9 3.2E-23 6.9E-28 159.2 8.4 153 25-203 4-160 (165)
48 cd04175 Rap1 Rap1 subgroup. T 99.9 3E-23 6.5E-28 159.3 8.2 152 25-203 2-158 (164)
49 cd01866 Rab2 Rab2 subfamily. 99.9 4.8E-23 1E-27 158.9 8.8 152 25-202 5-160 (168)
50 cd00877 Ran Ran (Ras-related n 99.9 2.8E-23 6.1E-28 159.9 7.5 151 26-204 2-155 (166)
51 PTZ00369 Ras-like protein; Pro 99.9 4E-23 8.7E-28 162.4 8.5 154 24-204 5-163 (189)
52 KOG0098|consensus 99.9 3.5E-23 7.6E-28 154.5 7.5 153 25-203 7-163 (216)
53 PLN03126 Elongation factor Tu; 99.9 8.7E-23 1.9E-27 179.7 11.1 213 24-258 81-300 (478)
54 cd04109 Rab28 Rab28 subfamily. 99.9 4.9E-23 1.1E-27 165.1 8.8 155 26-205 2-163 (215)
55 cd01875 RhoG RhoG subfamily. 99.9 6.5E-23 1.4E-27 161.4 9.2 160 23-204 2-173 (191)
56 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-22 3.2E-27 174.3 12.0 181 25-233 160-364 (390)
57 cd01861 Rab6 Rab6 subfamily. 99.9 5.9E-23 1.3E-27 157.0 8.5 152 26-203 2-157 (161)
58 CHL00189 infB translation init 99.9 7.3E-23 1.6E-27 186.7 10.4 162 21-205 241-407 (742)
59 cd04149 Arf6 Arf6 subfamily. 99.9 1.2E-22 2.6E-27 156.7 10.1 152 24-204 9-166 (168)
60 cd04176 Rap2 Rap2 subgroup. T 99.9 4E-23 8.8E-28 158.4 7.5 152 25-203 2-158 (163)
61 cd04110 Rab35 Rab35 subfamily. 99.9 7.1E-23 1.5E-27 162.2 9.0 154 25-204 7-163 (199)
62 cd04144 Ras2 Ras2 subfamily. 99.9 4.6E-23 1E-27 162.2 7.9 152 26-204 1-159 (190)
63 cd04116 Rab9 Rab9 subfamily. 99.9 6.7E-23 1.5E-27 158.3 8.5 153 25-204 6-167 (170)
64 cd04112 Rab26 Rab26 subfamily. 99.9 6.7E-23 1.5E-27 161.3 8.7 154 26-205 2-160 (191)
65 cd01874 Cdc42 Cdc42 subfamily. 99.9 8.5E-23 1.8E-27 158.5 9.1 156 26-203 3-170 (175)
66 TIGR00485 EF-Tu translation el 99.9 6.5E-23 1.4E-27 178.2 9.1 204 24-258 12-221 (394)
67 smart00173 RAS Ras subfamily o 99.9 7.3E-23 1.6E-27 157.1 8.3 152 26-204 2-158 (164)
68 cd04117 Rab15 Rab15 subfamily. 99.9 9.4E-23 2E-27 156.2 8.8 152 26-203 2-157 (161)
69 cd04133 Rop_like Rop subfamily 99.9 7.5E-23 1.6E-27 158.6 8.3 157 26-204 3-169 (176)
70 PRK10512 selenocysteinyl-tRNA- 99.9 1.1E-22 2.4E-27 184.3 10.5 177 26-258 2-185 (614)
71 cd04132 Rho4_like Rho4-like su 99.9 1.4E-22 3E-27 159.0 9.7 156 26-203 2-162 (187)
72 PRK12735 elongation factor Tu; 99.9 7.2E-23 1.6E-27 177.8 8.7 206 24-258 12-223 (396)
73 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.6E-22 3.5E-27 162.7 10.0 159 24-204 13-184 (232)
74 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2E-22 4.4E-27 154.0 10.1 150 26-204 2-157 (159)
75 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-22 2.5E-27 158.5 8.8 156 25-202 6-174 (182)
76 cd01860 Rab5_related Rab5-rela 99.9 6.9E-23 1.5E-27 157.0 7.4 153 26-204 3-159 (163)
77 cd04160 Arfrp1 Arfrp1 subfamil 99.9 9.4E-23 2E-27 156.9 8.2 154 26-203 1-164 (167)
78 smart00175 RAB Rab subfamily o 99.9 1.1E-22 2.5E-27 155.8 8.6 152 26-203 2-157 (164)
79 TIGR00483 EF-1_alpha translati 99.9 7.6E-23 1.6E-27 179.7 8.6 144 95-258 86-238 (426)
80 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.2E-22 2.7E-27 156.9 8.7 152 24-201 2-162 (170)
81 COG1160 Predicted GTPases [Gen 99.9 1.3E-22 2.9E-27 172.1 9.5 153 25-208 4-165 (444)
82 cd04157 Arl6 Arl6 subfamily. 99.9 2.2E-22 4.7E-27 154.0 9.6 150 26-203 1-159 (162)
83 PRK04004 translation initiatio 99.9 3.4E-22 7.3E-27 180.2 12.3 134 21-160 3-137 (586)
84 cd04118 Rab24 Rab24 subfamily. 99.9 2.1E-22 4.5E-27 158.8 9.5 157 26-204 2-162 (193)
85 PLN03127 Elongation factor Tu; 99.9 2E-22 4.4E-27 176.5 10.4 203 24-258 61-272 (447)
86 cd01889 SelB_euk SelB subfamil 99.9 1.3E-22 2.7E-27 159.9 8.2 172 26-206 2-184 (192)
87 cd04166 CysN_ATPS CysN_ATPS su 99.9 9.8E-22 2.1E-26 156.6 13.3 115 93-212 76-194 (208)
88 cd04154 Arl2 Arl2 subfamily. 99.9 2E-22 4.2E-27 156.2 9.0 152 23-203 13-170 (173)
89 cd01863 Rab18 Rab18 subfamily. 99.9 9.7E-23 2.1E-27 155.9 7.0 151 26-203 2-157 (161)
90 PLN00043 elongation factor 1-a 99.9 1.2E-22 2.7E-27 178.0 8.6 146 94-258 85-244 (447)
91 cd01862 Rab7 Rab7 subfamily. 99.9 1.9E-22 4.2E-27 155.8 8.6 152 26-203 2-162 (172)
92 PLN03110 Rab GTPase; Provision 99.9 2.1E-22 4.6E-27 161.4 9.1 154 25-204 13-170 (216)
93 cd04126 Rab20 Rab20 subfamily. 99.9 2.7E-22 5.8E-27 160.4 9.6 153 26-204 2-186 (220)
94 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.6E-22 7.9E-27 152.5 9.8 149 27-203 2-157 (160)
95 cd04134 Rho3 Rho3 subfamily. 99.9 1.3E-22 2.7E-27 159.5 7.3 158 26-205 2-171 (189)
96 cd00881 GTP_translation_factor 99.9 4E-22 8.7E-27 156.2 10.2 173 26-205 1-184 (189)
97 PTZ00141 elongation factor 1- 99.9 1.3E-22 2.9E-27 177.9 8.2 146 94-258 85-244 (446)
98 KOG0460|consensus 99.9 1.5E-22 3.2E-27 164.5 7.7 205 24-258 54-265 (449)
99 cd04131 Rnd Rnd subfamily. Th 99.9 2.4E-22 5.3E-27 156.2 8.6 155 26-202 3-170 (178)
100 PRK00049 elongation factor Tu; 99.9 2.1E-22 4.5E-27 174.8 9.0 206 24-258 12-223 (396)
101 KOG1145|consensus 99.9 2.2E-22 4.7E-27 172.5 8.8 154 21-200 150-308 (683)
102 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.8E-22 6.2E-27 153.8 8.7 153 26-203 2-159 (164)
103 cd01871 Rac1_like Rac1-like su 99.9 3.3E-22 7.2E-27 155.0 9.0 156 26-203 3-170 (174)
104 COG0218 Predicted GTPase [Gene 99.9 4.1E-22 9E-27 152.5 9.2 166 2-198 6-187 (200)
105 TIGR02034 CysN sulfate adenyly 99.9 2.9E-22 6.3E-27 174.5 9.5 144 94-257 80-227 (406)
106 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.1E-21 2.5E-26 154.1 11.8 165 25-198 3-173 (195)
107 cd04114 Rab30 Rab30 subfamily. 99.9 3.3E-22 7.1E-27 154.2 8.4 153 25-203 8-164 (169)
108 cd01897 NOG NOG1 is a nucleola 99.9 8.2E-22 1.8E-26 151.8 10.5 149 25-203 1-163 (168)
109 cd00154 Rab Rab family. Rab G 99.9 4.7E-22 1E-26 151.0 8.8 152 26-203 2-157 (159)
110 cd04125 RabA_like RabA-like su 99.9 4.5E-22 9.8E-27 156.2 8.9 153 26-204 2-158 (188)
111 TIGR03680 eif2g_arch translati 99.9 4.4E-22 9.5E-27 173.4 9.5 201 24-258 4-216 (406)
112 smart00176 RAN Ran (Ras-relate 99.9 2.4E-22 5.1E-27 158.7 7.1 147 30-204 1-150 (200)
113 smart00177 ARF ARF-like small 99.9 8.9E-22 1.9E-26 152.8 10.0 151 24-203 13-169 (175)
114 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 6.8E-22 1.5E-26 151.8 9.2 149 27-203 2-161 (164)
115 cd04151 Arl1 Arl1 subfamily. 99.9 6.7E-22 1.5E-26 150.9 9.2 150 26-204 1-156 (158)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1E-21 2.2E-26 152.4 10.3 150 25-203 16-171 (174)
117 cd01892 Miro2 Miro2 subfamily. 99.9 2.3E-22 5E-27 155.2 6.6 154 24-203 4-161 (169)
118 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.1E-22 8.8E-27 155.8 8.0 156 24-203 3-165 (183)
119 KOG1423|consensus 99.9 9.1E-22 2E-26 158.0 9.8 205 15-247 63-310 (379)
120 PLN00223 ADP-ribosylation fact 99.9 1.3E-21 2.7E-26 152.7 10.3 151 24-203 17-173 (181)
121 cd04111 Rab39 Rab39 subfamily. 99.9 5.6E-22 1.2E-26 158.4 8.5 155 25-204 3-162 (211)
122 PRK05124 cysN sulfate adenylyl 99.9 8.2E-22 1.8E-26 174.2 10.1 144 94-257 107-255 (474)
123 cd04123 Rab21 Rab21 subfamily. 99.9 6.4E-22 1.4E-26 151.2 8.1 152 26-203 2-157 (162)
124 cd04142 RRP22 RRP22 subfamily. 99.9 1E-21 2.2E-26 155.2 9.1 154 26-205 2-171 (198)
125 smart00174 RHO Rho (Ras homolo 99.9 7.1E-22 1.5E-26 153.1 7.8 155 27-203 1-167 (174)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 9.9E-22 2.1E-26 149.9 8.4 150 26-204 1-156 (158)
127 KOG0080|consensus 99.9 2.3E-22 4.9E-27 146.5 4.3 153 25-203 12-169 (209)
128 KOG1144|consensus 99.9 7.6E-22 1.6E-26 173.8 8.4 181 17-202 468-681 (1064)
129 KOG0394|consensus 99.9 2.8E-22 6.1E-27 149.4 4.9 156 24-203 9-173 (210)
130 PLN03118 Rab family protein; P 99.9 1.4E-21 3E-26 156.2 9.2 154 25-205 15-174 (211)
131 cd01893 Miro1 Miro1 subfamily. 99.9 2.4E-21 5.3E-26 149.1 10.2 152 26-203 2-159 (166)
132 PLN03108 Rab family protein; P 99.9 1.2E-21 2.7E-26 156.3 8.8 153 25-203 7-163 (210)
133 cd04158 ARD1 ARD1 subfamily. 99.9 1.8E-21 4E-26 150.2 9.4 149 26-204 1-157 (169)
134 cd01888 eIF2_gamma eIF2-gamma 99.9 1.8E-21 4E-26 154.5 9.3 177 26-205 2-196 (203)
135 cd04130 Wrch_1 Wrch-1 subfamil 99.9 9.8E-22 2.1E-26 152.3 7.2 156 26-203 2-169 (173)
136 smart00178 SAR Sar1p-like memb 99.9 2.3E-21 5E-26 151.7 9.3 151 25-204 18-181 (184)
137 KOG0087|consensus 99.9 5.2E-22 1.1E-26 151.4 5.3 152 25-202 15-170 (222)
138 cd04177 RSR1 RSR1 subgroup. R 99.9 1.2E-21 2.7E-26 151.0 7.5 152 26-204 3-160 (168)
139 COG1160 Predicted GTPases [Gen 99.9 2E-21 4.4E-26 164.9 9.4 157 24-203 178-346 (444)
140 cd04135 Tc10 TC10 subfamily. 99.9 1.2E-21 2.6E-26 151.7 7.4 156 26-203 2-169 (174)
141 cd04143 Rhes_like Rhes_like su 99.9 2.3E-21 5.1E-26 157.9 9.2 154 26-205 2-168 (247)
142 PRK04000 translation initiatio 99.9 2.1E-21 4.5E-26 169.1 9.4 199 25-258 10-221 (411)
143 cd00157 Rho Rho (Ras homology) 99.8 1.6E-21 3.6E-26 150.4 7.6 156 26-203 2-168 (171)
144 cd04139 RalA_RalB RalA/RalB su 99.8 2.4E-21 5.2E-26 148.4 8.4 151 26-203 2-157 (164)
145 PRK00454 engB GTP-binding prot 99.8 5.2E-21 1.1E-25 151.1 10.5 168 3-201 7-187 (196)
146 cd04161 Arl2l1_Arl13_like Arl2 99.8 4E-21 8.7E-26 148.0 9.6 149 26-203 1-164 (167)
147 KOG0079|consensus 99.8 1.2E-21 2.6E-26 140.7 6.1 150 26-201 10-162 (198)
148 PRK05506 bifunctional sulfate 99.8 1.8E-21 3.9E-26 178.4 8.9 146 92-257 102-251 (632)
149 PTZ00133 ADP-ribosylation fact 99.8 5E-21 1.1E-25 149.5 10.0 150 25-203 18-173 (182)
150 PTZ00327 eukaryotic translatio 99.8 3.7E-21 8E-26 168.4 10.3 202 24-258 34-253 (460)
151 cd04147 Ras_dva Ras-dva subfam 99.8 3.1E-21 6.8E-26 152.7 8.3 156 26-206 1-161 (198)
152 cd01898 Obg Obg subfamily. Th 99.8 5.3E-21 1.1E-25 147.5 9.4 150 26-203 2-166 (170)
153 cd04159 Arl10_like Arl10-like 99.8 6.1E-21 1.3E-25 144.9 9.4 149 27-203 2-156 (159)
154 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 5.8E-21 1.2E-25 152.9 9.6 157 25-203 2-171 (222)
155 cd01879 FeoB Ferrous iron tran 99.8 2.1E-21 4.6E-26 147.8 6.7 143 29-202 1-151 (158)
156 cd04148 RGK RGK subfamily. Th 99.8 4.2E-21 9E-26 154.4 8.6 151 26-204 2-159 (221)
157 cd01870 RhoA_like RhoA-like su 99.8 2.2E-21 4.9E-26 150.4 6.8 157 25-203 2-170 (175)
158 cd00879 Sar1 Sar1 subfamily. 99.8 4.4E-21 9.5E-26 150.8 8.5 153 22-203 17-186 (190)
159 TIGR02528 EutP ethanolamine ut 99.8 2.5E-21 5.4E-26 145.1 6.7 134 26-203 2-140 (142)
160 TIGR03594 GTPase_EngA ribosome 99.8 4.7E-21 1E-25 168.9 9.6 157 24-204 172-340 (429)
161 cd01894 EngA1 EngA1 subfamily. 99.8 4.4E-21 9.6E-26 145.8 8.2 144 28-203 1-153 (157)
162 cd04146 RERG_RasL11_like RERG/ 99.8 2E-21 4.4E-26 149.3 6.1 151 26-203 1-159 (165)
163 PRK03003 GTP-binding protein D 99.8 1.4E-20 3E-25 167.2 12.1 157 24-205 211-379 (472)
164 cd04165 GTPBP1_like GTPBP1-lik 99.8 2E-20 4.3E-25 150.1 11.4 170 27-200 2-215 (224)
165 TIGR01393 lepA GTP-binding pro 99.8 7.8E-21 1.7E-25 171.9 10.0 107 96-206 72-178 (595)
166 cd01883 EF1_alpha Eukaryotic e 99.8 1.5E-20 3.2E-25 151.0 10.4 106 93-198 76-195 (219)
167 KOG0093|consensus 99.8 5.9E-21 1.3E-25 137.1 7.1 161 14-202 13-177 (193)
168 cd04102 RabL3 RabL3 (Rab-like3 99.8 4.7E-20 1E-24 145.6 12.9 154 26-196 2-178 (202)
169 PRK05291 trmE tRNA modificatio 99.8 1.2E-20 2.6E-25 166.0 10.5 145 25-206 216-368 (449)
170 cd01895 EngA2 EngA2 subfamily. 99.8 2.2E-20 4.7E-25 144.1 10.6 155 24-201 2-168 (174)
171 PRK04213 GTP-binding protein; 99.8 9.9E-21 2.1E-25 150.2 8.7 149 24-205 9-189 (201)
172 cd04137 RheB Rheb (Ras Homolog 99.8 5.3E-21 1.2E-25 149.0 7.0 153 25-204 2-159 (180)
173 PRK10218 GTP-binding protein; 99.8 1.1E-20 2.4E-25 170.3 10.1 203 25-256 6-213 (607)
174 cd01886 EF-G Elongation factor 99.8 1.2E-19 2.5E-24 149.5 14.9 163 26-198 1-166 (270)
175 PRK03003 GTP-binding protein D 99.8 1.5E-20 3.2E-25 167.0 10.2 151 25-206 39-197 (472)
176 cd00876 Ras Ras family. The R 99.8 7.6E-21 1.7E-25 144.9 7.2 152 26-204 1-157 (160)
177 cd04163 Era Era subfamily. Er 99.8 3.4E-20 7.3E-25 141.9 10.4 154 23-203 2-164 (168)
178 cd01885 EF2 EF2 (for archaea a 99.8 4.1E-20 8.9E-25 147.7 10.7 66 95-160 74-139 (222)
179 KOG0086|consensus 99.8 2.4E-20 5.3E-25 134.8 8.2 150 25-200 10-163 (214)
180 PF00071 Ras: Ras family; Int 99.8 9.6E-21 2.1E-25 144.9 6.6 151 26-202 1-155 (162)
181 TIGR01394 TypA_BipA GTP-bindin 99.8 2.7E-20 5.8E-25 168.1 10.0 203 25-256 2-209 (594)
182 PRK12299 obgE GTPase CgtA; Rev 99.8 4.6E-20 1E-24 156.0 10.6 152 25-203 159-323 (335)
183 COG0486 ThdF Predicted GTPase 99.8 1.8E-20 4E-25 159.5 8.2 148 25-205 218-373 (454)
184 PRK05433 GTP-binding protein L 99.8 3.8E-20 8.1E-25 167.6 10.3 107 96-206 76-182 (600)
185 cd01873 RhoBTB RhoBTB subfamil 99.8 3.2E-20 7E-25 146.2 8.6 162 26-203 4-191 (195)
186 PRK09554 feoB ferrous iron tra 99.8 7.7E-20 1.7E-24 169.2 12.3 152 22-204 1-164 (772)
187 KOG0458|consensus 99.8 2.8E-20 6E-25 161.0 8.7 193 25-257 178-415 (603)
188 cd01878 HflX HflX subfamily. 99.8 4.4E-20 9.5E-25 146.8 9.1 145 25-202 42-199 (204)
189 TIGR03156 GTP_HflX GTP-binding 99.8 4.4E-20 9.6E-25 157.3 9.6 145 25-203 190-347 (351)
190 PRK00093 GTP-binding protein D 99.8 5.7E-20 1.2E-24 162.3 10.6 155 24-203 173-339 (435)
191 COG2895 CysN GTPases - Sulfate 99.8 4.1E-20 8.8E-25 151.2 8.8 115 93-212 85-203 (431)
192 cd04103 Centaurin_gamma Centau 99.8 5.1E-20 1.1E-24 140.5 8.7 146 26-203 2-154 (158)
193 KOG0095|consensus 99.8 2.6E-20 5.7E-25 134.1 6.5 152 25-203 8-164 (213)
194 PRK00093 GTP-binding protein D 99.8 6.3E-20 1.4E-24 162.0 10.3 149 25-205 2-159 (435)
195 TIGR03594 GTPase_EngA ribosome 99.8 5.8E-20 1.3E-24 162.0 9.4 147 26-204 1-156 (429)
196 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.3E-20 2E-24 159.6 10.4 144 25-203 204-355 (442)
197 cd04155 Arl3 Arl3 subfamily. 99.8 8.2E-20 1.8E-24 141.3 8.8 152 24-204 14-171 (173)
198 COG2229 Predicted GTPase [Gene 99.8 2.3E-19 4.9E-24 134.5 10.7 166 21-204 7-174 (187)
199 PF00025 Arf: ADP-ribosylation 99.8 3.3E-20 7E-25 143.9 6.4 151 24-203 14-171 (175)
200 cd04129 Rho2 Rho2 subfamily. 99.8 5.7E-20 1.2E-24 144.2 7.6 157 26-204 3-169 (187)
201 KOG0462|consensus 99.8 6.5E-20 1.4E-24 157.4 8.4 166 23-212 59-239 (650)
202 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.1E-19 2.4E-24 137.9 8.8 141 26-202 3-151 (157)
203 TIGR02729 Obg_CgtA Obg family 99.8 1.1E-19 2.4E-24 153.5 9.2 151 25-203 158-324 (329)
204 PTZ00132 GTP-binding nuclear p 99.8 1.8E-19 3.9E-24 144.5 8.8 152 24-203 9-163 (215)
205 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-19 2.6E-24 160.7 8.4 152 23-205 2-161 (653)
206 PRK09518 bifunctional cytidyla 99.8 4E-19 8.7E-24 164.8 12.2 157 24-205 450-618 (712)
207 PRK15467 ethanolamine utilizat 99.8 1E-19 2.2E-24 138.7 6.7 138 26-205 3-144 (158)
208 cd04170 EF-G_bact Elongation f 99.8 1.2E-18 2.5E-23 144.3 13.5 167 26-205 1-170 (268)
209 cd04167 Snu114p Snu114p subfam 99.8 3.2E-19 6.9E-24 142.8 9.7 133 26-159 2-136 (213)
210 PRK09518 bifunctional cytidyla 99.8 2.5E-19 5.3E-24 166.2 10.3 151 25-206 276-434 (712)
211 PRK12297 obgE GTPase CgtA; Rev 99.8 3.3E-19 7.1E-24 154.5 10.4 170 3-203 127-322 (424)
212 KOG0073|consensus 99.8 6.9E-19 1.5E-23 128.8 10.3 148 21-200 16-170 (185)
213 cd04168 TetM_like Tet(M)-like 99.8 6.2E-19 1.3E-23 142.8 10.6 129 26-160 1-130 (237)
214 cd04169 RF3 RF3 subfamily. Pe 99.8 1.2E-18 2.5E-23 143.5 11.6 132 25-160 3-137 (267)
215 TIGR00231 small_GTP small GTP- 99.8 5.4E-19 1.2E-23 133.8 8.9 151 25-202 2-158 (161)
216 PRK12296 obgE GTPase CgtA; Rev 99.8 5.9E-19 1.3E-23 154.8 10.1 150 25-203 160-335 (500)
217 PRK11058 GTPase HflX; Provisio 99.8 1.1E-18 2.5E-23 151.9 10.1 150 25-206 198-360 (426)
218 KOG0091|consensus 99.8 8.2E-19 1.8E-23 128.3 7.7 149 27-200 11-165 (213)
219 cd01881 Obg_like The Obg-like 99.8 7.6E-19 1.6E-23 136.1 7.8 146 29-203 1-172 (176)
220 KOG0088|consensus 99.8 1.1E-19 2.3E-24 132.2 2.6 153 25-203 14-170 (218)
221 PLN00023 GTP-binding protein; 99.8 4.7E-18 1E-22 140.9 12.0 133 20-160 17-165 (334)
222 KOG0461|consensus 99.8 2.5E-18 5.4E-23 140.4 9.1 194 25-258 8-213 (522)
223 TIGR00437 feoB ferrous iron tr 99.8 9E-19 2E-23 158.6 6.6 144 31-205 1-152 (591)
224 KOG0081|consensus 99.8 2.2E-19 4.9E-24 130.7 2.1 155 27-198 12-171 (219)
225 cd00882 Ras_like_GTPase Ras-li 99.8 1.8E-18 3.8E-23 129.8 6.9 149 29-203 1-155 (157)
226 KOG0097|consensus 99.7 4.7E-18 1E-22 121.5 7.9 149 25-199 12-164 (215)
227 cd01876 YihA_EngB The YihA (En 99.7 7.7E-18 1.7E-22 129.1 9.9 148 27-201 2-164 (170)
228 cd00880 Era_like Era (E. coli 99.7 5.1E-18 1.1E-22 128.6 8.5 150 29-202 1-158 (163)
229 TIGR00484 EF-G translation elo 99.7 6.5E-17 1.4E-21 149.8 17.0 159 24-193 10-171 (689)
230 PF10662 PduV-EutP: Ethanolami 99.7 4.6E-18 9.9E-23 124.8 7.4 134 26-203 3-141 (143)
231 PRK09866 hypothetical protein; 99.7 1.3E-17 2.7E-22 147.6 11.4 112 94-206 230-351 (741)
232 KOG0395|consensus 99.7 2.9E-18 6.4E-23 134.5 6.6 158 23-207 2-164 (196)
233 KOG0070|consensus 99.7 1.8E-18 3.8E-23 129.9 4.6 152 20-203 16-173 (181)
234 COG0481 LepA Membrane GTPase L 99.7 1.5E-18 3.3E-23 147.0 4.5 169 24-214 9-192 (603)
235 COG5257 GCD11 Translation init 99.7 1.9E-18 4.2E-23 139.8 4.7 178 24-203 10-197 (415)
236 KOG0075|consensus 99.7 2.7E-18 5.9E-23 123.4 4.8 152 21-203 20-177 (186)
237 PRK00007 elongation factor G; 99.7 4.1E-17 8.8E-22 151.0 13.4 165 24-198 10-177 (693)
238 COG1100 GTPase SAR1 and relate 99.7 2E-17 4.3E-22 132.9 9.1 116 25-161 6-126 (219)
239 KOG0083|consensus 99.7 1.4E-18 3E-23 123.0 2.0 149 29-203 2-155 (192)
240 COG1084 Predicted GTPase [Gene 99.7 9E-17 1.9E-21 131.1 12.5 161 7-198 153-326 (346)
241 PRK12739 elongation factor G; 99.7 6.1E-17 1.3E-21 149.9 12.8 162 23-194 7-170 (691)
242 cd04104 p47_IIGP_like p47 (47- 99.7 4.3E-17 9.3E-22 128.8 9.4 115 25-160 2-121 (197)
243 cd04105 SR_beta Signal recogni 99.7 1.7E-16 3.6E-21 125.9 12.5 115 25-161 1-124 (203)
244 PRK00741 prfC peptide chain re 99.7 5.9E-17 1.3E-21 144.7 10.6 131 24-160 10-145 (526)
245 COG1217 TypA Predicted membran 99.7 9.4E-17 2E-21 135.9 10.7 198 25-251 6-208 (603)
246 PRK14845 translation initiatio 99.7 4.6E-17 1E-21 153.3 9.9 122 36-162 473-594 (1049)
247 PF01926 MMR_HSR1: 50S ribosom 99.7 1.7E-16 3.7E-21 114.7 10.5 107 26-155 1-116 (116)
248 COG3276 SelB Selenocysteine-sp 99.7 3.7E-17 8.1E-22 138.0 8.0 177 26-258 2-182 (447)
249 TIGR00503 prfC peptide chain r 99.7 2E-16 4.3E-21 141.3 12.9 150 23-179 10-161 (527)
250 COG3596 Predicted GTPase [Gene 99.7 5.7E-17 1.2E-21 129.3 7.7 166 21-208 36-222 (296)
251 PF08477 Miro: Miro-like prote 99.7 4.2E-17 9E-22 118.3 5.8 111 26-157 1-119 (119)
252 KOG1489|consensus 99.7 1.3E-16 2.8E-21 129.2 8.1 148 25-202 197-361 (366)
253 KOG0076|consensus 99.7 6.5E-17 1.4E-21 119.7 5.0 155 25-203 18-182 (197)
254 KOG0071|consensus 99.7 9.6E-17 2.1E-21 114.6 5.1 151 21-203 17-173 (180)
255 PRK13351 elongation factor G; 99.7 5E-16 1.1E-20 144.1 10.8 132 24-161 8-140 (687)
256 PRK07560 elongation factor EF- 99.7 6.1E-16 1.3E-20 144.0 11.4 135 24-161 20-154 (731)
257 PTZ00416 elongation factor 2; 99.7 5.9E-16 1.3E-20 145.5 10.8 65 95-159 93-157 (836)
258 TIGR00490 aEF-2 translation el 99.6 1E-15 2.2E-20 142.2 11.7 80 95-174 87-166 (720)
259 PLN00116 translation elongatio 99.6 5.6E-16 1.2E-20 145.9 10.1 65 96-160 100-164 (843)
260 COG0480 FusA Translation elong 99.6 6.4E-16 1.4E-20 140.7 10.0 147 23-176 9-158 (697)
261 cd01896 DRG The developmentall 99.6 9.7E-16 2.1E-20 124.0 9.6 82 26-130 2-90 (233)
262 cd01850 CDC_Septin CDC/Septin. 99.6 3.8E-15 8.2E-20 123.3 11.9 142 25-187 5-181 (276)
263 COG2262 HflX GTPases [General 99.6 7.6E-16 1.7E-20 129.3 7.7 149 24-205 192-353 (411)
264 KOG4252|consensus 99.6 1.4E-16 3.1E-21 118.4 2.5 154 24-203 20-176 (246)
265 KOG0393|consensus 99.6 3.2E-16 6.9E-21 120.7 3.9 158 24-202 4-173 (198)
266 KOG1191|consensus 99.6 1.4E-15 3E-20 129.8 6.8 158 24-205 268-447 (531)
267 PF09439 SRPRB: Signal recogni 99.6 5.5E-15 1.2E-19 113.4 9.2 113 24-161 3-127 (181)
268 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.1E-14 2.4E-19 115.0 10.9 113 26-160 2-130 (196)
269 PTZ00099 rab6; Provisional 99.6 1.6E-15 3.6E-20 117.5 5.8 107 96-207 31-141 (176)
270 cd01882 BMS1 Bms1. Bms1 is an 99.6 2.8E-14 6.1E-19 114.9 12.6 144 22-196 37-184 (225)
271 PF05049 IIGP: Interferon-indu 99.6 1.5E-15 3.3E-20 128.5 5.4 195 24-239 35-250 (376)
272 COG4108 PrfC Peptide chain rel 99.6 8.7E-15 1.9E-19 123.3 9.8 70 91-160 78-147 (528)
273 COG0536 Obg Predicted GTPase [ 99.6 7.4E-15 1.6E-19 120.5 8.1 152 25-203 160-328 (369)
274 KOG0072|consensus 99.6 3.3E-15 7.2E-20 107.3 4.8 152 20-203 17-174 (182)
275 KOG0074|consensus 99.6 1.3E-14 2.8E-19 104.0 7.4 153 24-204 17-175 (185)
276 COG1163 DRG Predicted GTPase [ 99.5 2.2E-14 4.7E-19 116.9 7.0 84 25-131 64-154 (365)
277 PRK12740 elongation factor G; 99.5 8.6E-14 1.9E-18 129.1 11.0 104 95-203 61-164 (668)
278 PRK09602 translation-associate 99.5 4.6E-13 1E-17 115.8 14.6 102 26-128 3-113 (396)
279 cd01899 Ygr210 Ygr210 subfamil 99.5 8.8E-14 1.9E-18 116.9 9.4 102 27-129 1-111 (318)
280 COG5258 GTPBP1 GTPase [General 99.5 2.1E-14 4.5E-19 119.2 5.1 66 96-161 203-270 (527)
281 KOG1707|consensus 99.5 3E-13 6.5E-18 117.8 11.0 159 22-205 7-172 (625)
282 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 3.7E-13 8.1E-18 107.8 10.0 146 26-192 1-161 (232)
283 PRK09435 membrane ATPase/prote 99.5 7.9E-14 1.7E-18 117.3 6.3 126 95-230 150-288 (332)
284 PRK13768 GTPase; Provisional 99.5 5.5E-14 1.2E-18 115.0 4.8 106 95-203 98-242 (253)
285 KOG1490|consensus 99.4 5E-13 1.1E-17 114.5 9.3 167 5-198 151-331 (620)
286 PF00350 Dynamin_N: Dynamin fa 99.4 8.7E-13 1.9E-17 101.5 9.3 64 93-156 100-168 (168)
287 KOG0077|consensus 99.4 1.2E-12 2.5E-17 96.6 9.3 114 23-162 19-137 (193)
288 KOG0468|consensus 99.4 8.3E-13 1.8E-17 116.3 10.1 137 24-162 128-265 (971)
289 KOG1532|consensus 99.4 9.4E-14 2E-18 110.6 3.6 116 95-210 117-266 (366)
290 KOG3883|consensus 99.4 1.9E-12 4.1E-17 94.2 9.9 151 24-200 9-167 (198)
291 smart00053 DYNc Dynamin, GTPas 99.4 7.8E-12 1.7E-16 100.8 14.1 66 95-160 126-206 (240)
292 TIGR02836 spore_IV_A stage IV 99.4 3.8E-12 8.3E-17 107.9 12.4 150 26-191 19-218 (492)
293 KOG0463|consensus 99.4 9.6E-13 2.1E-17 109.2 8.4 152 96-258 221-378 (641)
294 COG4917 EutP Ethanolamine util 99.4 1.5E-13 3.3E-18 96.5 3.2 135 26-204 3-142 (148)
295 cd01853 Toc34_like Toc34-like 99.4 4.4E-12 9.5E-17 103.3 12.1 116 24-161 31-164 (249)
296 KOG0448|consensus 99.4 1.9E-12 4.2E-17 114.6 10.5 103 89-192 201-310 (749)
297 KOG0096|consensus 99.4 4E-13 8.7E-18 101.1 5.2 150 26-203 12-164 (216)
298 KOG0459|consensus 99.4 1.6E-13 3.5E-18 114.5 3.0 148 92-257 155-317 (501)
299 KOG0466|consensus 99.4 2E-13 4.2E-18 110.3 1.8 189 23-211 37-244 (466)
300 KOG0465|consensus 99.3 1.1E-12 2.5E-17 114.5 5.8 130 23-175 38-185 (721)
301 KOG1673|consensus 99.3 5.4E-13 1.2E-17 97.2 2.9 156 24-200 20-178 (205)
302 KOG2486|consensus 99.3 6.5E-12 1.4E-16 100.5 8.8 159 23-204 135-312 (320)
303 TIGR00991 3a0901s02IAP34 GTP-b 99.3 2E-11 4.3E-16 101.1 11.3 116 23-160 37-167 (313)
304 KOG1954|consensus 99.3 2.3E-11 5E-16 100.8 11.3 138 22-160 56-225 (532)
305 KOG0464|consensus 99.3 1.1E-12 2.3E-17 110.2 3.5 149 20-175 33-183 (753)
306 PF04548 AIG1: AIG1 family; I 99.3 1.9E-11 4.2E-16 97.6 10.5 114 26-161 2-131 (212)
307 PF03029 ATP_bind_1: Conserved 99.3 2.5E-12 5.3E-17 104.1 5.4 106 95-200 92-229 (238)
308 KOG0467|consensus 99.3 9.5E-12 2.1E-16 111.3 9.3 125 24-160 9-138 (887)
309 PF00735 Septin: Septin; Inte 99.3 3E-11 6.5E-16 100.0 9.2 118 25-160 5-156 (281)
310 PRK09601 GTP-binding protein Y 99.3 7.5E-11 1.6E-15 100.1 11.6 95 26-128 4-107 (364)
311 PTZ00258 GTP-binding protein; 99.2 1.2E-10 2.5E-15 100.0 12.2 96 25-128 22-126 (390)
312 TIGR00073 hypB hydrogenase acc 99.2 8.1E-12 1.8E-16 99.5 4.4 99 95-203 104-202 (207)
313 PRK10463 hydrogenase nickel in 99.2 7.1E-12 1.5E-16 103.0 3.9 186 7-203 87-284 (290)
314 TIGR00750 lao LAO/AO transport 99.2 3.3E-11 7.1E-16 101.2 7.7 107 93-206 126-236 (300)
315 cd01900 YchF YchF subfamily. 99.2 8.4E-11 1.8E-15 96.7 9.8 94 27-128 1-103 (274)
316 COG0012 Predicted GTPase, prob 99.2 1E-10 2.3E-15 97.9 10.4 98 25-129 3-109 (372)
317 KOG1143|consensus 99.2 2.5E-11 5.4E-16 100.8 6.1 138 20-160 166-317 (591)
318 KOG0090|consensus 99.2 1.5E-10 3.2E-15 89.3 9.4 111 25-161 39-160 (238)
319 TIGR00101 ureG urease accessor 99.2 6.9E-11 1.5E-15 93.3 7.0 101 94-204 92-192 (199)
320 KOG4423|consensus 99.1 3.7E-12 8E-17 95.7 -1.9 150 25-198 26-184 (229)
321 KOG0410|consensus 99.1 9.5E-11 2.1E-15 95.8 5.9 139 24-200 178-333 (410)
322 PF03308 ArgK: ArgK protein; 99.1 1E-11 2.2E-16 99.4 0.3 101 95-206 123-228 (266)
323 KOG3886|consensus 99.1 1.9E-10 4E-15 89.8 6.8 147 25-192 5-163 (295)
324 COG5019 CDC3 Septin family pro 99.1 6.6E-10 1.4E-14 92.7 10.4 146 25-186 24-199 (373)
325 KOG0469|consensus 99.1 1.7E-10 3.7E-15 99.2 7.0 150 25-181 20-185 (842)
326 COG0378 HypB Ni2+-binding GTPa 99.1 3.7E-11 8E-16 91.8 1.6 167 25-203 14-196 (202)
327 COG1703 ArgK Putative periplas 99.0 5.9E-10 1.3E-14 90.6 7.1 103 95-206 145-252 (323)
328 TIGR00993 3a0901s04IAP86 chlor 99.0 2E-09 4.4E-14 96.5 10.6 114 25-160 119-250 (763)
329 KOG2655|consensus 99.0 2.6E-09 5.6E-14 89.8 9.6 123 25-160 22-172 (366)
330 KOG1547|consensus 99.0 3.1E-09 6.7E-14 83.5 8.3 141 25-185 47-220 (336)
331 KOG1486|consensus 98.9 1.5E-09 3.2E-14 85.9 4.1 83 25-130 63-152 (364)
332 cd01859 MJ1464 MJ1464. This f 98.9 1.8E-09 3.8E-14 82.1 4.4 91 107-204 2-92 (156)
333 TIGR00157 ribosome small subun 98.9 3.1E-09 6.7E-14 86.6 6.0 102 105-212 24-127 (245)
334 COG5192 BMS1 GTP-binding prote 98.8 1.2E-08 2.7E-13 89.1 8.3 108 25-161 70-178 (1077)
335 cd01858 NGP_1 NGP-1. Autoanti 98.8 5.1E-09 1.1E-13 79.6 4.3 85 113-203 4-90 (157)
336 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.4E-08 3E-13 77.2 4.8 25 25-49 103-127 (157)
337 cd00066 G-alpha G protein alph 98.7 3.2E-08 7E-13 83.7 7.0 65 95-159 162-241 (317)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 4.3E-08 9.3E-13 73.1 6.8 78 111-195 5-84 (141)
339 cd01849 YlqF_related_GTPase Yl 98.7 2E-08 4.3E-13 76.2 4.4 79 119-203 1-80 (155)
340 cd01855 YqeH YqeH. YqeH is an 98.7 1.5E-08 3.3E-13 79.5 3.8 98 104-205 21-122 (190)
341 KOG3905|consensus 98.7 1.4E-07 3.1E-12 77.5 9.1 59 145-203 221-285 (473)
342 smart00275 G_alpha G protein a 98.7 1.1E-07 2.3E-12 81.3 8.8 64 96-159 186-264 (342)
343 TIGR01425 SRP54_euk signal rec 98.7 8.6E-08 1.9E-12 83.4 8.1 64 94-159 183-252 (429)
344 PRK10416 signal recognition pa 98.7 1.6E-07 3.5E-12 79.3 9.4 92 94-198 197-300 (318)
345 cd04178 Nucleostemin_like Nucl 98.7 4E-08 8.6E-13 75.7 5.3 25 25-49 118-142 (172)
346 PRK00098 GTPase RsgA; Reviewed 98.6 3.8E-08 8.3E-13 82.6 5.4 86 115-206 78-165 (298)
347 cd03112 CobW_like The function 98.6 2.9E-07 6.3E-12 70.0 9.3 61 95-158 88-158 (158)
348 TIGR00064 ftsY signal recognit 98.6 2.6E-07 5.7E-12 76.4 9.4 92 94-198 155-258 (272)
349 PF03193 DUF258: Protein of un 98.6 1.9E-08 4.1E-13 75.9 2.3 27 22-48 33-59 (161)
350 cd01855 YqeH YqeH. YqeH is an 98.6 6.1E-08 1.3E-12 76.1 4.3 25 25-49 128-152 (190)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 7.4E-08 1.6E-12 71.9 4.4 24 26-49 85-108 (141)
352 PRK14974 cell division protein 98.6 3.3E-07 7.2E-12 77.7 8.8 92 94-198 223-320 (336)
353 PF05783 DLIC: Dynein light in 98.5 2.7E-07 5.8E-12 81.5 8.0 158 24-203 25-259 (472)
354 PF00448 SRP54: SRP54-type pro 98.5 1.9E-07 4.1E-12 73.4 6.4 63 95-160 85-154 (196)
355 PRK12289 GTPase RsgA; Reviewed 98.5 1.7E-07 3.7E-12 80.1 6.2 89 112-207 84-174 (352)
356 cd01851 GBP Guanylate-binding 98.5 5.9E-07 1.3E-11 72.3 8.1 24 24-47 7-30 (224)
357 cd01856 YlqF YlqF. Proteins o 98.5 8.9E-08 1.9E-12 73.9 3.0 94 102-204 3-97 (171)
358 cd03114 ArgK-like The function 98.5 1E-06 2.2E-11 66.2 8.5 57 94-157 92-148 (148)
359 TIGR03596 GTPase_YlqF ribosome 98.5 1.3E-07 2.7E-12 78.7 3.8 92 102-202 5-97 (276)
360 cd01849 YlqF_related_GTPase Yl 98.5 2.4E-07 5.3E-12 70.2 5.1 26 24-49 100-125 (155)
361 KOG3887|consensus 98.5 7.8E-07 1.7E-11 70.3 7.7 135 20-177 24-167 (347)
362 TIGR03597 GTPase_YqeH ribosome 98.5 8.1E-08 1.8E-12 82.7 2.5 116 25-160 155-280 (360)
363 TIGR00092 GTP-binding protein 98.4 4.9E-07 1.1E-11 77.1 6.9 95 26-128 4-108 (368)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.4 3.2E-07 6.9E-12 76.7 5.5 90 115-211 76-167 (287)
365 PRK14722 flhF flagellar biosyn 98.4 5.5E-07 1.2E-11 77.2 7.0 25 24-48 137-161 (374)
366 COG3640 CooC CO dehydrogenase 98.4 5.6E-07 1.2E-11 71.0 6.5 63 94-159 134-198 (255)
367 COG1161 Predicted GTPases [Gen 98.4 2.9E-07 6.3E-12 78.0 5.2 25 25-49 133-157 (322)
368 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.7E-07 5.9E-12 77.1 4.6 26 24-49 121-146 (287)
369 TIGR03596 GTPase_YlqF ribosome 98.4 3.3E-07 7.2E-12 76.2 5.0 26 24-49 118-143 (276)
370 KOG1487|consensus 98.4 1.7E-07 3.7E-12 74.7 2.8 82 26-130 61-149 (358)
371 TIGR03597 GTPase_YqeH ribosome 98.4 3.5E-07 7.6E-12 78.8 4.4 97 104-204 50-149 (360)
372 PRK12288 GTPase RsgA; Reviewed 98.4 3.8E-07 8.2E-12 77.9 4.5 25 25-49 206-230 (347)
373 cd01856 YlqF YlqF. Proteins o 98.4 5E-07 1.1E-11 69.7 4.6 25 25-49 116-140 (171)
374 smart00010 small_GTPase Small 98.4 7.8E-07 1.7E-11 64.3 5.2 110 26-196 2-114 (124)
375 PRK11889 flhF flagellar biosyn 98.4 1.8E-06 4E-11 73.9 8.1 64 95-160 322-391 (436)
376 PF02492 cobW: CobW/HypB/UreG, 98.3 9.8E-07 2.1E-11 68.5 5.4 64 94-160 85-155 (178)
377 cd03115 SRP The signal recogni 98.3 5.4E-06 1.2E-10 64.0 9.2 63 95-160 84-153 (173)
378 KOG1491|consensus 98.3 1.3E-06 2.9E-11 72.3 5.9 97 25-129 21-126 (391)
379 TIGR00157 ribosome small subun 98.3 6.5E-07 1.4E-11 73.0 4.1 26 24-49 120-145 (245)
380 KOG0082|consensus 98.3 1.6E-06 3.6E-11 73.1 6.5 69 91-159 192-275 (354)
381 PRK12289 GTPase RsgA; Reviewed 98.3 7.9E-07 1.7E-11 76.0 4.7 25 25-49 173-197 (352)
382 PRK09563 rbgA GTPase YlqF; Rev 98.3 4.2E-07 9.1E-12 76.0 2.8 92 101-201 7-99 (287)
383 PRK00771 signal recognition pa 98.3 3.7E-06 8E-11 73.8 8.6 62 95-159 177-245 (437)
384 COG1162 Predicted GTPases [Gen 98.3 7.7E-07 1.7E-11 73.3 4.0 26 22-47 162-187 (301)
385 PRK01889 GTPase RsgA; Reviewed 98.2 1.7E-06 3.8E-11 74.3 5.6 83 115-204 110-193 (356)
386 cd01859 MJ1464 MJ1464. This f 98.2 1.7E-06 3.6E-11 65.6 4.9 24 25-48 102-125 (156)
387 COG1419 FlhF Flagellar GTP-bin 98.2 3.2E-06 6.9E-11 72.3 6.9 132 23-160 202-352 (407)
388 TIGR02475 CobW cobalamin biosy 98.2 2.9E-05 6.2E-10 66.4 12.5 25 23-47 3-27 (341)
389 PRK13796 GTPase YqeH; Provisio 98.2 1.3E-06 2.8E-11 75.4 4.3 24 25-48 161-184 (365)
390 KOG3859|consensus 98.2 3.9E-06 8.4E-11 67.8 6.6 116 24-159 42-189 (406)
391 PRK11537 putative GTP-binding 98.2 9.4E-06 2E-10 68.7 9.2 78 94-179 91-178 (318)
392 PRK12288 GTPase RsgA; Reviewed 98.2 2.1E-06 4.5E-11 73.4 5.2 92 115-210 118-210 (347)
393 PRK12727 flagellar biosynthesi 98.2 4.9E-06 1.1E-10 74.0 7.2 24 24-47 350-373 (559)
394 COG0523 Putative GTPases (G3E 98.2 2.4E-05 5.3E-10 66.0 10.7 155 25-190 2-184 (323)
395 TIGR03348 VI_IcmF type VI secr 98.2 6.5E-06 1.4E-10 81.1 8.3 116 24-160 111-257 (1169)
396 PRK14721 flhF flagellar biosyn 98.1 1.4E-05 3E-10 69.8 8.7 24 24-47 191-214 (420)
397 cd01854 YjeQ_engC YjeQ/EngC. 98.1 3.8E-06 8.3E-11 70.2 5.0 26 24-49 161-186 (287)
398 PRK12726 flagellar biosynthesi 98.1 5.7E-06 1.2E-10 70.7 5.9 24 24-47 206-229 (407)
399 PRK00098 GTPase RsgA; Reviewed 98.1 3.8E-06 8.3E-11 70.6 4.9 26 24-49 164-189 (298)
400 PRK10867 signal recognition pa 98.1 1.3E-05 2.8E-10 70.3 7.7 64 94-159 184-253 (433)
401 PRK12723 flagellar biosynthesi 98.0 3.2E-05 7E-10 67.0 9.5 26 22-47 172-197 (388)
402 TIGR00959 ffh signal recogniti 98.0 1.6E-05 3.4E-10 69.7 7.6 63 95-159 184-252 (428)
403 PRK05703 flhF flagellar biosyn 98.0 2.9E-05 6.4E-10 68.3 9.2 65 94-160 300-371 (424)
404 PRK12724 flagellar biosynthesi 98.0 1.5E-05 3.2E-10 69.1 7.0 25 23-47 222-246 (432)
405 KOG1707|consensus 98.0 3.1E-05 6.7E-10 68.6 8.7 117 21-160 422-540 (625)
406 KOG0447|consensus 98.0 7E-05 1.5E-09 66.0 10.6 78 96-174 414-506 (980)
407 KOG1424|consensus 98.0 6.4E-06 1.4E-10 71.8 3.8 25 25-49 315-339 (562)
408 PF09547 Spore_IV_A: Stage IV 98.0 8.7E-05 1.9E-09 63.8 10.4 63 135-204 169-233 (492)
409 KOG1534|consensus 98.0 1.4E-05 3.1E-10 62.0 5.0 65 95-160 99-178 (273)
410 COG0552 FtsY Signal recognitio 97.9 4E-05 8.6E-10 63.9 7.8 28 22-49 137-164 (340)
411 PRK14723 flhF flagellar biosyn 97.9 2.4E-05 5.3E-10 72.6 7.3 25 24-48 185-209 (767)
412 PRK06995 flhF flagellar biosyn 97.9 3.2E-05 7E-10 68.6 7.7 25 24-48 256-280 (484)
413 PRK13796 GTPase YqeH; Provisio 97.9 1.4E-05 3.1E-10 69.0 5.1 94 106-204 58-155 (365)
414 PRK06731 flhF flagellar biosyn 97.9 4.8E-05 1E-09 62.7 7.5 64 95-160 156-225 (270)
415 COG1618 Predicted nucleotide k 97.9 8.7E-05 1.9E-09 55.5 7.8 21 27-47 8-28 (179)
416 PF05621 TniB: Bacterial TniB 97.9 6.6E-05 1.4E-09 62.2 7.9 40 9-48 46-85 (302)
417 KOG2485|consensus 97.8 1.5E-05 3.3E-10 65.5 3.7 25 25-49 144-168 (335)
418 cd03111 CpaE_like This protein 97.8 0.00011 2.4E-09 51.8 7.5 58 96-155 45-106 (106)
419 COG3523 IcmF Type VI protein s 97.8 6.1E-05 1.3E-09 72.9 7.5 65 96-160 176-270 (1188)
420 cd02036 MinD Bacterial cell di 97.8 0.00027 5.9E-09 54.5 10.0 63 95-159 64-127 (179)
421 PRK13695 putative NTPase; Prov 97.8 4.9E-05 1.1E-09 58.7 5.7 42 114-157 93-137 (174)
422 cd02038 FleN-like FleN is a me 97.8 0.00017 3.6E-09 53.6 8.2 63 95-159 46-110 (139)
423 cd04178 Nucleostemin_like Nucl 97.7 6.8E-05 1.5E-09 57.8 5.8 55 119-179 1-57 (172)
424 KOG2423|consensus 97.7 4E-05 8.6E-10 65.0 3.6 24 26-49 309-332 (572)
425 KOG0099|consensus 97.6 0.00021 4.5E-09 57.5 6.7 66 95-160 203-283 (379)
426 KOG1533|consensus 97.6 4E-05 8.6E-10 60.6 2.4 68 94-161 97-178 (290)
427 cd03110 Fer4_NifH_child This p 97.6 0.00051 1.1E-08 53.2 8.7 64 94-159 93-156 (179)
428 KOG2484|consensus 97.5 0.00021 4.5E-09 60.8 6.2 81 105-191 134-216 (435)
429 PF06858 NOG1: Nucleolar GTP-b 97.5 0.0004 8.8E-09 42.5 5.8 44 114-157 10-58 (58)
430 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00061 1.3E-08 46.5 7.7 71 27-132 2-73 (99)
431 KOG0780|consensus 97.5 0.00037 8E-09 59.2 7.5 25 22-46 99-123 (483)
432 COG0541 Ffh Signal recognition 97.5 0.00059 1.3E-08 59.0 8.8 62 95-159 184-252 (451)
433 cd02037 MRP-like MRP (Multiple 97.5 0.00052 1.1E-08 52.6 7.9 63 95-159 69-134 (169)
434 KOG1144|consensus 97.5 0.00027 5.9E-09 64.4 6.4 71 189-259 994-1064(1064)
435 KOG2743|consensus 97.4 0.00075 1.6E-08 55.5 8.0 29 20-48 53-81 (391)
436 KOG2484|consensus 97.4 0.00013 2.9E-09 62.0 3.5 26 24-49 252-277 (435)
437 cd02042 ParA ParA and ParB of 97.3 0.0011 2.3E-08 46.4 6.9 71 27-129 2-73 (104)
438 PHA02518 ParA-like protein; Pr 97.3 0.0028 6.2E-08 50.2 10.2 62 95-158 78-145 (211)
439 PRK01889 GTPase RsgA; Reviewed 97.3 0.00028 6E-09 60.9 4.0 24 26-49 197-220 (356)
440 COG1161 Predicted GTPases [Gen 97.2 0.00072 1.6E-08 57.5 6.1 96 97-200 13-109 (322)
441 KOG4181|consensus 97.2 0.0039 8.4E-08 52.4 9.8 23 26-48 190-212 (491)
442 PF13555 AAA_29: P-loop contai 97.2 0.00031 6.8E-09 44.0 2.6 21 26-46 25-45 (62)
443 COG1116 TauB ABC-type nitrate/ 97.2 0.00025 5.5E-09 56.9 2.4 23 26-48 31-53 (248)
444 PF13207 AAA_17: AAA domain; P 97.1 0.00035 7.7E-09 50.3 2.9 22 26-47 1-22 (121)
445 COG0194 Gmk Guanylate kinase [ 97.1 0.00058 1.2E-08 52.5 4.0 37 25-68 5-41 (191)
446 TIGR03499 FlhF flagellar biosy 97.1 0.00033 7.1E-09 58.4 2.4 25 24-48 194-218 (282)
447 COG1162 Predicted GTPases [Gen 97.1 0.0011 2.4E-08 54.9 5.3 93 115-213 77-172 (301)
448 KOG0085|consensus 97.1 0.00048 1E-08 54.5 3.0 71 90-160 195-280 (359)
449 COG1136 SalX ABC-type antimicr 97.0 0.00039 8.5E-09 55.5 2.5 23 26-48 33-55 (226)
450 cd02032 Bchl_like This family 97.0 0.0045 9.9E-08 51.2 8.8 64 94-158 116-184 (267)
451 PF00005 ABC_tran: ABC transpo 97.0 0.00053 1.2E-08 50.5 2.9 23 26-48 13-35 (137)
452 KOG0781|consensus 97.0 0.002 4.2E-08 56.3 6.6 26 22-47 376-401 (587)
453 PRK07261 topology modulation p 97.0 0.00045 9.7E-09 53.2 2.4 21 27-47 3-23 (171)
454 PRK13849 putative crown gall t 97.0 0.0033 7.1E-08 50.9 7.5 61 95-157 85-151 (231)
455 KOG0052|consensus 97.0 0.00064 1.4E-08 57.9 3.3 66 96-161 84-157 (391)
456 COG0563 Adk Adenylate kinase a 97.0 0.00052 1.1E-08 53.1 2.5 21 27-47 3-23 (178)
457 PRK08233 hypothetical protein; 97.0 0.00059 1.3E-08 52.8 2.8 26 22-47 1-26 (182)
458 COG3840 ThiQ ABC-type thiamine 97.0 0.00056 1.2E-08 52.4 2.5 23 26-48 27-49 (231)
459 PRK10751 molybdopterin-guanine 96.9 0.00069 1.5E-08 52.0 2.7 26 22-47 4-29 (173)
460 KOG0446|consensus 96.9 0.00046 9.9E-09 63.8 1.9 66 95-160 133-213 (657)
461 cd02019 NK Nucleoside/nucleoti 96.9 0.00078 1.7E-08 43.5 2.4 21 27-47 2-22 (69)
462 PRK08118 topology modulation p 96.8 0.00082 1.8E-08 51.5 2.6 22 26-47 3-24 (167)
463 KOG3347|consensus 96.8 0.00078 1.7E-08 49.7 2.2 24 22-45 5-28 (176)
464 cd02117 NifH_like This family 96.8 0.0075 1.6E-07 48.1 8.1 64 94-158 117-187 (212)
465 PRK14530 adenylate kinase; Pro 96.8 0.0009 1.9E-08 53.5 2.8 25 23-47 2-26 (215)
466 COG1763 MobB Molybdopterin-gua 96.8 0.004 8.6E-08 47.2 5.9 25 25-49 3-27 (161)
467 PF13671 AAA_33: AAA domain; P 96.8 0.001 2.3E-08 49.2 2.7 21 27-47 2-22 (143)
468 PRK14737 gmk guanylate kinase; 96.8 0.0021 4.6E-08 50.1 4.4 24 24-47 4-27 (186)
469 PF03205 MobB: Molybdopterin g 96.8 0.0012 2.5E-08 49.1 2.8 25 25-49 1-25 (140)
470 PF00503 G-alpha: G-protein al 96.7 0.0032 6.9E-08 55.1 5.9 65 95-159 237-316 (389)
471 COG3839 MalK ABC-type sugar tr 96.7 0.00092 2E-08 56.7 2.4 23 26-48 31-53 (338)
472 KOG0705|consensus 96.7 0.00096 2.1E-08 59.0 2.5 150 18-200 27-181 (749)
473 PF07015 VirC1: VirC1 protein; 96.7 0.01 2.3E-07 47.4 8.1 63 95-159 85-153 (231)
474 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0011 2.4E-08 51.3 2.4 23 26-48 27-49 (177)
475 PRK10078 ribose 1,5-bisphospho 96.7 0.0012 2.7E-08 51.5 2.7 22 26-47 4-25 (186)
476 COG3638 ABC-type phosphate/pho 96.7 0.0013 2.7E-08 52.5 2.6 21 26-46 32-52 (258)
477 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0013 2.8E-08 46.2 2.4 20 26-45 17-36 (107)
478 PLN02200 adenylate kinase fami 96.7 0.0016 3.5E-08 52.7 3.3 38 9-46 28-65 (234)
479 KOG1424|consensus 96.7 0.0031 6.8E-08 55.5 5.1 72 114-192 171-244 (562)
480 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0013 2.9E-08 52.3 2.7 23 26-48 29-51 (211)
481 PF13521 AAA_28: AAA domain; P 96.6 0.00099 2.2E-08 50.7 1.8 22 26-47 1-22 (163)
482 cd01130 VirB11-like_ATPase Typ 96.6 0.0014 3E-08 51.2 2.6 23 25-47 26-48 (186)
483 TIGR01166 cbiO cobalt transpor 96.6 0.0014 3.1E-08 51.2 2.6 23 26-48 20-42 (190)
484 COG1126 GlnQ ABC-type polar am 96.6 0.0015 3.3E-08 51.4 2.7 23 25-47 29-51 (240)
485 cd03261 ABC_Org_Solvent_Resist 96.6 0.0014 3.1E-08 53.1 2.7 23 26-48 28-50 (235)
486 PRK05480 uridine/cytidine kina 96.6 0.0015 3.2E-08 52.0 2.7 25 23-47 5-29 (209)
487 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0015 3.2E-08 52.3 2.7 23 26-48 32-54 (218)
488 cd03265 ABC_DrrA DrrA is the A 96.6 0.0015 3.2E-08 52.4 2.7 23 26-48 28-50 (220)
489 cd01120 RecA-like_NTPases RecA 96.6 0.0039 8.5E-08 46.9 4.9 23 27-49 2-24 (165)
490 TIGR00960 3a0501s02 Type II (G 96.6 0.0015 3.2E-08 52.3 2.6 24 25-48 30-53 (216)
491 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0016 3.5E-08 50.7 2.8 23 24-46 3-25 (188)
492 PF13238 AAA_18: AAA domain; P 96.6 0.0016 3.5E-08 47.1 2.6 21 27-47 1-21 (129)
493 cd00071 GMPK Guanosine monopho 96.6 0.0015 3.2E-08 48.3 2.4 21 27-47 2-22 (137)
494 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0016 3.4E-08 51.7 2.6 23 26-48 28-50 (205)
495 cd03264 ABC_drug_resistance_li 96.6 0.0015 3.2E-08 52.1 2.4 23 25-47 26-48 (211)
496 PTZ00301 uridine kinase; Provi 96.6 0.0017 3.7E-08 51.7 2.7 25 22-46 1-25 (210)
497 TIGR02322 phosphon_PhnN phosph 96.6 0.0016 3.5E-08 50.3 2.6 22 26-47 3-24 (179)
498 cd03238 ABC_UvrA The excision 96.6 0.0017 3.6E-08 50.3 2.6 21 26-46 23-43 (176)
499 cd03269 ABC_putative_ATPase Th 96.5 0.0017 3.7E-08 51.6 2.7 23 26-48 28-50 (210)
500 cd03259 ABC_Carb_Solutes_like 96.5 0.0017 3.7E-08 51.7 2.7 23 26-48 28-50 (213)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=214.07 Aligned_cols=200 Identities=20% Similarity=0.319 Sum_probs=155.1
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..||++.|+++|+||+|||||+|+|+|.+. +.++..+++++....++...+.. +++|+
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~Ki------------sIvS~k~QTTR~~I~GI~t~~~~----------QiIfv 59 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKI------------SIVSPKPQTTRNRIRGIVTTDNA----------QIIFV 59 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCce------------EeecCCcchhhhheeEEEEcCCc----------eEEEE
Confidence 368899999999999999999999976664 34667778888888777654432 59999
Q ss_pred eCCC-Ccc-------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHH
Q psy6316 100 DTPG-HES-------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 100 DtpG-~~~-------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
|||| |.. +.......+..+|+++||+|+++++...+...+..++..+.|+++++||+|...+. ..+.
T Consensus 60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~-----~~l~ 134 (298)
T COG1159 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK-----TVLL 134 (298)
T ss_pred eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH-----HHHH
Confidence 9999 322 33344457789999999999999999988889999999889999999999998532 2133
Q ss_pred HHHhhhhcccc-ccccccccccCcceeEEee---cCCCCCCcccccCC---cchhhHHHHhhhhhHHHHHHHHHhhcCch
Q psy6316 172 DIIKSQESSVQ-THKTVESARKGQEICIKIE---PIPGEAPKMFGRHF---DENDFLVSKISRQSIDACKDYFRDDLQKT 244 (259)
Q Consensus 172 ~~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~---~i~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 244 (259)
...+....... ..++++||++|.|++.++. ..+++.+++|+..+ .+++|+++|++||++ +.....++
T Consensus 135 ~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~------~~~l~eEl 208 (298)
T COG1159 135 KLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKL------LLLLREEL 208 (298)
T ss_pred HHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHH------HHhccccc
Confidence 33333333332 3778999999999998654 44788999998877 599999999999999 77777777
Q ss_pred hhHHHHHH
Q psy6316 245 DWQLMVDL 252 (259)
Q Consensus 245 ~~~~~~~i 252 (259)
++...+.|
T Consensus 209 Phsv~VeI 216 (298)
T COG1159 209 PHSVAVEI 216 (298)
T ss_pred CceEEEEE
Confidence 77654433
No 2
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=1.7e-26 Score=191.09 Aligned_cols=189 Identities=21% Similarity=0.292 Sum_probs=128.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
.|+++|++|||||||+|+|++.++. +.... +.+++....++... ...++.||||||+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~------~vs~~------~~TTr~~i~~i~~~----------~~~qii~vDTPG~~ 59 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS------ITSPK------AQTTRNRISGIHTT----------GASQIIFIDTPGFH 59 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe------ecCCC------CCcccCcEEEEEEc----------CCcEEEEEECcCCC
Confidence 5999999999999999999987652 11111 11111111111111 11139999999954
Q ss_pred ch--------HHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 106 SF--------SNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 106 ~~--------~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
.. ......++..+|++++|+|+++..... ..++..+...+.|+++|+||+|+.. .......+..+
T Consensus 60 ~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~~~~~~~~~ 132 (270)
T TIGR00436 60 EKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDKLLPLIDKY 132 (270)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHHHHHHHHHH
Confidence 32 122345678999999999998765543 4566677778899999999999862 23333334444
Q ss_pred hccccc-cccccccccCcceeEEeecC---CCCCCcccccCC---cchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHH
Q psy6316 178 ESSVQT-HKTVESARKGQEICIKIEPI---PGEAPKMFGRHF---DENDFLVSKISRQSIDACKDYFRDDLQKTDWQLM 249 (259)
Q Consensus 178 ~~~~~~-~~i~~Sa~~g~gv~~~l~~i---~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~ 249 (259)
....++ +++++||++|.|+++++..+ +.+.+++|+..+ .+.++.++|++||++ +.....++++.+.
T Consensus 133 ~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~------~~~~~~e~p~~~~ 205 (270)
T TIGR00436 133 AILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKI------IRYTKEEIPHSVR 205 (270)
T ss_pred HhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------HHhcccccCceEE
Confidence 333333 67899999999999865444 667777777665 478999999999999 7767777666544
No 3
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=7.2e-26 Score=192.41 Aligned_cols=194 Identities=20% Similarity=0.306 Sum_probs=132.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|++|||||||+|+|++.++.. .+.... +++....++.. ....++.|||||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~i-----vs~k~~-------tTr~~~~~~~~----------~~~~qi~~~DTp 108 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSI-----VTPKVQ-------TTRSIITGIIT----------LKDTQVILYDTP 108 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceee-----ccCCCC-------CccCcEEEEEE----------eCCeEEEEEECC
Confidence 34579999999999999999999876531 111111 11111111110 111139999999
Q ss_pred CCcc-hHH-------HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 103 GHES-FSN-------LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 103 G~~~-~~~-------~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
|+.. +.. ....++..+|++++|+|+++++...+..++..++..+.|.++|+||+|+... ...+..+.+
T Consensus 109 G~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~----~~~~~~~~l 184 (339)
T PRK15494 109 GIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK----YLNDIKAFL 184 (339)
T ss_pred CcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc----cHHHHHHHH
Confidence 9632 221 1223478999999999998877766666777788788899999999998631 122222222
Q ss_pred hhhhccccccccccccccCcceeEEeecC---CCCCCcccccCC---cchhhHHHHhhhhhHHHHHHHHHhhcCchhhHH
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPI---PGEAPKMFGRHF---DENDFLVSKISRQSIDACKDYFRDDLQKTDWQL 248 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i---~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 248 (259)
.... ....++++||++|.|+++++..+ ..+.+++|+... .+.+++++|++||++ +.....++++..
T Consensus 185 ~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~------~~~~~~EiP~~~ 256 (339)
T PRK15494 185 TENH--PDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQL------FLNLQKELPYKL 256 (339)
T ss_pred HhcC--CCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------HhhCCcccCceE
Confidence 2211 12567899999999999866554 667888888777 488999999999999 888888877765
Q ss_pred HH
Q psy6316 249 MV 250 (259)
Q Consensus 249 ~~ 250 (259)
.+
T Consensus 257 ~v 258 (339)
T PRK15494 257 TV 258 (339)
T ss_pred EE
Confidence 43
No 4
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.2e-26 Score=190.32 Aligned_cols=211 Identities=23% Similarity=0.273 Sum_probs=147.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccC------------CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQ------------DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLE 92 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (259)
.+++|+|++++|||||+.+|+..--. ....+.-+..++.........+++...+.... ...+..
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~----~~fet~ 83 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAH----SKFETD 83 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEE----EEeecC
Confidence 46999999999999999999643100 00001111122222222222222221111000 000111
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCCCC-EEEEEecccccCcccc
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKTP-FVVALNKIDRLYNWNT 164 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~ 164 (259)
...|+|+|||||.+|.+.+...+++||++|+|+|+..+ ...++++++-..+..++. +|+++||+|... |++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-cCH
Confidence 22399999999999999999999999999999999987 677889998888888864 788999999985 887
Q ss_pred cchhhHHHHHhhhhcccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHh
Q psy6316 165 MNRRDVRDIIKSQESSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRD 239 (259)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 239 (259)
...+++...+..+.+..+ ++++|+||.+|.|+-+.- ...+||.+. -.+++|+ .+..
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s----~~~pWY~Gp--------------TLleaLd-~~~~ 223 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS----ENMPWYKGP--------------TLLEALD-QLEP 223 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC----cCCcCccCC--------------hHHHHHh-ccCC
Confidence 788888888877665554 457899999999998733 456666433 2445555 4888
Q ss_pred hcCchhhHHHHHHHHhhccC
Q psy6316 240 DLQKTDWQLMVDLKKVFQIL 259 (259)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~~ 259 (259)
+.+.++.||+++|+++|+|.
T Consensus 224 p~~~~d~Plr~pI~~v~~i~ 243 (428)
T COG5256 224 PERPLDKPLRLPIQDVYSIS 243 (428)
T ss_pred CCCCCCCCeEeEeeeEEEec
Confidence 99999999999999999874
No 5
>PRK00089 era GTPase Era; Reviewed
Probab=99.93 E-value=4.4e-25 Score=184.96 Aligned_cols=196 Identities=19% Similarity=0.290 Sum_probs=135.4
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.+|++.|+++|++|||||||+|+|++.++... ...+.+++.....+...+ ..+++|||
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~v------------s~~~~tt~~~i~~i~~~~----------~~qi~~iD 59 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIV------------SPKPQTTRHRIRGIVTED----------DAQIIFVD 59 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeec------------CCCCCcccccEEEEEEcC----------CceEEEEE
Confidence 46788999999999999999999988765211 111112222211111111 11399999
Q ss_pred CCCCcch--------HHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 101 TPGHESF--------SNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 101 tpG~~~~--------~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
|||.... .......+..+|++++|+|+++..+..+..++..+...+.|+++|+||+|+... ......
T Consensus 60 TPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-----~~~l~~ 134 (292)
T PRK00089 60 TPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-----KEELLP 134 (292)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-----HHHHHH
Confidence 9995432 223344678999999999998877777777777787778999999999999732 233344
Q ss_pred HHhhhhccc-cccccccccccCcceeEEeecC---CCCCCcccccCC---cchhhHHHHhhhhhHHHHHHHHHhhcCchh
Q psy6316 173 IIKSQESSV-QTHKTVESARKGQEICIKIEPI---PGEAPKMFGRHF---DENDFLVSKISRQSIDACKDYFRDDLQKTD 245 (259)
Q Consensus 173 ~~~~~~~~~-~~~~i~~Sa~~g~gv~~~l~~i---~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 245 (259)
.++.+.... ..+++++||++|.|++.++..+ ..+.+++++... .+.++++.|++||++ +.....+++
T Consensus 135 ~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~------~~~l~~e~p 208 (292)
T PRK00089 135 LLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKL------LRLLGDELP 208 (292)
T ss_pred HHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------HhhCCccCC
Confidence 444444333 3567899999999999865544 455667777654 478999999999988 777777666
Q ss_pred hHHH
Q psy6316 246 WQLM 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+...
T Consensus 209 ~~~~ 212 (292)
T PRK00089 209 YSVA 212 (292)
T ss_pred ceEE
Confidence 6543
No 6
>KOG0084|consensus
Probab=99.92 E-value=3e-25 Score=167.33 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=124.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||+|+.++.+..+.+.+..+++.++...+...+....+ +++|||+||
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iK---------------------lQIWDTAGQ 68 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIK---------------------LQIWDTAGQ 68 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEE---------------------EEeeecccc
Confidence 56999999999999999999999999988889998887766665544322 999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC---CCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++|+....++++.|+++|+|+|.++..++.... |+..+... ++|.++|+||+|+... +....+..+.+...
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~-----~~v~~~~a~~fa~~ 143 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK-----RVVSTEEAQEFADE 143 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh-----eecCHHHHHHHHHh
Confidence 999999999999999999999999987777654 66666653 5799999999999753 22223334566666
Q ss_pred cccc-ccccccccCcceeEEeecC
Q psy6316 181 VQTH-KTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~-~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.+ ++++||+++.+++..+..+
T Consensus 144 ~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 144 LGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred cCCcceeecccCCccCHHHHHHHH
Confidence 6777 7789999999998865544
No 7
>KOG0092|consensus
Probab=99.91 E-value=3.1e-25 Score=166.65 Aligned_cols=161 Identities=20% Similarity=0.204 Sum_probs=128.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|..++|||||+-++...++.+...++++..+-..+....... + .+.||||+|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~-----i----------------kfeIWDTAG 63 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNT-----I----------------KFEIWDTAG 63 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcE-----E----------------EEEEEEcCC
Confidence 4569999999999999999999999988877777766655555443321 1 189999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhCCCC---EEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSKKTP---FVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~~~p---iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+++|..+...|+++|+++|+|+|+++..+... +.|++.+.+..-| +.+|+||+|+.. .++...+..+.+..
T Consensus 64 QERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-----~R~V~~~ea~~yAe 138 (200)
T KOG0092|consen 64 QERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-----RREVEFEEAQAYAE 138 (200)
T ss_pred cccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-----cccccHHHHHHHHH
Confidence 99999999999999999999999998777665 4577888775444 456999999984 24455566777777
Q ss_pred cccccccccccccCcceeEEeecCCCCCCcc
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPGEAPKM 210 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~ 210 (259)
..+..++++||++|.|+++++..+....+..
T Consensus 139 ~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 139 SQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred hcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 7889999999999999999887776665554
No 8
>KOG0094|consensus
Probab=99.91 E-value=1.5e-24 Score=162.99 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=128.2
Q ss_pred CcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 18 DENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 18 ~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
.+..+|..+|+|+|..++||||||+++....+...+..+|+.++-..+........ .++
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~v---------------------rLQ 74 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV---------------------RLQ 74 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEE---------------------EEE
Confidence 34567778899999999999999999999999999999999888665554433211 299
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhCC----CCEEEEEecccccCcccccchhhHHH
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSKK----TPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~~----~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+|||+||++|..+...|++++.++|+|+|.++..+... ..|+.-++..+ +-+++|+||.|+... ++-...
T Consensus 75 lWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk-----rqvs~e 149 (221)
T KOG0094|consen 75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK-----RQVSIE 149 (221)
T ss_pred EEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch-----hhhhHH
Confidence 99999999999999999999999999999998877665 45777766542 346689999999842 222333
Q ss_pred HHhhhhccccccccccccccCcceeEEeecCCCCC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~ 207 (259)
.-.+....++..++.+||+.|+|+..++.++....
T Consensus 150 Eg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 150 EGERKAKELNAEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred HHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhc
Confidence 33455666678888999999999998777654333
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=3.9e-25 Score=165.72 Aligned_cols=145 Identities=22% Similarity=0.229 Sum_probs=96.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.||+|||||+|+|++.+.....+++.+ ....... +. +....+.|+|+||..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~T-------v~~~~g~-----~~-----------~~~~~~~lvDlPG~y 58 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTT-------VEKKEGI-----FK-----------LGDQQVELVDLPGIY 58 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSS-------SEEEEEE-----EE-----------ETTEEEEEEE----S
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCC-------eeeeeEE-----EE-----------ecCceEEEEECCCcc
Confidence 499999999999999999999886433222222 2111100 00 011139999999932
Q ss_pred c------hHHHHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 106 S------FSNLRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 106 ~------~~~~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
. -......++ ...|++++|+|+++ ...+..+..++.+.++|+++++||+|+.. +..+.-....+
T Consensus 59 sl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~------~~g~~id~~~L 130 (156)
T PF02421_consen 59 SLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE------RKGIEIDAEKL 130 (156)
T ss_dssp SSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH------HTTEEE-HHHH
T ss_pred cCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH------HcCCEECHHHH
Confidence 2 122233333 68999999999987 56677888999999999999999999984 22222234445
Q ss_pred hccccccccccccccCcceeEEee
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
...++++++++||++|+|++++.+
T Consensus 131 s~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 131 SERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred HHHhCCCEEEEEeCCCcCHHHHHh
Confidence 555689999999999999987544
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.91 E-value=3.3e-24 Score=169.52 Aligned_cols=153 Identities=17% Similarity=0.215 Sum_probs=110.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
.|+++|..|+|||||++++....+...+..+++..+......... ..+ .+.+|||+|++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~-----~~v----------------~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRG-----KKI----------------RLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECC-----EEE----------------EEEEEeCCCch
Confidence 489999999999999999999888776666665444322222111 011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc-
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS- 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~- 180 (259)
.|..++..+++.+|++|+|+|+++..+..... |+..+.. .+.|+++|+||+|+... ..... ...+.+...
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~-~~v~~----~~~~~~a~~~ 135 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD-REISR----QQGEKFAQQI 135 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc-cccCH----HHHHHHHHhc
Confidence 99999999999999999999999877766654 4444443 35899999999998632 11111 222233323
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.++.++++||++|.|+++++..+.
T Consensus 136 ~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 136 TGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred CCCEEEEecCCCCCCHHHHHHHHH
Confidence 256788999999999999776664
No 11
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=5.6e-24 Score=163.00 Aligned_cols=152 Identities=28% Similarity=0.306 Sum_probs=100.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccC---CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQ---DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+|+++|++|||||||+++|.+.... ....++.+............ ...+.+||||
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~~~Dtp 59 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------------GKRLGFIDVP 59 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------------CcEEEEEECC
Confidence 5999999999999999999864321 11111111111111111000 1139999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHHHHhhhhcc-
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS- 180 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~- 180 (259)
|++++......+++.+|++++|+|++++...+..+.+..+...+. |+++++||+|+.... ......+.+......
T Consensus 60 G~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~ 136 (164)
T cd04171 60 GHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED---WLELVEEEIRELLAGT 136 (164)
T ss_pred ChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH---HHHHHHHHHHHHHHhc
Confidence 999988877888899999999999988666666665555555555 999999999987321 111222233333222
Q ss_pred --ccccccccccccCcceeEEeec
Q psy6316 181 --VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 --~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.+.+++++||++|+|+++++..
T Consensus 137 ~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (164)
T cd04171 137 FLADAPIFPVSAVTGEGIEELKEY 160 (164)
T ss_pred CcCCCcEEEEeCCCCcCHHHHHHH
Confidence 3568889999999999875543
No 12
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=4.3e-24 Score=163.61 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=104.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+......+.+............ ..+ .+.+|||||++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G~~ 60 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG-----KTI----------------LVDFWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC-----EEE----------------EEEEEeCCCch
Confidence 599999999999999999998877654433333222111111110 001 28899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
.|..++..+++.+|++++|+|+++..+..+. .++..++.. +.|+++|+||+|+... . ......+....+
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~----~----~~~~~~~~~~~~ 132 (161)
T cd04124 61 RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS----V----TQKKFNFAEKHN 132 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh----H----HHHHHHHHHHcC
Confidence 9999999999999999999999886665543 455666543 6899999999998521 1 111222233345
Q ss_pred ccccccccccCcceeEEeecC
Q psy6316 183 THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++++++||++|.|+++++..+
T Consensus 133 ~~~~~~Sa~~~~gv~~l~~~l 153 (161)
T cd04124 133 LPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred CeEEEEeCCCCCCHHHHHHHH
Confidence 788899999999998866544
No 13
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=2.3e-23 Score=164.42 Aligned_cols=165 Identities=24% Similarity=0.266 Sum_probs=101.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhc--cccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR--TNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
++|+++|++|+|||||+++|++ ..+..... ...... ...+.+........... .........+.+||||
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--~~~~~~-~~~~~e~~~g~t~~~~~------~~~~~~~~~~~l~Dtp 73 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEE--VEERVM-DSNDLERERGITILAKN------TAVTYKDTKINIVDTP 73 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCc--cccccc-ccchhHHhcccccccce------eEEEECCEEEEEEECC
Confidence 4799999999999999999986 33322210 000000 00000000000000000 0001112239999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhh---c
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE---S 179 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~---~ 179 (259)
|+++|...+..+++.+|++++|+|++++.......++..+...++|+++++||+|+.........+++...+.... .
T Consensus 74 G~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 74 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred CcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999887666666666766677899999999999864211111122222222111 2
Q ss_pred cccccccccccccCcceeE
Q psy6316 180 SVQTHKTVESARKGQEICI 198 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~ 198 (259)
..+++++++||++|.|+.+
T Consensus 154 ~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 154 QLDFPVLYASAKNGWASLN 172 (194)
T ss_pred cCccCEEEeehhccccccc
Confidence 3467889999999999865
No 14
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=1.1e-23 Score=162.21 Aligned_cols=155 Identities=51% Similarity=0.778 Sum_probs=108.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
|.|+++|.+|+|||||+++|.+..+......+.+............ .....+.+|||||+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------------------~~~~~~~iiDtpG~ 60 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV--------------------LKIPGITFIDTPGH 60 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc--------------------CCcceEEEEeCCCc
Confidence 4699999999999999999988776544332232222211111100 01113999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc-----
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES----- 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~----- 179 (259)
..+...+..++..+|++++|+|++++...+....+..+...++|+++|+||+|+.... .+.....+.....
T Consensus 61 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 136 (168)
T cd01887 61 EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN----PERVKNELSELGLQGEDE 136 (168)
T ss_pred HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc----HHHHHHHHHHhhcccccc
Confidence 9999888888999999999999988777777777778888899999999999986321 1222222222211
Q ss_pred -cccccccccccccCcceeEEeecC
Q psy6316 180 -SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 -~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...++++++||++|.|+.+++..+
T Consensus 137 ~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 137 WGGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred ccCcCcEEEeecccCCCHHHHHHHH
Confidence 123678899999999998865544
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=5.4e-24 Score=166.74 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=112.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|..|+|||||+.++....+...+..+++.++......... ..+ .+.||||||+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-----~~~----------------~l~iwDt~G~ 65 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG-----RRV----------------KLQLWDTSGQ 65 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC-----EEE----------------EEEEEeCCCc
Confidence 4599999999999999999998877655444444333222111111 011 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
+.|..++..+++.+|++|+|+|.++..+..... |+..+.. .+.|+++|+||+|+.... ... .+..+.+....
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~-~v~----~~~~~~~a~~~ 140 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR-QVA----TEQAQAYAERN 140 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc-CCC----HHHHHHHHHHc
Confidence 999999999999999999999999877766544 5555544 368999999999986321 111 22344454556
Q ss_pred cccccccccccCcceeEEeecCCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
+++++++||++|.|+++++..+.+
T Consensus 141 ~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 141 GMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHH
Confidence 788999999999999987766643
No 16
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=7.3e-25 Score=172.07 Aligned_cols=171 Identities=30% Similarity=0.329 Sum_probs=108.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec-cccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI-GATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..+|+++|+.++|||||+++|+...-............ .....+.+..+........... ........++|+|||
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~----~~~~~~~~i~~iDtP 78 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISF----EKNENNRKITLIDTP 78 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEE----EBTESSEEEEEEEES
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccc----cccccccceeecccc
Confidence 45799999999999999999986543211100000000 0000000000000000000000 001122249999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh-hhh---
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK-SQE--- 178 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~-~~~--- 178 (259)
||.+|...+...++.+|++|+|+|+.++...+..+.+..+...++|+++++||+|+... ...+..+.+. .+.
T Consensus 79 G~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 79 GHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH----HHHHHHHHHHHHHHHHT
T ss_pred cccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh----hHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999832 1222222222 221
Q ss_pred -cc--ccccccccccccCcceeEEeec
Q psy6316 179 -SS--VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 179 -~~--~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.. ..++++++||++|.|++.+++.
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~ 181 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEA 181 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHH
T ss_pred ccCccccceEEEEecCCCCCHHHHHHH
Confidence 11 1357889999999999865443
No 17
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=7.2e-24 Score=163.00 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=105.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+...+.++.+.++...+.... ...+ .+.+|||||++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~----------------~~~l~Dt~g~~ 61 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN-----DKRV----------------KLQIWDTAGQE 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CEEE----------------EEEEEECCChH
Confidence 59999999999999999999888765544444332221111110 0011 29999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+.... .++..+.. ...|+++|+||+|+..... .. ...........
T Consensus 62 ~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 136 (165)
T cd01865 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV-VS----SERGRQLADQL 136 (165)
T ss_pred HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccc-cC----HHHHHHHHHHc
Confidence 9999999999999999999999875444433 34555543 3578999999999864211 11 12222333345
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+++++++||++|.|+.++++.+
T Consensus 137 ~~~~~~~Sa~~~~gv~~l~~~l 158 (165)
T cd01865 137 GFEFFEASAKENINVKQVFERL 158 (165)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 6788999999999998866554
No 18
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=2.1e-23 Score=162.50 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=109.3
Q ss_pred hhhhhhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCC
Q psy6316 3 AVFNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82 (259)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
++|.|++.++++.|... .++|+++|.+|+|||||+|+|++..+........+.+........ +
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~ 63 (179)
T TIGR03598 1 AEFVKSAVKLKQLPPDD----GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV-------------N 63 (179)
T ss_pred CEEEeeeccHhhCCCCC----CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe-------------C
Confidence 46888888888887643 567999999999999999999887532211111111110000000 0
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCc----------chHHHHHhhcc---CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE
Q psy6316 83 GEVGGPGPLEIPGLLIIDTPGHE----------SFSNLRNRGSS---LCDIAILVVDIMHGLEPQTIESINILKSKKTPF 149 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~liDtpG~~----------~~~~~~~~~~~---~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi 149 (259)
..+.+|||||+. .+..+...+++ .+|++++|+|++++.+..+...+..+...++|+
T Consensus 64 -----------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pv 132 (179)
T TIGR03598 64 -----------DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPV 132 (179)
T ss_pred -----------CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCE
Confidence 129999999953 23333333443 468999999999888888888888888889999
Q ss_pred EEEEecccccCcccccchhhHHHHHhhhhccc--cccccccccccCccee
Q psy6316 150 VVALNKIDRLYNWNTMNRRDVRDIIKSQESSV--QTHKTVESARKGQEIC 197 (259)
Q Consensus 150 ivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~Sa~~g~gv~ 197 (259)
++++||+|+.... ..+...+.++...... .++++++||++|+|++
T Consensus 133 iiv~nK~D~~~~~---~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 133 LIVLTKADKLKKS---ELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEEECcccCCHH---HHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 9999999987321 1222333333333332 3578999999999974
No 19
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=1.2e-23 Score=164.23 Aligned_cols=157 Identities=11% Similarity=0.152 Sum_probs=110.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|..|+|||||++++++..+...+.++++.++......... ..+ .+.+|||+|++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~-----~~~----------------~l~iwDt~G~~ 60 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRG-----TEI----------------TFSIWDLGGQR 60 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC-----EEE----------------EEEEEeCCCch
Confidence 499999999999999999999888766666655443221121111 011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.|..++..+++.+|++++|+|+++..+..+. .++..+.. ...| ++|+||+|+................+.+....
T Consensus 61 ~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~ 139 (182)
T cd04128 61 EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM 139 (182)
T ss_pred hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc
Confidence 9999999999999999999999887665553 35555544 2345 68899999863211111122334445555566
Q ss_pred cccccccccccCcceeEEeecCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+++++++||++|.|+++++..+.
T Consensus 140 ~~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 140 KAPLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHH
Confidence 77889999999999998766553
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=9.2e-24 Score=162.53 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=105.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+..+...+..+++.++......... ..+ .+.+|||||++
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~Dt~G~~ 62 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG-----QKI----------------KLQIWDTAGQE 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC-----EEE----------------EEEEEECCCcH
Confidence 599999999999999999998877655444443333211111110 011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++|+|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ... .+...++....
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~-~~~----~~~~~~~~~~~ 137 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR-DVT----YEEAKQFADEN 137 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-CcC----HHHHHHHHHHc
Confidence 99999999999999999999998865555443 4444433 357899999999986421 111 22233334445
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+++++++||++|.|+.+.+..+
T Consensus 138 ~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 138 GLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 6788999999999998855433
No 21
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.90 E-value=8.5e-24 Score=164.80 Aligned_cols=163 Identities=16% Similarity=0.107 Sum_probs=109.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++.+..+...+.++++.++................. ......+.||||||+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~Dt~G~ 73 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLG-----------RGQRIHLQLWDTAGQ 73 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcccccccc-----------CCCEEEEEEEeCCCh
Confidence 459999999999999999999888876665555443322211111000000000 000012899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.+...+..+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.... .... +....+..
T Consensus 74 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~-~v~~----~~~~~~~~ 148 (180)
T cd04127 74 ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR-QVSE----EQAKALAD 148 (180)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC-ccCH----HHHHHHHH
Confidence 999999999999999999999998765555543 4445543 357899999999986421 1111 22344444
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 149 ~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 149 KYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 456788999999999998865443
No 22
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=1.3e-23 Score=166.83 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=107.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++|++..+...+.++++.++......... ...+ .+.+|||||++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~----~~~~----------------~l~l~Dt~G~~ 61 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP----NTVV----------------RLQLWDIAGQE 61 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC----CCEE----------------EEEEEECCCch
Confidence 599999999999999999998877666555555433222221110 0001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH-------hCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK-------SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~-------~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
.+..++..+++.+|++|+|+|+++..+..... ++..+. ..++|+++|+||+|+... .....+ .+..+
T Consensus 62 ~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~----~~~~~ 136 (201)
T cd04107 62 RFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR-LAKDGE----QMDQF 136 (201)
T ss_pred hhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc-cccCHH----HHHHH
Confidence 99999999999999999999998866655443 333332 246899999999998631 111222 23333
Q ss_pred hcccc-ccccccccccCcceeEEeecCC
Q psy6316 178 ESSVQ-THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~~-~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....+ ..++++||++|.|+++++..+.
T Consensus 137 ~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 137 CKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred HHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 34444 5788999999999998666553
No 23
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.90 E-value=1.2e-23 Score=160.76 Aligned_cols=150 Identities=21% Similarity=0.161 Sum_probs=103.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+...+.++....+. ....... ... .+.+|||||++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~-----~~~----------------~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDG-----ETC----------------LLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEE-EEEEECC-----EEE----------------EEEEEECCCCc
Confidence 5999999999999999999988775544443332211 0000000 000 17899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.+..++..+++.+|++++|+|.++..+..+.. ++..+. ..+.|+++|+||+|+... .............
T Consensus 61 ~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~ 134 (162)
T cd04138 61 EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR------TVSSRQGQDLAKS 134 (162)
T ss_pred chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------eecHHHHHHHHHH
Confidence 99999999999999999999998754444432 333333 246899999999998631 1112223333344
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++++++||++|.|+++++..+
T Consensus 135 ~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 135 YGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred hCCeEEEecCCCCCCHHHHHHHH
Confidence 56788999999999998866544
No 24
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.90 E-value=1.2e-23 Score=161.70 Aligned_cols=152 Identities=19% Similarity=0.191 Sum_probs=105.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++++..+...+.++++.++......... ..+ .+.+|||||++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~Dt~G~~ 60 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN-----KEV----------------RVNFFDLSGHP 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC-----eEE----------------EEEEEECCccH
Confidence 599999999999999999999887665555555443322222111 011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh--------CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS--------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~--------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.+..++..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+... ...... ....
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~----~~~~ 135 (168)
T cd04119 61 EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH-RAVSED----EGRL 135 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc-cccCHH----HHHH
Confidence 9999999999999999999999876444433 24444432 35789999999998631 111112 2222
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+....+++++++||++|.|+++++..+
T Consensus 136 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 136 WAESKGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred HHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 333345678899999999998866544
No 25
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=1.6e-23 Score=192.58 Aligned_cols=157 Identities=43% Similarity=0.630 Sum_probs=121.7
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..|+|+|+++|++|+|||||+++|.+..+..++.++++...+....... ...++|||
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~-----------------------~~~ItfiD 343 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN-----------------------GGKITFLD 343 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC-----------------------CEEEEEEE
Confidence 5689999999999999999999999888776665556555543322211 01299999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh---h
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS---Q 177 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~---~ 177 (259)
||||..|..++..+++.+|++|+|+|++++...++.+.+..+...++|+|+++||+|+... ..+.+...+.. .
T Consensus 344 TPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a----~~e~V~~eL~~~~~~ 419 (787)
T PRK05306 344 TPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGA----NPDRVKQELSEYGLV 419 (787)
T ss_pred CCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccccc----CHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999632 12223332222 1
Q ss_pred hccc--cccccccccccCcceeEEeecCC
Q psy6316 178 ESSV--QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~--~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+ .++++++||++|.|++.++..+.
T Consensus 420 ~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 420 PEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred HHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 1222 26788999999999998776664
No 26
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.3e-23 Score=180.95 Aligned_cols=159 Identities=49% Similarity=0.733 Sum_probs=133.3
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..|+|.|.+||+.++|||||+.++.+.++..++.++++..+|....+.+... ...++|+|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~--------------------~~~itFiD 61 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIK--------------------IPGITFID 61 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCC--------------------CceEEEEc
Confidence 3578999999999999999999999999999999999999998888764220 01299999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ--- 177 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~--- 177 (259)
||||+.|..++.+..+.+|++++|+++.++..+|+.+-+..++..++|+++++||+|++.. +.......+++.
T Consensus 62 TPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~----np~~v~~el~~~gl~ 137 (509)
T COG0532 62 TPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA----NPDKVKQELQEYGLV 137 (509)
T ss_pred CCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC----CHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999843 233344434333
Q ss_pred hccc--cccccccccccCcceeEEeecC
Q psy6316 178 ESSV--QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~--~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...| ...++++||++|+|+++++..+
T Consensus 138 ~E~~gg~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 138 PEEWGGDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred HhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence 1222 3567799999999999876544
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.90 E-value=1.2e-23 Score=162.16 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=106.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++.+..+...+.++.+.+.......... ..+ .+.+|||||+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~l~D~~g~ 62 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG-----KKI----------------KLQIWDTAGQ 62 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC-----EEE----------------EEEEEeCCch
Confidence 4699999999999999999998887665544444332211111100 011 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....++ .......
T Consensus 63 ~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~----~~~~~~~ 137 (167)
T cd01867 63 ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR-VVSKEE----GEALADE 137 (167)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHH----HHHHHHH
Confidence 99999998999999999999999876555443 34444443 368999999999997421 112222 2333344
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++++++++||++|.|+++++..+
T Consensus 138 ~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 138 YGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHH
Confidence 56788999999999998866544
No 28
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.8e-24 Score=168.33 Aligned_cols=203 Identities=25% Similarity=0.267 Sum_probs=135.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccc-cCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATN-VPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..||+.+|+.++|||||..++...-...+ ......+.... .+-++.+... +..- -..++..++++.++|||
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGIT--Inta----hveyet~~rhyahVDcP 83 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGIT--INTA----HVEYETANRHYAHVDCP 83 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCce--eccc----eeEEecCCceEEeccCC
Confidence 46799999999999999999964322111 00111111111 1111111100 0000 00123445569999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||.+|.+.+.....+.|++|+|+.++++..++.++++...+..++| +++++||+|+..++. -.+-....+.++...+
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~e--llelVemEvreLLs~y 161 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEE--LLELVEMEVRELLSEY 161 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHH--HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999997 667899999995321 1122223344444444
Q ss_pred cc-----cccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhh
Q psy6316 182 QT-----HKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVF 256 (259)
Q Consensus 182 ~~-----~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 256 (259)
++ +++.-||+.-. - .+..+.+.+.|.++++++|++.|.++.++||+|+|+++|
T Consensus 162 ~f~gd~~Pii~gSal~al---------e-------------~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvf 219 (394)
T COG0050 162 GFPGDDTPIIRGSALKAL---------E-------------GDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVF 219 (394)
T ss_pred CCCCCCcceeechhhhhh---------c-------------CCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeE
Confidence 33 23333433210 0 111145667899999999999999999999999999999
Q ss_pred cc
Q psy6316 257 QI 258 (259)
Q Consensus 257 ~~ 258 (259)
+|
T Consensus 220 sI 221 (394)
T COG0050 220 SI 221 (394)
T ss_pred EE
Confidence 98
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.90 E-value=1.5e-23 Score=161.28 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=104.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++.+..+...+..+.+.++......... ..+ .+.+|||||+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~D~~G~ 61 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-----KTI----------------KLQIWDTAGQ 61 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 3599999999999999999998877554444333222111111110 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++++||+|+.... .... +....+...
T Consensus 62 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~----~~~~~~~~~ 136 (166)
T cd01869 62 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR-VVDY----SEAQEFADE 136 (166)
T ss_pred HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc-CCCH----HHHHHHHHH
Confidence 999999999999999999999998754444332 4444443 358999999999986421 1111 223333344
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++++++||++|.|+++++..+
T Consensus 137 ~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 137 LGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred cCCeEEEEECCCCcCHHHHHHHH
Confidence 56788999999999998865543
No 30
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=4.2e-23 Score=160.69 Aligned_cols=166 Identities=25% Similarity=0.311 Sum_probs=104.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCC-------CCCCccee--eccccccCccccccccccccCCCCCCCCCCCCCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQD-------GEAGGITQ--QIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPG 95 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (259)
++|+++|++|+|||||+++|++..-.. .+..+... ..+.+. ............. .....
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-~~~~~~~~~~~~~-----------~~~~~ 68 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITI-KAQTVRLNYKAKD-----------GQEYL 68 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeE-ecceEEEEEecCC-----------CCcEE
Confidence 379999999999999999998743110 00000000 001110 0000000000000 01112
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+.||||||+.++...+..+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+... ......+.+.
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~----~~~~~~~~~~ 144 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA----DPERVKQQIE 144 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC----CHHHHHHHHH
Confidence 889999999999999999999999999999999887777777666666678999999999998632 1122222232
Q ss_pred hhhccccccccccccccCcceeEEeecCCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
+........++++||++|.|+++++..+...
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 145 DVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 2222112347899999999998876665443
No 31
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=1.3e-23 Score=160.84 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=106.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+.....++++.++.......... ...+ .+.+|||||++
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---~~~~----------------~~~i~D~~G~~ 62 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS---DEDV----------------RLMLWDTAGQE 62 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC---CCEE----------------EEEEeeCCchH
Confidence 4999999999999999999988776555555544332111111000 0001 29999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
++...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ... .+....+....+
T Consensus 63 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~v~----~~~~~~~~~~~~ 137 (162)
T cd04106 63 EFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA-VIT----NEEAEALAKRLQ 137 (162)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc-CCC----HHHHHHHHHHcC
Confidence 99999999999999999999998765554433 3444433 378999999999986421 111 122333444456
Q ss_pred ccccccccccCcceeEEeecC
Q psy6316 183 THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++++++||++|.|+++++..+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 138 LPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 788999999999998765443
No 32
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.89 E-value=8.9e-24 Score=185.55 Aligned_cols=144 Identities=26% Similarity=0.369 Sum_probs=102.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCC--CCCHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH--GLEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~--~~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
.+.|||||||++|...+...+..+|++++|+|+++ +...++.+++..+...+. |+++++||+|+... .....+...
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~-~~~~~~~~~ 163 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY-DEKRYEEVK 163 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc-cHHHHHHHH
Confidence 49999999999998877788899999999999998 777777788777777776 58999999999741 111122333
Q ss_pred HHHhhhhcccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhh
Q psy6316 172 DIIKSQESSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDW 246 (259)
Q Consensus 172 ~~~~~~~~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 246 (259)
+.+..+....+ ++++++||++|.|+++... ..+|+.+ + ..+++|+. ++.+.+..+.
T Consensus 164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~----~~~wy~g------~--------~L~~~l~~-~~~~~~~~~~ 224 (425)
T PRK12317 164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE----NMPWYNG------P--------TLLEALDN-LKPPEKPTDK 224 (425)
T ss_pred HHHHHHHHhhCCCcCcceEEEeecccCCCcccccc----CCCcccH------H--------HHHHHHhc-CCCCccccCC
Confidence 34444433322 5688999999999987543 3344421 1 23333433 4556667789
Q ss_pred HHHHHHHHhhcc
Q psy6316 247 QLMVDLKKVFQI 258 (259)
Q Consensus 247 ~~~~~i~~~~~~ 258 (259)
||+|+|+++|++
T Consensus 225 p~r~~i~~~~~~ 236 (425)
T PRK12317 225 PLRIPIQDVYSI 236 (425)
T ss_pred CcEEEEEEEEee
Confidence 999999999975
No 33
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=1.5e-23 Score=189.26 Aligned_cols=149 Identities=31% Similarity=0.389 Sum_probs=109.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccc---cCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN---VQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+|+++|++|+|||||+++|.+.. +.+...++++.+.+........ ..+.|||||
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-----------------------~~v~~iDtP 58 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-----------------------YRLGFIDVP 58 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-----------------------EEEEEEECC
Confidence 59999999999999999998743 2222233444444332222111 129999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||+.|...+..++..+|++++|+|++++...++.+++..+...++| +++|+||+|+.... ..+...+.+..+....
T Consensus 59 Ghe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~---~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 59 GHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE---EIKRTEMFMKQILNSY 135 (581)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH---HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888899988888888999 99999999997421 1122233333332222
Q ss_pred ----cccccccccccCcceeEEe
Q psy6316 182 ----QTHKTVESARKGQEICIKI 200 (259)
Q Consensus 182 ----~~~~i~~Sa~~g~gv~~~l 200 (259)
+++++++||++|.|+++++
T Consensus 136 ~~~~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 136 IFLKNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred CCCCCCcEEEEeCCCCCCchhHH
Confidence 4678899999999997733
No 34
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=1.6e-23 Score=160.44 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=102.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|||||||++++....+...+.+++...+. ..... ....+ .+.||||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-----~~~~~----------------~l~i~Dt~G~ 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQIEV-----DGQQC----------------MLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEE-EEEEE-----CCEEE----------------EEEEEECCCc
Confidence 35999999999999999999987765444333321110 00000 00001 1789999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.|..++..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ... ......+..
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~----~~~~~~~~~ 134 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER-VVS----REEGQALAR 134 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-eec----HHHHHHHHH
Confidence 99999999999999999999999876554443 33444432 368999999999986421 111 112222333
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.++.+++++||++|.|+.+++..+.
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 135 QWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHH
Confidence 4457789999999999988665543
No 35
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=3.8e-23 Score=185.96 Aligned_cols=158 Identities=41% Similarity=0.605 Sum_probs=121.1
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..|+++|+++|++|+|||||+++|.+..+...+.++++..++......... ..++|||
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~----------------------~~i~~iD 141 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG----------------------KMITFLD 141 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC----------------------cEEEEEE
Confidence 457899999999999999999999988887666555665555432221100 0299999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ--- 177 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~--- 177 (259)
||||+.|..++..+++.+|++++|+|++++...++.+.+..+...++|+++++||+|+... ..+.+...+...
T Consensus 142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~ 217 (587)
T TIGR00487 142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLV 217 (587)
T ss_pred CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999998899999998888889999999999998632 123333333322
Q ss_pred hccc--cccccccccccCcceeEEeecCC
Q psy6316 178 ESSV--QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~--~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+ ..+++++||++|+|+++++..+.
T Consensus 218 ~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 218 PEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred HHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 1112 24678999999999998776553
No 36
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=3.5e-23 Score=166.16 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=110.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
+...+|+++|.+|+|||||+++++...+...+.++++.++......... ..+ .+.+|||
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~-----~~~----------------~l~i~Dt 69 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-----GKI----------------RFYCWDT 69 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC-----eEE----------------EEEEEEC
Confidence 4456699999999999999999988887666555555443222111110 011 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
||++.|..++..+++.+|++|+|+|.++..+..... |+..+.. .+.|+++|+||+|+.... ...+. + .+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~--v~~~~----~-~~~ 142 (219)
T PLN03071 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQ----V-TFH 142 (219)
T ss_pred CCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc--CCHHH----H-HHH
Confidence 999999999999999999999999999876655443 4455443 468999999999985321 11111 1 233
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+++++++||++|.|+.+.+..+.
T Consensus 143 ~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 143 RKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred HhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 34467889999999999998776654
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=2.4e-23 Score=160.88 Aligned_cols=154 Identities=14% Similarity=0.099 Sum_probs=105.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+...+.++++.++.......... .. .+.+|||||++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-----~~----------------~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV-----PF----------------SLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-----EE----------------EEEEEeCCChH
Confidence 6999999999999999999998887666555554432211111110 01 29999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhC----CCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSK----KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~----~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.|..++..+++.+|++++|+|+++..+... ..++..+.+. ..|+++|+||+|+..... ..........+...
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~---~~~~~~~~~~~~~~ 137 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ---YALMEQDAIKLAAE 137 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc---ccccHHHHHHHHHH
Confidence 999999999999999999999987544433 3355554332 256899999999863211 11112222333334
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.+++.+||++|.|+++++..+
T Consensus 138 ~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 138 MQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 45677899999999998865444
No 38
>KOG0078|consensus
Probab=99.89 E-value=1.7e-23 Score=160.14 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=125.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
-.+|+++|.+|+|||+++-++....+...+..+++.++...+...+.... .+.+|||+|
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i---------------------~lQiWDtaG 70 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKI---------------------KLQIWDTAG 70 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEE---------------------EEEEEEccc
Confidence 34599999999999999999999999888888888777666655544221 199999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
|++|..+..+|++.|+++++|+|.++..+..+.. |+..+.+ .++|.++|+||+|+.. .+..-.+.-++++.
T Consensus 71 Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-----~R~V~~e~ge~lA~ 145 (207)
T KOG0078|consen 71 QERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-----KRQVSKERGEALAR 145 (207)
T ss_pred chhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-----cccccHHHHHHHHH
Confidence 9999999999999999999999999987776644 6666655 3689999999999974 34445556677777
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+..++++||++|.|+++.+..+
T Consensus 146 e~G~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 146 EYGIKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred HhCCeEEEccccCCCCHHHHHHHH
Confidence 788999999999999998855443
No 39
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=2.4e-23 Score=160.12 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=104.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+...+.++....+... . ....... .+.+|||||++
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~-~-----~~~~~~~----------------~l~i~Dt~G~~ 60 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-I-----SCSKNIC----------------TLQITDTTGSH 60 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEE-E-----EECCEEE----------------EEEEEECCCCC
Confidence 499999999999999999998887554444333222100 0 0000011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh------CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
.+..++..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+..... .. ........
T Consensus 61 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-v~----~~~~~~~~ 135 (165)
T cd04140 61 QFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE-VS----SNEGAACA 135 (165)
T ss_pred cchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe-ec----HHHHHHHH
Confidence 9998888889999999999999886665443 34444433 4689999999999864211 11 11122233
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
..+++.++++||++|.|+++++..+.
T Consensus 136 ~~~~~~~~e~SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 136 TEWNCAFMETSAKTNHNVQELFQELL 161 (165)
T ss_pred HHhCCcEEEeecCCCCCHHHHHHHHH
Confidence 34457788999999999998776654
No 40
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.89 E-value=1.9e-23 Score=160.20 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=102.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+.....++....+. ...... ...+ .+.+|||||++
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~----------------~~~i~Dt~G~~ 61 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEID-----GQWA----------------ILDILDTAGQE 61 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEEC-----CEEE----------------EEEEEECCCCc
Confidence 4999999999999999999987764443333321110 000000 0001 28899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++..++..+++.+|++++|+|+++..+..... ++..+. ..+.|+++++||+|+..... .. ......+...
T Consensus 62 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~-~~----~~~~~~~~~~ 136 (164)
T cd04145 62 EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK-VS----REEGQELARK 136 (164)
T ss_pred chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce-ec----HHHHHHHHHH
Confidence 99999999999999999999998765444432 333332 24689999999999864211 11 1122333334
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+++++++||++|.|++++++.+.
T Consensus 137 ~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 137 LKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred cCCcEEEeeCCCCCCHHHHHHHHH
Confidence 467889999999999988765543
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=1.8e-23 Score=160.68 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=103.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++....+...+..+.+.+.......... ..+ .+.+|||||+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~D~~G~ 62 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG-----KRV----------------KLQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC-----EEE----------------EEEEEECCCh
Confidence 4699999999999999999988776554444333222211111110 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... . ........+...
T Consensus 63 ~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-~----~~~~~~~~~~~~ 137 (165)
T cd01864 63 ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR-E----VLFEEACTLAEK 137 (165)
T ss_pred HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-c----cCHHHHHHHHHH
Confidence 99999899999999999999999886555443 35554443 468999999999986421 1 111122223233
Q ss_pred cc-ccccccccccCcceeEEeecC
Q psy6316 181 VQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+ ..++++||++|.|+++++..+
T Consensus 138 ~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 138 NGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred cCCcEEEEEECCCCCCHHHHHHHH
Confidence 33 467899999999998866544
No 42
>PRK12736 elongation factor Tu; Reviewed
Probab=99.89 E-value=2.4e-23 Score=180.71 Aligned_cols=204 Identities=25% Similarity=0.249 Sum_probs=129.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++++|||||+++|++.....+........ .....+.+..+........ .+......++.||||||
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~-~~d~~~~E~~rg~T~~~~~------~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYD-SIDAAPEEKERGITINTAH------VEYETEKRHYAHVDCPG 84 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchh-hhcCCHHHHhcCccEEEEe------eEecCCCcEEEEEECCC
Confidence 3569999999999999999998532111100000000 0000000000000000000 00011222499999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
|.+|.......+..+|++++|+|++.+...++.+++..+...++| +|+++||+|+...+. ..+.+.+.+..+....
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~--~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEE--LLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHH--HHHHHHHHHHHHHHHhC
Confidence 999998888888999999999999999899999999999999999 678999999873211 1112223344433333
Q ss_pred ----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhc
Q psy6316 182 ----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 182 ----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 257 (259)
..+++++||++|.+-. ..+ ..-+.+.++.++++++.+.+..+.||+|+|+++|+
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~---------~~~-------------~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~ 220 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGD---------PKW-------------EDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFT 220 (394)
T ss_pred CCcCCccEEEeeccccccCC---------Ccc-------------hhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEe
Confidence 2478899999984210 011 11224566777777777888889999999999997
Q ss_pred c
Q psy6316 258 I 258 (259)
Q Consensus 258 ~ 258 (259)
+
T Consensus 221 ~ 221 (394)
T PRK12736 221 I 221 (394)
T ss_pred c
Confidence 5
No 43
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.89 E-value=2.3e-23 Score=159.41 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=105.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+++|.+..+.....++.+..+......... ... .+.+|||||++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~l~l~D~~G~~ 60 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG-----KRV----------------KLQIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-----EEE----------------EEEEEECcchH
Confidence 599999999999999999998877655444443322211111110 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH---hCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK---SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~---~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+..... ++..++ ..+.|+++++||+|+... .... .+....+....
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-~~~~----~~~~~~~~~~~ 135 (161)
T cd04113 61 RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ-REVT----FLEASRFAQEN 135 (161)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh-ccCC----HHHHHHHHHHc
Confidence 99998999999999999999998866555433 444433 347899999999998642 1111 22223333344
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++.++++||++|.|+.+++..+
T Consensus 136 ~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 136 GLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 5788999999999998866544
No 44
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.89 E-value=7.4e-23 Score=183.80 Aligned_cols=134 Identities=58% Similarity=0.881 Sum_probs=102.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
+|+|.|+++|++|+|||||+|+|.+..+.....++++.+++.+..+.+.......... ..-...+....+.||||
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~-----~~~~v~~~~~~l~~iDT 76 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLL-----KKFKIRLKIPGLLFIDT 76 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccc-----cccccccccCcEEEEEC
Confidence 6889999999999999999999999888766666666666655544322111000000 00000122234999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
|||+.|..++..+++.+|++++|+|++++...++.+.+..++..++|+++++||+|+..
T Consensus 77 pG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 77 PGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 99999999999999999999999999998888888888888888999999999999974
No 45
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=3e-23 Score=160.58 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=106.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++.+..+...+.++++..+.. ...... ..+ .+.||||||+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~-~~~~~~-----~~~----------------~l~i~Dt~G~ 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQ-QARIDN-----EPA----------------LLDILDTAGQ 60 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEE-EEEECC-----EEE----------------EEEEEeCCCc
Confidence 459999999999999999999888765444444322210 011000 001 1899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.+..++..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ....++ ...+..
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~-~v~~~~----~~~~a~ 135 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR-QVTTEE----GRNLAR 135 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC-ccCHHH----HHHHHH
Confidence 999999999999999999999999877766644 3333332 368999999999986321 111122 233334
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 136 ~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 136 EFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred HhCCEEEEEecCCCCCHHHHHHHH
Confidence 456888999999999998866544
No 46
>CHL00071 tufA elongation factor Tu
Probab=99.89 E-value=3.4e-23 Score=180.53 Aligned_cols=212 Identities=25% Similarity=0.248 Sum_probs=132.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccc-ccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+|+++|++++|||||+++|++..-........ .+... ....+..+........ ........++.|+||||
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~--~~~~~d~~~~e~~rg~T~~~~~------~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAK--KYDEIDSAPEEKARGITINTAH------VEYETENRHYAHVDCPG 84 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCcccccccc--ccccccCChhhhcCCEeEEccE------EEEccCCeEEEEEECCC
Confidence 459999999999999999998652210000000 00000 0000000000000000 00011223489999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
|.+|...+...+..+|++++|+|+..+...++.+++..+...++| +|+++||+|+..... ..+.+.+.+..+....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~--~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEE--LLELVELEVRELLSKYD 162 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHH--HHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999 778999999974211 1222333344443332
Q ss_pred ----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhc
Q psy6316 182 ----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 182 ----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 257 (259)
..+++++||.+|.++...-..+. .+ ... +.+-+...+++++++.+.+.++.+.||+|+|+++|+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~~~~------~~-----~~~-w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~ 230 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEALTENPKIK------RG-----ENK-WVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFS 230 (409)
T ss_pred CCCCcceEEEcchhhcccccccCcccc------cc-----CCc-hhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEE
Confidence 25778999999987653211100 00 001 111224577777777777778888999999999997
Q ss_pred c
Q psy6316 258 I 258 (259)
Q Consensus 258 ~ 258 (259)
+
T Consensus 231 ~ 231 (409)
T CHL00071 231 I 231 (409)
T ss_pred e
Confidence 4
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.89 E-value=3.2e-23 Score=159.24 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=105.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++.+..+...+.++.+.++......... ... .+.+|||||+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~D~~g~ 62 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG-----KTI----------------KAQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC-----EEE----------------EEEEEeCCCh
Confidence 4699999999999999999998877655444443322211111110 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
..+..++..+++.++++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+... .....++ ...+...
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~-~~~~~~~----~~~~~~~ 137 (165)
T cd01868 63 ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTEE----AKAFAEK 137 (165)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc-ccCCHHH----HHHHHHH
Confidence 999999999999999999999998755554433 4444443 35899999999998642 1112222 2223333
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++.++++||++|.|+++++..+
T Consensus 138 ~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 138 NGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred cCCEEEEEECCCCCCHHHHHHHH
Confidence 45778999999999998866554
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=3e-23 Score=159.29 Aligned_cols=152 Identities=15% Similarity=0.109 Sum_probs=103.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++++...+.....++++..+.. . .......+ .+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~-~-----~~~~~~~~----------------~l~i~Dt~G~ 59 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-Q-----VEVDGQQC----------------MLEILDTAGT 59 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE-E-----EEECCEEE----------------EEEEEECCCc
Confidence 359999999999999999998776654443333322110 0 00000001 1789999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.+..++..+++.+|++++|+|.++..+..... ++..+.. .+.|+++|+||+|+..... .... ....+..
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~----~~~~~~~ 134 (164)
T cd04175 60 EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV-VGKE----QGQNLAR 134 (164)
T ss_pred ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE-EcHH----HHHHHHH
Confidence 999999999999999999999998765544432 4444432 4689999999999964211 1111 1233334
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 135 QWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred HhCCEEEEeeCCCCCCHHHHHHHH
Confidence 445788999999999998866544
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.89 E-value=4.8e-23 Score=158.90 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=104.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++.+..+...+..+.+.+.......... ... .+.+|||||+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-----KQI----------------KLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 3599999999999999999998876554443333322211111110 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+......+++.+|++++|+|+++..+..... ++..++. .+.|+++|+||+|+.... ....++ .......
T Consensus 64 ~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~----~~~~~~~ 138 (168)
T cd01866 64 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR-EVSYEE----GEAFAKE 138 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHH----HHHHHHH
Confidence 999998889999999999999998755544433 4555544 368999999999987321 112222 2223334
Q ss_pred ccccccccccccCcceeEEeec
Q psy6316 181 VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.++.++++||++|.|+++++..
T Consensus 139 ~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 139 HGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred cCCEEEEEeCCCCCCHHHHHHH
Confidence 4678899999999999875543
No 50
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.89 E-value=2.8e-23 Score=159.86 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=104.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|||||||+++++...+...+.++++..+......... ..+ .+.+|||||++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~Dt~G~~ 60 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR-----GKI----------------RFNVWDTAGQE 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC-----EEE----------------EEEEEECCCCh
Confidence 599999999999999999987776554444444333211111100 011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
.+...+..++..+|++|+|+|+++..+.+... ++..+... +.|+++|+||+|+.... .... ..++.....
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~---~~~~----~~~~~~~~~ 133 (166)
T cd00877 61 KFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK---VKAK----QITFHRKKN 133 (166)
T ss_pred hhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc---CCHH----HHHHHHHcC
Confidence 98888888899999999999998866655443 44555432 69999999999986211 1111 122333446
Q ss_pred ccccccccccCcceeEEeecCC
Q psy6316 183 THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+.++++||++|.|+++++..+.
T Consensus 134 ~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 134 LQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred CEEEEEeCCCCCChHHHHHHHH
Confidence 7889999999999988665553
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.89 E-value=4e-23 Score=162.37 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=104.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||++++++..+...+.++++..+... ...+ ...+ .+.+|||||
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~-~~~~-----~~~~----------------~l~i~Dt~G 62 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQ-CVID-----EETC----------------LLDILDTAG 62 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEE-EEEC-----CEEE----------------EEEEEeCCC
Confidence 35699999999999999999998877554444333222100 0000 0001 288999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
++++..++..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... .....+ .....
T Consensus 63 ~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~-~i~~~~----~~~~~ 137 (189)
T PTZ00369 63 QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER-QVSTGE----GQELA 137 (189)
T ss_pred CccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccCHHH----HHHHH
Confidence 9999999999999999999999998865544433 3333432 368999999999986321 111111 22223
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+++++++||++|.|+.+++..+.
T Consensus 138 ~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 138 KSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred HHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 33457889999999999988665553
No 52
>KOG0098|consensus
Probab=99.89 E-value=3.5e-23 Score=154.45 Aligned_cols=153 Identities=19% Similarity=0.131 Sum_probs=124.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.++.++|..|+|||+|+.+++...+...+..+++.+++.....++...-+ +++|||+||
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IK---------------------lqiwDtaGq 65 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIK---------------------LQIWDTAGQ 65 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEE---------------------EEEEecCCc
Confidence 35999999999999999999999999999999999998887776543322 999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.|.+...++++.|-++|+|+|.+...+...+. |+..++. .+..+++++||+|+... +..-.+.-+.+++.
T Consensus 66 e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r-----R~Vs~EEGeaFA~e 140 (216)
T KOG0098|consen 66 ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR-----REVSKEEGEAFARE 140 (216)
T ss_pred HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc-----ccccHHHHHHHHHH
Confidence 999999999999999999999999887777765 4544544 35668899999999753 23334455666667
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+..+..+||+++.|+++.+...
T Consensus 141 hgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 141 HGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred cCceeehhhhhhhhhHHHHHHHH
Confidence 77888899999999999865444
No 53
>PLN03126 Elongation factor Tu; Provisional
Probab=99.89 E-value=8.7e-23 Score=179.73 Aligned_cols=213 Identities=25% Similarity=0.239 Sum_probs=131.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccc-cCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATN-VPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..+|+++|++++|||||+++|++..-.-.. .....+...+ ...+..+........ .........++|||||
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~------~~~~~~~~~i~liDtP 152 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTAT------VEYETENRHYAHVDCP 152 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEE------EEEecCCcEEEEEECC
Confidence 456999999999999999999853211000 0000000000 000000000000000 0001122249999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||.+|...+...+..+|++++|+|+..+...++.+++..+...++| +|+++||+|+...+ ...+.+...+..+....
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLELVELEVRELLSSY 230 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHH--HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 77899999997421 11233333444443332
Q ss_pred -----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhh
Q psy6316 182 -----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVF 256 (259)
Q Consensus 182 -----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 256 (259)
..+++++||.+|.++...-. ..... ...+. +-+...++++++..+.|.+..+.||+|+|+++|
T Consensus 231 g~~~~~~~~vp~Sa~~g~n~~~~~~-~~~~g----------~~~wy-~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf 298 (478)
T PLN03126 231 EFPGDDIPIISGSALLALEALMENP-NIKRG----------DNKWV-DKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVF 298 (478)
T ss_pred CCCcCcceEEEEEcccccccccccc-ccccC----------CCchh-hhHHHHHHHHHHhCCCCCCccccceeeEEEEEE
Confidence 45778999999876642100 00000 00111 112345666666555677788899999999999
Q ss_pred cc
Q psy6316 257 QI 258 (259)
Q Consensus 257 ~~ 258 (259)
++
T Consensus 299 ~v 300 (478)
T PLN03126 299 SI 300 (478)
T ss_pred Ee
Confidence 75
No 54
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.89 E-value=4.9e-23 Score=165.08 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=108.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++|.+..+...+.++++.++.......... ..+ .+.||||||++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~----~~~----------------~~~i~Dt~G~~ 61 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN----LNV----------------TLQVWDIGGQS 61 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC----CEE----------------EEEEEECCCcH
Confidence 4999999999999999999988876666555554432221111100 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC------CCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK------KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~------~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
.+..++..+++.+|++|+|+|+++..+..... ++..+... +.|+++|+||+|+.... .........+.
T Consensus 62 ~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~-----~v~~~~~~~~~ 136 (215)
T cd04109 62 IGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR-----TVKDDKHARFA 136 (215)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc-----ccCHHHHHHHH
Confidence 99999999999999999999998865555433 44444432 35789999999986321 11222233344
Q ss_pred ccccccccccccccCcceeEEeecCCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
...+++.+++||++|+|++++++.+..
T Consensus 137 ~~~~~~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 137 QANGMESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444577889999999999997766643
No 55
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.88 E-value=6.5e-23 Score=161.37 Aligned_cols=160 Identities=15% Similarity=0.115 Sum_probs=110.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|..|+|||||+.++....+...+.++++..+... ...+ ...+ .+.+||||
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~-~~~~-----~~~~----------------~l~i~Dt~ 59 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQ-TAVD-----GRTV----------------SLNLWDTA 59 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEE-EEEC-----CEEE----------------EEEEEECC
Confidence 345699999999999999999998888666655554332110 0010 0111 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCcccccc-------hhhHH
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNTMN-------RRDVR 171 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~~~-------~~~~~ 171 (259)
|++.|..++..+++.+|++|+|+|+++..+..... |...+.. .+.|+++|+||.|+........ .....
T Consensus 60 G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~ 139 (191)
T cd01875 60 GQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITP 139 (191)
T ss_pred CchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCH
Confidence 99999999999999999999999999876666653 3343432 4689999999999863211000 00011
Q ss_pred HHHhhhhcccc-ccccccccccCcceeEEeecCC
Q psy6316 172 DIIKSQESSVQ-THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 172 ~~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+..+.+....+ +.++++||++|.|+++++..+.
T Consensus 140 ~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~ 173 (191)
T cd01875 140 QQGGALAKQIHAVKYLECSALNQDGVKEVFAEAV 173 (191)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 22333444444 5788999999999998766554
No 56
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.5e-22 Score=174.33 Aligned_cols=181 Identities=17% Similarity=0.195 Sum_probs=116.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+|+|.||||||||+|+|++.+.. ...+..+|..+.. ++...+. ...++|+||||.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~-------vs~~p~TT~~p~~------Giv~~~~---------~~~i~~vDtPGi 217 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPK-------VADYPFTTLVPNL------GVVRVDD---------ERSFVVADIPGL 217 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccc-------ccCCCCCccCcEE------EEEEeCC---------CcEEEEEeCCCc
Confidence 36999999999999999999876541 2222222222211 1110000 012999999995
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCC---CCCHH-HHHHHHHHHh-----CCCCEEEEEecccccCcccccchh
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMH---GLEPQ-TIESINILKS-----KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~---~~~~~-~~~~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
.. ....+..++..+|++++|+|++. ..... ...++..+.. .++|+++|+||+|+.. ..
T Consensus 218 ~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~------~~ 291 (390)
T PRK12298 218 IEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD------EE 291 (390)
T ss_pred cccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC------hH
Confidence 32 23344467889999999999872 21222 2344555554 3589999999999863 22
Q ss_pred hHHHHHhhhhcccc--ccccccccccCcceeEEeecC---CCCCCcccccCC---cchhhHHHHhhhhhHHHH
Q psy6316 169 DVRDIIKSQESSVQ--THKTVESARKGQEICIKIEPI---PGEAPKMFGRHF---DENDFLVSKISRQSIDAC 233 (259)
Q Consensus 169 ~~~~~~~~~~~~~~--~~~i~~Sa~~g~gv~~~l~~i---~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l 233 (259)
++.+.++.+....+ ..++++||+++.|+++++..+ +.+.+++|+... .+.+++++|++||++...
T Consensus 292 el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~~~ 364 (390)
T PRK12298 292 EAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEV 364 (390)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhhcc
Confidence 33333443333323 357899999999999876555 445566666554 377899999999998633
No 57
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.88 E-value=5.9e-23 Score=157.04 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=104.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+++|.+..+...+.++.+.++.......... .+ .+.+|||||+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK-----TV----------------RLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE-----EE----------------EEEEEECCCcH
Confidence 5999999999999999999988876544444433222211111100 01 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh-C--CCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS-K--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~-~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+..++..+++.+|++++|+|+++..+..... ++..+.. . +.|+++++||+|+... ...............
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~-----~~~~~~~~~~~~~~~ 135 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK-----RQVSTEEGEKKAKEL 135 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc-----CccCHHHHHHHHHHh
Confidence 99999999999999999999998765554433 4444432 2 4899999999999522 111222233333344
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++.++++||++|.|+++++..+
T Consensus 136 ~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 136 NAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred CCEEEEEeCCCCCCHHHHHHHH
Confidence 5788899999999998866544
No 58
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=7.3e-23 Score=186.73 Aligned_cols=162 Identities=41% Similarity=0.645 Sum_probs=120.1
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.-|+++|+++|++|+|||||+++|.+..+...+.++++...+......... + ....++|||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~--------~-----------~~~kItfiD 301 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK--------D-----------ENQKIVFLD 301 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEec--------C-----------CceEEEEEE
Confidence 347889999999999999999999988776555445544443322111100 0 011399999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ--- 177 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~--- 177 (259)
||||+.|..++..+++.+|++|+|+|++++...++.+.+..+...++|+|+++||+|+... ..+.+...+...
T Consensus 302 TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~----~~e~v~~eL~~~~ll 377 (742)
T CHL00189 302 TPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA----NTERIKQQLAKYNLI 377 (742)
T ss_pred CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc----CHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998888899999988899999999999998642 123333333222
Q ss_pred hccc--cccccccccccCcceeEEeecCCC
Q psy6316 178 ESSV--QTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 178 ~~~~--~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
...+ .++++++||++|.|+++++..+..
T Consensus 378 ~e~~g~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 378 PEKWGGDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred hHhhCCCceEEEEECCCCCCHHHHHHhhhh
Confidence 1112 267889999999999987766543
No 59
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.88 E-value=1.2e-22 Score=156.69 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=100.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|....+.. ..++++... . ... ...+ .+.+|||||
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~----~---~~~--~~~~----------------~~~l~Dt~G 62 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV----E---TVT--YKNV----------------KFNVWDVGG 62 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce----E---EEE--ECCE----------------EEEEEECCC
Confidence 3569999999999999999998665431 111121111 0 000 0011 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHH-Hh---CCCCEEEEEecccccCcccccchhhHHHHHhhh-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINIL-KS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ- 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~- 177 (259)
++.+...+..+++.+|++|+|+|+++..+..+. .++..+ .. .+.|+++|+||+|+... ...+++.+.++..
T Consensus 63 ~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~ 139 (168)
T cd04149 63 QDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA---MKPHEIQEKLGLTR 139 (168)
T ss_pred CHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC---CCHHHHHHHcCCCc
Confidence 999999999999999999999999875444332 333333 22 35899999999998632 1233333333211
Q ss_pred hccccccccccccccCcceeEEeecCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.....++++++||++|.|+++.+..+.
T Consensus 140 ~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 140 IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 122345778999999999988766553
No 60
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=4e-23 Score=158.36 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=102.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++++...+.....++... .......... ... .+.||||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-----~~~----------------~l~i~Dt~G~ 59 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDS-----SPS----------------VLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 35999999999999999999988775544333221 1000110000 000 1889999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.|..++..+++.+|++++|+|+++..+..+.. ++..+.. .++|+++|+||+|+.... ..... ....+..
T Consensus 60 ~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~-~~~~~----~~~~~~~ 134 (163)
T cd04176 60 EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER-EVSSA----EGRALAE 134 (163)
T ss_pred ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC-ccCHH----HHHHHHH
Confidence 999999999999999999999998865544433 4344433 468999999999986321 11111 1222333
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++++++++||++|.|+++++..+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 135 EWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred HhCCEEEEecCCCCCCHHHHHHHH
Confidence 345678899999999998866544
No 61
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.88 E-value=7.1e-23 Score=162.21 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=107.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++.+..+...+.++++.++......... ..+ .+.||||||+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~l~D~~G~ 65 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING-----ERV----------------KLQIWDTAGQ 65 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC-----EEE----------------EEEEEeCCCc
Confidence 4599999999999999999998877554444443332221111100 000 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
+.+...+..+++.+|++++|+|+++..+..... ++..+.. ...|+++|+||+|+.... ... ......+....
T Consensus 66 ~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~-~~~----~~~~~~~~~~~ 140 (199)
T cd04110 66 ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK-VVE----TEDAYKFAGQM 140 (199)
T ss_pred hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-ccC----HHHHHHHHHHc
Confidence 999999999999999999999998865554433 4455544 357999999999986421 111 12223333344
Q ss_pred cccccccccccCcceeEEeecCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
++.++++||++|.|+.+++..+.
T Consensus 141 ~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 141 GISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred CCEEEEEECCCCcCHHHHHHHHH
Confidence 57889999999999998766553
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=4.6e-23 Score=162.16 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=104.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++|+...+...+.++++..+... ... ....+ .+.||||||++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQ-VVV-----DGQPC----------------MLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEE-EEE-----CCEEE----------------EEEEEECCCch
Confidence 389999999999999999998877554443333211100 000 00001 18899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh------CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
.|...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ..... ....+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~-~v~~~----~~~~~~ 133 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER-EVSTE----EGAALA 133 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC-ccCHH----HHHHHH
Confidence 99999999999999999999998865555433 4444432 358999999999986321 11111 223333
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...++.++++||++|.|+++++..+.
T Consensus 134 ~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 134 RRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred HHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 44467889999999999998766554
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=6.7e-23 Score=158.27 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=103.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++++..+.....++++........... ...+ .+.||||||+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------------~l~i~D~~G~ 64 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-----GHFV----------------TLQIWDTAGQ 64 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-----CeEE----------------EEEEEeCCCh
Confidence 359999999999999999999887765544444322211111110 0011 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh-------CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS-------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~-------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
+.+..++..+++.+|++++|+|+++..+..... +...+.. .+.|+++|+||+|+.. .....++ +++
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~----~~~ 138 (170)
T cd04116 65 ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE--RQVSTEE----AQA 138 (170)
T ss_pred HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc--cccCHHH----HHH
Confidence 999999999999999999999998765444433 3333321 3579999999999862 1112222 333
Q ss_pred hhcccc-ccccccccccCcceeEEeecCC
Q psy6316 177 QESSVQ-THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 177 ~~~~~~-~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+....+ ++++++||++|.|+.+++..+.
T Consensus 139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 139 WCRENGDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 333333 4678999999999988665543
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=6.7e-23 Score=161.35 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=104.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCC-CCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDG-EAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+|+++|.+|+|||||++++.+..+..+ +..+++.++......... ..+ .+.||||||+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG-----VKV----------------KLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC-----EEE----------------EEEEEeCCCc
Confidence 599999999999999999998876432 222222221111011100 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
..+...+..+++.+|++|+|+|+++..+..+.. ++..+.. .+.|+++|+||+|+... .... ......+...
T Consensus 61 ~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~-~~~~----~~~~~~l~~~ 135 (191)
T cd04112 61 ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE-RVVK----REDGERLAKE 135 (191)
T ss_pred HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc-cccC----HHHHHHHHHH
Confidence 999988889999999999999998765544332 4444443 36899999999998632 1111 1223333344
Q ss_pred ccccccccccccCcceeEEeecCCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+++++++||++|.|+++++..+..
T Consensus 136 ~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 136 YGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5678899999999999997766643
No 65
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.88 E-value=8.5e-23 Score=158.49 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=107.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++....+...+.++++..+... ..... ..+ .+.||||||++
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~-~~~~~-----~~~----------------~l~i~Dt~G~~ 60 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGG-----EPY----------------TLGLFDTAGQE 60 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEE-EEECC-----EEE----------------EEEEEECCCcc
Confidence 599999999999999999998888666655554433211 11100 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCccccc-------chhhHHHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNTM-------NRRDVRDII 174 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~~-------~~~~~~~~~ 174 (259)
.|...+..+++.+|++|+|+|+++..+..... |+..+.. .+.|+++|+||+|+....... .+....+..
T Consensus 61 ~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 61 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHH
Confidence 99988888999999999999998876666542 5555543 368999999999986421000 001111222
Q ss_pred hhhhcccc-ccccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+.+....+ +.++++||++|.|+.+++..+
T Consensus 141 ~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 141 EKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred HHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 33333344 678899999999998866544
No 66
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=6.5e-23 Score=178.16 Aligned_cols=204 Identities=25% Similarity=0.267 Sum_probs=127.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|+.++|||||+++|++.....+......... ......+..+........ .+.......++||||||
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~-~d~~~~E~~rG~Ti~~~~------~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQ-IDNAPEEKARGITINTAH------VEYETENRHYAHVDCPG 84 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhccccccccc-ccCCHHHHhcCcceeeEE------EEEcCCCEEEEEEECCc
Confidence 35599999999999999999974311100000000000 000000000000000000 00011122499999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
|++|...+...+..+|++++|+|++++...++.+++..+...++|.+ +++||+|+...+. ..+.+.+.++.+....+
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~--~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE--LLELVEMEVRELLSEYD 162 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHH--HHHHHHHHHHHHHHhcC
Confidence 99999888888899999999999999888999999999998999865 6899999874211 11222233444433332
Q ss_pred -----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhc
Q psy6316 183 -----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 183 -----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 257 (259)
++++++||++|.+-.. . +.+-+...++++++..+.+.+..+.||+|+|+++|+
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~---------~-------------~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~ 220 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDA---------E-------------WEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFS 220 (394)
T ss_pred CCccCccEEECccccccccCC---------c-------------hhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEe
Confidence 6788999998853110 1 111223566777776667778888999999999997
Q ss_pred c
Q psy6316 258 I 258 (259)
Q Consensus 258 ~ 258 (259)
+
T Consensus 221 ~ 221 (394)
T TIGR00485 221 I 221 (394)
T ss_pred e
Confidence 5
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=7.3e-23 Score=157.06 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=102.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++++..+...+.++...... ..... ....+ .+.+|||||++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-----~~~~~----------------~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEI-----DGEVC----------------LLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEE-----CCEEE----------------EEEEEECCCcc
Confidence 5999999999999999999988775544333321110 00000 00001 28899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++..++..+++.+|++++|+|+++..+..... +...+. ..+.|+++|+||+|+.... .... .........
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~-~~~~----~~~~~~~~~ 134 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER-VVST----EEGKELARQ 134 (164)
T ss_pred cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-eEcH----HHHHHHHHH
Confidence 99999999999999999999998765544432 223322 2368999999999986421 1111 122233333
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+.+++++||++|.|+++++..+.
T Consensus 135 ~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 135 WGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred cCCEEEEeecCCCCCHHHHHHHHH
Confidence 457889999999999988665543
No 68
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=9.4e-23 Score=156.17 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=106.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+..+...+.++++.+.......... ..+ .+.+|||||++
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDG-----IKV----------------RIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-----EEE----------------EEEEEeCCCcH
Confidence 599999999999999999998887665555544333221111111 001 18999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|.++..+..... ++..+.. .+.|+++|+||+|+..... .. .+....+...+
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~-v~----~~~~~~~~~~~ 135 (161)
T cd04117 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ-VG----DEQGNKLAKEY 135 (161)
T ss_pred hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC-CC----HHHHHHHHHHc
Confidence 99999999999999999999998865554433 4444433 3589999999999863211 11 12233333444
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+++++++||++|.|+++++..+
T Consensus 136 ~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 136 GMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred CCEEEEEeCCCCCCHHHHHHHH
Confidence 5778999999999998876654
No 69
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.88 E-value=7.5e-23 Score=158.57 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=112.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+.++....+...+.++++..+... ...+ ...+ .+.||||+|++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~-~~~~-----~~~v----------------~l~i~Dt~G~~ 60 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VSVD-----GNTV----------------NLGLWDTAGQE 60 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEE-EEEC-----CEEE----------------EEEEEECCCCc
Confidence 599999999999999999999988766666664333111 1110 0111 29999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCccc-----ccchhhHHHHHhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWN-----TMNRRDVRDIIKS 176 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~-----~~~~~~~~~~~~~ 176 (259)
+|..++..+++.+|++|+|+|.++..+.... .|+..++. .+.|+++|+||+|+..... ........+..+.
T Consensus 61 ~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~ 140 (176)
T cd04133 61 DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE 140 (176)
T ss_pred cccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH
Confidence 9999999999999999999999988787764 46666653 3689999999999963210 0000112333444
Q ss_pred hhccccc-cccccccccCcceeEEeecCC
Q psy6316 177 QESSVQT-HKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 177 ~~~~~~~-~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+....+. .++++||++|.|+++++..+.
T Consensus 141 ~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 141 LRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred HHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 4455555 478999999999988765554
No 70
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.88 E-value=1.1e-22 Score=184.27 Aligned_cols=177 Identities=28% Similarity=0.379 Sum_probs=123.1
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc---CCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV---QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.|+++|++++|||||+++|.+.+. .+...++++.+.+........ ...+.|||||
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~----------------------g~~i~~IDtP 59 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD----------------------GRVLGFIDVP 59 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC----------------------CcEEEEEECC
Confidence 489999999999999999986432 222223444444332211100 0128999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||++|...+...+..+|++++|+|++++...++.+++..+...++| +++|+||+|+...+ ..+.....+.......
T Consensus 60 Ghe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~---~~~~v~~ei~~~l~~~ 136 (614)
T PRK10512 60 GHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA---RIAEVRRQVKAVLREY 136 (614)
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHH---HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988888888 57999999997321 1223333444443322
Q ss_pred ---cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhcc
Q psy6316 182 ---QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 182 ---~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 258 (259)
..+++++||++|.|++.++. .+.+ +..+....+.+|+|+|+++|+|
T Consensus 137 ~~~~~~ii~VSA~tG~gI~~L~~------------------------------~L~~-~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 137 GFAEAKLFVTAATEGRGIDALRE------------------------------HLLQ-LPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHH------------------------------HHHH-hhccccCcCCCceEEEEEEecc
Confidence 35788999999999865322 1212 1222233567888999998875
No 71
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=1.4e-22 Score=158.95 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=105.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+...+.+++...+... .... ....+ .+.+|||||++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~----~~~~~----------------~l~i~Dt~G~~ 60 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGP----NGKII----------------ELALWDTAGQE 60 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEec----CCcEE----------------EEEEEECCCch
Confidence 599999999999999999998887655544443332111 0000 00011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+...... .........+++....
T Consensus 61 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~v~~~~~~~~~~~~ 139 (187)
T cd04132 61 EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNL-DRKVTPAQAESVAKKQ 139 (187)
T ss_pred hHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccc-cCCcCHHHHHHHHHHc
Confidence 99999888999999999999998866665543 4444432 46899999999998642211 0011122333344444
Q ss_pred cc-cccccccccCcceeEEeecC
Q psy6316 182 QT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
+. +++++||++|.|+++++..+
T Consensus 140 ~~~~~~e~Sa~~~~~v~~~f~~l 162 (187)
T cd04132 140 GAFAYLECSAKTMENVEEVFDTA 162 (187)
T ss_pred CCcEEEEccCCCCCCHHHHHHHH
Confidence 55 78899999999998866544
No 72
>PRK12735 elongation factor Tu; Reviewed
Probab=99.88 E-value=7.2e-23 Score=177.78 Aligned_cols=206 Identities=24% Similarity=0.241 Sum_probs=128.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++++|||||+++|++.....+........ .....+.+..+........ .+......+++|+||||
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~-~~d~~~~E~~rGiT~~~~~------~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYD-QIDNAPEEKARGITINTSH------VEYETANRHYAHVDCPG 84 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhh-hccCChhHHhcCceEEEee------eEEcCCCcEEEEEECCC
Confidence 3459999999999999999998632111100000000 0000000000000000000 00011222499999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
|.+|.......+..+|++++|+|+..+...++.+++..+...++|.+ +++||+|+...+ ...+.+...+..+....
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHHHHHHHHHHHcC
Confidence 99999888889999999999999999888888899999988999966 579999997321 11222233333333332
Q ss_pred ----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhc
Q psy6316 182 ----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 182 ----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 257 (259)
..+++++||++|.+... ...|+ . -+...++++++.++.+.+..+.||+|+|+++|+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~-------~~~w~-----~--------~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~ 222 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDD-------DEEWE-----A--------KILELMDAVDSYIPEPERAIDKPFLMPIEDVFS 222 (396)
T ss_pred CCcCceeEEecchhccccCCC-------CCccc-----c--------cHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEe
Confidence 35778999999988421 11111 1 123566666666667778888999999999997
Q ss_pred c
Q psy6316 258 I 258 (259)
Q Consensus 258 ~ 258 (259)
+
T Consensus 223 v 223 (396)
T PRK12735 223 I 223 (396)
T ss_pred c
Confidence 5
No 73
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.6e-22 Score=162.66 Aligned_cols=159 Identities=17% Similarity=0.120 Sum_probs=113.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||++++....+...+.++++..+.. .... ....+ .+.||||+|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~-----~~~~v----------------~l~iwDTaG 70 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLET-----EEQRV----------------ELSLWDTSG 70 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEE-----CCEEE----------------EEEEEeCCC
Confidence 3569999999999999999999988876666665443321 1111 00111 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH--HHHHHHHHh--CCCCEEEEEecccccCcccc-------cchhhHHH
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT--IESINILKS--KKTPFVVALNKIDRLYNWNT-------MNRRDVRD 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~--~~~l~~~~~--~~~piivv~NK~D~~~~~~~-------~~~~~~~~ 172 (259)
++.|..++..+++.+|++++|+|+++..+... ..|+..+.. .+.|+++|+||+|+...... .......+
T Consensus 71 ~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~ 150 (232)
T cd04174 71 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYE 150 (232)
T ss_pred chhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHH
Confidence 99999999999999999999999998777765 246666654 36899999999998531100 00112233
Q ss_pred HHhhhhccccc-cccccccccCc-ceeEEeecCC
Q psy6316 173 IIKSQESSVQT-HKTVESARKGQ-EICIKIEPIP 204 (259)
Q Consensus 173 ~~~~~~~~~~~-~~i~~Sa~~g~-gv~~~l~~i~ 204 (259)
..+++....+. .++++||++|. |+++++..+.
T Consensus 151 e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~ 184 (232)
T cd04174 151 QGCALAKQLGAEVYLECSAFTSEKSIHSIFRSAS 184 (232)
T ss_pred HHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHH
Confidence 45566666677 57899999997 7988766553
No 74
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.88 E-value=2e-22 Score=154.00 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=97.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++....+.. +.++++... .. +. +....+.+|||||++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~----~~----------~~-----------~~~~~~~l~D~~G~~ 55 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ET----------VE-----------YKNISFTVWDVGGQD 55 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce----EE----------EE-----------ECCEEEEEEECCCCH
Confidence 39999999999999999997665532 222221111 00 00 001129999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHH-Hh---CCCCEEEEEecccccCcccccchhhHHHHHhh-hhc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINIL-KS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS-QES 179 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~-~~~ 179 (259)
.+...+..+++.+|++++|+|+++..+... .+++..+ .. .+.|+++++||+|+.... ..+++...+.. ...
T Consensus 56 ~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~ 132 (159)
T cd04150 56 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM---SAAEVTDKLGLHSLR 132 (159)
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC---CHHHHHHHhCccccC
Confidence 999999999999999999999987543332 2233333 22 358999999999986321 12233332211 111
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
..++.++++||++|.|+++++..+.
T Consensus 133 ~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 133 NRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 2245567899999999998766553
No 75
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=1.1e-22 Score=158.45 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=110.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++....+...+.+++...+.. ...... ..+ .+.+|||+|+
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~-~~~~~~-----~~~----------------~l~iwDtaG~ 63 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDT-----QRI----------------ELSLWDTSGS 63 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEE-EEEECC-----EEE----------------EEEEEECCCc
Confidence 359999999999999999999988876665555433311 111110 111 2999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCccc-------ccchhhHHHH
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWN-------TMNRRDVRDI 173 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~-------~~~~~~~~~~ 173 (259)
+.|..++..+++.+|++++|+|.++..+.... .|+..++. .+.|+++|+||+|+..... ........+.
T Consensus 64 e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 64 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 99999999999999999999999988777664 45555554 3689999999999853100 0011122334
Q ss_pred Hhhhhccccc-cccccccccCcc-eeEEeec
Q psy6316 174 IKSQESSVQT-HKTVESARKGQE-ICIKIEP 202 (259)
Q Consensus 174 ~~~~~~~~~~-~~i~~Sa~~g~g-v~~~l~~ 202 (259)
.+++....++ .++++||++|.| +++++..
T Consensus 144 ~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 144 GANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred HHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 5555666664 788999999998 9876543
No 76
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=6.9e-23 Score=156.98 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=103.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++++..+......+.+..+......... ..+ .+.+|||||++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-----~~~----------------~~~i~D~~G~~ 61 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-----TTV----------------KFEIWDTAGQE 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEeCCchH
Confidence 599999999999999999999887654433333222221121111 011 18999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++++||+|+... ......+ ........
T Consensus 62 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-~~~~~~~----~~~~~~~~ 136 (163)
T cd01860 62 RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK-RQVSTEE----AQEYADEN 136 (163)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc-CcCCHHH----HHHHHHHc
Confidence 998888889999999999999987544333 334454444 35789999999998632 1112222 22233333
Q ss_pred cccccccccccCcceeEEeecCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
++.++++||++|.|+..++..+.
T Consensus 137 ~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 137 GLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 47789999999999988665543
No 77
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=9.4e-23 Score=156.90 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=97.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCC-CCCC-cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQD-GEAG-GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+++|++|+|||||+++|.+..... +... ....+.+... ..+. +....+.+|||||
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~----------~~~~-----------~~~~~~~l~Dt~G 59 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI----------GTIE-----------VGNARLKFWDLGG 59 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce----------EEEE-----------ECCEEEEEEECCC
Confidence 48999999999999999997643210 0000 0000000000 0000 1111399999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
+..+...+..+++.+|++++|+|+++..+... ..++..+. ..+.|+++++||+|+.... ...+....+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~---~~~~~~~~~~~~~ 136 (167)
T cd04160 60 QESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL---SVEEIKEVFQDKA 136 (167)
T ss_pred ChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC---CHHHHHHHhcccc
Confidence 99999999999999999999999976433222 22333332 2478999999999986421 2233444333332
Q ss_pred ---ccccccccccccccCcceeEEeecC
Q psy6316 179 ---SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 179 ---~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....++++++||++|+|+++++..+
T Consensus 137 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 137 EEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 1224678899999999998866544
No 78
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=1.1e-22 Score=155.79 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=105.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+..+.....++.+.++.......... .. .+.+|||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK-----RV----------------KLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-----EE----------------EEEEEECCChH
Confidence 5999999999999999999988775555444443332222211100 00 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..++..+|++++|+|+++..+..... ++..+.. .+.|+++++||+|+.... ....+... .+....
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~-~~~~~~~~----~~~~~~ 135 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR-QVSREEAE----AFAEEH 135 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc-CCCHHHHH----HHHHHc
Confidence 99999999999999999999998765544433 4444433 468999999999986421 11222222 233344
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+++++++||++|.|+++++..+
T Consensus 136 ~~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 136 GLPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred CCeEEEEeCCCCCCHHHHHHHH
Confidence 5788999999999998755443
No 79
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=7.6e-23 Score=179.66 Aligned_cols=144 Identities=26% Similarity=0.367 Sum_probs=99.5
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC---CCHHHHHHHHHHHhCC-CCEEEEEecccccCcccccchhhH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG---LEPQTIESINILKSKK-TPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~---~~~~~~~~l~~~~~~~-~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
.+.|||||||++|...+...+..+|++++|+|++++ ...+..+++......+ .|+++++||+|+... .....+..
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~-~~~~~~~~ 164 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNY-DEEEFEAI 164 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCc-cHHHHHHH
Confidence 499999999999988888888999999999999987 4445555555555555 468899999999631 11122333
Q ss_pred HHHHhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchh
Q psy6316 171 RDIIKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTD 245 (259)
Q Consensus 171 ~~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 245 (259)
...++.+.... .++++++||++|.|+.+.... .+|+.+ . ..++++.+ +..+.+..+
T Consensus 165 ~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~----~~w~~g------~--------~l~~~l~~-~~~~~~~~~ 225 (426)
T TIGR00483 165 KKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN----TPWYKG------K--------TLLEALDA-LEPPEKPTD 225 (426)
T ss_pred HHHHHHHHHHcCCCcccceEEEeeccccccccccccC----Cccccc------h--------HHHHHHhc-CCCCCCccC
Confidence 44444444333 357889999999999885432 344321 1 23344433 445556678
Q ss_pred hHHHHHHHHhhcc
Q psy6316 246 WQLMVDLKKVFQI 258 (259)
Q Consensus 246 ~~~~~~i~~~~~~ 258 (259)
.||+|+|+++|++
T Consensus 226 ~p~r~~i~~v~~~ 238 (426)
T TIGR00483 226 KPLRIPIQDVYSI 238 (426)
T ss_pred CCcEEEEEEEEec
Confidence 8999999999975
No 80
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=1.2e-22 Score=156.86 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=101.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++++...+...+..+++.+.......... ... .+.+|||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG-----ERI----------------KVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC-----eEE----------------EEEEEeCCC
Confidence 35699999999999999999998776554444443322211111100 001 289999999
Q ss_pred CcchH-HHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 104 HESFS-NLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 104 ~~~~~-~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
++++. ..+..+++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.... .......+++
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~ 135 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQI-----QVPTDLAQRF 135 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhc-----CCCHHHHHHH
Confidence 98886 46777889999999999999876665544 4444443 358999999999986421 1112223333
Q ss_pred hcccccccccccccc---CcceeEEee
Q psy6316 178 ESSVQTHKTVESARK---GQEICIKIE 201 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~---g~gv~~~l~ 201 (259)
....+++++++||++ +.++.+++.
T Consensus 136 ~~~~~~~~~e~Sa~~~~~~~~i~~~f~ 162 (170)
T cd04115 136 ADAHSMPLFETSAKDPSENDHVEAIFM 162 (170)
T ss_pred HHHcCCcEEEEeccCCcCCCCHHHHHH
Confidence 444457889999999 666655443
No 81
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=172.07 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=113.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+.|+++|+||+|||||+|+|++... ++..++..+|.+. ..+.. .+....|.++||+|.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~------AIV~D~pGvTRDr------~y~~~----------~~~~~~f~lIDTgGl 61 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI------AIVSDTPGVTRDR------IYGDA----------EWLGREFILIDTGGL 61 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee------eEeecCCCCccCC------cccee----------EEcCceEEEEECCCC
Confidence 6799999999999999999998876 3555554443332 11111 222334999999995
Q ss_pred cchH---------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 105 ESFS---------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 105 ~~~~---------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+... .....++..||++|||+|+..+.++.+..+.+.++..++|+++|+||+|.... .....
T Consensus 62 ~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~---------e~~~~ 132 (444)
T COG1160 62 DDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA---------EELAY 132 (444)
T ss_pred CcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh---------hhhHH
Confidence 5322 22345678999999999999999999999999999888999999999997521 22233
Q ss_pred hhhccccccccccccccCcceeEEeecCCCCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPGEAP 208 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~ 208 (259)
++....--.++++||..|.|+..++++++...+
T Consensus 133 efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 133 EFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred HHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 444444457889999999999998887766653
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=2.2e-22 Score=154.00 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=97.5
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc-CCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV-QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+|+++|.+|+|||||+++|.+... .....++++ ....... ... ..+.+|||||+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g----~~~~~~~-----~~~----------------~~~~l~Dt~G~ 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG----FNVESFE-----KGN----------------LSFTAFDMSGQ 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc----cceEEEE-----ECC----------------EEEEEEECCCC
Confidence 389999999999999999987643 222222221 1110000 001 12899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHH------hCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILK------SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~------~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
..+...+..+++.+|++++|+|+++..+... ..++..+. ..++|+++|+||+|+.... ...++...+...
T Consensus 56 ~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~ 132 (162)
T cd04157 56 GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLE 132 (162)
T ss_pred HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCc
Confidence 9999999999999999999999987644322 22333322 2468999999999986321 112222222111
Q ss_pred h-ccccccccccccccCcceeEEeecC
Q psy6316 178 E-SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~-~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
. ....+.++++||++|.|+++++..+
T Consensus 133 ~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 133 NIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred cccCceEEEEEeeCCCCCchHHHHHHH
Confidence 1 1223567899999999999877654
No 83
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.88 E-value=3.4e-22 Score=180.23 Aligned_cols=134 Identities=64% Similarity=0.945 Sum_probs=102.6
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccc-cccCCCCCCCCCCCCCCCCeEEE
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTK-HVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..|+|.|+++|++|+|||||+++|.+..+...+.+.++..++.+..+......... ..... +..+....++||
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~i 76 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPL------PIKLKIPGLLFI 76 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccc------ccccccCCEEEE
Confidence 57899999999999999999999998877766666677677655544322110000 00000 011222348999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
|||||+.|..++...++.+|++++|+|++++...++.+.+..+...++|+++++||+|+..
T Consensus 77 DTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 77 DTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIP 137 (586)
T ss_pred ECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCch
Confidence 9999999999999889999999999999998888888888888888999999999999863
No 84
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.88 E-value=2.1e-22 Score=158.81 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=105.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCC-CCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQD-GEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+|+++|.+|+|||||++++++..+.. .+.++++..+.......... .+ .+.+|||||+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~----------------~l~i~D~~G~ 60 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER-----VV----------------TLGIWDTAGS 60 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE-----EE----------------EEEEEECCCc
Confidence 59999999999999999999887753 23333333221111111100 01 1789999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
+++..++..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+...... ........+..+....
T Consensus 61 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~-~~~v~~~~~~~~~~~~ 139 (193)
T cd04118 61 ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS-LRQVDFHDVQDFADEI 139 (193)
T ss_pred hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc-cCccCHHHHHHHHHHc
Confidence 99988888889999999999999876554432 355555543 6899999999998642110 0111112233344445
Q ss_pred cccccccccccCcceeEEeecCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+.+++++||++|.|+++++..+.
T Consensus 140 ~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 140 KAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 67788999999999988665553
No 85
>PLN03127 Elongation factor Tu; Provisional
Probab=99.88 E-value=2e-22 Score=176.53 Aligned_cols=203 Identities=24% Similarity=0.283 Sum_probs=125.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|+.++|||||+++|.+.....+......... ....+.+..+....... ..+......+++|+||||
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~-~D~~~~E~~rGiTi~~~------~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDE-IDKAPEEKARGITIATA------HVEYETAKRHYAHVDCPG 133 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeecc-ccCChhHhhcCceeeee------EEEEcCCCeEEEEEECCC
Confidence 45699999999999999999964321111100000000 00000000000000000 000111223499999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
|.+|...+...+..+|++++|+|+..+...++.+++..+...++| +|+++||+|+..... ..+.+...+..+....
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~--~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE--LLELVEMELRELLSFYK 211 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH--HHHHHHHHHHHHHHHhC
Confidence 999988888888899999999999999999999999999999999 578899999974211 1122222333333221
Q ss_pred ----ccccccccccc---CcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6316 182 ----QTHKTVESARK---GQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKK 254 (259)
Q Consensus 182 ----~~~~i~~Sa~~---g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 254 (259)
..+++++||.+ |.|.. .. .+-+.+.++++++.++.+.+..+.+|+|+|++
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~-------------~~----------~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~ 268 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDE-------------IG----------KNAILKLMDAVDEYIPEPVRVLDKPFLMPIED 268 (447)
T ss_pred CCCCcceEEEeccceeecCCCcc-------------cc----------cchHHHHHHHHHHhCCCCCcccccceEeeEEE
Confidence 35667777764 33311 00 01124566777777777888889999999999
Q ss_pred hhcc
Q psy6316 255 VFQI 258 (259)
Q Consensus 255 ~~~~ 258 (259)
+|++
T Consensus 269 vf~v 272 (447)
T PLN03127 269 VFSI 272 (447)
T ss_pred EEEc
Confidence 9975
No 86
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.3e-22 Score=159.93 Aligned_cols=172 Identities=24% Similarity=0.291 Sum_probs=102.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc----cCC---CCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN----VQD---GEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
+|+++|++|+|||||+++|++.. +.. ...++.+.................. .. ........+++
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~i 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRE-LI--------NPGEENLQITL 72 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccc-cc--------cccccCceEEE
Confidence 59999999999999999998631 100 0001111111111111100000000 00 00111224999
Q ss_pred EeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCccc-ccchhhHHHHHhhh
Q psy6316 99 IDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWN-TMNRRDVRDIIKSQ 177 (259)
Q Consensus 99 iDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~-~~~~~~~~~~~~~~ 177 (259)
|||||+..+........+.+|++++|+|++++...++.+.+......+.|+++++||+|+..... ....+++.+.+...
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 99999987766666677889999999999987777766665555556889999999999873211 11112222222222
Q ss_pred h---ccccccccccccccCcceeEEeecCCCC
Q psy6316 178 E---SSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 178 ~---~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
. ...+++++++||++|.|+++++..+...
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 1 1235688999999999998866555433
No 87
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.88 E-value=9.8e-22 Score=156.63 Aligned_cols=115 Identities=27% Similarity=0.277 Sum_probs=82.8
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~ 171 (259)
..++.||||||+.+|...+...+..+|++++|+|++.+...++...+..+...+.| +|+|+||+|+.... ......+.
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~-~~~~~~i~ 154 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS-EEVFEEIV 154 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC-HHHHHHHH
Confidence 34599999999999888788888999999999999988777777777777766654 77799999986321 11122334
Q ss_pred HHHhhhhcccc---ccccccccccCcceeEEeecCCCCCCcccc
Q psy6316 172 DIIKSQESSVQ---THKTVESARKGQEICIKIEPIPGEAPKMFG 212 (259)
Q Consensus 172 ~~~~~~~~~~~---~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~ 212 (259)
..++.+...++ .+++++||++|.|+.+.. ...+|+++
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~----~~~~w~~g 194 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSRS----ENMPWYSG 194 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccCC----CCCCCCCC
Confidence 44444443333 457899999999998743 45666654
No 88
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=2e-22 Score=156.21 Aligned_cols=152 Identities=21% Similarity=0.207 Sum_probs=100.3
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|++|+|||||+++|.+..+.. . ..+.+....... .. ...+.+||||
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-~----~~t~g~~~~~~~-----~~----------------~~~l~l~D~~ 66 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-I----SPTLGFQIKTLE-----YE----------------GYKLNIWDVG 66 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-c----CCccccceEEEE-----EC----------------CEEEEEEECC
Confidence 34669999999999999999998764421 1 111111110000 00 1128999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHH----HhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINIL----KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~----~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|++.+...+..+++.+|++++|+|+++..+.... .++..+ ...+.|+++|+||+|+.... ..+++...++..
T Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~ 143 (173)
T cd04154 67 GQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELD 143 (173)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCcc
Confidence 9999888899999999999999999875433322 233332 22578999999999986421 223333333221
Q ss_pred -hccccccccccccccCcceeEEeecC
Q psy6316 178 -ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 -~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.....++++++||++|.|+++++..+
T Consensus 144 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 144 KISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred ccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 12235688999999999998866554
No 89
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.87 E-value=9.7e-23 Score=155.89 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=102.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+++|.+..+.....++.+.++......... ..+ .+.+|||||++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~l~D~~g~~ 60 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG-----KKV----------------KLAIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC-----EEE----------------EEEEEECCCch
Confidence 599999999999999999998776544333333222111111100 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.+...+...++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ...++ ...+...
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~--~~~~~----~~~~~~~ 134 (161)
T cd01863 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE--VTREE----GLKFARK 134 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc--cCHHH----HHHHHHH
Confidence 99888888999999999999998765544433 3333332 468899999999997321 11222 2223333
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++++++||++|.|+++++..+
T Consensus 135 ~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 135 HNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred cCCEEEEEecCCCCCHHHHHHHH
Confidence 46788999999999998866544
No 90
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.87 E-value=1.2e-22 Score=178.01 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=107.4
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-------CHHHHHHHHHHHhCCCC-EEEEEecccccC-cccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-------EPQTIESINILKSKKTP-FVVALNKIDRLY-NWNT 164 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~p-iivv~NK~D~~~-~~~~ 164 (259)
..++|+|||||++|...+..++..+|++|+|+|++.+. ..+..+++..+...++| +|+++||+|+.. .+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 34999999999999999999999999999999998762 25778888888889996 688999999762 2223
Q ss_pred cchhhHHHHHhhhhcccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHh
Q psy6316 165 MNRRDVRDIIKSQESSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRD 239 (259)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 239 (259)
...+++.+.++.+....+ ++++++||++|+|+.+... ..+|+.+ + ..+++|++ +..
T Consensus 165 ~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~----~~~Wy~g------~--------tLl~~l~~-i~~ 225 (447)
T PLN00043 165 ARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST----NLDWYKG------P--------TLLEALDQ-INE 225 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc----CCcccch------H--------HHHHHHhh-cCC
Confidence 334555566666555443 5688999999999975322 2333311 1 23444444 456
Q ss_pred hcCchhhHHHHHHHHhhcc
Q psy6316 240 DLQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~ 258 (259)
+.+..+.||+|+|+++|++
T Consensus 226 p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 226 PKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred CccccCCCcEEEEEEEEEe
Confidence 7778899999999999975
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.87 E-value=1.9e-22 Score=155.81 Aligned_cols=152 Identities=24% Similarity=0.253 Sum_probs=101.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+..+......+++.++......... ..+ .+.+|||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD-----KLV----------------TLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC-----EEE----------------EEEEEeCCChH
Confidence 599999999999999999998877555444443332211111100 001 18899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH-------hCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK-------SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~-------~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
.+...+..+++.+|++|+|+|+++..+..... +...+. ..++|+++|+||+|+..+ .....+. ...+
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~----~~~~ 135 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-RQVSTKK----AQQW 135 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-cccCHHH----HHHH
Confidence 99999999999999999999998765433332 222221 126899999999999732 1111222 2223
Q ss_pred hcccc-ccccccccccCcceeEEeecC
Q psy6316 178 ESSVQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+ .+++++||++|.|++.++..+
T Consensus 136 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i 162 (172)
T cd01862 136 CQSNGNIPYFETSAKEAINVEQAFETI 162 (172)
T ss_pred HHHcCCceEEEEECCCCCCHHHHHHHH
Confidence 23333 688899999999998755433
No 92
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=2.1e-22 Score=161.40 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=108.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+++|.+..+...+.++++.++......... ..+ .+.||||||+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~-----~~~----------------~l~l~Dt~G~ 71 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-----KTV----------------KAQIWDTAGQ 71 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 4599999999999999999998877555444444333222221111 011 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+..++..+++.+|++|+|+|+++..+..... ++..+.. .+.|+++|+||+|+.... .... +..+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~----~~~~~l~~~ 146 (216)
T PLN03110 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR-SVAE----EDGQALAEK 146 (216)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc-CCCH----HHHHHHHHH
Confidence 999999999999999999999998866655543 5555544 468999999999986321 1111 122333334
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+++++++||++|.|+++++..+.
T Consensus 147 ~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 147 EGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 467899999999999998766554
No 93
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=2.7e-22 Score=160.43 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=103.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++++...+.. ..++++..+..... ..+ .+.||||||++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~---------~~~----------------~l~iwDt~G~e 55 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW---------GPY----------------NISIWDTAGRE 55 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe---------eEE----------------EEEEEeCCCcc
Confidence 59999999999999999999887743 22333322111100 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccc--------------cch
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNT--------------MNR 167 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~--------------~~~ 167 (259)
.|..++..+++.+|++|+|+|+++..+..... ++..+.. .+.|+|+|+||+|+...+.. ..+
T Consensus 56 ~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r 135 (220)
T cd04126 56 QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQR 135 (220)
T ss_pred cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccc
Confidence 99999999999999999999999876666553 3443433 35799999999998641100 011
Q ss_pred hhHHHHHhhhhcccc--------------ccccccccccCcceeEEeecCC
Q psy6316 168 RDVRDIIKSQESSVQ--------------THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 168 ~~~~~~~~~~~~~~~--------------~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....+..+.+....+ .+++++||++|.|+++++..+.
T Consensus 136 ~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 136 QVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred cCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 111222223333222 5678999999999998765554
No 94
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=3.6e-22 Score=152.54 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=98.6
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
|+++|.+|+|||||++++.+..+... .++.+... ..... .. ...+.+|||||+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~----~~~~~----~~----------------~~~l~i~D~~G~~~ 56 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV----EMLQL----EK----------------HLSLTVWDVGGQEK 56 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce----EEEEe----CC----------------ceEEEEEECCCCHh
Confidence 89999999999999999998776321 11111110 00000 00 01299999999999
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHH-Hh---CCCCEEEEEecccccCcccccchhhHHHHH--hhhhc
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINIL-KS---KKTPFVVALNKIDRLYNWNTMNRRDVRDII--KSQES 179 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~--~~~~~ 179 (259)
+...+..++..+|++++|+|+++..+... ..++..+ +. .+.|+++|+||+|+.... ..+++...+ ..+..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~~~~ 133 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL---TAEEITRRFKLKKYCS 133 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc---CHHHHHHHcCCcccCC
Confidence 99889999999999999999987543332 2233332 22 478999999999986321 123333322 22222
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|+|+++++..+
T Consensus 134 ~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 134 DRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred CCcEEEEecccccCCChHHHHHHH
Confidence 234578899999999999876655
No 95
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=1.3e-22 Score=159.53 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=106.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+...+.+++...+.. ....+ .... .+.||||||++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~-----~~~~----------------~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVD-----GLHI----------------ELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEEC-----CEEE----------------EEEEEECCCCh
Confidence 59999999999999999999888765544444322210 00000 0001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccccch-------hhHHHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNTMNR-------RDVRDII 174 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~-------~~~~~~~ 174 (259)
.+..++..+++.+|++++|+|.++..+.... .++..+.. .+.|+++|+||+|+......... .......
T Consensus 60 ~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 60 EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHH
Confidence 9988888889999999999999887666554 35555554 36899999999998643210000 0001111
Q ss_pred hhhhcccc-ccccccccccCcceeEEeecCCC
Q psy6316 175 KSQESSVQ-THKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 175 ~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+....+ +.++++||++|.|+++++..+..
T Consensus 140 ~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 140 LAVAKRINALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred HHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence 22222333 57889999999999997766543
No 96
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=4e-22 Score=156.22 Aligned_cols=173 Identities=29% Similarity=0.356 Sum_probs=109.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+|+|++............... ......+..+.. ..... .....+....+.||||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETF-LDVLKEERERGI--TIKSG----VATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceeccc-ccCCHHHHHcCC--Ceecc----eEEEeeCCEEEEEEeCCCcH
Confidence 489999999999999999988765433221111000 000000000000 00000 00001112249999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCccc-ccchhhHHHHHhhhh------
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWN-TMNRRDVRDIIKSQE------ 178 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~-~~~~~~~~~~~~~~~------ 178 (259)
++...+..+++.+|++++|+|++++......+++..+...+.|+++++||+|+..... ......+.+.++...
T Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
T cd00881 74 DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE 153 (189)
T ss_pred HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence 9988888999999999999999988877778888888888999999999999974211 111122222222221
Q ss_pred ----ccccccccccccccCcceeEEeecCCC
Q psy6316 179 ----SSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 179 ----~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.....+++++||++|.|+++++..+..
T Consensus 154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred hhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 123567889999999999886655443
No 97
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.87 E-value=1.3e-22 Score=177.89 Aligned_cols=146 Identities=25% Similarity=0.310 Sum_probs=106.6
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-------CHHHHHHHHHHHhCCCC-EEEEEecccccC-cccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-------EPQTIESINILKSKKTP-FVVALNKIDRLY-NWNT 164 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~p-iivv~NK~D~~~-~~~~ 164 (259)
..++|+|||||.+|...+...+..+|++++|+|++.+. ..++.+++..+...++| +|+++||+|... .++.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 34999999999999999999999999999999999875 36889999999999987 578999999532 2333
Q ss_pred cchhhHHHHHhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHh
Q psy6316 165 MNRRDVRDIIKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRD 239 (259)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 239 (259)
...+++.+.+....... .++++++||.+|.|+.+.- ...+|+.+ . ..++++++ +..
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~----~~~~Wy~G------~--------tL~~~l~~-~~~ 225 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKS----DNMPWYKG------P--------TLLEALDT-LEP 225 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCC----CCCcccch------H--------HHHHHHhC-CCC
Confidence 34555555565554433 3568899999999997532 22344321 1 12333333 344
Q ss_pred hcCchhhHHHHHHHHhhcc
Q psy6316 240 DLQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~ 258 (259)
+.+..+.||+|+|+++|++
T Consensus 226 ~~~~~~~p~r~~I~~v~~v 244 (446)
T PTZ00141 226 PKRPVDKPLRLPLQDVYKI 244 (446)
T ss_pred CCcCCCCCeEEEEEEEEec
Confidence 5667788999999999975
No 98
>KOG0460|consensus
Probab=99.87 E-value=1.5e-22 Score=164.50 Aligned_cols=205 Identities=22% Similarity=0.227 Sum_probs=136.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccccc-CccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNV-PADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..||+-+|+.++|||||..++..-....+. +....+..... +-++.+...-..... .++-..++|-.+|||
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~--A~~~kydeID~APEEkaRGITIn~aHv------eYeTa~RhYaH~DCP 125 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGG--AKFKKYDEIDKAPEEKARGITINAAHV------EYETAKRHYAHTDCP 125 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccc--cccccHhhhhcChhhhhccceEeeeee------eeeccccccccCCCC
Confidence 467999999999999999998643221111 01111111111 111111111000000 123334569999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||.+|.+.+.....+.|++|+|+.++++..+|.++++-..+..+++ +++.+||.|+..+.. ..+-..-.++++...+
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e--~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPE--MLELVEMEIRELLSEF 203 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHH--HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999887 567799999984321 1111222344444444
Q ss_pred c-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhh
Q psy6316 182 Q-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVF 256 (259)
Q Consensus 182 ~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 256 (259)
+ .++|.-||+ +..+. ..+++..+.+.+.+|++|++++.|.++++.||+|+|+++|
T Consensus 204 gf~Gd~~PvI~GSAL-----------------~ALeg---~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vf 263 (449)
T KOG0460|consen 204 GFDGDNTPVIRGSAL-----------------CALEG---RQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVF 263 (449)
T ss_pred CCCCCCCCeeecchh-----------------hhhcC---CCccccHHHHHHHHHHHhccCCCcccccCCCceeehhhee
Confidence 3 344433332 11111 1333455677899999999999999999999999999999
Q ss_pred cc
Q psy6316 257 QI 258 (259)
Q Consensus 257 ~~ 258 (259)
+|
T Consensus 264 sI 265 (449)
T KOG0460|consen 264 SI 265 (449)
T ss_pred ee
Confidence 98
No 99
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=2.4e-22 Score=156.22 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=108.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+...+.++++..+.. ..... ...+ .+.+|||||++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~-----~~~~----------------~l~iwDt~G~~ 60 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTA-SFEID-----EQRI----------------ELSLWDTSGSP 60 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEE-EEEEC-----CEEE----------------EEEEEECCCch
Confidence 59999999999999999999888766655555433211 11110 0111 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCccc-------ccchhhHHHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWN-------TMNRRDVRDII 174 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~-------~~~~~~~~~~~ 174 (259)
.|..+...+++.+|++|+|+|.++..+.... .|+..++. .+.|+++|+||+|+..... ........+..
T Consensus 61 ~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~ 140 (178)
T cd04131 61 YYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQG 140 (178)
T ss_pred hhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHH
Confidence 9998888899999999999999988777663 45555554 3689999999999853100 00011122344
Q ss_pred hhhhccccc-cccccccccCcc-eeEEeec
Q psy6316 175 KSQESSVQT-HKTVESARKGQE-ICIKIEP 202 (259)
Q Consensus 175 ~~~~~~~~~-~~i~~Sa~~g~g-v~~~l~~ 202 (259)
+++....+. .++++||++|+| +++++..
T Consensus 141 ~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 141 CAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred HHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 555566665 678999999995 8775543
No 100
>PRK00049 elongation factor Tu; Reviewed
Probab=99.87 E-value=2.1e-22 Score=174.84 Aligned_cols=206 Identities=25% Similarity=0.256 Sum_probs=128.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++++|||||+++|++.....+......... ....+.+..+........ ........+++|+||||
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~-~d~~~~E~~rg~Ti~~~~------~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQ-IDKAPEEKARGITINTAH------VEYETEKRHYAHVDCPG 84 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhh-ccCChHHHhcCeEEeeeE------EEEcCCCeEEEEEECCC
Confidence 45699999999999999999986421111100000000 000000000000000000 00011222499999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
|.+|.......+..+|++++|+|+..+...++.+++..+...++|.+ +++||+|+...+. ..+.+...+..+....
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~--~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE--LLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHH--HHHHHHHHHHHHHHhcC
Confidence 99998888888999999999999999989999999999999999976 5899999973211 1122233333333322
Q ss_pred ----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhc
Q psy6316 182 ----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 182 ----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 257 (259)
..+++++||++|.+.. ...+|+ +-+...++++++.++.+.+..+.||+|+|+++|+
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~-------~~~~w~-------------~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~ 222 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGD-------DDEEWE-------------KKILELMDAVDSYIPTPERAIDKPFLMPIEDVFS 222 (396)
T ss_pred CCccCCcEEEeecccccCCC-------Cccccc-------------ccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEe
Confidence 3577899999986521 111111 1123566677776777778889999999999997
Q ss_pred c
Q psy6316 258 I 258 (259)
Q Consensus 258 ~ 258 (259)
+
T Consensus 223 v 223 (396)
T PRK00049 223 I 223 (396)
T ss_pred e
Confidence 5
No 101
>KOG1145|consensus
Probab=99.87 E-value=2.2e-22 Score=172.48 Aligned_cols=154 Identities=41% Similarity=0.593 Sum_probs=128.5
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.-|+|.|-+||+.++|||||+.+|.+..+...+.++++..+|.-+...... . .++|.|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~---------------------~iTFLD 207 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-K---------------------SITFLD 207 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-C---------------------EEEEec
Confidence 358999999999999999999999999999999999999998777765421 1 299999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ--- 177 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~--- 177 (259)
||||..|..|+.+....+|.+++|+.+.++..+|+.+.++..+..++|+|+++||+|.+... .+...+.+-..
T Consensus 208 TPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~----pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 208 TPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN----PEKVKRELLSQGIV 283 (683)
T ss_pred CCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC----HHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999987542 22222222211
Q ss_pred hcc--ccccccccccccCcceeEEe
Q psy6316 178 ESS--VQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 178 ~~~--~~~~~i~~Sa~~g~gv~~~l 200 (259)
... ...+++++||++|+|++.+.
T Consensus 284 ~E~~GGdVQvipiSAl~g~nl~~L~ 308 (683)
T KOG1145|consen 284 VEDLGGDVQVIPISALTGENLDLLE 308 (683)
T ss_pred HHHcCCceeEEEeecccCCChHHHH
Confidence 111 14688999999999998643
No 102
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.87 E-value=2.8e-22 Score=153.75 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=102.3
Q ss_pred EEEEEeeCCCChhHHHhHHhcc--ccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT--NVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+++|.+|+|||||+++|... .+...+.++.+.++......... . ..+ .+.+|||||
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~---~~~----------------~l~i~Dt~G 61 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-D---NTV----------------ELFIFDSAG 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-C---CEE----------------EEEEEECCC
Confidence 5999999999999999999854 44444444444333222221110 0 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++.+..++..++..+|++++|+|+++..+.... .++..+... +.|+++|+||+|+..... ... ...+.+...
T Consensus 62 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~----~~~~~~~~~ 136 (164)
T cd04101 62 QELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE-VTD----AQAQAFAQA 136 (164)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC-CCH----HHHHHHHHH
Confidence 999999899999999999999999875444433 344555443 589999999999863211 111 111222333
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++++++||++|.|+.+++..+
T Consensus 137 ~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 137 NQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred cCCeEEEEeCCCCCChHHHHHHH
Confidence 45678899999999998765443
No 103
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.87 E-value=3.3e-22 Score=155.03 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=105.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+.+++...+...+.+++...+... ..... ..+ .+.||||||++
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~-~~~~~-----~~~----------------~l~i~Dt~G~~ 60 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDG-----KPV----------------NLGLWDTAGQE 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE-EEECC-----EEE----------------EEEEEECCCch
Confidence 599999999999999999998877655544443222111 11100 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCccccc-------chhhHHHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNTM-------NRRDVRDII 174 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~~-------~~~~~~~~~ 174 (259)
.+...+..+++.+|++|+|+|+++..+..... ++..+.. .+.|+++|+||+|+....... .........
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 140 (174)
T cd01871 61 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 140 (174)
T ss_pred hhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHH
Confidence 99999989999999999999999876666542 4444443 368999999999986321100 000112222
Q ss_pred hhhhcccc-ccccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+.+....+ ..++++||++|.|+++++..+
T Consensus 141 ~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 141 LAMAKEIGAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred HHHHHHcCCcEEEEecccccCCHHHHHHHH
Confidence 33343444 377899999999998876544
No 104
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=4.1e-22 Score=152.46 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=114.6
Q ss_pred hhhhhhhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCC
Q psy6316 2 QAVFNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGP 81 (259)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
.+.|.+++...++.|+.. .+.|+++|++|+|||||||+|++.+.......+.+.+...+...+
T Consensus 6 ~~~f~~sa~~~~~~P~~~----~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~------------- 68 (200)
T COG0218 6 KAKFITSAPDIKQYPEDD----LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV------------- 68 (200)
T ss_pred ccEEEEecCCHhhCCCCC----CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe-------------
Confidence 567899999999998875 566999999999999999999987632111111111111111111
Q ss_pred CCCCCCCCCCCCCCeEEEeCCC----------CcchHHHHHhhcc---CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC
Q psy6316 82 GGEVGGPGPLEIPGLLIIDTPG----------HESFSNLRNRGSS---LCDIAILVVDIMHGLEPQTIESINILKSKKTP 148 (259)
Q Consensus 82 ~~~~~~~~~~~~~~~~liDtpG----------~~~~~~~~~~~~~---~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p 148 (259)
+. .+.|+|.|| .+.+..+...|++ ...++++++|+..+....+.+.+..+...++|
T Consensus 69 ~~-----------~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~ 137 (200)
T COG0218 69 DD-----------ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP 137 (200)
T ss_pred cC-----------cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 01 189999999 2334455555653 47889999999999999999999999999999
Q ss_pred EEEEEecccccCcccccchhhHHHHHh-hhhcccccc--ccccccccCcceeE
Q psy6316 149 FVVALNKIDRLYNWNTMNRRDVRDIIK-SQESSVQTH--KTVESARKGQEICI 198 (259)
Q Consensus 149 iivv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~i~~Sa~~g~gv~~ 198 (259)
+++++||+|++... ........+. .+.....+. ++.+|+.++.|+++
T Consensus 138 ~~vv~tK~DKi~~~---~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 138 VIVVLTKADKLKKS---ERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDE 187 (200)
T ss_pred eEEEEEccccCChh---HHHHHHHHHHHHhcCCCCccceEEEEecccccCHHH
Confidence 99999999999531 1222223333 232223333 66789999999866
No 105
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.87 E-value=2.9e-22 Score=174.45 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=101.2
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHH
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
.++.|||||||++|...+...+..+|++++|+|+..+...++.+++..+...++| +++++||+|+... +....+++..
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~-~~~~~~~i~~ 158 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY-DEEVFENIKK 158 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc-hHHHHHHHHH
Confidence 3599999999999998888899999999999999999988888888888887765 7889999998742 1112223334
Q ss_pred HHhhhhccc---cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHH
Q psy6316 173 IIKSQESSV---QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLM 249 (259)
Q Consensus 173 ~~~~~~~~~---~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~ 249 (259)
.+..+.... ..+++++||++|+|+++.- ...+|+.+ . ..+++|+. +..+.+..+.+|+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~----~~~~wy~g------~--------tL~~~L~~-~~~~~~~~~~p~r 219 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVSRS----ESMPWYSG------P--------TLLEILET-VEVERDAQDLPLR 219 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcccc----cCCCccch------h--------HHHHHHHh-cCCCCCcCCCCcc
Confidence 443333222 3468899999999998632 22333211 1 12233333 3455567788999
Q ss_pred HHHHHhhc
Q psy6316 250 VDLKKVFQ 257 (259)
Q Consensus 250 ~~i~~~~~ 257 (259)
|+|+++|+
T Consensus 220 ~~i~~v~~ 227 (406)
T TIGR02034 220 FPVQYVNR 227 (406)
T ss_pred cceEEEee
Confidence 99998864
No 106
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.87 E-value=1.1e-21 Score=154.12 Aligned_cols=165 Identities=26% Similarity=0.208 Sum_probs=106.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++++|||||+++|++.....+..+..... .....+.+..+....... .........+++|+||||+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~-~~d~~~~E~~rg~Ti~~~------~~~~~~~~~~i~~iDtPG~ 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYD-EIDKAPEEKARGITINTA------HVEYETANRHYAHVDCPGH 75 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccc-cccCChhhhhcCccEEee------eeEecCCCeEEEEEECcCH
Confidence 469999999999999999998652111100000000 000000000110000000 0001122335999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHHHhhhhccc--
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV-- 181 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~-- 181 (259)
.+|.......+..+|++++|+|+..+...++.+++..+...++| +|+++||+|+.... ...+.+.+.+.......
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~--~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE--ELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH--HHHHHHHHHHHHHHHHhcc
Confidence 99998889999999999999999999899999999999999997 77899999986321 11222333444443332
Q ss_pred ---cccccccccccCcceeE
Q psy6316 182 ---QTHKTVESARKGQEICI 198 (259)
Q Consensus 182 ---~~~~i~~Sa~~g~gv~~ 198 (259)
..+++++||++|.++.+
T Consensus 154 ~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 154 DGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred cccCCeEEEeeCccccCCCC
Confidence 36788999999998643
No 107
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=3.3e-22 Score=154.18 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=101.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++.+..+......+++.+.......... ..+ .+.+|||||+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~~~D~~g~ 66 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG-----EKI----------------KLQIWDTAGQ 66 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 5699999999999999999997776555444443222111111110 001 1889999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHH---hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILK---SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~---~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
..+...+..++..+|++++|+|+++..+.... .++..++ ..+.|+++++||+|+.... ... .... +.+...
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~-~i~-~~~~---~~~~~~ 141 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR-EVS-QQRA---EEFSDA 141 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-ccC-HHHH---HHHHHH
Confidence 99999889999999999999999875443332 2333333 3468999999999986321 111 1112 222233
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+.++++||++|.|+++++..+
T Consensus 142 ~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 142 QDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred cCCeEEEeeCCCCCCHHHHHHHH
Confidence 34678899999999998865543
No 108
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=8.2e-22 Score=151.78 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=91.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
|+|+++|++|+|||||+|+|++..+.... ...++........ .+....++||||||+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~-------~~~~t~~~~~~~~----------------~~~~~~~~i~Dt~G~ 57 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP-------YPFTTKSLFVGHF----------------DYKYLRWQVIDTPGL 57 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC-------CCCcccceeEEEE----------------ccCceEEEEEECCCc
Confidence 47999999999999999999987653211 1111111110000 011113999999997
Q ss_pred cchH---------HHHHhhccCCCeEEEEEeCCCCCC---HHHHHHHHHHHhC--CCCEEEEEecccccCcccccchhhH
Q psy6316 105 ESFS---------NLRNRGSSLCDIAILVVDIMHGLE---PQTIESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 105 ~~~~---------~~~~~~~~~ad~~i~v~d~~~~~~---~~~~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
.+.. .........+|++++|+|+++..+ .....++..+... +.|+++|+||+|+... ...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~~ 131 (168)
T cd01897 58 LDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------EDL 131 (168)
T ss_pred CCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hhH
Confidence 3210 111112234799999999987533 2234456666554 7999999999999742 111
Q ss_pred HHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.. .+.......++++++||++|.|+++++..+
T Consensus 132 ~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (168)
T cd01897 132 SE-IEEEEELEGEEVLKISTLTEEGVDEVKNKA 163 (168)
T ss_pred HH-HHHhhhhccCceEEEEecccCCHHHHHHHH
Confidence 11 233334346788899999999998866543
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=4.7e-22 Score=150.99 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=105.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+..+...+.++.+............ ... .+.+||+||+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~D~~g~~ 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-----KTV----------------KLQIWDTAGQE 60 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-----EEE----------------EEEEEecCChH
Confidence 599999999999999999998887665444444333222221110 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhC---CCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSK---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+... ..++..+... +.|+++++||+|+... .....++ +..+....
T Consensus 61 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~----~~~~~~~~ 135 (159)
T cd00154 61 RFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-RQVSTEE----AQQFAKEN 135 (159)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-ccccHHH----HHHHHHHc
Confidence 999999999999999999999987433333 2345555543 4899999999999622 1112222 33333345
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+.+++.+||++|.|+.+++..+
T Consensus 136 ~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 136 GLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred CCeEEEEecCCCCCHHHHHHHH
Confidence 6789999999999998765543
No 110
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=4.5e-22 Score=156.25 Aligned_cols=153 Identities=22% Similarity=0.228 Sum_probs=104.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+...+..+.+.++......... ..+ .+.+|||||++
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~g~~ 60 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN-----KII----------------KLQIWDTNGQE 60 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-----EEE----------------EEEEEECCCcH
Confidence 599999999999999999998887654444444333221111110 011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+..... ++..+.. ...|+++++||+|+.... ..... ....+....
T Consensus 61 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~-~v~~~----~~~~~~~~~ 135 (188)
T cd04125 61 RFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK-VVDSN----IAKSFCDSL 135 (188)
T ss_pred HHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc-cCCHH----HHHHHHHHc
Confidence 99999999999999999999998765544433 4444443 357899999999986321 11111 122233334
Q ss_pred cccccccccccCcceeEEeecCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+++++++||++|.|+++++..+.
T Consensus 136 ~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 136 NIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 56889999999999988665543
No 111
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.87 E-value=4.4e-22 Score=173.44 Aligned_cols=201 Identities=21% Similarity=0.236 Sum_probs=122.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccC---CCCCCcceeeccccccCccccccccccccCCCCCC----CCCCCCCCCCe
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQ---DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEV----GGPGPLEIPGL 96 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 96 (259)
..+|+++|++++|||||+++|.+.... +...+.++...+.......... ............ .++.......+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCP-ECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEeccccccccccc-ccCccccccccccccccccccccccEE
Confidence 456999999999999999999754221 1111223333332221110000 000000000000 00000112349
Q ss_pred EEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-CHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHHHH
Q psy6316 97 LIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 97 ~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
++||||||++|...+...+..+|++++|+|++++. ..+..+++..+...+. |+++++||+|+...+ ...+..+.+
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~---~~~~~~~~i 159 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE---KALENYEEI 159 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH---HHHHHHHHH
Confidence 99999999999999999999999999999999876 6677778877777765 589999999997421 111112222
Q ss_pred hhhhcc---ccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHH
Q psy6316 175 KSQESS---VQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVD 251 (259)
Q Consensus 175 ~~~~~~---~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 251 (259)
..+... ..++++++||++|.|++. .++.+.+.++.+.+..+.+|+|+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~------------------------------L~e~L~~~l~~~~~~~~~~~~~~ 209 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDA------------------------------LLEAIEKFIPTPERDLDKPPLMY 209 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHH------------------------------HHHHHHHhCCCCCCCCCCCcEEE
Confidence 222221 246788999999998843 22333333455556667788899
Q ss_pred HHHhhcc
Q psy6316 252 LKKVFQI 258 (259)
Q Consensus 252 i~~~~~~ 258 (259)
|+++|+|
T Consensus 210 I~~~f~v 216 (406)
T TIGR03680 210 VARSFDV 216 (406)
T ss_pred EEEEEee
Confidence 9888854
No 112
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.87 E-value=2.4e-22 Score=158.71 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=105.5
Q ss_pred EeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcchHH
Q psy6316 30 LGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSN 109 (259)
Q Consensus 30 ~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 109 (259)
+|.+|+|||||+++++...+...+..+++.++......... ..+ .+.||||||++.|..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~-----~~~----------------~l~iwDt~G~e~~~~ 59 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-----GPI----------------RFNVWDTAGQEKFGG 59 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC-----EEE----------------EEEEEECCCchhhhh
Confidence 69999999999999998777665555555444322211111 111 299999999999999
Q ss_pred HHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccc
Q psy6316 110 LRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKT 186 (259)
Q Consensus 110 ~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 186 (259)
++..+++.+|++|+|+|+++..+.... .|+..+.. .+.|+++|+||+|+.... ...+. + .+....++.++
T Consensus 60 l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~--v~~~~----~-~~~~~~~~~~~ 132 (200)
T smart00176 60 LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK--VKAKS----I-TFHRKKNLQYY 132 (200)
T ss_pred hhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc--CCHHH----H-HHHHHcCCEEE
Confidence 999999999999999999987666554 35555654 468999999999985311 11111 1 23334568889
Q ss_pred ccccccCcceeEEeecCC
Q psy6316 187 VESARKGQEICIKIEPIP 204 (259)
Q Consensus 187 ~~Sa~~g~gv~~~l~~i~ 204 (259)
++||++|.|+.+.+..+.
T Consensus 133 e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 133 DISAKSNYNFEKPFLWLA 150 (200)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999998776664
No 113
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.87 E-value=8.9e-22 Score=152.79 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=99.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||++++....+. ...++++..+ .... ... ..+.+|||||
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~----~~~~-----~~~----------------~~l~l~D~~G 66 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNV----ETVT-----YKN----------------ISFTVWDVGG 66 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccce----EEEE-----ECC----------------EEEEEEECCC
Confidence 355999999999999999999755542 1222222111 0000 001 1299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ- 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~- 177 (259)
+..+...+..+++.+|++|+|+|+++..+... .+++..+.. .+.|+++|+||+|+.... ..+++...+...
T Consensus 67 ~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~ 143 (175)
T smart00177 67 QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHS 143 (175)
T ss_pred ChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccc
Confidence 99999999999999999999999987543332 334444322 358999999999986321 223333333211
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.....+.++++||++|.|+.+.++.+
T Consensus 144 ~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 144 IRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred cCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 11224556689999999998866544
No 114
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=6.8e-22 Score=151.85 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=100.9
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
|+++|.+|+|||||++++.+..+...+.++++. .... +... ...+.+|||||+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~----~~~~----------i~~~-----------~~~l~i~Dt~G~~~ 56 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----NSVA----------IPTQ-----------DAIMELLEIGGSQN 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCc----ceEE----------EeeC-----------CeEEEEEECCCCcc
Confidence 899999999999999999987665443333321 1100 0000 11299999999999
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHH--Hhhhhccc
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDI--IKSQESSV 181 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~--~~~~~~~~ 181 (259)
+...+..+++.+|++++|+|+++..+... ..++..+.. .++|+++|+||+|+.... ...++... +..+....
T Consensus 57 ~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~ 133 (164)
T cd04162 57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELEPIARGR 133 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC---CHHHHHHHhCChhhcCCC
Confidence 99999999999999999999987544332 334444432 478999999999986432 22222222 23444445
Q ss_pred ccccccccccc------CcceeEEeecC
Q psy6316 182 QTHKTVESARK------GQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~------g~gv~~~l~~i 203 (259)
++.++++||++ ++|+.+++..+
T Consensus 134 ~~~~~~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 134 RWILQGTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred ceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence 67777777777 88888765544
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.87 E-value=6.7e-22 Score=150.89 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=97.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+++|....+.. ..++++... .. +. +....+.+|||||+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~----~~----------~~-----------~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV----ET----------VT-----------YKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe----EE----------EE-----------ECCEEEEEEECCCCH
Confidence 38999999999999999997665432 111111110 00 00 001129999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHH-HHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhh-hc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESIN-ILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ-ES 179 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~-~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~-~~ 179 (259)
.+...+..+++.+|++++|+|+++..+... .+.+. .++. .++|+++++||+|+.... ...++...+... ..
T Consensus 55 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~ 131 (158)
T cd04151 55 SIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELK 131 (158)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccC
Confidence 999999999999999999999987433221 22222 2222 368999999999986421 122232222211 11
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
..+++++++||++|.|+++++..+.
T Consensus 132 ~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 132 DRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CCcEEEEEeeccCCCCHHHHHHHHh
Confidence 2235788999999999998766553
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=1e-21 Score=152.36 Aligned_cols=150 Identities=20% Similarity=0.155 Sum_probs=100.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|....+.. ..++++..+. ... +....+.+|||||+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~----~~~---------------------~~~~~~~l~D~~G~ 69 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE----EIV---------------------YKNIRFLMWDIGGQ 69 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE----EEE---------------------ECCeEEEEEECCCC
Confidence 459999999999999999998776542 2222221111 000 00112999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHH-Hh---CCCCEEEEEecccccCcccccchhhHHHHHhh-hh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINIL-KS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS-QE 178 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~-~~ 178 (259)
..+...+..+++.+|++++|+|+++..+... ...+..+ .. .+.|+++++||+|+.... ..+++.+.+.. ..
T Consensus 70 ~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~---~~~~i~~~l~~~~~ 146 (174)
T cd04153 70 ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM---TPAEISESLGLTSI 146 (174)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC---CHHHHHHHhCcccc
Confidence 9999999999999999999999987543322 2223332 22 358999999999986321 22333333321 11
Q ss_pred ccccccccccccccCcceeEEeecC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...+++++++||++|.|+++++..+
T Consensus 147 ~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 147 RDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred cCCceEEEecccCCCCCHHHHHHHH
Confidence 2345678899999999998876654
No 117
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=2.3e-22 Score=155.22 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=102.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccC-CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQ-DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..+|+++|.+|+|||||++++++..+. ..+.++++..+.......... .. .+.+||++
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~-----~~----------------~l~~~d~~ 62 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ-----EK----------------YLILREVG 62 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe-----EE----------------EEEEEecC
Confidence 456999999999999999999988876 555444443322111111100 00 28899999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
|++.+..++..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+...... .....+++...
T Consensus 63 g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~-----~~~~~~~~~~~ 137 (169)
T cd01892 63 EDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR-----YEVQPDEFCRK 137 (169)
T ss_pred CcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc-----cccCHHHHHHH
Confidence 9998888888889999999999999875443332 34444422 36899999999998632111 01111222333
Q ss_pred ccc-cccccccccCcceeEEeecC
Q psy6316 181 VQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
++. .++++||++|.|+++++..+
T Consensus 138 ~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 138 LGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred cCCCCCEEEEeccCccHHHHHHHH
Confidence 344 35889999999998765444
No 118
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=4.1e-22 Score=155.83 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=98.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||++++....+... .++.+.......... . ......+.+|||||
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~----~----------------~~~~~~l~l~Dt~G 61 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSL----G----------------NSKGITFHFWDVGG 61 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeec----c----------------CCCceEEEEEECCC
Confidence 34599999999999999999987765422 111111110000000 0 00011299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHH----HHhCCCCEEEEEecccccCcccccchhhHHHHHh--h
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINI----LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK--S 176 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~----~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~--~ 176 (259)
++.+...+..+++.+|++++|+|+++..+..... ++.. ....++|+++|+||+|+.... ..+++...+. .
T Consensus 62 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~~ 138 (183)
T cd04152 62 QEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL---SVSEVEKLLALHE 138 (183)
T ss_pred cHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC---CHHHHHHHhCccc
Confidence 9999999999999999999999998753333222 2222 233578999999999986321 1222222221 1
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
......++++++||++|.|+++++..+
T Consensus 139 ~~~~~~~~~~~~SA~~~~gi~~l~~~l 165 (183)
T cd04152 139 LSASTPWHVQPACAIIGEGLQEGLEKL 165 (183)
T ss_pred cCCCCceEEEEeecccCCCHHHHHHHH
Confidence 111123457789999999998865544
No 119
>KOG1423|consensus
Probab=99.86 E-value=9.1e-22 Score=158.01 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=136.0
Q ss_pred CCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCC
Q psy6316 15 NPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIP 94 (259)
Q Consensus 15 ~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (259)
++..+...|...|+++|.||+|||||.|.+++.++ ..++..+.+++....++...+..
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv------------~~vS~K~~TTr~~ilgi~ts~eT---------- 120 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKV------------SAVSRKVHTTRHRILGIITSGET---------- 120 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCcc------------ccccccccceeeeeeEEEecCce----------
Confidence 34445567788899999999999999999976654 34556667777766655544332
Q ss_pred CeEEEeCCC------CcchHH------HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC-CCCEEEEEecccccCc
Q psy6316 95 GLLIIDTPG------HESFSN------LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK-KTPFVVALNKIDRLYN 161 (259)
Q Consensus 95 ~~~liDtpG------~~~~~~------~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~-~~piivv~NK~D~~~~ 161 (259)
++.|+|||| +..+.. ....++..||++++|+|+++.-..-.-..+..+.+. ++|-++|.||.|....
T Consensus 121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ 200 (379)
T ss_pred EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh
Confidence 499999999 111111 223467889999999999864444445566666664 6899999999998752
Q ss_pred cccc----------chhhHHHHHhhhhccc----------cc----cccccccccCcceeEEeecCCC---CCCcccccC
Q psy6316 162 WNTM----------NRRDVRDIIKSQESSV----------QT----HKTVESARKGQEICIKIEPIPG---EAPKMFGRH 214 (259)
Q Consensus 162 ~~~~----------~~~~~~~~~~~~~~~~----------~~----~~i~~Sa~~g~gv~~~l~~i~~---~~~~~~~~~ 214 (259)
.... ........+++-.... +| ++|++||++|+|++++-++++. ..+|.|+..
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD 280 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence 1000 0011011111111111 13 4778999999999987666654 566777765
Q ss_pred C---cchhhHHHHhhhhhHHHHHHHHHhhcCchhhH
Q psy6316 215 F---DENDFLVSKISRQSIDACKDYFRDDLQKTDWQ 247 (259)
Q Consensus 215 ~---~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 247 (259)
. .+.+++..+++|+++ ++....+.++-
T Consensus 281 i~T~~s~e~l~~e~VRekl------Ld~~pqEVPY~ 310 (379)
T KOG1423|consen 281 IVTEESPEFLCSESVREKL------LDHLPQEVPYN 310 (379)
T ss_pred cccccCHHHHHHHHHHHHH------HhhCccccCcc
Confidence 5 478899999999988 66666655543
No 120
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1.3e-21 Score=152.68 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=98.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||++++....+.. ..++++... ...+ ... ..+.+|||||
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~----~~~~-----~~~----------------~~~~i~D~~G 70 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVE-----YKN----------------ISFTVWDVGG 70 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE----EEEE-----ECC----------------EEEEEEECCC
Confidence 3459999999999999999998655532 222222111 1000 001 1299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
++.+..++..+++.+|++|+|+|+++..+..+ ...+..+.. .+.|+++++||+|+.... ..+++...+....
T Consensus 71 q~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~l~l~~ 147 (181)
T PLN00223 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHS 147 (181)
T ss_pred CHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC---CHHHHHHHhCccc
Confidence 99999999999999999999999987544332 223333321 368999999999986421 2233333332111
Q ss_pred -ccccccccccccccCcceeEEeecC
Q psy6316 179 -SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 179 -~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+.++++||++|+|+.+.+..+
T Consensus 148 ~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 148 LRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred cCCCceEEEeccCCCCCCHHHHHHHH
Confidence 1113445679999999998866544
No 121
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=5.6e-22 Score=158.35 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=105.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|++..+...+.++++.++........ ....+ .+.+|||||+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~----~~~~~----------------~l~i~Dt~G~ 62 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE----PGVRI----------------KLQLWDTAGQ 62 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC----CCCEE----------------EEEEEeCCcc
Confidence 359999999999999999999887755444433322211111100 00001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.+...+..+++.+|++++|+|+++..+..... ++..+.. ...|+++|+||+|+.... ....+....+..
T Consensus 63 ~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~-----~v~~~~~~~~~~ 137 (211)
T cd04111 63 ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR-----QVTREEAEKLAK 137 (211)
T ss_pred hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc-----ccCHHHHHHHHH
Confidence 999999999999999999999998865554433 4444432 246788999999986421 111222333444
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+++.++++||++|.|+++++..+.
T Consensus 138 ~~~~~~~e~Sak~g~~v~e~f~~l~ 162 (211)
T cd04111 138 DLGMKYIETSARTGDNVEEAFELLT 162 (211)
T ss_pred HhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4567889999999999998665553
No 122
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.86 E-value=8.2e-22 Score=174.20 Aligned_cols=144 Identities=23% Similarity=0.263 Sum_probs=99.6
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHH
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
.+++|||||||.+|...+...+..+|++++|+|+..+...++.+.+..+...++ |+|+++||+|+... +.....++..
T Consensus 107 ~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~-~~~~~~~i~~ 185 (474)
T PRK05124 107 RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDY-SEEVFERIRE 185 (474)
T ss_pred cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccc-hhHHHHHHHH
Confidence 359999999999998888888899999999999999888877777777776664 68889999999732 2222333444
Q ss_pred HHhhhhccc----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHH
Q psy6316 173 IIKSQESSV----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQL 248 (259)
Q Consensus 173 ~~~~~~~~~----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 248 (259)
.+..+.... ..+++++||++|.|++..-. ..+|+.+ .. .+++|+. ++.+.+..+.+|
T Consensus 186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~----~~~wy~G------~t--------Ll~~L~~-i~~~~~~~~~p~ 246 (474)
T PRK05124 186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSE----SMPWYSG------PT--------LLEVLET-VDIQRVVDAQPF 246 (474)
T ss_pred HHHHHHHhcCCCCCceEEEEEeecCCCcccccc----cccccch------hh--------HHHHHhh-cCCCCCCCCCCc
Confidence 444333222 36788999999999987432 2344311 11 2222322 344556677899
Q ss_pred HHHHHHhhc
Q psy6316 249 MVDLKKVFQ 257 (259)
Q Consensus 249 ~~~i~~~~~ 257 (259)
+|+|+++|+
T Consensus 247 r~~I~~v~~ 255 (474)
T PRK05124 247 RFPVQYVNR 255 (474)
T ss_pred eeeEEEEEe
Confidence 999988754
No 123
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=6.4e-22 Score=151.18 Aligned_cols=152 Identities=24% Similarity=0.237 Sum_probs=101.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+......+............. .... .+.+|||||++
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------------~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-----GKRI----------------DLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-----CEEE----------------EEEEEECCchH
Confidence 59999999999999999999887654333222222111111100 0001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..+++.+|++++|+|+++..+..... ++..+.. .++|+++++||+|+.... .... +.+.......
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~-~~~~----~~~~~~~~~~ 135 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR-VVSK----SEAEEYAKSV 135 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-CCCH----HHHHHHHHHc
Confidence 99988888899999999999998765544433 3333332 368999999999987321 1111 2223333344
Q ss_pred cccccccccccCcceeEEeecC
Q psy6316 182 QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++.++++||++|.|+++++..+
T Consensus 136 ~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 136 GAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred CCEEEEEeCCCCCCHHHHHHHH
Confidence 6778899999999998865543
No 124
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=1e-21 Score=155.23 Aligned_cols=154 Identities=21% Similarity=0.191 Sum_probs=98.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+...+.++.............. ..+ .+.||||||..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~-----~~~----------------~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG-----RVY----------------DLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC-----EEE----------------EEEEEeCCCcc
Confidence 599999999999999999998877544433332221110000000 001 28899999965
Q ss_pred chH--------HHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH------hCCCCEEEEEecccccCcccccchhhH
Q psy6316 106 SFS--------NLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK------SKKTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 106 ~~~--------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~------~~~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
.+. ......++.+|++|+|+|+++..+..... ++..+. ..++|+++|+||+|+.... ....+
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~-~~~~~-- 137 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR-FAPRH-- 137 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccc-cccHH--
Confidence 431 11334578999999999998866555433 333332 2468999999999996421 11111
Q ss_pred HHHHhhhh-ccccccccccccccCcceeEEeecCCC
Q psy6316 171 RDIIKSQE-SSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 171 ~~~~~~~~-~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+.+. ..++++++++||++|.|+++++..+..
T Consensus 138 --~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 138 --VLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred --HHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 222222 234678899999999999997766654
No 125
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.86 E-value=7.1e-22 Score=153.06 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=103.7
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
|+++|.+|+|||||++++.+..+...+.++....+.. .... ....+ .+.+|||||++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~----------------~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSA-DVEV-----DGKPV----------------ELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeE-EEEE-----CCEEE----------------EEEEEECCCCcc
Confidence 6899999999999999999888755444333222211 0000 00011 289999999999
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCccccc-------chhhHHHHHh
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNTM-------NRRDVRDIIK 175 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~~-------~~~~~~~~~~ 175 (259)
+..++..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+....... ......+...
T Consensus 59 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 138 (174)
T smart00174 59 YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGE 138 (174)
T ss_pred cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHH
Confidence 988888899999999999999886555544 25555554 379999999999986421100 0001112223
Q ss_pred hhhccccc-cccccccccCcceeEEeecC
Q psy6316 176 SQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+....+. .++++||++|.|+++++..+
T Consensus 139 ~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 167 (174)
T smart00174 139 ALAKRIGAVKYLECSALTQEGVREVFEEA 167 (174)
T ss_pred HHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence 34444444 77899999999998866554
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=9.9e-22 Score=149.86 Aligned_cols=150 Identities=19% Similarity=0.142 Sum_probs=100.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..... ...+.+ ....... +....+.+|||||+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~----~~~~~~~---------------------~~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIG----FNVETVE---------------------YKNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcC----cceEEEE---------------------ECCEEEEEEECCCCh
Confidence 48999999999999999999886422 111111 1100000 001129999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhh-hc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ-ES 179 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~-~~ 179 (259)
.+...+..++..+|++++|+|+++..+... ..++..+. ..+.|+++++||+|+.... ..+++.+.+... ..
T Consensus 55 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~ 131 (158)
T cd00878 55 KIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKIL 131 (158)
T ss_pred hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhcc
Confidence 999999999999999999999987533332 22333222 3478999999999987422 233344433332 12
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...++++++||++|.|+++++..+.
T Consensus 132 ~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 132 GRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 2356788999999999988765543
No 127
>KOG0080|consensus
Probab=99.86 E-value=2.3e-22 Score=146.45 Aligned_cols=153 Identities=19% Similarity=0.124 Sum_probs=117.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+-++....+......+++.++......+...+.+ +.||||+|+
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~K---------------------laiWDTAGq 70 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLK---------------------LAIWDTAGQ 70 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEE---------------------EEEEeccch
Confidence 45999999999999999999999998887777887776655555443322 999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC----CCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK----KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~----~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++|+.+..++++.|.++|+|+|+++..+...++ |++.+.-. ++-.++|+||+|... +.. .-.+.-.+++.
T Consensus 71 ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~----V~reEG~kfAr 145 (209)
T KOG0080|consen 71 ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERV----VDREEGLKFAR 145 (209)
T ss_pred HhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-ccc----ccHHHHHHHHH
Confidence 999999999999999999999999887777766 44454432 233468999999752 222 22333344556
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++-++++||++.+|+...++++
T Consensus 146 ~h~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 146 KHRCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred hhCcEEEEcchhhhccHHHHHHHH
Confidence 667888999999999998765554
No 128
>KOG1144|consensus
Probab=99.86 E-value=7.6e-22 Score=173.84 Aligned_cols=181 Identities=60% Similarity=0.930 Sum_probs=145.0
Q ss_pred CCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCe
Q psy6316 17 EDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGL 96 (259)
Q Consensus 17 ~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (259)
+....+|+|.++|+|+.++|||-|+..+.+.++..++.++++..+|.+..+....+.....+...... .+....+
T Consensus 468 ~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~-----~~kvPg~ 542 (1064)
T KOG1144|consen 468 ESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKK-----RLKVPGL 542 (1064)
T ss_pred ccchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhh-----hcCCCee
Confidence 34568999999999999999999999999999999999999999999999988666555433322221 3444569
Q ss_pred EEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 97 LIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 97 ~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.+||||||+.|..++.+..+.||++|+|+|..+++.++..+.+..++..+.|+||++||+|.+..|.......+...+..
T Consensus 543 lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 543 LVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred EEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987654433323222221
Q ss_pred hh-------------------ccc--------------cccccccccccCcceeEEeec
Q psy6316 177 QE-------------------SSV--------------QTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 177 ~~-------------------~~~--------------~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.. ... -+.++|+||.+|+|+..++..
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~l 681 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLL 681 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHH
Confidence 11 000 245679999999999875433
No 129
>KOG0394|consensus
Probab=99.86 E-value=2.8e-22 Score=149.36 Aligned_cols=156 Identities=22% Similarity=0.195 Sum_probs=116.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|.+.|.+|+|||||+|++...++.+.+..+++.++-.....++.... .+++|||+|
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~v---------------------tlQiWDTAG 67 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSV---------------------TLQIWDTAG 67 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEE---------------------EEEEEeccc
Confidence 35699999999999999999999999988888888766544333332111 189999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHH-----HHHHh---CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l-----~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+++|.++...+++++|++++|+|++...+...++.| .+... ..-|+|+++||+|..... .+..-....+
T Consensus 68 QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~---~r~VS~~~Aq 144 (210)
T KOG0394|consen 68 QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK---SRQVSEKKAQ 144 (210)
T ss_pred HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc---cceeeHHHHH
Confidence 999999999999999999999999887666555433 33322 246899999999986432 1233333444
Q ss_pred hhh-ccccccccccccccCcceeEEeecC
Q psy6316 176 SQE-SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~-~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+. ...+++++++||+.+.++...+..+
T Consensus 145 ~WC~s~gnipyfEtSAK~~~NV~~AFe~i 173 (210)
T KOG0394|consen 145 TWCKSKGNIPYFETSAKEATNVDEAFEEI 173 (210)
T ss_pred HHHHhcCCceeEEecccccccHHHHHHHH
Confidence 443 4457889999999999998866554
No 130
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=156.25 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=102.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|.+..+.. ..++.+.+......... ...+ .+.||||||+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~-----~~~~----------------~l~l~Dt~G~ 72 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVG-----GKRL----------------KLTIWDTAGQ 72 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEEC-----CEEE----------------EEEEEECCCc
Confidence 459999999999999999998876532 22222221111111000 0001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
+.+..++..+++.+|++|+|+|+++..+..... +...+.. .+.|+++|+||+|+..... ...++ ...+.
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-i~~~~----~~~~~ 147 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD-VSREE----GMALA 147 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHH----HHHHH
Confidence 999999999999999999999998865555543 2223322 3578999999999864211 11122 22233
Q ss_pred ccccccccccccccCcceeEEeecCCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
...++.++++||++|.|+++++..+..
T Consensus 148 ~~~~~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 148 KEHGCLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 334567889999999999987766543
No 131
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=2.4e-21 Score=149.05 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=98.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|||||||+++|.+..+......... .. +.... ..+ ....+.+|||||+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~---~~~~~--------~~~-----------~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI---TIPAD--------VTP-----------ERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce---Eeeee--------ecC-----------CeEEEEEEeCCCch
Confidence 599999999999999999998876433211110 00 00000 000 01128999999998
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+...+..++..+|++++|+|++++.+.... .++..++. .+.|+++|+||+|+....... .....+......+
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~ 135 (166)
T cd01893 59 QDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA---GLEEEMLPIMNEF 135 (166)
T ss_pred hhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh---HHHHHHHHHHHHH
Confidence 8877778888999999999999887666553 24444543 368999999999997432110 1111121111111
Q ss_pred -c-ccccccccccCcceeEEeecC
Q psy6316 182 -Q-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 -~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+ ..++++||++|.|+++++..+
T Consensus 136 ~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 136 REIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred hcccEEEEeccccccCHHHHHHHH
Confidence 1 267799999999998865543
No 132
>PLN03108 Rab family protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=156.32 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=105.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+++|++..+...+..+++.++......... ..+ .+.+|||||+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~-----~~i----------------~l~l~Dt~G~ 65 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-----KPI----------------KLQIWDTAGQ 65 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC-----EEE----------------EEEEEeCCCc
Confidence 4699999999999999999998877654444443322211111110 001 1889999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++++||+|+... .... ....+++...
T Consensus 66 ~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~-~~~~----~~~~~~~~~~ 140 (210)
T PLN03108 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR-RAVS----TEEGEQFAKE 140 (210)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc-cCCC----HHHHHHHHHH
Confidence 99998888999999999999999876555543 34443332 36899999999998632 1111 2223333344
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++++++||++|.|+++.+.++
T Consensus 141 ~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 141 HGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHH
Confidence 56788999999999998866544
No 133
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=1.8e-21 Score=150.19 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=98.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++|.+..+.. +.++++.... ..+ +....+.+|||||+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~----~~~---------------------~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE----TVE---------------------YKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE----EEE---------------------ECCEEEEEEECCCCh
Confidence 38999999999999999998875432 2222221111 000 001128999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc-
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES- 179 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~- 179 (259)
.+...+..+++.+|++++|+|+++..+..+. .++..+.. .+.|+++|+||+|+... ...+++.+.+. ...
T Consensus 55 ~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~-~~~~ 130 (169)
T cd04158 55 KLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA---LSVEEMTELLS-LHKL 130 (169)
T ss_pred hcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC---CCHHHHHHHhC-Cccc
Confidence 9998999999999999999999875444332 33333332 24799999999998631 12233333321 111
Q ss_pred --cccccccccccccCcceeEEeecCC
Q psy6316 180 --SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 --~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+.++++||++|.|+++++..+.
T Consensus 131 ~~~~~~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 131 CCGRSWYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred cCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence 1124567899999999998766553
No 134
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=1.8e-21 Score=154.50 Aligned_cols=177 Identities=20% Similarity=0.181 Sum_probs=105.2
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc---CCCCCCcceeeccccccCcccccccccccc----------CCCCCCCCCCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV---QDGEAGGITQQIGATNVPADAIRENTKHVR----------GPGGEVGGPGPLE 92 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 92 (259)
+|+++|+.|+|||||+.+|.+... .....+.++...+................. .......++....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999975521 111111222222222211110000000000 0000000001111
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-CCHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-LEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~ 170 (259)
...+.||||||+++|...+...+..+|++++|+|++++ ...+..+.+..+...+. |+++++||+|+.... .....
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~---~~~~~ 158 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE---QALEN 158 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH---HHHHH
Confidence 23599999999999999888999999999999999874 44555666666665554 689999999997421 11222
Q ss_pred HHHHhhhhcc---ccccccccccccCcceeEEeecCCC
Q psy6316 171 RDIIKSQESS---VQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 171 ~~~~~~~~~~---~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+.++..... ..++++++||++|+|+++++..+..
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 2333333322 2467889999999999887665543
No 135
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.85 E-value=9.8e-22 Score=152.29 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=104.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+++++|.+|+|||||++++.+..+...+.++....+.. ....+. ..+ .+.+|||||+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~-----~~~----------------~~~i~Dt~G~~ 59 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSV-VVLVDG-----KPV----------------RLQLCDTAGQD 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECC-----EEE----------------EEEEEECCCCh
Confidence 59999999999999999998877655443332211110 011100 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccc-------cchhhHHHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNT-------MNRRDVRDII 174 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~-------~~~~~~~~~~ 174 (259)
.+...+..+++.+|++|+|+|+++..+.+.. .++..+.. .+.|+++++||+|+...... ..+....+..
T Consensus 60 ~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 139 (173)
T cd04130 60 EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRA 139 (173)
T ss_pred hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHH
Confidence 9988888899999999999999987665543 35555554 36899999999998642100 0011111223
Q ss_pred hhhhccccc-cccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+....+. .++++||++|.|++++++.+
T Consensus 140 ~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 140 KALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 333334444 78899999999998866543
No 136
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=2.3e-21 Score=151.70 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=100.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|||||||++++.+..+... .++... +... . ... ...+.+|||||+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~----~~~~---~--~~~----------------~~~~~~~D~~G~ 71 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHP----TSEE---L--AIG----------------NIKFTTFDLGGH 71 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCccc-CCcccc----ceEE---E--EEC----------------CEEEEEEECCCC
Confidence 5599999999999999999988755321 111111 1000 0 000 112899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
..+...+..++..+|++++|+|+++..+... ...+..+. ..+.|+++|+||+|+... ...+++.+.+.....
T Consensus 72 ~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~---~~~~~i~~~l~l~~~ 148 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA---ASEDELRYALGLTNT 148 (184)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC---CCHHHHHHHcCCCcc
Confidence 9999999999999999999999987533222 22333332 247899999999998632 234445544432211
Q ss_pred --------cccccccccccccCcceeEEeecCC
Q psy6316 180 --------SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 --------~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+.++++||++|+|+++.++.+.
T Consensus 149 ~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred cccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 1245688999999999988666553
No 137
>KOG0087|consensus
Probab=99.85 E-value=5.2e-22 Score=151.38 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=122.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+++|||-|+.++....+......+++.++...+..++....+ .+||||+||
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vk---------------------aqIWDTAGQ 73 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVK---------------------AQIWDTAGQ 73 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEE---------------------Eeeecccch
Confidence 35999999999999999999999998888888988887666655433221 899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC---CCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++|+.....++++|-++++|+|.+...+.+.. +|+.+++.. ++++++|+||+|+... +....+..+.+...
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-----raV~te~~k~~Ae~ 148 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-----RAVPTEDGKAFAEK 148 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-----cccchhhhHhHHHh
Confidence 99999999999999999999999988787764 488888874 6889999999999742 22223334445555
Q ss_pred ccccccccccccCcceeEEeec
Q psy6316 181 VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.+..++++||+.+.+++..+..
T Consensus 149 ~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087|consen 149 EGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred cCceEEEecccccccHHHHHHH
Confidence 5678889999999999875533
No 138
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.85 E-value=1.2e-21 Score=150.96 Aligned_cols=152 Identities=20% Similarity=0.170 Sum_probs=100.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++.+..+.....++.+..+. ..... ....+ .+.+|||||++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-----~~~~~----------------~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEI-----DGRQC----------------DLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEE-----CCEEE----------------EEEEEeCCCcc
Confidence 4999999999999999999988765443333221110 00000 00001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.|..++..+++.+|++++|+|.++..+..... +...+. ..+.|+++++||+|+.... ....++ ...+...
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~----~~~~~~~ 135 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR-QVSRED----GVSLSQQ 135 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC-ccCHHH----HHHHHHH
Confidence 99999999999999999999998754443322 233232 3468999999999986421 111122 2222233
Q ss_pred cc-ccccccccccCcceeEEeecCC
Q psy6316 181 VQ-THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~-~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
++ .+++++||++|.|+++++.++.
T Consensus 136 ~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 136 WGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHH
Confidence 33 5788999999999988665554
No 139
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=2e-21 Score=164.94 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=116.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+.+|+++|+||+|||||+|+|++.+. .+....+.++...-... .++....|.++||+|
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR------~Iv~~~aGTTRD~I~~~----------------~e~~~~~~~liDTAG 235 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEER------VIVSDIAGTTRDSIDIE----------------FERDGRKYVLIDTAG 235 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCce------EEecCCCCccccceeee----------------EEECCeEEEEEECCC
Confidence 45699999999999999999998775 35555544444432211 122233499999999
Q ss_pred Ccc----------hHHH-HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 HES----------FSNL-RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~~~----------~~~~-~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
... |... ....+..+|++++|+|++.+++.++...+..+.+.+.++++|+||||+... +....++...
T Consensus 236 iRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~-~~~~~~~~k~ 314 (444)
T COG1160 236 IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE-DEATMEEFKK 314 (444)
T ss_pred CCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc-hhhHHHHHHH
Confidence 332 2211 234568899999999999999999999999999999999999999999853 2234555666
Q ss_pred HHhhhhccccc-cccccccccCcceeEEeecC
Q psy6316 173 IIKSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.+.....++ +++++||++|.|+..+++.+
T Consensus 315 ~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i 346 (444)
T COG1160 315 KLRRKLPFLDFAPIVFISALTGQGLDKLFEAI 346 (444)
T ss_pred HHHHHhccccCCeEEEEEecCCCChHHHHHHH
Confidence 66666666655 56689999999998866554
No 140
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=1.2e-21 Score=151.74 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=103.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+..+...+.++....+.. ....... . + .+.+|||||+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~-----~-------------~---~~~i~Dt~G~~ 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGK-----Q-------------Y---LLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCE-----E-------------E---EEEEEeCCCcc
Confidence 59999999999999999999887765544443322211 1111100 0 0 17899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCcccccc-------hhhHHHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNTMN-------RRDVRDII 174 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~~~-------~~~~~~~~ 174 (259)
.+...+..+++.+|++++|+|.++..+..... ++..+.. .+.|+++++||+|+........ ........
T Consensus 60 ~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 139 (174)
T cd04135 60 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred cccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHH
Confidence 99888888899999999999998865555442 4444433 4789999999999864211000 00011222
Q ss_pred hhhhccccc-cccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
+......++ .++++||++|.|+++++..+
T Consensus 140 ~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 140 QKLAKEIGAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred HHHHHHcCCCEEEEecCCcCCCHHHHHHHH
Confidence 333333444 57789999999998866544
No 141
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=2.3e-21 Score=157.87 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=104.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+...+.+++.... ....... ... + .+.||||+|++
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~-~k~~~i~-----~~~-------------~---~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFH-RKLYSIR-----GEV-------------Y---QLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhE-EEEEEEC-----CEE-------------E---EEEEEECCCCh
Confidence 599999999999999999998887655444443111 0001000 000 1 28899999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh------------CCCCEEEEEecccccCcccccchhhHHH
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS------------KKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~------------~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
.|..++..++..+|++|+|+|+++..+.+... ++..+.. .+.|+++|+||+|+... .....+++.+
T Consensus 60 ~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~ 138 (247)
T cd04143 60 PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP-REVQRDEVEQ 138 (247)
T ss_pred hhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc-cccCHHHHHH
Confidence 99888888889999999999998865554433 3333322 36899999999998632 1122233332
Q ss_pred HHhhhhccccccccccccccCcceeEEeecCCC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+. ....+.++++||++|.|+++++..+..
T Consensus 139 ~~~---~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 139 LVG---GDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HHH---hcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222 122567899999999999997766644
No 142
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.85 E-value=2.1e-21 Score=169.13 Aligned_cols=199 Identities=23% Similarity=0.232 Sum_probs=120.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccC---CCCCCcceeeccccccCcccc-----ccccccccCCCCCCCCCCCCCCCCe
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQ---DGEAGGITQQIGATNVPADAI-----RENTKHVRGPGGEVGGPGPLEIPGL 96 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (259)
.+|+++|+.++|||||+.+|.+.... ....++++...+......... .+........+.. +........+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i 87 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNC--GSETELLRRV 87 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccc--ccccccccEE
Confidence 45999999999999999999654221 111123333332211111000 0000000000000 0000001249
Q ss_pred EEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-CHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHHHH
Q psy6316 97 LIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 97 ~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
+|||||||++|...+...+..+|++++|+|++++. ..++.+.+..+...+. |+++|+||+|+.... ......+.+
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~---~~~~~~~~i 164 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE---RALENYEQI 164 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch---hHHHHHHHH
Confidence 99999999999888888888999999999999876 6677777777777765 689999999997421 111112223
Q ss_pred hhhhcc---ccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHH
Q psy6316 175 KSQESS---VQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVD 251 (259)
Q Consensus 175 ~~~~~~---~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 251 (259)
..+... ...+++++||++|.|++. .++.+.+.++.+.++.+.+|+|+
T Consensus 165 ~~~l~~~~~~~~~ii~vSA~~g~gI~~------------------------------L~~~L~~~l~~~~~~~~~~~r~~ 214 (411)
T PRK04000 165 KEFVKGTVAENAPIIPVSALHKVNIDA------------------------------LIEAIEEEIPTPERDLDKPPRMY 214 (411)
T ss_pred HHHhccccCCCCeEEEEECCCCcCHHH------------------------------HHHHHHHhCCCCCCCCCCCceEE
Confidence 333221 246788999999999843 22223333455566678899999
Q ss_pred HHHhhcc
Q psy6316 252 LKKVFQI 258 (259)
Q Consensus 252 i~~~~~~ 258 (259)
|+++|+|
T Consensus 215 I~~~f~v 221 (411)
T PRK04000 215 VARSFDV 221 (411)
T ss_pred EEeeeee
Confidence 9998864
No 143
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.85 E-value=1.6e-21 Score=150.43 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=102.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++|++..+...+.++........ .... .... .+.+|||||++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~----------------~l~~~D~~g~~ 59 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT-VTVD-----GKQV----------------NLGLWDTAGQE 59 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE-EEEC-----CEEE----------------EEEEEeCCCcc
Confidence 499999999999999999998877444333332222111 1100 0011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccch------hhHHHHHh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMNR------RDVRDIIK 175 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~------~~~~~~~~ 175 (259)
.+.......++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+......... .-......
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~ 139 (171)
T cd00157 60 EYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGE 139 (171)
T ss_pred cccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHH
Confidence 8877777778999999999999875444432 345444443 5999999999998754321100 00112222
Q ss_pred hhhccccc-cccccccccCcceeEEeecC
Q psy6316 176 SQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
......++ .++++||++|.|+.+++..+
T Consensus 140 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 168 (171)
T cd00157 140 KLAKEIGAIGYMECSALTQEGVKEVFEEA 168 (171)
T ss_pred HHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence 33333344 78899999999998866544
No 144
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.85 E-value=2.4e-21 Score=148.35 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=99.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+++++...+.....++....+... ... ....+ .+.+|||||+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~----------------~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVL-----DGEDV----------------QLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEE-EEE-----CCEEE----------------EEEEEECCChh
Confidence 599999999999999999998776544333322111000 000 00001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.+...+..+++.+|++++|+|.+++.+.... .++..+.. .++|+++|+||+|+.... ...... .......
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~-~~~~~~----~~~~~~~ 134 (164)
T cd04139 60 DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR-QVSSEE----AANLARQ 134 (164)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc-ccCHHH----HHHHHHH
Confidence 9999999999999999999998765433222 23232222 579999999999986411 111111 2222333
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++.+++++||++|.|+++++..+
T Consensus 135 ~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 135 WGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred hCCeEEEeeCCCCCCHHHHHHHH
Confidence 45788999999999998865443
No 145
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=5.2e-21 Score=151.08 Aligned_cols=168 Identities=19% Similarity=0.204 Sum_probs=106.3
Q ss_pred hhhhhhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCC
Q psy6316 3 AVFNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82 (259)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
+.|.++.....+.+.. ..++|+++|++|+|||||+|+|++..+........+.+....... .+
T Consensus 7 ~~~~~~~~~~~~~~~~----~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-------------~~ 69 (196)
T PRK00454 7 AEFVTSAPKLEQLPPD----DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-------------VN 69 (196)
T ss_pred HHHHHhhccHhhCCCC----CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-------------cC
Confidence 4566666555544443 246799999999999999999998653222111111111000000 00
Q ss_pred CCCCCCCCCCCCCeEEEeCCCCc----------chHHHHHhhcc---CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE
Q psy6316 83 GEVGGPGPLEIPGLLIIDTPGHE----------SFSNLRNRGSS---LCDIAILVVDIMHGLEPQTIESINILKSKKTPF 149 (259)
Q Consensus 83 ~~~~~~~~~~~~~~~liDtpG~~----------~~~~~~~~~~~---~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi 149 (259)
.++.||||||+. .+......++. .++++++|+|++.+....+..+...+...+.|+
T Consensus 70 -----------~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~ 138 (196)
T PRK00454 70 -----------DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPV 138 (196)
T ss_pred -----------CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcE
Confidence 139999999952 33334444444 457889999988877766666667777788999
Q ss_pred EEEEecccccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEee
Q psy6316 150 VVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 150 ivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
++++||+|+.... ..+.....+.+........++++||++|.|+++++.
T Consensus 139 iiv~nK~Dl~~~~---~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~ 187 (196)
T PRK00454 139 LIVLTKADKLKKG---ERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRA 187 (196)
T ss_pred EEEEECcccCCHH---HHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHH
Confidence 9999999997421 222333334444333356888999999999877543
No 146
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.85 E-value=4e-21 Score=148.00 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=98.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|||||||+++|.+. +...+.++++ ....... .. ...+.+|||||+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g----~~~~~~~-----~~----------------~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVG----FTPTKLR-----LD----------------KYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCccc----ceEEEEE-----EC----------------CEEEEEEECCCcH
Confidence 3899999999999999999876 3222222222 1111100 00 1128999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHH--hhhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDII--KSQE 178 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~--~~~~ 178 (259)
.+..++..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ...++.+.+ ..+.
T Consensus 55 ~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~~~l~~~~ 131 (167)
T cd04161 55 NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL---LGADVIEYLSLEKLV 131 (167)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC---CHHHHHHhcCccccc
Confidence 999999999999999999999987654443 334444432 368999999999987432 222333322 2222
Q ss_pred c--cccccccccccccC------cceeEEeecC
Q psy6316 179 S--SVQTHKTVESARKG------QEICIKIEPI 203 (259)
Q Consensus 179 ~--~~~~~~i~~Sa~~g------~gv~~~l~~i 203 (259)
. ...+.++++||++| .|+.+.++++
T Consensus 132 ~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl 164 (167)
T cd04161 132 NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164 (167)
T ss_pred CCCCceEEEEEeEceeCCCCccccCHHHHHHHH
Confidence 2 12456778999998 6777655444
No 147
>KOG0079|consensus
Probab=99.85 E-value=1.2e-21 Score=140.74 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=121.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+.+|+|.+|+|||||+-++....+...+..+++.+.-..+.+....+.. +.||||+|++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~Vk---------------------LqIwDtAGqE 68 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVK---------------------LQIWDTAGQE 68 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEE---------------------EEEeecccHH
Confidence 3789999999999999999999888888778887777666665432222 9999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
.|..+...+++..+++++|+|++++.+..+ .+|+..++.. .+|-++|+||.|...- +-........++...+
T Consensus 69 rFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R-----rvV~t~dAr~~A~~mg 143 (198)
T KOG0079|consen 69 RFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER-----RVVDTEDARAFALQMG 143 (198)
T ss_pred HHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc-----eeeehHHHHHHHHhcC
Confidence 999999999999999999999999888776 4577777764 5788999999998741 2223344566666778
Q ss_pred ccccccccccCcceeEEee
Q psy6316 183 THKTVESARKGQEICIKIE 201 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~ 201 (259)
+..|++||+...+++..+.
T Consensus 144 ie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 144 IELFETSAKENENVEAMFH 162 (198)
T ss_pred chheehhhhhcccchHHHH
Confidence 9999999999999977443
No 148
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.85 E-value=1.8e-21 Score=178.43 Aligned_cols=146 Identities=20% Similarity=0.230 Sum_probs=101.0
Q ss_pred CCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhH
Q psy6316 92 EIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 92 ~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~ 170 (259)
...++.|+|||||++|...+...+..+|++++|+|+..+...++.+++..+...++ ++++++||+|+.. ++....+.+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~~~~~~i 180 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQEVFDEI 180 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chhHHHHHH
Confidence 33459999999999998888888999999999999999888888888877777764 6888999999873 111122333
Q ss_pred HHHHhhhhcccc---ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhH
Q psy6316 171 RDIIKSQESSVQ---THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQ 247 (259)
Q Consensus 171 ~~~~~~~~~~~~---~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 247 (259)
...+..+....+ .+++++||++|.|+.+.- ...+|+.+ . ..+++++. +..+.+..+.|
T Consensus 181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~----~~~~wy~g------~--------tL~~~l~~-~~~~~~~~~~p 241 (632)
T PRK05506 181 VADYRAFAAKLGLHDVTFIPISALKGDNVVTRS----ARMPWYEG------P--------SLLEHLET-VEIASDRNLKD 241 (632)
T ss_pred HHHHHHHHHHcCCCCccEEEEecccCCCccccc----cCCCcccH------h--------HHHHHHhc-CCCCCCcCCCC
Confidence 344443333333 468899999999998633 22344321 1 12233333 34455557889
Q ss_pred HHHHHHHhhc
Q psy6316 248 LMVDLKKVFQ 257 (259)
Q Consensus 248 ~~~~i~~~~~ 257 (259)
|+|+|+++|+
T Consensus 242 ~r~~i~~v~~ 251 (632)
T PRK05506 242 FRFPVQYVNR 251 (632)
T ss_pred ceeeEEEEEe
Confidence 9999998864
No 149
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=5e-21 Score=149.47 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=96.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||++++....+.. +.++.+..+ .... ... ..+.+|||||+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~----~~~~-----~~~----------------~~~~l~D~~G~ 71 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV----ETVE-----YKN----------------LKFTMWDVGGQ 71 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce----EEEE-----ECC----------------EEEEEEECCCC
Confidence 459999999999999999997655532 212222111 0000 001 12999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHH-Hh---CCCCEEEEEecccccCcccccchhhHHHHHhhh-h
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINIL-KS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ-E 178 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~-~ 178 (259)
+.+...+..+++.+|++|+|+|+++..+..+ ...+..+ .. .+.|+++|+||.|+.... ...++...+... .
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~l~~~~~ 148 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM---STTEVTEKLGLHSV 148 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC---CHHHHHHHhCCCcc
Confidence 9999999999999999999999987533332 2223332 22 358999999999986321 122332322211 1
Q ss_pred ccccccccccccccCcceeEEeecC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+.++++||++|.|+++++..+
T Consensus 149 ~~~~~~~~~~Sa~tg~gv~e~~~~l 173 (182)
T PTZ00133 149 RQRNWYIQGCCATTAQGLYEGLDWL 173 (182)
T ss_pred cCCcEEEEeeeCCCCCCHHHHHHHH
Confidence 1223455689999999998865543
No 150
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.85 E-value=3.7e-21 Score=168.37 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=129.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc---CCCCCCcceeeccccccCcccccccccccc--CCCC--------CCCCCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV---QDGEAGGITQQIGATNVPADAIRENTKHVR--GPGG--------EVGGPGP 90 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~ 90 (259)
..+|+++|+.++|||||+.+|.+... .+...++++.+.|+.......-........ ..+. .......
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 45699999999999999999987543 333445566666655442100000000000 0000 0000001
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-CCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchh
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-LEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~ 168 (259)
.....+.|+|||||++|.+.+...+..+|++++|+|+.++ ...+..+++..+...+++ +|+++||+|+.... ...
T Consensus 114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~---~~~ 190 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA---QAQ 190 (460)
T ss_pred cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHH---HHH
Confidence 1123599999999999999999999999999999999886 677888888888777765 78999999997321 112
Q ss_pred hHHHHHhhhhc---cccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchh
Q psy6316 169 DVRDIIKSQES---SVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTD 245 (259)
Q Consensus 169 ~~~~~~~~~~~---~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 245 (259)
+..+.+..+.. ....+++++||++|.|++. .++.+.+.++.+.++.+
T Consensus 191 ~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~------------------------------Ll~~L~~~lp~~~r~~~ 240 (460)
T PTZ00327 191 DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDV------------------------------VLEYICTQIPIPKRDLT 240 (460)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHH------------------------------HHHHHHhhCCCCCCCCC
Confidence 22223333221 1356889999999998743 33334444555666667
Q ss_pred hHHHHHHHHhhcc
Q psy6316 246 WQLMVDLKKVFQI 258 (259)
Q Consensus 246 ~~~~~~i~~~~~~ 258 (259)
.+|+|+|+++|+|
T Consensus 241 ~p~r~~Idr~F~V 253 (460)
T PTZ00327 241 SPPRMIVIRSFDV 253 (460)
T ss_pred CCcEEEEEEEEee
Confidence 7888888877754
No 151
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=3.1e-21 Score=152.71 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=102.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||++++++..+...+..+... .......... ..+ .+.||||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-----~~~----------------~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGG-----VSL----------------TLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECC-----EEE----------------EEEEEECCCch
Confidence 3899999999999999999988765433222211 1000000000 001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.+..++..++..+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+............. +.....
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~---~~~~~~ 135 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDAL---STVELD 135 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHH---HHHHhh
Confidence 99888888999999999999998755544332 2223322 478999999999986432111111111 111123
Q ss_pred ccccccccccccCcceeEEeecCCCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
++..++++||++|.|+++++..+...
T Consensus 136 ~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 136 WNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 34577899999999999987776543
No 152
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=5.3e-21 Score=147.52 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=91.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|||||||+|+|.+....... ...++..+... .+...+ ...+.||||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-------~~~~t~~~~~~-----~~~~~~----------~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-------YPFTTLVPNLG-----VVRVDD----------GRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-------CCccccCCcce-----EEEcCC----------CCeEEEEecCccc
Confidence 5999999999999999999875432111 00111111000 000000 0139999999963
Q ss_pred c-------hHHHHHhhccCCCeEEEEEeCCCC-CCHHHHH-HHHHHHh-----CCCCEEEEEecccccCcccccchhhHH
Q psy6316 106 S-------FSNLRNRGSSLCDIAILVVDIMHG-LEPQTIE-SINILKS-----KKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 106 ~-------~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~-~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
. +...+...+..+|++++|+|+++. .+..... +...+.. .++|+++|+||+|+... ....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~~ 133 (170)
T cd01898 60 EGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EELF 133 (170)
T ss_pred CcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhhH
Confidence 2 222333445679999999999876 3444433 4444433 36899999999998642 2222
Q ss_pred HHHhhhhcc-ccccccccccccCcceeEEeecC
Q psy6316 172 DIIKSQESS-VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 172 ~~~~~~~~~-~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+...... ...+++++||++|.|+++++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i 166 (170)
T cd01898 134 ELLKELLKELWGKPVFPISALTGEGLDELLRKL 166 (170)
T ss_pred HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHH
Confidence 223333333 35678899999999998865543
No 153
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.84 E-value=6.1e-21 Score=144.92 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=99.0
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
|+++|++|||||||+++|.+..+...+.++.+.... .+.. ..+ .+.+|||||+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~----~~~~-----~~~----------------~~~~~D~~g~~~ 56 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR----KVTK-----GNV----------------TLKVWDLGGQPR 56 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE----EEEE-----CCE----------------EEEEEECCCCHh
Confidence 899999999999999999988765444333322111 0000 001 299999999999
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHH-HHHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh-hhcc
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQ-TIESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS-QESS 180 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~-~~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~ 180 (259)
+...+..+++.+|++++|+|+++..... ...++..+.. .++|+++|+||+|+.... ...+....+.. ....
T Consensus 57 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~ 133 (159)
T cd04159 57 FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITD 133 (159)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccC
Confidence 9999999999999999999997643322 1233333322 468999999999986321 11222222211 1112
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..++++++||++|.|+++++..+
T Consensus 134 ~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 134 REVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred CceEEEEEEeccCCChHHHHHHH
Confidence 24577899999999998866544
No 154
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.84 E-value=5.8e-21 Score=152.86 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=106.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++.+..+...+.+++...+.. ....+. ..+ .+.||||+|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~~-----~~v----------------~L~iwDt~G~ 59 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEIDK-----RRI----------------ELNMWDTSGS 59 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEECC-----EEE----------------EEEEEeCCCc
Confidence 359999999999999999999888766655555433321 011100 011 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-H-HHHHHHh--CCCCEEEEEecccccCcccccc-------hhhHHHH
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-E-SINILKS--KKTPFVVALNKIDRLYNWNTMN-------RRDVRDI 173 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~-------~~~~~~~ 173 (259)
+.|..++..+++.+|++|+|+|.++..+.... . |...+.. .+.|+++|+||+|+........ .....+.
T Consensus 60 e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~ 139 (222)
T cd04173 60 SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQ 139 (222)
T ss_pred HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHH
Confidence 99999999999999999999999987666554 2 3333333 4689999999999864210000 0011223
Q ss_pred Hhhhhccccc-cccccccccCcc-eeEEeecC
Q psy6316 174 IKSQESSVQT-HKTVESARKGQE-ICIKIEPI 203 (259)
Q Consensus 174 ~~~~~~~~~~-~~i~~Sa~~g~g-v~~~l~~i 203 (259)
.+.+....+. .++++||+++++ +.++|...
T Consensus 140 g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 140 GTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 3444445564 788999999885 88765443
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=2.1e-21 Score=147.83 Aligned_cols=143 Identities=25% Similarity=0.241 Sum_probs=92.2
Q ss_pred EEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcchH
Q psy6316 29 VLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFS 108 (259)
Q Consensus 29 v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 108 (259)
++|.+|+|||||+|++.+........++.+ ........ .+....+.+|||||+..+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t-------~~~~~~~~----------------~~~~~~~~liDtpG~~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVT-------VEKKEGRF----------------KLGGKEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcc-------cccceEEE----------------eeCCeEEEEEECCCccccC
Confidence 589999999999999988754322221111 11110000 0011139999999987654
Q ss_pred H------HHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 109 N------LRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 109 ~------~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
. .+..++ ..+|++++|+|+++. .....++..+...++|+++|+||+|+.... ......+.+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~------~~~~~~~~~~~~ 129 (158)
T cd01879 58 PYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKR------GIKIDLDKLSEL 129 (158)
T ss_pred CCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccc------cchhhHHHHHHh
Confidence 3 234444 499999999999763 233455666677889999999999997432 111122333344
Q ss_pred ccccccccccccCcceeEEeec
Q psy6316 181 VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
++.+++++||++|.|+..++..
T Consensus 130 ~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 130 LGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred hCCCeEEEEccCCCCHHHHHHH
Confidence 4678899999999999875443
No 156
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.84 E-value=4.2e-21 Score=154.35 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=96.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccC-CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQ-DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+|+++|.+|+|||||++++....+. ..+..+.+.+....+..+.. .. ..+.+|||||+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-----~~----------------~~l~i~Dt~G~ 60 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-----EE----------------STLVVIDHWEQ 60 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-----EE----------------EEEEEEeCCCc
Confidence 5999999999999999999876664 22222222111111111110 00 12899999998
Q ss_pred cchHHHHHhhcc-CCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 105 ESFSNLRNRGSS-LCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 105 ~~~~~~~~~~~~-~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
+. .....++. .+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ... .+..+.+.
T Consensus 61 ~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~-~v~----~~~~~~~a 133 (221)
T cd04148 61 EM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR-EVS----VQEGRACA 133 (221)
T ss_pred ch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc-eec----HHHHHHHH
Confidence 83 22334556 89999999999886554433 34444443 368999999999986421 111 11122333
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...++.++++||++|.|++++++.+.
T Consensus 134 ~~~~~~~~e~SA~~~~gv~~l~~~l~ 159 (221)
T cd04148 134 VVFDCKFIETSAGLQHNVDELLEGIV 159 (221)
T ss_pred HHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 44467788999999999998766553
No 157
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=2.2e-21 Score=150.39 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=101.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|++|+|||||++++.+..+...+.+++...+.. ...... ..+ .+.+|||||+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~-----~~~----------------~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDG-----KQV----------------ELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECC-----EEE----------------EEEEEeCCCc
Confidence 469999999999999999999887755443333322210 000000 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccccc-------hhhHHHH
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNTMN-------RRDVRDI 173 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~~~-------~~~~~~~ 173 (259)
+.+...+..++..+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+...+.... .......
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~ 139 (175)
T cd01870 60 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 139 (175)
T ss_pred hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHH
Confidence 99888877888999999999999875444333 24444443 4789999999999864211000 0000111
Q ss_pred Hhhhhcccc-ccccccccccCcceeEEeecC
Q psy6316 174 IKSQESSVQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 174 ~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++....+ +.++++||++|.|+++++..+
T Consensus 140 ~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 170 (175)
T cd01870 140 GRDMANKIGAFGYMECSAKTKEGVREVFEMA 170 (175)
T ss_pred HHHHHHHcCCcEEEEeccccCcCHHHHHHHH
Confidence 222222223 467899999999998876554
No 158
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.84 E-value=4.4e-21 Score=150.82 Aligned_cols=153 Identities=19% Similarity=0.156 Sum_probs=100.6
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|++|+|||||+++|.+..+.. +.++.....+ .. ... ...+.+|||
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~----~i-----~~~----------------~~~~~l~D~ 70 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE----EL-----TIG----------------NIKFKTFDL 70 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceE----EE-----EEC----------------CEEEEEEEC
Confidence 345679999999999999999998776532 1111111100 00 000 012899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHH-HHHHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQ-TIESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~-~~~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||+..+...+..++..+|++++|+|+++..+.. ....+..+. ..+.|+++++||+|+... ...+++.+.+..
T Consensus 71 ~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~---~~~~~~~~~~~~ 147 (190)
T cd00879 71 GGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA---VSEEELRQALGL 147 (190)
T ss_pred CCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC---cCHHHHHHHhCc
Confidence 999999888889999999999999998653322 222333332 246899999999998632 223444444432
Q ss_pred hh------------ccccccccccccccCcceeEEeecC
Q psy6316 177 QE------------SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~------------~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.. ....+.++++||++|+|+++.+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l 186 (190)
T cd00879 148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred ccccccccccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence 11 1123567899999999998866554
No 159
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.84 E-value=2.5e-21 Score=145.10 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=86.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+|+|.+..+. +..+. .. .+. -.+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~---------~~---------------------~~~---~~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ---------AV---------------------EYN---DGAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccce---------eE---------------------EEc---CeeecCchhh
Confidence 5999999999999999999876531 00000 00 010 3689999962
Q ss_pred ----chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 ----SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ----~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+.......++.+|++++|+|++++.+.....++.. ...|+++|+||+|+... ... .+..+++....
T Consensus 47 ~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~----~~~~~~~~~~~ 117 (142)
T TIGR02528 47 VENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA--DVD----IERAKELLETA 117 (142)
T ss_pred hhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc--ccC----HHHHHHHHHHc
Confidence 222222235789999999999988776555444332 24599999999998631 111 12222222223
Q ss_pred cc-cccccccccCcceeEEeecC
Q psy6316 182 QT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
+. +++++||++|.|+++++..+
T Consensus 118 ~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 118 GAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCCcEEEEecCCCCCHHHHHHHH
Confidence 33 67899999999998766543
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=4.7e-21 Score=168.92 Aligned_cols=157 Identities=18% Similarity=0.269 Sum_probs=106.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+|+|++.... +......++........ ......+.+|||||
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~------~~~~~~gtt~~~~~~~~----------------~~~~~~~~liDT~G 229 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERV------IVSDIAGTTRDSIDIPF----------------ERNGKKYLLIDTAG 229 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCee------ecCCCCCceECcEeEEE----------------EECCcEEEEEECCC
Confidence 456999999999999999999976532 11111111111110000 00111399999999
Q ss_pred CcchHHH-----------HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 HESFSNL-----------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~~~~~~~-----------~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+.++... ...+++.+|++|+|+|++++.+.++..++..+...+.|+++|+||+|+.. .....++...
T Consensus 230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~--~~~~~~~~~~ 307 (429)
T TIGR03594 230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK--DEKTREEFKK 307 (429)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC--CHHHHHHHHH
Confidence 6443211 13467899999999999999999999998888888999999999999972 1112334444
Q ss_pred HHhhhhccc-cccccccccccCcceeEEeecCC
Q psy6316 173 IIKSQESSV-QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 173 ~~~~~~~~~-~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+....... ..+++++||++|.|+.+++..+.
T Consensus 308 ~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 308 ELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred HHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 444333332 36788999999999998665553
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=4.4e-21 Score=145.75 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=95.6
Q ss_pred EEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcch
Q psy6316 28 CVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESF 107 (259)
Q Consensus 28 ~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 107 (259)
+++|.+|+|||||+|+|++...... .....++....... . ......+.+|||||+..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~------~~~~~~t~~~~~~~-----~-----------~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV------EDTPGVTRDRIYGE-----A-----------EWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee------cCCCCceeCceeEE-----E-----------EECCeEEEEEECCCCCCc
Confidence 5899999999999999987643210 00111111100000 0 011123999999998775
Q ss_pred HH--------HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 108 SN--------LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 108 ~~--------~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
.. .+...++.+|++++|+|+.++.+..+..+...++..+.|+++|+||+|+... ......+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~~~~~~~~--- 129 (157)
T cd01894 59 DEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE------EDEAAEFYS--- 129 (157)
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh------HHHHHHHHh---
Confidence 43 3345678899999999998877777777778888888999999999999742 111122221
Q ss_pred cccc-cccccccccCcceeEEeecC
Q psy6316 180 SVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+. +++++||++|.|+++++..+
T Consensus 130 -~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 130 -LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred -cCCCCeEEEecccCCCHHHHHHHH
Confidence 223 67899999999998866544
No 162
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.84 E-value=2e-21 Score=149.29 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=95.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+++++...+...+.++...... ..... ....+ .+.+|||||+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-----~~~~~----------------~~~i~D~~g~~ 58 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTI-----DGEQV----------------SLEILDTAGQQ 58 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEE-----CCEEE----------------EEEEEECCCCc
Confidence 4899999999999999999876654333232211110 00000 00001 28899999988
Q ss_pred c-hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH-----hCCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 106 S-FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK-----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 106 ~-~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~-----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
. +...+..+++.+|++++|+|+++..+..... ++..+. ..+.|+++|+||+|+.... .... +....+.
T Consensus 59 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~v~~----~~~~~~~ 133 (165)
T cd04146 59 QADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR-QVST----EEGEKLA 133 (165)
T ss_pred ccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhC-ccCH----HHHHHHH
Confidence 5 3445667889999999999998865555433 333333 2378999999999985321 1111 1222233
Q ss_pred ccccccccccccccCc-ceeEEeecC
Q psy6316 179 SSVQTHKTVESARKGQ-EICIKIEPI 203 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~-gv~~~l~~i 203 (259)
...+.+++++||++|. |+++++..+
T Consensus 134 ~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 134 SELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred HHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 3345678899999995 888866544
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.4e-20 Score=167.20 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=104.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+|+|++.... .......++........ .+....+.||||||
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~------~~s~~~gtT~d~~~~~~----------------~~~~~~~~l~DTaG 268 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERS------VVDDVAGTTVDPVDSLI----------------ELGGKTWRFVDTAG 268 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcc------cccCCCCccCCcceEEE----------------EECCEEEEEEECCC
Confidence 467999999999999999999987642 11111112221111000 01111289999999
Q ss_pred Cc----------chHHHH-HhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 HE----------SFSNLR-NRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~~----------~~~~~~-~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
.. .|.... ..+++.+|++++|+|++++.+.++..++..+...++|+|+|+||+|+.... .......
T Consensus 269 ~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~---~~~~~~~ 345 (472)
T PRK03003 269 LRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED---RRYYLER 345 (472)
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh---HHHHHHH
Confidence 52 222222 235689999999999999999999888888888899999999999997421 1122223
Q ss_pred HHhhhhcc-ccccccccccccCcceeEEeecCCC
Q psy6316 173 IIKSQESS-VQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 173 ~~~~~~~~-~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+...... ...+++++||++|.|+++++..+..
T Consensus 346 ~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 346 EIDRELAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred HHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 33332222 2356788999999999987766643
No 164
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=2e-20 Score=150.14 Aligned_cols=170 Identities=21% Similarity=0.186 Sum_probs=105.9
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcce--------eecccccc----CccccccccccccCCCCCC----CCCCC
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGIT--------QQIGATNV----PADAIRENTKHVRGPGGEV----GGPGP 90 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~ 90 (259)
|+++|+.++|||||+++|....+..+...... ...|.+.. ...... ....+.+..... .....
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDS-DGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCC-CCceecCCCCccccccceeee
Confidence 89999999999999999987666543321110 00011100 000000 000000000000 00011
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhcc--CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchh
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSS--LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~--~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
.....++|+|||||.+|.......+. .+|++++|+|+..+...++.+++..+...++|+++|+||+|+.... ...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~---~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPAN---ILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHH---HHH
Confidence 22335999999999999888777764 7999999999999999999999999999999999999999986321 222
Q ss_pred hHHHHHhhhhcc--------------------------ccccccccccccCcceeEEe
Q psy6316 169 DVRDIIKSQESS--------------------------VQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 169 ~~~~~~~~~~~~--------------------------~~~~~i~~Sa~~g~gv~~~l 200 (259)
.....+...... ...+++.+||.+|+|++.+.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHH
Confidence 333333322221 12366788999999987744
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.84 E-value=7.8e-21 Score=171.86 Aligned_cols=107 Identities=29% Similarity=0.395 Sum_probs=81.9
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++|||||||.+|...+..+++.+|++|+|+|++++.+.++...+..+...+.|+++|+||+|+... ..+.....+.
T Consensus 72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~----~~~~~~~el~ 147 (595)
T TIGR01393 72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSA----DPERVKKEIE 147 (595)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCcc----CHHHHHHHHH
Confidence 899999999999999999999999999999999988888887777777788999999999998632 1222223333
Q ss_pred hhhccccccccccccccCcceeEEeecCCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.........++++||++|.|+++++..+...
T Consensus 148 ~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 148 EVIGLDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred HHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 3222111246899999999998866655443
No 166
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.84 E-value=1.5e-20 Score=150.98 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=76.5
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCC-CCEEEEEecccccCc-cc
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKK-TPFVVALNKIDRLYN-WN 163 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~-~piivv~NK~D~~~~-~~ 163 (259)
...+.+|||||+.+|...+...++.+|++++|+|++++ ...+..+.+......+ .|+++++||+|+... +.
T Consensus 76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccccccc
Confidence 33599999999998888888888999999999999873 3445566666666666 678999999999732 11
Q ss_pred ccchhhHHHHHhhhhccc-----cccccccccccCcceeE
Q psy6316 164 TMNRRDVRDIIKSQESSV-----QTHKTVESARKGQEICI 198 (259)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~ 198 (259)
......+.+.++...... +++++++||++|.|+.+
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 122334444444333332 36789999999999985
No 167
>KOG0093|consensus
Probab=99.84 E-value=5.9e-21 Score=137.07 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=117.4
Q ss_pred cCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCC
Q psy6316 14 ENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEI 93 (259)
Q Consensus 14 ~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (259)
..++.++-|- ++.++|.+.+|||||+.+.++..+.....++++.+....+.- .....+
T Consensus 13 s~dqnFDymf--KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvy-----r~~kRi--------------- 70 (193)
T KOG0093|consen 13 SIDQNFDYMF--KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVY-----RSDKRI--------------- 70 (193)
T ss_pred ccccccccee--eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEee-----ecccEE---------------
Confidence 4455554443 799999999999999999999988766555555443322111 111111
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH---hCCCCEEEEEecccccCcccccchhh
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK---SKKTPFVVALNKIDRLYNWNTMNRRD 169 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~---~~~~piivv~NK~D~~~~~~~~~~~~ 169 (259)
++++|||+|++.|+.....++++++++|+++|.++..+....+ +.-+++ ..+.|+|+|.||||+. ++...
T Consensus 71 -klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd-~eRvi---- 144 (193)
T KOG0093|consen 71 -KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD-SERVI---- 144 (193)
T ss_pred -EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc-cceee----
Confidence 2999999999999999999999999999999999876665544 444444 3589999999999986 32222
Q ss_pred HHHHHhhhhccccccccccccccCcceeEEeec
Q psy6316 170 VRDIIKSQESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+....+...+++.++++||+.+-++..++.+
T Consensus 145 s~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 145 SHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred eHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 234455566677899999999999888775543
No 168
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.84 E-value=4.7e-20 Score=145.57 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=104.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+++|||||++++.+..+...+.++++..+................+ .+.||||+|++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~----------------~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTF----------------FVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEE----------------EEEEEecCCch
Confidence 59999999999999999999988876665555533321111110000000011 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----------------------CCCCEEEEEecccccCcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----------------------KKTPFVVALNKIDRLYNW 162 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----------------------~~~piivv~NK~D~~~~~ 162 (259)
.|..++..+++.+|++|+|+|.++..+..... |+..+.. .+.|+++|+||+|+...
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~- 144 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE- 144 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-
Confidence 99999999999999999999999987766654 5555533 25899999999998632
Q ss_pred cccchhhHHHHHhhhhccccccccccccccCcce
Q psy6316 163 NTMNRRDVRDIIKSQESSVQTHKTVESARKGQEI 196 (259)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv 196 (259)
..............++..++.+.+..+|..+..+
T Consensus 145 r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAEEINLNCTNGRLL 178 (202)
T ss_pred cccchHHHhhHhhhHHHhcCCceEEEecCCcccc
Confidence 2222233333344556666777777777766544
No 169
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=1.2e-20 Score=166.04 Aligned_cols=145 Identities=25% Similarity=0.241 Sum_probs=96.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++.... +......++......... +....+.+|||||+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a------~v~~~~gtT~d~~~~~i~----------------~~g~~i~l~DT~G~ 273 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERA------IVTDIAGTTRDVIEEHIN----------------LDGIPLRLIDTAGI 273 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc------ccCCCCCcccccEEEEEE----------------ECCeEEEEEeCCCC
Confidence 56999999999999999999876532 111111122211111000 01113999999997
Q ss_pred cchHHH--------HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFSNL--------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~~~--------~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.++... ...++..+|++++|+|++++.+..+...+.. ..+.|+++|+||+|+.... ...
T Consensus 274 ~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~------~~~----- 340 (449)
T PRK05291 274 RETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEI------DLE----- 340 (449)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccc------hhh-----
Confidence 654322 2346789999999999988777666555554 4578999999999997321 111
Q ss_pred hhccccccccccccccCcceeEEeecCCCC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.....+++++||++|.|+++++..+...
T Consensus 341 --~~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 341 --EENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred --hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 2234577899999999999977766443
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=2.2e-20 Score=144.10 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=98.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+.+|+++|.+|+|||||+|+|++....... ....++....... . .....++.+|||||
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~------~~~~~~~~~~~~~-----~-----------~~~~~~~~iiDtpG 59 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS------DIAGTTRDSIDVP-----F-----------EYDGKKYTLIDTAG 59 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc------CCCCCccCceeeE-----E-----------EECCeeEEEEECCC
Confidence 356999999999999999999876532111 1111111100000 0 01111389999999
Q ss_pred CcchH-----------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 HESFS-----------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~~~~~-----------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+.... ......+..+|++++|+|++++.+.....++..+...+.|+++++||+|+.... ....+...+
T Consensus 60 ~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~ 138 (174)
T cd01895 60 IRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-SKTMKEFKK 138 (174)
T ss_pred CccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-HHHHHHHHH
Confidence 64321 112235678999999999998878777777777777889999999999987431 012222333
Q ss_pred HHhhhhccc-cccccccccccCcceeEEee
Q psy6316 173 IIKSQESSV-QTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 173 ~~~~~~~~~-~~~~i~~Sa~~g~gv~~~l~ 201 (259)
.+.+..... ..+++++||++|.|+++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (174)
T cd01895 139 EIRRKLPFLDYAPIVFISALTGQGVDKLFD 168 (174)
T ss_pred HHHhhcccccCCceEEEeccCCCCHHHHHH
Confidence 333332222 35788999999999877543
No 171
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=9.9e-21 Score=150.18 Aligned_cols=149 Identities=26% Similarity=0.317 Sum_probs=92.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.++|+++|.+|+|||||+|+|.+..+.....++. + ...... ...++.+|||||
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~------t-~~~~~~--------------------~~~~~~l~Dt~G 61 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV------T-RKPNHY--------------------DWGDFILTDLPG 61 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce------e-eCceEE--------------------eecceEEEeCCc
Confidence 3569999999999999999998876533222111 1 111100 001299999999
Q ss_pred C-----------cchHHHHHhhc----cCCCeEEEEEeCCCCC-----------CHHHHHHHHHHHhCCCCEEEEEeccc
Q psy6316 104 H-----------ESFSNLRNRGS----SLCDIAILVVDIMHGL-----------EPQTIESINILKSKKTPFVVALNKID 157 (259)
Q Consensus 104 ~-----------~~~~~~~~~~~----~~ad~~i~v~d~~~~~-----------~~~~~~~l~~~~~~~~piivv~NK~D 157 (259)
. +.+...+..++ ..++++++|+|+++.. ...+.+++..+...++|+++|+||+|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~D 141 (201)
T PRK04213 62 FGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMD 141 (201)
T ss_pred cccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 3 44554444443 4578999999986531 12334556666677899999999999
Q ss_pred ccCcccccchhhHHHHHhhhhcc------ccccccccccccCcceeEEeecCCC
Q psy6316 158 RLYNWNTMNRRDVRDIIKSQESS------VQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
+.... .+....+...... ++.+++++||++| |+++++..+..
T Consensus 142 l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 142 KIKNR-----DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred ccCcH-----HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence 86321 1112222221111 1125789999999 99886665543
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.83 E-value=5.3e-21 Score=149.03 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=100.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++.+..+.....++...... ....... . .+ .+.+|||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~-----~-------------~~---~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIIRYKG-----Q-------------DY---HLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE-EEEEECC-----E-------------EE---EEEEEECCCh
Confidence 35999999999999999999987664333332221110 0000000 0 01 1789999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
.++...+..++..+|++++|+|+++..+.+... ++..+. ..+.|+++++||+|+.... ..... ....+..
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~----~~~~~~~ 134 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR-QVSTE----EGKELAE 134 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC-ccCHH----HHHHHHH
Confidence 999988889999999999999998754444332 223332 2467999999999986321 11111 1222333
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.++++++++||++|.|+.+++.++.
T Consensus 135 ~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 135 SWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 4457788999999999988665553
No 173
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=1.1e-20 Score=170.30 Aligned_cols=203 Identities=21% Similarity=0.179 Sum_probs=126.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc--ccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT--NVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
++|+++|+.++|||||+++|+.. .+..... .. .......+.+..+....... .....+....+++||||
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~--~~-~~v~D~~~~E~erGiTi~~~------~~~i~~~~~~inliDTP 76 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE--TQ-ERVMDSNDLEKERGITILAK------NTAIKWNDYRINIVDTP 76 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccc--cc-eeeeccccccccCceEEEEE------EEEEecCCEEEEEEECC
Confidence 47999999999999999999862 2211100 00 00000000000000000000 00001222249999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---hc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ---ES 179 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~---~~ 179 (259)
||.+|...+..+++.+|++++|+|++++...++..++..+...++|.++++||+|+.........+++...+..+ ..
T Consensus 77 G~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~ 156 (607)
T PRK10218 77 GHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDE 156 (607)
T ss_pred CcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999888888888998888999999999999987432222223333333221 12
Q ss_pred cccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhh
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVF 256 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 256 (259)
...++++++||++|.+...... . .+-+...++++-++++.|..+.+.||.+.|.+++
T Consensus 157 ~~~~PVi~~SA~~G~~~~~~~~--------~------------~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~ 213 (607)
T PRK10218 157 QLDFPIVYASALNGIAGLDHED--------M------------AEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLD 213 (607)
T ss_pred ccCCCEEEeEhhcCcccCCccc--------c------------ccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeE
Confidence 2357889999999987532100 0 0112344556666677777777778887776653
No 174
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.83 E-value=1.2e-19 Score=149.53 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=102.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccccc-CccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNV-PADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
||+++|++|+|||||+++|+...-.....+.+......... +.+..+.. .+.. ...+..+...+++||||||+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgi--ti~~----~~~~~~~~~~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGI--TIQS----AATTCFWKDHRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCc--Ceec----cEEEEEECCEEEEEEECCCc
Confidence 59999999999999999997421110000001100000000 00000000 0000 00011222334999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccc-
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQT- 183 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (259)
.+|...+..+++.+|++++|+|+..+...++...+..+...++|+++++||+|+... ..+.....++.......+
T Consensus 75 ~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a----~~~~~~~~l~~~l~~~~~~ 150 (270)
T cd01886 75 VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA----DFFRVVEQIREKLGANPVP 150 (270)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCceE
Confidence 999999999999999999999999998888889999999999999999999998742 233444555544443333
Q ss_pred cccccccccC-cceeE
Q psy6316 184 HKTVESARKG-QEICI 198 (259)
Q Consensus 184 ~~i~~Sa~~g-~gv~~ 198 (259)
..+|+|+..+ .|+..
T Consensus 151 ~~~Pisa~~~f~g~vd 166 (270)
T cd01886 151 LQLPIGEEDDFRGVVD 166 (270)
T ss_pred EEeccccCCCceEEEE
Confidence 3458898754 34444
No 175
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.5e-20 Score=166.98 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=100.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|.+|||||||+|+|++...... ....+.+ ....... . .+....+.+|||||+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v-----~~~~gvT-~d~~~~~-----~-----------~~~~~~~~l~DT~G~ 96 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVV-----EDVPGVT-RDRVSYD-----A-----------EWNGRRFTVVDTGGW 96 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccc-----cCCCCCC-EeeEEEE-----E-----------EECCcEEEEEeCCCc
Confidence 5799999999999999999997653210 1111111 1100000 0 011113899999996
Q ss_pred cc--------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ES--------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~--------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
+. +...+..+++.+|++|+|+|++++.+..+..++..++..++|+++|+||+|+.... .+..+ .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~-----~~~~~---~ 168 (472)
T PRK03003 97 EPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE-----ADAAA---L 168 (472)
T ss_pred CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc-----hhhHH---H
Confidence 52 33345567889999999999999888877788888888899999999999986321 11111 1
Q ss_pred hhccccccccccccccCcceeEEeecCCCC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
....++ .++++||++|.|+++++..+...
T Consensus 169 ~~~g~~-~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 169 WSLGLG-EPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HhcCCC-CeEEEEcCCCCCcHHHHHHHHhh
Confidence 111112 34789999999999877666543
No 176
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=7.6e-21 Score=144.90 Aligned_cols=152 Identities=22% Similarity=0.155 Sum_probs=101.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++++..+.....++...... ...... .... .+.+||+||+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~----------------~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYR-KTIVVD-----GETY----------------TLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEE-EEEEEC-----CEEE----------------EEEEEECCChH
Confidence 4999999999999999999877654443332221110 000000 0001 28999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
.+...+...++.+|++++|+|+++..+..+. .++..+.. .+.|+++++||+|+.... . ...+........
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~----~~~~~~~~~~~~ 133 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER-Q----VSKEEGKALAKE 133 (160)
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc-e----ecHHHHHHHHHH
Confidence 9999888999999999999999875444333 23333322 368999999999987421 1 112233333444
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+.+++++||++|.|+.+++..+.
T Consensus 134 ~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 134 WGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred cCCcEEEeccCCCCCHHHHHHHHH
Confidence 457888999999999988665543
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=3.4e-20 Score=141.93 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=99.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+|++++..+...... ..++. ........ .....+.+||||
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~------~~~~~------~~~~~~~~----------~~~~~~~liDtp 59 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK------PQTTR------NRIRGIYT----------DDDAQIIFVDTP 59 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCC------CCcee------ceEEEEEE----------cCCeEEEEEECC
Confidence 356799999999999999999987654211110 00000 00000000 001138999999
Q ss_pred CCcchHH--------HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 103 GHESFSN--------LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 103 G~~~~~~--------~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
|...... .....+..+|++++|+|+++........+...+...+.|+++++||+|+... ........
T Consensus 60 G~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-----~~~~~~~~ 134 (168)
T cd04163 60 GIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-----KEDLLPLL 134 (168)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-----HHHHHHHH
Confidence 9654322 2344578999999999998875555666777777778999999999998732 23333334
Q ss_pred hhhhccc-cccccccccccCcceeEEeecC
Q psy6316 175 KSQESSV-QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~-~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....... ..+++.+|++++.|+++++..+
T Consensus 135 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 135 EKLKELGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred HHHHhccCCCceEEEEeccCCChHHHHHHH
Confidence 4444433 3577889999999988755433
No 178
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.83 E-value=4.1e-20 Score=147.73 Aligned_cols=66 Identities=36% Similarity=0.507 Sum_probs=61.4
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.++|||||||.+|......+++.+|++++|+|++++...++...+......++|+++++||+|+..
T Consensus 74 ~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 74 LINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred EEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 389999999999999999999999999999999999999988888888888899999999999863
No 179
>KOG0086|consensus
Probab=99.83 E-value=2.4e-20 Score=134.79 Aligned_cols=150 Identities=20% Similarity=0.150 Sum_probs=115.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+++++|+.|+|||+|+.+++..++.....-+++.+++.....+.... + .++||||+|+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~-----v----------------KLQIWDTAGQ 68 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKT-----V----------------KLQIWDTAGQ 68 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcE-----E----------------EEEEeecccH
Confidence 359999999999999999999999988777777777765444332211 1 2999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++|++....++++|-++++|+|+++..+...+. |+.-.+. .++-+++++||.|+.. .++.......++...
T Consensus 69 ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-----~R~VtflEAs~FaqE 143 (214)
T KOG0086|consen 69 ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-----EREVTFLEASRFAQE 143 (214)
T ss_pred HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-----hhhhhHHHHHhhhcc
Confidence 999999999999999999999999877776654 4444444 3556788999999863 234444455556655
Q ss_pred ccccccccccccCcceeEEe
Q psy6316 181 VQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l 200 (259)
...-+.++||++|+++++.+
T Consensus 144 nel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 144 NELMFLETSALTGENVEEAF 163 (214)
T ss_pred cceeeeeecccccccHHHHH
Confidence 55656689999999998844
No 180
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.83 E-value=9.6e-21 Score=144.94 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=108.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|..++|||||++++.+..+...+.++++.+........+.. .+ .+.+||++|++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~----------------~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGK-----PV----------------NLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTE-----EE----------------EEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccc-----cc----------------ccccccccccc
Confidence 5999999999999999999998887666555543332222222111 11 19999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
.+.......++.+|++++|+|.++..+..... |+..+.. .+.|+++++||.|+... .... .+..+.+...+
T Consensus 60 ~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~-~~v~----~~~~~~~~~~~ 134 (162)
T PF00071_consen 60 RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE-REVS----VEEAQEFAKEL 134 (162)
T ss_dssp GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SSSC----HHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccc-ccch----hhHHHHHHHHh
Confidence 99998889999999999999998755544433 4444443 24799999999998741 1222 23345555556
Q ss_pred cccccccccccCcceeEEeec
Q psy6316 182 QTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
+.+++.+||+++.|+.+.+..
T Consensus 135 ~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 135 GVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TSEEEEEBTTTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 688899999999999875543
No 181
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2.7e-20 Score=168.07 Aligned_cols=203 Identities=21% Similarity=0.183 Sum_probs=124.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc--ccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT--NVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+||+++|+.++|||||+++|+.. .+.... .... ......+.+..+... +... .....+....++|||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~--~v~~-~~~D~~~~ErerGiT--I~~~----~~~v~~~~~kinlIDTP 72 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANE--AVAE-RVMDSNDLERERGIT--ILAK----NTAIRYNGTKINIVDTP 72 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccc--ccee-ecccCchHHHhCCcc--EEee----eEEEEECCEEEEEEECC
Confidence 47999999999999999999853 221110 0000 000000001100000 0000 00011222349999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhh---c
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE---S 179 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~---~ 179 (259)
||.+|...+..+++.+|++++|+|+.++...++..++..+...++|+++++||+|+.........+++.+.+..+. .
T Consensus 73 Gh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 73 GHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDE 152 (594)
T ss_pred CHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999888999999999999999999999999864221111222222222111 2
Q ss_pred cccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhh
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVF 256 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 256 (259)
...++++++||++|.+....-. . .+-+...++.+-++++.|..+.+.||.+.|.++|
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~-----------~---------~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDD-----------P---------SDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred cccCcEEechhhcCcccccCcc-----------c---------ccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 2356788999999987544100 0 0011234455555566666666777777665554
No 182
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=4.6e-20 Score=155.99 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=96.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.||||||||+|+|++.+.. ...+..+|..+.... +... ....+++|||||.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-------va~ypfTT~~p~~G~-----v~~~----------~~~~~~i~D~PGl 216 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-------IADYPFTTLHPNLGV-----VRVD----------DYKSFVIADIPGL 216 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-------cCCCCCceeCceEEE-----EEeC----------CCcEEEEEeCCCc
Confidence 56999999999999999999876532 112222222221110 0000 0113999999995
Q ss_pred c-------chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh-----CCCCEEEEEecccccCcccccchhhHH
Q psy6316 105 E-------SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS-----KKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 105 ~-------~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
. .+...+..+++.+|++++|+|+++..+.++.. +...+.. .++|+++|+||+|+...+. ...
T Consensus 217 i~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~-----~~~ 291 (335)
T PRK12299 217 IEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE-----ERE 291 (335)
T ss_pred cCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh-----HHH
Confidence 3 24445566778899999999998654444443 4444543 3689999999999874211 111
Q ss_pred HHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 172 DIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 172 ~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...+......+++++++||++++|+++++..+
T Consensus 292 ~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L 323 (335)
T PRK12299 292 KRAALELAALGGPVFLISAVTGEGLDELLRAL 323 (335)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 12222223345788899999999998855444
No 183
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.8e-20 Score=159.53 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=106.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+++++|+||||||||+|+|++... ++..++..||.++-...-...+++ +.++||+|.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~------AIVTdI~GTTRDviee~i~i~G~p----------------v~l~DTAGi 275 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDR------AIVTDIAGTTRDVIEEDINLNGIP----------------VRLVDTAGI 275 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCc------eEecCCCCCccceEEEEEEECCEE----------------EEEEecCCc
Confidence 3499999999999999999998776 577777767666544433333333 999999995
Q ss_pred cchHHH--------HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFSNL--------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~~~--------~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.+-... ....+..||++++|+|++.+....+...+. ....++|+++|+||+|+..... ... . .
T Consensus 276 Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~------~~~-~-~ 346 (454)
T COG0486 276 RETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE------LES-E-K 346 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc------cch-h-h
Confidence 432222 224678999999999999877777776666 5566799999999999985321 111 1 1
Q ss_pred hhccccccccccccccCcceeEEeecCCC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.. .+.+++.+||++|+|++.+.+++..
T Consensus 347 ~~--~~~~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 347 LA--NGDAIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred cc--CCCceEEEEecCccCHHHHHHHHHH
Confidence 11 1346789999999999987666543
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=3.8e-20 Score=167.61 Aligned_cols=107 Identities=31% Similarity=0.399 Sum_probs=82.4
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++|||||||.+|...+..+++.+|++|+|+|++++...++...+..+...+.|+++|+||+|+... ........+.
T Consensus 76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a----~~~~v~~ei~ 151 (600)
T PRK05433 76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA----DPERVKQEIE 151 (600)
T ss_pred EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc----cHHHHHHHHH
Confidence 899999999999999999999999999999999988888888777777788999999999998632 1222223333
Q ss_pred hhhccccccccccccccCcceeEEeecCCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.........++++||++|.|++.++..+...
T Consensus 152 ~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 152 DVIGIDASDAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred HHhCCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence 3222111347899999999998766655443
No 185
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=3.2e-20 Score=146.19 Aligned_cols=162 Identities=13% Similarity=0.080 Sum_probs=99.4
Q ss_pred EEEEEeeCCCChhHHHh-HHhccccC-----CCCCCccee-eccccccCc-cccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 26 IVCVLGHVDTGKTKILD-KLRRTNVQ-----DGEAGGITQ-QIGATNVPA-DAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin-~l~~~~~~-----~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
+|+++|.+|+|||||+. ++.+..+. ..+.++++. +........ ..... .+.+. ...+.
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~---~~~~~-----------~v~l~ 69 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRD---VVDGV-----------SVSLR 69 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccce---eeCCE-----------EEEEE
Confidence 59999999999999996 56554332 222223321 000000000 00000 00000 01299
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCcccc---------
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNT--------- 164 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~--------- 164 (259)
||||+|++. .....+++.+|++++|+|.++..+..... |+..+.. .+.|+++|+||+|+......
T Consensus 70 iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 70 LWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred EEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccc
Confidence 999999875 24455789999999999999877776653 5555544 36899999999998631000
Q ss_pred -----cchhhHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 165 -----MNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 165 -----~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+....+..+.+...++++++++||++|.|+++++..+
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred ccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence 011222334455666667888999999999998866544
No 186
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=7.7e-20 Score=169.17 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=102.3
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|++|+|||||+|+|.+.....+...+.+. ..... . .. +...++.+|||
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv-------e~k~g--~---~~-----------~~~~~i~lvDt 57 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV-------ERKEG--Q---FS-----------TTDHQVTLVDL 57 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE-------eeEEE--E---EE-----------cCceEEEEEEC
Confidence 34567999999999999999999887654333222211 11000 0 00 11113999999
Q ss_pred CCCcchHHH----------HHhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhh
Q psy6316 102 PGHESFSNL----------RNRG--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRD 169 (259)
Q Consensus 102 pG~~~~~~~----------~~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~ 169 (259)
||+.++... ...+ ...+|++++|+|+++. .....++.++.+.++|+++++||+|+... ..
T Consensus 58 PG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~------~~ 129 (772)
T PRK09554 58 PGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEK------QN 129 (772)
T ss_pred CCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhc------cC
Confidence 997665321 1122 2589999999999873 34555677888889999999999998632 22
Q ss_pred HHHHHhhhhccccccccccccccCcceeEEeecCC
Q psy6316 170 VRDIIKSQESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.....+++...++++++++||++|+|++++.+.+.
T Consensus 130 i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 130 IRIDIDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred cHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 23334445555678999999999999988665553
No 187
>KOG0458|consensus
Probab=99.82 E-value=2.8e-20 Score=160.97 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=140.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc-------------------------------cCCCCCCcceeeccccccCcccccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN-------------------------------VQDGEAGGITQQIGATNVPADAIRE 73 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (259)
.+.+++|+.++|||||+.+|+..- ..+...++++.+++.+.....
T Consensus 178 l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~---- 253 (603)
T KOG0458|consen 178 LNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK---- 253 (603)
T ss_pred eEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC----
Confidence 569999999999999999996331 112222344444443333211
Q ss_pred ccccccCCCCCCCCCCCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCC
Q psy6316 74 NTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKK 146 (259)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~ 146 (259)
...++|+|+|||.+|...+......||++++|+|++.+ ...+.+++...++..+
T Consensus 254 -------------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg 314 (603)
T KOG0458|consen 254 -------------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG 314 (603)
T ss_pred -------------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC
Confidence 11299999999999999999999999999999999754 3456788888888888
Q ss_pred C-CEEEEEecccccCcccccchhhHHHHHhhhh-ccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchh
Q psy6316 147 T-PFVVALNKIDRLYNWNTMNRRDVRDIIKSQE-SSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDEND 219 (259)
Q Consensus 147 ~-piivv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~ 219 (259)
+ .++|++||+|.+ +|++...+++...+.-+. ... .+.+||+|+.+|+|+-..-+ .-....||.+.
T Consensus 315 i~qlivaiNKmD~V-~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~-~~~l~~WY~Gp------ 386 (603)
T KOG0458|consen 315 ISQLIVAINKMDLV-SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQ-ENELSQWYKGP------ 386 (603)
T ss_pred cceEEEEeeccccc-CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccccc-chhhhhhhcCC------
Confidence 6 478899999997 788778888888887776 333 45789999999999965210 00111222111
Q ss_pred hHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhc
Q psy6316 220 FLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 220 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 257 (259)
-.++.+++ +..+.+..+.||++.|.|+|.
T Consensus 387 --------~LL~~id~-~~~p~~~~~kPl~ltIsdi~~ 415 (603)
T KOG0458|consen 387 --------TLLSQIDS-FKIPERPIDKPLRLTISDIYP 415 (603)
T ss_pred --------hHHHHHhh-ccCCCCcccCCeEEEhhheee
Confidence 25566666 788888899999999999885
No 188
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.82 E-value=4.4e-20 Score=146.80 Aligned_cols=145 Identities=22% Similarity=0.308 Sum_probs=89.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|++|||||||+|+|++..+...... . .+..+... .+...+ ...+.||||||+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~--~-----~t~~~~~~-----~~~~~~----------~~~~~i~Dt~G~ 99 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQL--F-----ATLDPTTR-----RLRLPD----------GREVLLTDTVGF 99 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCcc--c-----eeccceeE-----EEEecC----------CceEEEeCCCcc
Confidence 4699999999999999999998764211110 0 01111000 000000 003999999996
Q ss_pred cc---------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHH---hCCCCEEEEEecccccCcccccchhhHH
Q psy6316 105 ES---------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILK---SKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 105 ~~---------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~---~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
.+ +.. ....+..+|++++|+|++++.+..... +...+. ..++|+++|+||+|+.... ...
T Consensus 100 ~~~~~~~~~~~~~~-~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~------~~~ 172 (204)
T cd01878 100 IRDLPHQLVEAFRS-TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE------ELE 172 (204)
T ss_pred ccCCCHHHHHHHHH-HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH------HHH
Confidence 32 111 112356899999999998766554432 223333 3468999999999997421 111
Q ss_pred HHHhhhhccccccccccccccCcceeEEeec
Q psy6316 172 DIIKSQESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 172 ~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
........+++++||++|.|+++++..
T Consensus 173 ----~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 199 (204)
T cd01878 173 ----ERLEAGRPDAVFISAKTGEGLDELLEA 199 (204)
T ss_pred ----HHhhcCCCceEEEEcCCCCCHHHHHHH
Confidence 222334567889999999999875543
No 189
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.82 E-value=4.4e-20 Score=157.31 Aligned_cols=145 Identities=21% Similarity=0.286 Sum_probs=90.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|.+|||||||+|+|++..+. ..+...++..+....... . ....+.||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~-------v~~~~~tT~d~~~~~i~~---~------------~~~~i~l~DT~G~ 247 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVY-------AADQLFATLDPTTRRLDL---P------------DGGEVLLTDTVGF 247 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcee-------eccCCccccCCEEEEEEe---C------------CCceEEEEecCcc
Confidence 66999999999999999999987542 212212222221111100 0 0113999999996
Q ss_pred c---------chHHHHHhhccCCCeEEEEEeCCCCCCHHHHH----HHHHHHhCCCCEEEEEecccccCcccccchhhHH
Q psy6316 105 E---------SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE----SINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 105 ~---------~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~----~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
. .|.. ....+..+|++++|+|++++....... ++..+...++|+++|+||+|+... ..+.
T Consensus 248 ~~~l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~ 320 (351)
T TIGR03156 248 IRDLPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIE 320 (351)
T ss_pred cccCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHH
Confidence 2 1222 223478999999999998876554432 333333347899999999998631 1111
Q ss_pred HHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 172 DIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 172 ~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
. .. . ...+++++||++|.|+++++..+
T Consensus 321 ~-~~---~-~~~~~i~iSAktg~GI~eL~~~I 347 (351)
T TIGR03156 321 R-LE---E-GYPEAVFVSAKTGEGLDLLLEAI 347 (351)
T ss_pred H-HH---h-CCCCEEEEEccCCCCHHHHHHHH
Confidence 1 11 1 12357899999999998865543
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=5.7e-20 Score=162.30 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=104.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+|+|++.... +......++....... . .+....+.+|||||
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~------~~~~~~gtt~~~~~~~-----~-----------~~~~~~~~lvDT~G 230 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERV------IVSDIAGTTRDSIDTP-----F-----------ERDGQKYTLIDTAG 230 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCce------eecCCCCceEEEEEEE-----E-----------EECCeeEEEEECCC
Confidence 456999999999999999999876532 1111111111110000 0 01111399999999
Q ss_pred CcchH-----------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 HESFS-----------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~~~~~-----------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+.... .....+++.+|++|+|+|++++.+.++..++..+.+.++|+++++||+|+...+ ..++...
T Consensus 231 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---~~~~~~~ 307 (435)
T PRK00093 231 IRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---TMEEFKK 307 (435)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---HHHHHHH
Confidence 54311 112346789999999999999999999999999888899999999999987321 2233444
Q ss_pred HHhhhhccc-cccccccccccCcceeEEeecC
Q psy6316 173 IIKSQESSV-QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~-~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+....... ..+++++||++|.|+.+++..+
T Consensus 308 ~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 308 ELRRRLPFLDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred HHHHhcccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 444333322 3578899999999998866554
No 191
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.1e-20 Score=151.22 Aligned_cols=115 Identities=27% Similarity=0.300 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~ 171 (259)
.++|.+.|||||+.|...+....+.||++|+++|+..+...|++++.....-.+++ +++++||+|+. ++++...+++.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLv-dy~e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLV-DYSEEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeeccc-ccCHHHHHHHH
Confidence 34599999999999999999999999999999999999999999988888888865 77889999998 44555666666
Q ss_pred HHHhhhhcccc---ccccccccccCcceeEEeecCCCCCCcccc
Q psy6316 172 DIIKSQESSVQ---THKTVESARKGQEICIKIEPIPGEAPKMFG 212 (259)
Q Consensus 172 ~~~~~~~~~~~---~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~ 212 (259)
.....+...++ ..+||+||+.|+|+... ....||+.+
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~----s~~mpWY~G 203 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVVSK----SENMPWYKG 203 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCccccc----ccCCCcccC
Confidence 66666666654 46789999999999874 344555543
No 192
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.82 E-value=5.1e-20 Score=140.46 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=94.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+.+++...+...+.+. ...+. ....... ..+ .+.+|||+|++
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~-~~i~~~~-----~~~----------------~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFK-KEVLVDG-----QSH----------------LLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceE-EEEEECC-----EEE----------------EEEEEECCCCC
Confidence 5999999999999999999877664432211 11110 0011000 001 18999999987
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCc-ccccchhhHHHHHhhhhc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYN-WNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~-~~~~~~~~~~~~~~~~~~ 179 (259)
.. .+++.+|++++|+|.++..+.+.. .++..+.. .+.|+++|+||+|+... ......+ ..+.+..
T Consensus 59 ~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~----~~~~~~~ 129 (158)
T cd04103 59 DA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDA----RARQLCA 129 (158)
T ss_pred ch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHH----HHHHHHH
Confidence 52 356789999999999998777763 45555543 34799999999998521 1111111 2222332
Q ss_pred cc-cccccccccccCcceeEEeecC
Q psy6316 180 SV-QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~-~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.. ++.++++||++|.|+++++..+
T Consensus 130 ~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 130 DMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred HhCCCcEEEEecCCCCCHHHHHHHH
Confidence 32 4788999999999998876554
No 193
>KOG0095|consensus
Probab=99.82 E-value=2.6e-20 Score=134.11 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=114.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|..|+|||+|++++...-+.++...+++.++-..+..+... .+. +.+|||+|+
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge-----kik----------------lqiwdtagq 66 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE-----KIK----------------LQIWDTAGQ 66 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe-----EEE----------------EEEeeccch
Confidence 45999999999999999999999998888888887766555544322 222 999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhC---CCCEEEEEecccccCcccccchhhH-HHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSK---KTPFVVALNKIDRLYNWNTMNRRDV-RDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~-~~~~~~~~~ 179 (259)
++|++...++++.|+++|+|+|.+...+..- -+|+..+... .+--|+|+||+|+.. +.++ .+.-+++.+
T Consensus 67 erfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d------rrevp~qigeefs~ 140 (213)
T KOG0095|consen 67 ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD------RREVPQQIGEEFSE 140 (213)
T ss_pred HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh------hhhhhHHHHHHHHH
Confidence 9999999999999999999999987666543 3566666653 334578999999863 2233 333344444
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.....+.++||+..++++.++..+
T Consensus 141 ~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 141 AQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred hhhhhhhhhcccchhhHHHHHHHH
Confidence 444566789999999998865433
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=6.3e-20 Score=162.00 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=101.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|++|+|||||+|+|++.... +......++........ .+....+.+|||||+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~------~v~~~~~~t~d~~~~~~----------------~~~~~~~~liDT~G~ 59 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA------IVADTPGVTRDRIYGEA----------------EWLGREFILIDTGGI 59 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce------eeCCCCCCcccceEEEE----------------EECCcEEEEEECCCC
Confidence 46999999999999999999877642 11111111111110000 011113999999998
Q ss_pred cc--------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ES--------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~--------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.. +......++..+|++|+|+|++++.+..+......++..++|+++|+||+|.... .... .+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~-----~~~~----~~ 130 (435)
T PRK00093 60 EPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE-----EADA----YE 130 (435)
T ss_pred CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc-----hhhH----HH
Confidence 76 2333455678999999999999888888888888888889999999999997521 1111 11
Q ss_pred hhccccc-cccccccccCcceeEEeecCCC
Q psy6316 177 QESSVQT-HKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 177 ~~~~~~~-~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
+. .+++ .++++||++|.|+++++..+..
T Consensus 131 ~~-~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 131 FY-SLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred HH-hcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 11 2233 4789999999999987776654
No 195
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5.8e-20 Score=162.02 Aligned_cols=147 Identities=21% Similarity=0.247 Sum_probs=101.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+|+|++.... +......++....... + .+....+.+|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~------~v~~~~g~t~d~~~~~-----~-----------~~~~~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA------IVSDTPGVTRDRKYGD-----A-----------EWGGREFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc------eecCCCCcccCceEEE-----E-----------EECCeEEEEEECCCCC
Confidence 3899999999999999999876532 1111111111111100 0 0111139999999963
Q ss_pred --------chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 106 --------SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 106 --------~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
.+......+++.+|++++|+|++++.+..+..+...+++.++|+++|+||+|+...+ ... . ++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~-----~~~-~---~~ 129 (429)
T TIGR03594 59 EDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED-----AVA-A---EF 129 (429)
T ss_pred CcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc-----ccH-H---HH
Confidence 344455667899999999999999888888888888988999999999999987422 111 1 11
Q ss_pred hccccc-cccccccccCcceeEEeecCC
Q psy6316 178 ESSVQT-HKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~~~-~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
. .+++ .++++||.+|.|+.+++..+.
T Consensus 130 ~-~lg~~~~~~vSa~~g~gv~~ll~~i~ 156 (429)
T TIGR03594 130 Y-SLGFGEPIPISAEHGRGIGDLLDAIL 156 (429)
T ss_pred H-hcCCCCeEEEeCCcCCChHHHHHHHH
Confidence 1 2234 678999999999988766554
No 196
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.81 E-value=9.3e-20 Score=159.60 Aligned_cols=144 Identities=23% Similarity=0.278 Sum_probs=92.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+|+|++.... +...+..++.......-. +....+.+|||||+
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~a------ivs~~pgtTrd~~~~~i~----------------~~g~~v~l~DTaG~ 261 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRA------IVSDIKGTTRDVVEGDFE----------------LNGILIKLLDTAGI 261 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCc------ccCCCCCcEEEEEEEEEE----------------ECCEEEEEeeCCCc
Confidence 46999999999999999999876431 111121122211111000 11112899999997
Q ss_pred cchHHH--------HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFSNL--------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~~~--------~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
..+... ...+++.+|++++|+|++++.+..+. ++..+...++|+++|+||+|+... +. ..
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-------~~----~~ 329 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-------SL----EF 329 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-------ch----hh
Confidence 554322 23567899999999999887776555 666666678999999999998632 11 11
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+...++.+++.+||++ .|+++.+..+
T Consensus 330 ~~~~~~~~~~~vSak~-~gI~~~~~~L 355 (442)
T TIGR00450 330 FVSSKVLNSSNLSAKQ-LKIKALVDLL 355 (442)
T ss_pred hhhhcCCceEEEEEec-CCHHHHHHHH
Confidence 2223345678899998 4666644444
No 197
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=8.2e-20 Score=141.34 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=97.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|.+..+... ..+.+.+..... .....+.+|||||
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~---------------------~~~~~~~~~D~~G 67 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQ---------------------SDGFKLNVWDIGG 67 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEE---------------------ECCEEEEEEECCC
Confidence 45599999999999999999987654211 111111100000 0011289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHH----HhCCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINIL----KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~----~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
+..+...+..+++.+|++++|+|+++...... ...+..+ ...++|+++++||+|+.... ..+++.+.+....
T Consensus 68 ~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~i~~~l~~~~ 144 (173)
T cd04155 68 QRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PAEEIAEALNLHD 144 (173)
T ss_pred CHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CHHHHHHHcCCcc
Confidence 99888888889999999999999986433222 2222222 23468999999999986421 1223333222111
Q ss_pred -ccccccccccccccCcceeEEeecCC
Q psy6316 179 -SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 -~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....++++++||++|.|+++++..+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 145 LRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred cCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 11124567899999999998776653
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=2.3e-19 Score=134.47 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=115.8
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCC-CCeEEE
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEI-PGLLII 99 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li 99 (259)
.++..+|+++|+.++||||++.+++.................. ..+ .+....++.+ .+.. ..+.++
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~-kr~-tTva~D~g~~-----------~~~~~~~v~Lf 73 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKG-KRP-TTVAMDFGSI-----------ELDEDTGVHLF 73 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeecccccccccc-ccc-eeEeecccce-----------EEcCcceEEEe
Confidence 5667889999999999999999998775321111000000000 000 0000111111 1111 129999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCC-CCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK-TPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~-~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
|||||++|.-+|..+.+.+.++|+++|++.+......+.+..+...+ +|+++++||.|+...+ ..+++.+.+....
T Consensus 74 gtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~---ppe~i~e~l~~~~ 150 (187)
T COG2229 74 GTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL---PPEKIREALKLEL 150 (187)
T ss_pred cCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC---CHHHHHHHHHhcc
Confidence 99999999999999999999999999999988887778888888877 9999999999998554 4455555554443
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+.+.|..+|.+++|..+.+..++
T Consensus 151 --~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 151 --LSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred --CCCceeeeecccchhHHHHHHHHH
Confidence 467899999999999877555444
No 199
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.81 E-value=3.3e-20 Score=143.91 Aligned_cols=151 Identities=23% Similarity=0.240 Sum_probs=102.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|..||||||++++|....... ..++.+........ ....+.+||.+|
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~---------------------~~~~~~~~d~gG 67 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY---------------------KGYSLTIWDLGG 67 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE---------------------TTEEEEEEEESS
T ss_pred EEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee---------------------CcEEEEEEeccc
Confidence 3459999999999999999998654321 22222222211111 111299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHH-HHHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh--h
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQ-TIESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK--S 176 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~-~~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~--~ 176 (259)
+..+...|..+++.+|++|||+|+++..... ....+..+.. .++|+++++||.|+.... ...++...+. .
T Consensus 68 ~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~---~~~~i~~~l~l~~ 144 (175)
T PF00025_consen 68 QESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM---SEEEIKEYLGLEK 144 (175)
T ss_dssp SGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS---THHHHHHHTTGGG
T ss_pred cccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc---hhhHHHhhhhhhh
Confidence 9999999999999999999999998743322 2333333322 468999999999987432 3344444332 2
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+.....+.++.+||.+|+|+.+.++++
T Consensus 145 l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 145 LKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp TTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred cccCCceEEEeeeccCCcCHHHHHHHH
Confidence 222456778899999999998755443
No 200
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.81 E-value=5.7e-20 Score=144.17 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=100.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++....+.+....+....+.. .... ....+ .+.+|||||++
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~-----~~~~~----------------~l~i~Dt~g~~ 60 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRV-----DGKPV----------------QLALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEE-----CCEEE----------------EEEEEECCCCh
Confidence 59999999999999999998666544332222211110 0000 00001 28999999988
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCccccc-----chhhHHHHHhh
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNTM-----NRRDVRDIIKS 176 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~~-----~~~~~~~~~~~ 176 (259)
.+.......+..+|++++++|.++..+.... .++..+.. .+.|+++|+||+|+....... .+.........
T Consensus 61 ~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (187)
T cd04129 61 EYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR 140 (187)
T ss_pred hccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH
Confidence 8776666677899999999999876555443 25555543 368999999999985321100 01111122333
Q ss_pred hhcccc-ccccccccccCcceeEEeecCC
Q psy6316 177 QESSVQ-THKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 177 ~~~~~~-~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+...++ ..++++||++|.|+++++..+.
T Consensus 141 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 141 VAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred HHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 444444 3688999999999998776554
No 201
>KOG0462|consensus
Probab=99.81 E-value=6.5e-20 Score=157.45 Aligned_cols=166 Identities=27% Similarity=0.339 Sum_probs=122.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcccc--CC-------------CCCCcceeeccccccCccccccccccccCCCCCCCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNV--QD-------------GEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGG 87 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (259)
+.+|++|+-+.++|||||..+|+...- .. ...++|+..- ++..-...+ +.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIka-------Qtasify~~--~~------ 123 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKA-------QTASIFYKD--GQ------ 123 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEe-------eeeEEEEEc--CC------
Confidence 356899999999999999999963311 00 0111221111 100000000 00
Q ss_pred CCCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccch
Q psy6316 88 PGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNR 167 (259)
Q Consensus 88 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~ 167 (259)
.| -+++||||||.+|.....+.+..||++|+|+|+.++...|+...+....+.+..+|.|+||+|+... ..
T Consensus 124 --~y---lLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a----dp 194 (650)
T KOG0462|consen 124 --SY---LLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA----DP 194 (650)
T ss_pred --ce---EEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC----CH
Confidence 12 2999999999999999999999999999999999999999999999999999999999999999854 35
Q ss_pred hhHHHHHhhhhccccccccccccccCcceeEEeecCCCCCCcccc
Q psy6316 168 RDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIPGEAPKMFG 212 (259)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~ 212 (259)
+.....+..+....+-+++.+||++|.|+..++.+++...|....
T Consensus 195 e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 195 ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 666666777766666789999999999998866666655555433
No 202
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=1.1e-19 Score=137.91 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=92.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||++++.+....... ....++....... . ......+++|||||+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~------~~~~~~~~~~~~~-----~-----------~~~~~~~~i~DtpG~~ 60 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS------DIAGTTRDVIEES-----I-----------DIGGIPVRLIDTAGIR 60 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc------CCCCCccceEEEE-----E-----------EeCCEEEEEEECCCcC
Confidence 4999999999999999999876542110 0001111110000 0 0111138999999965
Q ss_pred chHH--------HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 106 SFSN--------LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 106 ~~~~--------~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
++.. .....+..+|++++|+|+++..+..+...+.. ..+.|+++|+||+|+.... .. .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~------~~------~ 126 (157)
T cd04164 61 ETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS------EL------L 126 (157)
T ss_pred CCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc------cc------c
Confidence 5432 12345678999999999998766666555444 5679999999999997432 11 2
Q ss_pred hccccccccccccccCcceeEEeec
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
......+++++||+++.|+++++..
T Consensus 127 ~~~~~~~~~~~Sa~~~~~v~~l~~~ 151 (157)
T cd04164 127 SLLAGKPIIAISAKTGEGLDELKEA 151 (157)
T ss_pred cccCCCceEEEECCCCCCHHHHHHH
Confidence 2333567889999999999875544
No 203
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.80 E-value=1.1e-19 Score=153.53 Aligned_cols=151 Identities=20% Similarity=0.206 Sum_probs=94.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.+|||||||+|+|++.+.. ...+..++..+.... +...+ ...++||||||.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-------va~y~fTT~~p~ig~-----v~~~~----------~~~~~i~D~PGl 215 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-------IADYPFTTLVPNLGV-----VRVDD----------GRSFVIADIPGL 215 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-------ccCCCCCccCCEEEE-----EEeCC----------ceEEEEEeCCCc
Confidence 56999999999999999999876532 111112222111100 00000 013999999995
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCC---CCHHHHH-HHHHHHh-----CCCCEEEEEecccccCcccccchh
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHG---LEPQTIE-SINILKS-----KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~---~~~~~~~-~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
.. ....+...+..+|++++|+|+++. ....+.. +..++.. .++|+++|+||+|+... .
T Consensus 216 i~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~ 289 (329)
T TIGR02729 216 IEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------E 289 (329)
T ss_pred ccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------H
Confidence 32 344455567789999999999864 2222332 3333433 36899999999999742 2
Q ss_pred hHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...+..+.+....+++++++||++++|+++++..+
T Consensus 290 ~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I 324 (329)
T TIGR02729 290 ELAELLKELKKALGKPVFPISALTGEGLDELLYAL 324 (329)
T ss_pred HHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHH
Confidence 22233333333445688899999999998865443
No 204
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=1.8e-19 Score=144.46 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=102.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++++...+...+..+++..+......... ..+ .+.+|||||
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~i----------------~i~~~Dt~g 67 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC-----GPI----------------CFNVWDTAG 67 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC-----eEE----------------EEEEEECCC
Confidence 34599999999999999988876666555444444333221111100 111 199999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++.+...+..++..++++++|+|.++..+..... ++..+.. .+.|+++++||+|+.... ...+.. .+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~---~~~~~~----~~~~~ 140 (215)
T PTZ00132 68 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ---VKARQI----TFHRK 140 (215)
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc---CCHHHH----HHHHH
Confidence 9999888888899999999999998866655433 3333332 468999999999985321 111111 22233
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++.++++||++|.|+++.+..+
T Consensus 141 ~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 141 KNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHH
Confidence 45678899999999998755443
No 205
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=160.71 Aligned_cols=152 Identities=21% Similarity=0.259 Sum_probs=115.5
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+...|+++|.||+|||||.|+|+|.+...+++++.+.+...... .++.+++.++|+|
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~-----------------------~~~~~~i~ivDLP 58 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKL-----------------------KYKGHEIEIVDLP 58 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEE-----------------------EecCceEEEEeCC
Confidence 34569999999999999999999999887777766543322111 1222249999999
Q ss_pred CCcchH------HHHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 103 GHESFS------NLRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 103 G~~~~~------~~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
|..... .....++ ..+|+++.|+|+++ .+.+..+.-++.+.++|+++++|++|.. +++.+.-..
T Consensus 59 G~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A------~~~Gi~ID~ 130 (653)
T COG0370 59 GTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA------KKRGIRIDI 130 (653)
T ss_pred CcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH------HhcCCcccH
Confidence 932211 2222333 57899999999987 5667778889999999999999999997 355566667
Q ss_pred hhhhccccccccccccccCcceeEEeecCCC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
+++.+.++++.+++||++|+|+++++.++..
T Consensus 131 ~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 131 EKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred HHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 7777888999999999999999987776654
No 206
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=4e-19 Score=164.82 Aligned_cols=157 Identities=17% Similarity=0.284 Sum_probs=104.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.++|+++|++|+|||||+|+|++.+.. +......++........ .+...++.||||||
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~------~v~~~~gtT~d~~~~~~----------------~~~~~~~~liDTaG 507 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERA------VVNDLAGTTRDPVDEIV----------------EIDGEDWLFIDTAG 507 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc------ccCCCCCCCcCcceeEE----------------EECCCEEEEEECCC
Confidence 467999999999999999999987642 11112112221111100 01111388999999
Q ss_pred Ccc----------hHHH-HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 HES----------FSNL-RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~~~----------~~~~-~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+.. |... ...+++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+.... ..+.+..
T Consensus 508 ~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~---~~~~~~~ 584 (712)
T PRK09518 508 IKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEF---RRQRLER 584 (712)
T ss_pred cccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChh---HHHHHHH
Confidence 531 2221 1245689999999999999999999888888888899999999999997421 1222333
Q ss_pred HHhhhhcccc-ccccccccccCcceeEEeecCCC
Q psy6316 173 IIKSQESSVQ-THKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 173 ~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+........ .+++++||++|.|+++++..+..
T Consensus 585 ~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 585 LWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred HHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3333222222 35578999999999987766544
No 207
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.80 E-value=1e-19 Score=138.72 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=86.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+|+|.+... ... ...... +.. ..+|||||+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-------~~~-------~~~~v~------------------~~~--~~~iDtpG~~ 48 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-------LAR-------KTQAVE------------------FND--KGDIDTPGEY 48 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-------cCc-------cceEEE------------------ECC--CCcccCCccc
Confidence 699999999999999999976431 100 000000 000 1369999962
Q ss_pred ----chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 106 ----SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 106 ----~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
++.......+..+|++++|+|+++..+......+. + ..+.|+++++||+|+... ..+...+.+.... .
T Consensus 49 ~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~-~-~~~~~ii~v~nK~Dl~~~----~~~~~~~~~~~~~--~ 120 (158)
T PRK15467 49 FSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLD-I-GVSKRQIAVISKTDMPDA----DVAATRKLLLETG--F 120 (158)
T ss_pred cCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHh-c-cCCCCeEEEEEccccCcc----cHHHHHHHHHHcC--C
Confidence 33333445578999999999998765443322222 1 246799999999998531 1222222222221 1
Q ss_pred cccccccccccCcceeEEeecCCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+++++||++|.|+++++..+..
T Consensus 121 ~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 121 EEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCEEEEECCCccCHHHHHHHHHH
Confidence 247889999999999987665543
No 208
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.80 E-value=1.2e-18 Score=144.29 Aligned_cols=167 Identities=18% Similarity=0.213 Sum_probs=104.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccc-cccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADA-IRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+|+++|++|+|||||+++|+...-.....+.+. .+.+...... .......+... .....+...++++|||||+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~----~~~~~~~~~~i~liDtPG~ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTS----VAPLEWKGHKINLIDTPGY 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccce----eEEEEECCEEEEEEECcCH
Confidence 489999999999999999975432111111111 1111111000 00000000000 0000122224999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTH 184 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (259)
.+|...+..+++.+|++++|+|++.+...+....+..+...++|.++++||+|+... ..++....++.. ++.+
T Consensus 75 ~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~----~~~~~~~~l~~~---~~~~ 147 (268)
T cd04170 75 ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA----DFDKTLAALQEA---FGRP 147 (268)
T ss_pred HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC----CHHHHHHHHHHH---hCCC
Confidence 988888899999999999999999988887788888888889999999999998742 223333334333 2334
Q ss_pred cc--ccccccCcceeEEeecCCC
Q psy6316 185 KT--VESARKGQEICIKIEPIPG 205 (259)
Q Consensus 185 ~i--~~Sa~~g~gv~~~l~~i~~ 205 (259)
++ .+...+|.++..++..+..
T Consensus 148 ~~~~~ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 148 VVPLQLPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred eEEEEecccCCCceeEEEEcccC
Confidence 44 4567888888877665543
No 209
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=3.2e-19 Score=142.77 Aligned_cols=133 Identities=27% Similarity=0.269 Sum_probs=82.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecc--ccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIG--ATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+++|++|+|||||+++|+.........+....... ......+..+............- .........+++|||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVL-PDSKGKSYLFNIIDTPG 80 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEE-EcCCCCEEEEEEEECCC
Confidence 6999999999999999999876543221000000000 00000000000000000000000 00000112389999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+.+|......++..+|++++|+|++++.......++......+.|+++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99998888899999999999999998887777777777777789999999999986
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=2.5e-19 Score=166.23 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=101.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|++|+|||||+|+|++.... +......++... ..... .+....+.+|||||.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~------iv~~~pGvT~d~------~~~~~----------~~~~~~~~liDT~G~ 333 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREA------VVEDTPGVTRDR------VSYDA----------EWAGTDFKLVDTGGW 333 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce------eecCCCCeeEEE------EEEEE----------EECCEEEEEEeCCCc
Confidence 57999999999999999999876531 111111111110 00000 111123999999996
Q ss_pred cc--------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ES--------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~--------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.. +......+++.+|++|+|+|++++....+..++..++..++|+++|+||+|+... ...... .
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-----~~~~~~-~-- 405 (712)
T PRK09518 334 EADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-----EYDAAE-F-- 405 (712)
T ss_pred CCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-----hhhHHH-H--
Confidence 53 3344456788999999999999988888888888888899999999999998631 111111 1
Q ss_pred hhccccccccccccccCcceeEEeecCCCC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
....+ ...+++||++|.|+.+++..+...
T Consensus 406 ~~lg~-~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 406 WKLGL-GEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred HHcCC-CCeEEEECCCCCCchHHHHHHHHh
Confidence 11111 245789999999999877666543
No 211
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.3e-19 Score=154.49 Aligned_cols=170 Identities=17% Similarity=0.159 Sum_probs=101.6
Q ss_pred hhhhhhhhhhhcCCCCccc---------cc-ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccc
Q psy6316 3 AVFNKRREKIEENPEDENF---------MR-AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIR 72 (259)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~---------~r-~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (259)
+.|.+.+.+.-..++.+.. +| -..|+++|.||||||||+|+|++.+.. + ..+..++..+....
T Consensus 127 ~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~k------I-a~ypfTTl~PnlG~ 199 (424)
T PRK12297 127 AHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPK------I-ANYHFTTLVPNLGV 199 (424)
T ss_pred hhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCc------c-ccCCcceeceEEEE
Confidence 4566666655555543311 11 236999999999999999999876542 1 12222222221110
Q ss_pred cccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc-------hHHHHHhhccCCCeEEEEEeCCCC---CCHHH-HHHHHH
Q psy6316 73 ENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES-------FSNLRNRGSSLCDIAILVVDIMHG---LEPQT-IESINI 141 (259)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-------~~~~~~~~~~~ad~~i~v~d~~~~---~~~~~-~~~l~~ 141 (259)
+...+ ...+++|||||... ....+...+..+|++++|+|+++. ....+ ..+...
T Consensus 200 -----v~~~~----------~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~E 264 (424)
T PRK12297 200 -----VETDD----------GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKE 264 (424)
T ss_pred -----EEEeC----------CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHH
Confidence 00000 11399999999532 233444556789999999999753 12222 234444
Q ss_pred HHh-----CCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 142 LKS-----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 142 ~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+.. .++|.++|+||+|+.. ..+. ++.+...++++++++||++++|+++++..+
T Consensus 265 L~~y~~~L~~kP~IVV~NK~DL~~------~~e~---l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L 322 (424)
T PRK12297 265 LKLYNPRLLERPQIVVANKMDLPE------AEEN---LEEFKEKLGPKVFPISALTGQGLDELLYAV 322 (424)
T ss_pred HhhhchhccCCcEEEEEeCCCCcC------CHHH---HHHHHHHhCCcEEEEeCCCCCCHHHHHHHH
Confidence 443 3689999999999742 1111 222222223678899999999999865544
No 212
>KOG0073|consensus
Probab=99.79 E-value=6.9e-19 Score=128.84 Aligned_cols=148 Identities=22% Similarity=0.212 Sum_probs=105.4
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
+|| |.++|..||||||++++|.+.... ++....++...... ++...+++||
T Consensus 16 E~r---iLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Iktl~---------------------~~~~~L~iwD 66 (185)
T KOG0073|consen 16 EVR---ILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKTLE---------------------YKGYTLNIWD 66 (185)
T ss_pred eeE---EEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEEEE---------------------ecceEEEEEE
Confidence 566 999999999999999999877632 23333332222211 1112399999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHH----HhCCCCEEEEEecccccCcccccchhhHH--HH
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINIL----KSKKTPFVVALNKIDRLYNWNTMNRRDVR--DI 173 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~----~~~~~piivv~NK~D~~~~~~~~~~~~~~--~~ 173 (259)
..|+..+++.|..|+..+|++|+|+|.++....++ ...+..+ +-.+.|++++.||.|+... ...+.+. ..
T Consensus 67 vGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~---l~~~~i~~~~~ 143 (185)
T KOG0073|consen 67 VGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA---LSLEEISKALD 143 (185)
T ss_pred cCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc---cCHHHHHHhhC
Confidence 99999999999999999999999999876544333 2222222 2357899999999999732 2334444 34
Q ss_pred HhhhhccccccccccccccCcceeEEe
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
++.+.+...|+++.+||.+|+++.+-+
T Consensus 144 L~~l~ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 144 LEELAKSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred HHHhccccCceEEEEeccccccHHHHH
Confidence 566667788999999999998876533
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=6.2e-19 Score=142.80 Aligned_cols=129 Identities=29% Similarity=0.337 Sum_probs=86.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccC-ccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVP-ADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+|+++|++|+|||||+++|+...-.....+.+.......... .+..+....... ..+..+...++.+|||||+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~------~~~~~~~~~~i~liDTPG~ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSA------VASFQWEDTKVNLIDTPGH 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeee------eEEEEECCEEEEEEeCCCc
Confidence 589999999999999999976422111111111000000000 000000000000 0001122234999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.+|...+..+++.+|++++|+|++++...+...++..+...++|+++++||+|+..
T Consensus 75 ~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 75 MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 99999999999999999999999998888888888888889999999999999874
No 214
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.79 E-value=1.2e-18 Score=143.49 Aligned_cols=132 Identities=27% Similarity=0.335 Sum_probs=85.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCccee--eccccccCcccc-ccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQ--QIGATNVPADAI-RENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++|+++|++|+|||||+++|+...-.....+.+.. ..+.+..+.... +.....+... ..+..+....+.+|||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~----~~~~~~~~~~i~liDT 78 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSS----VMQFEYRDCVINLLDT 78 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEE----EEEEeeCCEEEEEEEC
Confidence 57999999999999999999753211111111110 001111111100 0000000000 0011223334999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
||+.+|......+++.+|++|+|+|++++...+...++......++|+++++||+|+..
T Consensus 79 PG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 79 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 99999988888889999999999999988777777788888888999999999999864
No 215
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=5.4e-19 Score=133.82 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=94.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|.+..+...+.++.+............ ... .+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDG-----KTY----------------KFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 4699999999999999999998875443333333222111111100 001 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCC-CCHHH--HHHHHHH---HhCCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHG-LEPQT--IESINIL---KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~--~~~l~~~---~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
..+...+......++.++.++|.... .+... ..+...+ ...+.|+++++||+|+.... ........+.
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~--- 134 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK---LKTHVAFLFA--- 134 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch---hhHHHHHHHh---
Confidence 99988888878888888888887654 22211 1222222 22278999999999997321 1111222222
Q ss_pred ccccccccccccccCcceeEEeec
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.....+++++||++|.|+.+++..
T Consensus 135 ~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 135 KLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred hccCCceEEeecCCCCCHHHHHHH
Confidence 222456889999999999875543
No 216
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=5.9e-19 Score=154.81 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=92.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.||||||||+|+|++.+.. + .++..+|..+.... +. +....|+||||||.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk------I-adypfTTl~P~lGv-----v~-----------~~~~~f~laDtPGl 216 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK------I-ADYPFTTLVPNLGV-----VQ-----------AGDTRFTVADVPGL 216 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc------c-cccCcccccceEEE-----EE-----------ECCeEEEEEECCCC
Confidence 56999999999999999999876542 2 22222332221111 10 11113999999995
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCCC----CHHHHH-HHHHH--------------HhCCCCEEEEEecccc
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHGL----EPQTIE-SINIL--------------KSKKTPFVVALNKIDR 158 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~~----~~~~~~-~l~~~--------------~~~~~piivv~NK~D~ 158 (259)
.. .......++..+|++|+|+|+++.. ...+.. +...+ ...++|+++|+||+|+
T Consensus 217 iegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL 296 (500)
T PRK12296 217 IPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV 296 (500)
T ss_pred ccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence 32 2233445678899999999997521 111222 11122 1246899999999998
Q ss_pred cCcccccchhhHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 159 LYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
... .+..+.+.......+++++++||+++.|+++++..+
T Consensus 297 ~da------~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 297 PDA------RELAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhh------HHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 632 222333332333346788999999999998865444
No 217
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=1.1e-18 Score=151.95 Aligned_cols=150 Identities=17% Similarity=0.283 Sum_probs=92.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+.|+++|.+|||||||+|+|++..+... +...++..+....-. .. + ...+.+|||||.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~-------~~~~tTld~~~~~i~---l~--~----------~~~~~l~DTaG~ 255 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA-------DQLFATLDPTLRRID---VA--D----------VGETVLADTVGF 255 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec-------cCCCCCcCCceEEEE---eC--C----------CCeEEEEecCcc
Confidence 6799999999999999999987664311 111112211110000 00 0 012899999996
Q ss_pred cch--HHH------HHhhccCCCeEEEEEeCCCCCCHHHH----HHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 105 ESF--SNL------RNRGSSLCDIAILVVDIMHGLEPQTI----ESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 105 ~~~--~~~------~~~~~~~ad~~i~v~d~~~~~~~~~~----~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
.+. ... +...+..+|++++|+|++++...... .++..+...++|+++|+||+|+.... .... .
T Consensus 256 ~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~----~~~~-~ 330 (426)
T PRK11058 256 IRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF----EPRI-D 330 (426)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch----hHHH-H
Confidence 321 111 22346889999999999887655543 33444444579999999999986321 0111 1
Q ss_pred HHhhhhcccccc-ccccccccCcceeEEeecCCCC
Q psy6316 173 IIKSQESSVQTH-KTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 173 ~~~~~~~~~~~~-~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.. ..+.+ .+.+||++|.|++.++..+...
T Consensus 331 ---~~--~~~~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 331 ---RD--EENKPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred ---HH--hcCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 11 11233 4789999999999877666443
No 218
>KOG0091|consensus
Probab=99.77 E-value=8.2e-19 Score=128.32 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=114.1
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
+.++|++-+|||||+..+...++.+-..++++.+.-....... ....+ .+.+|||+|+++
T Consensus 11 livigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~----pg~ri----------------klqlwdtagqer 70 (213)
T KOG0091|consen 11 LIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELR----PGYRI----------------KLQLWDTAGQER 70 (213)
T ss_pred EEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcC----CCcEE----------------EEEEeeccchHH
Confidence 9999999999999999999999887666666655432222111 11111 299999999999
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC----CCC-EEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK----KTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~----~~p-iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
|++...++++.+=++++|+|.++..+....+ |+...... .++ ..+|++|+|+.. .++...+..+++.+.
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-----qRqVt~EEaEklAa~ 145 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-----QRQVTAEEAEKLAAS 145 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-----hccccHHHHHHHHHh
Confidence 9999999999999999999999987777665 33333321 233 467999999974 355666777888888
Q ss_pred ccccccccccccCcceeEEe
Q psy6316 181 VQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l 200 (259)
.+..++++||++|.|+++.+
T Consensus 146 hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred cCceEEEecccCCCcHHHHH
Confidence 89999999999999998743
No 219
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=7.6e-19 Score=136.07 Aligned_cols=146 Identities=19% Similarity=0.174 Sum_probs=87.0
Q ss_pred EEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCC-CCCeEEEeCCCCcc-
Q psy6316 29 VLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLE-IPGLLIIDTPGHES- 106 (259)
Q Consensus 29 v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~- 106 (259)
++|++|||||||+|+|.+....... ...++..+.... + .+. ...+.||||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~-------~~~~t~~~~~~~-----~-----------~~~~~~~~~i~DtpG~~~~ 57 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVAN-------YPFTTLEPNLGV-----V-----------EVPDGARIQVADIPGLIEG 57 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccC-------CCceeecCcceE-----E-----------EcCCCCeEEEEeccccchh
Confidence 5899999999999999887541111 111111111000 0 011 12399999999632
Q ss_pred ------hHHHHHhhccCCCeEEEEEeCCCCC------CHHHHH-HHHHHH----------hCCCCEEEEEecccccCccc
Q psy6316 107 ------FSNLRNRGSSLCDIAILVVDIMHGL------EPQTIE-SINILK----------SKKTPFVVALNKIDRLYNWN 163 (259)
Q Consensus 107 ------~~~~~~~~~~~ad~~i~v~d~~~~~------~~~~~~-~l~~~~----------~~~~piivv~NK~D~~~~~~ 163 (259)
....+...++.+|++++|+|+++.. ...+.. +...+. ..++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-- 135 (176)
T cd01881 58 ASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-- 135 (176)
T ss_pred hhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--
Confidence 1122345577899999999998763 222222 222222 146899999999999732
Q ss_pred ccchhhHHHH-HhhhhccccccccccccccCcceeEEeecC
Q psy6316 164 TMNRRDVRDI-IKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...... ...........++++||++|.|++++++.+
T Consensus 136 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 136 ----EELEEELVRELALEEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred ----hHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHH
Confidence 111111 122233345678899999999998765543
No 220
>KOG0088|consensus
Probab=99.77 E-value=1.1e-19 Score=132.23 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=115.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|..-+|||||+-+++..+|....-.++...+-.....++.. .-++.||||+|+
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~---------------------ra~L~IWDTAGQ 72 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDC---------------------RADLHIWDTAGQ 72 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccc---------------------eeeeeeeeccch
Confidence 55999999999999999999988886655444433222222221111 113999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++|..+-.-|+++++++++|+|.++..+++... |...++. ..+-+++|+||+|+.. ++....+....+...
T Consensus 73 ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-----eR~Vt~qeAe~YAes 147 (218)
T KOG0088|consen 73 ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-----ERQVTRQEAEAYAES 147 (218)
T ss_pred HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-----hhhhhHHHHHHHHHh
Confidence 999999889999999999999999987777644 5555554 3467899999999963 345566667777888
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+..++.+||+.+.|+.+++..+
T Consensus 148 vGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 148 VGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred hchhheecccccccCHHHHHHHH
Confidence 88899999999999999876544
No 221
>PLN00023 GTP-binding protein; Provisional
Probab=99.77 E-value=4.7e-18 Score=140.85 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=90.3
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
+.+...+|+++|..|+|||||++++.+..+...+..+++.++................+..- .-....+.||
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d--------~~k~v~LqIW 88 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD--------SERDFFVELW 88 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc--------CCceEEEEEE
Confidence 44555679999999999999999999988876666666554432221111000000000000 0000129999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC---------------CCCEEEEEecccccC
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK---------------KTPFVVALNKIDRLY 160 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~---------------~~piivv~NK~D~~~ 160 (259)
||+|++.|..++..+++.+|++|+|+|+++..+..... |+..+... ++|+++|+||+|+..
T Consensus 89 DTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 89 DVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999999999999999866655543 55555432 378999999999863
No 222
>KOG0461|consensus
Probab=99.76 E-value=2.5e-18 Score=140.40 Aligned_cols=194 Identities=23% Similarity=0.281 Sum_probs=137.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc-------cCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN-------VQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
.|++++|+.++|||||.++|.... -.+...++++-+.|.....+.....-. ....-+++
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLp--------------q~e~lq~t 73 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLP--------------QGEQLQFT 73 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccC--------------ccccceeE
Confidence 579999999999999999995321 112223456666665555443322111 11112499
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcc-cccchhhHHHHHhh
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNW-NTMNRRDVRDIIKS 176 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~-~~~~~~~~~~~~~~ 176 (259)
++|||||...........+..|+.++|+|+..+.+.+..+.+-.-.....+.++|+||+|..... .....++....+++
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~K 153 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRK 153 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999888777777778899999999987431 11222333333333
Q ss_pred hhcc----ccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHH
Q psy6316 177 QESS----VQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDL 252 (259)
Q Consensus 177 ~~~~----~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i 252 (259)
..+. .+.+++++||+.|+-- .+.+.|..+++.+.+-.|.++...||+|.+
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~--------------------------~~~i~eL~e~l~s~if~P~Rd~~gpflm~v 207 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFK--------------------------EEMIQELKEALESRIFEPKRDEEGPFLMAV 207 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccc--------------------------hhHHHHHHHHHHHhhcCCCcCCCCCeEEEe
Confidence 3332 2468889999988321 122345566677778899999999999999
Q ss_pred HHhhcc
Q psy6316 253 KKVFQI 258 (259)
Q Consensus 253 ~~~~~~ 258 (259)
+++|.|
T Consensus 208 DHCF~I 213 (522)
T KOG0461|consen 208 DHCFAI 213 (522)
T ss_pred eeeEEe
Confidence 999987
No 223
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.76 E-value=9e-19 Score=158.56 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=95.9
Q ss_pred eeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcchHHH
Q psy6316 31 GHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNL 110 (259)
Q Consensus 31 G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 110 (259)
|.+|+|||||+|+|.+..+...+.++.+.+....... +...++++|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~-----------------------~~~~~i~lvDtPG~~~~~~~ 57 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLG-----------------------FQGEDIEIVDLPGIYSLTTF 57 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEE-----------------------ECCeEEEEEECCCccccCcc
Confidence 8999999999999998765433333222211110000 01113899999998765432
Q ss_pred ------HHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 111 ------RNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 111 ------~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
...++ +.+|++++|+|+++. ........++.+.++|+++++||+|+... .......+.+.+.++
T Consensus 58 s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i~~d~~~L~~~lg 129 (591)
T TIGR00437 58 SLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGIRIDEEKLEERLG 129 (591)
T ss_pred chHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCChhhHHHHHHHcC
Confidence 22232 479999999999763 33455666677789999999999998632 112222344445557
Q ss_pred ccccccccccCcceeEEeecCCC
Q psy6316 183 THKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+++++||++|+|++++++.+..
T Consensus 130 ~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 130 VPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998776644
No 224
>KOG0081|consensus
Probab=99.75 E-value=2.2e-19 Score=130.66 Aligned_cols=155 Identities=20% Similarity=0.164 Sum_probs=111.0
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
++.+|.+|+||||++.+....++......+++.++......... .+.++ .+.....++.+|||+|+++
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s--------~gp~g----~gr~~rihLQlWDTAGQER 79 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNS--------SGPGG----GGRGQRIHLQLWDTAGQER 79 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEec--------cCCCC----CCcceEEEEeeeccccHHH
Confidence 67899999999999999988887655433343332211111100 00000 0122222489999999999
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhC----CCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSK----KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~----~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
|+++...++++|-++++++|.++..+.-+ ..|+.+++.. +-.+++++||+|+.. .+..-......+....
T Consensus 80 FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-----~R~Vs~~qa~~La~ky 154 (219)
T KOG0081|consen 80 FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-----QRVVSEDQAAALADKY 154 (219)
T ss_pred HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-----hhhhhHHHHHHHHHHh
Confidence 99999999999999999999998766655 4577887763 345888999999974 2333445566777888
Q ss_pred cccccccccccCcceeE
Q psy6316 182 QTHKTVESARKGQEICI 198 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~ 198 (259)
+.++|++||-+|.++++
T Consensus 155 glPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 155 GLPYFETSACTGTNVEK 171 (219)
T ss_pred CCCeeeeccccCcCHHH
Confidence 99999999999999976
No 225
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.75 E-value=1.8e-18 Score=129.76 Aligned_cols=149 Identities=21% Similarity=0.232 Sum_probs=95.6
Q ss_pred EEeeCCCChhHHHhHHhccccC-CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcch
Q psy6316 29 VLGHVDTGKTKILDKLRRTNVQ-DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESF 107 (259)
Q Consensus 29 v~G~~~~GKStlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 107 (259)
++|++|+|||||++++.+.... .....+. ........... .....+.+||+||+..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~---------------------~~~~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD---------------------GKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC---------------------CEEEEEEEEecCChHHH
Confidence 5899999999999999887652 1111111 11110000000 00112999999999888
Q ss_pred HHHHHhhccCCCeEEEEEeCCCCCCHHHHHHH-----HHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 108 SNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 108 ~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l-----~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
...+...++.+|++++|+|++..........+ ......+.|+++++||+|+...... ... ...........
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~---~~~-~~~~~~~~~~~ 134 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV---SEE-ELAEQLAKELG 134 (157)
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch---HHH-HHHHHHHhhcC
Confidence 88888888999999999999886555444432 2334467999999999998743211 111 01222233345
Q ss_pred ccccccccccCcceeEEeecC
Q psy6316 183 THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++++|++++.|+.+++..+
T Consensus 135 ~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 135 VPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred CcEEEEecCCCCChHHHHHHH
Confidence 788899999999987755443
No 226
>KOG0097|consensus
Probab=99.75 E-value=4.7e-18 Score=121.46 Aligned_cols=149 Identities=18% Similarity=0.161 Sum_probs=112.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+-.++|..|+|||+|+..+...++-..-..+++..++.....+.... + .+.+|||+|+
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk-----i----------------klqiwdtagq 70 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK-----I----------------KLQIWDTAGQ 70 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE-----E----------------EEEEeecccH
Confidence 348899999999999999999988876665666666654433332211 1 2999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhC---CCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSK---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++|+....++++.+-++++|+|.+...+...+. |+.-.+.. +.-++++.||+|+.. .++...+..+.+...
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-----qrdv~yeeak~faee 145 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-----QRDVTYEEAKEFAEE 145 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-----cccCcHHHHHHHHhh
Confidence 999999999999999999999998876665554 44444444 344778999999864 234444555666666
Q ss_pred ccccccccccccCcceeEE
Q psy6316 181 VQTHKTVESARKGQEICIK 199 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~ 199 (259)
.+.-++.+||++|.+++..
T Consensus 146 ngl~fle~saktg~nveda 164 (215)
T KOG0097|consen 146 NGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cCeEEEEecccccCcHHHH
Confidence 6778889999999999763
No 227
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.75 E-value=7.7e-18 Score=129.12 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=93.6
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
|+++|.+|+|||||+|.|.+........+..+.+. ..... ..+. .+++|||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~-----~~~~~--------~~~~-----------~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQ-----LINFF--------NVND-----------KFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcce-----eEEEE--------EccC-----------eEEEecCCCccc
Confidence 89999999999999999985444322221111111 00000 0000 299999999543
Q ss_pred ----------hHHHHHhhc---cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 107 ----------FSNLRNRGS---SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 107 ----------~~~~~~~~~---~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
+......++ ..++++++++|.+...+......+..+...+.|+++++||+|+.... ........
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~---~~~~~~~~ 134 (170)
T cd01876 58 AKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKS---ELAKALKE 134 (170)
T ss_pred cccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChH---HHHHHHHH
Confidence 233333333 35688999999987766667777788888889999999999986321 12222222
Q ss_pred Hhhhhc--cccccccccccccCcceeEEee
Q psy6316 174 IKSQES--SVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 174 ~~~~~~--~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
+..... ....+++++||+++.|+.+++.
T Consensus 135 ~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 135 IKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred HHHHHHhccCCCceEEEecCCCCCHHHHHH
Confidence 332222 3346778999999998877443
No 228
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=5.1e-18 Score=128.58 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=95.5
Q ss_pred EEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcchH
Q psy6316 29 VLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFS 108 (259)
Q Consensus 29 v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 108 (259)
++|++|+|||||+++|.+...... ....+ ++........... ....+.+|||||+..+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-----SPVPG-TTTDPVEYVWELG---------------PLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-----CCCCC-cEECCeEEEEEec---------------CCCcEEEEECCCCCccc
Confidence 589999999999999987655311 00001 1111100000000 01139999999966543
Q ss_pred -------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH-HHhhhhcc
Q psy6316 109 -------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD-IIKSQESS 180 (259)
Q Consensus 109 -------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~ 180 (259)
......++.+|++++|+|+..........+.......+.|+++|+||+|+.... ....... ........
T Consensus 60 ~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~ 136 (163)
T cd00880 60 GLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE---EEEELLELRLLILLLL 136 (163)
T ss_pred cchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh---hHHHHHHHHHhhcccc
Confidence 344457789999999999998877766666677777899999999999997431 1111110 11222333
Q ss_pred ccccccccccccCcceeEEeec
Q psy6316 181 VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
...+++++||+++.|+..++..
T Consensus 137 ~~~~~~~~sa~~~~~v~~l~~~ 158 (163)
T cd00880 137 LGLPVIAVSALTGEGIDELREA 158 (163)
T ss_pred cCCceEEEeeeccCCHHHHHHH
Confidence 4577889999999998775443
No 229
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.74 E-value=6.5e-17 Score=149.78 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=100.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec-cccccCc-cccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI-GATNVPA-DAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.++|+++|++|+|||||+++|+...-.... ++... +.+..+. ...+.....+... .....+...+++||||
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~---~~~~~~g~~~~D~~~~e~~rgiti~~~----~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHK---IGEVHDGAATMDWMEQEKERGITITSA----ATTVFWKGHRINIIDT 82 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccc---cccccCCccccCCCHHHHhcCCCEecc----eEEEEECCeEEEEEEC
Confidence 458999999999999999999753211000 00000 0000000 0000000000000 0001122334999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||+.++...+..+++.+|++++|+|++++...++..++..+...++|+++++||+|+... ......+.+.......
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~----~~~~~~~~i~~~l~~~ 158 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA----NFLRVVNQIKQRLGAN 158 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCC
Confidence 999998888889999999999999999998888888999999899999999999999743 2333444444433322
Q ss_pred cc-cccccccccC
Q psy6316 182 QT-HKTVESARKG 193 (259)
Q Consensus 182 ~~-~~i~~Sa~~g 193 (259)
.+ ..+++|+..+
T Consensus 159 ~~~~~ipis~~~~ 171 (689)
T TIGR00484 159 AVPIQLPIGAEDN 171 (689)
T ss_pred ceeEEeccccCCC
Confidence 22 3467898766
No 230
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=4.6e-18 Score=124.77 Aligned_cols=134 Identities=19% Similarity=0.159 Sum_probs=88.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC--
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG-- 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG-- 103 (259)
+|.++|++|||||||+++|.+....... .+... +. =.+|||||
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--------------Tq~i~------------------~~---~~~IDTPGEy 47 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--------------TQAIE------------------YY---DNTIDTPGEY 47 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--------------cceeE------------------ec---ccEEECChhh
Confidence 6999999999999999999776542110 00000 00 24699999
Q ss_pred --CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 104 --HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 104 --~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
...|...+.....+||++++|.|+++....-.-.+ ....+.|+|-|+||+|+..+ ..+ .+..+++....
T Consensus 48 iE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~f---a~~f~~pvIGVITK~Dl~~~-----~~~-i~~a~~~L~~a 118 (143)
T PF10662_consen 48 IENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGF---ASMFNKPVIGVITKIDLPSD-----DAN-IERAKKWLKNA 118 (143)
T ss_pred eeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchh---hcccCCCEEEEEECccCccc-----hhh-HHHHHHHHHHc
Confidence 45566666777789999999999987543322222 23457899999999999732 112 22222233222
Q ss_pred cc-cccccccccCcceeEEeecC
Q psy6316 182 QT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 ~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
++ .+|.+|+.+|+|++++.+.+
T Consensus 119 G~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 119 GVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCeEEEECCCCcCHHHHHHHH
Confidence 33 56789999999998865543
No 231
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=147.61 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCeEEEeCCCCcc-----hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCC--CCEEEEEecccccCcccccc
Q psy6316 94 PGLLIIDTPGHES-----FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK--TPFVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 94 ~~~~liDtpG~~~-----~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~--~piivv~NK~D~~~~~~~~~ 166 (259)
.+++|+||||... +...+...+..+|+++||+|++...+..+..+++.++..+ .|+++|+||+|+...+ ...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre-edd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN-SDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc-cch
Confidence 4699999999422 3445667889999999999998888888888888888877 4999999999986322 112
Q ss_pred hhhHHHHHhhhh--ccc-cccccccccccCcceeEEeecCCCC
Q psy6316 167 RRDVRDIIKSQE--SSV-QTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 167 ~~~~~~~~~~~~--~~~-~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.+.+...+.... ... ...++++||++|.|++.++..+...
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 344555444332 122 2367899999999999987777553
No 232
>KOG0395|consensus
Probab=99.74 E-value=2.9e-18 Score=134.47 Aligned_cols=158 Identities=20% Similarity=0.138 Sum_probs=118.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||+|+.++.+..+...+.++++..+... ...+ .... .+.|+||+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~-~~v~-----~~~~----------------~l~ilDt~ 59 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKE-LTVD-----GEVC----------------MLEILDTA 59 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEE-EEEC-----CEEE----------------EEEEEcCC
Confidence 345699999999999999999999999888777776333211 1111 0111 28899999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|+.++..+...++..+|++++|++.++..+.+... +..++.+ ..+|+++|+||+|+... +....+.-+.+
T Consensus 60 g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~-----R~V~~eeg~~l 134 (196)
T KOG0395|consen 60 GQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE-----RQVSEEEGKAL 134 (196)
T ss_pred CcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc-----cccCHHHHHHH
Confidence 99999999999999999999999999987777654 3333322 34799999999999742 33334445555
Q ss_pred hccccccccccccccCcceeEEeecCCCCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~ 207 (259)
...+.+.++++||+...++++++..++.+.
T Consensus 135 a~~~~~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 135 ARSWGCAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred HHhcCCcEEEeeccCCcCHHHHHHHHHHHH
Confidence 777888988999999999998776665543
No 233
>KOG0070|consensus
Probab=99.74 E-value=1.8e-18 Score=129.94 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=104.2
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
.++| |+++|-.+|||||++++|...++... -+++ |.+...+ .|++..+++|
T Consensus 16 ~e~~---IlmlGLD~AGKTTILykLk~~E~vtt-vPTi----GfnVE~v---------------------~ykn~~f~vW 66 (181)
T KOG0070|consen 16 KEMR---ILMVGLDAAGKTTILYKLKLGEIVTT-VPTI----GFNVETV---------------------EYKNISFTVW 66 (181)
T ss_pred ceEE---EEEEeccCCCceeeeEeeccCCcccC-CCcc----ccceeEE---------------------EEcceEEEEE
Confidence 4556 99999999999999999976665432 1222 2111111 1222239999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-H-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-I-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
|..|+..++..|..|++..+++|||+|+++.....+ + ++...+.. .+.|+++..||.|+...- +..++.+.+
T Consensus 67 DvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al---s~~ei~~~L 143 (181)
T KOG0070|consen 67 DVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL---SAAEITNKL 143 (181)
T ss_pred ecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC---CHHHHHhHh
Confidence 999999999999999999999999999987544332 2 23333333 368999999999998543 233344433
Q ss_pred hhh-hccccccccccccccCcceeEEeecC
Q psy6316 175 KSQ-ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~-~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
... .....|.+..++|.+|+|+.+.++.+
T Consensus 144 ~l~~l~~~~w~iq~~~a~~G~GL~egl~wl 173 (181)
T KOG0070|consen 144 GLHSLRSRNWHIQSTCAISGEGLYEGLDWL 173 (181)
T ss_pred hhhccCCCCcEEeeccccccccHHHHHHHH
Confidence 322 22357788899999999997754433
No 234
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1.5e-18 Score=146.96 Aligned_cols=169 Identities=28% Similarity=0.353 Sum_probs=123.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc---------------CCCCCCcceeeccccccCccccccccccccCCCCCCCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV---------------QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGP 88 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (259)
.+|+.++.+-++|||||..+|+...- .-...++++...-......... . +
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-------~---g----- 73 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-------D---G----- 73 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-------C---C-----
Confidence 45899999999999999999964311 0011122222111111111000 0 0
Q ss_pred CCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchh
Q psy6316 89 GPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 89 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
..| .++++|||||.+|.....+.+..|.++++|+|++.+...|+........+.+.-+|.|+||+|++.. ..+
T Consensus 74 ~~Y---~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A----dpe 146 (603)
T COG0481 74 ETY---VLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA----DPE 146 (603)
T ss_pred CEE---EEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC----CHH
Confidence 022 2999999999999999999999999999999999999999999888888999999999999999865 345
Q ss_pred hHHHHHhhhhccccccccccccccCcceeEEeecCCCCCCcccccC
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRH 214 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~ 214 (259)
...+.++.....-....+.+||++|.|++++++++....|...+..
T Consensus 147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 5566666555444456788999999999999998888777655443
No 235
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.9e-18 Score=139.82 Aligned_cols=178 Identities=24% Similarity=0.287 Sum_probs=119.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc---CCCCCCcceeeccccccCccccccccccccCCCCCCCCC-C---CCCCCCe
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV---QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGP-G---PLEIPGL 96 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ 96 (259)
..||+++|+.++|||||..+|.+-.. .+.-.+.++...|+....+..=.+.... .+......|+ + .-..+.+
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEEEE
Confidence 45799999999999999999987643 2333456777777666554332222111 1111111111 1 1223359
Q ss_pred EEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-CCHHHHHHHHHHHhCCC-CEEEEEecccccCccccc-chhhHHHH
Q psy6316 97 LIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-LEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTM-NRRDVRDI 173 (259)
Q Consensus 97 ~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~-~~~~~~~~ 173 (259)
.|+|+|||+-.-..+.+.....|++++|+.++++ .++|+.+++-.+.-.++ .+|++-||+|+...+... ++++++++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~F 168 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEF 168 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHH
Confidence 9999999998877778888889999999999875 67889999988888775 588899999999543221 22333333
Q ss_pred HhhhhccccccccccccccCcceeEEeecC
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++-.. .-+.+++++||..+.|++.+++.+
T Consensus 169 vkGt~-Ae~aPIIPiSA~~~~NIDal~e~i 197 (415)
T COG5257 169 VKGTV-AENAPIIPISAQHKANIDALIEAI 197 (415)
T ss_pred hcccc-cCCCceeeehhhhccCHHHHHHHH
Confidence 32222 125689999999999997744444
No 236
>KOG0075|consensus
Probab=99.73 E-value=2.7e-18 Score=123.41 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=105.0
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.|+ +.++|-.++|||||+|.+...++.+. +..+.|+........ .+ .+.+||
T Consensus 20 eme---l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tkg-----nv----------------tiklwD 71 (186)
T KOG0075|consen 20 EME---LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTKG-----NV----------------TIKLWD 71 (186)
T ss_pred eee---EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEeccC-----ce----------------EEEEEe
Confidence 466 99999999999999999977666543 344444444432211 11 189999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCC-HHHHHHHH----HHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLE-PQTIESIN----ILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~-~~~~~~l~----~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
.||+..|..+|..+++.+++++||+|+.++.. ...+.-+. ...-.++|+++++||.|+... ....++..++.
T Consensus 72 ~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A---L~~~~li~rmg 148 (186)
T KOG0075|consen 72 LGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA---LSKIALIERMG 148 (186)
T ss_pred cCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc---ccHHHHHHHhC
Confidence 99999999999999999999999999987422 11222222 223357999999999999853 23344444333
Q ss_pred hhh-ccccccccccccccCcceeEEeecC
Q psy6316 176 SQE-SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~-~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
... ....+.++.+||+...+++..++.+
T Consensus 149 L~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 149 LSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred ccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 221 2235678889999999988755444
No 237
>PRK00007 elongation factor G; Reviewed
Probab=99.73 E-value=4.1e-17 Score=150.98 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=102.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccc-cccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGA-TNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.++|+++|++|+|||||+++|+...-.....+........ ...+.+..+.. .+.... ....+....++|+|||
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~--ti~~~~----~~~~~~~~~~~liDTP 83 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGI--TITSAA----TTCFWKDHRINIIDTP 83 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCC--CEeccE----EEEEECCeEEEEEeCC
Confidence 4589999999999999999997421100000000000000 00000000000 000000 0011222349999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
||.+|.......++.+|++|+|+|+..+...++...+.++...++|+++++||+|+... ......+.+++......
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~----~~~~~~~~i~~~l~~~~ 159 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA----DFYRVVEQIKDRLGANP 159 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCCe
Confidence 99999888888999999999999999999999999999999999999999999998743 23333344433333222
Q ss_pred -ccccccccccC-cceeE
Q psy6316 183 -THKTVESARKG-QEICI 198 (259)
Q Consensus 183 -~~~i~~Sa~~g-~gv~~ 198 (259)
...+++||..+ .|+..
T Consensus 160 ~~~~ipisa~~~f~g~~d 177 (693)
T PRK00007 160 VPIQLPIGAEDDFKGVVD 177 (693)
T ss_pred eeEEecCccCCcceEEEE
Confidence 24568898877 34444
No 238
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.72 E-value=2e-17 Score=132.87 Aligned_cols=116 Identities=24% Similarity=0.280 Sum_probs=88.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|||||||+++|.+..+...+..+++..+.......... .+ .+.+|||+|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~----------------~~~~~Dt~gq 64 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-----NI----------------KLQLWDTAGQ 64 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-----EE----------------EEEeecCCCH
Confidence 45999999999999999999999988777766655554333332211 11 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCC-HH-HHHHHHHHHhC---CCCEEEEEecccccCc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLE-PQ-TIESINILKSK---KTPFVVALNKIDRLYN 161 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~-~~-~~~~l~~~~~~---~~piivv~NK~D~~~~ 161 (259)
+++...+..++..++++++|+|.+.... .. ...+...+... +.|+++++||+|+...
T Consensus 65 ~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 65 EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 9999999999999999999999986322 22 23455555553 4899999999999853
No 239
>KOG0083|consensus
Probab=99.72 E-value=1.4e-18 Score=122.96 Aligned_cols=149 Identities=20% Similarity=0.185 Sum_probs=106.3
Q ss_pred EEeeCCCChhHHHhHHhccccCCCCCC-cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcch
Q psy6316 29 VLGHVDTGKTKILDKLRRTNVQDGEAG-GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESF 107 (259)
Q Consensus 29 v~G~~~~GKStlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 107 (259)
++|.+++|||+|+-++-...+..+... +++.++.-.-..... .. ..+++|||+||++|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~-----~k----------------vklqiwdtagqerf 60 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDD-----KK----------------VKLQIWDTAGQERF 60 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCC-----cE----------------EEEEEeeccchHHH
Confidence 689999999999998877777654322 222222111111111 11 12999999999999
Q ss_pred HHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC---CCCEEEEEecccccCcccccchhhHHHHHhhhhccccc
Q psy6316 108 SNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQT 183 (259)
Q Consensus 108 ~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (259)
++....+++.+|++++++|..+..+..+. .|+.++.+. .+.+.+++||+|+.. +.... .+.-+++.+..++
T Consensus 61 rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~----~ddg~kla~~y~i 135 (192)
T KOG0083|consen 61 RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVK----RDDGEKLAEAYGI 135 (192)
T ss_pred hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccc----cchHHHHHHHHCC
Confidence 99999999999999999999998887764 477777765 356778999999963 22222 2233455566678
Q ss_pred cccccccccCcceeEEeecC
Q psy6316 184 HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 184 ~~i~~Sa~~g~gv~~~l~~i 203 (259)
++.++||++|.+++..+..+
T Consensus 136 pfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 136 PFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred CceeccccccccHhHHHHHH
Confidence 99999999999998755444
No 240
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=9e-17 Score=131.08 Aligned_cols=161 Identities=21% Similarity=0.219 Sum_probs=101.9
Q ss_pred hhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCC
Q psy6316 7 KRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86 (259)
Q Consensus 7 ~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (259)
+.++.+...|..-++++ .|+|.|.||+|||||++.+.+.+.. ...+.+||....- ++
T Consensus 153 ~~r~~l~~LP~Idp~~p--TivVaG~PNVGKSSlv~~lT~AkpE-------vA~YPFTTK~i~v-----Gh--------- 209 (346)
T COG1084 153 KARDHLKKLPAIDPDLP--TIVVAGYPNVGKSSLVRKLTTAKPE-------VAPYPFTTKGIHV-----GH--------- 209 (346)
T ss_pred HHHHHHhcCCCCCCCCC--eEEEecCCCCcHHHHHHHHhcCCCc-------cCCCCccccceeE-----ee---------
Confidence 66778888888766655 7999999999999999999888763 3334444433221 11
Q ss_pred CCCCCCCCCeEEEeCCCCcc--------hHHHHHhhc-cCCCeEEEEEeCCCCCCH---HHHHHHHHHHh-CCCCEEEEE
Q psy6316 87 GPGPLEIPGLLIIDTPGHES--------FSNLRNRGS-SLCDIAILVVDIMHGLEP---QTIESINILKS-KKTPFVVAL 153 (259)
Q Consensus 87 ~~~~~~~~~~~liDtpG~~~--------~~~~~~~~~-~~ad~~i~v~d~~~~~~~---~~~~~l~~~~~-~~~piivv~ 153 (259)
.++....++++||||.-+ .......++ +..++++|++|++..... ....++..++. .+.|+++|+
T Consensus 210 --fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~ 287 (346)
T COG1084 210 --FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVI 287 (346)
T ss_pred --eecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 123333499999999221 111122233 678999999999864332 23445666665 468999999
Q ss_pred ecccccCcccccchhhHHHHHhhhhccccccccccccccCcceeE
Q psy6316 154 NKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 154 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
||+|.... +...+...............+|+..+.+.+.
T Consensus 288 nK~D~~~~------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 288 NKIDIADE------EKLEEIEASVLEEGGEEPLKISATKGCGLDK 326 (346)
T ss_pred ecccccch------hHHHHHHHHHHhhccccccceeeeehhhHHH
Confidence 99998732 2233322223333334456677777766655
No 241
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=6.1e-17 Score=149.91 Aligned_cols=162 Identities=21% Similarity=0.227 Sum_probs=101.8
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec-cccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI-GATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
+..+|+++|++|+|||||+++|+...-.....+...... .....+.+..+........ ....+...+++||||
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~------~~~~~~~~~i~liDT 80 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAA------TTCFWKGHRINIIDT 80 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCcccee------EEEEECCEEEEEEcC
Confidence 456899999999999999999975311000000000000 0000000010000000000 001122234999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||+.+|...+..+++.+|++++|+|+..+...++...+..+...++|+++++||+|+... ......+.++......
T Consensus 81 PG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~----~~~~~~~~i~~~l~~~ 156 (691)
T PRK12739 81 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA----DFFRSVEQIKDRLGAN 156 (691)
T ss_pred CCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC----CHHHHHHHHHHHhCCC
Confidence 999999888999999999999999999999999999999999999999999999999843 2334444444433322
Q ss_pred c-ccccccccccCc
Q psy6316 182 Q-THKTVESARKGQ 194 (259)
Q Consensus 182 ~-~~~i~~Sa~~g~ 194 (259)
. ...+++|+..+.
T Consensus 157 ~~~~~iPis~~~~f 170 (691)
T PRK12739 157 AVPIQLPIGAEDDF 170 (691)
T ss_pred ceeEEecccccccc
Confidence 2 234578887665
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=4.3e-17 Score=128.83 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=73.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+|+|++...........+ ...++..... +.. .....+.+|||||.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~--~~~~t~~~~~-------~~~----------~~~~~l~l~DtpG~ 62 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG--VVETTMKRTP-------YPH----------PKFPNVTLWDLPGI 62 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC--ccccccCcee-------eec----------CCCCCceEEeCCCC
Confidence 4699999999999999999988654221110011 0000100000 000 00123999999996
Q ss_pred cchHH-----HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 105 ESFSN-----LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 105 ~~~~~-----~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
..... +....+..+|++++|.+ .+++..+..++..+...+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 63 GSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 43211 11223578899988855 45677788888888888999999999999964
No 243
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.71 E-value=1.7e-16 Score=125.94 Aligned_cols=115 Identities=21% Similarity=0.259 Sum_probs=76.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|++|+|||||+++|....+...... ............. -....+.+||||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-~~~~~~~~~~~~~---------------------~~~~~~~l~D~pG~ 58 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-IEPNVATFILNSE---------------------GKGKKFRLVDVPGH 58 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-EeecceEEEeecC---------------------CCCceEEEEECCCC
Confidence 4699999999999999999988765433211 1111110000000 00112999999999
Q ss_pred cchHHHHHhhccCC-CeEEEEEeCCCCC-CHHH-HHHHHHH----H--hCCCCEEEEEecccccCc
Q psy6316 105 ESFSNLRNRGSSLC-DIAILVVDIMHGL-EPQT-IESINIL----K--SKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 105 ~~~~~~~~~~~~~a-d~~i~v~d~~~~~-~~~~-~~~l~~~----~--~~~~piivv~NK~D~~~~ 161 (259)
..+...+..+++.+ +++|||+|+++.. ...+ .+++..+ . ..++|+++++||+|+...
T Consensus 59 ~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 59 PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99999988899988 9999999998752 2221 2232221 1 247999999999998753
No 244
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=5.9e-17 Score=144.67 Aligned_cols=131 Identities=28% Similarity=0.373 Sum_probs=86.4
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec--ccc-c--cCccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI--GAT-N--VPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
.++|+++|++|+|||||+++|+...-.....+.+.... ..+ . .+.+..+... +... .....+....+++
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiS--i~~~----~~~~~~~~~~inl 83 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGIS--VTSS----VMQFPYRDCLINL 83 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCc--eeee----eEEEEECCEEEEE
Confidence 45899999999999999999974211101111110000 000 0 0011110000 0000 0001222334999
Q ss_pred EeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 99 IDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 99 iDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
||||||.+|......+++.+|++|+|+|++++...+...++......++|+++++||+|+..
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 99999999998888899999999999999998888888888888889999999999999874
No 245
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.70 E-value=9.4e-17 Score=135.87 Aligned_cols=198 Identities=22% Similarity=0.222 Sum_probs=127.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc--cCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN--VQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+|||++.+.++|||||+..|+.+. +.... .+. .....+...++.+ .-.+-..++. ..|+...++|+|||
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e--~v~-ERvMDSnDlEkER--GITILaKnTa----v~~~~~~INIvDTP 76 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFRERE--EVA-ERVMDSNDLEKER--GITILAKNTA----VNYNGTRINIVDTP 76 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhcccccccc--chh-hhhcCccchhhhc--CcEEEeccce----eecCCeEEEEecCC
Confidence 489999999999999999997542 11100 000 0000111111111 1111111110 12334459999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---hc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ---ES 179 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~---~~ 179 (259)
||.+|.-...+.++-.|++++++|+.++..+|++-.++...+.+.+.|+|+||+|..........++..+.+..+ ..
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred CcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence 999999999999999999999999999999999999999999999999999999998654333334444433333 34
Q ss_pred cccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHH
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVD 251 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~ 251 (259)
.+.+++++.||+.|.--.. .+.+ ... ..-..+.+-++.+.|.-+.+.||-|.
T Consensus 157 QLdFPivYAS~~~G~a~~~------~~~~---------~~~-----m~pLfe~I~~hvp~P~~~~d~PlQ~q 208 (603)
T COG1217 157 QLDFPIVYASARNGTASLD------PEDE---------ADD-----MAPLFETILDHVPAPKGDLDEPLQMQ 208 (603)
T ss_pred hCCCcEEEeeccCceeccC------cccc---------ccc-----hhHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 5678999999998753321 0000 000 12344555566777777777777653
No 246
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.70 E-value=4.6e-17 Score=153.33 Aligned_cols=122 Identities=57% Similarity=0.890 Sum_probs=96.6
Q ss_pred ChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcchHHHHHhhc
Q psy6316 36 GKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGS 115 (259)
Q Consensus 36 GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 115 (259)
+||||+.+|.+.++..++.++++..+|++..+.+............ .........+.|||||||+.|..+....+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~-----~~~~~~~p~i~fiDTPGhe~F~~lr~~g~ 547 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKL-----LKAEIKIPGLLFIDTPGHEAFTSLRKRGG 547 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEeccccccccccccc-----ccccCCcCcEEEEECCCcHHHHHHHHhhc
Confidence 4999999999999999999999999999887765322111100000 00012223499999999999999888888
Q ss_pred cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcc
Q psy6316 116 SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNW 162 (259)
Q Consensus 116 ~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~ 162 (259)
+.+|++++|+|++++...++.+.+..+...++|+++|+||+|+...+
T Consensus 548 ~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~ 594 (1049)
T PRK14845 548 SLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGW 594 (1049)
T ss_pred ccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccc
Confidence 99999999999999989999999999988899999999999997543
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=1.7e-16 Score=114.72 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=69.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+|+|++.+.. .......++........ .+....+.|+||||..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~------~~~~~~~~T~~~~~~~~----------------~~~~~~~~~vDtpG~~ 58 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA------KVSNIPGTTRDPVYGQF----------------EYNNKKFILVDTPGIN 58 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS------EESSSTTSSSSEEEEEE----------------EETTEEEEEEESSSCS
T ss_pred CEEEECCCCCCHHHHHHHHhccccc------cccccccceeeeeeeee----------------eeceeeEEEEeCCCCc
Confidence 3999999999999999999975431 11111111111110000 0111138999999943
Q ss_pred c---------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEec
Q psy6316 106 S---------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNK 155 (259)
Q Consensus 106 ~---------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK 155 (259)
. ........+..+|++++|+|+++........++..++ .++|+++|+||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 59 DGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred ccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2 1112334458999999999987744455667778886 88999999998
No 248
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.7e-17 Score=138.01 Aligned_cols=177 Identities=24% Similarity=0.261 Sum_probs=131.1
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc---CCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV---QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.|+.+|+..+|||||+.++.+... .+...++++.+.++...+.+.. .+.|+|.|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~-----------------------~~~fIDvp 58 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG-----------------------VMGFIDVP 58 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC-----------------------ceEEeeCC
Confidence 489999999999999999976643 2223345666666665554322 29999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE-EEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPF-VVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi-ivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
||+++.+.+...+...|.+++|++++++...++.+++..+...+++- ++|+||+|+.... ..++..+.+......-
T Consensus 59 gh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~---r~e~~i~~Il~~l~l~ 135 (447)
T COG3276 59 GHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA---RIEQKIKQILADLSLA 135 (447)
T ss_pred CcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH---HHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999875 8999999998432 1122222222222222
Q ss_pred cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhcc
Q psy6316 182 QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 258 (259)
..+++.+|+.+|+|++++- +.+-.+ ...+.++.+.+|+++|+++|++
T Consensus 136 ~~~i~~~s~~~g~GI~~Lk---------------------------~~l~~L---~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 136 NAKIFKTSAKTGRGIEELK---------------------------NELIDL---LEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred cccccccccccCCCHHHHH---------------------------HHHHHh---hhhhhhccCCceEEEEeeEEEe
Confidence 4567889999999997611 122111 1256678888999999999986
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=2e-16 Score=141.35 Aligned_cols=150 Identities=22% Similarity=0.290 Sum_probs=92.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceee--ccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQ--IGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
+.++|+++|++|+|||||+++|+...-.....+.+... ...+..+... .+...++...- ......+....++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~-~E~~rgisi~~--~~~~~~~~~~~inliD 86 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWME-MEKQRGISITT--SVMQFPYRDCLVNLLD 86 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCH-HHHhcCCcEEE--EEEEEeeCCeEEEEEE
Confidence 34589999999999999999986321110000111000 0000111000 00000000000 0000122333499999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
|||+.+|......+++.+|++|+|+|++.+...+...++..++..++|+++++||+|+... ...++.+.++....
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~----~~~~ll~~i~~~l~ 161 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR----DPLELLDEVENELK 161 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC----CHHHHHHHHHHHhC
Confidence 9999999888888899999999999999988877788888888889999999999998632 23445555555443
No 250
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=5.7e-17 Score=129.32 Aligned_cols=166 Identities=13% Similarity=0.188 Sum_probs=111.0
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..++.+|+++|.+|+|||||+|+|+..+.. ....++..+.+........ ....++|||
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~------~v~~vg~~t~~~~~~~~~~----------------~~~~l~lwD 93 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVK------EVSKVGVGTDITTRLRLSY----------------DGENLVLWD 93 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCc------eeeecccCCCchhhHHhhc----------------cccceEEec
Confidence 456778999999999999999999966543 2333444443332222111 111399999
Q ss_pred CCCCcc-------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEecccccCc---c---ccc
Q psy6316 101 TPGHES-------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDRLYN---W---NTM 165 (259)
Q Consensus 101 tpG~~~-------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~~~~---~---~~~ 165 (259)
|||..+ +......++...|++++++++.+.....+.+++..+.-. +.++++++|.+|+..+ | ...
T Consensus 94 tPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~ 173 (296)
T COG3596 94 TPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQ 173 (296)
T ss_pred CCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCC
Confidence 999544 677778889999999999999988777788888777653 4899999999998753 1 111
Q ss_pred chhhHHHHHhhhhccc-----cc-cccccccccCcceeEEeecCCCCCC
Q psy6316 166 NRRDVRDIIKSQESSV-----QT-HKTVESARKGQEICIKIEPIPGEAP 208 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~-----~~-~~i~~Sa~~g~gv~~~l~~i~~~~~ 208 (259)
....+.+.+++..... .. +++.+|++.+.|+..+...++...|
T Consensus 174 p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 174 PSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 2233333333332221 12 4456778999999987666654433
No 251
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.68 E-value=4.2e-17 Score=118.35 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=70.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCC-C-CCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQD-G-EAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+|+|.+|+|||||+++|++..... . .....+..+......... ....+.+||++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~d~~g 59 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG---------------------DRQSLQFWDFGG 59 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT---------------------EEEEEEEEEESS
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC---------------------CceEEEEEecCc
Confidence 49999999999999999999887641 0 000011111100000000 000189999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH----HHHHHHHh--CCCCEEEEEeccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI----ESINILKS--KKTPFVVALNKID 157 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~----~~l~~~~~--~~~piivv~NK~D 157 (259)
++.+...+...+..+|++++|+|+++..+.... .++..+.. .+.|+++|+||.|
T Consensus 60 ~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 60 QEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 988777666678999999999999876544442 23344433 4699999999998
No 252
>KOG1489|consensus
Probab=99.67 E-value=1.3e-16 Score=129.24 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=96.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.||||||||+|+|...+.. ...+.+||..+.-- .+.+.+ +. ++++-|.||.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpk-------Va~YaFTTL~P~iG-----~v~ydd--------f~--q~tVADiPGi 254 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPK-------VAHYAFTTLRPHIG-----TVNYDD--------FS--QITVADIPGI 254 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCc-------ccccceeeeccccc-----eeeccc--------cc--eeEeccCccc
Confidence 56999999999999999999887753 33444454444321 111111 11 2899999993
Q ss_pred c-------chHHHHHhhccCCCeEEEEEeCCCCC---CHHHHH-HHHHHHh-----CCCCEEEEEecccccCcccccchh
Q psy6316 105 E-------SFSNLRNRGSSLCDIAILVVDIMHGL---EPQTIE-SINILKS-----KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 105 ~-------~~~~~~~~~~~~ad~~i~v~d~~~~~---~~~~~~-~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
. -........+..|+.++||+|.+.+. -.+... ++.++.. .+.|.++|+||+|+... .
T Consensus 255 I~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e- 328 (366)
T KOG1489|consen 255 IEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----E- 328 (366)
T ss_pred cccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----H-
Confidence 2 24455667888999999999998762 222222 2233322 35899999999998621 1
Q ss_pred hHHHHHhhhhccccc-cccccccccCcceeEEeec
Q psy6316 169 DVRDIIKSQESSVQT-HKTVESARKGQEICIKIEP 202 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~ 202 (259)
...+..+.+.++- .++++||++++|+.+++..
T Consensus 329 --~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~ 361 (366)
T KOG1489|consen 329 --KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNG 361 (366)
T ss_pred --HHHHHHHHHHcCCCcEEEeeeccccchHHHHHH
Confidence 2223444444333 4889999999999875543
No 253
>KOG0076|consensus
Probab=99.67 E-value=6.5e-17 Score=119.71 Aligned_cols=155 Identities=21% Similarity=0.150 Sum_probs=101.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccC---CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQ---DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
..|++.|..+||||||+.++-..... .-....+...++.+.... .-. +..+.|||.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i----------~v~-----------~~~l~fwdl 76 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI----------EVC-----------NAPLSFWDL 76 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce----------eec-----------cceeEEEEc
Confidence 34999999999999999998433221 000111232232222211 111 112999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHH----HHHhCCCCEEEEEecccccCcccccchhhHHHHHh-
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESIN----ILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK- 175 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~----~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~- 175 (259)
.|++...++|..++..+|++++++|+++....++ ...++ .-...++|+++.+||.|+...- ...++...+.
T Consensus 77 gGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~---~~~El~~~~~~ 153 (197)
T KOG0076|consen 77 GGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM---EAAELDGVFGL 153 (197)
T ss_pred CChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh---hHHHHHHHhhh
Confidence 9999999999999999999999999988533332 22222 2233589999999999987432 2333443333
Q ss_pred -hhhccccccccccccccCcceeEEeecC
Q psy6316 176 -SQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 -~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+......+++.++||..|+|+.+-+.++
T Consensus 154 ~e~~~~rd~~~~pvSal~gegv~egi~w~ 182 (197)
T KOG0076|consen 154 AELIPRRDNPFQPVSALTGEGVKEGIEWL 182 (197)
T ss_pred hhhcCCccCccccchhhhcccHHHHHHHH
Confidence 3334445678899999999998855443
No 254
>KOG0071|consensus
Probab=99.66 E-value=9.6e-17 Score=114.60 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=102.6
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
+|| |+.+|-.++||||++..|.-.+... ...++|++ +++ + .|++..|++||
T Consensus 17 E~~---ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFn---vet-------V-----------tykN~kfNvwd 67 (180)
T KOG0071|consen 17 EMR---ILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFN---VET-------V-----------TYKNVKFNVWD 67 (180)
T ss_pred cce---EEEEecccCCceehhhHHhcCCCcc-----ccccccee---EEE-------E-----------EeeeeEEeeee
Confidence 567 9999999999999999997554321 11122211 111 1 12222399999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHH-HHH---HhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESI-NIL---KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l-~~~---~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
..|++..++.|..|+....++|||+|+.+...-.+ +.-+ ..+ .....++++..||.|+...- ..+++.+.++
T Consensus 68 vGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~le 144 (180)
T KOG0071|consen 68 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLE 144 (180)
T ss_pred ccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhc
Confidence 99999999999999999999999999876532222 1122 222 22467899999999998543 4455555443
Q ss_pred hh-hccccccccccccccCcceeEEeecC
Q psy6316 176 SQ-ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~-~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.. .....|...++||.+|.|+.+-+..+
T Consensus 145 Le~~r~~~W~vqp~~a~~gdgL~eglswl 173 (180)
T KOG0071|consen 145 LERIRDRNWYVQPSCALSGDGLKEGLSWL 173 (180)
T ss_pred cccccCCccEeeccccccchhHHHHHHHH
Confidence 22 33446788899999999997755444
No 255
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=5e-16 Score=144.12 Aligned_cols=132 Identities=23% Similarity=0.342 Sum_probs=86.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccc-ccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.++|+++|+.|+|||||+++|+...-.....+.+....... ..+.+..+.. .+... .....+....++|||||
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~--ti~~~----~~~~~~~~~~i~liDtP 81 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGI--TIESA----ATSCDWDNHRINLIDTP 81 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCC--Ccccc----eEEEEECCEEEEEEECC
Confidence 46899999999999999999975321000000000000000 0000000000 00000 00001222349999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
|+.+|...+..+++.+|++++|+|++++...+....+..+...++|+++++||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 99999999999999999999999999988888888888888889999999999998753
No 256
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.66 E-value=6.1e-16 Score=144.02 Aligned_cols=135 Identities=26% Similarity=0.254 Sum_probs=85.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.++|+++|+.++|||||+.+|+...-..... ..+........+.+..+..........-. ....-....++|+||||
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEE-LAGEQLALDFDEEEQARGITIKAANVSMV--HEYEGKEYLINLIDTPG 96 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchh-hcCcceecCccHHHHHhhhhhhccceEEE--EEecCCcEEEEEEcCCC
Confidence 3489999999999999999997532110000 00000000000000000000000000000 00000122389999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
|.+|.......++.+|++|+|+|+..+...++...+.+....++|.|+++||+|+...
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIK 154 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcc
Confidence 9999999999999999999999999998888999999888888899999999998743
No 257
>PTZ00416 elongation factor 2; Provisional
Probab=99.65 E-value=5.9e-16 Score=145.52 Aligned_cols=65 Identities=31% Similarity=0.397 Sum_probs=61.8
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
.++|+|||||.+|.......++.+|++|+|+|+..+...++...+.++...++|+++++||+|+.
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999997
No 258
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.65 E-value=1e-15 Score=142.21 Aligned_cols=80 Identities=30% Similarity=0.390 Sum_probs=66.1
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
+++||||||+.+|......+++.+|++|+|+|+..+...++...+..+...+.|.++++||+|....+.....+++...+
T Consensus 87 ~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~ 166 (720)
T TIGR00490 87 LINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERF 166 (720)
T ss_pred EEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence 49999999999999888999999999999999999888888888888888889999999999997543333333444333
No 259
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.65 E-value=5.6e-16 Score=145.94 Aligned_cols=65 Identities=31% Similarity=0.461 Sum_probs=62.2
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
++|+|||||.+|.......++.+|++|+|+|+.++...++...+.++...++|+++++||+|+..
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999983
No 260
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.4e-16 Score=140.71 Aligned_cols=147 Identities=23% Similarity=0.279 Sum_probs=97.9
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec-cccccCc-cccccccccccCCCCCCCCCCCCCC-CCeEEE
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI-GATNVPA-DAIRENTKHVRGPGGEVGGPGPLEI-PGLLII 99 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li 99 (259)
+.+||+++|+.++|||||..+|+...=.... ++... |.++.+. +..+++...+..-.. ...+.. ..++||
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k---~G~v~~g~~~~D~~e~EqeRGITI~saa~----s~~~~~~~~iNlI 81 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISK---IGEVHDGAATMDWMEQEQERGITITSAAT----TLFWKGDYRINLI 81 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCC---CccccCCCccCCCcHHHHhcCCEEeeeee----EEEEcCceEEEEe
Confidence 4568999999999999999999633210000 01000 1011110 000111100000000 001221 249999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
|||||.+|.......++.+|++++|+|+..+..++....|+++.+.++|.++++||+|....+.....+++...+..
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999976544444444444443
No 261
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=9.7e-16 Score=123.98 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=52.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+|+|.+..... ..+..++..+...... +...++++|||||+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------~~~~~tT~~~~~g~~~----------------~~~~~i~l~DtpG~~ 58 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------AAYEFTTLTCVPGVLE----------------YKGAKIQLLDLPGII 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------cCCCCccccceEEEEE----------------ECCeEEEEEECCCcc
Confidence 59999999999999999998765321 1111122111110000 111139999999964
Q ss_pred ch-------HHHHHhhccCCCeEEEEEeCCCC
Q psy6316 106 SF-------SNLRNRGSSLCDIAILVVDIMHG 130 (259)
Q Consensus 106 ~~-------~~~~~~~~~~ad~~i~v~d~~~~ 130 (259)
.. .......++.+|++++|+|+++.
T Consensus 59 ~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 59 EGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred cccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 32 23345678999999999998763
No 262
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=3.8e-15 Score=123.27 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=84.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCc------ceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGG------ITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
.+|+++|++|+|||||+|+|++..+....... ...+......... .......+ .+++
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~-i~~~g~~~----------------~l~i 67 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE-IEENGVKL----------------KLTV 67 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE-EEECCEEE----------------EEEE
Confidence 35999999999999999999988764332110 0000000000000 00000001 2999
Q ss_pred EeCCCCcchHH---------------------HHH-----hhc--cCCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCE
Q psy6316 99 IDTPGHESFSN---------------------LRN-----RGS--SLCDIAILVVDIMH-GLEPQTIESINILKSKKTPF 149 (259)
Q Consensus 99 iDtpG~~~~~~---------------------~~~-----~~~--~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~pi 149 (259)
|||||..+... ... ..+ ..+|+++|+++++. +....+.+.++.+.. ++|+
T Consensus 68 iDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~v 146 (276)
T cd01850 68 IDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNI 146 (276)
T ss_pred EecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCE
Confidence 99999433211 000 112 25899999999874 677778888888876 7999
Q ss_pred EEEEecccccCcccccchhhHHHHHhhhhccccccccc
Q psy6316 150 VVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTV 187 (259)
Q Consensus 150 ivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (259)
++|+||+|+.... ......+.+.+.....++.++.
T Consensus 147 i~VinK~D~l~~~---e~~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 147 IPVIAKADTLTPE---ELKEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred EEEEECCCcCCHH---HHHHHHHHHHHHHHHcCCceEC
Confidence 9999999997421 2233444455555444555443
No 263
>COG2262 HflX GTPases [General function prediction only]
Probab=99.63 E-value=7.6e-16 Score=129.34 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=94.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+.|+++|-+|||||||+|+|.+.... ..+.-+.+..+.+.+....+ ...+.+.||-|
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-------~~d~LFATLdpttR~~~l~~---------------g~~vlLtDTVG 249 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-------VADQLFATLDPTTRRIELGD---------------GRKVLLTDTVG 249 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-------ccccccccccCceeEEEeCC---------------CceEEEecCcc
Confidence 467999999999999999999866542 22222333333222211110 11399999999
Q ss_pred Ccc---------hHHHHHhhccCCCeEEEEEeCCCCCCHHHH----HHHHHHHhCCCCEEEEEecccccCcccccchhhH
Q psy6316 104 HES---------FSNLRNRGSSLCDIAILVVDIMHGLEPQTI----ESINILKSKKTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 104 ~~~---------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~----~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
+.+ |.+ ...-...+|++++|+|++++...... +.+..+....+|+|+|+||+|+..+ ...
T Consensus 250 FI~~LP~~LV~AFks-TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~~ 322 (411)
T COG2262 250 FIRDLPHPLVEAFKS-TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EEI 322 (411)
T ss_pred CcccCChHHHHHHHH-HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hhh
Confidence 432 211 22234689999999999987433322 2344444467899999999998843 222
Q ss_pred HHHHhhhhccccccccccccccCcceeEEeecCCC
Q psy6316 171 RDIIKSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
...+.... + ..+++||++|.|++.+...+..
T Consensus 323 ~~~~~~~~---~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 323 LAELERGS---P-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred hhhhhhcC---C-CeEEEEeccCcCHHHHHHHHHH
Confidence 22232222 2 6889999999999876555433
No 264
>KOG4252|consensus
Probab=99.62 E-value=1.4e-16 Score=118.43 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=114.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+++++|..++||||++.+++.+-+..++..+++.++......+.. +.+ ...+|||+|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-----Edv----------------r~mlWdtag 78 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-----EDV----------------RSMLWDTAG 78 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-----HHH----------------HHHHHHhcc
Confidence 45699999999999999999999888877777777555332222211 111 178999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+++|......++++|.+.++|++.++..++.. .+|.+.+.. ..+|.++|-||+|++.+. ..-....+.+++.
T Consensus 79 qeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds-----~~~~~evE~lak~ 153 (246)
T KOG4252|consen 79 QEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS-----QMDKGEVEGLAKK 153 (246)
T ss_pred chhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh-----hcchHHHHHHHHH
Confidence 99999999999999999999999988666543 455555554 479999999999998531 2223344555566
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+..+.+.+|++...++...+.++
T Consensus 154 l~~RlyRtSvked~NV~~vF~YL 176 (246)
T KOG4252|consen 154 LHKRLYRTSVKEDFNVMHVFAYL 176 (246)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHH
Confidence 67888999999988887644433
No 265
>KOG0393|consensus
Probab=99.61 E-value=3.2e-16 Score=120.70 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=108.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+++++|..++|||+|+-.+....+...+.+++-..+... ..+. ....+ .+.+|||+|
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~----dg~~v----------------~L~LwDTAG 62 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVD----DGKPV----------------ELGLWDTAG 62 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEec----CCCEE----------------EEeeeecCC
Confidence 45699999999999999999988877766666555333322 1111 01111 189999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH--HHHHHHHHhC--CCCEEEEEecccccCcccccch-------hhHHH
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT--IESINILKSK--KTPFVVALNKIDRLYNWNTMNR-------RDVRD 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~--~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~-------~~~~~ 172 (259)
+++|..++.-.+.++|+++++++..++.+..+ ..|+..++.. +.|+|+|++|.|+..+...... .-...
T Consensus 63 qedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~ 142 (198)
T KOG0393|consen 63 QEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYE 142 (198)
T ss_pred CcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHH
Confidence 99999988778899999999999988777665 3466777664 6999999999999842100000 00111
Q ss_pred HHhhhhcccc-ccccccccccCcceeEEeec
Q psy6316 173 IIKSQESSVQ-THKTVESARKGQEICIKIEP 202 (259)
Q Consensus 173 ~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~ 202 (259)
....+...++ ..++++||++..|+.+.++.
T Consensus 143 ~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~ 173 (198)
T KOG0393|consen 143 QGLELAKEIGAVKYLECSALTQKGVKEVFDE 173 (198)
T ss_pred HHHHHHHHhCcceeeeehhhhhCCcHHHHHH
Confidence 1222333334 57889999999998775543
No 266
>KOG1191|consensus
Probab=99.60 E-value=1.4e-15 Score=129.84 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=101.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
...|+++|+||+|||||+|+|..... ++......++.+.-.......+. ++.+.||+|
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~dr------sIVSpv~GTTRDaiea~v~~~G~----------------~v~L~DTAG 325 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDR------SIVSPVPGTTRDAIEAQVTVNGV----------------PVRLSDTAG 325 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc------eEeCCCCCcchhhheeEeecCCe----------------EEEEEeccc
Confidence 36699999999999999999987766 46666655655544433333222 399999999
Q ss_pred Ccc-hH--------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh------------CCCCEEEEEecccccCcc
Q psy6316 104 HES-FS--------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS------------KKTPFVVALNKIDRLYNW 162 (259)
Q Consensus 104 ~~~-~~--------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~------------~~~piivv~NK~D~~~~~ 162 (259)
..+ -. ......+..+|++++|+|+......++......+.. ...|++++.||.|+....
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~ 405 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI 405 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc
Confidence 443 11 112345678999999999976666666555544433 126889999999998532
Q ss_pred cccchhhHHHHHhhhhcccccccc-ccccccCcceeEEeecCCC
Q psy6316 163 NTMNRRDVRDIIKSQESSVQTHKT-VESARKGQEICIKIEPIPG 205 (259)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~i-~~Sa~~g~gv~~~l~~i~~ 205 (259)
.......+ ..... .....+++. .+||++++|+..+...+.+
T Consensus 406 ~~~~~~~~-~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 406 PEMTKIPV-VYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred ccccCCce-ecccc-ccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 21111111 11111 111134555 4999999999987665544
No 267
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.60 E-value=5.5e-15 Score=113.39 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=65.4
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+.|+++|++|+|||+|...|..........+ +....+... . .-....+.++|+||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS-~e~n~~~~~-------------~----------~~~~~~~~lvD~PG 58 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS-MENNIAYNV-------------N----------NSKGKKLRLVDIPG 58 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEECCG-------------S----------STCGTCECEEEETT
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc-ccCCceEEe-------------e----------cCCCCEEEEEECCC
Confidence 46799999999999999999988754322111 111111110 0 01111399999999
Q ss_pred CcchHHHHHhh---ccCCCeEEEEEeCCCCCCHHH---HHHH----HHHH--hCCCCEEEEEecccccCc
Q psy6316 104 HESFSNLRNRG---SSLCDIAILVVDIMHGLEPQT---IESI----NILK--SKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 104 ~~~~~~~~~~~---~~~ad~~i~v~d~~~~~~~~~---~~~l----~~~~--~~~~piivv~NK~D~~~~ 161 (259)
|.+.+...... ...+.++|||+|++.. ...- .+++ .... ....|++++.||.|+..+
T Consensus 59 H~rlr~~~~~~~~~~~~~k~IIfvvDSs~~-~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 59 HPRLRSKLLDELKYLSNAKGIIFVVDSSTD-QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp -HCCCHHHHHHHHHHGGEEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred cHHHHHHHHHhhhchhhCCEEEEEEeCccc-hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99887765554 7889999999998641 1111 1222 1111 246899999999999854
No 268
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.59 E-value=1.1e-14 Score=115.05 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=73.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+|||||+|.|++.+......... + .+........ .....++.++||||..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~----~-~T~~~~~~~~----------------~~~~~~i~viDTPG~~ 60 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSAS----S-VTKTCQKESA----------------VWDGRRVNVIDTPGLF 60 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCC----C-cccccceeeE----------------EECCeEEEEEECcCCC
Confidence 59999999999999999999886532111000 1 1111111100 0111239999999944
Q ss_pred ch-------HHHH----HhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC-C----CCEEEEEecccccC
Q psy6316 106 SF-------SNLR----NRGSSLCDIAILVVDIMHGLEPQTIESINILKSK-K----TPFVVALNKIDRLY 160 (259)
Q Consensus 106 ~~-------~~~~----~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~-~----~piivv~NK~D~~~ 160 (259)
+. .... ......+|++++|+++.. ++..+...+..+++. + .++++++|++|...
T Consensus 61 d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 61 DTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred CccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 32 1111 123467899999999977 777788887777663 2 67899999999874
No 269
>PTZ00099 rab6; Provisional
Probab=99.59 E-value=1.6e-15 Score=117.48 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=78.3
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHH
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
+.||||||++.+..++..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....++.
T Consensus 31 l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~-~v~~~e~- 108 (176)
T PTZ00099 31 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR-KVTYEEG- 108 (176)
T ss_pred EEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc-CCCHHHH-
Confidence 99999999999999999999999999999999886555443 35444433 357889999999986321 1122222
Q ss_pred HHHhhhhccccccccccccccCcceeEEeecCCCCC
Q psy6316 172 DIIKSQESSVQTHKTVESARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 172 ~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~ 207 (259)
.......++.++++||++|.|+.+++..+....
T Consensus 109 ---~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 109 ---MQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred ---HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 223334456778999999999999887775443
No 270
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.58 E-value=2.8e-14 Score=114.90 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=92.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
..+..|+++|.+|+|||||++.|.+..-.. ......+..+. .. ....+++++||
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----~~~~~~g~i~i-----------~~-----------~~~~~i~~vDt 90 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----NISDIKGPITV-----------VT-----------GKKRRLTFIEC 90 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----ccccccccEEE-----------Ee-----------cCCceEEEEeC
Confidence 335569999999999999999997642110 01111110000 00 01113999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEecccccCcccccchhhHHHHHhh-hhc
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRLYNWNTMNRRDVRDIIKS-QES 179 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~~~~~~~~~~~~~~~~~~-~~~ 179 (259)
||+. ......++.+|++++|+|++.+...++..++..+...+.|.+ +|+||+|+..... ..+.....++. +..
T Consensus 91 Pg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~--~~~~~~~~l~~~~~~ 165 (225)
T cd01882 91 PNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK--TLRKTKKRLKHRFWT 165 (225)
T ss_pred CchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHH--HHHHHHHHHHHHHHH
Confidence 9853 334456789999999999998888888888888888888854 5999999874211 12233333333 221
Q ss_pred -c-ccccccccccccCcce
Q psy6316 180 -S-VQTHKTVESARKGQEI 196 (259)
Q Consensus 180 -~-~~~~~i~~Sa~~g~gv 196 (259)
. ...+++++||++...+
T Consensus 166 ~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 166 EVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred hhCCCCcEEEEeeccCCCC
Confidence 1 1357778999876433
No 271
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.58 E-value=1.5e-15 Score=128.49 Aligned_cols=195 Identities=15% Similarity=0.169 Sum_probs=96.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+.+|||+|.+|+|||||||+|.|-.-.... .+. +..+++++....+.. ....++++||.||
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~-aA~-------tGv~etT~~~~~Y~~-----------p~~pnv~lWDlPG 95 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEG-AAP-------TGVVETTMEPTPYPH-----------PKFPNVTLWDLPG 95 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTT-S---------SSSHSCCTS-EEEE------------SS-TTEEEEEE--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcC-cCC-------CCCCcCCCCCeeCCC-----------CCCCCCeEEeCCC
Confidence 357999999999999999999764332111 111 111122222222211 1112499999999
Q ss_pred Ccc--hHH---HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc-Cc-----ccccchhhHHH
Q psy6316 104 HES--FSN---LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL-YN-----WNTMNRRDVRD 172 (259)
Q Consensus 104 ~~~--~~~---~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~-~~-----~~~~~~~~~~~ 172 (259)
... +.. .-...+...|.+|++.+ ..++..+..+...++..++|+++|-+|+|.- .. .....++++.+
T Consensus 96 ~gt~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~ 173 (376)
T PF05049_consen 96 IGTPNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQ 173 (376)
T ss_dssp GGGSS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHH
T ss_pred CCCCCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHH
Confidence 432 211 11224578998887766 5567888999999999999999999999962 11 11223334444
Q ss_pred HHhhh----hccc---cccccccccccCcc--eeEEeecCCCCCCcccccCC-cchhhHHHHhhhhhHHHHHHHHHh
Q psy6316 173 IIKSQ----ESSV---QTHKTVESARKGQE--ICIKIEPIPGEAPKMFGRHF-DENDFLVSKISRQSIDACKDYFRD 239 (259)
Q Consensus 173 ~~~~~----~~~~---~~~~i~~Sa~~g~g--v~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~~~~ 239 (259)
.+++. .... ..++|.+|+..-.. ...+...+..+.+......+ ...+.+..+++.++.+++++.+..
T Consensus 174 ~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~ 250 (376)
T PF05049_consen 174 EIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWL 250 (376)
T ss_dssp HHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Confidence 43332 2221 23556788875433 33333333333333222111 233445566777788788774443
No 272
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=8.7e-15 Score=123.29 Aligned_cols=70 Identities=33% Similarity=0.517 Sum_probs=64.9
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
|....++|.|||||++|.....+.+-.+|.+|+|+|+..++.++++.++.-++..++|++=.+||+|...
T Consensus 78 Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 78 YADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred cCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence 3333499999999999999999999999999999999999999999999999999999999999999874
No 273
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.57 E-value=7.4e-15 Score=120.49 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=96.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.||||||||++.++..+.. ..++.+||..+.--. +... ....|++-|.||.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPK-------IadYpFTTL~PnLGv-----V~~~----------~~~sfv~ADIPGL 217 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPK-------IADYPFTTLVPNLGV-----VRVD----------GGESFVVADIPGL 217 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCc-------ccCCccccccCcccE-----EEec----------CCCcEEEecCccc
Confidence 35899999999999999999877653 223333333322111 1100 0113999999992
Q ss_pred c-------chHHHHHhhccCCCeEEEEEeCCCCCC---HHHHH-HHHHHHh-----CCCCEEEEEecccccCcccccchh
Q psy6316 105 E-------SFSNLRNRGSSLCDIAILVVDIMHGLE---PQTIE-SINILKS-----KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 105 ~-------~~~~~~~~~~~~ad~~i~v~d~~~~~~---~~~~~-~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
. -........+..+.++++|+|++.... .++.. +...+.. .++|.++|+||+|+..+ .+
T Consensus 218 IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-----~e 292 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-----EE 292 (369)
T ss_pred ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-----HH
Confidence 2 244556678889999999999975432 22222 3344444 36899999999996642 23
Q ss_pred hHHHHHhhhhccccccccc-cccccCcceeEEeecC
Q psy6316 169 DVRDIIKSQESSVQTHKTV-ESARKGQEICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~-~Sa~~g~gv~~~l~~i 203 (259)
+.....+.+.....+.... +||.++.|++.++..+
T Consensus 293 ~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 293 ELEELKKALAEALGWEVFYLISALTREGLDELLRAL 328 (369)
T ss_pred HHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHH
Confidence 3444444444444555444 9999999998865444
No 274
>KOG0072|consensus
Probab=99.56 E-value=3.3e-15 Score=107.27 Aligned_cols=152 Identities=24% Similarity=0.240 Sum_probs=100.3
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
.+|| |.++|..|+||+|++.++--.+... +.++ ...+...+ .+++-++.+|
T Consensus 17 ~e~r---ililgldGaGkttIlyrlqvgevvt-------------tkPt--igfnve~v-----------~yKNLk~~vw 67 (182)
T KOG0072|consen 17 REMR---ILILGLDGAGKTTILYRLQVGEVVT-------------TKPT--IGFNVETV-----------PYKNLKFQVW 67 (182)
T ss_pred cceE---EEEeeccCCCeeEEEEEcccCcccc-------------cCCC--CCcCcccc-----------ccccccceee
Confidence 5778 9999999999999998884333321 1111 01111111 1233349999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCC--CCHHHHHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHG--LEPQTIESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~--~~~~~~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
|..|+......|..++.+.|.+|||+|.++. .+....++...+.+ .+..+++++||.|....- ...+....+
T Consensus 68 dLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L 144 (182)
T KOG0072|consen 68 DLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLKML 144 (182)
T ss_pred EccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh---hHHHHHHHh
Confidence 9999999999999999999999999998763 33333444444443 456788999999986421 223333322
Q ss_pred hhh-hccccccccccccccCcceeEEeecC
Q psy6316 175 KSQ-ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~-~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
... .+...+.++.+||.+|+|++...+.+
T Consensus 145 ~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL 174 (182)
T KOG0072|consen 145 GLQKLKDRIWQIVKTSAVKGEGLDPAMDWL 174 (182)
T ss_pred ChHHHhhheeEEEeeccccccCCcHHHHHH
Confidence 211 12224788899999999998855443
No 275
>KOG0074|consensus
Probab=99.56 E-value=1.3e-14 Score=103.97 Aligned_cols=153 Identities=17% Similarity=0.098 Sum_probs=101.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|-.|||||||+..|.+.... -+..+.|+++...+... .+ ++++||..|
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~~g-----------------~f---~LnvwDiGG 71 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEYDG-----------------TF---HLNVWDIGG 71 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEeecC-----------------cE---EEEEEecCC
Confidence 344999999999999999999766542 24444444444332211 11 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH--HH---HHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT--IE---SINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ- 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~--~~---~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~- 177 (259)
+...+..|..|+...|++|||+|+++.-...+ .+ ++...+-..+|+.+..||.|++... ..+++...+...
T Consensus 72 qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa---~~eeia~klnl~~ 148 (185)
T KOG0074|consen 72 QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA---KVEEIALKLNLAG 148 (185)
T ss_pred ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---chHHHHHhcchhh
Confidence 99999999999999999999999876533332 11 2222233568999999999998432 222222222111
Q ss_pred hccccccccccccccCcceeEEeecCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.....|.+-.+||.+++|+..-...+.
T Consensus 149 lrdRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 149 LRDRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred hhhceEEeeeCccccccCccCcchhhh
Confidence 122257777899999999877544443
No 276
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.52 E-value=2.2e-14 Score=116.90 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=59.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.|++|||||++.|.+.+. -..++.+++..+-..+. +|+.-+++++|+||.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s-------eva~y~FTTl~~VPG~l----------------~Y~ga~IQild~Pgi 120 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS-------EVADYPFTTLEPVPGML----------------EYKGAQIQLLDLPGI 120 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc-------cccccCceecccccceE----------------eecCceEEEEcCccc
Confidence 5699999999999999999988765 34445555554322221 233334999999992
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCCC
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHGL 131 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~~ 131 (259)
.. -.+...+.++.||++++|+|+....
T Consensus 121 i~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 121 IEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 21 2244566789999999999997543
No 277
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=8.6e-14 Score=129.06 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=75.8
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
.+++|||||+.+|...+..++..+|++++|+|++.+...+....+..+...++|+++++||+|+... ...+..+.+
T Consensus 61 ~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~----~~~~~~~~l 136 (668)
T PRK12740 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA----DFFRVLAQL 136 (668)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC----CHHHHHHHH
Confidence 4999999999998888889999999999999999988888888888888889999999999998742 223344444
Q ss_pred hhhhccccccccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+..... ......+....|.++..++..+
T Consensus 137 ~~~l~~-~~~~~~~p~~~~~~~~~~id~~ 164 (668)
T PRK12740 137 QEKLGA-PVVPLQLPIGEGDDFTGVVDLL 164 (668)
T ss_pred HHHHCC-CceeEEecccCCCCceEEEECc
Confidence 433221 1111234445666666655433
No 278
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.51 E-value=4.6e-13 Score=115.82 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=54.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCC--CcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEA--GGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+++|.||+|||||+|+|++..+..... .++....|....+..-............ ...++.......+.+|||||
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~-~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPR-NGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccc-cccccCCcceeeEEEEEcCC
Confidence 59999999999999999999877643211 1222222322211100000000000000 00000011112389999999
Q ss_pred Cc----c---hHHHHHhhccCCCeEEEEEeCC
Q psy6316 104 HE----S---FSNLRNRGSSLCDIAILVVDIM 128 (259)
Q Consensus 104 ~~----~---~~~~~~~~~~~ad~~i~v~d~~ 128 (259)
.. . ........++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 32 1 3334445589999999999996
No 279
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.50 E-value=8.8e-14 Score=116.86 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=52.8
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCC--CcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEA--GGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
|+++|.+|+|||||+|+|++........ .++....+.......-............ ...+.......++.+|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPR-YGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhccc-ccccccCcCcceEEEEECCCC
Confidence 6899999999999999999876532111 1122222222111000000000000000 000000111124999999995
Q ss_pred ----cchH---HHHHhhccCCCeEEEEEeCCC
Q psy6316 105 ----ESFS---NLRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 105 ----~~~~---~~~~~~~~~ad~~i~v~d~~~ 129 (259)
..+. ......++.||++++|+|+..
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 2222 234446899999999999963
No 280
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.50 E-value=2.1e-14 Score=119.18 Aligned_cols=66 Identities=30% Similarity=0.439 Sum_probs=61.2
Q ss_pred eEEEeCCCCcchHHHHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 96 LLIIDTPGHESFSNLRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
+.|+||.||+.|.......+ ++.|-.++++-++++.+...++++..+.....|++++++|+|+..+
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d 270 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPD 270 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcH
Confidence 89999999999988877765 7899999999999999999999999999999999999999999854
No 281
>KOG1707|consensus
Probab=99.48 E-value=3e-13 Score=117.76 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=106.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++...|+++|..|+|||||+-+|+...+... ++.-....+.+.+.+.+.. ..+++||
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadvtPe~v-------------------pt~ivD~ 63 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADVTPENV-------------------PTSIVDT 63 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCccCcCcC-------------------ceEEEec
Confidence 3344599999999999999999998877543 2222233334433332221 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHH--HHHHHHHHHhC-----CCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQ--TIESINILKSK-----KTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~--~~~~l~~~~~~-----~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
+...+-......-+++||++.+++++++..+.. ...|+-.++.. ++|+|+|+||+|....+.......+.-.+
T Consensus 64 ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim 143 (625)
T KOG1707|consen 64 SSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIM 143 (625)
T ss_pred ccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHH
Confidence 987766666678899999999999988754433 34466666653 58999999999998654331111233333
Q ss_pred hhhhccccccccccccccCcceeEEeecCCC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.++... -.+|.+||++-.++.+++-...+
T Consensus 144 ~~f~Ei--EtciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 144 IAFAEI--ETCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred HHhHHH--HHHHhhhhhhhhhhHhhhhhhhh
Confidence 333321 35788999999999986644433
No 282
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.46 E-value=3.7e-13 Score=107.75 Aligned_cols=146 Identities=19% Similarity=0.200 Sum_probs=77.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|+.++||||+.+.+...... .+...++. | ..++...... ..+-.+.+||+||+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~----T-~~ve~~~v~~---------------~~~~~l~iwD~pGq~ 59 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEP----T-IDVEKSHVRF---------------LSFLPLNIWDCPGQD 59 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG----------SEEEEEEEC---------------TTSCEEEEEEE-SSC
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCC----c-CCceEEEEec---------------CCCcEEEEEEcCCcc
Confidence 4999999999999999988755321 11111221 1 1111111110 001129999999987
Q ss_pred chHHH-----HHhhccCCCeEEEEEeCCCCCCHHHHHH----HHHHHh--CCCCEEEEEecccccCcc-cccchhhHHHH
Q psy6316 106 SFSNL-----RNRGSSLCDIAILVVDIMHGLEPQTIES----INILKS--KKTPFVVALNKIDRLYNW-NTMNRRDVRDI 173 (259)
Q Consensus 106 ~~~~~-----~~~~~~~ad~~i~v~d~~~~~~~~~~~~----l~~~~~--~~~piivv~NK~D~~~~~-~~~~~~~~~~~ 173 (259)
.+... ....++.++++|||+|+.+.....+... +..+.+ .+..+.++++|+|+...+ .....++..+.
T Consensus 60 ~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~ 139 (232)
T PF04670_consen 60 DFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQR 139 (232)
T ss_dssp STTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHH
Confidence 65443 3456789999999999985444444433 333333 357788999999998532 11122223333
Q ss_pred Hhhhhcccc---cccccccccc
Q psy6316 174 IKSQESSVQ---THKTVESARK 192 (259)
Q Consensus 174 ~~~~~~~~~---~~~i~~Sa~~ 192 (259)
+.+.....+ +.++.+|...
T Consensus 140 i~~~~~~~~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 140 IRDELEDLGIEDITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHTT-TSEEEEEE-TTS
T ss_pred HHHHhhhccccceEEEeccCcC
Confidence 333333333 4555566655
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.46 E-value=7.9e-14 Score=117.29 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=77.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
+++|+||+|...-.. .....+|.+++|+++..+. +...... .......++|+||+|+.... ..+.....+
T Consensus 150 d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd---~iq~~k~-gi~E~aDIiVVNKaDl~~~~---~a~~~~~el 219 (332)
T PRK09435 150 DVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGD---ELQGIKK-GIMELADLIVINKADGDNKT---AARRAAAEY 219 (332)
T ss_pred CEEEEECCCCccchh---HHHHhCCEEEEEecCCchH---HHHHHHh-hhhhhhheEEeehhcccchh---HHHHHHHHH
Confidence 499999999653222 2456799999998744332 2222111 01122348999999987432 112222223
Q ss_pred hhhhc-------cccccccccccccCcceeEEeecCCCCCCcccccCC------cchhhHHHHhhhhhH
Q psy6316 175 KSQES-------SVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHF------DENDFLVSKISRQSI 230 (259)
Q Consensus 175 ~~~~~-------~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~------~~~~~~~~~~~~e~~ 230 (259)
..... .|..+++.+||++|.|+++++..+....+.++++.. ...++++.+++++.+
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~~r~~~~~~~v~elire~l 288 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAARRREQQVDWMWEMVEEGL 288 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 133467889999999999988888766666665554 244667777777766
No 284
>PRK13768 GTPase; Provisional
Probab=99.46 E-value=5.5e-14 Score=115.05 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=66.8
Q ss_pred CeEEEeCCCCcchH---HHH---HhhccC--CCeEEEEEeCCCCCCHHHHHHHHHHH-----hCCCCEEEEEecccccCc
Q psy6316 95 GLLIIDTPGHESFS---NLR---NRGSSL--CDIAILVVDIMHGLEPQTIESINILK-----SKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 95 ~~~liDtpG~~~~~---~~~---~~~~~~--ad~~i~v~d~~~~~~~~~~~~l~~~~-----~~~~piivv~NK~D~~~~ 161 (259)
++.+|||||+.+.. ..+ ...+.. ++++++|+|++...+..+......+. ..++|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 59999999965532 222 222333 89999999998766666654433332 568999999999999853
Q ss_pred ccccchhhHHHHHhh------------------------hhccc--cccccccccccCcceeEEeecC
Q psy6316 162 WNTMNRRDVRDIIKS------------------------QESSV--QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 162 ~~~~~~~~~~~~~~~------------------------~~~~~--~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.. .+.....+.. ..... ..+++++||++++|+++++..+
T Consensus 178 ~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I 242 (253)
T PRK13768 178 EE---LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAI 242 (253)
T ss_pred hh---HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHH
Confidence 21 1222222221 11111 2467889999999998855544
No 285
>KOG1490|consensus
Probab=99.44 E-value=5e-13 Score=114.45 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=109.3
Q ss_pred hhhhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCC
Q psy6316 5 FNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGE 84 (259)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (259)
+...++.+...|..-+.+| .++++|-||+|||||+|.+...... ...+.+++...--
T Consensus 151 LeqVrqhl~rlPsIDp~tr--TlllcG~PNVGKSSf~~~vtradve-------vqpYaFTTksL~v-------------- 207 (620)
T KOG1490|consen 151 LEQVRQHLSRLPAIDPNTR--TLLVCGYPNVGKSSFNNKVTRADDE-------VQPYAFTTKLLLV-------------- 207 (620)
T ss_pred HHHHHHHHhcCCCCCCCcC--eEEEecCCCCCcHhhcccccccccc-------cCCcccccchhhh--------------
Confidence 3456777778887777766 6999999999999999999777653 2233333332211
Q ss_pred CCCCCCCCCCCeEEEeCCCCcc-----hH--HH-H-HhhccCCCeEEEEEeCCCCCCHH---HHHHHHHHHh--CCCCEE
Q psy6316 85 VGGPGPLEIPGLLIIDTPGHES-----FS--NL-R-NRGSSLCDIAILVVDIMHGLEPQ---TIESINILKS--KKTPFV 150 (259)
Q Consensus 85 ~~~~~~~~~~~~~liDtpG~~~-----~~--~~-~-~~~~~~ad~~i~v~d~~~~~~~~---~~~~l~~~~~--~~~pii 150 (259)
++..|..-.|+++||||..+ .+ .+ . ....+.-.+|+|++|.+...... ...++..++. .++|.|
T Consensus 208 --GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~I 285 (620)
T KOG1490|consen 208 --GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTI 285 (620)
T ss_pred --hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceE
Confidence 12244444699999999322 11 11 1 12335667899999998654432 2344555555 489999
Q ss_pred EEEecccccCcccccchhhHHHHHhhhhccccccccccccccCcceeE
Q psy6316 151 VALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 151 vv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
+|+||+|....+.-. ++-.+.++......+++++.+|+.+-+|+-.
T Consensus 286 lvlNK~D~m~~edL~--~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 286 LVLNKIDAMRPEDLD--QKNQELLQTIIDDGNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred EEeecccccCccccC--HHHHHHHHHHHhccCceEEEecccchhceee
Confidence 999999998754322 2233445555555568889999999999865
No 286
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.43 E-value=8.7e-13 Score=101.46 Aligned_cols=64 Identities=27% Similarity=0.426 Sum_probs=48.3
Q ss_pred CCCeEEEeCCCCcc----hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh-CCCCEEEEEecc
Q psy6316 93 IPGLLIIDTPGHES----FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS-KKTPFVVALNKI 156 (259)
Q Consensus 93 ~~~~~liDtpG~~~----~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~-~~~piivv~NK~ 156 (259)
..++.|+||||... ....+..+++.+|++|+|++++......+...+..... ....+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 34599999999432 33667778899999999999998777777776665554 456689999985
No 287
>KOG0077|consensus
Probab=99.43 E-value=1.2e-12 Score=96.57 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=79.2
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
|..+++++|-.|||||||+++|-.....+. . .+..+....-...++ .++-+|..
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-----v-----PTlHPTSE~l~Ig~m----------------~ftt~DLG 72 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-----V-----PTLHPTSEELSIGGM----------------TFTTFDLG 72 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-----C-----CCcCCChHHheecCc----------------eEEEEccc
Confidence 356799999999999999999965543211 1 111111111111222 29999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHH---HH-hCCCCEEEEEecccccCcc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINI---LK-SKKTPFVVALNKIDRLYNW 162 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~---~~-~~~~piivv~NK~D~~~~~ 162 (259)
||..-...|..++..+|++++++|+.+....++ +..+.. .. -.+.|+++..||+|.....
T Consensus 73 GH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 73 GHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred cHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 999999999999999999999999987544333 222222 22 3579999999999998654
No 288
>KOG0468|consensus
Probab=99.43 E-value=8.3e-13 Score=116.31 Aligned_cols=137 Identities=27% Similarity=0.306 Sum_probs=90.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCC-CCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGE-VGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~liDtp 102 (259)
..+|+++|+-.+|||+|+..|....-...+. .......+++..+.. .++...+...... +.....-+-.-++++|||
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~-~~e~~lrytD~l~~E-~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSK-NTEADLRYTDTLFYE-QERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccc-cccccccccccchhh-HhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4589999999999999999996553211100 001111111111110 0111111100000 000000111128999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNW 162 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~ 162 (259)
||-.|.......++.+|++++|+|+.++.+....+.+++....+.|+++|+||+|++..+
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilE 265 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILE 265 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987543
No 289
>KOG1532|consensus
Probab=99.42 E-value=9.4e-14 Score=110.61 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=71.8
Q ss_pred CeEEEeCCCCcc-hHHH-----HHhhc--cCCCeEEEEEeCCCCCCHHH-----HHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 95 GLLIIDTPGHES-FSNL-----RNRGS--SLCDIAILVVDIMHGLEPQT-----IESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 95 ~~~liDtpG~~~-~~~~-----~~~~~--~~ad~~i~v~d~~~~~~~~~-----~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
++.++|||||.+ |.+. ....+ ...-+++||+|......+.. +.-...+.+...|.|+++||+|..++
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~ 196 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDS 196 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccccc
Confidence 399999999654 3322 22222 35678899999765444332 22345667788999999999999865
Q ss_pred ccccc----hhhHHHHHhhhhcc-----------------ccccccccccccCcceeEEeecCCCCCCcc
Q psy6316 162 WNTMN----RRDVRDIIKSQESS-----------------VQTHKTVESARKGQEICIKIEPIPGEAPKM 210 (259)
Q Consensus 162 ~~~~~----~~~~~~~~~~~~~~-----------------~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~ 210 (259)
+...+ .+...+.++..... .+.+.+.+|+.+|+|+++.+..+......+
T Consensus 197 ~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 197 EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 32222 22222222221000 056788899999999999877665544443
No 290
>KOG3883|consensus
Probab=99.42 E-value=1.9e-12 Score=94.16 Aligned_cols=151 Identities=25% Similarity=0.187 Sum_probs=98.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCC--CcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEA--GGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
..+|+++|.-++|||+++..|+..+-..+.. +++...+-..-......++ .+.|.||
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE---------------------~l~lyDT 67 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGARE---------------------QLRLYDT 67 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhh---------------------eEEEeec
Confidence 3459999999999999999997665433221 2222222111111111111 2999999
Q ss_pred CCCcch-HHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh-----CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 102 PGHESF-SNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS-----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 102 pG~~~~-~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
.|...+ ..+-..+++-+|++++|++..+..+.+-.+.++.... ..+|+++++||+|+.. ..+......+
T Consensus 68 aGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-----p~~vd~d~A~ 142 (198)
T KOG3883|consen 68 AGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-----PREVDMDVAQ 142 (198)
T ss_pred ccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-----chhcCHHHHH
Confidence 996555 5666678899999999999988777776666655433 3479999999999863 2233334445
Q ss_pred hhhccccccccccccccCcceeEEe
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
.+...-.+.-+.++|.....+-+.+
T Consensus 143 ~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 143 IWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred HHHhhhheeEEEEEeccchhhhhHH
Confidence 5555445666677777665554433
No 291
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.41 E-value=7.8e-12 Score=100.77 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=52.3
Q ss_pred CeEEEeCCCCcc-------------hHHHHHhhcc-CCCeEEEEEeCCCCCCHHH-HHHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHES-------------FSNLRNRGSS-LCDIAILVVDIMHGLEPQT-IESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~-------------~~~~~~~~~~-~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++|+||||... ...+...+++ ..+++++|+|++.++..++ .++.+.+...+.|+++|+||+|..
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 599999999531 2233445666 5679999999988777766 688888888999999999999997
Q ss_pred C
Q psy6316 160 Y 160 (259)
Q Consensus 160 ~ 160 (259)
.
T Consensus 206 ~ 206 (240)
T smart00053 206 D 206 (240)
T ss_pred C
Confidence 4
No 292
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.40 E-value=3.8e-12 Score=107.93 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=87.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCC----C-----cceeec-c---ccccCccccccccccccCCCCCCCCCCCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEA----G-----GITQQI-G---ATNVPADAIRENTKHVRGPGGEVGGPGPLE 92 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~----~-----~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (259)
.|+++|+.++|||||+|++.+.-+.++-. . .++... | .|+.+. ........+...+ -.
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePk-fvP~kAvEI~~~~--------~~ 89 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPK-FVPNEAVEININE--------GT 89 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCc-cccCcceEEeccC--------CC
Confidence 49999999999999999999883222111 0 022222 2 222222 2111111111111 11
Q ss_pred CCCeEEEeCCCCcc--------hHH-----------------H----HHhhcc-CCCeEEEEE-eCC------CCCCHHH
Q psy6316 93 IPGLLIIDTPGHES--------FSN-----------------L----RNRGSS-LCDIAILVV-DIM------HGLEPQT 135 (259)
Q Consensus 93 ~~~~~liDtpG~~~--------~~~-----------------~----~~~~~~-~ad~~i~v~-d~~------~~~~~~~ 135 (259)
..++.++||+|... -.. . ....++ .+|+.|+|. |.+ +.....+
T Consensus 90 ~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 90 KFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred cccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH
Confidence 12399999999321 111 0 223445 899999999 765 3455667
Q ss_pred HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccc
Q psy6316 136 IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESAR 191 (259)
Q Consensus 136 ~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 191 (259)
.+++..+++.++|+++++||+|-... +.......+...++.+++++||.
T Consensus 170 e~~i~eLk~~~kPfiivlN~~dp~~~-------et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 170 ERVIEELKELNKPFIILLNSTHPYHP-------ETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHHHHHhcCCCEEEEEECcCCCCc-------hhHHHHHHHHHHhCCceEEEEHH
Confidence 88999999999999999999994321 12222223334445666777774
No 293
>KOG0463|consensus
Probab=99.40 E-value=9.6e-13 Score=109.23 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=108.8
Q ss_pred eEEEeCCCCcchHHHHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 96 LLIIDTPGHESFSNLRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
++|||.+||+.|.+.....+ +..|...+++.++.++....++++......++|+++|++|+|+... ...++..+.
T Consensus 221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA---NiLqEtmKl 297 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA---NILQETMKL 297 (641)
T ss_pred EEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH---HHHHHHHHH
Confidence 89999999999988766655 5789999999999998888999999999999999999999999732 244556666
Q ss_pred HhhhhccccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCc----hhhHHH
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQK----TDWQLM 249 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~----~~~~~~ 249 (259)
+.++.+.-+++.+++-.++...+...-.....+..+ .-|.++.+..+.++.|+.++....-. -..|.-
T Consensus 298 l~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~C--------PIFQvSNVtG~NL~LLkmFLNlls~R~~~~E~~PAe 369 (641)
T KOG0463|consen 298 LTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVC--------PIFQVSNVTGTNLPLLKMFLNLLSLRRQLNENDPAE 369 (641)
T ss_pred HHHHhcCCCcccCcEEEecccceEEeeccCcccccc--------ceEEeccccCCChHHHHHHHhhcCcccccccCCCcc
Confidence 777777777888877776666554433333333322 34556777777888887755432211 123455
Q ss_pred HHHHHhhcc
Q psy6316 250 VDLKKVFQI 258 (259)
Q Consensus 250 ~~i~~~~~~ 258 (259)
+.|+|+|.+
T Consensus 370 FQIDD~Y~V 378 (641)
T KOG0463|consen 370 FQIDDIYWV 378 (641)
T ss_pred eeecceEec
Confidence 777887764
No 294
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.40 E-value=1.5e-13 Score=96.53 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC--
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG-- 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG-- 103 (259)
+++++|..|+|||||.++|.|........-.+. + .+=-.+||||
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve--------------------------------~--~d~~~IDTPGEy 48 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVE--------------------------------F--NDKGDIDTPGEY 48 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceee--------------------------------c--cCccccCCchhh
Confidence 599999999999999999977654211100000 0 0123689999
Q ss_pred --CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc-c
Q psy6316 104 --HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES-S 180 (259)
Q Consensus 104 --~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~ 180 (259)
|..+.+.+....+.+|++++|-.++++.+.-.-. ++....+|+|-+++|+|+..+ .++ ...+++.. .
T Consensus 49 ~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~---f~~~~~k~vIgvVTK~DLaed------~dI-~~~~~~L~ea 118 (148)
T COG4917 49 FEHPRWYHALITTLQDADVIIYVHAANDPESRFPPG---FLDIGVKKVIGVVTKADLAED------ADI-SLVKRWLREA 118 (148)
T ss_pred hhhhHHHHHHHHHhhccceeeeeecccCccccCCcc---cccccccceEEEEecccccch------HhH-HHHHHHHHHc
Confidence 5556666667779999999999998764432221 223345779999999999832 222 22333322 2
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
..-++|.+|+.+..|+++++..+.
T Consensus 119 Ga~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 119 GAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred CCcceEEEeccCcccHHHHHHHHH
Confidence 235777899999999988665543
No 295
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.40 E-value=4.4e-12 Score=103.25 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=70.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+.+|+++|.+|+|||||+|+|++....... .....+........ ......++||||||
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~------~~~~~T~~~~~~~~----------------~~~g~~i~vIDTPG 88 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATS------AFQSETLRVREVSG----------------TVDGFKLNIIDTPG 88 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccC------CCCCceEEEEEEEE----------------EECCeEEEEEECCC
Confidence 355999999999999999999987643211 01001111100000 00111399999999
Q ss_pred CcchH--H-H-------HHhhc--cCCCeEEEEEeCCC-CCCHHHHHHHHHHHh-CC----CCEEEEEecccccCc
Q psy6316 104 HESFS--N-L-------RNRGS--SLCDIAILVVDIMH-GLEPQTIESINILKS-KK----TPFVVALNKIDRLYN 161 (259)
Q Consensus 104 ~~~~~--~-~-------~~~~~--~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~-~~----~piivv~NK~D~~~~ 161 (259)
..+.. . . ...++ ...|+++||...+. .....+...++.+.+ .+ .++++|+||+|...+
T Consensus 89 l~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 89 LLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 55431 0 0 11233 26789999976653 455666677777665 23 579999999998753
No 296
>KOG0448|consensus
Probab=99.40 E-value=1.9e-12 Score=114.55 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEeCCC---CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCccccc
Q psy6316 89 GPLEIPGLLIIDTPG---HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTM 165 (259)
Q Consensus 89 ~~~~~~~~~liDtpG---~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~ 165 (259)
+.+..++++++|.|| ......+....+..+|++|||+++.+..+..++.++....+....+.++.||+|...++.+
T Consensus 201 csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasase~e- 279 (749)
T KOG0448|consen 201 CSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASASEPE- 279 (749)
T ss_pred chhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhcccHH-
Confidence 456666899999999 3446666777889999999999999988888899988887773335566778998765322
Q ss_pred chhhHHHHHhhhhc----ccccccccccccc
Q psy6316 166 NRRDVRDIIKSQES----SVQTHKTVESARK 192 (259)
Q Consensus 166 ~~~~~~~~~~~~~~----~~~~~~i~~Sa~~ 192 (259)
..+.+...+.++.. .-.-.+++|||+.
T Consensus 280 c~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 280 CKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 33444444333321 1134677899764
No 297
>KOG0096|consensus
Probab=99.39 E-value=4e-13 Score=101.13 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=108.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+++++|..|.||||++++.+...++.++..+++...-.+...... +.+. |..|||.|++
T Consensus 12 klvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~-----g~ir----------------f~~wdtagqE 70 (216)
T KOG0096|consen 12 KLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNR-----GQIR----------------FNVWDTAGQE 70 (216)
T ss_pred EEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeeccc-----CcEE----------------EEeeecccce
Confidence 399999999999999999999999887777666554322222111 1122 9999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHH-HHH-H-hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-NIL-K-SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l-~~~-~-~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
.+......++-+..++++++|.++..+......| +-+ + ..++|+++++||.|.... ........+....+
T Consensus 71 k~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r-------~~k~k~v~~~rkkn 143 (216)
T KOG0096|consen 71 KKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKAR-------KVKAKPVSFHRKKN 143 (216)
T ss_pred eecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccc-------ccccccceeeeccc
Confidence 9999888888888999999999987776654433 222 2 245899999999997531 11222223334446
Q ss_pred ccccccccccCcceeEEeecC
Q psy6316 183 THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+..+.+||+++.+.+.-+.++
T Consensus 144 l~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 144 LQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred ceeEEeecccccccccchHHH
Confidence 788899999999998855544
No 298
>KOG0459|consensus
Probab=99.39 E-value=1.6e-13 Score=114.51 Aligned_cols=148 Identities=21% Similarity=0.310 Sum_probs=109.9
Q ss_pred CCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-------CHHHHHHHHHHHhCCC-CEEEEEecccccC-cc
Q psy6316 92 EIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-------EPQTIESINILKSKKT-PFVVALNKIDRLY-NW 162 (259)
Q Consensus 92 ~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~-piivv~NK~D~~~-~~ 162 (259)
..+++++.|+|||..|...+...+.+||+.++|+.+..+. ..+.+++....+..++ ..|+++||+|-.. .|
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 3445999999999999999999999999999999986532 2366777777777664 5788999999775 46
Q ss_pred cccchhhHHHHHhhhhccc------cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHH
Q psy6316 163 NTMNRRDVRDIIKSQESSV------QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDY 236 (259)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 236 (259)
+....++....+..+...+ ...++++|..+|.++.+... ...+|+++..+ +.-+++
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~---s~cpwy~gp~f--------------l~~ld~- 296 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD---SVCPWYKGPIF--------------LEYLDE- 296 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc---ccCCcccCCcc--------------ceehhc-
Confidence 6666666776666665533 23567899999999988554 45666655432 112333
Q ss_pred HHhhcCchhhHHHHHHHHhhc
Q psy6316 237 FRDDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~~~ 257 (259)
++...+..+.|++|+|-+-|+
T Consensus 297 l~~~~R~~~GP~~~pI~~Kyk 317 (501)
T KOG0459|consen 297 LPHLERILNGPIRCPVANKYK 317 (501)
T ss_pred cCcccccCCCCEEeehhhhcc
Confidence 677889999999999988775
No 299
>KOG0466|consensus
Probab=99.36 E-value=2e-13 Score=110.33 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=121.8
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccc---cCCCCCCcceeeccccccCccccccc------cccccCCCCCCCCCCC---
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTN---VQDGEAGGITQQIGATNVPADAIREN------TKHVRGPGGEVGGPGP--- 90 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--- 90 (259)
..-+|+-+|+..+||||++.++.+-. |...-.+.++...++.+.....-.+. .....+-..+..++++
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 35679999999999999999998764 44444455666666555443222110 0000111111112221
Q ss_pred -----CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-CCHHHHHHHHHHHhCC-CCEEEEEecccccCccc
Q psy6316 91 -----LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-LEPQTIESINILKSKK-TPFVVALNKIDRLYNWN 163 (259)
Q Consensus 91 -----~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-~~~~~~~~l~~~~~~~-~piivv~NK~D~~~~~~ 163 (259)
-..+++.|+|||||+-.-..+.......|++++++-++++ .++++.+++..+.... +.++++-||+|+...+.
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQ 196 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHH
Confidence 1223589999999987766666677788999999988754 5677888887777655 56788999999986432
Q ss_pred ccchhhHHHHHhhhhccccccccccccccCcceeEEeecCCCCCCccc
Q psy6316 164 TMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIPGEAPKMF 211 (259)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~ 211 (259)
..+..+..+.+-.-...-+.+++++||.-+++++.+.+++.+..|...
T Consensus 197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 222222222222222233678999999999999998888877766543
No 300
>KOG0465|consensus
Probab=99.34 E-value=1.1e-12 Score=114.54 Aligned_cols=130 Identities=28% Similarity=0.351 Sum_probs=96.1
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcccc-----CC-------------CCCCcceeeccccccCccccccccccccCCCCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNV-----QD-------------GEAGGITQQIGATNVPADAIRENTKHVRGPGGE 84 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (259)
+..+|+++-+-.+||||+.++++.-.- .+ ...++++.+.+++...
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~----------------- 100 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT----------------- 100 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee-----------------
Confidence 456899999999999999999863211 00 0011222222222221
Q ss_pred CCCCCCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccc
Q psy6316 85 VGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNT 164 (259)
Q Consensus 85 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~ 164 (259)
+....+++||||||.+|.-....+++..|++|+|+|+..+...+....++++++.++|.|-.+||+|..+....
T Consensus 101 ------w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 101 ------WRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPF 174 (721)
T ss_pred ------eccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChH
Confidence 22224999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred cchhhHHHHHh
Q psy6316 165 MNRRDVRDIIK 175 (259)
Q Consensus 165 ~~~~~~~~~~~ 175 (259)
...+.+...+.
T Consensus 175 ~~l~~i~~kl~ 185 (721)
T KOG0465|consen 175 RTLNQIRTKLN 185 (721)
T ss_pred HHHHHHHhhcC
Confidence 33444444443
No 301
>KOG1673|consensus
Probab=99.34 E-value=5.4e-13 Score=97.18 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=110.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+.+|.++|++..|||||+-...+....+.+..+. |.+... +...+.+.+.. +.+||..|
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~----GvN~md------kt~~i~~t~Is-----------fSIwdlgG 78 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTL----GVNFMD------KTVSIRGTDIS-----------FSIWDLGG 78 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHh----Ccccee------eEEEecceEEE-----------EEEEecCC
Confidence 4569999999999999999998877653322222 222211 11111111111 99999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhCCCC--EEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKSKKTP--FVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~~~p--iivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++++..+..-++.++-+++|++|.++..+... .+|.++.+..+.. -|+|++|.|..-.-..+-...+.....++++.
T Consensus 79 ~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~ 158 (205)
T KOG1673|consen 79 QREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKV 158 (205)
T ss_pred cHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766544 5678888876532 25789999976543333344555566667777
Q ss_pred ccccccccccccCcceeEEe
Q psy6316 181 VQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l 200 (259)
.+...+++|+...-++.+.+
T Consensus 159 mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 159 MNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred hCCcEEEeeccccccHHHHH
Confidence 78888999999998887744
No 302
>KOG2486|consensus
Probab=99.33 E-value=6.5e-12 Score=100.47 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=100.9
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+.+.+++.|.+|+|||||+|-++..+........ ....+ ..+.+. .-+..+.++|.|
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~----------K~g~T----q~in~f---------~v~~~~~~vDlP 191 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKS----------KNGKT----QAINHF---------HVGKSWYEVDLP 191 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCC----------CCccc----eeeeee---------eccceEEEEecC
Confidence 3577999999999999999999877653221110 01111 011100 011139999999
Q ss_pred C----------CcchHHHHHhhc---cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCccc---ccc
Q psy6316 103 G----------HESFSNLRNRGS---SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWN---TMN 166 (259)
Q Consensus 103 G----------~~~~~~~~~~~~---~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~---~~~ 166 (259)
| -.++......|+ +.-=.+.+++|++.++...+...+..+.+.++|+.+|+||||....-. ...
T Consensus 192 G~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp 271 (320)
T KOG2486|consen 192 GYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKP 271 (320)
T ss_pred CcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCc
Confidence 9 223555555555 233456778899999999999999999999999999999999875321 001
Q ss_pred hhhHHHHHhhhhc---cccccccccccccCcceeEEeecCC
Q psy6316 167 RRDVRDIIKSQES---SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 167 ~~~~~~~~~~~~~---~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+...++.+.. ....+++.+|+.++.|++.++-.+.
T Consensus 272 ~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 272 GLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred cccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence 1111111222211 1134567799999999999776553
No 303
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.31 E-value=2e-11 Score=101.05 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=68.8
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
...+|+++|.+|+||||++|+|++........ ....+......... .....+.+||||
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~------f~s~t~~~~~~~~~----------------~~G~~l~VIDTP 94 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSA------FQSEGLRPMMVSRT----------------RAGFTLNIIDTP 94 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC------CCCcceeEEEEEEE----------------ECCeEEEEEECC
Confidence 34569999999999999999999886532110 00000000000000 001139999999
Q ss_pred CCcchHHH---HHhhc------cCCCeEEEEEeCCC-CCCHHHHHHHHHHHhC-----CCCEEEEEecccccC
Q psy6316 103 GHESFSNL---RNRGS------SLCDIAILVVDIMH-GLEPQTIESINILKSK-----KTPFVVALNKIDRLY 160 (259)
Q Consensus 103 G~~~~~~~---~~~~~------~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~-----~~piivv~NK~D~~~ 160 (259)
|..+.... ....+ ...|+++||...+. ..+..+...++.+... -.++|+++|++|...
T Consensus 95 GL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 95 GLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 96543211 11111 26999999965542 3555566666666542 257899999999763
No 304
>KOG1954|consensus
Probab=99.31 E-value=2.3e-11 Score=100.84 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=84.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec-------cccccCccccc------cccccccCCCC-----
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI-------GATNVPADAIR------ENTKHVRGPGG----- 83 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~~~~----- 83 (259)
...|.|.++|..+.||||+++.|+...+..-..+..+.+. |.+......+. ..+.+...++.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 3468899999999999999999998876422211111000 00000000000 00000000000
Q ss_pred --CCCCCCCCCCCCeEEEeCCCCc-----------chHHHHHhhccCCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCE
Q psy6316 84 --EVGGPGPLEIPGLLIIDTPGHE-----------SFSNLRNRGSSLCDIAILVVDIMH-GLEPQTIESINILKSKKTPF 149 (259)
Q Consensus 84 --~~~~~~~~~~~~~~liDtpG~~-----------~~~~~~~~~~~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~pi 149 (259)
| +.-.+.-...++|+||||.- +|.....-++..+|.+++++|+.. .++....+.+.+++...-.+
T Consensus 136 f~c-sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 136 FMC-SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHH-hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 0 00001112249999999932 355556667789999999999975 46667788999999988899
Q ss_pred EEEEecccccC
Q psy6316 150 VVALNKIDRLY 160 (259)
Q Consensus 150 ivv~NK~D~~~ 160 (259)
-||+||+|.+.
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 99999999984
No 305
>KOG0464|consensus
Probab=99.31 E-value=1.1e-12 Score=110.17 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=98.8
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec-c-ccccCccccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI-G-ATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
+--+.++|+++.+.++||||...+++.-. ++....+.-. | ..+......+++...+. ..+...+++...++
T Consensus 33 ~~akirnigiiahidagktttterily~a---g~~~s~g~vddgdtvtdfla~erergitiq----saav~fdwkg~rin 105 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLA---GAIHSAGDVDDGDTVTDFLAIERERGITIQ----SAAVNFDWKGHRIN 105 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHh---hhhhcccccCCCchHHHHHHHHHhcCceee----eeeeecccccceEe
Confidence 33445689999999999999999985321 0000000000 0 00000001111111110 01122345555699
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++|||||.+|.-...+.++..|+++.|+|++.+...+....|++..+.++|-+..+||+|+.....+...+.+.+.+.
T Consensus 106 lidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 106 LIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred eecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999986543333444444443
No 306
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.31 E-value=1.9e-11 Score=97.59 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=67.3
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|.+|+||||++|.|++..........-+ .+........... ...+.++||||..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~-----~t~~~~~~~~~~~----------------g~~v~VIDTPGl~ 60 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKS-----VTQECQKYSGEVD----------------GRQVTVIDTPGLF 60 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS-------SS-EEEEEEET----------------TEEEEEEE--SSE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCC-----cccccceeeeeec----------------ceEEEEEeCCCCC
Confidence 599999999999999999998876332211111 1111111111111 1139999999932
Q ss_pred c-------hHHHHH----hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC-C----CCEEEEEecccccCc
Q psy6316 106 S-------FSNLRN----RGSSLCDIAILVVDIMHGLEPQTIESINILKSK-K----TPFVVALNKIDRLYN 161 (259)
Q Consensus 106 ~-------~~~~~~----~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~-~----~piivv~NK~D~~~~ 161 (259)
+ ...... ....+.|++|+|+... .++..+...+..+... + ..++||++.+|....
T Consensus 61 d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 61 DSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp ETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred CCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 2 111111 1245799999999987 7787787777766542 2 458999999998753
No 307
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.31 E-value=2.5e-12 Score=104.09 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=54.4
Q ss_pred CeEEEeCCCCcchHHHHHhhc--------cCCCeEEEEEeCCCCCCHHHHH-----HHHHHHhCCCCEEEEEecccccCc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGS--------SLCDIAILVVDIMHGLEPQTIE-----SINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~--------~~ad~~i~v~d~~~~~~~~~~~-----~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
.+.++|||||.++...+...- ...-++++++|+....++...- .+..+.+.+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 399999999887554444322 3456899999987554433321 123344578999999999999852
Q ss_pred ccccc-----------------hhhHHHHHhhhhcccc-c-cccccccccCcceeEEe
Q psy6316 162 WNTMN-----------------RRDVRDIIKSQESSVQ-T-HKTVESARKGQEICIKI 200 (259)
Q Consensus 162 ~~~~~-----------------~~~~~~~~~~~~~~~~-~-~~i~~Sa~~g~gv~~~l 200 (259)
..... .......+.+...... . +++++|+.+++|+..++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~ 229 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELL 229 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHH
Confidence 10000 1122222333333332 3 67789999999987644
No 308
>KOG0467|consensus
Probab=99.30 E-value=9.5e-12 Score=111.25 Aligned_cols=125 Identities=28% Similarity=0.361 Sum_probs=87.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccccc-----CccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNV-----PADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
..+|+++.+.++|||||+..|+..+- .+....+..-. +-+.++........+- .-+..+ .+++
T Consensus 9 irn~~~vahvdhgktsladsl~asng------vis~rlagkirfld~redeq~rgitmkss~is---~~~~~~---~~nl 76 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNG------VISSRLAGKIRFLDTREDEQTRGITMKSSAIS---LLHKDY---LINL 76 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhcc------Eechhhccceeeccccchhhhhceeeeccccc---cccCce---EEEE
Confidence 45899999999999999999975542 11111111111 1111111110000000 000122 2999
Q ss_pred EeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 99 IDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 99 iDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
||+|||-+|.....++.+-+|++++++|+.++...++...+++.-..+...++|+||+|.+.
T Consensus 77 idspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~ 138 (887)
T KOG0467|consen 77 IDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLI 138 (887)
T ss_pred ecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHH
Confidence 99999999999999999999999999999999999999999999888999999999999553
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=3e-11 Score=100.05 Aligned_cols=118 Identities=21% Similarity=0.349 Sum_probs=66.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCc------ceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGG------ITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
.+|.|+|.+|+|||||+|.|++.......... ............. ..+....+ .++|
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-l~e~~~~l----------------~Lti 67 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVE-LEENGVKL----------------NLTI 67 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEE-EEETCEEE----------------EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEE-eccCCcce----------------EEEE
Confidence 45999999999999999999987654332100 0000000000000 00111111 2999
Q ss_pred EeCCCCcch------------------HHHHHh---------hccCCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCEE
Q psy6316 99 IDTPGHESF------------------SNLRNR---------GSSLCDIAILVVDIMH-GLEPQTIESINILKSKKTPFV 150 (259)
Q Consensus 99 iDtpG~~~~------------------~~~~~~---------~~~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~pii 150 (259)
+||||..+. ...+.. .-...|++||+++++. ++.+.+.+.++.+... +++|
T Consensus 68 iDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvI 146 (281)
T PF00735_consen 68 IDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVI 146 (281)
T ss_dssp EEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEE
T ss_pred EeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEE
Confidence 999993321 100000 0124899999999874 6778888888888766 7789
Q ss_pred EEEecccccC
Q psy6316 151 VALNKIDRLY 160 (259)
Q Consensus 151 vv~NK~D~~~ 160 (259)
.|+.|+|...
T Consensus 147 PvIaKaD~lt 156 (281)
T PF00735_consen 147 PVIAKADTLT 156 (281)
T ss_dssp EEESTGGGS-
T ss_pred eEEecccccC
Confidence 9999999984
No 310
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.25 E-value=7.5e-11 Score=100.11 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=52.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCC--CcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEA--GGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+++|.||+|||||+|+|++........ .++....|....+..+.. ...... .|......++.++|+||
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~-~l~~~~-------~p~~~~~a~i~lvD~pG 75 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLD-KLAEIV-------KPKKIVPATIEFVDIAG 75 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccch-hhHHhc-------CCccccCceEEEEECCC
Confidence 49999999999999999998876432211 112222222221111000 000000 00011111399999999
Q ss_pred Ccc-------hHHHHHhhccCCCeEEEEEeCC
Q psy6316 104 HES-------FSNLRNRGSSLCDIAILVVDIM 128 (259)
Q Consensus 104 ~~~-------~~~~~~~~~~~ad~~i~v~d~~ 128 (259)
... ........++.+|++++|+|+.
T Consensus 76 L~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 76 LVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 321 2334445678999999999984
No 311
>PTZ00258 GTP-binding protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=100.03 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=53.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCC--cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAG--GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+|+++|.||+|||||+|+|.+........+ ++....+....+-.+.. ..... . .+......++.++|||
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~-~l~~~--~-----~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFD-WLCKH--F-----KPKSIVPAQLDITDIA 93 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhh-HHHHH--c-----CCcccCCCCeEEEECC
Confidence 4499999999999999999987765322211 11112222111100000 00000 0 0001111139999999
Q ss_pred CCc-------chHHHHHhhccCCCeEEEEEeCC
Q psy6316 103 GHE-------SFSNLRNRGSSLCDIAILVVDIM 128 (259)
Q Consensus 103 G~~-------~~~~~~~~~~~~ad~~i~v~d~~ 128 (259)
|.. .........++.+|++++|+|+.
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 932 13334455678999999999984
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.23 E-value=8.1e-12 Score=99.45 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=59.0
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
++.+++|.|..... ..+....+..+.|+|+.++.... .......+.|.++++||+|+.... ........+.+
T Consensus 104 d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~~~-~~~~~~~~~~l 175 (207)
T TIGR00073 104 DLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAEAV-GFDVEKMKADA 175 (207)
T ss_pred CEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccccc-hhhHHHHHHHH
Confidence 59999999921111 11122456667889987643321 122233457889999999997421 11122333334
Q ss_pred hhhhccccccccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++.. ...+++++||++|.|++.+++.+
T Consensus 176 ~~~~--~~~~i~~~Sa~~g~gv~~l~~~i 202 (207)
T TIGR00073 176 KKIN--PEAEIILMSLKTGEGLDEWLEFL 202 (207)
T ss_pred HHhC--CCCCEEEEECCCCCCHHHHHHHH
Confidence 3332 24678899999999998866554
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.22 E-value=7.1e-12 Score=102.98 Aligned_cols=186 Identities=16% Similarity=0.121 Sum_probs=90.0
Q ss_pred hhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCC
Q psy6316 7 KRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86 (259)
Q Consensus 7 ~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (259)
++....+.+.+.........|.|+|.+|+|||||++.+++.-........+..+.+... .....+........++....
T Consensus 87 ~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~-Da~rI~~~g~pvvqi~tG~~ 165 (290)
T PRK10463 87 KNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVN-DAARIRATGTPAIQVNTGKG 165 (290)
T ss_pred HhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHH-HHHHHHhcCCcEEEecCCCC
Confidence 33333334444344445667999999999999999998765322211111222222111 11111111000000111001
Q ss_pred CC------------CCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEe
Q psy6316 87 GP------------GPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALN 154 (259)
Q Consensus 87 ~~------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~N 154 (259)
|+ ......++.|+++-|....... .-+ ..+.-+.++++..+... .++.......+-++|+|
T Consensus 166 Chl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~--fdl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLN 238 (290)
T PRK10463 166 CHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPAS--FDL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLN 238 (290)
T ss_pred CcCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCc--cch-hhceeEEEEECcccccc----chhccchhhcCcEEEEE
Confidence 11 0111123777777773110000 001 12334567777655321 11222334567899999
Q ss_pred cccccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 155 KIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 155 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
|+|+... .....+...+.++.... ..+++++||++|+|++.++.++
T Consensus 239 KiDLl~~-~~~dle~~~~~lr~lnp--~a~I~~vSA~tGeGld~L~~~L 284 (290)
T PRK10463 239 KVDLLPY-LNFDVEKCIACAREVNP--EIEIILISATSGEGMDQWLNWL 284 (290)
T ss_pred hHHcCcc-cHHHHHHHHHHHHhhCC--CCcEEEEECCCCCCHHHHHHHH
Confidence 9999731 11122333333433332 4678899999999998866544
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=3.3e-11 Score=101.23 Aligned_cols=107 Identities=16% Similarity=0.067 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccc-hhhHH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMN-RRDVR 171 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~-~~~~~ 171 (259)
..+++|+||||.... ....+..+|.++++.....+ .+......- -..+|.++++||+|+........ .....
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~-l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~ 198 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAG-LMEIADIYVVNKADGEGATNVTIARLMLA 198 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHH-HhhhccEEEEEcccccchhHHHHHHHHHH
Confidence 345999999995422 22356778999988664432 232222211 13678899999999974321000 00000
Q ss_pred HHHhhhhc---cccccccccccccCcceeEEeecCCCC
Q psy6316 172 DIIKSQES---SVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 172 ~~~~~~~~---~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
..+..+.. .+..+++++||++|.|+++++..+...
T Consensus 199 ~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 199 LALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 11122211 233457899999999999987777554
No 315
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.21 E-value=8.4e-11 Score=96.69 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=51.4
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCC--cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAG--GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
|+++|.||+|||||+|+|++........+ ++....+....+..+.. ...... + |......++.++|+||.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~-~l~~~~--~-----~~k~~~~~i~lvD~pGl 72 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLD-KLAEIV--K-----PKKIVPATIEFVDIAGL 72 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhh-hHHHHh--C-----CceeeeeEEEEEECCCc
Confidence 58999999999999999998876322111 11222222211110000 000000 0 00000112999999993
Q ss_pred c-------chHHHHHhhccCCCeEEEEEeCC
Q psy6316 105 E-------SFSNLRNRGSSLCDIAILVVDIM 128 (259)
Q Consensus 105 ~-------~~~~~~~~~~~~ad~~i~v~d~~ 128 (259)
. .........++.+|++++|+|+.
T Consensus 73 ~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 73 VKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred CCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 13334455678999999999974
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1e-10 Score=97.95 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=63.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccC--CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQ--DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+++++|.||+|||||.|++...... +....+|.+..|....+..+-........ |+.....-.+.|+|.+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~-------c~~k~~~~~ve~vDIA 75 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVK-------CPPKIRPAPVEFVDIA 75 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcC-------CCCcEEeeeeEEEEec
Confidence 35999999999999999999877753 22334555555555444322111110011 1111222239999999
Q ss_pred C-------CcchHHHHHhhccCCCeEEEEEeCCC
Q psy6316 103 G-------HESFSNLRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 103 G-------~~~~~~~~~~~~~~ad~~i~v~d~~~ 129 (259)
| -+..+......++.+|+++.|+|+..
T Consensus 76 GLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 76 GLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 9 33466777788999999999999863
No 317
>KOG1143|consensus
Probab=99.20 E-value=2.5e-11 Score=100.81 Aligned_cols=138 Identities=24% Similarity=0.304 Sum_probs=88.6
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCccee--------eccccccCc-c--ccccccccccCCCCCCC-C
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQ--------QIGATNVPA-D--AIRENTKHVRGPGGEVG-G 87 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~--------~~~~~~~~~-~--~~~~~~~~~~~~~~~~~-~ 87 (259)
.+.| ++++|..++|||||+.-|.......+..++-.. ..|.+.... + ........+.+-+.-.+ .
T Consensus 166 ievR---vAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 166 IEVR---VAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred eEEE---EEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 3455 999999999999999999877665554422110 001000000 0 00000000000000000 0
Q ss_pred CCCCCCCCeEEEeCCCCcchHHHHHhhcc--CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 88 PGPLEIPGLLIIDTPGHESFSNLRNRGSS--LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 88 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~--~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.++-...-++|+|.+||..|.+.....+. -.|.+++|+.+..++.....+++..+...++|+.++++|+|+..
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc
Confidence 00000112999999999999887776664 47999999999999999999999999999999999999999984
No 318
>KOG0090|consensus
Probab=99.19 E-value=1.5e-10 Score=89.27 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=71.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+.|.++|..++|||+|.-.|..+.... +.+ ...+. ....... ...++++|.|||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~----Tvt------Siepn-----~a~~r~g-----------s~~~~LVD~PGH 92 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG----TVT------SIEPN-----EATYRLG-----------SENVTLVDLPGH 92 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC----eee------eeccc-----eeeEeec-----------CcceEEEeCCCc
Confidence 349999999999999999997663321 111 11110 0001101 112799999999
Q ss_pred cchHHHHHhhcc---CCCeEEEEEeCCCCCCH--HHHHHH-HHHH-----hCCCCEEEEEecccccCc
Q psy6316 105 ESFSNLRNRGSS---LCDIAILVVDIMHGLEP--QTIESI-NILK-----SKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 105 ~~~~~~~~~~~~---~ad~~i~v~d~~~~~~~--~~~~~l-~~~~-----~~~~piivv~NK~D~~~~ 161 (259)
.+.+.....++. .+-++|||+|+...... .-.+++ ..+. ....|++++.||.|+...
T Consensus 93 ~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 93 SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 999888888876 79999999997642111 112222 2222 235789999999999854
No 319
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.17 E-value=6.9e-11 Score=93.26 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
.++++++|.|..-.... . ...+|.+|.|+|++++...... . .......-++++||+|+... .....+...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~-~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~~~k~d~~~~-~~~~~~~~~~~ 163 (199)
T TIGR00101 92 LEMVFIESGGDNLSATF-S--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLVINKIDLAPM-VGADLGVMERD 163 (199)
T ss_pred CCEEEEECCCCCccccc-c--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhccEEEEEhhhcccc-ccccHHHHHHH
Confidence 45899999993211111 1 1236889999999875442211 1 11122334899999999731 11234444555
Q ss_pred HhhhhccccccccccccccCcceeEEeecCC
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
++.+. ...+++++||++|+|+++++..+.
T Consensus 164 ~~~~~--~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 164 AKKMR--GEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred HHHhC--CCCCEEEEECCCCCCHHHHHHHHH
Confidence 55553 257888999999999988665543
No 320
>KOG4423|consensus
Probab=99.13 E-value=3.7e-12 Score=95.70 Aligned_cols=150 Identities=21% Similarity=0.201 Sum_probs=103.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.++.|+|.-++|||+++.+.+...+...+..+++.+....-...+.. ...++.+||..||
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~--------------------t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDK--------------------TIVRLQLWDIAGQ 85 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChH--------------------HHHHHHHhcchhh
Confidence 45999999999999999999988887766666766554332222111 0012889999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHH-HHh-------CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINI-LKS-------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~-~~~-------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
++|+.+..-+++.+++..+|+|++++.++....-+.+ +.. .-.|+++..||||..+.. ..+.-..+..
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a----~~~~~~~~d~ 161 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA----KNEATRQFDN 161 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh----hhhhHHHHHH
Confidence 9999999999999999999999998776654333222 211 236789999999986431 1221223334
Q ss_pred hhccccc-cccccccccCcceeE
Q psy6316 177 QESSVQT-HKTVESARKGQEICI 198 (259)
Q Consensus 177 ~~~~~~~-~~i~~Sa~~g~gv~~ 198 (259)
+.+..++ ..+.+|++.+.++++
T Consensus 162 f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 162 FKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred HHhccCccceeeeccccccChhH
Confidence 4444343 466899998888876
No 321
>KOG0410|consensus
Probab=99.12 E-value=9.5e-11 Score=95.75 Aligned_cols=139 Identities=21% Similarity=0.266 Sum_probs=85.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+.|+++|.+|||||||+++|.+.....+. .-+.+.++ +.... .. +++. .+.+.||-|
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~d-------rLFATLDp--T~h~a-~L--------psg~----~vlltDTvG 235 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPND-------RLFATLDP--TLHSA-HL--------PSGN----FVLLTDTVG 235 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccc-------hhheeccc--hhhhc-cC--------CCCc----EEEEeechh
Confidence 578999999999999999999865543221 11111111 11100 00 0001 289999999
Q ss_pred Ccc---------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhCCCC-------EEEEEecccccCcccccc
Q psy6316 104 HES---------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKSKKTP-------FVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 104 ~~~---------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~~~p-------iivv~NK~D~~~~~~~~~ 166 (259)
+.. |.. .......+|+++.|.|.+.+.-....+ .+.-++..++| ++=|-||.|....+..
T Consensus 236 FisdLP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-- 312 (410)
T KOG0410|consen 236 FISDLPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-- 312 (410)
T ss_pred hhhhCcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--
Confidence 432 211 122346799999999999876655544 56667776664 4557788887532211
Q ss_pred hhhHHHHHhhhhccccccccccccccCcceeEEe
Q psy6316 167 RRDVRDIIKSQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
.-..-.+++||++|.|+++++
T Consensus 313 -------------~E~n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 313 -------------EEKNLDVGISALTGDGLEELL 333 (410)
T ss_pred -------------cccCCccccccccCccHHHHH
Confidence 111236789999999997644
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.12 E-value=1e-11 Score=99.41 Aligned_cols=101 Identities=24% Similarity=0.191 Sum_probs=60.1
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH--HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT--IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~--~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+++|+.|.|.... -......+|.+++|+-+..+..-|. .-++. +.-++|+||+|..... ....++..
T Consensus 123 D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~~gA~--~~~~~l~~ 191 (266)
T PF03308_consen 123 DVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKADRPGAD--RTVRDLRS 191 (266)
T ss_dssp SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--SHHHHH--HHHHHHHH
T ss_pred CEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCChHHHH--HHHHHHHH
Confidence 3999999994432 2234578999999999876544332 11222 2458999999976421 12333333
Q ss_pred HHhhh---hccccccccccccccCcceeEEeecCCCC
Q psy6316 173 IIKSQ---ESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 173 ~~~~~---~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.+... ...|..+++.+||.+|.|++++.+.+...
T Consensus 192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 33322 23345677899999999999976655443
No 323
>KOG3886|consensus
Probab=99.11 E-value=1.9e-10 Score=89.78 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=81.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+||||+=..+...... -.....+.++.......... +.+ -+.+||+.|+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~Rfl----Gnl----------------~LnlwDcGgq 63 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFL----GNL----------------VLNLWDCGGQ 63 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhh----hhh----------------eeehhccCCc
Confidence 67999999999999975555422111 11111222221111111000 111 1889999999
Q ss_pred cchHHHHHh-----hccCCCeEEEEEeCCCCCCHHHHHHHHH----HHhC--CCCEEEEEecccccCccc-ccchhhHHH
Q psy6316 105 ESFSNLRNR-----GSSLCDIAILVVDIMHGLEPQTIESINI----LKSK--KTPFVVALNKIDRLYNWN-TMNRRDVRD 172 (259)
Q Consensus 105 ~~~~~~~~~-----~~~~ad~~i~v~d~~~~~~~~~~~~l~~----~~~~--~~piivv~NK~D~~~~~~-~~~~~~~~~ 172 (259)
+.+-+.... .++..+++++|+|++......+....+. +... ..++...++|+|+..... +...+....
T Consensus 64 e~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~ 143 (295)
T KOG3886|consen 64 EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKE 143 (295)
T ss_pred HHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHH
Confidence 876655443 4678999999999987655555544333 2222 355778899999984321 111111222
Q ss_pred HHhhhhcccccccccccccc
Q psy6316 173 IIKSQESSVQTHKTVESARK 192 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~ 192 (259)
.+..+...+++.++++|...
T Consensus 144 ~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 144 DLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred HHHHhcccccccccccchhh
Confidence 23333344455566666553
No 324
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.11 E-value=6.6e-10 Score=92.65 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=82.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCC-cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAG-GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+|.++|++|.|||||+|.|++.....+... .........+......... +. . +-..-.++++||||
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~---l~---e------~~~~~~l~vIDtpG 91 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAE---LE---E------DGFHLNLTVIDTPG 91 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeee---ee---c------CCeEEEEEEeccCC
Confidence 5599999999999999999998854332100 0000000000000000000 00 0 00001299999999
Q ss_pred CcchH---HH-----------HHhhc--------------cCCCeEEEEEeCC-CCCCHHHHHHHHHHHhCCCCEEEEEe
Q psy6316 104 HESFS---NL-----------RNRGS--------------SLCDIAILVVDIM-HGLEPQTIESINILKSKKTPFVVALN 154 (259)
Q Consensus 104 ~~~~~---~~-----------~~~~~--------------~~ad~~i~v~d~~-~~~~~~~~~~l~~~~~~~~piivv~N 154 (259)
..++. .. ...++ ..+|++||++.++ ++..+.+.+.++.+... +.+|-|+.
T Consensus 92 fGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~ 170 (373)
T COG5019 92 FGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIA 170 (373)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeee
Confidence 43211 01 11111 2489999999987 46888888888877765 66788899
Q ss_pred cccccCcccccchhhHHHHHhhhhcccccccc
Q psy6316 155 KIDRLYNWNTMNRRDVRDIIKSQESSVQTHKT 186 (259)
Q Consensus 155 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 186 (259)
|+|.... .+....++.+.+.....++++|
T Consensus 171 KaD~lT~---~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 171 KADTLTD---DELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred ccccCCH---HHHHHHHHHHHHHHHHhCCcee
Confidence 9999843 2344444455544444444444
No 325
>KOG0469|consensus
Probab=99.10 E-value=1.7e-10 Score=99.17 Aligned_cols=150 Identities=24% Similarity=0.337 Sum_probs=101.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc----------------CCCCCCcceeeccccccCccccccccccccCCCCCCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV----------------QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGP 88 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (259)
+++.++.+.++|||||...|....- .....+.++.........++-..+....+...+..
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~---- 95 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG---- 95 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC----
Confidence 3688999999999999999964321 01111223322222222222211111111111100
Q ss_pred CCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchh
Q psy6316 89 GPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 89 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
..++ +++||.|||.+|.+....+++..|++++|+|+-++.--++...+.+....++.-++++||+|..--+-+...+
T Consensus 96 ~~FL---iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 96 NGFL---INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred ccee---EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 1233 8999999999999999999999999999999999887788888888887777778889999987656666677
Q ss_pred hHHHHHhhhhccc
Q psy6316 169 DVRDIIKSQESSV 181 (259)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (259)
++.+.+++.....
T Consensus 173 eLyqtf~R~VE~v 185 (842)
T KOG0469|consen 173 ELYQTFQRIVENV 185 (842)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777665543
No 326
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.08 E-value=3.7e-11 Score=91.80 Aligned_cols=167 Identities=19% Similarity=0.149 Sum_probs=89.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCcccccc-ccccccCCCCCCCCCC--------------
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRE-NTKHVRGPGGEVGGPG-------------- 89 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------- 89 (259)
..|.+.|++|+|||+|+.+++..-..+.....+..+.. +..+.+.... ....+.+..+...||.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~-t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIY-TKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceee-chhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 46999999999999999998765433322222222222 1111111111 1111222222222210
Q ss_pred CCCCCCeEEEeCCCCcchHHHHHhhccCCC-eEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchh
Q psy6316 90 PLEIPGLLIIDTPGHESFSNLRNRGSSLCD-IAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 90 ~~~~~~~~liDtpG~~~~~~~~~~~~~~ad-~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
.+..-++.|+...|-- . ........| .-|+|+|++.+..-..+-. .-.. ..-++|+||.|+... -....+
T Consensus 93 ~~~~~Dll~iEs~GNL--~--~~~sp~L~d~~~v~VidvteGe~~P~K~g---P~i~-~aDllVInK~DLa~~-v~~dle 163 (202)
T COG0378 93 DFPDLDLLFIESVGNL--V--CPFSPDLGDHLRVVVIDVTEGEDIPRKGG---PGIF-KADLLVINKTDLAPY-VGADLE 163 (202)
T ss_pred cCCcCCEEEEecCcce--e--cccCcchhhceEEEEEECCCCCCCcccCC---Ccee-EeeEEEEehHHhHHH-hCccHH
Confidence 1111258888888811 1 112223344 8899999988644221100 0000 135899999999842 222234
Q ss_pred hHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...+..++... +.+++++|+++|+|+++++..+
T Consensus 164 vm~~da~~~np--~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 164 VMARDAKEVNP--EAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred HHHHHHHHhCC--CCCEEEEeCCCCcCHHHHHHHH
Confidence 44455555544 4788999999999998865544
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.04 E-value=5.9e-10 Score=90.57 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=63.4
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
++.|+.|-|..... ......+|.+++|+=+.-+...|-... ....+.-|+|+||+|.... .....++...+
T Consensus 145 DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~~A--~~a~r~l~~al 215 (323)
T COG1703 145 DVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRKGA--EKAARELRSAL 215 (323)
T ss_pred CEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChhhH--HHHHHHHHHHH
Confidence 49999999944322 234467899999987765533332210 1122445899999996532 22233344444
Q ss_pred hhhh-----ccccccccccccccCcceeEEeecCCCC
Q psy6316 175 KSQE-----SSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 175 ~~~~-----~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
+... ..|..+++.+||.+|+|++++...+...
T Consensus 216 ~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 216 DLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred HhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 4332 3345577889999999999977766443
No 328
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.02 E-value=2e-09 Score=96.53 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=67.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+||||++|.|++......... ...++.... .. ... ....+.||||||.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~-----~~~TTr~~e-i~---~~i-------------dG~~L~VIDTPGL 176 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAF-----GMGTTSVQE-IE---GLV-------------QGVKIRVIDTPGL 176 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCC-----CCCceEEEE-EE---EEE-------------CCceEEEEECCCC
Confidence 4699999999999999999998864321100 011111100 00 000 0113999999994
Q ss_pred cch------HHH----HHhhcc--CCCeEEEEEeCCCCCC-HHHHHHHHHHHh-CC----CCEEEEEecccccC
Q psy6316 105 ESF------SNL----RNRGSS--LCDIAILVVDIMHGLE-PQTIESINILKS-KK----TPFVVALNKIDRLY 160 (259)
Q Consensus 105 ~~~------~~~----~~~~~~--~ad~~i~v~d~~~~~~-~~~~~~l~~~~~-~~----~piivv~NK~D~~~ 160 (259)
.+. ... ...++. .+|++|+|...+.... ..+...++.+.. .+ ..+|||+|.+|...
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 432 111 112333 5899999987653222 245556666554 22 46899999999985
No 329
>KOG2655|consensus
Probab=99.00 E-value=2.6e-09 Score=89.77 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=72.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.++.++|++|.|||||+|.|+...+..+............+..+...+.... -.+. .+ .++++||||.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie-e~g~--------~l---~LtvidtPGf 89 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE-ENGV--------KL---NLTVIDTPGF 89 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec-CCCe--------EE---eeEEeccCCC
Confidence 5699999999999999999988755433111000000001111111110000 0000 01 2999999993
Q ss_pred cchH--------------HHHHhh-----------c--cCCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCEEEEEecc
Q psy6316 105 ESFS--------------NLRNRG-----------S--SLCDIAILVVDIMH-GLEPQTIESINILKSKKTPFVVALNKI 156 (259)
Q Consensus 105 ~~~~--------------~~~~~~-----------~--~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~piivv~NK~ 156 (259)
.+.. .....+ + ..+|+++|.+.++. ++.+.+.++++.+... +.+|-|+.|+
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~-vNiIPVI~Ka 168 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK-VNLIPVIAKA 168 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc-ccccceeecc
Confidence 3211 111111 1 25899999999875 5888888888777654 6778889999
Q ss_pred cccC
Q psy6316 157 DRLY 160 (259)
Q Consensus 157 D~~~ 160 (259)
|...
T Consensus 169 D~lT 172 (366)
T KOG2655|consen 169 DTLT 172 (366)
T ss_pred ccCC
Confidence 9884
No 330
>KOG1547|consensus
Probab=98.97 E-value=3.1e-09 Score=83.55 Aligned_cols=141 Identities=20% Similarity=0.245 Sum_probs=80.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCccee-ecccccc---CccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQ-QIGATNV---PADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.+|.++|.+|.|||||+|.|+..+........... .+.-++. ......+..... +++++|
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVkl----------------kltviD 110 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKL----------------KLTVID 110 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEE----------------EEEEec
Confidence 57999999999999999999877654321111100 1100000 000111111111 299999
Q ss_pred CCCCcchH--------------HHHHhhc--------------cCCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCEEE
Q psy6316 101 TPGHESFS--------------NLRNRGS--------------SLCDIAILVVDIMH-GLEPQTIESINILKSKKTPFVV 151 (259)
Q Consensus 101 tpG~~~~~--------------~~~~~~~--------------~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~piiv 151 (259)
|||..+.. .....++ ..+++++|.+.++. .+.+-+.++++.+.+. +.+|-
T Consensus 111 TPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvP 189 (336)
T KOG1547|consen 111 TPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVP 189 (336)
T ss_pred CCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeee
Confidence 99933211 1111111 14789999999874 5667788888777654 55777
Q ss_pred EEecccccCcccccchhhHHHHHhhhhccccccc
Q psy6316 152 ALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHK 185 (259)
Q Consensus 152 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (259)
|+-|+|.+..+ ++.+.++.++......++.+
T Consensus 190 VIakaDtlTle---Er~~FkqrI~~el~~~~i~v 220 (336)
T KOG1547|consen 190 VIAKADTLTLE---ERSAFKQRIRKELEKHGIDV 220 (336)
T ss_pred eEeecccccHH---HHHHHHHHHHHHHHhcCccc
Confidence 89999988432 34455555555444433333
No 331
>KOG1486|consensus
Probab=98.89 E-value=1.5e-09 Score=85.89 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=52.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.|++|||||+..+....-. ...+.+++...- .+.+ .|+.-.+++.|.||.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-------aA~yeFTTLtcI-----pGvi-----------~y~ga~IQllDLPGI 119 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-------AASYEFTTLTCI-----PGVI-----------HYNGANIQLLDLPGI 119 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-------hhceeeeEEEee-----cceE-----------EecCceEEEecCccc
Confidence 45999999999999999999755431 222222222210 0111 222223999999993
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCC
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHG 130 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~ 130 (259)
.. -.....+..+.||++++|+|++.+
T Consensus 120 ieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 120 IEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 32 122334566889999999999864
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.89 E-value=1.8e-09 Score=82.06 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=63.3
Q ss_pred hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccc
Q psy6316 107 FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKT 186 (259)
Q Consensus 107 ~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 186 (259)
+..++...++.+|++++|+|++++....+..+...+...++|+++|+||+|+... ..... ........+.+++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~------~~~~~-~~~~~~~~~~~~~ 74 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK------EVLEK-WKSIKESEGIPVV 74 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH------HHHHH-HHHHHHhCCCcEE
Confidence 3456667778899999999998766555555655666678999999999998631 11111 1122222345778
Q ss_pred ccccccCcceeEEeecCC
Q psy6316 187 VESARKGQEICIKIEPIP 204 (259)
Q Consensus 187 ~~Sa~~g~gv~~~l~~i~ 204 (259)
++||++|.|+++++..+.
T Consensus 75 ~iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 75 YVSAKERLGTKILRRTIK 92 (156)
T ss_pred EEEccccccHHHHHHHHH
Confidence 999999999988665554
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.88 E-value=3.1e-09 Score=86.62 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=71.1
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCC-CHHHHH-HHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIE-SINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~-~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
+++..+...++..+|.+++|+|++++. +..... ++..+...++|+++|+||+|+... .....+..+.+ ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~-----~~~~~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD-----EDMEKEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC-----HHHHHHHHHHH-HHCC
Confidence 566666777889999999999998654 554433 555666678999999999999632 11111223333 2356
Q ss_pred ccccccccccCcceeEEeecCCCCCCcccc
Q psy6316 183 THKTVESARKGQEICIKIEPIPGEAPKMFG 212 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~ 212 (259)
.+++.+||++|.|+++++..+......+.+
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~~~~~~~G 127 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQNRISVFAG 127 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcCCEEEEEC
Confidence 788899999999999988777654444433
No 334
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.2e-08 Score=89.15 Aligned_cols=108 Identities=26% Similarity=0.388 Sum_probs=77.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|+||+|||||+..|....... ++....|..+..... .+.++|+.||.
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTvvsgK----------------------~RRiTflEcp~- 122 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITVVSGK----------------------TRRITFLECPS- 122 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEEeecc----------------------eeEEEEEeChH-
Confidence 447799999999999999997653321 122222222222111 11399999994
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEecccccCc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRLYN 161 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~~~ 161 (259)
+. ..+......||++++++|+.-++.-.+.+++..+...+.|-+ -|++..|+...
T Consensus 123 -Dl-~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 123 -DL-HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred -HH-HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC
Confidence 22 345566789999999999998888889999999999999855 58999999863
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.80 E-value=5.1e-09 Score=79.63 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=59.8
Q ss_pred hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccccc
Q psy6316 113 RGSSLCDIAILVVDIMHGLEPQTIESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESA 190 (259)
Q Consensus 113 ~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 190 (259)
..+..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+.. .++....+..+...+.+..+++||
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~------~~~~~~~~~~~~~~~~~~~~~iSa 77 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP------TWVTARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC------HHHHHHHHHHHhcCCcEEEEEeec
Confidence 56789999999999988765555555555554 3489999999999973 233334444444433444578999
Q ss_pred ccCcceeEEeecC
Q psy6316 191 RKGQEICIKIEPI 203 (259)
Q Consensus 191 ~~g~gv~~~l~~i 203 (259)
+++.|++.++..+
T Consensus 78 ~~~~~~~~L~~~l 90 (157)
T cd01858 78 NNPFGKGSLIQLL 90 (157)
T ss_pred cccccHHHHHHHH
Confidence 9999998755554
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=1.4e-08 Score=77.21 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..|+++|.+|+|||||+|+|.+...
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCc
Confidence 4599999999999999999987654
No 337
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.72 E-value=3.2e-08 Score=83.74 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=49.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-----------CHHHHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-----------EPQTIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-----------~~~~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+||++|+...+..|..++..+++++||+|.++-. ....+..+..+-. .+.|+++++||.|+.
T Consensus 162 ~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 162 KFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred EEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHH
Confidence 4889999999999999999999999999999987531 1111222333322 468999999999986
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.71 E-value=4.3e-08 Score=73.14 Aligned_cols=78 Identities=19% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccc
Q psy6316 111 RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVE 188 (259)
Q Consensus 111 ~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (259)
....+..+|++++|+|++++....+..+...+... ++|+++|+||+|+.. .+... .+.+.....+..++++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~------~~~~~-~~~~~~~~~~~~ii~i 77 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT------EEQRK-AWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC------HHHHH-HHHHHHHhcCCeEEEE
Confidence 44677899999999999887776666666766665 899999999999863 22222 2223333334678899
Q ss_pred ccccCcc
Q psy6316 189 SARKGQE 195 (259)
Q Consensus 189 Sa~~g~g 195 (259)
||.++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9999887
No 339
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.68 E-value=2e-08 Score=76.21 Aligned_cols=79 Identities=24% Similarity=0.234 Sum_probs=54.8
Q ss_pred CeEEEEEeCCCCCCHHHHHHH-HHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccccCccee
Q psy6316 119 DIAILVVDIMHGLEPQTIESI-NILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEIC 197 (259)
Q Consensus 119 d~~i~v~d~~~~~~~~~~~~l-~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~ 197 (259)
|++++|+|++++....+..+. ..+...++|+++|+||+|+.. .++....+..+.......++++||++|.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~------~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP------KEVLRKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC------HHHHHHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999876555444444 456667899999999999963 2223333333333334567899999999998
Q ss_pred EEeecC
Q psy6316 198 IKIEPI 203 (259)
Q Consensus 198 ~~l~~i 203 (259)
.+...+
T Consensus 75 ~L~~~i 80 (155)
T cd01849 75 KKESAF 80 (155)
T ss_pred hHHHHH
Confidence 876654
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.68 E-value=1.5e-08 Score=79.53 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=61.8
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh-hhhcccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK-SQESSVQ 182 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~ 182 (259)
...+...+..+++.+|++++|+|+++........+ .....++|+++|+||+|+...+. .......... ......+
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDK--NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCC--CHHHHHHHHHHHHHhhcC
Confidence 33357788889999999999999987543333333 12235689999999999874211 1111211110 0001111
Q ss_pred ---ccccccccccCcceeEEeecCCC
Q psy6316 183 ---THKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 183 ---~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..++++||++|.|+++++..+..
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 25788999999999987766644
No 341
>KOG3905|consensus
Probab=98.67 E-value=1.4e-07 Score=77.47 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=41.3
Q ss_pred CCCCEEEEEecccccC------cccccchhhHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 145 KKTPFVVALNKIDRLY------NWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 145 ~~~piivv~NK~D~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++|++||++|||.+. .......+-+...++++.-.++...|++|++...|++.+..+|
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 4689999999999852 1122233345556666666778888999999999988654444
No 342
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.67 E-value=1.1e-07 Score=81.29 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=49.6
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-----------CHHHHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-----------EPQTIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-----------~~~~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
+.+||.+|+...++.|..++..+++++||+|.++-. .......+..+-. .+.|+++++||.|+.
T Consensus 186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence 789999999999999999999999999999987521 1112233333332 368999999999987
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.66 E-value=8.6e-08 Score=83.37 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCcchHHHHHh----h--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNR----G--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~----~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
.+++|+||||.......+.. . ....|.+++|+|++.+.. .......+.+.-.+.-+|+||.|..
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHhccCCcEEEEECccCC
Confidence 35999999995433222221 1 235788999999876533 3444455554444567889999976
No 344
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.65 E-value=1.6e-07 Score=79.25 Aligned_cols=92 Identities=18% Similarity=0.120 Sum_probs=51.1
Q ss_pred CCeEEEeCCCCcchHHH----HHh---h-----ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 94 PGLLIIDTPGHESFSNL----RNR---G-----SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~----~~~---~-----~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
.+++|+||||....... +.. . -...+..++|+|++.+.. .........+.-.+.-+|+||.|....
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKlD~t~~ 274 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKLDGTAK 274 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECCCCCCC
Confidence 35999999995432211 111 1 135788999999986432 222233333222345688999996531
Q ss_pred ccccchhhHHHHHhhhhccccccccccccccCcceeE
Q psy6316 162 WNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
.-.+....... +.++.+++ .|++++.
T Consensus 275 -----~G~~l~~~~~~----~~Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 275 -----GGVVFAIADEL----GIPIKFIG--VGEGIDD 300 (318)
T ss_pred -----ccHHHHHHHHH----CCCEEEEe--CCCChhh
Confidence 22333333222 46666666 6777644
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.65 E-value=4e-08 Score=75.69 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=22.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..++++|.||+|||||+|+|.+...
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc
Confidence 4599999999999999999998654
No 346
>PRK00098 GTPase RsgA; Reviewed
Probab=98.64 E-value=3.8e-08 Score=82.61 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=59.4
Q ss_pred ccCCCeEEEEEeCCCCCC-HHH-HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccccccc
Q psy6316 115 SSLCDIAILVVDIMHGLE-PQT-IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARK 192 (259)
Q Consensus 115 ~~~ad~~i~v~d~~~~~~-~~~-~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 192 (259)
+..+|++++|+|++++.. ... .+++..+...++|+++|+||+|+... ...... ........+++++++||++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~-----~~~~~~-~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD-----LEEARE-LLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC-----HHHHHH-HHHHHHHCCCeEEEEeCCC
Confidence 488999999999976533 222 34566667788999999999998621 122222 2223334467888999999
Q ss_pred CcceeEEeecCCCC
Q psy6316 193 GQEICIKIEPIPGE 206 (259)
Q Consensus 193 g~gv~~~l~~i~~~ 206 (259)
|.|++.++..+...
T Consensus 152 g~gi~~L~~~l~gk 165 (298)
T PRK00098 152 GEGLDELKPLLAGK 165 (298)
T ss_pred CccHHHHHhhccCc
Confidence 99998877666543
No 347
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.63 E-value=2.9e-07 Score=70.01 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=36.5
Q ss_pred CeEEEeCCCCcchHHHHHh--------hccCCCeEEEEEeCCCCCCHH--HHHHHHHHHhCCCCEEEEEecccc
Q psy6316 95 GLLIIDTPGHESFSNLRNR--------GSSLCDIAILVVDIMHGLEPQ--TIESINILKSKKTPFVVALNKIDR 158 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~--------~~~~ad~~i~v~d~~~~~~~~--~~~~l~~~~~~~~piivv~NK~D~ 158 (259)
++.|+||||..+-...... ..-..|.+++++|+....... ......++... -++++||+|+
T Consensus 88 d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 88 DRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 5899999995433332221 234689999999986532211 11123333333 3678999995
No 348
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.61 E-value=2.6e-07 Score=76.39 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCcchHHHHH-------hhc-----cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 94 PGLLIIDTPGHESFSNLRN-------RGS-----SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~-------~~~-----~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
.+++|+||||......... ... ..+|.+++|+|++. ............+.-...-+++||+|....
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVGLTGIILTKLDGTAK 232 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCCCCEEEEEccCCCCC
Confidence 3599999999554332222 111 24899999999975 333444333333322345688999998632
Q ss_pred ccccchhhHHHHHhhhhccccccccccccccCcceeE
Q psy6316 162 WNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
.-......... +.++.+++ .|++++.
T Consensus 233 -----~G~~l~~~~~~----~~Pi~~~~--~Gq~~~d 258 (272)
T TIGR00064 233 -----GGIILSIAYEL----KLPIKFIG--VGEKIDD 258 (272)
T ss_pred -----ccHHHHHHHHH----CcCEEEEe--CCCChHh
Confidence 22233333322 35555555 6666543
No 349
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.61 E-value=1.9e-08 Score=75.89 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=23.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
++...++++|++|||||||+|+|.+..
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344679999999999999999998874
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.57 E-value=6.1e-08 Score=76.09 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..++++|.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 4699999999999999999987654
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.56 E-value=7.4e-08 Score=71.86 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=22.1
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
+++++|.+|+|||||+|+|++...
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999987764
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=98.56 E-value=3.3e-07 Score=77.70 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCeEEEeCCCCcchHHHH----Hhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccch
Q psy6316 94 PGLLIIDTPGHESFSNLR----NRG--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNR 167 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~----~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~ 167 (259)
.+++|+||||........ ... ....|.+++|+|++.+. ...+....+...-..--+++||.|.... .
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~~~-----~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDADAK-----G 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCCCC-----c
Confidence 359999999954322211 111 23578999999997642 3333344443322234677999998632 2
Q ss_pred hhHHHHHhhhhccccccccccccccCcceeE
Q psy6316 168 RDVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
-........ .+.++.+++ .|++++.
T Consensus 296 G~~ls~~~~----~~~Pi~~i~--~Gq~v~D 320 (336)
T PRK14974 296 GAALSIAYV----IGKPILFLG--VGQGYDD 320 (336)
T ss_pred cHHHHHHHH----HCcCEEEEe--CCCChhh
Confidence 223333322 245666665 6777744
No 353
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.54 E-value=2.7e-07 Score=81.47 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=93.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+|+|..++|||||+.+|.+..- ...+.+-.|.+....-+. . -....+.+|-..|
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~---~----------------dd~~rl~vw~L~g 82 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDED---R----------------DDLARLNVWELDG 82 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCc---C----------------CcCceeeEEEcCC
Confidence 45799999999999999999965431 122222222222111100 0 0011278888877
Q ss_pred CcchHHHHHhhcc----CCCeEEEEEeCCCCCCHHH--HHH-------------------------HHHHHh--------
Q psy6316 104 HESFSNLRNRGSS----LCDIAILVVDIMHGLEPQT--IES-------------------------INILKS-------- 144 (259)
Q Consensus 104 ~~~~~~~~~~~~~----~ad~~i~v~d~~~~~~~~~--~~~-------------------------l~~~~~-------- 144 (259)
...+..+....+. .--++|+|+|.+.++...+ ..| ...+++
T Consensus 83 ~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~ 162 (472)
T PF05783_consen 83 DPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSS 162 (472)
T ss_pred CcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccc
Confidence 5556666555443 2256888899988743211 000 011100
Q ss_pred --------------------------------CCCCEEEEEecccccCc------ccccchhhHHHHHhhhhcccccccc
Q psy6316 145 --------------------------------KKTPFVVALNKIDRLYN------WNTMNRRDVRDIIKSQESSVQTHKT 186 (259)
Q Consensus 145 --------------------------------~~~piivv~NK~D~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i 186 (259)
.++|++||++|+|.... +.+...+-+.+.++.+.-.++...|
T Consensus 163 ~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~ 242 (472)
T PF05783_consen 163 DSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLI 242 (472)
T ss_pred cccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEE
Confidence 24799999999997641 2222334456666777777788889
Q ss_pred ccccccCcceeEEeecC
Q psy6316 187 VESARKGQEICIKIEPI 203 (259)
Q Consensus 187 ~~Sa~~g~gv~~~l~~i 203 (259)
++|++...+++.+.+++
T Consensus 243 yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 243 YTSVKEEKNLDLLYKYI 259 (472)
T ss_pred EeeccccccHHHHHHHH
Confidence 99999988887644433
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.54 E-value=1.9e-07 Score=73.45 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=37.6
Q ss_pred CeEEEeCCCCcchHHHH----Hhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHh-CCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHESFSNLR----NRGS--SLCDIAILVVDIMHGLEPQTIESINILKS-KKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~----~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~-~~~piivv~NK~D~~~ 160 (259)
+++|+||||........ .... ...+-+++|++++.+. .+...+....+ .+.. =++++|.|...
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~~-~lIlTKlDet~ 154 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFYEAFGID-GLILTKLDETA 154 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHHHHSSTC-EEEEESTTSSS
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHhhcccCc-eEEEEeecCCC
Confidence 49999999955433221 1111 2578899999998743 33333333333 3433 45699999874
No 355
>PRK12289 GTPase RsgA; Reviewed
Probab=98.53 E-value=1.7e-07 Score=80.06 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=62.4
Q ss_pred HhhccCCCeEEEEEeCCCCC-CHHH-HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccc
Q psy6316 112 NRGSSLCDIAILVVDIMHGL-EPQT-IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVES 189 (259)
Q Consensus 112 ~~~~~~ad~~i~v~d~~~~~-~~~~-~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 189 (259)
...+..+|.+++|+|+.++. .... .+++......++|+++|+||+|+.. ..+...... ....+++.++++|
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~------~~~~~~~~~-~~~~~g~~v~~iS 156 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS------PTEQQQWQD-RLQQWGYQPLFIS 156 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC------hHHHHHHHH-HHHhcCCeEEEEE
Confidence 34578999999999997643 3322 3455555667899999999999973 222222222 2234567889999
Q ss_pred cccCcceeEEeecCCCCC
Q psy6316 190 ARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 190 a~~g~gv~~~l~~i~~~~ 207 (259)
|++|.|++.++..+....
T Consensus 157 A~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 157 VETGIGLEALLEQLRNKI 174 (352)
T ss_pred cCCCCCHHHHhhhhccce
Confidence 999999998877776544
No 356
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.49 E-value=5.9e-07 Score=72.32 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+|+|++++|||||+|.|++.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~ 30 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGT 30 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999987
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.48 E-value=8.9e-08 Score=73.85 Aligned_cols=94 Identities=21% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCC-cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 102 PGH-ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 102 pG~-~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
||| ..........+..+|++++|+|++.+....+..++..+ .++|+++|+||+|+... ......++. ...
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~------~~~~~~~~~-~~~ 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP------KKTKKWLKY-FES 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh------HHHHHHHHH-HHh
Confidence 452 23444556778999999999999876554444444433 35799999999998631 112122121 122
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....++.+||+++.|++.+...+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~ 97 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAK 97 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHH
Confidence 234578899999999988655443
No 358
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.47 E-value=1e-06 Score=66.21 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=38.3
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D 157 (259)
.++.|+||||.. ......+..+|.+++|..++. .+..-+........--++++||.|
T Consensus 92 ~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~----~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVG---QSEVDIASMADTTVVVMAPGA----GDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccC---hhhhhHHHhCCEEEEEECCCc----hhHHHHhhhhHhhhcCEEEEeCCC
Confidence 459999999954 223458899999999998762 222222222334445588999998
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.47 E-value=1.3e-07 Score=78.69 Aligned_cols=92 Identities=22% Similarity=0.202 Sum_probs=60.1
Q ss_pred CCC-cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 102 PGH-ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 102 pG~-~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
||| ..........+..+|++++|+|+..+.+..+..+...+ .++|+++|+||+|+.. ........+.+ ..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~------~~~~~~~~~~~-~~ 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLAD------PAVTKQWLKYF-EE 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCC------HHHHHHHHHHH-HH
Confidence 553 22334456678899999999999877665554454444 3689999999999863 12222222222 11
Q ss_pred ccccccccccccCcceeEEeec
Q psy6316 181 VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.+..++++||+++.|+..++..
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~ 97 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKA 97 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHH
Confidence 2356789999999999775433
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.47 E-value=2.4e-07 Score=70.20 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
...++++|.+|+|||||+|+|.+...
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHcccc
Confidence 35599999999999999999987654
No 361
>KOG3887|consensus
Probab=98.46 E-value=7.8e-07 Score=70.32 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=71.0
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..|+ |.|.++|...+||||+-.-.... ..+++..-+..+...+.. ++.+ ..-++.+|
T Consensus 24 ~~~k-p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d----------~is~-----------sfinf~v~ 80 (347)
T KOG3887|consen 24 SGMK-PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRD----------HISN-----------SFINFQVW 80 (347)
T ss_pred CCCC-ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHh----------hhhh-----------hhcceEEe
Confidence 3466 44999999999999976655433 322221111111111100 1110 01129999
Q ss_pred eCCCCcchH-H--HHHhhccCCCeEEEEEeCCCCCCHHHHHHHHH-HHh----CCCCEEEEEecccccCcc-cccchhhH
Q psy6316 100 DTPGHESFS-N--LRNRGSSLCDIAILVVDIMHGLEPQTIESINI-LKS----KKTPFVVALNKIDRLYNW-NTMNRRDV 170 (259)
Q Consensus 100 DtpG~~~~~-~--~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~-~~~----~~~piivv~NK~D~~~~~-~~~~~~~~ 170 (259)
|.|||-.+- . .....++++.+++||+|+.+.....-.++... .+. .++.+=+.+.|.|-+..+ ......++
T Consensus 81 dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI 160 (347)
T KOG3887|consen 81 DFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDI 160 (347)
T ss_pred ecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHH
Confidence 999965422 1 13345689999999999866322221111111 111 245667889999987532 22233344
Q ss_pred HHHHhhh
Q psy6316 171 RDIIKSQ 177 (259)
Q Consensus 171 ~~~~~~~ 177 (259)
.++.++.
T Consensus 161 ~qr~~d~ 167 (347)
T KOG3887|consen 161 HQRTNDE 167 (347)
T ss_pred HHHhhHH
Confidence 4444433
No 362
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=8.1e-08 Score=82.71 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+++++|.+|+|||||+|+|++.........+.+ ....++...... . .+ ..+.++||||.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s-~~pgtT~~~~~~-------~-~~-----------~~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTS-PFPGTTLDLIEI-------P-LD-----------DGHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeec-CCCCeEeeEEEE-------E-eC-----------CCCEEEECCCC
Confidence 3699999999999999999987543111100111 111111111100 0 01 12789999995
Q ss_pred cchHHH---HH----hh---ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 105 ESFSNL---RN----RG---SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 105 ~~~~~~---~~----~~---~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.....+ .. .. -.......+.++............+..+...+..+.+.+++.+...
T Consensus 215 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 215 INSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred CChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 432211 11 01 1346777888887654433333333334334455667777777654
No 363
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.45 E-value=4.9e-07 Score=77.09 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=55.7
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc-CCCC--CCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV-QDGE--AGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+++++|.||+|||||+|+|.+... .... ..++....+....+..+... ...... |.......+.++|.|
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~-L~~~~~-------~~~~~~a~i~~~Dia 75 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDL-LAIYIK-------PEKVPPTTTEFVDIA 75 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHH-HHHHhC-------CcCcCCceEEEEecc
Confidence 499999999999999999988865 3221 11222333322222111000 000000 000111128999999
Q ss_pred CCc-------chHHHHHhhccCCCeEEEEEeCC
Q psy6316 103 GHE-------SFSNLRNRGSSLCDIAILVVDIM 128 (259)
Q Consensus 103 G~~-------~~~~~~~~~~~~ad~~i~v~d~~ 128 (259)
|.. ..+......++.+|++++|+++.
T Consensus 76 Glv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 76 GLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 932 24456677889999999999985
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.44 E-value=3.2e-07 Score=76.67 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=61.7
Q ss_pred ccCCCeEEEEEeCCCCC-CHHHH-HHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccccccc
Q psy6316 115 SSLCDIAILVVDIMHGL-EPQTI-ESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARK 192 (259)
Q Consensus 115 ~~~ad~~i~v~d~~~~~-~~~~~-~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 192 (259)
+..+|.+++|+|+.++. +.... .++..+...++|+++|+||+|+... .+... ........+.+++++||++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~~~~-~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EEEEL-ELVEALALGYPVLAVSAKT 148 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HHHHH-HHHHHHhCCCeEEEEECCC
Confidence 68899999999998775 54433 3566667788999999999999632 11111 1222223467888999999
Q ss_pred CcceeEEeecCCCCCCccc
Q psy6316 193 GQEICIKIEPIPGEAPKMF 211 (259)
Q Consensus 193 g~gv~~~l~~i~~~~~~~~ 211 (259)
|.|++.+...+......+.
T Consensus 149 g~gi~~L~~~L~~k~~~~~ 167 (287)
T cd01854 149 GEGLDELREYLKGKTSVLV 167 (287)
T ss_pred CccHHHHHhhhccceEEEE
Confidence 9999887666654333333
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=5.5e-07 Score=77.23 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...++++|++|+||||++.+|....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997653
No 366
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.44 E-value=5.6e-07 Score=71.01 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCeEEEeCC-CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCC-CCEEEEEeccccc
Q psy6316 94 PGLLIIDTP-GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK-TPFVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtp-G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~-~piivv~NK~D~~ 159 (259)
.+++++||- |.+.|. ....+.+|.+|.|+|++........++-+...+.+ +++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 347888884 454444 24567899999999987644444445555566678 8899999999963
No 367
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.43 E-value=2.9e-07 Score=77.99 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..++++|-||+|||||||+|.+...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Confidence 4599999999999999999998876
No 368
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=2.7e-07 Score=77.11 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=23.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..+++++|.||+|||||+|+|.+.+.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 34699999999999999999998765
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=3.3e-07 Score=76.16 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=22.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..+++++|.||+|||||+|+|.+...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~ 143 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKV 143 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35699999999999999999987654
No 370
>KOG1487|consensus
Probab=98.40 E-value=1.7e-07 Score=74.72 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=51.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
++.++|.|++||||++..|.+..-. ...+..++...-.... .|....+.+.|.||..
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~-------vasyefttl~~vpG~~----------------~y~gaKiqlldlpgii 117 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSE-------VAAYEFTTLTTVPGVI----------------RYKGAKIQLLDLPGII 117 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCc-------cccccceeEEEecceE----------------eccccceeeecCcchh
Confidence 5999999999999999999766431 2222222221111111 1222239999999943
Q ss_pred c-------hHHHHHhhccCCCeEEEEEeCCCC
Q psy6316 106 S-------FSNLRNRGSSLCDIAILVVDIMHG 130 (259)
Q Consensus 106 ~-------~~~~~~~~~~~ad~~i~v~d~~~~ 130 (259)
+ -.+......+.|.++++|+|+-.+
T Consensus 118 egakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 118 EGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred cccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 2 223344566889999999998654
No 371
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=3.5e-07 Score=78.81 Aligned_cols=97 Identities=24% Similarity=0.260 Sum_probs=65.9
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQT 183 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (259)
.++|..+...+...++++++|+|+.+.......++...+ .+.|+++|+||+|+.... ...+...+.+.+.....++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~--~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS--VNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC--CCHHHHHHHHHHHHHHcCC
Confidence 456888888888899999999999765443333333222 268999999999997421 1233444444444444444
Q ss_pred ---cccccccccCcceeEEeecCC
Q psy6316 184 ---HKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 184 ---~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.++.+||++|.|+++++..+.
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHH
Confidence 467899999999998776663
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=98.37 E-value=3.8e-07 Score=77.91 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..++|+|.+|||||||+|+|++...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccc
Confidence 3589999999999999999987654
No 373
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.36 E-value=5e-07 Score=69.67 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
.+++++|.+|+|||||+|+|.+..+
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4699999999999999999997665
No 374
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.35 E-value=7.8e-07 Score=64.32 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=64.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|..|+|||+|+.++....+..... + .+.+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~------------------------------------------- 35 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG------------------------------------------- 35 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh-------------------------------------------
Confidence 59999999999999999996554421110 0 0000
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
+........+.++.++.|.+.+...+.... +...+.. ...|.+++.||.|+.... .. .....
T Consensus 36 -~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~-~~~~i~~~~k~dl~~~~~~nk~dl~~~~------~~-------~~~~~ 100 (124)
T smart00010 36 -IDVYDPTSYESFDVVLQCWRVDDRDSADNK-NVPEVLVGNKSDLPILVGGNRDVLEEER------QV-------ATEEG 100 (124)
T ss_pred -hhhccccccCCCCEEEEEEEccCHHHHHHH-hHHHHHhcCCCCCcEEEEeechhhHhhC------cC-------CHHHH
Confidence 112223456778899888887765443322 3333332 346788899999974210 11 01111
Q ss_pred ccccccccccCcce
Q psy6316 183 THKTVESARKGQEI 196 (259)
Q Consensus 183 ~~~i~~Sa~~g~gv 196 (259)
..++.+|+++|.|+
T Consensus 101 ~~~~~~s~~~~~~~ 114 (124)
T smart00010 101 LEFAETSAKTPEEG 114 (124)
T ss_pred HHHHHHhCCCcchh
Confidence 24556788888887
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=1.8e-06 Score=73.94 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=38.3
Q ss_pred CeEEEeCCCCcchHH----HHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHESFSN----LRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~~~~----~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
+++|+||||...... .+...+ ...+.+++|+|++.. .......+..+...+. -=++++|.|...
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk-~~d~~~i~~~F~~~~i-dglI~TKLDET~ 391 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNFKDIHI-DGIVFTKFDETA 391 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC-hHHHHHHHHHhcCCCC-CEEEEEcccCCC
Confidence 599999999543221 122222 346778999998642 1222445555555333 346799999874
No 376
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.32 E-value=9.8e-07 Score=68.49 Aligned_cols=64 Identities=28% Similarity=0.224 Sum_probs=36.1
Q ss_pred CCeEEEeCCCCcchHHHH--H---hhccCCCeEEEEEeCCCCCCHHH--HHHHHHHHhCCCCEEEEEecccccC
Q psy6316 94 PGLLIIDTPGHESFSNLR--N---RGSSLCDIAILVVDIMHGLEPQT--IESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~--~---~~~~~ad~~i~v~d~~~~~~~~~--~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.++.|+.+.|........ . ...-..+.++.|+|+..-..... ..+..++ ..--++++||+|+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFADVIVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-SEEEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcCEEEEeccccCC
Confidence 358999999955544431 1 11235689999999965311111 1122333 233488899999984
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.30 E-value=5.4e-06 Score=63.95 Aligned_cols=63 Identities=24% Similarity=0.252 Sum_probs=38.1
Q ss_pred CeEEEeCCCCcchHHHHH----hh--ccCCCeEEEEEeCCCCCCHHHHHHHHHH-HhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHESFSNLRN----RG--SSLCDIAILVVDIMHGLEPQTIESINIL-KSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~----~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~-~~~~~piivv~NK~D~~~ 160 (259)
++.++||||...+..... .. ....|.+++|+|+... ....+..... ...+ ..-+++||.|...
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 489999999643222211 11 1358999999998643 2233333333 3334 3567789999864
No 378
>KOG1491|consensus
Probab=98.30 E-value=1.3e-06 Score=72.33 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=56.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCC--cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAG--GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+++|+|.||+|||||+|+|..........+ ++...-+....+..+.. ....++..... ... .+++.|.+
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd-~l~~~Y~~~~~----vpa---~l~v~DIA 92 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFD-LLCPIYGPKSK----VPA---FLTVYDIA 92 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHH-HHHHhcCCcce----eee---eEEEEeec
Confidence 4699999999999999999988776433222 22222221111111110 00111111000 001 29999999
Q ss_pred C-------CcchHHHHHhhccCCCeEEEEEeCCC
Q psy6316 103 G-------HESFSNLRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 103 G-------~~~~~~~~~~~~~~ad~~i~v~d~~~ 129 (259)
| -...+....+.++.+|+++.|+++..
T Consensus 93 GLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 93 GLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 9 23356667788899999999999853
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.30 E-value=6.5e-07 Score=73.03 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
...++++|.+|+|||||+|+|.+...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhh
Confidence 35699999999999999999987643
No 380
>KOG0082|consensus
Probab=98.30 E-value=1.6e-06 Score=73.08 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC--CH------H---HHHHHHHHHh----CCCCEEEEEec
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL--EP------Q---TIESINILKS----KKTPFVVALNK 155 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~--~~------~---~~~~l~~~~~----~~~piivv~NK 155 (259)
++...+.++|.+||..-++.|...+.+++++|||++.++-. .. . .+.++..+-+ .+.++|+.+||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 34445999999999999999999999999999999986421 11 1 1222222222 35789999999
Q ss_pred cccc
Q psy6316 156 IDRL 159 (259)
Q Consensus 156 ~D~~ 159 (259)
.|+.
T Consensus 272 ~DLF 275 (354)
T KOG0082|consen 272 KDLF 275 (354)
T ss_pred HHHH
Confidence 9997
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.29 E-value=7.9e-07 Score=76.02 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..++|+|.+|+|||||+|+|++...
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccc
Confidence 4589999999999999999987643
No 382
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.29 E-value=4.2e-07 Score=75.98 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=59.1
Q ss_pred CCCCc-chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 101 TPGHE-SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 101 tpG~~-~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
-|||= .-.......+..+|++|+|+|+..+.+..+..+...+. ++|+++|+||+|+.. ..........+ .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~------~~~~~~~~~~~-~ 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLAD------PEVTKKWIEYF-E 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCC------HHHHHHHHHHH-H
Confidence 36642 22334556788999999999998776655444444443 789999999999862 11122222222 1
Q ss_pred cccccccccccccCcceeEEee
Q psy6316 180 SVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
..+..++.+||+++.|++.++.
T Consensus 78 ~~~~~vi~vSa~~~~gi~~L~~ 99 (287)
T PRK09563 78 EQGIKALAINAKKGQGVKKILK 99 (287)
T ss_pred HcCCeEEEEECCCcccHHHHHH
Confidence 2235678899999999876443
No 383
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.28 E-value=3.7e-06 Score=73.83 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred CeEEEeCCCCcchHHHHH------hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRN------RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~------~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+||||.......+. ..+..+|.+++|+|++.+ .........+... .+ .-+|+||.|..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~-l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEA-VGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHhc-CCCCEEEEecccCC
Confidence 599999999554332221 223468999999998775 2233333333322 23 35778999975
No 384
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=7.7e-07 Score=73.30 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.3
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
++....+++|++|+|||||+|+|...
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCch
Confidence 34456999999999999999999864
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=98.24 E-value=1.7e-06 Score=74.34 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=60.2
Q ss_pred ccCCCeEEEEEeCCCCCCHHH-HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccccC
Q psy6316 115 SSLCDIAILVVDIMHGLEPQT-IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKG 193 (259)
Q Consensus 115 ~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 193 (259)
+..+|.+++|+++...+.... ..++..+...+++.++|+||+|+... .++..+.+... ..+.+++.+|+++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-----~~~~~~~~~~~--~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-----AEEKIAEVEAL--APGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-----HHHHHHHHHHh--CCCCcEEEEECCCC
Confidence 467999999999977666643 44677778889999999999999732 12223333333 34678889999999
Q ss_pred cceeEEeecCC
Q psy6316 194 QEICIKIEPIP 204 (259)
Q Consensus 194 ~gv~~~l~~i~ 204 (259)
.|++.+...+.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99987665553
No 386
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.24 E-value=1.7e-06 Score=65.63 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.+++++|.+|+||||++|+|.+..
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998654
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.23 E-value=3.2e-06 Score=72.30 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=68.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCcccc---c--cccccccCCCCCCCCC--------C
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAI---R--ENTKHVRGPGGEVGGP--------G 89 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~--------~ 89 (259)
..+.|+++|++||||||.+..|......... ...++..+.+.-+. . .....+.+.+.++... .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~----~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK----KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc----CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 3578999999999999999999655441000 01111111111111 0 0001111111111111 1
Q ss_pred CCCCCCeEEEeCCCCcchHHHHH----hhcc--CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 90 PLEIPGLLIIDTPGHESFSNLRN----RGSS--LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 90 ~~~~~~~~liDtpG~~~~~~~~~----~~~~--~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.+...+++|+||.|...+..... .++. ...-+.+|++++.. ...-.+.+.+....+..- +++||.|...
T Consensus 278 ~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~~-~I~TKlDET~ 352 (407)
T COG1419 278 ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPIDG-LIFTKLDETT 352 (407)
T ss_pred HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcce-eEEEcccccC
Confidence 24444699999999655443322 3332 23345667777552 333455666666666554 4589999874
No 388
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.22 E-value=2.9e-05 Score=66.42 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=22.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.|..++.|.-|||||||+|+++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567999999999999999999864
No 389
>PRK13796 GTPase YqeH; Provisional
Probab=98.21 E-value=1.3e-06 Score=75.42 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..+.++|.+|||||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 469999999999999999998654
No 390
>KOG3859|consensus
Probab=98.21 E-value=3.9e-06 Score=67.78 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=65.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeec--cccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI--GATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
..+|..+|.+|.|||||++.|.+.++......-....+ ...+...... ... . .++++||
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs---nvr-------------l---KLtiv~t 102 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES---NVR-------------L---KLTIVDT 102 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc---Cee-------------E---EEEEEee
Confidence 46799999999999999999999887644322211111 1111111111 001 1 1999999
Q ss_pred CCCcc-------hHHH-------HHh-------------h--ccCCCeEEEEEeCCCC-CCHHHHHHHHHHHhCCCCEEE
Q psy6316 102 PGHES-------FSNL-------RNR-------------G--SSLCDIAILVVDIMHG-LEPQTIESINILKSKKTPFVV 151 (259)
Q Consensus 102 pG~~~-------~~~~-------~~~-------------~--~~~ad~~i~v~d~~~~-~~~~~~~~l~~~~~~~~piiv 151 (259)
.|..+ |... ... . -...++++|.+.++.. +-.-+.-.++.+. ..+.+|-
T Consensus 103 vGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIP 181 (406)
T KOG3859|consen 103 VGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIP 181 (406)
T ss_pred cccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHH
Confidence 99221 1111 111 1 1458899999998753 2222233333332 2356777
Q ss_pred EEeccccc
Q psy6316 152 ALNKIDRL 159 (259)
Q Consensus 152 v~NK~D~~ 159 (259)
++-|+|-+
T Consensus 182 vIAKaDti 189 (406)
T KOG3859|consen 182 VIAKADTI 189 (406)
T ss_pred HHHHhhhh
Confidence 88999987
No 391
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.20 E-value=9.4e-06 Score=68.66 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=46.0
Q ss_pred CCeEEEeCCCCcchHHHHHhhcc--------CCCeEEEEEeCCCCCCHHH-H-HHHHHHHhCCCCEEEEEecccccCccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSS--------LCDIAILVVDIMHGLEPQT-I-ESINILKSKKTPFVVALNKIDRLYNWN 163 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~--------~ad~~i~v~d~~~~~~~~~-~-~~l~~~~~~~~piivv~NK~D~~~~~~ 163 (259)
.+..++.|.|..+-.......+. ..+.++.|+|+.......+ . ....++. ..-++++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~-- 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILLTKTDVAGE-- 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEEEeccccCCH--
Confidence 35899999997665554443321 3588999999975322111 1 1122333 334788999999842
Q ss_pred ccchhhHHHHHhhhhc
Q psy6316 164 TMNRRDVRDIIKSQES 179 (259)
Q Consensus 164 ~~~~~~~~~~~~~~~~ 179 (259)
.+.+...++.+..
T Consensus 166 ---~~~~~~~l~~lnp 178 (318)
T PRK11537 166 ---AEKLRERLARINA 178 (318)
T ss_pred ---HHHHHHHHHHhCC
Confidence 2445555555443
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=98.20 E-value=2.1e-06 Score=73.41 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=62.2
Q ss_pred ccCCCeEEEEEeCCCCCCHHHHH-HHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccccC
Q psy6316 115 SSLCDIAILVVDIMHGLEPQTIE-SINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKG 193 (259)
Q Consensus 115 ~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g 193 (259)
+..+|.+++|++.+...+....+ ++......++|+++|+||+|+.... .......... .....+.+++++||++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~---~~~~~~~~~~-~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE---GRAFVNEQLD-IYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH---HHHHHHHHHH-HHHhCCCeEEEEeCCCC
Confidence 35699999999987766665544 5555566789999999999997421 1112222222 22344678899999999
Q ss_pred cceeEEeecCCCCCCcc
Q psy6316 194 QEICIKIEPIPGEAPKM 210 (259)
Q Consensus 194 ~gv~~~l~~i~~~~~~~ 210 (259)
.|+++++..+......+
T Consensus 194 ~GideL~~~L~~ki~~~ 210 (347)
T PRK12288 194 EGLEELEAALTGRISIF 210 (347)
T ss_pred cCHHHHHHHHhhCCEEE
Confidence 99998777665543333
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=4.9e-06 Score=73.95 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+|+|++|+||||++.+|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 394
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.16 E-value=2.4e-05 Score=66.03 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=81.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc------CCCCCCcceeec-ccc-ccCccccccccccccCC---CC------CCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV------QDGEAGGITQQI-GAT-NVPADAIRENTKHVRGP---GG------EVGG 87 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~------~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~---~~------~~~~ 87 (259)
|..++.|.-|||||||+|.|+...- ..++.+.++.+- +.. ....+...-..+.++|- +. -..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-
Confidence 5689999999999999999986543 223333344331 111 11111111111222221 00 000
Q ss_pred CCCCCCCCeEEEeCCCCcchHHHHHhhc--------cCCCeEEEEEeCCCCCCHHH---HHHHHHHHhCCCCEEEEEecc
Q psy6316 88 PGPLEIPGLLIIDTPGHESFSNLRNRGS--------SLCDIAILVVDIMHGLEPQT---IESINILKSKKTPFVVALNKI 156 (259)
Q Consensus 88 ~~~~~~~~~~liDtpG~~~~~~~~~~~~--------~~ad~~i~v~d~~~~~~~~~---~~~l~~~~~~~~piivv~NK~ 156 (259)
.....+..+|.|-|...-.+...... -..|.++-|+|+........ .....|+. ..-++++||.
T Consensus 81 --~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~ 155 (323)
T COG0523 81 --RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKT 155 (323)
T ss_pred --ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecc
Confidence 01113589999999655444433322 24688999999976433222 12223333 3348899999
Q ss_pred cccCcccccchhhHHHHHhhhhcccccccccccc
Q psy6316 157 DRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESA 190 (259)
Q Consensus 157 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 190 (259)
|+..++ ..+.+...++++... .+++.+|.
T Consensus 156 Dlv~~~---~l~~l~~~l~~lnp~--A~i~~~~~ 184 (323)
T COG0523 156 DLVDAE---ELEALEARLRKLNPR--ARIIETSY 184 (323)
T ss_pred cCCCHH---HHHHHHHHHHHhCCC--CeEEEccc
Confidence 999542 234445555555542 34444444
No 395
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.16 E-value=6.5e-06 Score=81.08 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=64.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccc-cccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGA-TNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
-|=.+|+|++|+||||+++.- |-.+. .....+. .......++.+. -+..++-+++||+
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~p------l~~~~~~~~~~~~~~t~~c~--------------wwf~~~avliDta 169 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFP------LAERLGAAALRGVGGTRNCD--------------WWFTDEAVLIDTA 169 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCc------CchhhccccccCCCCCcccc--------------eEecCCEEEEcCC
Confidence 366899999999999999987 32221 1100000 000000111000 0111237899999
Q ss_pred C----Cc----chHHHHHhhc---------cCCCeEEEEEeCCCCCC--HHHH-H-------HHHHHHh---CCCCEEEE
Q psy6316 103 G----HE----SFSNLRNRGS---------SLCDIAILVVDIMHGLE--PQTI-E-------SINILKS---KKTPFVVA 152 (259)
Q Consensus 103 G----~~----~~~~~~~~~~---------~~ad~~i~v~d~~~~~~--~~~~-~-------~l~~~~~---~~~piivv 152 (259)
| ++ .....|...+ +..+++|+++|+.+-.. .... . .+..+.. .+.|++++
T Consensus 170 G~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv 249 (1169)
T TIGR03348 170 GRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLV 249 (1169)
T ss_pred CccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9 21 2223344332 45899999999875432 2221 1 2222222 46899999
Q ss_pred EecccccC
Q psy6316 153 LNKIDRLY 160 (259)
Q Consensus 153 ~NK~D~~~ 160 (259)
+||||++.
T Consensus 250 ~Tk~Dll~ 257 (1169)
T TIGR03348 250 LTKADLLA 257 (1169)
T ss_pred Eecchhhc
Confidence 99999884
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=1.4e-05 Score=69.75 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|++|+||||++..|.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.11 E-value=3.8e-06 Score=70.19 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
...++++|++|+|||||+|+|++...
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhh
Confidence 45799999999999999999987654
No 398
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=5.7e-06 Score=70.69 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|++|+||||++..|...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=3.8e-06 Score=70.59 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
...++++|++|+|||||+|+|++...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC
Confidence 34699999999999999999987654
No 400
>PRK10867 signal recognition particle protein; Provisional
Probab=98.08 E-value=1.3e-05 Score=70.31 Aligned_cols=64 Identities=23% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCeEEEeCCCCcchHHHHH----h--hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 94 PGLLIIDTPGHESFSNLRN----R--GSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~----~--~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
.+++|+||||......... . ..-..+.+++|+|+..+ .........+.+.-...-+|+||.|..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 3599999999443222111 1 12256788999998642 223334444443211235678999965
No 401
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=3.2e-05 Score=66.97 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++..|+++|++|+||||.+..|...
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999643
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.04 E-value=1.6e-05 Score=69.74 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=36.7
Q ss_pred CeEEEeCCCCcchHHHHHh------hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNR------GSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~------~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++|+||||.......... ..-..|.+++|+|++.+ .........+...-...=+|+||.|..
T Consensus 184 DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 184 DVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 5999999995432222111 12357889999998643 233444444432212234669999964
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.03 E-value=2.9e-05 Score=68.26 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=37.1
Q ss_pred CCeEEEeCCCCcchH----HHHHhhcc---CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 94 PGLLIIDTPGHESFS----NLRNRGSS---LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 94 ~~~~liDtpG~~~~~----~~~~~~~~---~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.+++|+||||..... ..+...+. ...-+.+|++++.+ ...-.+.+..+...+. --+++||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~~~f~~~~~-~~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIYKHFSRLPL-DGLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHHHHhCCCCC-CEEEEecccccc
Confidence 359999999954332 12222332 23466888888652 1122334455544442 257899999864
No 404
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=1.5e-05 Score=69.14 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.2
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+...++++|++|+||||++..|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999753
No 405
>KOG1707|consensus
Probab=98.01 E-value=3.1e-05 Score=68.61 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=69.6
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
+.+.....++|+.++|||.+++.++++.+..++..+....+..+....... . +.+.+-|
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~----------~-----------k~LiL~e 480 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQ----------Q-----------KYLILRE 480 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccc----------c-----------ceEEEee
Confidence 444566999999999999999999998776543333333333222222100 0 0155555
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHH--HhCCCCEEEEEecccccC
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL--KSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~--~~~~~piivv~NK~D~~~ 160 (259)
.+-. ...-....- ..||++.+++|.++..+..-...+... .....|+++|++|+|+..
T Consensus 481 i~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 481 IGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDE 540 (625)
T ss_pred cCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccch
Confidence 5532 111111111 679999999998865444433322211 125789999999999863
No 406
>KOG0447|consensus
Probab=98.00 E-value=7e-05 Score=66.02 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=50.4
Q ss_pred eEEEeCCCC-------------cchHHHHHhhccCCCeEEEEEeCCCC--CCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 96 LLIIDTPGH-------------ESFSNLRNRGSSLCDIAILVVDIMHG--LEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 96 ~~liDtpG~-------------~~~~~~~~~~~~~ad~~i~v~d~~~~--~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.+++|.||. +....+...+++...++|+|+--.+- ....--++..++...+...|+|++|.|+..
T Consensus 414 MVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 414 MVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAE 493 (980)
T ss_pred eEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhh
Confidence 899999992 22445556788999999999853221 111112355666778899999999999974
Q ss_pred cccccchhhHHHHH
Q psy6316 161 NWNTMNRRDVRDII 174 (259)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (259)
. .-.....+.+.+
T Consensus 494 k-nlA~PdRI~kIl 506 (980)
T KOG0447|consen 494 K-NVASPSRIQQII 506 (980)
T ss_pred h-ccCCHHHHHHHH
Confidence 2 222344444444
No 407
>KOG1424|consensus
Probab=97.97 E-value=6.4e-06 Score=71.79 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=23.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
.+|++||-||+||||+||+|.|.+.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCce
Confidence 6799999999999999999998876
No 408
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.97 E-value=8.7e-05 Score=63.83 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccccccc--CcceeEEeecCC
Q psy6316 135 TIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARK--GQEICIKIEPIP 204 (259)
Q Consensus 135 ~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~--g~gv~~~l~~i~ 204 (259)
+.+.+..+++.++|+++++|-.+=. .++..+...++....+.+.++++|.+ ...+..+++.++
T Consensus 169 EervI~ELk~igKPFvillNs~~P~-------s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 169 EERVIEELKEIGKPFVILLNSTKPY-------SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCC-------CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 3557889999999999999988743 34455556666677778888877743 333433444333
No 409
>KOG1534|consensus
Probab=97.95 E-value=1.4e-05 Score=62.04 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=39.4
Q ss_pred CeEEEeCCCCcc------hHHHHHhhccC---CCeEEEEEeCCCCCCHHHH------HHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHES------FSNLRNRGSSL---CDIAILVVDIMHGLEPQTI------ESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~------~~~~~~~~~~~---ad~~i~v~d~~~~~~~~~~------~~l~~~~~~~~piivv~NK~D~~ 159 (259)
++.++|||||.+ .-+.....+.+ -=+++|++|+. -....++ .-+..+....+|.|=|++|+|++
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 499999999543 22222233322 23578888853 2222222 22344455789999999999998
Q ss_pred C
Q psy6316 160 Y 160 (259)
Q Consensus 160 ~ 160 (259)
+
T Consensus 178 k 178 (273)
T KOG1534|consen 178 K 178 (273)
T ss_pred h
Confidence 5
No 410
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.94 E-value=4e-05 Score=63.93 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
-++..|+|+|-.|+||||.+..|.....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~ 164 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLK 164 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHH
Confidence 4577899999999999999999975533
No 411
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=2.4e-05 Score=72.65 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...|+|+|++|+||||++.+|.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3479999999999999999998654
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=3.2e-05 Score=68.57 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...++|+|++|+||||++..|....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3579999999999999999998654
No 413
>PRK13796 GTPase YqeH; Provisional
Probab=97.92 E-value=1.4e-05 Score=69.03 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=58.1
Q ss_pred chHHHHHhhccCCC-eEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccccc-
Q psy6316 106 SFSNLRNRGSSLCD-IAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQT- 183 (259)
Q Consensus 106 ~~~~~~~~~~~~ad-~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (259)
+|.... ..+..+| ++++|+|+.+....... .+.... .+.|+++|+||+|+... ....+.+...+.......++
T Consensus 58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~~s~~~-~L~~~~-~~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~ 132 (365)
T PRK13796 58 DFLKLL-NGIGDSDALVVNVVDIFDFNGSWIP-GLHRFV-GNNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLR 132 (365)
T ss_pred HHHHHH-HhhcccCcEEEEEEECccCCCchhH-HHHHHh-CCCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCC
Confidence 455543 4445455 99999999874433222 222222 26899999999999742 11233344444444444443
Q ss_pred --cccccccccCcceeEEeecCC
Q psy6316 184 --HKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 184 --~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.++.+||++|.|+++++..+.
T Consensus 133 ~~~v~~vSAk~g~gI~eL~~~I~ 155 (365)
T PRK13796 133 PVDVVLISAQKGHGIDELLEAIE 155 (365)
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 567899999999988776663
No 414
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.89 E-value=4.8e-05 Score=62.70 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=38.1
Q ss_pred CeEEEeCCCCcchH----HHHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHESFS----NLRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~~~----~~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
++.|+||||..... ..+...+ ...+-+++|+|++.. ...-.+.++.....+. -=++++|.|...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~~f~~~~~-~~~I~TKlDet~ 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNFKDIHI-DGIVFTKFDETA 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHHHhCCCCC-CEEEEEeecCCC
Confidence 59999999954322 1122222 345778999998652 1123345555554333 346799999874
No 415
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=8.7e-05 Score=55.45 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|++.|+||+||||++.++...
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHH
Confidence 999999999999999998644
No 416
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.87 E-value=6.6e-05 Score=62.18 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.9
Q ss_pred hhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 9 REKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 9 ~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
-+++++....++..|.++++++|++|.|||++++++....
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 3566677777788889999999999999999999997654
No 417
>KOG2485|consensus
Probab=97.84 E-value=1.5e-05 Score=65.52 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
+.+.|+|-||+|||||+|++.....
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~L 168 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHL 168 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHh
Confidence 6699999999999999999965443
No 418
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.82 E-value=0.00011 Score=51.80 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=38.9
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCC----CCEEEEEec
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK----TPFVVALNK 155 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~----~piivv~NK 155 (259)
+.++|||+... ......+..+|.++++++++..........+..+++.+ .++.+|+|+
T Consensus 45 ~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 45 YVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 99999999643 33445778999999999986543333344555555433 356778875
No 419
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=6.1e-05 Score=72.88 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=41.6
Q ss_pred eEEEeCCC----Cc----chHHHHHhh---------ccCCCeEEEEEeCCCCCC--HHHH-HHH-------HHHHh---C
Q psy6316 96 LLIIDTPG----HE----SFSNLRNRG---------SSLCDIAILVVDIMHGLE--PQTI-ESI-------NILKS---K 145 (259)
Q Consensus 96 ~~liDtpG----~~----~~~~~~~~~---------~~~ad~~i~v~d~~~~~~--~~~~-~~l-------~~~~~---~ 145 (259)
-++|||.| +. .-...|... .+..+++|+.+|+.+-.+ ..+. ... ..+.+ .
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~ 255 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA 255 (1188)
T ss_pred eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 78999999 32 122333322 357899999999875332 3332 122 22222 4
Q ss_pred CCCEEEEEecccccC
Q psy6316 146 KTPFVVALNKIDRLY 160 (259)
Q Consensus 146 ~~piivv~NK~D~~~ 160 (259)
..|+++++||+|+..
T Consensus 256 ~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 256 RLPVYLVLTKADLLP 270 (1188)
T ss_pred CCceEEEEecccccc
Confidence 689999999999985
No 420
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.79 E-value=0.00027 Score=54.51 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=44.0
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+|||+.... .....+..+|.+|++++++..........+..+...+.+ ..+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 5999999985433 344567899999999998654333334455666655544 56889999865
No 421
>PRK13695 putative NTPase; Provisional
Probab=97.79 E-value=4.9e-05 Score=58.69 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=29.2
Q ss_pred hccCCCeEEEEEe---CCCCCCHHHHHHHHHHHhCCCCEEEEEeccc
Q psy6316 114 GSSLCDIAILVVD---IMHGLEPQTIESINILKSKKTPFVVALNKID 157 (259)
Q Consensus 114 ~~~~ad~~i~v~d---~~~~~~~~~~~~l~~~~~~~~piivv~NK~D 157 (259)
.+..+|+ +++| ..+.......+.+..+.+.+.|++++.||..
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred ccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 4456776 6888 4444445556667777678899999999854
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.78 E-value=0.00017 Score=53.60 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~~ 159 (259)
+++++|||+.. .......+..+|.++++++++..........++.+... ..++.+++|+++..
T Consensus 46 d~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 46 DYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 39999999853 33445678999999999998653222234455555432 35678999999754
No 423
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.75 E-value=6.8e-05 Score=57.78 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=39.5
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHH--HHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 119 DIAILVVDIMHGLEPQTIESINI--LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 119 d~~i~v~d~~~~~~~~~~~~l~~--~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
|++++|+|+..+....+..+... +...++|+++|+||+|+.. .+.+...++.+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~------~~~l~~~~~~~~~ 57 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP------KENVEKWLKYLRR 57 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC------HHHHHHHHHHHHh
Confidence 78999999988776666666655 4556799999999999973 3344444444443
No 424
>KOG2423|consensus
Probab=97.67 E-value=4e-05 Score=65.00 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.7
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
.|+|+|.||+||||+||.|...++
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 399999999999999999977765
No 425
>KOG0099|consensus
Probab=97.60 E-value=0.00021 Score=57.53 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=49.8
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC--------CHHHHHHHHHHHh-------CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL--------EPQTIESINILKS-------KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~--------~~~~~~~l~~~~~-------~~~piivv~NK~D~~ 159 (259)
.|+.+|.+|+.+-...|...+.+..++|||+.+++-. +..-.+.+..++. ..+.+|+.+||.|++
T Consensus 203 ~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 203 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred ceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 3899999999999999999999999999999986521 1111233433332 247899999999987
Q ss_pred C
Q psy6316 160 Y 160 (259)
Q Consensus 160 ~ 160 (259)
.
T Consensus 283 a 283 (379)
T KOG0099|consen 283 A 283 (379)
T ss_pred H
Confidence 3
No 426
>KOG1533|consensus
Probab=97.59 E-value=4e-05 Score=60.63 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=37.1
Q ss_pred CCeEEEeCCCCcch------HHHHHhhccCCCe---EEEEEeCCCCCCHHH-----HHHHHHHHhCCCCEEEEEeccccc
Q psy6316 94 PGLLIIDTPGHESF------SNLRNRGSSLCDI---AILVVDIMHGLEPQT-----IESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtpG~~~~------~~~~~~~~~~ad~---~i~v~d~~~~~~~~~-----~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
.++.++|+|||.++ .....+.+..-|. ++-++|+.--..+.. .-.+..+-....|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 34999999995431 1222333333443 444555421111111 122334445678889999999998
Q ss_pred Cc
Q psy6316 160 YN 161 (259)
Q Consensus 160 ~~ 161 (259)
+.
T Consensus 177 ~~ 178 (290)
T KOG1533|consen 177 KK 178 (290)
T ss_pred Hh
Confidence 64
No 427
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.59 E-value=0.00051 Score=53.16 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=48.2
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
.+++|+|||+... ......+..+|.+++++.++..........++.++..+.|+.+|+||+|..
T Consensus 93 ~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 93 AELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 3599999997532 234456788999999999875433444566777777888999999999964
No 428
>KOG2484|consensus
Probab=97.54 E-value=0.00021 Score=60.81 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=57.7
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHH-h-CCCCEEEEEecccccCcccccchhhHHHHHhhhhcccc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK-S-KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~-~-~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (259)
..|.+.....+..+|++|.|+|+.++.+....+.-.++. . .++..|+|+||+|++ ..+...+++..+...+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV------PrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV------PREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC------CHHHHHHHHHHHHhhCC
Confidence 346677777888999999999999987766555545543 2 348899999999999 45666667776666554
Q ss_pred ccccccccc
Q psy6316 183 THKTVESAR 191 (259)
Q Consensus 183 ~~~i~~Sa~ 191 (259)
..+|..|..
T Consensus 208 tv~fkast~ 216 (435)
T KOG2484|consen 208 TVAFKASTQ 216 (435)
T ss_pred cceeecccc
Confidence 444444443
No 429
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.54 E-value=0.0004 Score=42.45 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=26.9
Q ss_pred hccCCCeEEEEEeCCCCCCHH---HHHHHHHHHhC--CCCEEEEEeccc
Q psy6316 114 GSSLCDIAILVVDIMHGLEPQ---TIESINILKSK--KTPFVVALNKID 157 (259)
Q Consensus 114 ~~~~ad~~i~v~d~~~~~~~~---~~~~l~~~~~~--~~piivv~NK~D 157 (259)
..+-.++++|++|++...... ....++.++.. ++|+++|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 346789999999998754432 34455666653 899999999998
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.53 E-value=0.00061 Score=46.54 Aligned_cols=71 Identities=23% Similarity=0.246 Sum_probs=46.6
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHES 106 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 106 (259)
+++.|..|+||||+...+...-...+.. . ...+ ++.++|+||...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~------v----~~~~-------------------------d~iivD~~~~~~ 46 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR------V----LLID-------------------------DYVLIDTPPGLG 46 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe------E----EEEC-------------------------CEEEEeCCCCcc
Confidence 7889999999999999996543221110 0 0000 199999999543
Q ss_pred hHHH-HHhhccCCCeEEEEEeCCCCCC
Q psy6316 107 FSNL-RNRGSSLCDIAILVVDIMHGLE 132 (259)
Q Consensus 107 ~~~~-~~~~~~~ad~~i~v~d~~~~~~ 132 (259)
.... .......+|.++++++......
T Consensus 47 ~~~~~~~~~~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 47 LLVLLCLLALLAADLVIIVTTPEALAV 73 (99)
T ss_pred chhhhhhhhhhhCCEEEEecCCchhhH
Confidence 3221 2456678999999999865433
No 431
>KOG0780|consensus
Probab=97.53 E-value=0.00037 Score=59.16 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
-|+-.|.++|--|+||||.+-.|..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHH
Confidence 4466799999999999999988853
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.00059 Score=58.96 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=36.0
Q ss_pred CeEEEeCCCCcchHHHHH------hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE-EEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRN------RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPF-VVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~------~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi-ivv~NK~D~~ 159 (259)
+++|+||+|.......+. ...-..|=+++|+|+.-+.... ...+.+.+. .++ =++++|+|-.
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~--~~A~aF~e~-l~itGvIlTKlDGd 252 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAV--NTAKAFNEA-LGITGVILTKLDGD 252 (451)
T ss_pred CEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHH--HHHHHHhhh-cCCceEEEEcccCC
Confidence 499999999443333222 2234689999999998754322 222233221 222 2557888854
No 433
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.52 E-value=0.00052 Score=52.64 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcchHHHHHhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRG--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~ 159 (259)
+++|+|||+... ...... +..+|.+++|..++..........+..+...+.+++ +++|+.+..
T Consensus 69 D~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 69 DYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 499999999542 222222 268899999998865444455667788888887764 789998864
No 434
>KOG1144|consensus
Probab=97.47 E-value=0.00027 Score=64.43 Aligned_cols=71 Identities=62% Similarity=0.957 Sum_probs=66.6
Q ss_pred ccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHHhhccC
Q psy6316 189 SARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKKVFQIL 259 (259)
Q Consensus 189 Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 259 (259)
+|+.|.-+...+.....+.+.+|+.++...+.+++.+.|+.+|.|+.||+.....-+|.|++.+.++|.|+
T Consensus 994 ~akkGqeVaiKie~~~~e~~~mfGRHf~~~D~LyS~isR~SId~lK~~fr~el~~~dw~Lv~~Lk~~f~I~ 1064 (1064)
T KOG1144|consen 994 YAKKGQEVAIKIEASNGEEQKMFGRHFDMEDILYSHISRRSIDILKKAFRDELTKDDWQLVVKLKKLFGII 1064 (1064)
T ss_pred hhhcCCeEEEEEecCCCCCcchhhcccCccchHHHHhhHhhHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 56788888888888889999999999999999999999999999999999999999999999999999985
No 435
>KOG2743|consensus
Probab=97.44 E-value=0.00075 Score=55.45 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.7
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
+.-|.|.-.+.|.-|||||||+|+++...
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccC
Confidence 44567889999999999999999997553
No 436
>KOG2484|consensus
Probab=97.41 E-value=0.00013 Score=61.95 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=22.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
...++|+|-||+||||+||+|...+.
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhcc
Confidence 45599999999999999999977654
No 437
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.33 E-value=0.0011 Score=46.44 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=44.8
Q ss_pred EEEEe-eCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 27 VCVLG-HVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 27 I~v~G-~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
|++.| ..|+||||+...|...-...+. +....+ ..+. .++.++|+|+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-~vl~~d-----~d~~------------------------~d~viiD~p~~~ 51 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK-RVLLID-----LDPQ------------------------YDYIIIDTPPSL 51 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC-cEEEEe-----CCCC------------------------CCEEEEeCcCCC
Confidence 67777 6799999998888544332111 111111 1111 139999999964
Q ss_pred chHHHHHhhccCCCeEEEEEeCCC
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~ 129 (259)
. ......+..+|.++++++++.
T Consensus 52 ~--~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 52 G--LLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred C--HHHHHHHHHCCEEEEeccCCH
Confidence 3 333477788999999999754
No 438
>PHA02518 ParA-like protein; Provisional
Probab=97.33 E-value=0.0028 Score=50.21 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=38.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH---HHHHHHhC--CCCE-EEEEecccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE---SINILKSK--KTPF-VVALNKIDR 158 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~---~l~~~~~~--~~pi-ivv~NK~D~ 158 (259)
+++|+||||.. .......+..+|.+|+++.++........+ .+...... +.|. .++.|+.+.
T Consensus 78 d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 78 DYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 59999999963 355667888999999999986532222222 23332222 3443 466777654
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00028 Score=60.86 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
.++++|.+|+|||||+|.|++...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 699999999999999999987543
No 440
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.24 E-value=0.00072 Score=57.46 Aligned_cols=96 Identities=23% Similarity=0.120 Sum_probs=68.9
Q ss_pred EEEeCCCCc-chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 97 LIIDTPGHE-SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 97 ~liDtpG~~-~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
.+-+.|||- .+.......+..+|+++.|+|+.++.+.....+-..+... |.++|+||+|+.. .....+..+
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k--~~i~vlNK~DL~~------~~~~~~W~~ 84 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEK--PKLLVLNKADLAP------KEVTKKWKK 84 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccC--CcEEEEehhhcCC------HHHHHHHHH
Confidence 344458854 4666677888999999999999988776665555555443 4499999999983 445666666
Q ss_pred hhhccccccccccccccCcceeEEe
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
.+....+...+.+|++.+.+...+.
T Consensus 85 ~~~~~~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 85 YFKKEEGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred HHHhcCCCccEEEEeecccCccchH
Confidence 6666556677888898888876643
No 441
>KOG4181|consensus
Probab=97.21 E-value=0.0039 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.|+++|.-|+|||||++.|.+..
T Consensus 190 VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccC
Confidence 59999999999999999997664
No 442
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.21 E-value=0.00031 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
..+|.|+.|+||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999853
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00025 Score=56.92 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.|+++|++|||||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999997654
No 444
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.15 E-value=0.00035 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 445
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00058 Score=52.45 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPA 68 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (259)
.-+++.|++|+||||++++|+... .+...+..||.++
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-------~l~~SVS~TTR~p 41 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-------KLRFSVSATTRKP 41 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-------CeEEEEEeccCCC
Confidence 358999999999999999998776 1455556666654
No 446
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.07 E-value=0.00033 Score=58.44 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...|+|+|++|+||||++..|....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999996544
No 447
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.07 E-value=0.0011 Score=54.94 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=64.2
Q ss_pred ccCCCeEEEEEeCCCC-CCHHHH-HHHHHHHhCCCCEEEEEecccccCcccccchhhHH-HHHhhhhccccccccccccc
Q psy6316 115 SSLCDIAILVVDIMHG-LEPQTI-ESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR-DIIKSQESSVQTHKTVESAR 191 (259)
Q Consensus 115 ~~~ad~~i~v~d~~~~-~~~~~~-~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~Sa~ 191 (259)
+...|-+++|+.+.++ ++..-+ +++-.....++..++++||+|+...+ +.. +........++.+.+.+|++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~------~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE------EAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch------HHHHHHHHHHHHhCCeeEEEecCc
Confidence 3446666777666543 444443 46666777888888999999998532 112 34555666678899999999
Q ss_pred cCcceeEEeecCCCCCCccccc
Q psy6316 192 KGQEICIKIEPIPGEAPKMFGR 213 (259)
Q Consensus 192 ~g~gv~~~l~~i~~~~~~~~~~ 213 (259)
++.|++.+...+......+.++
T Consensus 151 ~~~~~~~l~~~l~~~~svl~Gq 172 (301)
T COG1162 151 NGDGLEELAELLAGKITVLLGQ 172 (301)
T ss_pred CcccHHHHHHHhcCCeEEEECC
Confidence 9999988777776665555544
No 448
>KOG0085|consensus
Probab=97.06 E-value=0.00048 Score=54.50 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=45.3
Q ss_pred CCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCC-----------CCCHHHHHHHHHHHh----CCCCEEEEEe
Q psy6316 90 PLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH-----------GLEPQTIESINILKS----KKTPFVVALN 154 (259)
Q Consensus 90 ~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~piivv~N 154 (259)
+..+..+.++|.+|+..-...|...+.....++|++..+. ......+.++..+.. .+.++|+.+|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 3333448899999998888888877766666665554322 112222333333333 4688999999
Q ss_pred cccccC
Q psy6316 155 KIDRLY 160 (259)
Q Consensus 155 K~D~~~ 160 (259)
|.|++.
T Consensus 275 KkDlLE 280 (359)
T KOG0085|consen 275 KKDLLE 280 (359)
T ss_pred hhhhhh
Confidence 999983
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.04 E-value=0.00039 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.|+++|++|+|||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 49999999999999999996543
No 450
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.02 E-value=0.0045 Score=51.16 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=37.9
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHH----hCCCCE-EEEEecccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK----SKKTPF-VVALNKIDR 158 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~----~~~~pi-ivv~NK~D~ 158 (259)
.+++|+||||..... .....+..+|.+|+++.++..........+..+. ..+.++ .+++|++|.
T Consensus 116 yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 459999999853211 1233478899999999875432222223333332 234443 368999984
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.02 E-value=0.00053 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 59999999999999999998764
No 452
>KOG0781|consensus
Probab=97.02 E-value=0.002 Score=56.30 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
-|+..|.|+|-.|+||||-+..++.+
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayW 401 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYW 401 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHH
Confidence 37899999999999999999999655
No 453
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.00045 Score=53.21 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+|+|.+|+|||||...|...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999998643
No 454
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.99 E-value=0.0033 Score=50.86 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=40.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHH------hCCCCEEEEEeccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK------SKKTPFVVALNKID 157 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~------~~~~piivv~NK~D 157 (259)
+++|+||||... ......+..+|.+|+.+.++........+.+..+. ..+.|..+++|+++
T Consensus 85 D~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 85 DYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 599999999664 44566778999999888875422212223332322 23577789999987
No 455
>KOG0052|consensus
Probab=96.98 E-value=0.00064 Score=57.89 Aligned_cols=66 Identities=32% Similarity=0.404 Sum_probs=50.9
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCC-CCEEEEEecccccCc
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKK-TPFVVALNKIDRLYN 161 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~-~piivv~NK~D~~~~ 161 (259)
++++|.|||.++.+.+....+++|++++++.+..+ ...+..++......++ .++++.+||+|....
T Consensus 84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred EEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 89999999999999999999999999999988332 2234455544444554 578899999998753
No 456
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00052 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+|+|+|||||||+...|...
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999765
No 457
>PRK08233 hypothetical protein; Provisional
Probab=96.97 E-value=0.00059 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
|+...|+|.|.+|+|||||.++|...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999999754
No 458
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.96 E-value=0.00056 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|+|++|+|||||+|-+.|-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 49999999999999999997654
No 459
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.91 E-value=0.00069 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
++.+.++|+|.+|+|||||+++|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 45678999999999999999999755
No 460
>KOG0446|consensus
Probab=96.90 E-value=0.00046 Score=63.77 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=43.1
Q ss_pred CeEEEeCCCC-------------cchHHHHHhhccCCCeEEEEEeCCCC--CCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGH-------------ESFSNLRNRGSSLCDIAILVVDIMHG--LEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~-------------~~~~~~~~~~~~~ad~~i~v~d~~~~--~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
.++++|+||. ..+..+...++.....+++.+.+.+. .+...+.........+...+-|++|.|+.
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 4899999992 12556677788888888888876541 11122333333334556778888888887
Q ss_pred C
Q psy6316 160 Y 160 (259)
Q Consensus 160 ~ 160 (259)
.
T Consensus 213 d 213 (657)
T KOG0446|consen 213 D 213 (657)
T ss_pred h
Confidence 4
No 461
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.88 E-value=0.00078 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+++|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999644
No 462
>PRK08118 topology modulation protein; Reviewed
Probab=96.83 E-value=0.00082 Score=51.51 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
+|+|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999654
No 463
>KOG3347|consensus
Probab=96.83 E-value=0.00078 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.7
Q ss_pred ccccEEEEEeeCCCChhHHHhHHh
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~ 45 (259)
+.-|+|+|.|.||+|||||..+|.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 446889999999999999999996
No 464
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.82 E-value=0.0075 Score=48.07 Aligned_cols=64 Identities=8% Similarity=-0.075 Sum_probs=36.7
Q ss_pred CCeEEEeCCCCcchHHHHHhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC----CCC-EEEEEecccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRG--SSLCDIAILVVDIMHGLEPQTIESINILKSK----KTP-FVVALNKIDR 158 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~----~~p-iivv~NK~D~ 158 (259)
.+++++||+|........ .. .+.+|.+++++.++......-...++.+++. +.+ ..++.||++.
T Consensus 117 yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 117 LDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 469999998854221111 11 2479999999987542221122333334432 333 3489999985
No 465
>PRK14530 adenylate kinase; Provisional
Probab=96.81 E-value=0.0009 Score=53.52 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.2
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.++|+|+|.||+||||+.+.|...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999643
No 466
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.79 E-value=0.004 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
+.++|+|..|+|||||+.+|...-.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHH
Confidence 4699999999999999999965543
No 467
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.77 E-value=0.001 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+++|.+|+||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999643
No 468
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0021 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..-|+++|++|+|||||+++|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345999999999999999999765
No 469
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.75 E-value=0.0012 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
|.|+|+|+.|+|||||+..|+..-.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999976543
No 470
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.75 E-value=0.0032 Score=55.11 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=48.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC--------CCH---HHHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG--------LEP---QTIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~--------~~~---~~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.++|++|+...++.|..++..++++|||++.++- ... ..+..+..+-. .+.|+|+++||.|+.
T Consensus 237 ~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 237 KFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp EEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHH
T ss_pred ccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHH
Confidence 389999999999999999999999999999997531 111 12333333322 368999999999987
No 471
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.00092 Score=56.66 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
-++++|++|||||||++.+.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999997654
No 472
>KOG0705|consensus
Probab=96.73 E-value=0.00096 Score=59.05 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=83.1
Q ss_pred CcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 18 DENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 18 ~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
..++|| ++|+|..++|||+|+.+.+...+.+.+.+.-+ +.....+.. .+..-+.
T Consensus 27 sipelk---~givg~~~sgktalvhr~ltgty~~~e~~e~~-------------~~kkE~vv~----------gqs~lLl 80 (749)
T KOG0705|consen 27 SIPELK---LGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-------------RFKKEVVVD----------GQSHLLL 80 (749)
T ss_pred ccchhh---eeeeecccCCceeeeeeeccceeccccCCcCc-------------cceeeEEee----------ccceEee
Confidence 345677 99999999999999999876665433221111 111111100 0001166
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHH-----hCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK-----SKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~-----~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+.|-+|+.+ ..+...+|++|||+...+..+++....+..-. ...+|++++.++.-...... ....-.+
T Consensus 81 irdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~--rv~~da~ 153 (749)
T KOG0705|consen 81 IRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRP--RVITDDR 153 (749)
T ss_pred eecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccc--cccchHH
Confidence 777777432 35667889999999988877777766543221 23466666666532221110 0111111
Q ss_pred HHhhhhccccccccccccccCcceeEEe
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
..........+.++..+|..|.++...+
T Consensus 154 ~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 154 ARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred HHHHHHhcCccceeecchhhhhhHHHHH
Confidence 1222233335677788888888886533
No 473
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.72 E-value=0.01 Score=47.44 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=39.5
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHH---HHHHHHHHH---hCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQ---TIESINILK---SKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~---~~~~l~~~~---~~~~piivv~NK~D~~ 159 (259)
+|+|+||+|... ......+..+|.+|+-+-.+...-.. ...++..+. ...+|..|++|++.-.
T Consensus 85 d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 85 DFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA 153 (231)
T ss_pred CEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc
Confidence 489999999653 23445567899988877654321111 122333332 2468999999999843
No 474
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.70 E-value=0.0011 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 59999999999999999998753
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.69 E-value=0.0012 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5999999999999999999654
No 476
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0013 Score=52.49 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|++|||||||++.|.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 399999999999999999976
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.67 E-value=0.0013 Score=46.22 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEEEEeeCCCChhHHHhHHh
Q psy6316 26 IVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~ 45 (259)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 49999999999999999985
No 478
>PLN02200 adenylate kinase family protein
Probab=96.67 E-value=0.0016 Score=52.74 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=27.7
Q ss_pred hhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 9 REKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 9 ~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
..++++.+.+.+..++..|+++|.||+||||+...|..
T Consensus 28 ~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 28 IITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred ccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455555555434456789999999999999999964
No 479
>KOG1424|consensus
Probab=96.66 E-value=0.0031 Score=55.52 Aligned_cols=72 Identities=19% Similarity=0.057 Sum_probs=52.4
Q ss_pred hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccc
Q psy6316 114 GSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESAR 191 (259)
Q Consensus 114 ~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 191 (259)
.+..+|++|.++|+.++.....-.+-..+++. ++..++++||+|++. .+.......+....++++++.||.
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~-------~~qr~aWa~YF~~~ni~~vf~SA~ 243 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLP-------PEQRVAWAEYFRQNNIPVVFFSAL 243 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCC-------HHHHHHHHHHHHhcCceEEEEecc
Confidence 45779999999999998665555555555553 477899999999983 334444555555556888899998
Q ss_pred c
Q psy6316 192 K 192 (259)
Q Consensus 192 ~ 192 (259)
.
T Consensus 244 ~ 244 (562)
T KOG1424|consen 244 A 244 (562)
T ss_pred c
Confidence 6
No 480
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.65 E-value=0.0013 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998763
No 481
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.65 E-value=0.00099 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.6
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
+|+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 4999999999999999999755
No 482
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.63 E-value=0.0014 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..++++|++|+|||||++.|++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999765
No 483
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.62 E-value=0.0014 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998753
No 484
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0015 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=19.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
-.++++|++|+|||||++.|.+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999544
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0014 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998764
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.62 E-value=0.0015 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.8
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+...|+|.|.+|+|||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999764
No 487
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.61 E-value=0.0015 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 59999999999999999998763
No 488
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0015 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
No 489
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.0039 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.1
Q ss_pred EEEEeeCCCChhHHHhHHhcccc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~ 49 (259)
++|.|++|+|||+++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999976543
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.61 E-value=0.0015 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
-.++++|++|+|||||++.|.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998753
No 491
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.60 E-value=0.0016 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
.+.|+++|.+|+||||+++.|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 492
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.60 E-value=0.0016 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999654
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.59 E-value=0.0015 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999764
No 494
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.58 E-value=0.0016 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 495
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0015 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..++++|++|+|||||++.|.+-
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999875
No 496
>PTZ00301 uridine kinase; Provisional
Probab=96.57 E-value=0.0017 Score=51.69 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
|+...|+|.|.+|+|||||.+.|..
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHH
Confidence 4456799999999999999988753
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.57 E-value=0.0016 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999664
No 498
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.56 E-value=0.0017 Score=50.26 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.++++|++|+|||||++.++.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 499999999999999998863
No 499
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0017 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
No 500
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0017 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998753
Done!