Query psy6316
Match_columns 259
No_of_seqs 171 out of 2154
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 23:21:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 99.9 2.7E-26 9.2E-31 192.4 13.8 195 21-247 7-220 (308)
2 1wf3_A GTP-binding protein; GT 99.9 1.2E-25 4.2E-30 187.5 14.8 189 22-246 5-211 (301)
3 4dkx_A RAS-related protein RAB 99.9 2.3E-26 8E-31 183.0 5.8 158 22-205 11-172 (216)
4 3j2k_7 ERF3, eukaryotic polype 99.9 1.9E-25 6.5E-30 195.6 9.8 144 95-257 96-254 (439)
5 1wb1_A Translation elongation 99.9 2.7E-25 9.2E-30 196.6 8.0 183 20-258 15-210 (482)
6 2lkc_A Translation initiation 99.9 2.4E-25 8.3E-30 171.5 5.6 154 23-203 7-165 (178)
7 4bas_A ADP-ribosylation factor 99.9 1.7E-24 5.7E-29 169.9 10.2 156 20-203 13-183 (199)
8 1r2q_A RAS-related protein RAB 99.9 4E-25 1.4E-29 168.7 6.2 156 22-203 4-163 (170)
9 1svi_A GTP-binding protein YSX 99.9 1.3E-24 4.4E-29 170.0 9.1 168 4-202 7-188 (195)
10 1ek0_A Protein (GTP-binding pr 99.9 5.9E-25 2E-29 167.8 6.9 159 24-205 3-165 (170)
11 2efe_B Small GTP-binding prote 99.9 3.9E-25 1.3E-29 170.8 6.0 159 22-206 10-172 (181)
12 1ega_A Protein (GTP-binding pr 99.9 3.5E-24 1.2E-28 178.9 11.1 182 21-230 5-202 (301)
13 3oes_A GTPase rhebl1; small GT 99.9 5.1E-25 1.7E-29 173.5 5.4 166 11-203 11-181 (201)
14 2fg5_A RAB-22B, RAS-related pr 99.9 1.1E-24 3.6E-29 170.4 7.0 156 24-205 23-182 (192)
15 1z08_A RAS-related protein RAB 99.9 1.3E-24 4.4E-29 166.1 6.7 154 24-203 6-163 (170)
16 1kao_A RAP2A; GTP-binding prot 99.9 1.2E-24 4E-29 165.5 6.2 154 22-202 1-159 (167)
17 1c1y_A RAS-related protein RAP 99.9 1.3E-24 4.5E-29 165.4 6.5 154 22-202 1-160 (167)
18 1z0j_A RAB-22, RAS-related pro 99.9 1.4E-24 4.8E-29 165.8 6.6 155 23-203 5-163 (170)
19 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.6E-24 1.2E-28 164.8 8.4 153 24-202 7-167 (177)
20 1zun_B Sulfate adenylate trans 99.9 2.9E-24 9.8E-29 188.2 8.8 143 95-257 105-253 (434)
21 1zbd_A Rabphilin-3A; G protein 99.9 3.6E-24 1.2E-28 168.7 8.4 154 25-204 9-166 (203)
22 1z0f_A RAB14, member RAS oncog 99.9 2E-24 6.7E-29 166.4 6.6 153 24-202 15-171 (179)
23 2bme_A RAB4A, RAS-related prot 99.9 2.8E-24 9.7E-29 166.8 7.4 153 24-202 10-166 (186)
24 2ew1_A RAS-related protein RAB 99.9 3.7E-24 1.3E-28 168.7 7.8 153 24-202 26-182 (201)
25 1u8z_A RAS-related protein RAL 99.9 3.2E-24 1.1E-28 163.2 7.2 154 22-202 2-160 (168)
26 3pqc_A Probable GTP-binding pr 99.9 1E-23 3.5E-28 164.6 10.0 152 24-203 23-188 (195)
27 1z06_A RAS-related protein RAB 99.9 3.3E-24 1.1E-28 167.1 7.0 159 20-204 16-183 (189)
28 3reg_A RHO-like small GTPase; 99.9 2.1E-24 7.1E-29 168.9 5.9 157 22-203 21-182 (194)
29 3bc1_A RAS-related protein RAB 99.9 4.8E-24 1.6E-28 166.3 8.0 161 24-201 11-177 (195)
30 3p26_A Elongation factor 1 alp 99.9 3.1E-24 1.1E-28 190.3 7.6 151 95-258 112-277 (483)
31 2y8e_A RAB-protein 6, GH09086P 99.9 1.4E-24 4.7E-29 167.2 4.6 156 22-203 12-171 (179)
32 2c78_A Elongation factor TU-A; 99.9 1.5E-24 5.3E-29 188.4 5.3 204 24-258 11-231 (405)
33 2il1_A RAB12; G-protein, GDP, 99.9 2.2E-24 7.5E-29 168.7 5.6 153 24-202 26-183 (192)
34 1z2a_A RAS-related protein RAB 99.9 1.7E-24 5.8E-29 165.0 4.9 153 24-202 5-160 (168)
35 2gf9_A RAS-related protein RAB 99.9 2E-24 6.9E-29 168.3 5.2 152 24-201 22-177 (189)
36 3clv_A RAB5 protein, putative; 99.9 4.2E-24 1.4E-28 167.9 7.0 172 24-201 7-196 (208)
37 2hup_A RAS-related protein RAB 99.9 3.7E-24 1.3E-28 168.7 6.7 153 24-202 29-186 (201)
38 3tw8_B RAS-related protein RAB 99.9 1.7E-24 5.9E-29 166.9 4.6 152 24-201 9-163 (181)
39 3sjy_A Translation initiation 99.9 1E-23 3.6E-28 183.0 10.0 169 24-198 8-181 (403)
40 3t1o_A Gliding protein MGLA; G 99.9 1.1E-23 3.6E-28 164.8 9.0 155 24-201 14-184 (198)
41 2fn4_A P23, RAS-related protei 99.9 4.2E-24 1.4E-28 164.8 6.6 155 22-203 7-166 (181)
42 2g6b_A RAS-related protein RAB 99.9 4.1E-24 1.4E-28 164.9 6.5 153 24-202 10-167 (180)
43 1g16_A RAS-related protein SEC 99.9 1E-24 3.4E-29 166.6 3.0 150 25-201 4-157 (170)
44 1x3s_A RAS-related protein RAB 99.9 2.9E-24 9.9E-29 167.9 5.7 155 22-203 13-172 (195)
45 1ky3_A GTP-binding protein YPT 99.9 1.1E-23 3.6E-28 162.6 8.7 155 24-202 8-171 (182)
46 2p5s_A RAS and EF-hand domain 99.9 1.4E-24 4.7E-29 170.7 3.8 159 23-202 27-190 (199)
47 2oil_A CATX-8, RAS-related pro 99.9 3.8E-24 1.3E-28 167.2 6.3 152 24-201 25-180 (193)
48 3tkl_A RAS-related protein RAB 99.9 3.6E-24 1.2E-28 167.5 6.1 154 24-203 16-173 (196)
49 2wji_A Ferrous iron transport 99.9 3.7E-24 1.3E-28 163.3 5.9 151 22-203 1-159 (165)
50 3q3j_B RHO-related GTP-binding 99.9 3.6E-24 1.2E-28 170.4 6.0 162 20-203 23-197 (214)
51 2h57_A ADP-ribosylation factor 99.9 1.6E-23 5.4E-28 163.4 9.5 155 21-203 18-181 (190)
52 2hxs_A RAB-26, RAS-related pro 99.9 1.4E-24 4.7E-29 167.2 3.4 157 22-203 4-167 (178)
53 1zd9_A ADP-ribosylation factor 99.9 1.8E-23 6E-28 162.9 9.7 155 22-204 20-180 (188)
54 2h17_A ADP-ribosylation factor 99.9 1.3E-23 4.6E-28 162.6 8.9 154 21-203 18-177 (181)
55 3kkq_A RAS-related protein M-R 99.9 5E-24 1.7E-28 165.0 6.5 155 21-202 15-175 (183)
56 3t5g_A GTP-binding protein RHE 99.9 2.5E-24 8.5E-29 166.4 4.7 154 23-203 5-163 (181)
57 2a5j_A RAS-related protein RAB 99.9 1.8E-24 6.2E-29 168.9 3.9 154 23-202 20-177 (191)
58 1f60_A Elongation factor EEF1A 99.9 1.2E-24 4.2E-29 191.4 3.3 156 95-258 86-254 (458)
59 2ce2_X GTPase HRAS; signaling 99.9 8E-24 2.7E-28 160.6 7.2 153 22-202 1-158 (166)
60 1jny_A EF-1-alpha, elongation 99.9 3.2E-24 1.1E-28 187.9 5.5 145 95-258 85-243 (435)
61 1zo1_I IF2, translation initia 99.9 2.5E-24 8.6E-29 189.7 4.9 157 23-206 3-164 (501)
62 1zj6_A ADP-ribosylation factor 99.9 2E-23 6.9E-28 162.3 9.5 152 24-204 16-173 (187)
63 1upt_A ARL1, ADP-ribosylation 99.9 5.3E-23 1.8E-27 157.2 11.3 150 24-202 7-162 (171)
64 2bcg_Y Protein YP2, GTP-bindin 99.9 5.1E-24 1.7E-28 168.3 5.7 154 24-203 8-165 (206)
65 2bov_A RAla, RAS-related prote 99.9 9.7E-24 3.3E-28 166.3 7.3 157 20-203 10-171 (206)
66 1r8s_A ADP-ribosylation factor 99.9 5.4E-23 1.8E-27 156.2 11.0 149 26-203 2-156 (164)
67 4dhe_A Probable GTP-binding pr 99.9 7.1E-24 2.4E-28 169.4 6.4 173 4-203 13-205 (223)
68 2fu5_C RAS-related protein RAB 99.9 1.2E-24 4E-29 168.6 1.7 153 24-202 8-164 (183)
69 3bwd_D RAC-like GTP-binding pr 99.9 6.5E-24 2.2E-28 164.0 5.9 160 22-203 6-175 (182)
70 3cph_A RAS-related protein SEC 99.9 4E-24 1.4E-28 169.5 4.7 153 24-203 20-176 (213)
71 1f6b_A SAR1; gtpases, N-termin 99.9 2.1E-23 7.3E-28 163.9 8.8 154 22-204 23-194 (198)
72 2a9k_A RAS-related protein RAL 99.9 1.4E-23 4.7E-28 162.7 7.6 155 20-201 14-173 (187)
73 1vg8_A RAS-related protein RAB 99.9 6.5E-24 2.2E-28 167.6 5.7 153 24-203 8-169 (207)
74 3dz8_A RAS-related protein RAB 99.9 1.7E-24 5.7E-29 169.1 2.2 153 24-202 23-179 (191)
75 3i8s_A Ferrous iron transport 99.9 3.7E-24 1.3E-28 176.5 4.4 154 22-206 1-166 (274)
76 2nzj_A GTP-binding protein REM 99.9 1.3E-23 4.5E-28 161.2 7.1 153 23-202 3-162 (175)
77 3con_A GTPase NRAS; structural 99.9 1.5E-23 5E-28 163.4 7.3 155 19-201 16-175 (190)
78 1mh1_A RAC1; GTP-binding, GTPa 99.9 7.6E-24 2.6E-28 164.1 5.7 160 22-203 3-174 (186)
79 2dyk_A GTP-binding protein; GT 99.9 2.2E-23 7.5E-28 157.8 8.0 147 25-203 2-156 (161)
80 2erx_A GTP-binding protein DI- 99.9 1.4E-23 4.8E-28 160.4 7.0 153 25-204 4-162 (172)
81 3izy_P Translation initiation 99.9 2.7E-24 9.3E-29 191.0 3.0 158 23-203 3-162 (537)
82 1ksh_A ARF-like protein 2; sma 99.9 4.4E-23 1.5E-27 160.2 9.3 151 24-203 18-174 (186)
83 1s0u_A EIF-2-gamma, translatio 99.9 3.5E-23 1.2E-27 180.0 9.6 201 24-258 8-217 (408)
84 3ihw_A Centg3; RAS, centaurin, 99.9 2.6E-23 9E-28 161.5 7.9 153 18-202 14-173 (184)
85 3iby_A Ferrous iron transport 99.9 3.7E-24 1.3E-28 174.7 3.2 151 25-206 2-164 (256)
86 4dsu_A GTPase KRAS, isoform 2B 99.9 1.3E-23 4.4E-28 163.3 6.2 151 25-203 5-160 (189)
87 3c5c_A RAS-like protein 12; GD 99.9 1.1E-23 3.7E-28 164.1 5.7 154 21-202 18-179 (187)
88 1m2o_B GTP-binding protein SAR 99.9 5.5E-23 1.9E-27 160.5 9.7 152 23-203 22-186 (190)
89 2j0v_A RAC-like GTP-binding pr 99.9 1.7E-23 5.8E-28 166.0 6.5 160 23-204 8-175 (212)
90 2yc2_C IFT27, small RAB-relate 99.9 7.5E-24 2.6E-28 167.2 4.2 159 22-203 18-186 (208)
91 3q72_A GTP-binding protein RAD 99.9 2.4E-23 8.1E-28 158.5 6.9 150 25-202 3-157 (166)
92 2gco_A H9, RHO-related GTP-bin 99.9 1.6E-23 5.5E-28 164.9 6.1 157 24-202 25-193 (201)
93 3q85_A GTP-binding protein REM 99.9 9.9E-24 3.4E-28 161.1 4.5 152 25-202 3-160 (169)
94 4gzl_A RAS-related C3 botulinu 99.9 1.7E-23 5.7E-28 165.3 5.9 160 22-203 28-199 (204)
95 3cpj_B GTP-binding protein YPT 99.9 8.6E-24 2.9E-28 169.2 3.9 155 24-204 13-171 (223)
96 1d2e_A Elongation factor TU (E 99.9 2E-23 6.8E-28 180.8 6.5 195 25-258 4-214 (397)
97 2atx_A Small GTP binding prote 99.9 2.6E-23 8.7E-28 162.6 6.5 157 24-202 18-186 (194)
98 4djt_A GTP-binding nuclear pro 99.9 7.8E-24 2.7E-28 168.6 3.5 155 24-203 11-169 (218)
99 1kk1_A EIF2gamma; initiation o 99.9 3.8E-23 1.3E-27 179.9 8.1 173 24-200 10-191 (410)
100 2o52_A RAS-related protein RAB 99.9 5.5E-24 1.9E-28 167.5 2.5 153 24-202 25-181 (200)
101 1g7s_A Translation initiation 99.9 2.2E-23 7.5E-28 187.9 6.7 135 21-161 2-137 (594)
102 2f7s_A C25KG, RAS-related prot 99.9 1.1E-23 3.6E-28 167.8 4.0 162 24-201 25-191 (217)
103 3k53_A Ferrous iron transport 99.9 8.6E-24 3E-28 174.2 3.5 152 22-204 1-161 (271)
104 2fv8_A H6, RHO-related GTP-bin 99.9 1.5E-23 5.2E-28 165.8 4.7 160 22-203 23-194 (207)
105 3cbq_A GTP-binding protein REM 99.9 2.4E-23 8.2E-28 163.3 5.6 154 24-203 23-182 (195)
106 1r5b_A Eukaryotic peptide chai 99.9 9.3E-24 3.2E-28 186.3 3.6 146 95-257 122-283 (467)
107 2gf0_A GTP-binding protein DI- 99.9 2.5E-23 8.4E-28 163.2 5.6 154 24-205 8-167 (199)
108 1fzq_A ADP-ribosylation factor 99.9 1.5E-22 5.2E-27 156.7 9.9 152 24-204 16-173 (181)
109 3a1s_A Iron(II) transport prot 99.9 2.1E-23 7.2E-28 170.5 4.8 152 23-205 4-163 (258)
110 3izq_1 HBS1P, elongation facto 99.9 1.3E-23 4.6E-28 190.3 3.9 151 95-258 246-411 (611)
111 3th5_A RAS-related C3 botulinu 99.8 3.4E-24 1.2E-28 169.1 0.0 161 23-205 29-201 (204)
112 2j1l_A RHO-related GTP-binding 99.9 4.8E-23 1.6E-27 163.8 6.5 160 22-203 32-203 (214)
113 2hjg_A GTP-binding protein ENG 99.9 1E-22 3.4E-27 178.5 8.6 157 24-203 175-343 (436)
114 2x77_A ADP-ribosylation factor 99.9 1E-22 3.5E-27 158.6 7.5 150 24-202 22-177 (189)
115 2iwr_A Centaurin gamma 1; ANK 99.9 6.7E-23 2.3E-27 157.9 6.2 149 22-202 5-162 (178)
116 2q3h_A RAS homolog gene family 99.9 4.4E-23 1.5E-27 162.2 5.3 159 22-202 18-188 (201)
117 3l0i_B RAS-related protein RAB 99.9 1.2E-24 4E-29 171.1 -3.8 158 24-207 33-194 (199)
118 2atv_A RERG, RAS-like estrogen 99.9 9.4E-23 3.2E-27 159.8 7.0 151 23-201 27-183 (196)
119 3gj0_A GTP-binding nuclear pro 99.9 7E-24 2.4E-28 169.4 0.3 155 21-203 12-169 (221)
120 1moz_A ARL1, ADP-ribosylation 99.9 8.2E-23 2.8E-27 158.1 6.2 149 24-201 18-172 (183)
121 1m7b_A RND3/RHOE small GTP-bin 99.9 6.6E-23 2.2E-27 159.1 5.7 157 24-202 7-176 (184)
122 2b6h_A ADP-ribosylation factor 99.9 2E-22 6.9E-27 157.5 8.2 152 23-203 28-185 (192)
123 3b1v_A Ferrous iron uptake tra 99.9 8.2E-23 2.8E-27 168.0 6.2 149 25-205 4-160 (272)
124 2qu8_A Putative nucleolar GTP- 99.9 5.7E-22 2E-26 159.1 10.6 156 23-203 28-199 (228)
125 2elf_A Protein translation elo 99.9 2.8E-22 9.7E-27 171.5 9.0 140 21-198 20-169 (370)
126 1gwn_A RHO-related GTP-binding 99.9 1.1E-22 3.6E-27 160.9 5.6 157 24-202 28-197 (205)
127 2wjg_A FEOB, ferrous iron tran 99.9 5.4E-23 1.9E-27 159.8 3.6 152 21-203 4-163 (188)
128 3mca_A HBS1, elongation factor 99.9 4.6E-24 1.6E-28 192.8 -3.0 146 95-258 256-415 (592)
129 2fh5_B SR-beta, signal recogni 99.9 8E-22 2.8E-26 156.5 9.8 114 24-160 7-129 (214)
130 4dcu_A GTP-binding protein ENG 99.9 7.6E-22 2.6E-26 173.9 10.5 159 23-204 194-364 (456)
131 3llu_A RAS-related GTP-binding 99.9 4E-22 1.4E-26 156.3 7.4 160 22-203 18-191 (196)
132 2aka_B Dynamin-1; fusion prote 99.9 1.8E-21 6.2E-26 162.3 11.0 131 95-230 126-280 (299)
133 3avx_A Elongation factor TS, e 99.9 4.7E-22 1.6E-26 187.1 7.7 196 22-258 294-505 (1289)
134 1mky_A Probable GTP-binding pr 99.9 2E-21 6.7E-26 170.5 10.9 149 25-203 2-160 (439)
135 2gj8_A MNME, tRNA modification 99.8 7.7E-22 2.6E-26 151.6 6.3 145 25-203 5-160 (172)
136 2g3y_A GTP-binding protein GEM 99.8 1.3E-21 4.5E-26 155.1 7.6 153 24-203 37-197 (211)
137 2hjg_A GTP-binding protein ENG 99.8 1E-21 3.5E-26 172.2 7.6 149 24-204 3-160 (436)
138 2ywe_A GTP-binding protein LEP 99.8 2E-21 7E-26 174.7 9.1 106 96-205 75-180 (600)
139 3tr5_A RF-3, peptide chain rel 99.8 5E-22 1.7E-26 177.0 4.1 66 95-160 83-148 (528)
140 1nrj_B SR-beta, signal recogni 99.8 8.1E-21 2.8E-25 151.1 10.3 147 23-196 11-171 (218)
141 3qq5_A Small GTP-binding prote 99.8 1.6E-21 5.6E-26 169.0 6.7 150 24-203 34-190 (423)
142 3cb4_D GTP-binding protein LEP 99.8 2.7E-21 9.1E-26 174.2 8.3 106 96-205 73-178 (599)
143 1xzp_A Probable tRNA modificat 99.8 2.6E-21 9E-26 170.5 8.1 149 25-205 244-401 (482)
144 3gee_A MNME, tRNA modification 99.8 2.2E-21 7.5E-26 170.8 7.1 149 25-205 234-394 (476)
145 3dpu_A RAB family protein; roc 99.8 2.2E-21 7.4E-26 174.2 7.3 164 21-204 38-203 (535)
146 3o47_A ADP-ribosylation factor 99.8 2.6E-21 9E-26 163.4 7.3 152 23-203 164-321 (329)
147 4dcu_A GTP-binding protein ENG 99.8 3.1E-21 1.1E-25 170.0 7.3 155 20-205 19-181 (456)
148 3t5d_A Septin-7; GTP-binding p 99.8 1.2E-20 4.2E-25 155.5 10.4 163 25-204 9-199 (274)
149 3lvq_E ARF-GAP with SH3 domain 99.8 4.8E-21 1.6E-25 170.7 8.5 155 22-205 320-480 (497)
150 2cxx_A Probable GTP-binding pr 99.8 7.6E-21 2.6E-25 147.7 7.7 148 25-203 2-178 (190)
151 3geh_A MNME, tRNA modification 99.8 5.4E-21 1.9E-25 167.8 6.4 147 25-204 225-379 (462)
152 2zej_A Dardarin, leucine-rich 99.8 5.7E-21 1.9E-25 148.2 4.7 156 25-201 3-170 (184)
153 2wkq_A NPH1-1, RAS-related C3 99.8 6.4E-21 2.2E-25 161.0 5.3 156 25-202 156-323 (332)
154 1mky_A Probable GTP-binding pr 99.8 3.5E-20 1.2E-24 162.5 9.5 158 24-204 180-350 (439)
155 2xtp_A GTPase IMAP family memb 99.8 3.3E-20 1.1E-24 151.7 8.7 158 22-203 20-202 (260)
156 2cjw_A GTP-binding protein GEM 99.8 7.6E-21 2.6E-25 148.6 4.6 153 24-203 6-166 (192)
157 3r7w_A Gtpase1, GTP-binding pr 99.8 2.4E-20 8.3E-25 156.1 7.8 149 25-201 4-173 (307)
158 3vqt_A RF-3, peptide chain rel 99.8 2.1E-20 7.1E-25 167.4 7.2 116 23-161 30-167 (548)
159 2h5e_A Peptide chain release f 99.8 1.1E-19 3.7E-24 162.2 11.2 168 24-201 13-187 (529)
160 3c5h_A Glucocorticoid receptor 99.8 7.1E-20 2.4E-24 149.4 8.1 79 117-202 162-248 (255)
161 3lxw_A GTPase IMAP family memb 99.8 6.2E-20 2.1E-24 149.0 6.9 154 24-203 21-202 (247)
162 3j25_A Tetracycline resistance 99.8 3.9E-20 1.3E-24 168.7 6.0 132 24-161 2-134 (638)
163 2f9l_A RAB11B, member RAS onco 99.8 4.7E-20 1.6E-24 144.8 4.6 153 25-203 6-162 (199)
164 3r7w_B Gtpase2, GTP-binding pr 99.8 1.5E-19 5.3E-24 150.5 7.3 151 26-201 1-166 (331)
165 1lnz_A SPO0B-associated GTP-bi 99.8 1.4E-19 4.8E-24 153.0 6.8 150 25-203 159-324 (342)
166 2xex_A Elongation factor G; GT 99.8 5.2E-18 1.8E-22 156.0 15.2 175 24-211 10-186 (693)
167 2x2e_A Dynamin-1; nitration, h 99.8 3.9E-19 1.3E-23 151.6 7.3 131 95-230 131-285 (353)
168 1jwy_B Dynamin A GTPase domain 99.8 2.4E-18 8.1E-23 144.5 11.9 103 95-202 132-255 (315)
169 2e87_A Hypothetical protein PH 99.8 2.4E-18 8.2E-23 147.0 11.9 151 23-203 166-330 (357)
170 3lxx_A GTPase IMAP family memb 99.8 6.8E-19 2.3E-23 142.2 7.6 118 21-160 26-159 (239)
171 1oix_A RAS-related protein RAB 99.8 4E-19 1.4E-23 138.6 5.0 151 25-201 30-184 (191)
172 3zvr_A Dynamin-1; hydrolase, D 99.8 4.8E-18 1.6E-22 155.7 12.3 140 95-239 151-315 (772)
173 2dy1_A Elongation factor G; tr 99.7 1.8E-18 6E-23 158.5 8.6 131 24-159 9-139 (665)
174 2qpt_A EH domain-containing pr 99.7 1.3E-17 4.4E-22 149.5 13.9 66 95-160 155-232 (550)
175 2rdo_7 EF-G, elongation factor 99.7 2.7E-18 9.3E-23 158.0 9.1 67 95-161 83-149 (704)
176 1dar_A EF-G, elongation factor 99.7 2.8E-17 9.5E-22 151.1 15.6 158 23-203 11-181 (691)
177 1wxq_A GTP-binding protein; st 99.7 3.4E-18 1.2E-22 147.4 8.7 62 145-213 213-278 (397)
178 3def_A T7I23.11 protein; chlor 99.7 1.6E-17 5.5E-22 136.0 10.9 116 22-159 34-164 (262)
179 2qtf_A Protein HFLX, GTP-bindi 99.7 7.5E-18 2.6E-22 143.8 8.8 149 25-201 180-346 (364)
180 1n0u_A EF-2, elongation factor 99.7 1E-17 3.6E-22 156.9 10.4 65 96-160 100-164 (842)
181 4fn5_A EF-G 1, elongation fact 99.7 1.5E-17 5E-22 153.6 10.7 67 95-161 86-152 (709)
182 2j69_A Bacterial dynamin-like 99.7 1.3E-17 4.4E-22 153.4 10.3 66 95-160 175-244 (695)
183 3t34_A Dynamin-related protein 99.7 2E-17 6.7E-22 141.5 10.5 100 95-199 137-251 (360)
184 1pui_A ENGB, probable GTP-bind 99.7 1.3E-17 4.3E-22 131.8 8.4 151 24-201 26-191 (210)
185 2ged_A SR-beta, signal recogni 99.7 1.2E-17 4.1E-22 130.0 7.5 112 23-161 47-171 (193)
186 2qag_A Septin-2, protein NEDD5 99.7 9.4E-18 3.2E-22 143.3 7.3 157 25-199 38-223 (361)
187 1h65_A Chloroplast outer envel 99.7 5.5E-16 1.9E-20 127.4 13.0 115 24-160 39-168 (270)
188 3p32_A Probable GTPase RV1496/ 99.6 1.9E-17 6.5E-22 141.2 0.9 102 95-206 173-281 (355)
189 2qag_C Septin-7; cell cycle, c 99.6 2.6E-15 9E-20 129.8 10.6 165 25-206 32-224 (418)
190 2www_A Methylmalonic aciduria 99.6 1.3E-16 4.5E-21 135.5 2.4 129 95-230 168-306 (349)
191 2qnr_A Septin-2, protein NEDD5 99.6 1.4E-15 4.6E-20 126.8 8.4 160 25-202 19-207 (301)
192 2wsm_A Hydrogenase expression/ 99.6 8.6E-17 2.9E-21 128.0 0.8 170 23-203 29-208 (221)
193 1udx_A The GTP-binding protein 99.6 3.8E-15 1.3E-19 128.8 8.1 149 25-203 158-319 (416)
194 2p67_A LAO/AO transport system 99.5 8.2E-16 2.8E-20 130.4 0.7 101 95-205 150-257 (341)
195 1yrb_A ATP(GTP)binding protein 99.5 1.4E-14 4.9E-19 118.1 7.2 103 95-201 110-249 (262)
196 1jal_A YCHF protein; nucleotid 99.5 1E-13 3.5E-18 117.4 10.4 97 25-129 3-108 (363)
197 2dby_A GTP-binding protein; GD 99.5 6.7E-14 2.3E-18 119.2 6.4 100 26-129 3-111 (368)
198 1cip_A Protein (guanine nucleo 99.4 1.9E-14 6.6E-19 122.0 2.5 107 95-201 194-336 (353)
199 4a9a_A Ribosome-interacting GT 99.4 1.3E-13 4.5E-18 117.4 7.1 110 25-159 73-195 (376)
200 2hf9_A Probable hydrogenase ni 99.4 6.8E-14 2.3E-18 111.5 2.2 168 23-201 37-216 (226)
201 3ohm_A Guanine nucleotide-bind 99.4 1.2E-13 4.2E-18 115.5 3.0 106 95-200 168-309 (327)
202 2qm8_A GTPase/ATPase; G protei 99.4 1.7E-13 5.7E-18 115.8 2.7 102 95-205 149-257 (337)
203 1u0l_A Probable GTPase ENGC; p 99.3 3.8E-13 1.3E-17 112.0 2.8 106 96-208 65-172 (301)
204 3h2y_A GTPase family protein; 99.3 1.8E-13 6.1E-18 117.0 0.7 151 25-200 161-321 (368)
205 4fid_A G protein alpha subunit 99.3 1.9E-12 6.7E-17 108.7 6.4 66 95-160 162-242 (340)
206 3ec1_A YQEH GTPase; atnos1, at 99.3 1.4E-13 4.7E-18 117.8 -1.6 150 25-200 163-322 (369)
207 2qag_B Septin-6, protein NEDD5 99.3 8.8E-12 3E-16 107.5 9.2 144 26-190 44-217 (427)
208 3sop_A Neuronal-specific septi 99.2 6.8E-11 2.3E-15 96.7 11.3 123 25-160 3-154 (270)
209 2j37_W Signal recognition part 99.2 2.8E-11 9.5E-16 106.9 6.8 104 95-206 185-310 (504)
210 2ohf_A Protein OLA1, GTP-bindi 99.0 2E-10 6.8E-15 98.2 6.2 97 25-129 23-128 (396)
211 1zcb_A G alpha I/13; GTP-bindi 99.0 3.9E-11 1.3E-15 102.0 1.2 106 95-200 202-344 (362)
212 1tq4_A IIGP1, interferon-induc 99.0 1.2E-09 4E-14 94.3 9.5 158 25-203 70-247 (413)
213 2v3c_C SRP54, signal recogniti 99.0 6.6E-10 2.2E-14 96.6 8.0 105 94-206 181-308 (432)
214 3l82_B F-box only protein 4; T 99.0 2.8E-10 9.5E-15 88.2 3.8 109 96-207 98-221 (227)
215 2xtz_A Guanine nucleotide-bind 99.0 8.9E-11 3E-15 99.5 1.0 65 95-159 184-263 (354)
216 1azs_C GS-alpha; complex (lyas 98.9 3.3E-10 1.1E-14 97.2 3.4 65 95-159 218-297 (402)
217 3dm5_A SRP54, signal recogniti 98.9 3.8E-09 1.3E-13 91.5 8.4 93 94-199 183-281 (443)
218 2yv5_A YJEQ protein; hydrolase 98.9 1.1E-09 3.8E-14 91.0 3.7 100 104-207 66-167 (302)
219 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 6.9E-09 2.4E-13 88.9 7.2 97 25-129 21-127 (392)
220 3l2o_B F-box only protein 4; s 98.7 4.6E-09 1.6E-13 85.3 3.3 99 102-203 195-302 (312)
221 3kl4_A SRP54, signal recogniti 98.7 3.1E-08 1.1E-12 85.8 7.1 92 94-198 180-279 (433)
222 1f5n_A Interferon-induced guan 98.6 4E-08 1.4E-12 88.2 6.5 26 24-49 38-63 (592)
223 1j8m_F SRP54, signal recogniti 98.6 1.2E-07 4E-12 78.5 8.8 62 95-159 182-252 (297)
224 1puj_A YLQF, conserved hypothe 98.6 4E-08 1.4E-12 80.7 4.9 95 98-201 3-98 (282)
225 3ec1_A YQEH GTPase; atnos1, at 98.5 1.8E-08 6.1E-13 86.1 2.0 103 96-203 51-156 (369)
226 1puj_A YLQF, conserved hypothe 98.5 8.2E-08 2.8E-12 78.9 5.2 26 24-49 120-145 (282)
227 3szr_A Interferon-induced GTP- 98.5 1.9E-07 6.7E-12 84.7 7.5 68 94-161 147-229 (608)
228 3h2y_A GTPase family protein; 98.4 3.5E-08 1.2E-12 84.2 0.8 101 96-203 49-154 (368)
229 3cnl_A YLQF, putative uncharac 98.4 2.1E-07 7.1E-12 75.6 4.6 24 26-49 101-124 (262)
230 3cnl_A YLQF, putative uncharac 98.2 2.2E-07 7.6E-12 75.5 1.1 93 101-205 4-97 (262)
231 2xxa_A Signal recognition part 98.2 3.3E-06 1.1E-10 73.4 7.8 62 95-159 185-253 (433)
232 1t9h_A YLOQ, probable GTPase E 98.1 2.3E-06 8E-11 70.8 4.5 87 113-202 82-170 (307)
233 3e70_C DPA, signal recognition 98.1 2.9E-06 9.9E-11 71.0 4.6 91 95-198 213-309 (328)
234 1zu4_A FTSY; GTPase, signal re 98.0 1E-05 3.4E-10 67.6 7.4 24 24-47 105-128 (320)
235 2yhs_A FTSY, cell division pro 98.0 6.3E-06 2.2E-10 72.2 5.9 24 24-47 293-316 (503)
236 4dzz_A Plasmid partitioning pr 98.0 2E-05 6.7E-10 61.1 8.2 62 95-159 77-143 (206)
237 2ffh_A Protein (FFH); SRP54, s 98.0 1.2E-05 4.1E-10 69.5 7.5 62 95-159 182-250 (425)
238 3q5d_A Atlastin-1; G protein, 97.9 2.3E-05 7.8E-10 68.1 7.7 27 21-47 64-90 (447)
239 1vma_A Cell division protein F 97.9 1.8E-05 6E-10 65.6 6.5 25 24-48 104-128 (306)
240 2px0_A Flagellar biosynthesis 97.9 3.1E-05 1.1E-09 63.9 7.2 25 24-48 105-129 (296)
241 1rj9_A FTSY, signal recognitio 97.8 3.3E-05 1.1E-09 64.0 6.9 24 24-47 102-125 (304)
242 1ls1_A Signal recognition part 97.8 4.7E-05 1.6E-09 62.8 6.6 63 94-159 181-250 (295)
243 3cwq_A Para family chromosome 97.6 8.5E-05 2.9E-09 58.0 5.7 63 95-159 69-133 (209)
244 2rcn_A Probable GTPase ENGC; Y 97.6 0.00016 5.5E-09 61.0 7.3 84 114-201 127-211 (358)
245 3k9g_A PF-32 protein; ssgcid, 97.5 0.00067 2.3E-08 54.7 9.8 62 95-158 146-209 (267)
246 1bif_A 6-phosphofructo-2-kinas 97.4 6.9E-05 2.4E-09 65.9 3.3 108 24-153 39-156 (469)
247 3kjh_A CO dehydrogenase/acetyl 97.3 6.1E-05 2.1E-09 60.1 1.9 63 94-158 132-195 (254)
248 3end_A Light-independent proto 97.3 0.0006 2E-08 56.3 7.6 64 94-158 157-225 (307)
249 1t9h_A YLOQ, probable GTPase E 97.3 8.2E-05 2.8E-09 61.5 1.8 24 25-48 174-197 (307)
250 3ney_A 55 kDa erythrocyte memb 97.3 0.00014 4.9E-09 56.1 3.0 30 18-47 13-42 (197)
251 1ye8_A Protein THEP1, hypothet 97.2 0.00012 4.2E-09 55.6 2.4 23 26-48 2-24 (178)
252 1ex7_A Guanylate kinase; subst 97.2 0.00026 9E-09 54.1 4.0 37 27-68 4-40 (186)
253 2yv5_A YJEQ protein; hydrolase 97.2 0.00041 1.4E-08 57.3 5.4 21 25-45 166-186 (302)
254 1kgd_A CASK, peripheral plasma 97.2 0.00019 6.6E-09 54.5 2.9 23 25-47 6-28 (180)
255 1u0l_A Probable GTPase ENGC; p 97.2 0.00038 1.3E-08 57.5 4.8 24 25-48 170-193 (301)
256 1lvg_A Guanylate kinase, GMP k 97.1 0.0002 6.7E-09 55.4 2.4 22 26-47 6-27 (198)
257 3a00_A Guanylate kinase, GMP k 97.0 0.00025 8.5E-09 54.1 2.2 23 26-48 3-25 (186)
258 3tr0_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 54.1 2.6 22 26-47 9-30 (205)
259 1znw_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 54.5 2.6 23 26-48 22-44 (207)
260 1zp6_A Hypothetical protein AT 96.9 0.00042 1.4E-08 52.8 3.0 23 25-47 10-32 (191)
261 1z6g_A Guanylate kinase; struc 96.9 0.00036 1.2E-08 54.8 2.4 23 26-48 25-47 (218)
262 3c8u_A Fructokinase; YP_612366 96.9 0.00041 1.4E-08 53.9 2.7 23 25-47 23-45 (208)
263 1s96_A Guanylate kinase, GMP k 96.9 0.0004 1.4E-08 54.6 2.4 23 26-48 18-40 (219)
264 3tif_A Uncharacterized ABC tra 96.9 0.00044 1.5E-08 55.0 2.7 23 26-48 33-55 (235)
265 1htw_A HI0065; nucleotide-bind 96.9 0.00048 1.6E-08 51.2 2.6 23 26-48 35-57 (158)
266 2pcj_A ABC transporter, lipopr 96.9 0.00051 1.7E-08 54.2 2.9 23 26-48 32-54 (224)
267 2rcn_A Probable GTPase ENGC; Y 96.9 0.00049 1.7E-08 58.1 2.8 25 25-49 216-240 (358)
268 4gp7_A Metallophosphoesterase; 96.8 0.0005 1.7E-08 51.7 2.4 20 26-45 11-30 (171)
269 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.014 4.7E-07 48.7 11.3 24 25-48 172-195 (330)
270 2onk_A Molybdate/tungstate ABC 96.8 0.00065 2.2E-08 54.2 2.8 24 25-48 25-48 (240)
271 1qhx_A CPT, protein (chloramph 96.8 0.00073 2.5E-08 50.8 2.9 24 24-47 3-26 (178)
272 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0044 1.5E-07 53.7 8.0 23 23-45 66-88 (457)
273 3asz_A Uridine kinase; cytidin 96.7 0.00069 2.4E-08 52.6 2.8 23 25-47 7-29 (211)
274 3gfo_A Cobalt import ATP-bindi 96.7 0.00068 2.3E-08 55.2 2.7 23 26-48 36-58 (275)
275 1b0u_A Histidine permease; ABC 96.7 0.00068 2.3E-08 54.8 2.7 23 26-48 34-56 (262)
276 3tau_A Guanylate kinase, GMP k 96.7 0.00065 2.2E-08 52.8 2.5 24 25-48 9-32 (208)
277 2j41_A Guanylate kinase; GMP, 96.7 0.00074 2.5E-08 52.0 2.8 24 25-48 7-30 (207)
278 2cbz_A Multidrug resistance-as 96.7 0.0007 2.4E-08 53.9 2.7 23 26-48 33-55 (237)
279 1sgw_A Putative ABC transporte 96.7 0.00067 2.3E-08 53.1 2.5 23 26-48 37-59 (214)
280 4g1u_C Hemin import ATP-bindin 96.7 0.0007 2.4E-08 54.8 2.7 23 26-48 39-61 (266)
281 1g6h_A High-affinity branched- 96.7 0.00071 2.4E-08 54.5 2.7 23 26-48 35-57 (257)
282 3b85_A Phosphate starvation-in 96.7 0.0007 2.4E-08 52.8 2.5 22 26-47 24-45 (208)
283 2ff7_A Alpha-hemolysin translo 96.7 0.00072 2.5E-08 54.1 2.7 23 26-48 37-59 (247)
284 1knq_A Gluconate kinase; ALFA/ 96.7 0.00086 2.9E-08 50.4 3.0 23 24-46 8-30 (175)
285 2pze_A Cystic fibrosis transme 96.7 0.00075 2.6E-08 53.4 2.7 23 26-48 36-58 (229)
286 1mv5_A LMRA, multidrug resista 96.7 0.00075 2.6E-08 53.9 2.7 23 26-48 30-52 (243)
287 1kag_A SKI, shikimate kinase I 96.7 0.00066 2.3E-08 50.8 2.3 22 26-47 6-27 (173)
288 2olj_A Amino acid ABC transpor 96.7 0.00078 2.7E-08 54.5 2.7 23 26-48 52-74 (263)
289 1kht_A Adenylate kinase; phosp 96.7 0.00083 2.8E-08 51.0 2.7 23 24-46 3-25 (192)
290 1y63_A LMAJ004144AAA protein; 96.7 0.00094 3.2E-08 50.8 3.0 26 22-47 8-33 (184)
291 1vpl_A ABC transporter, ATP-bi 96.7 0.00082 2.8E-08 54.1 2.7 23 26-48 43-65 (256)
292 1tev_A UMP-CMP kinase; ploop, 96.7 0.00087 3E-08 51.0 2.8 25 22-46 1-25 (196)
293 1ji0_A ABC transporter; ATP bi 96.7 0.00081 2.8E-08 53.6 2.7 23 26-48 34-56 (240)
294 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00085 2.9E-08 53.8 2.8 22 26-47 31-52 (250)
295 2qi9_C Vitamin B12 import ATP- 96.6 0.00086 2.9E-08 53.8 2.7 23 26-48 28-50 (249)
296 2bdt_A BH3686; alpha-beta prot 96.6 0.00087 3E-08 51.0 2.6 21 26-46 4-24 (189)
297 2zu0_C Probable ATP-dependent 96.6 0.00093 3.2E-08 54.1 2.8 22 26-47 48-69 (267)
298 2ghi_A Transport protein; mult 96.6 0.0009 3.1E-08 54.0 2.7 23 26-48 48-70 (260)
299 2bbw_A Adenylate kinase 4, AK4 96.6 0.001 3.5E-08 53.0 3.0 22 24-45 27-48 (246)
300 2eyu_A Twitching motility prot 96.6 0.00091 3.1E-08 54.0 2.7 23 25-47 26-48 (261)
301 2ihy_A ABC transporter, ATP-bi 96.6 0.00094 3.2E-08 54.5 2.7 23 26-48 49-71 (279)
302 2i3b_A HCR-ntpase, human cance 96.6 0.0008 2.7E-08 51.6 2.2 23 26-48 3-25 (189)
303 4eun_A Thermoresistant glucoki 96.6 0.00096 3.3E-08 51.4 2.6 23 25-47 30-52 (200)
304 2ixe_A Antigen peptide transpo 96.6 0.00095 3.2E-08 54.2 2.7 23 26-48 47-69 (271)
305 2nq2_C Hypothetical ABC transp 96.6 0.001 3.4E-08 53.5 2.7 23 26-48 33-55 (253)
306 2v9p_A Replication protein E1; 96.6 0.00097 3.3E-08 55.0 2.6 23 26-48 128-150 (305)
307 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 49.5 2.7 20 25-44 2-21 (179)
308 1np6_A Molybdopterin-guanine d 96.6 0.0011 3.7E-08 50.1 2.7 23 25-47 7-29 (174)
309 2yz2_A Putative ABC transporte 96.6 0.001 3.5E-08 53.8 2.7 23 26-48 35-57 (266)
310 2qor_A Guanylate kinase; phosp 96.6 0.00097 3.3E-08 51.6 2.4 23 25-47 13-35 (204)
311 2plr_A DTMP kinase, probable t 96.6 0.0012 4E-08 51.1 2.9 25 23-47 3-27 (213)
312 3lnc_A Guanylate kinase, GMP k 96.5 0.00083 2.8E-08 53.0 2.0 23 25-47 28-51 (231)
313 3zvl_A Bifunctional polynucleo 96.5 0.005 1.7E-07 53.1 7.0 23 24-46 258-280 (416)
314 3kb2_A SPBC2 prophage-derived 96.5 0.0013 4.3E-08 49.1 2.7 22 26-47 3-24 (173)
315 2pjz_A Hypothetical protein ST 96.5 0.0013 4.4E-08 53.2 2.7 23 26-48 32-54 (263)
316 1cke_A CK, MSSA, protein (cyti 96.5 0.0013 4.4E-08 51.5 2.7 23 25-47 6-28 (227)
317 2b8t_A Thymidine kinase; deoxy 96.5 0.0061 2.1E-07 47.9 6.5 42 119-160 89-130 (223)
318 1ly1_A Polynucleotide kinase; 96.5 0.0015 5E-08 49.1 2.8 22 25-46 3-24 (181)
319 3uie_A Adenylyl-sulfate kinase 96.4 0.0014 4.6E-08 50.6 2.6 23 25-47 26-48 (200)
320 2f1r_A Molybdopterin-guanine d 96.4 0.00067 2.3E-08 51.1 0.8 23 25-47 3-25 (171)
321 3aez_A Pantothenate kinase; tr 96.4 0.0013 4.5E-08 54.5 2.6 23 25-47 91-113 (312)
322 2if2_A Dephospho-COA kinase; a 96.4 0.0015 5.2E-08 50.3 2.9 21 26-46 3-23 (204)
323 2bbs_A Cystic fibrosis transme 96.4 0.0015 5E-08 53.6 2.9 23 26-48 66-88 (290)
324 3ec2_A DNA replication protein 96.4 0.0018 6E-08 48.9 3.0 24 25-48 39-62 (180)
325 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0016 5.5E-08 55.0 2.9 23 26-48 32-54 (359)
326 1jjv_A Dephospho-COA kinase; P 96.4 0.0017 5.8E-08 50.1 2.7 21 26-46 4-24 (206)
327 4a74_A DNA repair and recombin 96.4 0.0017 5.8E-08 50.8 2.8 22 26-47 27-48 (231)
328 3iij_A Coilin-interacting nucl 96.4 0.0016 5.5E-08 49.1 2.5 25 22-46 9-33 (180)
329 3nh6_A ATP-binding cassette SU 96.4 0.00097 3.3E-08 55.1 1.4 22 26-47 82-103 (306)
330 3t61_A Gluconokinase; PSI-biol 96.4 0.0014 4.9E-08 50.4 2.3 23 25-47 19-41 (202)
331 1nij_A Hypothetical protein YJ 96.3 0.0017 5.9E-08 53.9 2.9 25 24-48 4-28 (318)
332 2jeo_A Uridine-cytidine kinase 96.3 0.0016 5.6E-08 51.8 2.6 23 25-47 26-48 (245)
333 3tui_C Methionine import ATP-b 96.3 0.0017 5.9E-08 54.8 2.8 23 26-48 56-78 (366)
334 2rhm_A Putative kinase; P-loop 96.3 0.0021 7.3E-08 48.8 3.0 23 24-46 5-27 (193)
335 3cm0_A Adenylate kinase; ATP-b 96.3 0.002 6.9E-08 48.7 2.8 22 25-46 5-26 (186)
336 2vli_A Antibiotic resistance p 96.3 0.0015 5.2E-08 49.2 2.0 24 23-46 4-27 (183)
337 3tqc_A Pantothenate kinase; bi 96.3 0.0018 6E-08 53.9 2.5 25 23-47 91-115 (321)
338 2ehv_A Hypothetical protein PH 96.3 0.002 6.8E-08 51.1 2.8 22 25-46 31-52 (251)
339 1z47_A CYSA, putative ABC-tran 96.3 0.0019 6.6E-08 54.4 2.8 23 26-48 43-65 (355)
340 3fb4_A Adenylate kinase; psych 96.3 0.0018 6.1E-08 50.4 2.4 20 27-46 3-22 (216)
341 3vaa_A Shikimate kinase, SK; s 96.3 0.002 6.9E-08 49.5 2.7 21 26-46 27-47 (199)
342 2wwf_A Thymidilate kinase, put 96.3 0.003 1E-07 48.8 3.7 24 23-46 9-32 (212)
343 3jvv_A Twitching mobility prot 96.3 0.0018 6.3E-08 54.6 2.6 23 25-47 124-146 (356)
344 2gza_A Type IV secretion syste 96.3 0.0018 6.3E-08 54.8 2.6 24 25-48 176-199 (361)
345 2kjq_A DNAA-related protein; s 96.3 0.0018 6.3E-08 47.5 2.3 25 24-48 36-60 (149)
346 3rlf_A Maltose/maltodextrin im 96.3 0.002 7E-08 54.7 2.8 23 26-48 31-53 (381)
347 2ph1_A Nucleotide-binding prot 96.2 0.015 5.2E-07 46.6 7.9 65 94-158 129-194 (262)
348 2v54_A DTMP kinase, thymidylat 96.2 0.0024 8.2E-08 49.0 3.0 24 24-47 4-27 (204)
349 1nks_A Adenylate kinase; therm 96.2 0.0023 8E-08 48.5 2.9 22 26-47 3-24 (194)
350 2yyz_A Sugar ABC transporter, 96.2 0.0021 7.1E-08 54.3 2.8 23 26-48 31-53 (359)
351 2it1_A 362AA long hypothetical 96.2 0.0022 7.4E-08 54.3 2.8 23 26-48 31-53 (362)
352 2qt1_A Nicotinamide riboside k 96.2 0.0025 8.4E-08 49.3 2.9 23 25-47 22-44 (207)
353 3dl0_A Adenylate kinase; phosp 96.2 0.002 6.8E-08 50.1 2.4 20 27-46 3-22 (216)
354 2jaq_A Deoxyguanosine kinase; 96.2 0.0022 7.6E-08 49.1 2.7 21 26-46 2-22 (205)
355 2yvu_A Probable adenylyl-sulfa 96.2 0.0027 9.3E-08 48.1 3.1 26 22-47 11-36 (186)
356 1uf9_A TT1252 protein; P-loop, 96.2 0.0027 9.3E-08 48.6 3.1 25 23-47 7-31 (203)
357 2c95_A Adenylate kinase 1; tra 96.2 0.0028 9.5E-08 48.3 3.1 23 24-46 9-31 (196)
358 1g29_1 MALK, maltose transport 96.2 0.0023 7.8E-08 54.4 2.8 23 26-48 31-53 (372)
359 1sq5_A Pantothenate kinase; P- 96.2 0.0024 8.2E-08 52.8 2.8 23 25-47 81-103 (308)
360 1v43_A Sugar-binding transport 96.2 0.0024 8.1E-08 54.2 2.8 23 26-48 39-61 (372)
361 1xjc_A MOBB protein homolog; s 96.2 0.0026 8.9E-08 47.7 2.7 23 25-47 5-27 (169)
362 3trf_A Shikimate kinase, SK; a 96.2 0.0025 8.6E-08 48.2 2.7 22 25-46 6-27 (185)
363 1rz3_A Hypothetical protein rb 96.1 0.0029 9.8E-08 48.8 3.0 22 25-46 23-44 (201)
364 1gvn_B Zeta; postsegregational 96.1 0.003 1E-07 51.7 3.2 27 21-47 30-56 (287)
365 1lw7_A Transcriptional regulat 96.1 0.0019 6.6E-08 54.7 2.1 24 25-48 171-194 (365)
366 3kta_A Chromosome segregation 96.1 0.0033 1.1E-07 47.4 3.0 25 23-47 25-49 (182)
367 1nn5_A Similar to deoxythymidy 96.1 0.0033 1.1E-07 48.7 3.1 23 24-46 9-31 (215)
368 3gd7_A Fusion complex of cysti 96.1 0.0029 1E-07 54.0 2.9 23 26-48 49-71 (390)
369 2ewv_A Twitching motility prot 96.1 0.0026 8.9E-08 54.1 2.6 23 25-47 137-159 (372)
370 2p5t_B PEZT; postsegregational 96.1 0.003 1E-07 50.6 2.9 26 22-47 30-55 (253)
371 3b9q_A Chloroplast SRP recepto 96.1 0.0028 9.6E-08 52.3 2.6 24 24-47 100-123 (302)
372 2oap_1 GSPE-2, type II secreti 96.0 0.0027 9.4E-08 56.2 2.7 23 26-48 262-284 (511)
373 4e22_A Cytidylate kinase; P-lo 96.0 0.0035 1.2E-07 50.2 3.0 21 25-45 28-48 (252)
374 1odf_A YGR205W, hypothetical 3 96.0 0.0032 1.1E-07 51.6 2.8 24 24-47 31-54 (290)
375 3d31_A Sulfate/molybdate ABC t 96.0 0.002 6.8E-08 54.2 1.5 23 26-48 28-50 (348)
376 1ukz_A Uridylate kinase; trans 96.0 0.0044 1.5E-07 47.6 3.4 23 24-46 15-37 (203)
377 2pt5_A Shikimate kinase, SK; a 96.0 0.003 1E-07 46.9 2.4 21 26-46 2-22 (168)
378 2cdn_A Adenylate kinase; phosp 96.0 0.004 1.4E-07 47.8 3.1 24 23-46 19-42 (201)
379 1e4v_A Adenylate kinase; trans 96.0 0.0034 1.2E-07 48.8 2.7 21 26-46 2-22 (214)
380 1via_A Shikimate kinase; struc 96.0 0.0031 1E-07 47.3 2.3 21 26-46 6-26 (175)
381 2pez_A Bifunctional 3'-phospho 95.9 0.0038 1.3E-07 47.0 2.8 24 24-47 5-28 (179)
382 1zd8_A GTP:AMP phosphotransfer 95.9 0.004 1.4E-07 48.9 3.0 22 25-46 8-29 (227)
383 1p9r_A General secretion pathw 95.9 0.0032 1.1E-07 54.3 2.6 24 25-48 168-191 (418)
384 1aky_A Adenylate kinase; ATP:A 95.9 0.004 1.4E-07 48.6 2.9 22 25-46 5-26 (220)
385 1qf9_A UMP/CMP kinase, protein 95.9 0.0047 1.6E-07 46.8 3.2 22 25-46 7-28 (194)
386 2vp4_A Deoxynucleoside kinase; 95.9 0.0032 1.1E-07 49.6 2.3 24 24-47 20-43 (230)
387 2bwj_A Adenylate kinase 5; pho 95.9 0.0044 1.5E-07 47.3 2.9 23 25-47 13-35 (199)
388 1zak_A Adenylate kinase; ATP:A 95.9 0.004 1.4E-07 48.7 2.7 22 26-47 7-28 (222)
389 2x8a_A Nuclear valosin-contain 95.9 0.0034 1.1E-07 51.0 2.3 21 27-47 47-67 (274)
390 3syl_A Protein CBBX; photosynt 95.9 0.019 6.4E-07 47.0 6.9 23 25-47 68-90 (309)
391 3sr0_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 48.4 2.5 21 27-47 3-23 (206)
392 2iyv_A Shikimate kinase, SK; t 95.9 0.0035 1.2E-07 47.3 2.2 22 25-46 3-24 (184)
393 3tlx_A Adenylate kinase 2; str 95.8 0.0045 1.5E-07 49.3 2.9 23 24-46 29-51 (243)
394 1oxx_K GLCV, glucose, ABC tran 95.8 0.0019 6.6E-08 54.4 0.8 23 26-48 33-55 (353)
395 1gtv_A TMK, thymidylate kinase 95.8 0.0024 8.1E-08 49.5 1.2 22 26-47 2-23 (214)
396 1vht_A Dephospho-COA kinase; s 95.8 0.0046 1.6E-07 48.1 2.8 22 25-46 5-26 (218)
397 3r20_A Cytidylate kinase; stru 95.8 0.0046 1.6E-07 48.9 2.8 24 23-46 8-31 (233)
398 3umf_A Adenylate kinase; rossm 95.8 0.005 1.7E-07 48.1 2.9 24 24-47 29-52 (217)
399 1uj2_A Uridine-cytidine kinase 95.8 0.0045 1.6E-07 49.4 2.8 24 23-46 21-44 (252)
400 1ixz_A ATP-dependent metallopr 95.8 0.0041 1.4E-07 49.7 2.4 22 26-47 51-72 (254)
401 2ze6_A Isopentenyl transferase 95.7 0.0047 1.6E-07 49.5 2.7 22 26-47 3-24 (253)
402 1zuh_A Shikimate kinase; alpha 95.7 0.005 1.7E-07 45.7 2.6 22 25-46 8-29 (168)
403 3nwj_A ATSK2; P loop, shikimat 95.7 0.004 1.4E-07 49.8 2.2 23 24-46 48-70 (250)
404 3pfi_A Holliday junction ATP-d 95.7 0.043 1.5E-06 45.5 8.6 23 25-47 56-78 (338)
405 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0043 1.5E-07 54.2 2.5 23 26-48 140-162 (460)
406 2og2_A Putative signal recogni 95.7 0.0047 1.6E-07 52.1 2.6 25 24-48 157-181 (359)
407 2pbr_A DTMP kinase, thymidylat 95.7 0.0051 1.7E-07 46.6 2.6 21 26-46 2-22 (195)
408 1e6c_A Shikimate kinase; phosp 95.7 0.0045 1.5E-07 46.1 2.3 21 26-46 4-24 (173)
409 3exa_A TRNA delta(2)-isopenten 95.7 0.0054 1.9E-07 50.6 2.9 26 22-47 1-26 (322)
410 2z0h_A DTMP kinase, thymidylat 95.7 0.0047 1.6E-07 47.0 2.4 22 26-47 2-23 (197)
411 1f2t_A RAD50 ABC-ATPase; DNA d 95.7 0.0063 2.2E-07 44.5 3.0 25 22-46 21-45 (149)
412 3ake_A Cytidylate kinase; CMP 95.7 0.0056 1.9E-07 47.0 2.8 21 26-46 4-24 (208)
413 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0055 1.9E-07 49.3 2.8 22 25-46 5-26 (260)
414 1jbk_A CLPB protein; beta barr 95.7 0.0055 1.9E-07 46.0 2.7 24 24-47 43-66 (195)
415 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.0053 1.8E-07 47.9 2.6 22 26-47 25-46 (235)
416 1in4_A RUVB, holliday junction 95.6 0.0044 1.5E-07 51.8 2.2 23 25-47 52-74 (334)
417 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0053 1.8E-07 54.8 2.8 23 26-48 49-71 (538)
418 2obl_A ESCN; ATPase, hydrolase 95.6 0.0058 2E-07 51.4 2.8 23 26-48 73-95 (347)
419 3ozx_A RNAse L inhibitor; ATP 95.6 0.0056 1.9E-07 54.6 2.7 23 26-48 27-49 (538)
420 3be4_A Adenylate kinase; malar 95.6 0.0073 2.5E-07 47.0 3.1 21 26-46 7-27 (217)
421 1cr0_A DNA primase/helicase; R 95.6 0.0056 1.9E-07 50.1 2.6 23 26-48 37-59 (296)
422 3euj_A Chromosome partition pr 95.6 0.0057 2E-07 53.6 2.7 23 25-47 30-52 (483)
423 2xb4_A Adenylate kinase; ATP-b 95.5 0.0058 2E-07 47.9 2.4 21 26-46 2-22 (223)
424 2f6r_A COA synthase, bifunctio 95.5 0.007 2.4E-07 49.3 3.0 22 24-45 75-96 (281)
425 1iy2_A ATP-dependent metallopr 95.5 0.006 2E-07 49.5 2.4 22 26-47 75-96 (278)
426 3j16_B RLI1P; ribosome recycli 95.5 0.0066 2.3E-07 54.9 2.8 23 26-48 105-127 (608)
427 3b60_A Lipid A export ATP-bind 95.4 0.0069 2.4E-07 54.6 2.9 23 26-48 371-393 (582)
428 3bfv_A CAPA1, CAPB2, membrane 95.4 0.026 8.9E-07 45.6 6.0 64 95-159 193-257 (271)
429 1lv7_A FTSH; alpha/beta domain 95.4 0.0073 2.5E-07 48.2 2.7 23 25-47 46-68 (257)
430 1m7g_A Adenylylsulfate kinase; 95.4 0.008 2.7E-07 46.6 2.8 23 25-47 26-48 (211)
431 2h92_A Cytidylate kinase; ross 95.4 0.0069 2.4E-07 47.1 2.4 25 22-46 1-25 (219)
432 2grj_A Dephospho-COA kinase; T 95.4 0.0079 2.7E-07 46.1 2.6 24 24-47 12-35 (192)
433 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0083 2.8E-07 50.8 3.0 23 24-46 23-45 (365)
434 1sxj_A Activator 1 95 kDa subu 95.4 0.065 2.2E-06 47.5 8.9 23 25-47 78-100 (516)
435 2w58_A DNAI, primosome compone 95.3 0.0082 2.8E-07 46.0 2.7 23 25-47 55-77 (202)
436 2yl4_A ATP-binding cassette SU 95.3 0.007 2.4E-07 54.7 2.6 23 26-48 372-394 (595)
437 1ak2_A Adenylate kinase isoenz 95.3 0.0091 3.1E-07 47.0 2.9 23 25-47 17-39 (233)
438 3bk7_A ABC transporter ATP-bin 95.3 0.0076 2.6E-07 54.5 2.7 23 26-48 119-141 (607)
439 3b5x_A Lipid A export ATP-bind 95.3 0.0077 2.6E-07 54.3 2.6 23 26-48 371-393 (582)
440 3qf4_B Uncharacterized ABC tra 95.3 0.0078 2.7E-07 54.5 2.6 23 26-48 383-405 (598)
441 2dpy_A FLII, flagellum-specifi 95.2 0.0091 3.1E-07 51.8 2.8 23 26-48 159-181 (438)
442 2cvh_A DNA repair and recombin 95.2 0.0091 3.1E-07 46.2 2.6 21 26-46 22-42 (220)
443 1n0w_A DNA repair protein RAD5 95.2 0.0094 3.2E-07 46.9 2.7 22 26-47 26-47 (243)
444 3ozx_A RNAse L inhibitor; ATP 95.2 0.0089 3E-07 53.3 2.7 23 26-48 296-318 (538)
445 3la6_A Tyrosine-protein kinase 95.2 0.048 1.7E-06 44.4 6.9 64 95-159 203-267 (286)
446 2p65_A Hypothetical protein PF 95.2 0.0071 2.4E-07 45.2 1.8 24 24-47 43-66 (187)
447 4a82_A Cystic fibrosis transme 95.2 0.0069 2.3E-07 54.6 2.0 23 26-48 369-391 (578)
448 1a7j_A Phosphoribulokinase; tr 95.2 0.0071 2.4E-07 49.5 1.9 23 24-46 5-27 (290)
449 3bos_A Putative DNA replicatio 95.2 0.01 3.5E-07 46.4 2.8 24 24-47 52-75 (242)
450 3cio_A ETK, tyrosine-protein k 95.1 0.065 2.2E-06 43.9 7.5 64 95-159 215-279 (299)
451 4eaq_A DTMP kinase, thymidylat 95.1 0.012 4E-07 46.4 2.9 23 25-47 27-49 (229)
452 1svm_A Large T antigen; AAA+ f 95.1 0.01 3.4E-07 50.5 2.6 21 26-46 171-191 (377)
453 1q3t_A Cytidylate kinase; nucl 95.1 0.012 4E-07 46.5 2.9 24 23-46 15-38 (236)
454 1yqt_A RNAse L inhibitor; ATP- 95.1 0.011 3.6E-07 52.8 2.8 23 26-48 314-336 (538)
455 2orw_A Thymidine kinase; TMTK, 95.0 0.034 1.2E-06 42.1 5.2 40 119-158 76-115 (184)
456 3qf4_A ABC transporter, ATP-bi 95.0 0.0087 3E-07 54.0 2.2 22 26-47 371-392 (587)
457 3bk7_A ABC transporter ATP-bin 95.0 0.011 3.8E-07 53.5 2.8 23 26-48 384-406 (607)
458 1ltq_A Polynucleotide kinase; 95.0 0.012 4.1E-07 48.1 2.7 22 25-46 3-24 (301)
459 1hqc_A RUVB; extended AAA-ATPa 94.9 0.084 2.9E-06 43.3 7.8 22 25-46 39-60 (324)
460 1p5z_B DCK, deoxycytidine kina 94.9 0.011 3.8E-07 47.4 2.3 25 23-47 23-47 (263)
461 3qks_A DNA double-strand break 94.9 0.015 5.3E-07 44.8 3.0 24 22-45 21-44 (203)
462 3j16_B RLI1P; ribosome recycli 94.8 0.013 4.5E-07 52.9 2.7 22 27-48 381-402 (608)
463 2ocp_A DGK, deoxyguanosine kin 94.8 0.017 6E-07 45.6 3.1 24 24-47 2-25 (241)
464 1nlf_A Regulatory protein REPA 94.8 0.015 5.2E-07 47.1 2.8 22 25-46 31-52 (279)
465 4edh_A DTMP kinase, thymidylat 94.8 0.016 5.4E-07 45.1 2.8 26 22-47 4-29 (213)
466 2qmh_A HPR kinase/phosphorylas 94.8 0.016 5.5E-07 44.5 2.7 23 25-47 35-57 (205)
467 3gmt_A Adenylate kinase; ssgci 94.7 0.015 5.2E-07 45.8 2.5 24 21-47 8-31 (230)
468 3co5_A Putative two-component 94.7 0.016 5.4E-07 41.9 2.5 22 25-46 28-49 (143)
469 1sxj_E Activator 1 40 kDa subu 94.7 0.013 4.3E-07 49.1 2.2 23 25-47 37-59 (354)
470 3lv8_A DTMP kinase, thymidylat 94.6 0.019 6.4E-07 45.5 3.0 27 21-47 24-50 (236)
471 3b9p_A CG5977-PA, isoform A; A 94.6 0.015 5.3E-07 47.3 2.6 24 24-47 54-77 (297)
472 1jr3_A DNA polymerase III subu 94.6 0.24 8.1E-06 41.4 10.0 22 26-47 40-61 (373)
473 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.016 5.6E-07 46.1 2.6 24 24-47 39-62 (262)
474 1e69_A Chromosome segregation 94.6 0.017 6E-07 47.9 2.8 24 22-45 22-45 (322)
475 3n70_A Transport activator; si 94.6 0.016 5.5E-07 42.0 2.3 23 25-47 25-47 (145)
476 1tue_A Replication protein E1; 94.5 0.014 4.7E-07 45.1 1.9 21 26-46 60-80 (212)
477 3h4m_A Proteasome-activating n 94.5 0.017 5.8E-07 46.7 2.6 24 24-47 51-74 (285)
478 4f4c_A Multidrug resistance pr 94.5 0.013 4.5E-07 57.8 2.2 22 26-47 1107-1128(1321)
479 4aby_A DNA repair protein RECN 94.5 0.0067 2.3E-07 52.1 0.1 22 24-45 60-81 (415)
480 1njg_A DNA polymerase III subu 94.5 0.018 6.2E-07 44.8 2.6 22 26-47 47-68 (250)
481 2chg_A Replication factor C sm 94.5 0.016 5.5E-07 44.5 2.3 23 25-47 39-61 (226)
482 1qhl_A Protein (cell division 94.5 0.0023 7.7E-08 50.5 -2.7 23 26-48 29-51 (227)
483 3a8t_A Adenylate isopentenyltr 94.5 0.021 7.1E-07 47.6 3.0 23 25-47 41-63 (339)
484 3cf0_A Transitional endoplasmi 94.4 0.019 6.4E-07 47.1 2.7 23 25-47 50-72 (301)
485 1fnn_A CDC6P, cell division co 94.4 0.018 6.3E-07 48.6 2.7 23 26-48 46-68 (389)
486 3q9l_A Septum site-determining 94.4 0.043 1.5E-06 43.6 4.7 64 94-159 114-186 (260)
487 1g3q_A MIND ATPase, cell divis 94.4 0.065 2.2E-06 41.9 5.7 63 95-159 113-176 (237)
488 3t15_A Ribulose bisphosphate c 94.4 0.021 7.2E-07 46.7 2.9 23 25-47 37-59 (293)
489 3cr8_A Sulfate adenylyltranfer 94.4 0.013 4.3E-07 52.4 1.6 23 25-47 370-392 (552)
490 1sxj_C Activator 1 40 kDa subu 94.4 0.017 5.8E-07 48.2 2.3 23 25-47 47-69 (340)
491 1hyq_A MIND, cell division inh 94.4 0.044 1.5E-06 43.7 4.7 63 95-159 112-175 (263)
492 3crm_A TRNA delta(2)-isopenten 94.3 0.021 7.1E-07 47.4 2.7 23 25-47 6-28 (323)
493 3qkt_A DNA double-strand break 94.3 0.023 7.9E-07 47.5 3.0 25 22-46 21-45 (339)
494 4tmk_A Protein (thymidylate ki 94.3 0.026 9E-07 43.9 3.0 26 22-47 1-26 (213)
495 2iw3_A Elongation factor 3A; a 94.2 0.022 7.5E-07 54.1 2.9 24 26-49 463-486 (986)
496 3d3q_A TRNA delta(2)-isopenten 94.2 0.023 8E-07 47.4 2.7 23 25-47 8-30 (340)
497 3tqf_A HPR(Ser) kinase; transf 94.2 0.026 9E-07 42.3 2.7 21 27-47 19-39 (181)
498 2dr3_A UPF0273 protein PH0284; 94.2 0.027 9.2E-07 44.3 3.0 22 26-47 25-46 (247)
499 2ius_A DNA translocase FTSK; n 94.1 0.03 1E-06 49.4 3.4 25 23-47 166-190 (512)
500 2qby_A CDC6 homolog 1, cell di 94.1 0.023 7.8E-07 47.8 2.6 24 24-47 45-68 (386)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.7e-26 Score=192.38 Aligned_cols=195 Identities=22% Similarity=0.313 Sum_probs=134.1
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
...++.|+++|.+|||||||+|+|++.++... .....++ +.....+...+ ...+++|||
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~------s~~~~tT------~~~~~~~~~~~---------~~~~i~lvD 65 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII------SPKAGTT------RMRVLGVKNIP---------NEAQIIFLD 65 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------CSSSCCC------CSCEEEEEEET---------TTEEEEEEE
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc------CCCCCce------eeEEEEEEecC---------CCCeEEEEE
Confidence 34467899999999999999999998876421 1111111 11111111000 011399999
Q ss_pred CCCCcc----------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHH-HHHHHhCCCCEEEEEecccccCcccccchhh
Q psy6316 101 TPGHES----------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIES-INILKSKKTPFVVALNKIDRLYNWNTMNRRD 169 (259)
Q Consensus 101 tpG~~~----------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~-l~~~~~~~~piivv~NK~D~~~~~~~~~~~~ 169 (259)
|||+.. +...+..++..+|++++|+|++++.+..+... +..+...+.|+++|+||+|+... ...
T Consensus 66 TPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~-----~~~ 140 (308)
T 3iev_A 66 TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP-----AKN 140 (308)
T ss_dssp CCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS-----GGG
T ss_pred CcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC-----HHH
Confidence 999744 33556678899999999999999888888877 78888889999999999999732 223
Q ss_pred HHHHHhhhhcccc--ccccccccccCcceeEEeecC---CCCCCcccccCC---cchhhHHHHhhhhhHHHHHHHHHhhc
Q psy6316 170 VRDIIKSQESSVQ--THKTVESARKGQEICIKIEPI---PGEAPKMFGRHF---DENDFLVSKISRQSIDACKDYFRDDL 241 (259)
Q Consensus 170 ~~~~~~~~~~~~~--~~~i~~Sa~~g~gv~~~l~~i---~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~l~~~~~~~~ 241 (259)
....+..+...++ .+++++||++|.|+++++..+ +.+.+.+++... .+.++++.+++||++ +....
T Consensus 141 ~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~------~~~~~ 214 (308)
T 3iev_A 141 VLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKA------MMLTR 214 (308)
T ss_dssp GHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHH------HHTCC
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHH------Hhhhh
Confidence 3333444443332 578899999999999876554 445556665543 478889999999988 66666
Q ss_pred CchhhH
Q psy6316 242 QKTDWQ 247 (259)
Q Consensus 242 ~~~~~~ 247 (259)
.++++.
T Consensus 215 ~eiP~~ 220 (308)
T 3iev_A 215 EEVPTS 220 (308)
T ss_dssp TTHHHH
T ss_pred hhcCCe
Confidence 666554
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=1.2e-25 Score=187.52 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=128.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
+|.++|+++|++|+|||||+|+|++.++... .....++. .....+.. ....+++||||
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv------s~~~~tTr------~~i~~i~~----------~~~~~l~l~DT 62 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI------SPRPQTTR------KRLRGILT----------EGRRQIVFVDT 62 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------CSSSCCCC------SCEEEEEE----------ETTEEEEEEEC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee------cCCCCcee------EEEEEEEE----------eCCcEEEEecC
Confidence 6778899999999999999999998876321 11111111 11111100 00113999999
Q ss_pred CCCcc--------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEecccccCcccccchhh-H
Q psy6316 102 PGHES--------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDRLYNWNTMNRRD-V 170 (259)
Q Consensus 102 pG~~~--------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~-~ 170 (259)
||+.+ +......+++.+|++++|+|++++.+..+..++..+... +.|+++|+||+|+... .. +
T Consensus 63 pG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~------~~~~ 136 (301)
T 1wf3_A 63 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY------PEEA 136 (301)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS------HHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc------hHHH
Confidence 99765 556667788999999999999988887777777778776 8999999999999742 12 3
Q ss_pred HHHHhhhhccccccccccccccCcceeEEeecCCC---CCCcccccCC----cchhhHHHHhhhhhHHHHHHHHHhhcCc
Q psy6316 171 RDIIKSQESSVQTHKTVESARKGQEICIKIEPIPG---EAPKMFGRHF----DENDFLVSKISRQSIDACKDYFRDDLQK 243 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~---~~~~~~~~~~----~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 243 (259)
...++.+ ....+++++||++|.|++.++..+.. +.+.+|++.. .+.++...+++|+++ +.....+
T Consensus 137 ~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~------~~~l~~e 208 (301)
T 1wf3_A 137 MKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEA------MKRLWHE 208 (301)
T ss_dssp HHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHH------HHTCCTT
T ss_pred HHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHH------HHHhhcc
Confidence 3334443 11235789999999999987665533 3455554322 256677888888887 5555555
Q ss_pred hhh
Q psy6316 244 TDW 246 (259)
Q Consensus 244 ~~~ 246 (259)
+++
T Consensus 209 iP~ 211 (301)
T 1wf3_A 209 VPY 211 (301)
T ss_dssp HHH
T ss_pred cCc
Confidence 544
No 3
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=2.3e-26 Score=183.03 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=108.8
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
||..+|+|+|.+|+|||||+++++...+...+.++++.++......... ..+ .+.||||
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~-----~~v----------------~l~iwDt 69 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-----RTI----------------RLQLWDT 69 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSS-----CEE----------------EEEEECC
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecc-----eEE----------------EEEEEEC
Confidence 5556799999999999999999999888776666665444322221111 111 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
+|+++|..++..+++.+|++++|+|.++..+..... ++..+.. .+.|+++|+||+|+... .. ...+..+++
T Consensus 70 aGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~-r~----V~~~e~~~~ 144 (216)
T 4dkx_A 70 AGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK-RQ----VSIEEGERK 144 (216)
T ss_dssp SCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG-CC----SCHHHHHHH
T ss_pred CCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc-Cc----ccHHHHhhH
Confidence 999999999999999999999999998865555433 4444433 46899999999998632 11 222334455
Q ss_pred hccccccccccccccCcceeEEeecCCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
...+++.++++||++|.|+++++..+..
T Consensus 145 a~~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 145 AKELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 5566788899999999999998776643
No 4
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.92 E-value=1.9e-25 Score=195.61 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=105.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCC-------HHHHHHHHHHHhCCCC-EEEEEecccccCc-cccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE-------PQTIESINILKSKKTP-FVVALNKIDRLYN-WNTM 165 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-iivv~NK~D~~~~-~~~~ 165 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++.. .++.+++..+...++| +++++||+|+... ++..
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~ 175 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 175 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHH
Confidence 49999999999999999999999999999999998765 5788888888888998 9999999998632 2222
Q ss_pred chhhHHHHHhhhhccc------cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHh
Q psy6316 166 NRRDVRDIIKSQESSV------QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRD 239 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~------~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 239 (259)
..+++...+..+...+ .++++++||++|.|+.++... .+|+.+. ..++.+++ ++.
T Consensus 176 ~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~----~~w~~g~--------------~L~~~l~~-i~~ 236 (439)
T 3j2k_7 176 RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF----CPWYIGL--------------PFIPYLDN-LPN 236 (439)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc----ccccCch--------------HHHHHHHh-CCC
Confidence 3344444454444333 346889999999999986543 3333211 12223333 456
Q ss_pred hcCchhhHHHHHHHHhhc
Q psy6316 240 DLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~ 257 (259)
+.+..+.+|+|+|+++|+
T Consensus 237 ~~~~~~~p~r~~v~~~~~ 254 (439)
T 3j2k_7 237 FNRSVDGPIRLPIVDKYK 254 (439)
T ss_pred CccCCCCCeEEEEEEEEc
Confidence 667788899999888774
No 5
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=2.7e-25 Score=196.63 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=125.3
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccc-------cCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCC
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTN-------VQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLE 92 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (259)
..|+..+|+++|++|+|||||+++|++.. ......++++.+.+...... .
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----------------------~ 71 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-----------------------E 71 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-----------------------T
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-----------------------C
Confidence 34677889999999999999999998765 11111112222221111111 1
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
...++|||||||++|...+..+++.+|++|+|+|++++...++.+++..+...++|+++++||+|+...+ ..+...+
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~---~~~~~~~ 148 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE---EIKRTEM 148 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH---HHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccch---hHHHHHH
Confidence 1139999999999999999999999999999999999999999999999999999999999999997421 2233333
Q ss_pred HHhhhhccc----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhh--cCchhh
Q psy6316 173 IIKSQESSV----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDD--LQKTDW 246 (259)
Q Consensus 173 ~~~~~~~~~----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~--~~~~~~ 246 (259)
.+..+.... ..+++++||++|.|++++ .+.+.+.++.+ .+..+.
T Consensus 149 ~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L------------------------------~~~L~~~i~~~~~~~~~~~ 198 (482)
T 1wb1_A 149 IMKSILQSTHNLKNSSIIPISAKTGFGVDEL------------------------------KNLIITTLNNAEIIRNTES 198 (482)
T ss_dssp HHHHHHHHSSSGGGCCEEECCTTTCTTHHHH------------------------------HHHHHHHHHHSCCCCCSSS
T ss_pred HHHHHHhhhcccccceEEEEECcCCCCHHHH------------------------------HHHHHHhhcCccccccccc
Confidence 444433222 567889999999998642 22222323344 455566
Q ss_pred HHHHHHHHhhcc
Q psy6316 247 QLMVDLKKVFQI 258 (259)
Q Consensus 247 ~~~~~i~~~~~~ 258 (259)
+|+++++++|++
T Consensus 199 ~~~~~v~~v~~~ 210 (482)
T 1wb1_A 199 YFKMPLDHAFPI 210 (482)
T ss_dssp CCBCBCSCEECC
T ss_pred cccccceeEEEe
Confidence 777888887764
No 6
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=2.4e-25 Score=171.51 Aligned_cols=154 Identities=40% Similarity=0.592 Sum_probs=110.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+.++|+++|.+|+|||||+++|++..+...+.++.+.+........ ....+.+||||
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~l~Dt~ 63 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-----------------------NDKKITFLDTP 63 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-----------------------TTEEEEESCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-----------------------CCceEEEEECC
Confidence 3567999999999999999999988775444333322221111100 01128999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh---hc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ---ES 179 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~---~~ 179 (259)
|++.+...+..++..+|++++|+|++++......+.+..+...+.|+++|+||+|+... ..++....+... ..
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~ 139 (178)
T 2lkc_A 64 GHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPE 139 (178)
T ss_dssp SSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBT
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChh
Confidence 99998888888899999999999999888888888888888889999999999999742 122333333222 12
Q ss_pred ccc--ccccccccccCcceeEEeecC
Q psy6316 180 SVQ--THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~--~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++ .+++++||++|.|+++++..+
T Consensus 140 ~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 140 EWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp TTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred HcCCcccEEEEecCCCCCHHHHHHHH
Confidence 222 578899999999998755443
No 7
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.91 E-value=1.7e-24 Score=169.86 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=106.9
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCC-CCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQD-GEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
+..+.++|+|+|.+|+|||||+++|++..+.. .+..+++.... ... .... .+.|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~----~~~-----~~~~----------------~~~i 67 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE----TFE-----KGRV----------------AFTV 67 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE----EEE-----ETTE----------------EEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE----EEE-----eCCE----------------EEEE
Confidence 44556779999999999999999999888765 33333332111 110 0011 2999
Q ss_pred EeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC-----------CCCEEEEEecccccCcccccc
Q psy6316 99 IDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK-----------KTPFVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 99 iDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~-----------~~piivv~NK~D~~~~~~~~~ 166 (259)
|||||++.+...+..+++.+|++|+|+|+++..+.... .++..+... +.|+++|+||+|+.... .
T Consensus 68 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~ 144 (199)
T 4bas_A 68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---T 144 (199)
T ss_dssp EEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---C
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---C
Confidence 99999999999999999999999999999987655443 455555443 88999999999997432 2
Q ss_pred hhhHHHHHhh--hhccccccccccccccCcceeEEeecC
Q psy6316 167 RRDVRDIIKS--QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 167 ~~~~~~~~~~--~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+++...+.. .....++.++++||++|.|+++++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 145 AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 2333333321 113456788999999999998855443
No 8
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.91 E-value=4e-25 Score=168.68 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=107.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|.+|+|||||+++|++..+......+++............ ... .+.+|||
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~~~D~ 62 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-----TTV----------------KFEIWDT 62 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT-----EEE----------------EEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC-----EEE----------------EEEEEeC
Confidence 3456699999999999999999998877654444443332211111110 011 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....++ ...+
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~~~----~~~~ 137 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR-AVDFQE----AQSY 137 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHH----HHHH
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc-ccCHHH----HHHH
Confidence 99999999999999999999999999875443332 34444443 368899999999986421 112222 2333
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+++++++||++|.|+++++..+
T Consensus 138 ~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 138 ADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 34456788999999999998866554
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=1.3e-24 Score=170.02 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=109.7
Q ss_pred hhhhhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCC
Q psy6316 4 VFNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGG 83 (259)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
.|.+...+..+.+.. +.++|+++|.+|+|||||+|+|++..+........+. +....... .+.
T Consensus 7 ~~~~s~~~~~~~~~~----~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-----t~~~~~~~--------~~~ 69 (195)
T 1svi_A 7 EIVISAVKPEQYPEG----GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGK-----TQTLNFYI--------IND 69 (195)
T ss_dssp EEEEEESSGGGSCCS----CCCEEEEEEBTTSSHHHHHHHHHTC------------------CCEEEEE--------ETT
T ss_pred EEEEecCChhhCCCC----CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCc-----eeeEEEEE--------ECC
Confidence 355555555555442 3567999999999999999999987643222111111 11111000 001
Q ss_pred CCCCCCCCCCCCeEEEeCCC----------CcchHHHHHhhccCC---CeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE
Q psy6316 84 EVGGPGPLEIPGLLIIDTPG----------HESFSNLRNRGSSLC---DIAILVVDIMHGLEPQTIESINILKSKKTPFV 150 (259)
Q Consensus 84 ~~~~~~~~~~~~~~liDtpG----------~~~~~~~~~~~~~~a---d~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii 150 (259)
.+.+||||| ++.+...+..+++.+ |++++|+|++++.+..+..++..+...+.|++
T Consensus 70 -----------~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i 138 (195)
T 1svi_A 70 -----------ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI 138 (195)
T ss_dssp -----------TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE
T ss_pred -----------cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE
Confidence 299999999 566666677777666 99999999999888888877788888899999
Q ss_pred EEEecccccCcccccchhhHHHHHhh-hhccccccccccccccCcceeEEeec
Q psy6316 151 VALNKIDRLYNWNTMNRRDVRDIIKS-QESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 151 vv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
+|+||+|+.... ........+.+ +....+.+++++||++|.|+++++..
T Consensus 139 ~v~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 188 (195)
T 1svi_A 139 VIATKADKIPKG---KWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188 (195)
T ss_dssp EEEECGGGSCGG---GHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcccCChH---HHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHH
Confidence 999999997421 12222233333 33334578889999999999875543
No 10
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=5.9e-25 Score=167.76 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=108.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++..+.....++.+.+.......... ... .+.+|||||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~~~D~~G 61 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE-----HTV----------------KFEIWDTAG 61 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT-----EEE----------------EEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEECCC
Confidence 45699999999999999999998877554444443332211111110 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+...... .+...+....+..
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~v~~~~~~~~~~ 139 (170)
T 1ek0_A 62 QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGE--RKVAREEGEKLAE 139 (170)
T ss_dssp SGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC--CCSCHHHHHHHHH
T ss_pred ChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc--cCCCHHHHHHHHH
Confidence 999999999999999999999999875444433 24444433 47899999999999743211 1111222333444
Q ss_pred cccccccccccccCcceeEEeecCCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+++++++||++|.|+++++..+..
T Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 140 EKGLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 45678899999999999887665543
No 11
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=3.9e-25 Score=170.77 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=110.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||+++|++..+......+++.+.......... ... .+.||||
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt 68 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND-----ATV----------------KFEIWDT 68 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT-----EEE----------------EEEEEEC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC-----EEE----------------EEEEEeC
Confidence 4456699999999999999999998877655444443332211111110 001 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
||++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... .... .....+
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~----~~~~~~ 143 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR-KVTA----EDAQTY 143 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC-CSCH----HHHHHH
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc-cCCH----HHHHHH
Confidence 9999999988999999999999999987554333 345555554 368899999999996421 1122 223334
Q ss_pred hccccccccccccccCcceeEEeecCCCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
....+++++++||++|.|+++++..+...
T Consensus 144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 144 AQENGLFFMETSAKTATNVKEIFYEIARR 172 (181)
T ss_dssp HHHTTCEEEECCSSSCTTHHHHHHHHHHT
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44456788999999999999876655433
No 12
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=3.5e-24 Score=178.94 Aligned_cols=182 Identities=20% Similarity=0.305 Sum_probs=123.6
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.+|.++|+++|++|||||||+|+|++..+.. .... +.+++....++.. ....++++||
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i------~s~~------~~tTr~~~~gi~~----------~~~~~i~~iD 62 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISI------TSRK------AQTTRHRIVGIHT----------EGAYQAIYVD 62 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEE------CCCC------SSCCSSCEEEEEE----------ETTEEEEEES
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccc------cCCC------CCcceeeEEEEEE----------ECCeeEEEEE
Confidence 4677889999999999999999999876521 1111 1111111111100 0011399999
Q ss_pred CCCCc-chH--------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHH
Q psy6316 101 TPGHE-SFS--------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 101 tpG~~-~~~--------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
|||+. ... .....+++.+|++++|+|+++ .+..+...+..+...+.|+++++||+|+... ...+.
T Consensus 63 TpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-----~~~~~ 136 (301)
T 1ega_A 63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-----KADLL 136 (301)
T ss_dssp SSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-----HHHHH
T ss_pred CcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-----HHHHH
Confidence 99987 322 222356789999999999987 8877777777888788999999999998731 33445
Q ss_pred HHHhhhhccccc-cccccccccCcceeEEeecCCC---CCCcccccCC---cchhhHHHHhhhhhH
Q psy6316 172 DIIKSQESSVQT-HKTVESARKGQEICIKIEPIPG---EAPKMFGRHF---DENDFLVSKISRQSI 230 (259)
Q Consensus 172 ~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i~~---~~~~~~~~~~---~~~~~~~~~~~~e~~ 230 (259)
..+..+...+++ .++++||++|.|++.++..+.. +.+.+|+... .+.++...+++|+++
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l 202 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKL 202 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHH
Confidence 555555555555 5789999999999987665543 3444554332 366777888888876
No 13
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=5.1e-25 Score=173.49 Aligned_cols=166 Identities=19% Similarity=0.105 Sum_probs=107.2
Q ss_pred hhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCC
Q psy6316 11 KIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGP 90 (259)
Q Consensus 11 ~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (259)
..+..++..+..+..+|+++|.+|+|||||+|+|++..+...+..+.+..+. ....... ..
T Consensus 11 ~~~~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-----~~------------- 71 (201)
T 3oes_A 11 RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGK-----DE------------- 71 (201)
T ss_dssp ------------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEE-EEEC---------C-------------
T ss_pred cccCCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECC-----EE-------------
Confidence 3445555566677788999999999999999999998876555444433221 1111000 00
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCccccc
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTM 165 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~ 165 (259)
..+.||||||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+.... ..
T Consensus 72 ---~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~v 147 (201)
T 3oes_A 72 ---FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPER-EV 147 (201)
T ss_dssp ---EEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGC-CS
T ss_pred ---EEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccc-cc
Confidence 1289999999999988888999999999999999875444333 34444443 368999999999987421 11
Q ss_pred chhhHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 166 NRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
. ......+....+++++++||++|.|+++++..+
T Consensus 148 ~----~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 148 Q----AVEGKKLAESWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp C----HHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 1 222334444556788999999999998865544
No 14
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.1e-24 Score=170.42 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=108.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+++.+.......... .. ..+.||||||
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------~~~~i~Dt~G 81 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-----EL----------------HKFLIWDTAG 81 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-----SE----------------EEEEEEEECC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-----EE----------------EEEEEEcCCC
Confidence 45699999999999999999998876544433333322211111110 00 1299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... ..... +....+..
T Consensus 82 ~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~-~~v~~----~~~~~~~~ 156 (192)
T 2fg5_A 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI-REVPL----KDAKEYAE 156 (192)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCH----HHHHHHHH
T ss_pred chhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc-cccCH----HHHHHHHH
Confidence 999999889999999999999999886544433 34455544 37899999999999632 11122 22344444
Q ss_pred cccccccccccccCcceeEEeecCCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+++++++||++|.|+++++..+..
T Consensus 157 ~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 157 SIGAIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp TTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 55678899999999999886665543
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.90 E-value=1.3e-24 Score=166.07 Aligned_cols=154 Identities=23% Similarity=0.194 Sum_probs=98.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+.....++++.+.......... ..+ .+.+|||||
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~Dt~G 64 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG-----KRV----------------NLAIWDTAG 64 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS-----CEE----------------EEEEEECCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECC-----EEE----------------EEEEEECCC
Confidence 35699999999999999999998876554444443322211111110 000 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....+ ....+..
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~----~~~~~~~ 139 (170)
T 1z08_A 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER-HVSIQ----EAESYAE 139 (170)
T ss_dssp C-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC-CSCHH----HHHHHHH
T ss_pred cHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc-ccCHH----HHHHHHH
Confidence 999999888999999999999999875444333 24444433 578999999999997421 11222 2333444
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 140 SVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp HTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred HcCCeEEEecCCCCCCHHHHHHHH
Confidence 456788999999999998755433
No 16
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.90 E-value=1.2e-24 Score=165.50 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=103.4
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|++|+|||||+++|++..+.....++...... ...... .... .+.+|||
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~----------------~~~l~D~ 58 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR-KEIEVD-----SSPS----------------VLEILDT 58 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-----TEEE----------------EEEEEEC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE-EEEEEC-----CEEE----------------EEEEEEC
Confidence 34567999999999999999999988765444333322110 000000 0000 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+. ..+.|+++|+||+|+.... .... .....
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~----~~~~~ 133 (167)
T 1kao_A 59 AGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER-EVSS----SEGRA 133 (167)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC-CSCH----HHHHH
T ss_pred CCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc-cCCH----HHHHH
Confidence 99999999999999999999999999875443332 2333332 2479999999999986321 1112 22233
Q ss_pred hhccccccccccccccCcceeEEeec
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
+....+++++++||++|.|+++++..
T Consensus 134 ~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 134 LAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp HHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred HHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 33444678899999999999875443
No 17
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=1.3e-24 Score=165.43 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=103.8
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|.+|+|||||+++|++..+...+.++.+...... .... ... ..+.+|||
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-----~~~----------------~~~~l~D~ 58 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVD-----CQQ----------------CMLEILDT 58 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EESS-----SCE----------------EEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEE-EEEC-----CEE----------------EEEEEEEC
Confidence 3456799999999999999999998876554444333222110 0000 000 12899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... .....++. ..
T Consensus 59 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~----~~ 133 (167)
T 1c1y_A 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE-RVVGKEQG----QN 133 (167)
T ss_dssp CSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG-CCSCHHHH----HH
T ss_pred CChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc-ccCCHHHH----HH
Confidence 99999999999999999999999999875433332 23333332 47999999999999742 11122222 23
Q ss_pred hhccc-cccccccccccCcceeEEeec
Q psy6316 177 QESSV-QTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 177 ~~~~~-~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
+...+ +.+++++||++|.|+++++..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 134 LARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp HHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred HHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 33333 578889999999999875543
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=1.4e-24 Score=165.79 Aligned_cols=155 Identities=23% Similarity=0.187 Sum_probs=107.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+|+|++..+.....++.+.+.......... ... .+.+||||
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~~~Dt~ 63 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN-----ELH----------------KFLIWDTA 63 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT-----EEE----------------EEEEEEEC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-----eEE----------------EEEEEcCC
Confidence 456699999999999999999998887554444443332211111110 001 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
|++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ... .+....+.
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~-~v~----~~~~~~~~ 138 (170)
T 1z0j_A 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR-EVM----ERDAKDYA 138 (170)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC-CSC----HHHHHHHH
T ss_pred CchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc-ccC----HHHHHHHH
Confidence 9999998888999999999999999876554443 34455543 367899999999997421 111 22233344
Q ss_pred ccccccccccccccCcceeEEeecC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...+++++++||++|.|+++++..+
T Consensus 139 ~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 139 DSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp HHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 4456788999999999998765544
No 19
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.90 E-value=3.6e-24 Score=164.78 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=101.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+.....++.+.+.......... ..+ .+.+|||||
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G 65 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG-----HFV----------------TMQIWDTAG 65 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETT-----EEE----------------EEEEEECCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECC-----EEE----------------EEEEEeCCC
Confidence 45699999999999999999998876544444433322111111110 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-------CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.. .....++......
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~ 143 (177)
T 1wms_A 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEAQAWCR 143 (177)
T ss_dssp CGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHH
T ss_pred chhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc--cccCHHHHHHHHH
Confidence 999999999999999999999999875443332 23333332 5689999999999862 1112222222222
Q ss_pred hhhccccccccccccccCcceeEEeec
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
. ..+++++++||++|.|+++++..
T Consensus 144 ~---~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 144 D---NGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp H---TTCCCEEECCTTTCTTHHHHHHH
T ss_pred h---cCCceEEEEeCCCCCCHHHHHHH
Confidence 1 34578899999999999875543
No 20
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=2.9e-24 Score=188.16 Aligned_cols=143 Identities=24% Similarity=0.279 Sum_probs=102.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++...+..+++..+...+.| +++|+||+|+... .....+.+...
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~-~~~~~~~i~~~ 183 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGF-DERVFESIKAD 183 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTS-CHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcc-cHHHHHHHHHH
Confidence 399999999999999999999999999999999999988998888888888875 8999999999742 11112234444
Q ss_pred Hhhhhcccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHH
Q psy6316 174 IKSQESSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQL 248 (259)
Q Consensus 174 ~~~~~~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 248 (259)
+..+...++ ++++++||++|.|+++++.. .+|+.+.. ..+.++. ++.+.+..+.+|
T Consensus 184 ~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~----~~w~~g~~--------------L~~~l~~-i~~~~~~~~~~~ 244 (434)
T 1zun_B 184 YLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER----SPWYAGQS--------------LMEILET-VEIASDRNYTDL 244 (434)
T ss_dssp HHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT----CTTCCSCC--------------TTHHHHH-SCCTTCCCSSSC
T ss_pred HHHHHHHhCCCccCceEEEEeccCCCCccccccc----CccccCch--------------HHHHHhc-CCCcccCCCCCc
Confidence 555444444 67889999999999885543 33332110 1112222 345556667788
Q ss_pred HHHHHHhhc
Q psy6316 249 MVDLKKVFQ 257 (259)
Q Consensus 249 ~~~i~~~~~ 257 (259)
+++|+++|+
T Consensus 245 ~~~v~~v~~ 253 (434)
T 1zun_B 245 RFPVQYVNR 253 (434)
T ss_dssp EEECCEEEC
T ss_pred EEEEEEEec
Confidence 888887764
No 21
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=3.6e-24 Score=168.67 Aligned_cols=154 Identities=15% Similarity=0.137 Sum_probs=107.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|++..+......+++.+.......... ... .+.||||||+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G~ 67 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND-----KRI----------------KLQIWDTAGL 67 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT-----EEE----------------EEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC-----eEE----------------EEEEEECCCc
Confidence 4699999999999999999998877554444433222211111110 011 2999999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .... .....+...
T Consensus 68 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~----~~~~~~~~~ 142 (203)
T 1zbd_A 68 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER-VVSS----ERGRQLADH 142 (203)
T ss_dssp GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC-CSCH----HHHHHHHHH
T ss_pred hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc-ccCH----HHHHHHHHH
Confidence 99999999999999999999999875443332 34455544 478999999999996421 1112 223334444
Q ss_pred ccccccccccccCcceeEEeecCC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+++++++||++|.|+++++..+.
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 143 LGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp HTCEEEECBTTTTBSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999988665543
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.90 E-value=2e-24 Score=166.35 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=105.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+.+.+.......... ... .+.+|||||
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 73 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-----QKI----------------KLQIWDTAG 73 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT-----EEE----------------EEEEEECTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC-----eEE----------------EEEEEECCC
Confidence 45699999999999999999998876544433333222111111100 001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .... +..+.+..
T Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~----~~~~~~~~ 148 (179)
T 1z0f_A 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR-DVTY----EEAKQFAE 148 (179)
T ss_dssp GGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCH----HHHHHHHH
T ss_pred ChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCH----HHHHHHHH
Confidence 999999999999999999999999876444333 24444433 578999999999996321 1122 22333444
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 149 ENGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHH
Confidence 45678899999999999875543
No 23
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.90 E-value=2.8e-24 Score=166.75 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=105.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++..+......+.+.+.......... ... .+.+|||||
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 68 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG-----KYV----------------KLQIWDTAG 68 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT-----EEE----------------EEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC-----EEE----------------EEEEEeCCC
Confidence 45699999999999999999998887655544444333221111110 001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHH---hCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILK---SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~---~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+. ..+.|+++|+||+|+.... ..... ....+..
T Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~----~~~~~~~ 143 (186)
T 2bme_A 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR-EVTFL----EASRFAQ 143 (186)
T ss_dssp SGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHH----HHHHHHH
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHH----HHHHHHH
Confidence 999999999999999999999999875443332 2443333 3578999999999996321 11222 2233344
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 144 ~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 144 ENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHH
T ss_pred HcCCEEEEecCCCCCCHHHHHHH
Confidence 45678899999999999775443
No 24
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=3.7e-24 Score=168.74 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=105.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+...+..+++.++......... ..+ .+.||||||
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~l~Dt~G 84 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING-----EKV----------------KLQIWDTAG 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT-----EEE----------------EEEEEEECC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEECCC
Confidence 45699999999999999999998887655544444333221111110 001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+... .....+ ..+.+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~-~~v~~~----~~~~~~~ 159 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER-REVSQQ----RAEEFSE 159 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG-CSSCHH----HHHHHHH
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-cccCHH----HHHHHHH
Confidence 99999999999999999999999987544332 234444443 46899999999999632 111122 2233334
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 160 AQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHH
Confidence 44678899999999999875543
No 25
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=3.2e-24 Score=163.20 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=101.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|.+|+|||||+++|++..+.....++........ ... ..... .+.+|||
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~l~D~ 59 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVL-----DGEEV----------------QIDILDT 59 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEE-----TTEEE----------------EEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEE-EEE-----CCEEE----------------EEEEEEC
Confidence 4556799999999999999999998876544433333222100 000 00001 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....+ ....
T Consensus 60 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~----~~~~ 134 (168)
T 1u8z_A 60 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR-QVSVE----EAKN 134 (168)
T ss_dssp CC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC-CSCHH----HHHH
T ss_pred CCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC-ccCHH----HHHH
Confidence 99999999999999999999999999875443332 23333332 378999999999997421 11222 2333
Q ss_pred hhccccccccccccccCcceeEEeec
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
+....+++++++||++|.|+++++..
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 135 RADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 33445678899999999999875543
No 26
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=1e-23 Score=164.63 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=105.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.++|+++|.+|+|||||+|+|++...... ....+ ++....... . ..++.+|||||
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~-----~t~~~~~~~--------~-----------~~~~~i~Dt~G 77 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPG-----KTRSINFYL--------V-----------NSKYYFVDLPG 77 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCC-----CCCCEEEEE--------E-----------TTTEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCC-----CccCeEEEE--------E-----------CCcEEEEECCC
Confidence 46799999999999999999998763211 11111 111110000 0 01299999999
Q ss_pred ----------CcchHHHHHhhccC---CCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhH
Q psy6316 104 ----------HESFSNLRNRGSSL---CDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 104 ----------~~~~~~~~~~~~~~---ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
+..+...+..+++. +|++++|+|+++.........+..+...+.|+++|+||+|+.... .....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~---~~~~~ 154 (195)
T 3pqc_A 78 YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMS---ERAKK 154 (195)
T ss_dssp BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG---GHHHH
T ss_pred CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChH---HHHHH
Confidence 45566666666654 499999999988888888888888888899999999999997421 23344
Q ss_pred HHHHhhhhcc-ccccccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESS-VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~-~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.+...... ..++++++||++|.|+++++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 155 LEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp HHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 4445554444 34688899999999998855443
No 27
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.90 E-value=3.3e-24 Score=167.12 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=105.8
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..++..+|+++|.+|+|||||+++|++..+......+++.+.......... ... .+.||
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~ 74 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-----ERI----------------KIQLW 74 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-----EEE----------------EEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECC-----EEE----------------EEEEE
Confidence 345667899999999999999999998877654444433222211111110 001 29999
Q ss_pred eCCCCcchH-HHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 100 DTPGHESFS-NLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 100 DtpG~~~~~-~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
||||++.+. ..+..+++.+|++|+|+|+++..+... ..++..+. ..+.|+++|+||+|+.... ... ...
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~v~----~~~ 149 (189)
T 1z06_A 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI-QVP----TDL 149 (189)
T ss_dssp ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC-CSC----HHH
T ss_pred ECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-eeC----HHH
Confidence 999999888 778888999999999999987544333 22334333 3478999999999996321 111 222
Q ss_pred HhhhhccccccccccccccC---cceeEEeecCC
Q psy6316 174 IKSQESSVQTHKTVESARKG---QEICIKIEPIP 204 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g---~gv~~~l~~i~ 204 (259)
.+.+....+++++++||++| .|+.+++..+.
T Consensus 150 ~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~ 183 (189)
T 1z06_A 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183 (189)
T ss_dssp HHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred HHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHH
Confidence 33444445678899999999 78777665554
No 28
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=2.1e-24 Score=168.92 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=109.6
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||+++|++..+...+.++.+..+... ... ....+ .+.+|||
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~i~Dt 78 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKY-----KNEEF----------------ILHLWDT 78 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEE-----TTEEE----------------EEEEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE-EEE-----CCEEE----------------EEEEEEC
Confidence 3456699999999999999999999887655544444333211 000 00001 1799999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+..... .....+....+
T Consensus 79 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~ 155 (194)
T 3reg_A 79 AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS---DDVTKQEGDDL 155 (194)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT---TCCCHHHHHHH
T ss_pred CCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC---CcccHHHHHHH
Confidence 99999999999999999999999999886555442 345555443 689999999999974311 12223334444
Q ss_pred hcccccc-ccccccccCcceeEEeecC
Q psy6316 178 ESSVQTH-KTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~-~i~~Sa~~g~gv~~~l~~i 203 (259)
....++. ++++||++|.|+++++..+
T Consensus 156 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 156 CQKLGCVAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp HHHHTCSCEEECBTTTTBSHHHHHHHH
T ss_pred HHhcCCCEEEEeecCCCCCHHHHHHHH
Confidence 4455666 8899999999998865444
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=4.8e-24 Score=166.29 Aligned_cols=161 Identities=19% Similarity=0.099 Sum_probs=105.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecc-ccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIG-ATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..+|+++|.+|+|||||+++|++..+......+++.++. .......... .... .......+.+||||
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~l~Dt~ 78 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP--DGAV----------GRGQRIHLQLWDTA 78 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSC--CCSS----------CCCEEEEEEEEEEC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCc--cccc----------ccCcEEEEEEEeCC
Confidence 356999999999999999999988775544444433222 1111100000 0000 00001139999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ... .+....+
T Consensus 79 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~----~~~~~~~ 153 (195)
T 3bc1_A 79 GLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR-AVK----EEEAREL 153 (195)
T ss_dssp CSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC-CSC----HHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccC----HHHHHHH
Confidence 999999999999999999999999987544443 334444443 578999999999986421 111 2223334
Q ss_pred hccccccccccccccCcceeEEee
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
....+++++++||++|.|+++++.
T Consensus 154 ~~~~~~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 154 AEKYGIPYFETSAANGTNISHAIE 177 (195)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHH
T ss_pred HHHcCCCEEEEECCCCCCHHHHHH
Confidence 444467889999999999977443
No 30
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=3.1e-24 Score=190.28 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCCC-CEEEEEecccccCcccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~ 166 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++ ...+..+++..+...+. |+|+|+||+|+.. +....
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~-~~~~~ 190 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-WSQQR 190 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT-TCHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc-chHHH
Confidence 499999999999999999999999999999999886 45677888888888775 5999999999974 22222
Q ss_pred hhhHHHHHhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHh--
Q psy6316 167 RRDVRDIIKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRD-- 239 (259)
Q Consensus 167 ~~~~~~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-- 239 (259)
.+++...+..+.... .++++++||++|.|++++..... ..+|+.+. ...+.++.+.+..+.
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~-~~~wy~g~-----------~L~~~L~~i~~~~~~~~ 258 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDE-VRQWYNGP-----------NLMSTLENAAFKISKEN 258 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHH-HHHHCCSC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccc-cccccCCC-----------CHHHHHHHHHhhccccc
Confidence 334444444443322 45778999999999987432110 01222111 112344444333443
Q ss_pred hcCchhhHHHHHHHHhhcc
Q psy6316 240 DLQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~ 258 (259)
+.+..+.||+|+|+++|++
T Consensus 259 p~~~~~~p~r~~v~~v~~~ 277 (483)
T 3p26_A 259 EGINKDDPFLFSVLEIIPS 277 (483)
T ss_dssp TTCCSSSCCEEEEEEEEC-
T ss_pred ccccCCCceEEEEEEEEcc
Confidence 5677889999999999875
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.90 E-value=1.4e-24 Score=167.21 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=105.7
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|++|+|||||+++|++..+.....++.+.+.......... ... .+.+|||
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~~~Dt 70 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-----RTV----------------RLQLWDT 70 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT-----EEE----------------EEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECC-----eEE----------------EEEEEEC
Confidence 4556799999999999999999998877554444433222111111110 000 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
||++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... .....+ ....
T Consensus 71 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~----~~~~ 145 (179)
T 2y8e_A 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEE----GERK 145 (179)
T ss_dssp CCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGC-CSCHHH----HHHH
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccC-cCCHHH----HHHH
Confidence 9999999888899999999999999987433332 234444432 478999999999987421 111222 2233
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+++++++||++|.|+++++..+
T Consensus 146 ~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 146 AKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 33446788999999999998866544
No 32
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=1.5e-24 Score=188.38 Aligned_cols=204 Identities=22% Similarity=0.236 Sum_probs=134.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCC---CCcc--------eeeccccccCccccccccccccCCCCCCCCCCCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGE---AGGI--------TQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLE 92 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (259)
..+|+++|++|+|||||+++|++.....+. .... ....+.+ ...... .. ...
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiT-i~~~~~-----~~-----------~~~ 73 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGIT-INTAHV-----EY-----------ETA 73 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCC-CSCEEE-----EE-----------ECS
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCC-EEeeee-----Ee-----------ccC
Confidence 456999999999999999999874211110 0000 0000110 000000 00 111
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~ 171 (259)
...+.|||||||++|...+..+++.+|++|+|+|++++...+..+++..+...++| +++++||+|+.... ...+.+.
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~~~~~~~ 151 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--ELLDLVE 151 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--HHHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--HHHHHHH
Confidence 22499999999999999999999999999999999999999999999999889999 88999999997321 0112222
Q ss_pred HHHhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhh
Q psy6316 172 DIIKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDW 246 (259)
Q Consensus 172 ~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 246 (259)
..+..+.... .++++++||++|.|+...-.. ... . ...+ .+-+.+.++.+.++++.+.+..+.
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~-------~~~-~---~~~~-~~~i~~Ll~~l~~~lp~p~~~~~~ 219 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPK-------TRR-G---ENEW-VDKIWELLDAIDEYIPTPVRDVDK 219 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTT-------CCT-T---SCHH-HHHHHHHHHHHHHHSCCCCCCCSS
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhhhhccccc-------ccc-C---CCcc-cccHHHHHHHHHhhcCCCCCCCCC
Confidence 3333333332 357889999999986431000 000 0 0112 223467778888888888888889
Q ss_pred HHHHHHHHhhcc
Q psy6316 247 QLMVDLKKVFQI 258 (259)
Q Consensus 247 ~~~~~i~~~~~~ 258 (259)
+|+++|+++|++
T Consensus 220 p~~~~v~~v~~~ 231 (405)
T 2c78_A 220 PFLMPVEDVFTI 231 (405)
T ss_dssp CCEEECCEEEEE
T ss_pred CcEEEEEEEEEc
Confidence 999999998874
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=168.69 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=99.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+++.+.......... ..+ .+.+|||||
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~l~Dt~G 84 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG-----KKI----------------RLQIWDTAG 84 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETT-----EEE----------------EEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECC-----eEE----------------EEEEEeCCC
Confidence 45699999999999999999998876544433333222211111100 001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....++ .+.+..
T Consensus 85 ~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~-~v~~~~----~~~~~~ 159 (192)
T 2il1_A 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-EITRQQ----GEKFAQ 159 (192)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHH----HHHHHH
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHH----HHHHHH
Confidence 999999999999999999999999876544443 23344433 478999999999986421 112222 223333
Q ss_pred c-ccccccccccccCcceeEEeec
Q psy6316 180 S-VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~-~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
. .++.++++||++|.|+++++..
T Consensus 160 ~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 160 QITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp TSTTCEEEECBTTTTBSHHHHHHH
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHH
Confidence 3 2578889999999999875543
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.90 E-value=1.7e-24 Score=164.98 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=103.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++..+...+..+++.+.......... ... .+.+|||||
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 63 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-----EDV----------------RLMLWDTAG 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC-----EEE----------------EEEEEcCCC
Confidence 35699999999999999999998876554444333222111111100 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .... ...+.+...
T Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~----~~~~~~~~~ 138 (168)
T 1z2a_A 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS-CIKN----EEAEGLAKR 138 (168)
T ss_dssp GGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC-SSCH----HHHHHHHHH
T ss_pred cHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc-ccCH----HHHHHHHHH
Confidence 998888888899999999999999875433322 34444433 478999999999987421 1112 223334444
Q ss_pred ccccccccccccCcceeEEeec
Q psy6316 181 VQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.+++++++||++|.|+++++..
T Consensus 139 ~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 139 LKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp HTCEEEECBTTTTBSSHHHHHH
T ss_pred cCCeEEEEecCCCCCHHHHHHH
Confidence 5678899999999999775443
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.90 E-value=2e-24 Score=168.33 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=104.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+.+.++......... ... .+.+|||||
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 80 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD-----KRI----------------KLQIWDTAG 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT-----EEE----------------EEEEEECCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC-----eEE----------------EEEEEeCCC
Confidence 35699999999999999999998877544433333222111111100 011 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ... ....+.+..
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~----~~~~~~~~~ 155 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER-VVP----AEDGRRLAD 155 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSC----HHHHHHHHH
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc-CCC----HHHHHHHHH
Confidence 99998888899999999999999987544333 235555554 378999999999986421 111 222334444
Q ss_pred cccccccccccccCcceeEEee
Q psy6316 180 SVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
..+++++++||++|.|+++++.
T Consensus 156 ~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 156 DLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp HHTCEEEECBTTTTBSHHHHHH
T ss_pred HcCCeEEEEECCCCCCHHHHHH
Confidence 4567899999999999977543
No 36
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.90 E-value=4.2e-24 Score=167.91 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=106.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccc----------cccccccCCC------CCCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIR----------ENTKHVRGPG------GEVGG 87 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------~~~~~ 87 (259)
..+|+++|++|+|||||+|+|++..+.....++++..+........... .....+.... .....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 3459999999999999999999988765555444433322211111100 0000000000 00000
Q ss_pred CCCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-CCCCEEEEEecccccCccccc
Q psy6316 88 PGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-KKTPFVVALNKIDRLYNWNTM 165 (259)
Q Consensus 88 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-~~~piivv~NK~D~~~~~~~~ 165 (259)
+.......+.||||||++.+...+..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+| .. ....
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~-~~~~ 164 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KN-KFQV 164 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC--CCS
T ss_pred cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cc-cccC
Confidence 0000112499999999999999899999999999999999876554443 34555544 4689999999999 32 1222
Q ss_pred chhhHHHHHhhhhccccccccccccccCcceeEEee
Q psy6316 166 NRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
..++ +..+....+++++++||++|.|+++++.
T Consensus 165 ~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 165 DILE----VQKYAQDNNLLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp CHHH----HHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred CHHH----HHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 2233 3334444567889999999999977543
No 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=168.68 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=100.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|.+..+...+..+++.++......... ..+ .+.||||||
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~Dt~G 87 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG-----KRV----------------KLQIWDTAG 87 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECC-----EEE----------------EEEEEECCC
Confidence 45699999999999999999998876544433333222111111100 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++|+|+|+++..+... ..++..+.. .+.|+++|+||+|+... .....+ ..+.+..
T Consensus 88 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~-~~v~~~----~~~~~~~ 162 (201)
T 2hup_A 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL-REVSLA----EAQSLAE 162 (201)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH----HHHHHHH
T ss_pred cHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc-cccCHH----HHHHHHH
Confidence 99999999999999999999999987544333 234555543 46899999999999742 111222 2333444
Q ss_pred cccc-cccccccccCcceeEEeec
Q psy6316 180 SVQT-HKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~-~~i~~Sa~~g~gv~~~l~~ 202 (259)
..++ +++++||++|.|+++++..
T Consensus 163 ~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 163 HYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp HTTCSEEEECBTTTTBSHHHHHHH
T ss_pred HcCCCEEEEEeCCCCCCHHHHHHH
Confidence 4566 7889999999999875543
No 38
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=166.95 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=103.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+.+.+........... .. .+.+|||||
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------~~~i~Dt~G 67 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE-----KV----------------KLQIWDTAG 67 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE-----EE----------------EEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE-----EE----------------EEEEEcCCC
Confidence 356999999999999999999988765544444433332221111110 01 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
++.+...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ... ......+...
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~----~~~~~~~~~~ 142 (181)
T 3tw8_B 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK-VVE----TEDAYKFAGQ 142 (181)
T ss_dssp GGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC-CSC----HHHHHHHHHH
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc-ccC----HHHHHHHHHH
Confidence 9999888889999999999999998854444432 4444444 358999999999987421 111 1223334444
Q ss_pred ccccccccccccCcceeEEee
Q psy6316 181 VQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
.+++++++||++|.|+++++.
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 143 MGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp HTCCEEECBTTTTBSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 467889999999999987543
No 39
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=1e-23 Score=182.97 Aligned_cols=169 Identities=22% Similarity=0.194 Sum_probs=104.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+|+|++......... .....+..... ............. .............+.||||||
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGY-AETNIGVCESC-KKPEAYVTEPSCK-SCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEE-EEEEEEECTTS-CTTTTEESSSCCG-GGTCCSCCEEEEEEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCc-cccceeecccc-ccccceecccccc-cccccccccccceEEEEECCC
Confidence 45599999999999999999987543321100 11111110000 0000000000000 000000001112499999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCC-CHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHHHHhhhhcc-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS- 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~- 180 (259)
|++|...+..++..+|++++|+|++++. ..+..+++..+...+. |+++|+||+|+.... ......+.+......
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~---~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE---EALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH---HHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH---HHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999986 7788888888877664 899999999997421 112222233333222
Q ss_pred --ccccccccccccCcceeE
Q psy6316 181 --VQTHKTVESARKGQEICI 198 (259)
Q Consensus 181 --~~~~~i~~Sa~~g~gv~~ 198 (259)
..++++++||++|.|+++
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~ 181 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDS 181 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHH
T ss_pred CCCCCEEEEEECCCCcChHH
Confidence 146788999999999854
No 40
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=1.1e-23 Score=164.83 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=99.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCc------ceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGG------ITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
..+|+++|.+|+|||||++.+.+.......... ...+.+........ ..+ ......+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~-----------~~~~~~~~ 77 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDI-----GEV-----------KGFKTRFH 77 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSC-----CCS-----------SSCEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccccc-----ccc-----------cCCceEEE
Confidence 355999999999999999888765432211100 00111111111000 000 00111299
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHH----Hh-----CCCCEEEEEecccccCcccccchh
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL----KS-----KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~----~~-----~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
+|||||++.+...+..+++.+|++|+|+|++++....+.+.+..+ .. .+.|+++|+||+|+... ..
T Consensus 78 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~---~~-- 152 (198)
T 3t1o_A 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA---LP-- 152 (198)
T ss_dssp EEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC---CC--
T ss_pred EEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc---cC--
Confidence 999999999999999999999999999999865444443333222 21 47899999999998642 12
Q ss_pred hHHHHHhhhhccccc-cccccccccCcceeEEee
Q psy6316 169 DVRDIIKSQESSVQT-HKTVESARKGQEICIKIE 201 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~ 201 (259)
.+.++.+....++ +++++||++|.|+++++.
T Consensus 153 --~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 153 --VEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp --HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHH
T ss_pred --HHHHHHHHHhcCCceEEEEecCCCcCHHHHHH
Confidence 2234444555667 889999999999977544
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=4.2e-24 Score=164.80 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=104.8
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||+++|++..+.....++....+. ....... ... .+.+|||
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-----~~~----------------~~~~~Dt 64 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDG-----IPA----------------RLDILDT 64 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETT-----EEE----------------EEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECC-----EEE----------------EEEEEEC
Confidence 44567999999999999999999988765544444333221 0000000 001 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHH----HhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINIL----KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~----~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+ ...+.|+++|+||+|+.... ... ......
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~v~----~~~~~~ 139 (181)
T 2fn4_A 65 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR-QVP----RSEASA 139 (181)
T ss_dssp CCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC-CSC----HHHHHH
T ss_pred CCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccC----HHHHHH
Confidence 99999988888899999999999999875443332 233333 23578999999999997421 111 122333
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+....+++++++||++|.|+++++..+
T Consensus 140 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 140 FGASHHVAYFEASAKLRLNVDEAFEQL 166 (181)
T ss_dssp HHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 334446788999999999998755433
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.1e-24 Score=164.88 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=95.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCC-CCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQD-GEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
..+|+++|.+|+|||||+++|++..+.. ...++.+.++......... ... .+.+||||
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~~~Dt~ 68 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG-----VKV----------------KLQMWDTA 68 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETT-----EEE----------------EEEEEECC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECC-----EEE----------------EEEEEeCC
Confidence 4569999999999999999999887642 2222222222111111100 001 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
|++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ....++ ...+.
T Consensus 69 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~----~~~~~ 143 (180)
T 2g6b_A 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER-VVKRED----GEKLA 143 (180)
T ss_dssp CC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC-CSCHHH----HHHHH
T ss_pred CcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc-ccCHHH----HHHHH
Confidence 999999999999999999999999987544333 234444443 578999999999997421 112222 23333
Q ss_pred ccccccccccccccCcceeEEeec
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
...+++++++||++|.|+++++..
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 144 KEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp HHHTCCEEECCTTTCTTHHHHHHH
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 344678899999999999875543
No 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=1e-24 Score=166.59 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=99.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+++|++..+.....++++.++......... ... .+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~l~D~~G~ 62 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING-----KKV----------------KLQIWDTAGQ 62 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS-----CEE----------------EEEEECCTTG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEeCCCC
Confidence 4599999999999999999998876544333333222211111110 000 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+... ... .+....+...
T Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~----~~~~~~~~~~ 136 (170)
T 1g16_A 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR--VVT----ADQGEALAKE 136 (170)
T ss_dssp GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC--CSC----HHHHHHHHHH
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC--ccC----HHHHHHHHHH
Confidence 9888888888999999999999987544333 234444443 37899999999998421 112 2223333444
Q ss_pred ccccccccccccCcceeEEee
Q psy6316 181 VQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
.+++++++||++|.|+++++.
T Consensus 137 ~~~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 137 LGIPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp HTCCEEECBTTTTBSHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 467889999999999977544
No 44
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.9e-24 Score=167.85 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=107.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|.+|+|||||+++|++..+......+++.+.......... ... .+.||||
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt 71 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG-----NKA----------------KLAIWDT 71 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT-----EEE----------------EEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC-----eEE----------------EEEEEeC
Confidence 4456799999999999999999998877655444443332211111110 001 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... ....++ ...
T Consensus 72 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~----~~~ 145 (195)
T 1x3s_A 72 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR--EVDRNE----GLK 145 (195)
T ss_dssp CSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC--CSCHHH----HHH
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc--ccCHHH----HHH
Confidence 99999998899999999999999999875443332 34455544 36899999999998521 112222 233
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+....+++++++||++|.|+++++..+
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 146 FARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 334456788999999999998866554
No 45
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.89 E-value=1.1e-23 Score=162.65 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=93.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+.....++++.+.......... .....+.+|||||
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG--------------------DKVATMQVWDTAG 67 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS--------------------SCCEEEEEECCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC--------------------CcEEEEEEEECCC
Confidence 45699999999999999999998876544433333222111111100 0001289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-------CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.........++. .
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~----~ 143 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA----Q 143 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHH----H
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHH----H
Confidence 999999999999999999999999875443332 23333332 56899999999998643222222222 2
Q ss_pred hhhc-cccccccccccccCcceeEEeec
Q psy6316 176 SQES-SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 176 ~~~~-~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.+.. ..+.+++++||++|.|+++++..
T Consensus 144 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 144 ELAKSLGDIPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp HHHHHTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCCCCCHHHHHHH
Confidence 2222 34578889999999999875543
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.4e-24 Score=170.75 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=100.5
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+++|++..+......+.+.++......... ... .+.|||||
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~i~Dt~ 85 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG-----ERT----------------VLQLWDTA 85 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETT-----EEE----------------EEEEEECT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECC-----EEE----------------EEEEEECC
Confidence 356799999999999999999998876543333333222111111110 001 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccc-cchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNT-MNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~-~~~~~~~~~~~~~ 177 (259)
|++.+...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+...... ............+
T Consensus 86 G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~ 165 (199)
T 2p5s_A 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL 165 (199)
T ss_dssp TCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH
T ss_pred CCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHH
Confidence 9999999999999999999999999875444432 34444443 37899999999998632100 0011112223334
Q ss_pred hccccccccccccccCcceeEEeec
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
....+++++++||++|.|+++++..
T Consensus 166 ~~~~~~~~~~~SA~~g~gv~el~~~ 190 (199)
T 2p5s_A 166 AMTYGALFCETSAKDGSNIVEAVLH 190 (199)
T ss_dssp HHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred HHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 4445678899999999999875543
No 47
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=3.8e-24 Score=167.21 Aligned_cols=152 Identities=17% Similarity=0.131 Sum_probs=104.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+|+|.+|+|||||+++|++..+......+++.+.......... ... .+.||||||
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G 83 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT-----AAV----------------KAQIWDTAG 83 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT-----EEE----------------EEEEEEESC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEeCCC
Confidence 45699999999999999999998877654444433322211111110 001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++|+|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ... ......+..
T Consensus 84 ~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~-~~~----~~~~~~~~~ 158 (193)
T 2oil_A 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR-EVP----TEEARMFAE 158 (193)
T ss_dssp CCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC-CSC----HHHHHHHHH
T ss_pred chhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccc-ccC----HHHHHHHHH
Confidence 99999889999999999999999987544332 335555544 368999999999997421 111 222333344
Q ss_pred cccccccccccccCcceeEEee
Q psy6316 180 SVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
..++.++++||++|.|+++++.
T Consensus 159 ~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 159 NNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp HTTCEEEEECTTTCTTHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHH
Confidence 4567889999999999977443
No 48
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=3.6e-24 Score=167.50 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=107.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+.+.+........... .+ .+.||||||
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------~~~i~Dt~G 74 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-----TI----------------KLQIWDTAG 74 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE-----EE----------------EEEEEEECC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE-----EE----------------EEEEEECCC
Confidence 356999999999999999999988776555444443332222211110 01 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ... ......+..
T Consensus 75 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~-~~~----~~~~~~~~~ 149 (196)
T 3tkl_A 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK-VVD----YTTAKEFAD 149 (196)
T ss_dssp SGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC-CSC----HHHHHHHHH
T ss_pred cHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc-ccC----HHHHHHHHH
Confidence 99999999999999999999999987544332 234444433 378999999999987431 111 122344445
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 150 ~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 150 SLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp HTTCCEEEECTTTCTTHHHHHHHH
T ss_pred HcCCcEEEEeCCCCCCHHHHHHHH
Confidence 556789999999999998855444
No 49
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=3.7e-24 Score=163.35 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=95.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|++|+|||||+|+|.+..+.....++. +....... +. +....+.+|||
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~-------t~~~~~~~-----~~-----------~~~~~l~i~Dt 57 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV-------TVEKKEGE-----FE-----------YNGEKFKVVDL 57 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC------------CCCCCEEE-----EE-----------ETTEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCc-------ceeeeEEE-----EE-----------ECCcEEEEEEC
Confidence 345679999999999999999999876532221111 11110000 00 00012999999
Q ss_pred CCCcchH------HHHHhhcc--CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 102 PGHESFS------NLRNRGSS--LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 102 pG~~~~~------~~~~~~~~--~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
||+..+. .....++. .+|++++|+|+++. .....++..+.+.+.|+++|+||+|+...... . .+
T Consensus 58 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~-~~---- 129 (165)
T 2wji_A 58 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGI-E-ID---- 129 (165)
T ss_dssp CCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTC-C-CC----
T ss_pred CCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccCh-h-hH----
Confidence 9987764 33344443 89999999999762 23344666667778999999999998632111 1 11
Q ss_pred HhhhhccccccccccccccCcceeEEeecC
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.+...++++++++||++|.|+++++..+
T Consensus 130 ~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 130 VDKLEKILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 222333345788999999999998865443
No 50
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.89 E-value=3.6e-24 Score=170.39 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=110.2
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
+.++..+|+++|.+|+|||||+++|++..+...+.++++..+... ..... ..+ .+.||
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~-----~~~----------------~l~i~ 80 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC-LETEE-----QRV----------------ELSLW 80 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEC-------CEE----------------EEEEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEE-EEECC-----EEE----------------EEEEE
Confidence 345556799999999999999999999887665555554433110 00000 001 28999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH--HHHHHHHHhC--CCCEEEEEecccccCccc-------ccchh
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT--IESINILKSK--KTPFVVALNKIDRLYNWN-------TMNRR 168 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~--~~~l~~~~~~--~~piivv~NK~D~~~~~~-------~~~~~ 168 (259)
||||++.+...+..+++.+|++|+|+|+++..+... ..++..+... +.|+++|+||+|+..... ...+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 160 (214)
T 3q3j_B 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAP 160 (214)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCC
T ss_pred ECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCc
Confidence 999999999999999999999999999998665554 3455666554 789999999999974200 00011
Q ss_pred hHHHHHhhhhccccc-cccccccccCcc-eeEEeecC
Q psy6316 169 DVRDIIKSQESSVQT-HKTVESARKGQE-ICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~i~~Sa~~g~g-v~~~l~~i 203 (259)
...+....+...+++ .++++||++|.| +++++..+
T Consensus 161 v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 161 ISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp CCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 122333444555567 788999999998 98755444
No 51
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=163.38 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=102.4
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccc-cCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTN-VQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..+..+|+++|.+|+|||||+++|++.. +......+++.... .. . +....+.||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~----~~-----~----------------~~~~~~~l~ 72 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE----KF-----K----------------SSSLSFTVF 72 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE----EE-----E----------------CSSCEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE----EE-----E----------------ECCEEEEEE
Confidence 3445679999999999999999998876 33222222221110 00 0 001139999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh------CCCCEEEEEecccccCcccccchhhHHH
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS------KKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~------~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
||||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... ...+++.+
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~ 149 (190)
T 2h57_A 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA---VTSVKVSQ 149 (190)
T ss_dssp EECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC---CCHHHHHH
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC---CCHHHHHH
Confidence 9999999999999999999999999999875433332 34444332 47899999999999742 12333443
Q ss_pred HHh-hhhccccccccccccccCcceeEEeecC
Q psy6316 173 IIK-SQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~-~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+. ......++.++++||++|.|+++++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 150 LLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HhChhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 332 1112235788899999999998755443
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=1.4e-24 Score=167.24 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=102.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|++|+|||||+++|.+..+...+.++++.+.......... .... .+.+|||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~~~----------------~~~~~Dt 63 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG----NLNV----------------TLQIWDI 63 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT----TEEE----------------EEEEEEC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC----CCEE----------------EEEEEEC
Confidence 3456699999999999999999998765322222222111101000000 0001 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-----CCCC-EEEEEecccccCcccccchhhHHHHH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-----KKTP-FVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-----~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.| +++|+||+|+.... .... +..
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~----~~~ 138 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR-TIKP----EKH 138 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC-SSCH----HHH
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc-ccCH----HHH
Confidence 99999998899999999999999999875444333 34444443 2566 78999999996421 1112 223
Q ss_pred hhhhccccccccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+....+++++++||++|.|+++++..+
T Consensus 139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 33334446788999999999998865544
No 53
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=1.8e-23 Score=162.92 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=106.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||+++|++..+......+++..+.. ... ... .+.||||
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~-----~~~----------------~~~l~Dt 74 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITK-----GNV----------------TIKLWDI 74 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE----EEE-----TTE----------------EEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE----EEe-----CCE----------------EEEEEEC
Confidence 335679999999999999999999887764443333332211 000 011 2999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ..+++...+..
T Consensus 75 ~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~ 151 (188)
T 1zd9_A 75 GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNL 151 (188)
T ss_dssp CCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTG
T ss_pred CCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhCh
Confidence 99999999899999999999999999876554443 34444432 578999999999997421 22233332221
Q ss_pred -hhccccccccccccccCcceeEEeecCC
Q psy6316 177 -QESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 177 -~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.....+++++++||++|.|+++++..+.
T Consensus 152 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 152 SAIQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 1223356788999999999988665543
No 54
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.89 E-value=1.3e-23 Score=162.58 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=103.9
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..+..+|+++|.+|+|||||+++|++..+. . ...+.+....... .. ...+.+||
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~----~~~t~~~~~~~~~-----~~----------------~~~~~i~D 71 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV-H----TSPTIGSNVEEIV-----IN----------------NTRFLMWD 71 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE-E----EECCSSSSCEEEE-----ET----------------TEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC-c----cCCcCceeeEEEE-----EC----------------CEEEEEEE
Confidence 345567999999999999999999987651 1 1111111111000 00 01299999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
|||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... ...+++.+.+.
T Consensus 72 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~ 148 (181)
T 2h17_A 72 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLK 148 (181)
T ss_dssp ESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTT
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhC
Confidence 999999998889999999999999999987665543 34444433 57899999999999742 12233333332
Q ss_pred h-hhccccccccccccccCcceeEEeecC
Q psy6316 176 S-QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~-~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
. .....++.++++||++|.|+++++..+
T Consensus 149 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 149 LTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 1 123345688899999999998866544
No 55
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=5e-24 Score=165.02 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=105.6
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.++..+|+++|.+|+|||||+|+|++..+......+.+..+. ....... ..+ .+.+||
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-----~~~----------------~l~i~D 72 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDN-----QWA----------------ILDVLD 72 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETT-----EEE----------------EEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeE-EEEEeCC-----cEE----------------EEEEEE
Confidence 344566999999999999999999988765554444433221 1111100 000 177899
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHH----HhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINIL----KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~----~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
|||++.+...+..+++.+|++++|+|+++..+.... .++..+ ...+.|+++|+||+|+... .... ....+
T Consensus 73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~v~----~~~~~ 147 (183)
T 3kkq_A 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL-RKVT----RDQGK 147 (183)
T ss_dssp CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT-CCSC----HHHHH
T ss_pred CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc-cCcC----HHHHH
Confidence 999999999899999999999999999875443322 233333 2357899999999998642 1112 22334
Q ss_pred hhhccccccccccccc-cCcceeEEeec
Q psy6316 176 SQESSVQTHKTVESAR-KGQEICIKIEP 202 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~-~g~gv~~~l~~ 202 (259)
.+...++++++++||+ +|.|+++++..
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 148 EMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp HHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred HHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 4444556889999999 99999875543
No 56
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=2.5e-24 Score=166.44 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=103.9
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+++|++..+.....++.+..+. ....... ..+ .+.+||||
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-----~~~----------------~~~l~Dt~ 62 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNG-----QEY----------------HLQLVDTA 62 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETT-----EEE----------------EEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECC-----EEE----------------EEEEEeCC
Confidence 4567999999999999999999977765554444333221 1111000 001 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHH----HhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINIL----KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~----~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|++.+...+..+++.+|++++|+|+++..+..... ++..+ ...+.|+++|+||+|+... .... ......+
T Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~----~~~~~~~ 137 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME-RVIS----YEEGKAL 137 (181)
T ss_dssp CCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT-CCSC----HHHHHHH
T ss_pred CchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc-ceec----HHHHHHH
Confidence 99999888888999999999999998754443332 33333 2347899999999998632 1112 2334444
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...++++++++||++|.|+++++..+
T Consensus 138 ~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 138 AESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp HHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred HHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 45556789999999999998866544
No 57
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=1.8e-24 Score=168.93 Aligned_cols=154 Identities=19% Similarity=0.127 Sum_probs=102.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+++|++..+......+++.+.......... ..+ .+.|||||
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~ 78 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG-----KQI----------------KLQIWDTA 78 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT-----EEE----------------EEEEECCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC-----EEE----------------EEEEEECC
Confidence 346699999999999999999998876544333333222111111100 001 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
|++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... .... ...+.+.
T Consensus 79 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~----~~~~~~~ 153 (191)
T 2a5j_A 79 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR-DVKR----EEGEAFA 153 (191)
T ss_dssp TGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCH----HHHHHHH
T ss_pred CchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc-ccCH----HHHHHHH
Confidence 999988888889999999999999987544333 234445543 378999999999996321 1112 2233344
Q ss_pred ccccccccccccccCcceeEEeec
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
...++.++++||++|.|+++++..
T Consensus 154 ~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 154 REHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp HHHTCEEEEECTTTCTTHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHH
Confidence 445678899999999999875443
No 58
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.89 E-value=1.2e-24 Score=191.44 Aligned_cols=156 Identities=23% Similarity=0.272 Sum_probs=105.0
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCH-------HHHHHHHHHHhCCCC-EEEEEecccccCcccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEP-------QTIESINILKSKKTP-FVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~-------~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~ 166 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++..+ ++.+++..+...++| +++++||+|+.. ++...
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~-~~~~~ 164 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK-WDESR 164 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT-TCHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccccc-CCHHH
Confidence 499999999999999999999999999999999876433 677777777778887 899999999973 11112
Q ss_pred hhhHHHHHhhhhcccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhc
Q psy6316 167 RRDVRDIIKSQESSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDL 241 (259)
Q Consensus 167 ~~~~~~~~~~~~~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 241 (259)
.+.+...+..+....+ ++++++||++|.|+.+.... .+++......-..... -....+++++. +..+.
T Consensus 165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~----~~~~~~~~~~~~tg~~--~~~~Ll~~l~~-~~~p~ 237 (458)
T 1f60_A 165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN----APWYKGWEKETKAGVV--KGKTLLEAIDA-IEQPS 237 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS----CTTCCCEEEECSSSEE--EESSHHHHHHT-SCCCC
T ss_pred HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc----Cchhhccccccccccc--chHHHHHHhhc-cCCCc
Confidence 2334444444433332 57889999999999875432 3333221110000000 00124444443 56677
Q ss_pred CchhhHHHHHHHHhhcc
Q psy6316 242 QKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 242 ~~~~~~~~~~i~~~~~~ 258 (259)
+..+.+++|+|+++|++
T Consensus 238 ~~~~~p~r~~i~~v~~~ 254 (458)
T 1f60_A 238 RPTDKPLRLPLQDVYKI 254 (458)
T ss_dssp CCTTSCCEEEEEEEEEE
T ss_pred ccCCCCcEEEEEEEEEe
Confidence 78889999999999874
No 59
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.89 E-value=8e-24 Score=160.59 Aligned_cols=153 Identities=20% Similarity=0.139 Sum_probs=103.3
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|.+|+|||||+++|++..+.....++....... .... ..... .+.+|||
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~----------------~~~~~D~ 58 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRK-QVVI-----DGETC----------------LLDILDT 58 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE-EEEE-----TTEEE----------------EEEEEEC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEE-EEEE-----CCEEE----------------EEEEEEC
Confidence 344569999999999999999999887654443333221110 0000 00001 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||+..+...+..++..+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+... . ........
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~--~----~~~~~~~~ 132 (166)
T 2ce2_X 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR--T----VESRQAQD 132 (166)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC--C----SCHHHHHH
T ss_pred CCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc--c----cCHHHHHH
Confidence 9999999999999999999999999987544333 234444433 37999999999998741 1 11222333
Q ss_pred hhccccccccccccccCcceeEEeec
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
+....+++++++||++|.|+++++..
T Consensus 133 ~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 133 LARSYGIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp HHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 44445678999999999999775443
No 60
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=3.2e-24 Score=187.86 Aligned_cols=145 Identities=27% Similarity=0.299 Sum_probs=103.5
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCCC-CEEEEEecccccCc-cccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKT-PFVVALNKIDRLYN-WNTM 165 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~~-piivv~NK~D~~~~-~~~~ 165 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++ +..+..+++..+...+. |+++++||+|+... ++..
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 499999999999999999999999999999999987 56677888888888886 58999999999742 1111
Q ss_pred chhhHHHHHhhhhcccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhh
Q psy6316 166 NRRDVRDIIKSQESSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDD 240 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 240 (259)
..+.+.+.+..+....+ ++++++||++|.|+.+.... .+++.+ ...++++.. +..|
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~----~~~~~g--------------~~Ll~~l~~-~~~p 225 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN----MKWYNG--------------PTLEEYLDQ-LELP 225 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS----CTTCCS--------------CCHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc----cccccc--------------hhHHHHHhc-cCCC
Confidence 22334444555444333 56889999999999875542 233221 123334433 3445
Q ss_pred cCchhhHHHHHHHHhhcc
Q psy6316 241 LQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~ 258 (259)
.+..+.+++++|+++|++
T Consensus 226 ~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 226 PKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp CCGGGSCCBEEEEEEEEE
T ss_pred CCCCCCCeEEEEEEEEEe
Confidence 566677888888888875
No 61
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=2.5e-24 Score=189.72 Aligned_cols=157 Identities=40% Similarity=0.584 Sum_probs=117.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
|+++|+++|++|+|||||+++|.+..+...+.++++.+.+...... ....++|||||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-----------------------~~~~i~~iDTP 59 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-----------------------ENGMITFLDTP 59 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-----------------------TSSCCCEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-----------------------CCEEEEEEECC
Confidence 5678999999999999999999887765555444544443322211 11239999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh---hhhc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK---SQES 179 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~---~~~~ 179 (259)
||++|..++..+++.+|++++|+|++++...++.+.+..+...++|+++++||+|+..... +.+...+. ....
T Consensus 60 Ghe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~----~~v~~~l~~~~~~~~ 135 (501)
T 1zo1_I 60 GHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP----DRVKNELSQYGILPE 135 (501)
T ss_dssp TTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC----CCTTCCCCCCCCCTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH----HHHHHHHHHhhhhHH
Confidence 9999999998999999999999999998888899999988889999999999999974211 11111111 1112
Q ss_pred cc--cccccccccccCcceeEEeecCCCC
Q psy6316 180 SV--QTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 180 ~~--~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.+ .++++++||++|.|+++++..+...
T Consensus 136 ~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 136 EWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 22 2578899999999999988887653
No 62
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2e-23 Score=162.33 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=100.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+. ...++ .+....... .. ...+.+|||||
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t----~~~~~~~~~-----~~----------------~~~~~i~Dt~G 69 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPT----IGSNVEEIV-----IN----------------NTRFLMWDIGG 69 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECC----SCSSCEEEE-----ET----------------TEEEEEEECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCC----CccceEEEE-----EC----------------CEEEEEEECCC
Confidence 456999999999999999999977653 11111 111100000 00 11299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ- 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~- 177 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... ...+++.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~ 146 (187)
T 1zj6_A 70 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTS 146 (187)
T ss_dssp ----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGG
T ss_pred CHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhh
Confidence 999988888899999999999999987665543 34444443 47899999999999742 1233344433322
Q ss_pred hccccccccccccccCcceeEEeecCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....++.++++||++|.|+++++..+.
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 147 IKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 233467889999999999988665543
No 63
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=5.3e-23 Score=157.21 Aligned_cols=150 Identities=20% Similarity=0.116 Sum_probs=102.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|.+..+... .++++... .... +....+.+|||||
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~----~~~~---------------------~~~~~~~~~Dt~G 60 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV----ETVT---------------------YKNLKFQVWDLGG 60 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE----EEEE---------------------ETTEEEEEEEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcCccce----EEEE---------------------ECCEEEEEEECCC
Confidence 45699999999999999999988766421 11111111 0000 0011299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh-hh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK-SQ 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~-~~ 177 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ...++...+. ..
T Consensus 61 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 137 (171)
T 1upt_A 61 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPA 137 (171)
T ss_dssp CGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGG
T ss_pred ChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchh
Confidence 999999999999999999999999887665543 33444332 478999999999997431 2233333332 22
Q ss_pred hccccccccccccccCcceeEEeec
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
....+++++++||++|.|+++++..
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 138 LKDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp CTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred ccCCceEEEECcCCCCcCHHHHHHH
Confidence 3334668889999999999875543
No 64
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=5.1e-24 Score=168.27 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=106.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|.+..+...+.++++.++......... ..+ .+.||||||
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 66 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG-----KTV----------------KLQIWDTAG 66 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC-----EEE----------------EEEEEeCCC
Confidence 35699999999999999999998887655444443332211111110 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .... .....+..
T Consensus 67 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~----~~~~~~~~ 141 (206)
T 2bcg_Y 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR-VVEY----DVAKEFAD 141 (206)
T ss_dssp TTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC-CSCH----HHHHHHHH
T ss_pred hHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCH----HHHHHHHH
Confidence 999988888999999999999999875544443 24444443 468999999999997421 1112 22233334
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 142 ~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 142 ANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp HTTCCEEECCTTTCTTHHHHHHHH
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 456788999999999998866554
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.89 E-value=9.7e-24 Score=166.35 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=107.1
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
+.++..+|+|+|.+|+|||||+++|++..+...+.++.+...... .... ...+ .+.||
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-----~~~~----------------~~~l~ 67 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLD-----GEEV----------------QIDIL 67 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEE-EEET-----TEEE----------------EEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEE-EEEC-----CEEE----------------EEEEE
Confidence 345567799999999999999999998876554444333222100 0000 0001 28999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
||||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....++ .
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~----~ 142 (206)
T 2bov_A 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR-QVSVEE----A 142 (206)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC-CSCHHH----H
T ss_pred cCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc-cccHHH----H
Confidence 9999999999999999999999999999875443332 23344433 378999999999987421 112222 3
Q ss_pred hhhhccccccccccccccCcceeEEeecC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+....+++++++||++|.|+++++..+
T Consensus 143 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 143 KNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 33334456788999999999998866544
No 66
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=5.4e-23 Score=156.20 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=101.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|++|+|||||+++|++..+... .++++ ..... +. .....+.+|||||++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-~~t~~----~~~~~----------~~-----------~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG----FNVET----------VE-----------YKNISFTVWDVGGQD 55 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-CCCSS----CCEEE----------EE-----------CSSCEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-cCcCc----eeEEE----------EE-----------ECCEEEEEEEcCCCh
Confidence 599999999999999999988776421 11111 00000 00 011139999999999
Q ss_pred chHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh-hhhc
Q psy6316 106 SFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK-SQES 179 (259)
Q Consensus 106 ~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~-~~~~ 179 (259)
.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ..+++...+. ....
T Consensus 56 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~ 132 (164)
T 1r8s_A 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLR 132 (164)
T ss_dssp GGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCS
T ss_pred hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCccccc
Confidence 9999999999999999999999886554433 34444433 378999999999997421 2233333222 1222
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 133 ~~~~~~~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 133 HRNWYIQATCATSGDGLYEGLDWL 156 (164)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHH
T ss_pred CccEEEEEcccCCCcCHHHHHHHH
Confidence 345678899999999998765443
No 67
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=7.1e-24 Score=169.40 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=108.8
Q ss_pred hhhhhhhhhhcCCCCcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCC
Q psy6316 4 VFNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGG 83 (259)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (259)
.|.+....+.+.+.. +.++|+++|.+|+|||||+|+|++....... ....+ ++...... ...
T Consensus 13 ~~~~~~~~~~~~~~~----~~~~i~v~G~~~~GKSslin~l~~~~~~~~~----~~~~~-~t~~~~~~-----~~~---- 74 (223)
T 4dhe_A 13 RFFTTVNHLRDLPPT----VQPEIAFAGRSNAGKSTAINVLCNQKRLAFA----SKTPG-RTQHINYF-----SVG---- 74 (223)
T ss_dssp EEEEEECSGGGSCCC----CSCEEEEEESCHHHHHHHHHHHTTCSSSSCT----TCCCC-SCCCEEEE-----EES----
T ss_pred hHHhcccchhhCCCC----CCCEEEEEcCCCCCHHHHHHHHhCCCcceee----cCCCC-cccceEEE-----Eec----
Confidence 344444455444433 2466999999999999999999987621110 10111 11111000 000
Q ss_pred CCCCCCCCCCCCeEEEeCCCCc----------chHHHHHhhcc---CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE
Q psy6316 84 EVGGPGPLEIPGLLIIDTPGHE----------SFSNLRNRGSS---LCDIAILVVDIMHGLEPQTIESINILKSKKTPFV 150 (259)
Q Consensus 84 ~~~~~~~~~~~~~~liDtpG~~----------~~~~~~~~~~~---~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii 150 (259)
......+.||||||+. .+...+..++. .+|++++|+|++++.+..+..++..+...++|++
T Consensus 75 ------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i 148 (223)
T 4dhe_A 75 ------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH 148 (223)
T ss_dssp ------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE
T ss_pred ------CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE
Confidence 0111239999999952 33444445554 4788999999999888888888888888899999
Q ss_pred EEEecccccCcccccchhhHHHHHhhhh-c------cccccccccccccCcceeEEeecC
Q psy6316 151 VALNKIDRLYNWNTMNRRDVRDIIKSQE-S------SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 151 vv~NK~D~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+|+||+|+.... ........+.+.. . ...++++++||++|.|+++++..+
T Consensus 149 ~v~nK~Dl~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 205 (223)
T 4dhe_A 149 SLLTKCDKLTRQ---ESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALI 205 (223)
T ss_dssp EEEECGGGSCHH---HHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEeccccCChh---hHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHH
Confidence 999999997421 1111222222221 1 245678899999999998866544
No 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.89 E-value=1.2e-24 Score=168.55 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=76.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+.....++++.++......... ... .+.||||||
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 66 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG-----KRI----------------KLQIWDTAG 66 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT-----EEE----------------EEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECC-----EEE----------------EEEEEcCCC
Confidence 35699999999999999999987766433333333222111111100 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .... +....+..
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~----~~~~~~~~ 141 (183)
T 2fu5_C 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR-QVSK----ERGEKLAL 141 (183)
T ss_dssp -------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC-CSCH----HHHHHHHH
T ss_pred ChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC-cCCH----HHHHHHHH
Confidence 999988888899999999999999875443333 34555544 368999999999996421 1122 22333444
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 142 ~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 142 DYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp HHTCEEEECCC---CCHHHHHHH
T ss_pred HcCCeEEEEeCCCCCCHHHHHHH
Confidence 45678899999999999875443
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.89 E-value=6.5e-24 Score=164.04 Aligned_cols=160 Identities=17% Similarity=0.142 Sum_probs=99.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|++|+|||||++++.+..+...+.+++...+... ... .+ ....+.+|||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~----------~~-----------~~~~~~i~Dt 63 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVV----------NG-----------ATVNLGLWDT 63 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCC-CC----------------------------CEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEE-EEE----------CC-----------EEEEEEEEEC
Confidence 3456699999999999999999998776443333322111100 000 00 0012789999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH--HHHHHHh--CCCCEEEEEecccccCccccc-----chhhHHH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE--SINILKS--KKTPFVVALNKIDRLYNWNTM-----NRRDVRD 172 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~--~l~~~~~--~~~piivv~NK~D~~~~~~~~-----~~~~~~~ 172 (259)
||++.+...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+....... .......
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~ 143 (182)
T 3bwd_D 64 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTV 143 (182)
T ss_dssp CC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHH
T ss_pred CCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHH
Confidence 999999988889999999999999998755544432 5555554 378999999999987421100 0000122
Q ss_pred HHhhhhccccc-cccccccccCcceeEEeecC
Q psy6316 173 IIKSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+....+. +++++||++|.|+++++..+
T Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 144 QGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 23334444454 78899999999998765443
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=4e-24 Score=169.51 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=103.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++..+......+++.++......... ..+ .+.||||||
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 78 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING-----KKV----------------KLQLWDTAG 78 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC-----EEE----------------EEEEEeCCC
Confidence 45699999999999999999998876544433333222211111110 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.. ..... .....+..
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~--~~~~~----~~~~~~~~ 152 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET--RVVTA----DQGEALAK 152 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS--CCSCH----HHHHHHHH
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc--cccCH----HHHHHHHH
Confidence 99988888889999999999999987544333 234444443 3689999999999842 11112 22233334
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 153 ~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 153 ELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp HHTCCEEECBTTTTBSSHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHH
Confidence 446788999999999998865544
No 71
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=2.1e-23 Score=163.94 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=98.6
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|++|||||||+++|.+..+.. ..++++. +.. .. .... ..+.+|||
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~----~~~---~~--~~~~----------------~~l~i~Dt 76 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP----TSE---EL--TIAG----------------MTFTTFDL 76 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC----SCE---EE--EETT----------------EEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCc----eeE---EE--EECC----------------EEEEEEEC
Confidence 345679999999999999999998776531 1111111 100 00 0000 12999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.. ....+++.+.+..
T Consensus 77 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 77 GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGL 153 (198)
T ss_dssp CC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTC
T ss_pred CCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCc
Confidence 99999988888899999999999999886555443 34444432 4789999999999974 2234444444432
Q ss_pred hh-------------ccccccccccccccCcceeEEeecCC
Q psy6316 177 QE-------------SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 177 ~~-------------~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.. ....++++++||++|.|+++++..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 21 01346788999999999988665543
No 72
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.89 E-value=1.4e-23 Score=162.69 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=104.0
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..++..+|+++|.+|+|||||+++|++..+...+..+........ ... ..... .+.||
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~l~ 71 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVL-----DGEEV----------------QIDIL 71 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEE-EEE-----TTEEE----------------EEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEE-EEE-----CCEEE----------------EEEEE
Confidence 345667799999999999999999998876544433333222110 000 00001 28999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
||||+..+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .... ...
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~----~~~ 146 (187)
T 2a9k_A 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR-QVSV----EEA 146 (187)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC-CSCH----HHH
T ss_pred ECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC-ccCH----HHH
Confidence 9999999999999999999999999999875443332 23333332 378999999999986421 1122 223
Q ss_pred hhhhccccccccccccccCcceeEEee
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
..+....+++++++||++|.|+++++.
T Consensus 147 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 147 KNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 334444567889999999999987544
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=6.5e-24 Score=167.55 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=103.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+...+..+++.+.......... ... .+.||||||
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~l~Dt~G 66 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD-----RLV----------------TMQIWDTAG 66 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS-----CEE----------------EEEEEEECS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC-----EEE----------------EEEEEeCCC
Confidence 45699999999999999999998887655444443332211111110 000 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-------CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-------KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-------~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++.+...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+... ....++ ..
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~----~~ 140 (207)
T 1vg8_A 67 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR----AQ 140 (207)
T ss_dssp SGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH----HH
T ss_pred cHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH----HH
Confidence 999888888899999999999999875443332 23333322 46899999999999721 112222 22
Q ss_pred hhhc-cccccccccccccCcceeEEeecC
Q psy6316 176 SQES-SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~-~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.. ..+++++++||++|.|+++++..+
T Consensus 141 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 141 AWCYSKNNIPYFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp HHHHHTTSCCEEECBTTTTBSHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCCCCHHHHHHHH
Confidence 2222 346788999999999998866544
No 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.7e-24 Score=169.12 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=104.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+.+.+........ .... ..+.||||||
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~----------------~~~~i~Dt~G 81 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-----HEKR----------------VKLQIWDTAG 81 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-----TTTT----------------EEEEEECHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-----CCEE----------------EEEEEEeCCC
Confidence 356999999999999999999987764433222221111111100 0000 1299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... .......+.+..
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~ 156 (191)
T 3dz8_A 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER-----VVPTEKGQLLAE 156 (191)
T ss_dssp HHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-----CSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-----ccCHHHHHHHHH
Confidence 99999999999999999999999987544332 335555544 478999999999986321 112223344444
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 157 ~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 157 QLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp HHTCEEEECBTTTTBSHHHHHHH
T ss_pred HcCCeEEEEECCCCCCHHHHHHH
Confidence 55678999999999999875543
No 75
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=3.7e-24 Score=176.51 Aligned_cols=154 Identities=20% Similarity=0.239 Sum_probs=102.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|.+|+|||||+|+|++..+..+..++. +..... ..+ .+....+.+|||
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~-------t~~~~~-----~~~-----------~~~~~~~~liDt 57 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGV-------TVERKE-----GQF-----------STTDHQVTLVDL 57 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTS-------SSEEEE-----EEE-----------ECSSCEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCe-------eEEEEE-----EEE-----------EeCCCceEEEEC
Confidence 445679999999999999999999876532221111 111100 000 011123999999
Q ss_pred CCCcchHH----------HHHhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhh
Q psy6316 102 PGHESFSN----------LRNRG--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRD 169 (259)
Q Consensus 102 pG~~~~~~----------~~~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~ 169 (259)
||+.++.. ....+ .+.+|++++|+|+++ ......+..++.+.++|+++|+||+|+.... .
T Consensus 58 pG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~------~ 129 (274)
T 3i8s_A 58 PGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQ------N 129 (274)
T ss_dssp CCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHT------T
T ss_pred cCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhh------h
Confidence 99776551 12223 279999999999987 3445667777888899999999999987321 1
Q ss_pred HHHHHhhhhccccccccccccccCcceeEEeecCCCC
Q psy6316 170 VRDIIKSQESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
.......+...++++++++||++|.|+++++..+...
T Consensus 130 ~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 130 IRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp EEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 1111233334456899999999999999977666443
No 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=161.21 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=92.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|++|+|||||+++|.+..+..... +.+.+........ ..... .+.+||||
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~----------------~~~~~D~~ 60 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTV-----DGEDT----------------TLVVVDTW 60 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEE-----TTEEE----------------EEEEECCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEE-----CCEEE----------------EEEEEecC
Confidence 34569999999999999999999876643211 1111110000000 00001 28999999
Q ss_pred CCcc--hHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC----CCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 103 GHES--FSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK----KTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 103 G~~~--~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~----~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
|+.. +......+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+.... ....+ ...
T Consensus 61 g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~-~v~~~----~~~ 135 (175)
T 2nzj_A 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCR-EVSVE----EGR 135 (175)
T ss_dssp -------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTC-CSCHH----HHH
T ss_pred CCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccc-ccCHH----HHH
Confidence 9887 556667788999999999999875444433 344555543 78999999999997431 11122 222
Q ss_pred hhhccccccccccccccCcceeEEeec
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.+....+++++++||++|.|+++++..
T Consensus 136 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 136 ACAVVFDCKFIETSATLQHNVAELFEG 162 (175)
T ss_dssp HHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 333344678899999999999875543
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.89 E-value=1.5e-23 Score=163.42 Aligned_cols=155 Identities=20% Similarity=0.146 Sum_probs=94.0
Q ss_pred cccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 19 ENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 19 ~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
.+.|+..+|+++|.+|+|||||+++|++..+......+....... .... ..... .+.|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-----~~~~~----------------~~~l 73 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVI-----DGETC----------------LLDI 73 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE-EEEE-----TTEEE----------------EEEE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEE-EEEE-----CCEEE----------------EEEE
Confidence 345777789999999999999999999877654433332221110 0000 00001 2899
Q ss_pred EeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 99 IDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 99 iDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
|||||++.+...+..+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+... ... ...
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~--~~~----~~~ 147 (190)
T 3con_A 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR--TVD----TKQ 147 (190)
T ss_dssp EECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC--CSC----HHH
T ss_pred EECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc--cCC----HHH
Confidence 999999999999999999999999999998754443332 3334333 37899999999998741 112 222
Q ss_pred HhhhhccccccccccccccCcceeEEee
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
..++....+++++++||++|.|+++++.
T Consensus 148 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 148 AHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp HHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 3334444567889999999999977443
No 78
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=7.6e-24 Score=164.12 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=106.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|.+|+|||||+++|++..+...+.++........ ... ....+ .+.+|||
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~i~Dt 60 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMV-----DGKPV----------------NLGLWDT 60 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEE-EEE-----TTEEE----------------EEEEECC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEE-EEE-----CCEEE----------------EEEEEEC
Confidence 4556799999999999999999998776544433333222110 000 00011 2889999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccc-------hhhH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMN-------RRDV 170 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~-------~~~~ 170 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+........ ....
T Consensus 61 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 140 (186)
T 1mh1_A 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 140 (186)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred CCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCC
Confidence 99999988888899999999999999876555444 355555543 799999999999974311000 0001
Q ss_pred HHHHhhhhccccc-cccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
......+....+. +++++||++|.|+++++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 141 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 1122233333444 78899999999998865544
No 79
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=2.2e-23 Score=157.80 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=99.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|.+|+|||||+++|.+..+... .....++......... .....+.+|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~ 59 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV------ADVPGVTRDLKEGVVE----------------TDRGRFLLVDTGGL 59 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------CCEEEEEE----------------ETTEEEEEEECGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec------cCCCCceecceEEEEE----------------eCCceEEEEECCCC
Confidence 4699999999999999999998764211 0111111111100000 00112999999998
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
.. +...+..+++.+|++++|+|++++.+.....+...+...+.|+++|+||+|+... . ....++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~----~~~~~~ 130 (161)
T 2dyk_A 60 WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH-----E----LYLGPL 130 (161)
T ss_dssp CSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG-----G----GGCGGG
T ss_pred CCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc-----h----HhHHHH
Confidence 76 4556677889999999999999888877777777777788999999999999742 1 112223
Q ss_pred hccccc-cccccccccCcceeEEeecC
Q psy6316 178 ESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
. ..+. +++++||++|.|+++++..+
T Consensus 131 ~-~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 131 Y-GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp G-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred H-hCCCCCeEEEecccCCChHHHHHHH
Confidence 3 3445 78899999999998865543
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.4e-23 Score=160.36 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=103.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++..+......+.+...... ... ..... .+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~~~Dt~G~ 61 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISC-----DKSIC----------------TLQITDTTGS 61 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE-EEE-----TTEEE----------------EEEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE-EEE-----CCEEE----------------EEEEEECCCc
Confidence 4599999999999999999998776544333333222110 000 00000 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh-----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS-----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
.++...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+..... ... .....+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~-v~~----~~~~~~~ 136 (172)
T 2erx_A 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE-VQS----SEAEALA 136 (172)
T ss_dssp SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC-SCH----HHHHHHH
T ss_pred hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc-cCH----HHHHHHH
Confidence 9999999999999999999999987543332 234444433 3689999999999874311 111 1222333
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+++++++||++|.|+++++..+.
T Consensus 137 ~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 137 RTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp HHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 34467889999999999988766554
No 81
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=2.7e-24 Score=191.00 Aligned_cols=158 Identities=38% Similarity=0.530 Sum_probs=117.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
|+++|+++|++|+|||||+++|.+..+...+.++++..++........ ...++|||||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~----------------------g~~i~~iDTP 60 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS----------------------GEKITFLDTP 60 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC----------------------SSCCBCEECS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC----------------------CCEEEEEECC
Confidence 467899999999999999999998876555544454444333222110 1139999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
||+.|..++..+++.+|++|+|+|++++..+++.+.+..+...++|+++++||+|+...........+ .........+
T Consensus 61 Ghe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l-~~~~~~~e~~~ 139 (537)
T 3izy_P 61 GHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKEL-LAYDVVCEDYG 139 (537)
T ss_dssp SSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHH-HHTTSCCCCSS
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHH-HhhhhhHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999743221112222 1121122222
Q ss_pred -cccccccccccCcceeEEeecC
Q psy6316 182 -QTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 182 -~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++++++||++|.|+++++..+
T Consensus 140 ~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 140 GDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp SSEEECCCCSSSSCSSHHHHHHH
T ss_pred CCceEEEEECCCCCCchhHHHHH
Confidence 3578899999999998866544
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.88 E-value=4.4e-23 Score=160.16 Aligned_cols=151 Identities=20% Similarity=0.150 Sum_probs=102.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++.. .....++++.... .... .. ..+.+|||||
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~----~~~~-----~~----------------~~~~~~Dt~G 71 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK----TLEH-----RG----------------FKLNIWDVGG 71 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE----EEEE-----TT----------------EEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE----EEEE-----CC----------------EEEEEEECCC
Confidence 4569999999999999999999876 3222222221111 0000 00 1299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh-h
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS-Q 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~-~ 177 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ..+++.+.+.. .
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 148 (186)
T 1ksh_A 72 QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL---SCNAIQEALELDS 148 (186)
T ss_dssp SHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGG
T ss_pred CHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC---CHHHHHHHhChhh
Confidence 999998888999999999999999886655443 34444433 478999999999997431 22333333221 1
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+++++++||++|.|+++++..+
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 149 IRSHHWRIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred ccCCceEEEEeeCCCCCCHHHHHHHH
Confidence 22345688899999999998755433
No 83
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=3.5e-23 Score=179.98 Aligned_cols=201 Identities=21% Similarity=0.237 Sum_probs=113.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc---CCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCC-CCCCeEEE
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV---QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPL-EIPGLLII 99 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li 99 (259)
..+|+++|++++|||||+++|++... .....++++...+..............+ ............+ ....+.||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y-~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTY-TTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCE-ESSSBCTTSCCBCEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccc-cccccccccCcccccccEEEEE
Confidence 35699999999999999999986532 1222222222222111111000000000 0000000000000 01239999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-CHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|||||++|...+...+..+|++|+|+|++++. ..+..+++..+...+. |+++++||+|+..... .....+.+..+
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~---~~~~~~~i~~~ 163 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ---AEENYEQIKEF 163 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT---TTTHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH---HHHHHHHHHHH
Confidence 99999999999999999999999999999886 7888888887777665 7999999999975321 11222223333
Q ss_pred hcc---ccccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHHHHHHHH
Q psy6316 178 ESS---VQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMVDLKK 254 (259)
Q Consensus 178 ~~~---~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 254 (259)
... ..++++++||++|.|++++ ++.+.+.+..+.++.+.+++++|++
T Consensus 164 l~~~~~~~~~~i~vSA~~g~gi~~L------------------------------~~~l~~~i~~~~~~~~~~~~~~v~~ 213 (408)
T 1s0u_A 164 VKGTIAENAPIIPISAHHEANIDVL------------------------------LKAIQDFIPTPKRDPDATPRMYVAR 213 (408)
T ss_dssp HTTSTTTTCCEEEC------CHHHH------------------------------HHHHHHHSCCCCCCTTSCCEEEEEE
T ss_pred HhhcCCCCCeEEEeeCCCCCCHHHH------------------------------HHHHHHhCCCCcccCCCCeEEEEEE
Confidence 222 2568889999999988543 2333333445555556666667766
Q ss_pred hhcc
Q psy6316 255 VFQI 258 (259)
Q Consensus 255 ~~~~ 258 (259)
+|+|
T Consensus 214 ~f~v 217 (408)
T 1s0u_A 214 SFDI 217 (408)
T ss_dssp EECC
T ss_pred EEee
Confidence 6654
No 84
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=2.6e-23 Score=161.54 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=101.8
Q ss_pred CcccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeE
Q psy6316 18 DENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLL 97 (259)
Q Consensus 18 ~~~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (259)
....++..+|+++|.+|+|||||++++++..+...+..+.. .+. ..... ....+ .+.
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~-~~~~~-----~~~~~----------------~l~ 70 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVV-----DGQSY----------------LLL 70 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEE-EEEEE-----TTEEE----------------EEE
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEE-EEEEE-----CCEEE----------------EEE
Confidence 33456677899999999999999999998877554433311 110 00000 00011 188
Q ss_pred EEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcc-cccchhhHH
Q psy6316 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNW-NTMNRRDVR 171 (259)
Q Consensus 98 liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~-~~~~~~~~~ 171 (259)
+|||||++.+. +++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... .....++
T Consensus 71 i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~-- 143 (184)
T 3ihw_A 71 IRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSR-- 143 (184)
T ss_dssp EEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHH--
T ss_pred EEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHH--
Confidence 99999998876 6778999999999998665555 446666655 368999999999985321 1122222
Q ss_pred HHHhhhhcccc-ccccccccccCcceeEEeec
Q psy6316 172 DIIKSQESSVQ-THKTVESARKGQEICIKIEP 202 (259)
Q Consensus 172 ~~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~ 202 (259)
...+....+ +.++++||++|.|+++++..
T Consensus 144 --~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 144 --ARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp --HHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred --HHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 333333343 67889999999999875543
No 85
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.88 E-value=3.7e-24 Score=174.72 Aligned_cols=151 Identities=22% Similarity=0.164 Sum_probs=102.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|.+|+|||||+|+|++.....+..++.+.+. ...... +....+.||||||+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~-------~~~~~~----------------~~~~~~~lvDtpG~ 58 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK-------KTGEFL----------------LGEHLIEITDLPGV 58 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEE-------EEEEEE----------------ETTEEEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEE-------EEEEEE----------------ECCeEEEEEeCCCc
Confidence 4799999999999999999998765322222211111 000000 01112999999998
Q ss_pred cchHH----------HHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 105 ESFSN----------LRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 105 ~~~~~----------~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
..+.. ....++ ..+|++++|+|+++ ......+..++.+.++|+++|+||+|+..... ...
T Consensus 59 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~------~~~ 130 (256)
T 3iby_A 59 YSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRG------ISI 130 (256)
T ss_dssp SSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTT------CEE
T ss_pred ccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCC------cHH
Confidence 76653 344455 88999999999987 34456677788888999999999999874211 111
Q ss_pred HHhhhhccccccccccccccCcceeEEeecCCCC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
....+...++++++++||++|.|+++++..+...
T Consensus 131 ~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 131 DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 1223334446899999999999999987766544
No 86
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.88 E-value=1.3e-23 Score=163.26 Aligned_cols=151 Identities=20% Similarity=0.146 Sum_probs=100.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++..+.....++........ .... .... .+.+|||||+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-----~~~~----------------~~~i~Dt~G~ 62 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVID-----GETC----------------LLDILDTAGQ 62 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEE-EEET-----TEEE----------------EEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEE-EEEC-----CcEE----------------EEEEEECCCc
Confidence 4599999999999999999998876544433332111100 0000 0000 1789999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.+...+..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+... .........+..
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------~~~~~~~~~~~~ 136 (189)
T 4dsu_A 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR------TVDTKQAQDLAR 136 (189)
T ss_dssp ---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC------SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc------ccCHHHHHHHHH
Confidence 999999999999999999999998754433322 3333333 47899999999999732 122233344444
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 137 ~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 137 SYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHH
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 556789999999999998855433
No 87
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.88 E-value=1.1e-23 Score=164.10 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=100.9
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..+..+|+++|.+|+|||||+++|++..+...+.++++..+... ... ....+ .+.|||
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~l~i~D 75 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-ETV-----DHQPV----------------HLRVMD 75 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEE-EEE-----TTEEE----------------EEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEE-EEE-----CCEEE----------------EEEEEE
Confidence 34556799999999999999999998887655544444332110 000 00011 289999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh------CCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS------KKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~------~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
|||++.+... ..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... .... +.
T Consensus 76 t~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~v~~----~~ 149 (187)
T 3c5c_A 76 TADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR-QVTK----AE 149 (187)
T ss_dssp CCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC-SSCH----HH
T ss_pred CCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC-ccCH----HH
Confidence 9998887664 56889999999999998754444332 4444443 479999999999996321 1122 22
Q ss_pred Hhhhhcccccccccccc-ccCcceeEEeec
Q psy6316 174 IKSQESSVQTHKTVESA-RKGQEICIKIEP 202 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa-~~g~gv~~~l~~ 202 (259)
...+....++.++++|| ++|.|+++++..
T Consensus 150 ~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 150 GVALAGRFGCLFFEVSACLDFEHVQHVFHE 179 (187)
T ss_dssp HHHHHHHHTCEEEECCSSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeecCccccHHHHHHH
Confidence 33344445678899999 899999875543
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.88 E-value=5.5e-23 Score=160.52 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=102.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|++|+|||||+++|.+..+.. ..++++... ... .... ..+.+||||
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~~----~~~-----~~~~----------------~~~~i~Dt~ 75 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS----EEL-----AIGN----------------IKFTTFDLG 75 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCEE----EEE-----EETT----------------EEEEEEECC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCCe----EEE-----EECC----------------EEEEEEECC
Confidence 34569999999999999999999876532 111121111 000 0000 129999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.. ....+++.+.+...
T Consensus 76 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~ 152 (190)
T 1m2o_B 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLL 152 (190)
T ss_dssp CSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCc
Confidence 9999988888899999999999999987655443 34444432 5789999999999974 12333444433322
Q ss_pred h--------ccccccccccccccCcceeEEeecC
Q psy6316 178 E--------SSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~--------~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
. ...+++++++||++|.|+++++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 153 NTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp SCCC---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 1 2235678899999999998866544
No 89
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.88 E-value=1.7e-23 Score=165.99 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=105.5
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+++|.+..+...+.++++..+... ... ....+ .+.|||||
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~i~Dt~ 65 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAV-----DGQIV----------------NLGLWDTA 65 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEE-EEC-----SSCEE----------------EEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEE-EEE-----CCEEE----------------EEEEEECC
Confidence 456799999999999999999998876544433333221100 000 00001 29999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCccccc---chhhHHHHHh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTM---NRRDVRDIIK 175 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~---~~~~~~~~~~ 175 (259)
|++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+....... ..........
T Consensus 66 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~ 145 (212)
T 2j0v_A 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGE 145 (212)
T ss_dssp CCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHH
T ss_pred CcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHH
Confidence 9999999999999999999999999876554443 355555553 79999999999987421100 0000122233
Q ss_pred hhhccccc-cccccccccCcceeEEeecCC
Q psy6316 176 SQESSVQT-HKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 176 ~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
.+...++. +++++||++|.|+++++..+.
T Consensus 146 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 146 ELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp HHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 33444454 788999999999998766553
No 90
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=7.5e-24 Score=167.16 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=75.8
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc--ccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT--NVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
.+..+|+++|.+|+|||||+++|++. .+.....++.+.+............ ... .+.||
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---~~~----------------~~~l~ 78 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT---VSV----------------ELFLL 78 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSS---EEE----------------EEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc---cEE----------------EEEEE
Confidence 34567999999999999999999887 5433332222211111111110000 001 29999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh------CCCCEEEEEecccccCcccccchhhHHH
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS------KKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~------~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
||||++.+...+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.........+
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~---- 154 (208)
T 2yc2_C 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD---- 154 (208)
T ss_dssp ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH----
T ss_pred ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH----
Confidence 999999999999999999999999999987654433 335555544 478999999999997411111222
Q ss_pred HHhhhhcccccccccccccc-CcceeEEeecC
Q psy6316 173 IIKSQESSVQTHKTVESARK-GQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~-g~gv~~~l~~i 203 (259)
....+....+++++++||++ |.|+++++..+
T Consensus 155 ~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 155 MAQDWATTNTLDFFDVSANPPGKDADAPFLSI 186 (208)
T ss_dssp HHHHHHHHTTCEEEECCC-------CHHHHHH
T ss_pred HHHHHHHHcCCEEEEeccCCCCcCHHHHHHHH
Confidence 23334444567889999999 99998855443
No 91
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=2.4e-23 Score=158.49 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=83.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|.+....... ...+ .+. .. ......... .+.+|||||+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~----~~~-~~-~~~~~~~~~----------------~~~i~D~~g~ 59 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAG----HTY-DR-SIVVDGEEA----------------SLMVYDIWEQ 59 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC---------------CEE-EE-EEEETTEEE----------------EEEEEECC--
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCC-Cccc----cce-EE-EEEECCEEE----------------EEEEEECCCC
Confidence 35999999999999999999876543211 1111 111 00 000000011 2899999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
+.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ... ......+..
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~----~~~~~~~~~ 134 (166)
T 3q72_A 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR-EVS----VDEGRACAV 134 (166)
T ss_dssp -------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC-CSC----HHHHHHHHH
T ss_pred ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc-ccC----HHHHHHHHH
Confidence 99999999999999999999999875444333 34444443 368999999999987431 111 222333444
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 135 ~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 135 VFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp HTTCEEEECBGGGTBSHHHHHHH
T ss_pred HhCCcEEEeccCCCCCHHHHHHH
Confidence 45678899999999999875543
No 92
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.88 E-value=1.6e-23 Score=164.94 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=103.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|.+..+...+.++.+..+... ... ....+ .+.||||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~l~i~Dt~G 82 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEV-----DGKQV----------------ELALWDTAG 82 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEE-----TTEEE----------------EEEEECCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEE-----CCEEE----------------EEEEEECCC
Confidence 36799999999999999999998877544433333222100 000 00001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccc-------hhhHHH
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMN-------RRDVRD 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~-------~~~~~~ 172 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+........ ......
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 162 (201)
T 2gco_A 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSE 162 (201)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHH
T ss_pred chhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHH
Confidence 999998888999999999999999875444443 355555543 799999999999974311000 000111
Q ss_pred HHhhhhccccc-cccccccccCcceeEEeec
Q psy6316 173 IIKSQESSVQT-HKTVESARKGQEICIKIEP 202 (259)
Q Consensus 173 ~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~ 202 (259)
....+....+. .++++||++|.|+++++..
T Consensus 163 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 193 (201)
T 2gco_A 163 EGRDMANRISAFGYLECSAKTKEGVREVFEM 193 (201)
T ss_dssp HHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEeeCCCCCCHHHHHHH
Confidence 22233333344 6789999999999875543
No 93
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=9.9e-24 Score=161.07 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=90.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+++|.+.........+.+.+........ ..... .+.+|||||+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------------~~~i~D~~g~ 61 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-----DKEEV----------------TLIVYDIWEQ 61 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-----TTEEE----------------EEEEECCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-----CCeEE----------------EEEEEECCCc
Confidence 35999999999999999999876543322221111111000000 00001 2889999999
Q ss_pred cchHH-HHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 105 ESFSN-LRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 105 ~~~~~-~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
+.+.. .+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... . .........+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~----~~~~~~~~~~~ 136 (169)
T 3q85_A 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-R----EVSLEEGRHLA 136 (169)
T ss_dssp --------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG-C----CSCHHHHHHHH
T ss_pred cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc-c----cCCHHHHHHHH
Confidence 88876 566677889999999999875443332 34444433 37899999999998632 1 11223334444
Q ss_pred ccccccccccccccCcceeEEeec
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
...+++++++||++|.|+++++..
T Consensus 137 ~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 137 GTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp HHTTCEEEECBTTTTBSHHHHHHH
T ss_pred HHcCCcEEEecCccCCCHHHHHHH
Confidence 555678899999999999875543
No 94
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=1.7e-23 Score=165.27 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=105.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|.+|+|||||+++|++..+...+.++....+... ..... ..+ .+.||||
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~-----~~~----------------~l~i~Dt 85 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDG-----KPV----------------NLGLWDT 85 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEE-EECC------CEE----------------EEEEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEE-EEECC-----EEE----------------EEEEEEC
Confidence 4456699999999999999999998777554444333222111 00000 000 1779999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccch-------hhH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMNR-------RDV 170 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~-------~~~ 170 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+......... ...
T Consensus 86 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 165 (204)
T 4gzl_A 86 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 165 (204)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred CCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcccccccc
Confidence 99999999999999999999999999886555554 355555554 7999999999999743110000 001
Q ss_pred HHHHhhhhccccc-cccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
......+....+. +++++||++|.|+++++..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 166 YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 1122233333343 58899999999998866544
No 95
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.6e-24 Score=169.19 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=101.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+|+|++|+|||||+++|++..+...+..+++.++......... ..+ .+.||||||
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G 71 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG-----KRI----------------KAQIWDTAG 71 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC-----EEE----------------EEEEEECCC
Confidence 35699999999999999999998877544433333222111111100 001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ....+ ....+..
T Consensus 72 ~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~~----~~~~~~~ 146 (223)
T 3cpj_B 72 QERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR-AVPTE----ESKTFAQ 146 (223)
T ss_dssp TTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC-CSCHH----HHHHHHH
T ss_pred ccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-ccCHH----HHHHHHH
Confidence 999988888999999999999999876554443 34455544 368999999999997421 11222 2333334
Q ss_pred cccccccccccccCcceeEEeecCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
..+++++++||++|.|+++++..+.
T Consensus 147 ~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 147 ENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp HTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4567888999999999998765553
No 96
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=2e-23 Score=180.85 Aligned_cols=195 Identities=24% Similarity=0.234 Sum_probs=130.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCC----------cceeeccccccCccccccccccccCCCCCCCCCCCCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAG----------GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIP 94 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (259)
.+|+++|++|+|||||+++|++.....+... ......+.+.. .... .+ .....
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~-~~~~-----~~-----------~~~~~ 66 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN-AAHV-----EY-----------STAAR 66 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE-CEEE-----EE-----------ECSSC
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEE-eeeE-----Ee-----------ccCCe
Confidence 4599999999999999999987421111000 00000010000 0000 00 01112
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++...+..+++..+...++| +++++||+|+.... ...+.+...
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~~~ 144 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVELE 144 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHHHH
Confidence 399999999999999999999999999999999999999999999888888999 68999999997421 011222233
Q ss_pred Hhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchhhHH
Q psy6316 174 IKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQL 248 (259)
Q Consensus 174 ~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 248 (259)
+..+.... .++++++||++|.|.. ..++ ...-+.+.++.+.++++.+.+..+.+|
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~--------~~~~------------~~g~i~~Ll~~l~~~~p~p~~~~~~p~ 204 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQR--------DPEL------------GLKSVQKLLDAVDTYIPVPTRDLEKPF 204 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTC--------CTTT------------THHHHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred HHHHHHHcCCCcccCcEEEeehhhccccc--------CCCc------------cCCcHHHHHHHHHHhCCCCCCCCCCcE
Confidence 33333333 2578899999988721 1111 111135667777777888888888999
Q ss_pred HHHHHHhhcc
Q psy6316 249 MVDLKKVFQI 258 (259)
Q Consensus 249 ~~~i~~~~~~ 258 (259)
+++|+++|++
T Consensus 205 ~~~v~~v~~~ 214 (397)
T 1d2e_A 205 LLPVESVYSI 214 (397)
T ss_dssp EEECCEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999998874
No 97
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.6e-23 Score=162.63 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=104.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+...+.++....+.. .... ....+ .+.+|||||
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~-----~~~~~----------------~~~i~D~~G 75 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTV-----GGKQY----------------LLGLYDTAG 75 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEE-EEES-----SSCEE----------------EEEEECCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEE-EEEE-----CCEEE----------------EEEEEECCC
Confidence 4579999999999999999999887654443333222110 0000 00001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCccccc-------chhhHHH
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTM-------NRRDVRD 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~-------~~~~~~~ 172 (259)
++++...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+....... .+....+
T Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVE 155 (194)
T ss_dssp SSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHH
T ss_pred CcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHH
Confidence 999998888999999999999999876554443 355666554 79999999999997431000 0001112
Q ss_pred HHhhhhccccc-cccccccccCcceeEEeec
Q psy6316 173 IIKSQESSVQT-HKTVESARKGQEICIKIEP 202 (259)
Q Consensus 173 ~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~ 202 (259)
....+....+. +++++||++|.|+++++..
T Consensus 156 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 156 QGQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp HHHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 22333333444 7889999999999875543
No 98
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.88 E-value=7.8e-24 Score=168.64 Aligned_cols=155 Identities=16% Similarity=0.225 Sum_probs=103.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+|+|++..+......+.+... ............+ .+.+|||||
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~----------------~~~l~Dt~G 70 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN----HPVTFLDDQGNVI----------------KFNVWDTAG 70 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE----EEEEEEBTTSCEE----------------EEEEEEECS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee----EEEEEEeCCCcEE----------------EEEEEecCC
Confidence 45699999999999999999997766432222222111 1110000000001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHH---hCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILK---SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~---~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..++..+|++|+|+|+++..+..+. .++..+. ..+.|+++|+||+|+... ..........+..
T Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~ 145 (218)
T 4djt_A 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR-----QKISKKLVMEVLK 145 (218)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC---------CCHHHHHHHTT
T ss_pred chhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-----cccCHHHHHHHHH
Confidence 998888888889999999999999886554443 2334443 346899999999998742 1122233445555
Q ss_pred cccccccccccccCcceeEEeecC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+++++++||++|.|+++++..+
T Consensus 146 ~~~~~~~~~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 146 GKNYEYFEISAKTAHNFGLPFLHL 169 (218)
T ss_dssp TCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred HcCCcEEEEecCCCCCHHHHHHHH
Confidence 667889999999999999866554
No 99
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=3.8e-23 Score=179.91 Aligned_cols=173 Identities=24% Similarity=0.223 Sum_probs=105.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccC---CCCCCcceeeccccccCccccccccccccCCCCCCCCCCCC-CCCCeEEE
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQ---DGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPL-EIPGLLII 99 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li 99 (259)
..+|+++|++|+|||||+++|++.... ....++++...+.............. .............+ ....+.||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~-y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGR-YSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCC-EESSSBCTTTCCBCEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeeccccccccc-ccccccccccCcccccccEEEEE
Confidence 356999999999999999999865321 11112222222211111100000000 00000000000000 01239999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-CHHHHHHHHHHHhCCC-CEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQTIESINILKSKKT-PFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~~~~l~~~~~~~~-piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|||||++|...+...+..+|++|+|+|++++. ..+..+++..+...+. |+++++||+|+.... ...+..+.+..+
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~---~~~~~~~~i~~~ 165 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE---KALENYRQIKEF 165 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH---HHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH---HHHHHHHHHHHH
Confidence 99999999999999999999999999999886 7888888877776664 789999999997421 111222333333
Q ss_pred hcc---ccccccccccccCcceeEEe
Q psy6316 178 ESS---VQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 178 ~~~---~~~~~i~~Sa~~g~gv~~~l 200 (259)
... ..++++++||++|.|++.++
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~ 191 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLV 191 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHH
Confidence 322 35688899999999986533
No 100
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=5.5e-24 Score=167.49 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=97.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+++.+.......... ... .+.||||||
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~----------------~l~l~Dt~G 83 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG-----KTV----------------KLQIWDTAG 83 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECC-----eee----------------EEEEEcCCC
Confidence 45699999999999999999998876544433333222111111100 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+.... .....+ ...+..
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~v~~~~----~~~~~~ 158 (200)
T 2o52_A 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER-EVTFLE----ASRFAQ 158 (200)
T ss_dssp HHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC-CSCHHH----HHHHHH
T ss_pred cHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc-ccCHHH----HHHHHH
Confidence 988887788889999999999999875443332 34444433 478999999999986321 111222 233334
Q ss_pred cccccccccccccCcceeEEeec
Q psy6316 180 SVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+++++++||++|.|+++++..
T Consensus 159 ~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 159 ENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp HTTCEEEEECTTTCTTHHHHHHH
T ss_pred HcCCEEEEEeCCCCCCHHHHHHH
Confidence 45678899999999999875543
No 101
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=2.2e-23 Score=187.87 Aligned_cols=135 Identities=53% Similarity=0.843 Sum_probs=96.6
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccc-cCCCCCCCCCCCCCCCCeEEE
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHV-RGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li 99 (259)
.+|+++|+++|++|+|||||+++|++..+.....++++.+.+....+........... .... ..+....++||
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~------v~~~~~~i~li 75 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFS------IRETLPGLFFI 75 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCG------GGGTCCEEEEE
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccc------cccccCCEEEE
Confidence 3678899999999999999999999877655444344444443333221100000000 0000 01112239999
Q ss_pred eCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 100 DTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 100 DtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
|||||.+|..++..+++.+|++|+|+|++++...++.+.+..+...++|+++++||+|+...
T Consensus 76 DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~ 137 (594)
T 1g7s_A 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG 137 (594)
T ss_dssp CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTT
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccc
Confidence 99999999998888899999999999999999999999999999999999999999999753
No 102
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.88 E-value=1.1e-23 Score=167.77 Aligned_cols=162 Identities=19% Similarity=0.133 Sum_probs=103.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+......+++.++............... ........+.||||||
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~l~Dt~G 93 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS-----------SGKAFKVHLQLWDTAG 93 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC------------------CCEEEEEEEEEEEES
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCcccccc-----------ccCceeEEEEEEECCC
Confidence 35699999999999999999998876433323332222111111110000000 0000011299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
++.+...+..+++.+|++|+|+|+++..+..... ++..+.. .+.|+++|+||+|+.... ... ....+.+.
T Consensus 94 ~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~----~~~~~~~~ 168 (217)
T 2f7s_A 94 QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR-EVN----ERQARELA 168 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC-CSC----HHHHHHHH
T ss_pred cHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc-ccC----HHHHHHHH
Confidence 9999999999999999999999998754443332 3443433 468999999999986421 111 22333444
Q ss_pred ccccccccccccccCcceeEEee
Q psy6316 179 SSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
...+++++++||++|.|+++++.
T Consensus 169 ~~~~~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 169 DKYGIPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp HHTTCCEEEEBTTTTBTHHHHHH
T ss_pred HHCCCcEEEEECCCCCCHHHHHH
Confidence 44567889999999999987543
No 103
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=8.6e-24 Score=174.18 Aligned_cols=152 Identities=20% Similarity=0.206 Sum_probs=102.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
|+..+|+++|++|+|||||+|+|++..+..+..++.+......... +....+.+|||
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~-----------------------~~~~~~~l~Dt 57 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIME-----------------------YREKEFLVVDL 57 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEE-----------------------ETTEEEEEEEC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEE-----------------------ECCceEEEEeC
Confidence 4556799999999999999999998765322222222111100000 01112899999
Q ss_pred CCCcchHH------HHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCC-CCEEEEEecccccCcccccchhhHHH
Q psy6316 102 PGHESFSN------LRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKK-TPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 102 pG~~~~~~------~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~-~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
||+..+.. ....++ ..+|++++|+|+++. .....++.++.+.+ .|+++|+||+|+...... ..
T Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------~~ 129 (271)
T 3k53_A 58 PGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGA------KI 129 (271)
T ss_dssp CCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTC------CC
T ss_pred CCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCccccc------HH
Confidence 99776554 344444 689999999999873 45566677777777 999999999998632111 11
Q ss_pred HHhhhhccccccccccccccCcceeEEeecCC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....+...++++++++||++|.|+++++..+.
T Consensus 130 ~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 130 DIKKMRKELGVPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHH
Confidence 12333344568899999999999998766553
No 104
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.5e-23 Score=165.82 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=101.6
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|.+|+|||||+++|++..+...+.++.+..+... ... ..... .+.||||
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~i~Dt 80 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEV-----DGKQV----------------ELALWDT 80 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEE-----TTEEE----------------EEEEEEC
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEE-----CCEEE----------------EEEEEEC
Confidence 4456799999999999999999998876544333332221100 000 00001 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccc-------hhhH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMN-------RRDV 170 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~-------~~~~ 170 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+........ ....
T Consensus 81 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 160 (207)
T 2fv8_A 81 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVR 160 (207)
T ss_dssp TTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred CCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCC
Confidence 99999988888899999999999999875444433 355555543 799999999999974210000 0000
Q ss_pred HHHHhhhhccccc-cccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
......+....+. .++++||++|.|+++++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 161 TDDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHH
Confidence 1111222223344 67899999999998865544
No 105
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=163.28 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=98.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|.+.........+.+.+........ ....+ .+.+|||||
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------------~l~i~Dt~g 81 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-----DKEEV----------------TLVVYDIWE 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-----TTEEE----------------EEEEECCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-----CCEEE----------------EEEEEecCC
Confidence 456999999999999999999755432111111111100000000 00001 288999999
Q ss_pred CcchHH-HHHhhccCCCeEEEEEeCCCCCCHHH-HHHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 104 HESFSN-LRNRGSSLCDIAILVVDIMHGLEPQT-IESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 104 ~~~~~~-~~~~~~~~ad~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
++.+.. ++..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.... ....++ .+.+
T Consensus 82 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~v~~~~----~~~~ 156 (195)
T 3cbq_A 82 QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR-EVSLEE----GRHL 156 (195)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTC-CSCHHH----HHHH
T ss_pred CccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccC-CcCHHH----HHHH
Confidence 988765 66777899999999999987544333 234444543 378999999999996421 112222 2333
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+++++++||++|.|+++++..+
T Consensus 157 a~~~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 157 AGTLSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp HHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred HHHhCCEEEEEcCCCCCCHHHHHHHH
Confidence 44445788999999999998866544
No 106
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.88 E-value=9.3e-24 Score=186.29 Aligned_cols=146 Identities=20% Similarity=0.306 Sum_probs=90.1
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-------CHHHHHHHHHHHhCCCC-EEEEEecccccCc-cccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-------EPQTIESINILKSKKTP-FVVALNKIDRLYN-WNTM 165 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~-~~~~ 165 (259)
.+.|||||||++|...+..+++.+|++|+|+|++++. ..+..+++..+...++| +++++||+|+... ++..
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~ 201 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 201 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHH
Confidence 4999999999999999999999999999999999864 24677788888888998 9999999999631 1111
Q ss_pred chhhHHHHHhhhhccc-------cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHH
Q psy6316 166 NRRDVRDIIKSQESSV-------QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFR 238 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~-------~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 238 (259)
..+.+...+..+.... .++++++||++|.|+.+++.. ...+|+.+. . .++.++. ++
T Consensus 202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~--~~~~w~~g~------~--------L~~~l~~-i~ 264 (467)
T 1r5b_A 202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS--SVCPWYQGP------S--------LLEYLDS-MT 264 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT--TTCSSCCSC------C--------HHHHHHH-CC
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccccc--ccCccccch------h--------HHHHHHh-CC
Confidence 2233333444443332 466889999999999886632 123443221 0 1222322 44
Q ss_pred hhcCchhhHHHHHHHHhhc
Q psy6316 239 DDLQKTDWQLMVDLKKVFQ 257 (259)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~~ 257 (259)
.+.+..+.+|+++|+++|+
T Consensus 265 ~~~~~~~~p~~~~v~~~~~ 283 (467)
T 1r5b_A 265 HLERKVNAPFIMPIASKYK 283 (467)
T ss_dssp CCHHHHTSCCEEECCEEEE
T ss_pred CCcCCCCCCcEEEEEEEEe
Confidence 4555567788888888775
No 107
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.5e-23 Score=163.15 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=103.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+...+..+++..+... ... ..... .+.||||||
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~l~Dt~G 65 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV-ISC-----DKSVC----------------TLQITDTTG 65 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEE-EEE-----TTEEE----------------EEEEEECCG
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEE-EEE-----CCEEE----------------EEEEEeCCC
Confidence 34599999999999999999998776544433333222110 000 00001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh-----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS-----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
+..+...+..++..+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... .... .....+
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~----~~~~~~ 139 (199)
T 2gf0_A 66 SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDT----REAQAV 139 (199)
T ss_dssp GGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCH----HHHHHH
T ss_pred hHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCH----HHHHHH
Confidence 999999999999999999999999874333322 23333322 36899999999998741 1111 222333
Q ss_pred hccccccccccccccCcceeEEeecCCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
...++++++++||++|.|+++++..+..
T Consensus 140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 140 AQEWKCAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence 3444678899999999999987766643
No 108
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=1.5e-22 Score=156.73 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=102.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|.+..+. ....+.+........ .. ..+.+|||||
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~-----~~~~t~g~~~~~~~~-----~~----------------~~l~i~Dt~G 69 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS-----HITPTQGFNIKSVQS-----QG----------------FKLNVWDIGG 69 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE-----EEEEETTEEEEEEEE-----TT----------------EEEEEEECSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-----cccCcCCeEEEEEEE-----CC----------------EEEEEEECCC
Confidence 356999999999999999999876542 112222211111000 01 1299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhh-h
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS-Q 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~-~ 177 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+. ..+.|+++|+||+|+.... ..+++.+.+.. .
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~ 146 (181)
T 1fzq_A 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHT 146 (181)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchh
Confidence 999999999999999999999999876555443 3444332 2478999999999997431 22233332221 1
Q ss_pred hccccccccccccccCcceeEEeecCC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
....+++++++||++|.|+++++..+.
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 147 IRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 123356788999999999988665543
No 109
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=2.1e-23 Score=170.45 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=101.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+|+|++..+..+..++.+ ....... +. .....+.|||||
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~t-------v~~~~~~-----~~-----------~~~~~~~l~Dtp 60 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVT-------VEKKEGV-----FT-----------YKGYTINLIDLP 60 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSC-------CEEEEEE-----EE-----------ETTEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCce-------EEEEEEE-----EE-----------ECCeEEEEEECC
Confidence 346799999999999999999998765322222111 1110000 00 001129999999
Q ss_pred CCcchHH------HHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 103 GHESFSN------LRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 103 G~~~~~~------~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
|+..+.. ....++ ..+|++++|+|+++ ......++.++.+.+.|+++|+||+|+...... . ...
T Consensus 61 G~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~--~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i-~-----~~~ 132 (258)
T 3a1s_A 61 GTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN--PEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM-K-----IDR 132 (258)
T ss_dssp CCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS--CHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC-C-----BCH
T ss_pred CcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc--hhhHHHHHHHHHhcCCCEEEEEECcCCCCccch-H-----HHH
Confidence 9876543 223343 68999999999987 344556778888889999999999998632111 1 112
Q ss_pred hhhhccccccccccccccCcceeEEeecCCC
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+...++++++++||++|.|+++++..+..
T Consensus 133 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 133 YELQKHLGIPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp HHHHHHHCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeeCCcCHHHHHHHHHH
Confidence 3334445689999999999999997766543
No 110
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.3e-23 Score=190.28 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=100.5
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC-------CCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~-------~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~ 166 (259)
.++|||||||++|...+..+++.+|++|+|+|++++ ...+..+++..+...++| +|+|+||+|+.. +....
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~-~~~~~ 324 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-WSQQR 324 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT-TCHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc-hhHHH
Confidence 499999999999999999999999999999999874 356778888888888866 999999999974 22222
Q ss_pred hhhHHHHHhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHh--
Q psy6316 167 RRDVRDIIKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRD-- 239 (259)
Q Consensus 167 ~~~~~~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-- 239 (259)
.+++...+..+.... .++++++||++|.|+.++.... ...+|+.+.. + .+.++.+....+.
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~-~~~~Wy~g~~-------L----~~~L~~l~~~~p~~~ 392 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTD-EVRQWYNGPN-------L----MSTLENAAFKISKEN 392 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSC-TTCCSCCSCC-------H----HHHHTTSCCCCCCSS
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccc-cccccccCCc-------H----HHHHHHHhhcccccC
Confidence 333444444443322 3578899999999998753211 1123332211 1 1112111111111
Q ss_pred hcCchhhHHHHHHHHhhcc
Q psy6316 240 DLQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~~ 258 (259)
+.+..+.||+|+|+++|++
T Consensus 393 p~~~~~~p~r~~V~~v~~~ 411 (611)
T 3izq_1 393 EGINKDDPFLFSVLEIIPS 411 (611)
T ss_dssp SCCSCCSCCEEECCEEECC
T ss_pred cccccccchhhheeeeecc
Confidence 3456788889999888875
No 111
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3.4e-24 Score=169.08 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=107.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+++|++..+...+.++........ ... .+ ....+.+||||
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~----------~~-----------~~~~l~i~Dt~ 86 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMV----------DG-----------KPVNLGLWDTA 86 (204)
Confidence 345599999999999999999987766433322222111100 000 00 00127799999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccc-------hhhHH
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMN-------RRDVR 171 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~-------~~~~~ 171 (259)
|++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+........ .....
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166 (204)
Confidence 9999999999999999999999999886655554 355555544 789999999999974311000 01111
Q ss_pred HHHhhhhccccc-cccccccccCcceeEEeecCCC
Q psy6316 172 DIIKSQESSVQT-HKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 172 ~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.....+....+. +++++||++|.|+++++..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 223334444455 7889999999999998877654
No 112
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=4.8e-23 Score=163.85 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=87.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||+++|++..+...+.++....+... ... ....+ .+.||||
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~l~l~Dt 89 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQV-----KGKPV----------------HLHIWDT 89 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEE-EEE-----TTEEE----------------EEEEEEC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEE-EEE-----CCEEE----------------EEEEEEC
Confidence 3456799999999999999999998776443333332211100 000 00001 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccccc-------hhhH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNTMN-------RRDV 170 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~~~-------~~~~ 170 (259)
||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+........ ....
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 169 (214)
T 2j1l_A 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVT 169 (214)
T ss_dssp ---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCC
T ss_pred CCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCccc
Confidence 99999999999999999999999999875554443 24555544 3789999999999974311000 0001
Q ss_pred HHHHhhhhccccc-cccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
......+....+. +++++||++|.|+++++..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 170 YHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 1122333444455 78899999999998755433
No 113
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1e-22 Score=178.53 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=106.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|||||||+|+|++.... .......++......... +....+.||||||
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~------~~~~~~gtT~d~~~~~~~----------------~~~~~~~l~DT~G 232 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERV------IVSNVAGTTRDAVDTSFT----------------YNQQEFVIVDTAG 232 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTE------EEC---------CCEEEE----------------ETTEEEEETTHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCce------eecCCCCceeeeeEEEEE----------------ECCeEEEEEECCC
Confidence 457999999999999999999987642 111111122211110000 0111299999999
Q ss_pred C----------cchHHHHH-hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 104 H----------ESFSNLRN-RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 104 ~----------~~~~~~~~-~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
+ +.|..... .+++.+|++++|+|++++.+.++..++..+...+.|+++|+||+|+.... ....++..+
T Consensus 233 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~ 311 (436)
T 2hjg_A 233 MRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKD-ESTMKEFEE 311 (436)
T ss_dssp HTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCC-TTHHHHHHH
T ss_pred cCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcc-hHHHHHHHH
Confidence 7 44554433 47789999999999999999999999888888899999999999997432 112233333
Q ss_pred HHhhhhc-cccccccccccccCcceeEEeecC
Q psy6316 173 IIKSQES-SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~-~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.+... ....+++++||++|.|+++++..+
T Consensus 312 ~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 312 NIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp HHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred HHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 3333322 234678899999999999876554
No 114
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=1e-22 Score=158.57 Aligned_cols=150 Identities=18% Similarity=0.140 Sum_probs=100.4
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|.+..+... .+++ +..... +. +....+.+|||||
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~----~~~~~~----------~~-----------~~~~~~~~~Dt~G 75 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTV----GVNLET----------LQ-----------YKNISFEVWDLGG 75 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEEE-CSST----TCCEEE----------EE-----------ETTEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCc-CCCC----ceEEEE----------EE-----------ECCEEEEEEECCC
Confidence 45699999999999999999987654311 1111 100000 00 0011299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh-hh
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK-SQ 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~-~~ 177 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ..+++...+. ..
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 152 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSS 152 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGG
T ss_pred CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhh
Confidence 998888888889999999999999887665543 34444433 378999999999997431 2233333332 12
Q ss_pred hccccccccccccccCcceeEEeec
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
....+++++++||++|.|+++++..
T Consensus 153 ~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 153 IMNRTWTIVKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ccCCceEEEEccCCCccCHHHHHHH
Confidence 2334567889999999999875543
No 115
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.87 E-value=6.7e-23 Score=157.92 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=95.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|.+|+|||||+++|++..+.. +.++++..+. ..... ....+ .+.+|||
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~-----~~~~~----------------~l~i~Dt 61 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLV-----DGQTH----------------LVLIREE 61 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEE-EEEEE-----TTEEE----------------EEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEE-EEEEE-----CCEEE----------------EEEEEEC
Confidence 455679999999999999999999887754 2222221110 00000 00001 2899999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHH----HHHHHh---CCCCEEEEEecccccCc-ccccchhhHHHH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIES----INILKS---KKTPFVVALNKIDRLYN-WNTMNRRDVRDI 173 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~----l~~~~~---~~~piivv~NK~D~~~~-~~~~~~~~~~~~ 173 (259)
||++. ..+++.+|++++|+|+++..+...... +..+.. .+.|+++|+||+|+... ......++.
T Consensus 62 ~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~--- 133 (178)
T 2iwr_A 62 AGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA--- 133 (178)
T ss_dssp SSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH---
T ss_pred CCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH---
Confidence 99886 346678999999999987655544432 222332 36899999999998521 111122222
Q ss_pred Hhhhhccc-cccccccccccCcceeEEeec
Q psy6316 174 IKSQESSV-QTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 174 ~~~~~~~~-~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
..+.... +++++++||++|.|+++++..
T Consensus 134 -~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 134 -RALXADMKRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp -HHHHHHHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred -HHHHHhhcCCeEEEEeccccCCHHHHHHH
Confidence 2232222 578899999999999875543
No 116
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.87 E-value=4.4e-23 Score=162.19 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=99.2
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||+++|++..+...+.++....+... ... ....+ .+.||||
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~i~Dt 75 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAV-VSV-----DGRPV----------------RLQLCDT 75 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEE-EEE-----TTEEE----------------EEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEE-EEE-----CCEEE----------------EEEEEEC
Confidence 3456799999999999999999998776544333332221100 000 00001 1889999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccc-------cchhhH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNT-------MNRRDV 170 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~-------~~~~~~ 170 (259)
||++.+...+..++..+|++++|+|+++..+.... .++..+... +.|+++|+||+|+...... ......
T Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 155 (201)
T 2q3h_A 76 AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVP 155 (201)
T ss_dssp CCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred CCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCC
Confidence 99999988888899999999999999876555543 355555543 7899999999999742100 000111
Q ss_pred HHHHhhhhccccc-cccccccccCcceeEEeec
Q psy6316 171 RDIIKSQESSVQT-HKTVESARKGQEICIKIEP 202 (259)
Q Consensus 171 ~~~~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~ 202 (259)
......+....+. +++++||++|.|+++++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 188 (201)
T 2q3h_A 156 EEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188 (201)
T ss_dssp HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHH
Confidence 1223333333344 7889999999999875543
No 117
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=1.2e-24 Score=171.15 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=99.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+|+|++..+......+.+.+.......... ..+ .+.||||||
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------~~~i~Dt~G 91 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-----KTI----------------KLQIWDTAG 91 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETT-----EEE----------------EEEEECCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECC-----EEE----------------EEEEEECCC
Confidence 45699999999999999999987765432222222111111111100 001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhC---CCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKSK---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~---~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
++.+...+..+++.+|++++|+|+++..+.... .++..+... +.|+++|+||+|+.... .....+ ...+..
T Consensus 92 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~-~v~~~~----~~~~~~ 166 (199)
T 3l0i_B 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK-VVDYTT----AKEFAD 166 (199)
T ss_dssp CTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--C-CCCSCC-----CHHHH
T ss_pred cHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccc-cCCHHH----HHHHHH
Confidence 999988888899999999999999886554443 344555443 68999999999986431 111111 233344
Q ss_pred cccccccccccccCcceeEEeecCCCCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~~~ 207 (259)
..+++++++||++|.|+++++..+....
T Consensus 167 ~~~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 167 SLGIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp TTTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999877765543
No 118
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=9.4e-23 Score=159.79 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=101.3
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+++|++..+...+.++.+..+... .... .... .+.|||||
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~-----~~~~----------------~~~l~Dt~ 84 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATID-----DEVV----------------SMEILDTA 84 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEET-----TEEE----------------EEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEE-EEEC-----CEEE----------------EEEEEECC
Confidence 346699999999999999999998877655444443222100 0000 0001 28999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|++. ...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+... .....++ ...+
T Consensus 85 G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-~~v~~~~----~~~~ 158 (196)
T 2atv_A 85 GQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS-RQVSTEE----GEKL 158 (196)
T ss_dssp CCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG-CCSCHHH----HHHH
T ss_pred CCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc-cccCHHH----HHHH
Confidence 9887 67788888999999999999875443322 23333332 57899999999999742 1112222 2333
Q ss_pred hccccccccccccccCc-ceeEEee
Q psy6316 178 ESSVQTHKTVESARKGQ-EICIKIE 201 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~-gv~~~l~ 201 (259)
....+++++++||++|. |+++++.
T Consensus 159 ~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 159 ATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp HHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred HHHhCCeEEEECCCcCCcCHHHHHH
Confidence 33446788999999999 9877544
No 119
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=7e-24 Score=169.38 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=103.9
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.++..+|+++|.+|+|||||+++++...+......+.+.+......... .... .+.|||
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~----------------~~~i~D 70 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGPI----------------KFNVWD 70 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-----TEEE----------------EEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-----CEEE----------------EEEEEe
Confidence 3445679999999999999999976655433222222222211111110 0011 299999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|||++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+..... .. ....+
T Consensus 71 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~----~~~~~ 143 (221)
T 3gj0_A 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KA----KSIVF 143 (221)
T ss_dssp ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS---CG----GGCCH
T ss_pred CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc---cH----HHHHH
Confidence 999999888888899999999999999875444333 34444444 3789999999999874321 11 12233
Q ss_pred hccccccccccccccCcceeEEeecC
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....++.++++||++|.|+++++..+
T Consensus 144 ~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 144 HRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp HHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 33446788999999999999866555
No 120
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=8.2e-23 Score=158.06 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=96.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++..+. ...++++ ...... . +....+.+|||||
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~----~~~~~~-----~----------------~~~~~~~i~Dt~G 71 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG----FNVETL-----S----------------YKNLKLNVWDLGG 71 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTT----CCEEEE-----E----------------ETTEEEEEEEEC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCc----cceEEE-----E----------------ECCEEEEEEECCC
Confidence 456999999999999999999876551 1111111 110000 0 0001299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhhh-
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ- 177 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~- 177 (259)
+..+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ..+++.+.+...
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~ 148 (183)
T 1moz_A 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL---SASEVSKELNLVE 148 (183)
T ss_dssp ---CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC---CHHHHHHHTTTTT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC---CHHHHHHHhCccc
Confidence 998888888999999999999999887665543 34444432 568999999999987421 223333333221
Q ss_pred hccccccccccccccCcceeEEee
Q psy6316 178 ESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 178 ~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
....+++++++||++|.|+++++.
T Consensus 149 ~~~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 149 LKDRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp CCSSCEEEEEEBGGGTBTHHHHHH
T ss_pred ccCCceEEEEccCCCCcCHHHHHH
Confidence 122356788999999999987544
No 121
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.87 E-value=6.6e-23 Score=159.08 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=103.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|.+..+...+.+++....... ... ....+ .+.+|||||
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-----~~~~~----------------~~~i~Dt~G 64 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEI-----DTQRI----------------ELSLWDTSG 64 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEC-----SSCEE----------------EEEEEEECC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-EEE-----CCEEE----------------EEEEEECCC
Confidence 45699999999999999999998877554444443322110 000 00001 289999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccc-------cchhhHHH
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNT-------MNRRDVRD 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~-------~~~~~~~~ 172 (259)
++.|...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+...... .......+
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 144 (184)
T 1m7b_A 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYD 144 (184)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred ChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHH
Confidence 999988888899999999999999876554443 34455544 47899999999999742100 00001112
Q ss_pred HHhhhhcccc-ccccccccc-cCcceeEEeec
Q psy6316 173 IIKSQESSVQ-THKTVESAR-KGQEICIKIEP 202 (259)
Q Consensus 173 ~~~~~~~~~~-~~~i~~Sa~-~g~gv~~~l~~ 202 (259)
....+....+ .+++++||+ +|.|+++++..
T Consensus 145 ~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 145 QGANMAKQIGAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp HHHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeeecCCCcCHHHHHHH
Confidence 2333333334 578899999 68999875543
No 122
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=2e-22 Score=157.55 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=97.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|++|+|||||+++|++..+... ..+.+...... ... ...+.+||||
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~-----~~~----------------~~~~~i~Dt~ 81 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-----EYK----------------NICFTVWDVG 81 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEE-----EET----------------TEEEEEEECC
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEE-----EEC----------------CEEEEEEECC
Confidence 346699999999999999999987665311 11111110000 000 1129999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh-
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS- 176 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~- 176 (259)
|++.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++|+||+|+.... ..+++...+..
T Consensus 82 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~ 158 (192)
T 2b6h_A 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQ 158 (192)
T ss_dssp -----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGG
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcc
Confidence 9999988888899999999999999886554443 34444433 378999999999996421 22333333221
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.....+++++++||++|.|+++++..+
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHH
Confidence 122335678899999999998865443
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=8.2e-23 Score=167.98 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=99.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++.....+..++. +...... .+. . ...+.+|||||+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~-------tv~~~~~-----~~~-----------~-~~~l~l~DtpG~ 59 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV-------TVERKSG-----LVK-----------K-NKDLEIQDLPGI 59 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC-------CCSCEEE-----ECT-----------T-CTTEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC-------cEEEEEE-----EEe-----------c-CCeEEEEECCCc
Confidence 469999999999999999999876433222211 1111000 000 0 113999999998
Q ss_pred cchH------HHHHhhcc--CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFS------NLRNRGSS--LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~------~~~~~~~~--~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
..+. .....++. .+|++++|+|+++. .....+..++.+.+.|+++|+||+|+...... ......
T Consensus 60 ~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~------~~~~~~ 131 (272)
T 3b1v_A 60 YSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGK------KINVDK 131 (272)
T ss_dssp SCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTC------CCCHHH
T ss_pred CccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCc------HHHHHH
Confidence 7764 34444553 69999999999872 33455667777789999999999998632111 111223
Q ss_pred hhccccccccccccccCcceeEEeecCCC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
+...++++++++||++|.|+++++..+..
T Consensus 132 l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 132 LSYHLGVPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp HHHHHTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEccCCCCHHHHHHHHHH
Confidence 33344688999999999999997765543
No 124
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=5.7e-22 Score=159.11 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=97.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+.++|+++|.+|+|||||+|+|++..+... ....++......... .....+.|||||
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~-------~~~~~t~~~~~~~~~----------------~~~~~~~l~Dtp 84 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQ-------SYSFTTKNLYVGHFD----------------HKLNKYQIIDTP 84 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEE-------CC-----CEEEEEEE----------------ETTEEEEEEECT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccC-------CCCCcceeeeeeeee----------------cCCCeEEEEECC
Confidence 346799999999999999999988765311 111111111110000 001129999999
Q ss_pred CC------cch---HHHHHhhccCCCeEEEEEeCCCCCCH---HHHHHHHHHHhC--CCCEEEEEecccccCcccccchh
Q psy6316 103 GH------ESF---SNLRNRGSSLCDIAILVVDIMHGLEP---QTIESINILKSK--KTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 103 G~------~~~---~~~~~~~~~~ad~~i~v~d~~~~~~~---~~~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~ 168 (259)
|+ +.. ...+..++..+|++|+|+|+++..+. ....++..+... +.|+++|+||+|+...... ..
T Consensus 85 G~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~--~~ 162 (228)
T 2qu8_A 85 GLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL--SI 162 (228)
T ss_dssp TTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC--CH
T ss_pred CCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh--HH
Confidence 98 331 12233456889999999999886553 234566667665 8999999999999743211 11
Q ss_pred hHHHHHhhhhcccc--ccccccccccCcceeEEeecC
Q psy6316 169 DVRDIIKSQESSVQ--THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~--~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.....++.+....+ ++++++||++|.|+++++..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 199 (228)
T 2qu8_A 163 DNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199 (228)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHH
Confidence 22223444444444 688899999999998855443
No 125
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=2.8e-22 Score=171.55 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=103.1
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.|+ +|+++|++|+|||||+++|+.. +++.+.+..... .....++|||
T Consensus 20 ~m~--~i~iiG~~d~GKSTL~~~L~~~--------giTi~~~~~~~~-----------------------~~~~~i~iiD 66 (370)
T 2elf_A 20 HMA--NVAIIGTEKSGRTSLAANLGKK--------GTSSDITMYNND-----------------------KEGRNMVFVD 66 (370)
T ss_dssp CEE--EEEEEESTTSSHHHHHHTTSEE--------EEESSSEEEEEC-----------------------SSSSEEEEEE
T ss_pred cCC--EEEEECCCCCCHHHHHHHHHhC--------CEEEEeeEEEEe-----------------------cCCeEEEEEE
Confidence 354 7999999999999999999711 122222211111 1111399999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE-EEEEe-cccccCcccccchhhHHHHHhhhh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPF-VVALN-KIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi-ivv~N-K~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
||||++|...+..+++.+|++|+|+| +.+...+..+++..+...++|. ++++| |+|+ ... ..+...+.++.+.
T Consensus 67 tPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~---~~~~~~~~i~~~l 141 (370)
T 2elf_A 67 AHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMH---AIDELKAKLKVIT 141 (370)
T ss_dssp CTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHH---HHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHH---HHHHHHHHHHHHH
Confidence 99999999999999999999999999 8888999999999999899998 99999 9998 421 1122334444444
Q ss_pred ccc---cccccc--ccccc---CcceeE
Q psy6316 179 SSV---QTHKTV--ESARK---GQEICI 198 (259)
Q Consensus 179 ~~~---~~~~i~--~Sa~~---g~gv~~ 198 (259)
... .+++++ +||++ |.|+++
T Consensus 142 ~~~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 142 SGTVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp TTSTTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred HhcCCCceEEEecccccccCcCCCCHHH
Confidence 332 367889 99999 777755
No 126
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-22 Score=160.87 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=104.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+++|++..+...+.+++...+.. ..... ...+ .+.||||||
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~-----~~~~----------------~l~i~Dt~G 85 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEID-----TQRI----------------ELSLWDTSG 85 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEESS-----SSEE----------------EEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE-EEEEC-----CEEE----------------EEEEEeCCC
Confidence 4679999999999999999999988765544444332211 00000 0001 299999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHh--CCCCEEEEEecccccCcccc-------cchhhHHH
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKS--KKTPFVVALNKIDRLYNWNT-------MNRRDVRD 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~piivv~NK~D~~~~~~~-------~~~~~~~~ 172 (259)
++.|...+..+++.+|++|+|+|+++..+.... .++..+.. .+.|+++|+||+|+...... .......+
T Consensus 86 ~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 165 (205)
T 1gwn_A 86 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYD 165 (205)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred cHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHH
Confidence 999988888899999999999999876554443 34455554 47899999999999742100 00001112
Q ss_pred HHhhhhcccc-ccccccccc-cCcceeEEeec
Q psy6316 173 IIKSQESSVQ-THKTVESAR-KGQEICIKIEP 202 (259)
Q Consensus 173 ~~~~~~~~~~-~~~i~~Sa~-~g~gv~~~l~~ 202 (259)
..+.+....+ +.++++||+ +|.|+++++..
T Consensus 166 ~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 166 QGANMAKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 2333333334 578899999 68899875543
No 127
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=5.4e-23 Score=159.82 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=98.7
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.|+..+|+++|++|||||||+++|++..+.....++. +....... +. +....+.+||
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~-------t~~~~~~~-----~~-----------~~~~~~~l~D 60 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV-------TVEKKEGE-----FE-----------YNGEKFKVVD 60 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTS-------CCEEEEEE-----EE-----------ETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCe-------eccceEEE-----EE-----------eCCcEEEEEE
Confidence 4566789999999999999999998765421111111 11100000 00 0011299999
Q ss_pred CCCCcchH------HHHHhhcc--CCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 101 TPGHESFS------NLRNRGSS--LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 101 tpG~~~~~------~~~~~~~~--~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
|||+..+. ..+..++. .+|++++|+|+++ ......++..+...+.|+++|+||+|+...... ..
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------~~ 132 (188)
T 2wjg_A 61 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGI------EI 132 (188)
T ss_dssp CCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC------CC
T ss_pred CCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccc------hH
Confidence 99987763 33444553 5999999999875 233455667777788999999999998632111 01
Q ss_pred HHhhhhccccccccccccccCcceeEEeecC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+.+...++++++++||++|.|+++++..+
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 133 DVDKLEKILGVKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp CHHHHHHHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEecCCCCHHHHHHHH
Confidence 1233333445788999999999998866554
No 128
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=4.6e-24 Score=192.81 Aligned_cols=146 Identities=24% Similarity=0.268 Sum_probs=92.8
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-------CHHHHHHHHHHHhCCCC-EEEEEecccccCcccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-------EPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMN 166 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-------~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~ 166 (259)
.++|||||||.+|...+..++..+|++|+|+|++++. ..+..+++..+...++| +|+|+||+|+.. +....
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~-~~~~~ 334 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS-WSEDR 334 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT-TCHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc-ccHHH
Confidence 4999999999999988888999999999999998753 77888898888889987 899999999874 11222
Q ss_pred hhhHHHHHhhhh-cccc-----ccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhh
Q psy6316 167 RRDVRDIIKSQE-SSVQ-----THKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDD 240 (259)
Q Consensus 167 ~~~~~~~~~~~~-~~~~-----~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 240 (259)
...+...+..+. ...+ ++++++||++|.|+.+.... ...+|+.+ ...++.+.+.. .+
T Consensus 335 ~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~--~~~~w~~g--------------~~Lle~l~~~~-pp 397 (592)
T 3mca_A 335 FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS--DLYKWYKG--------------PTLLSALDQLV-PP 397 (592)
T ss_dssp HHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCC--GGGGTCCS--------------CCHHHHHHTSC-CC
T ss_pred HHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccc--ccccccch--------------HHHHHHHHhhc-cc
Confidence 333444455444 3333 46889999999999763211 01222211 02333333322 25
Q ss_pred cCchhhHHHHHHHHhhcc
Q psy6316 241 LQKTDWQLMVDLKKVFQI 258 (259)
Q Consensus 241 ~~~~~~~~~~~i~~~~~~ 258 (259)
.+..+.+|+++|+++|++
T Consensus 398 ~~~~~~p~r~~v~~v~~~ 415 (592)
T 3mca_A 398 EKPYRKPLRLSIDDVYRS 415 (592)
T ss_dssp SCTTTSCCEEEEEEEEEE
T ss_pred cccccccchheeeEEEec
Confidence 667788888998888864
No 129
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.86 E-value=8e-22 Score=156.50 Aligned_cols=114 Identities=26% Similarity=0.298 Sum_probs=75.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++..+...+.+ ....... .... +. ....+.+|||||
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~----------~~----------~~~~~~i~Dt~G 63 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVN----------NN----------RGNSLTLIDLPG 63 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECS----------ST----------TCCEEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEec----------CC----------CccEEEEEECCC
Confidence 45699999999999999999998776433321 1111111 0000 00 011299999999
Q ss_pred CcchHH-HHHhhccCCCeEEEEEeCCCCCC--HHHHHHHHH-HH-----hCCCCEEEEEecccccC
Q psy6316 104 HESFSN-LRNRGSSLCDIAILVVDIMHGLE--PQTIESINI-LK-----SKKTPFVVALNKIDRLY 160 (259)
Q Consensus 104 ~~~~~~-~~~~~~~~ad~~i~v~d~~~~~~--~~~~~~l~~-~~-----~~~~piivv~NK~D~~~ 160 (259)
++.+.. ++..+++.+|++++|+|+++... .....++.. +. ..+.|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred ChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 999988 77888999999999999976211 111222222 21 23689999999999974
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=7.6e-22 Score=173.87 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=110.5
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+++|.+|+|||||+|+|++.... .......++......... .....+.|||||
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~------~~~~~~gtt~~~~~~~~~----------------~~~~~~~l~DT~ 251 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERV------IVSNVAGTTRDAVDTSFT----------------YNQQEFVIVDTA 251 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE------EECC------CTTSEEEE----------------ETTEEEEETTGG
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCcc------ccCCCCCeEEEEEEEEEE----------------ECCceEEEEECC
Confidence 3466999999999999999999876531 111111122211111000 011129999999
Q ss_pred C----------CcchHHHHH-hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHH
Q psy6316 103 G----------HESFSNLRN-RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 103 G----------~~~~~~~~~-~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
| ++.|..... .+++.+|++|+|+|++++...++..++..+.+.++|+++|+||+|+... .....++..
T Consensus 252 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~~~~~~~~ 330 (456)
T 4dcu_A 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK-DESTMKEFE 330 (456)
T ss_dssp GTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC-CSSHHHHHH
T ss_pred CCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC-chHHHHHHH
Confidence 9 666766544 4778999999999999999999999999999999999999999999743 222334455
Q ss_pred HHHhhhhccc-cccccccccccCcceeEEeecCC
Q psy6316 172 DIIKSQESSV-QTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 172 ~~~~~~~~~~-~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+.++...... ..+++++||++|.|+++++..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 331 ENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp HHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred HHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 5555544333 35788999999999998766553
No 131
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.86 E-value=4e-22 Score=156.28 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=96.4
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+++|.+|+|||||++++.+..... .+.+... +...... .+. ......+.+|||
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~--~~~~~~~------~~~----------~~~~~~l~i~Dt 76 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLES--TNKIYKD------DIS----------NSSFVNFQIWDF 76 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCC--CCSCEEE------EEC----------CTTSCCEEEEEC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeecc--ccceeee------ecc----------CCCeeEEEEEEC
Confidence 345669999999999999999887643211 1111111 0000000 000 001113999999
Q ss_pred CCCcchHHHH---HhhccCCCeEEEEEeCCCCCCHHHHH---HHHHH--HhCCCCEEEEEecccccCccccc-chhhH-H
Q psy6316 102 PGHESFSNLR---NRGSSLCDIAILVVDIMHGLEPQTIE---SINIL--KSKKTPFVVALNKIDRLYNWNTM-NRRDV-R 171 (259)
Q Consensus 102 pG~~~~~~~~---~~~~~~ad~~i~v~d~~~~~~~~~~~---~l~~~--~~~~~piivv~NK~D~~~~~~~~-~~~~~-~ 171 (259)
||++.|.... ..+++.+|++|+|+|+++........ ++..+ ...+.|+++|+||+|+....... ....+ .
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~ 156 (196)
T 3llu_A 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ 156 (196)
T ss_dssp CSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred CCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHH
Confidence 9999987766 78889999999999998862222222 23333 22478999999999987421100 01111 1
Q ss_pred HHHhhhhc----cccccccccccccCcceeEEeecC
Q psy6316 172 DIIKSQES----SVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 172 ~~~~~~~~----~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
...+.+.. ..++.++++||++ .|+++++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 157 RANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp HHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 12223333 4567889999999 9998765443
No 132
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=1.8e-21 Score=162.32 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=89.7
Q ss_pred CeEEEeCCCCc-------------chHHHHHhhccCCCeEE-EEEeCCCCCCHHHH-HHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHE-------------SFSNLRNRGSSLCDIAI-LVVDIMHGLEPQTI-ESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~-------------~~~~~~~~~~~~ad~~i-~v~d~~~~~~~~~~-~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++||||||+. .+...+..+++.++.++ +|+|++.+....+. .++..+...+.|+++|+||+|+.
T Consensus 126 ~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~ 205 (299)
T 2aka_B 126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM 205 (299)
T ss_dssp SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGS
T ss_pred CceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccC
Confidence 49999999953 35566777888888776 79999887666654 46777777789999999999997
Q ss_pred CcccccchhhHHHHHhhhhcc--cc-ccccccccccCcceeEEeecCCCCCCcccccCC---cchh---hHHHHhhhhhH
Q psy6316 160 YNWNTMNRRDVRDIIKSQESS--VQ-THKTVESARKGQEICIKIEPIPGEAPKMFGRHF---DEND---FLVSKISRQSI 230 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~---~~~~---~~~~~~~~e~~ 230 (259)
.... .....++..... .+ .+++++||++|.|+++++..+..+.++++.... .+.+ +.+.+++++++
T Consensus 206 ~~~~-----~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l 280 (299)
T 2aka_B 206 DEGT-----DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 280 (299)
T ss_dssp CTTC-----CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred CCCc-----hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHH
Confidence 4321 112223221111 12 367789999999999988887766666554332 1233 66777777766
No 133
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=4.7e-22 Score=187.12 Aligned_cols=196 Identities=23% Similarity=0.200 Sum_probs=128.7
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCC----------cceeeccccccCccccccccccccCCCCCCCCCCCC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAG----------GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPL 91 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (259)
....+|+++|++|+|||||+++|++.....+... ......+.+... ... .+ ..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdv-a~v-----~f-----------~~ 356 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT-SHV-----EY-----------DT 356 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CC-SCE-----EE-----------EC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEE-EEE-----EE-----------cC
Confidence 3346799999999999999999986421100000 000001111000 000 00 01
Q ss_pred CCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEecccccCcccccchhhH
Q psy6316 92 EIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 92 ~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~~~~~~~~~~~~ 170 (259)
....++|||||||++|...+..+++.+|++|+|+|++++...++.+++..+...++| +|+++||+|+..... ..+.+
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e--~le~i 434 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEE--LLELV 434 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHH--HHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchh--hHHHH
Confidence 122499999999999999999999999999999999999888999999888888999 789999999974210 11222
Q ss_pred HHHHhhhhccc-----cccccccccccCcceeEEeecCCCCCCcccccCCcchhhHHHHhhhhhHHHHHHHHHhhcCchh
Q psy6316 171 RDIIKSQESSV-----QTHKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTD 245 (259)
Q Consensus 171 ~~~~~~~~~~~-----~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 245 (259)
...+..+.... .++++++||++|.+- . . . +.+-+.+.++.+.++++.+.+..+
T Consensus 435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng----------~----------~-~-w~eGI~eLleaL~~~Ip~P~r~~d 492 (1289)
T 3avx_A 435 EMEVRELLSQYDFPGDDTPIVRGSALKALEG----------D----------A-E-WEAKILELAGFLDSYIPEPERAID 492 (1289)
T ss_dssp HHHHHHHHHHTTSCTTTCCEEECCSTTTTTC----------C----------H-H-HHHHHHHHHHHHHHTSCCCCCGGG
T ss_pred HHHHHHHHHhccccccceeEEEEEeccCCCC----------C----------c-c-ccccchhhHhHHhhhcCCCccccc
Confidence 23333333332 357889999998430 0 0 0 112234666777776777888888
Q ss_pred hHHHHHHHHhhcc
Q psy6316 246 WQLMVDLKKVFQI 258 (259)
Q Consensus 246 ~~~~~~i~~~~~~ 258 (259)
.||+++|+++|++
T Consensus 493 ~Pfr~pId~Vf~i 505 (1289)
T 3avx_A 493 KPFLLPIEDVFSI 505 (1289)
T ss_dssp SCCEEECCEEEEE
T ss_pred cceeeeccccccc
Confidence 9999999998874
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=2e-21 Score=170.47 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=97.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|++|||||||+|+|++.... +..+...++........ .+....+.+|||||+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~------~v~~~~g~T~d~~~~~~----------------~~~~~~~~l~DT~G~ 59 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKA------IVEDEEGVTRDPVQDTV----------------EWYGKTFKLVDTCGV 59 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------CCSEEEE----------------EETTEEEEEEECTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc------eecCCCCCccceeeEEE----------------EECCeEEEEEECCCc
Confidence 57999999999999999999987642 11111111111111000 001112999999996
Q ss_pred cc---------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 105 ES---------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 105 ~~---------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
.. +...+..+++.+|++++|+|++++.+..+..+...++..++|+++|+||+|+... .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~-------~~~~~~~ 132 (439)
T 1mky_A 60 FDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE-------FEREVKP 132 (439)
T ss_dssp TSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH-------HHHHTHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc-------cHHHHHH
Confidence 53 3455667889999999999999988888777777777789999999999998521 0011102
Q ss_pred hhhccccc-cccccccccCcceeEEeecC
Q psy6316 176 SQESSVQT-HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i 203 (259)
++. .+++ .++++||++|.|+++++..+
T Consensus 133 ~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 133 ELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp HHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred HHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 222 2344 67899999999998876555
No 135
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=7.7e-22 Score=151.56 Aligned_cols=145 Identities=20% Similarity=0.144 Sum_probs=92.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+|+|.+..... ......++......... +....+.+|||||+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~------~~~~~~~t~~~~~~~~~----------------~~~~~~~l~Dt~G~ 62 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI------VTDIAGTTRDVLREHIH----------------IDGMPLHIIDTAGL 62 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC------CCSSTTCCCSCEEEEEE----------------ETTEEEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce------eeCCCCceeceeeEEEE----------------ECCeEEEEEECCCc
Confidence 359999999999999999998765321 11111111111000000 00012899999997
Q ss_pred cchH----HH----HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 105 ESFS----NL----RNRGSSLCDIAILVVDIMHGLEPQTIESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 105 ~~~~----~~----~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
..+. .. ...+++.+|++++|+|+++..+.....++..+.. .++|+++|+||+|+....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----------- 131 (172)
T 2gj8_A 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET----------- 131 (172)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-----------
T ss_pred ccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch-----------
Confidence 6421 11 1235789999999999988766656666655554 368999999999986321
Q ss_pred HhhhhccccccccccccccCcceeEEeecC
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.......+.+++++||++|.|+++++..+
T Consensus 132 -~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 160 (172)
T 2gj8_A 132 -LGMSEVNGHALIRLSARTGEGVDVLRNHL 160 (172)
T ss_dssp -CEEEEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred -hhhhhccCCceEEEeCCCCCCHHHHHHHH
Confidence 01112235678899999999998866544
No 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.3e-21 Score=155.12 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=95.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc--CCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV--QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
..+|+++|.+|||||||+|++++... .... .+++.+. .. .........+ .+.+|||
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~----~~-~~i~~~~~~~----------------~l~~~Dt 94 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDT----YE-RTLMVDGESA----------------TIILLDM 94 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTE----EE-EEEEETTEEE----------------EEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-Cccceee----EE-EEEEECCeee----------------EEEEeec
Confidence 45699999999999999999986443 1111 1111110 00 0000000001 1789999
Q ss_pred CCCcc-hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 102 PGHES-FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 102 pG~~~-~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+|++. +..+...+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.... .... ...+
T Consensus 95 ~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r-~v~~----~e~~ 169 (211)
T 2g3y_A 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR-EVSV----SEGR 169 (211)
T ss_dssp TTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGC-CSCH----HHHH
T ss_pred CCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCc-eEeH----HHHH
Confidence 99876 4455566778999999999998755544433 4444443 368999999999996321 1111 1222
Q ss_pred hhhccccccccccccccCcceeEEeecC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+...++++++++||++|.|+++++..+
T Consensus 170 ~~a~~~~~~~~e~SAk~g~~v~elf~~l 197 (211)
T 2g3y_A 170 ACAVVFDCKFIETSAAVQHNVKELFEGI 197 (211)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 3333446788999999999998866544
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1e-21 Score=172.16 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=97.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.++|+++|++|+|||||+|+|++.... +..+...++....... + .+....+.+|||||
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~------~v~~~~g~T~d~~~~~-----~-----------~~~~~~~~l~DT~G 60 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS------IVEDTPGVTRDRIYSS-----A-----------EWLNYDFNLIDTGG 60 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------CEEEE-----C-----------TTCSSCCEEEC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce------eecCCCCCccceEEEE-----E-----------EECCceEEEEECCC
Confidence 367999999999999999999887642 1111111111111000 0 11122399999999
Q ss_pred Cc--------chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 104 HE--------SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 104 ~~--------~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+. .+...+..+++.+|++|+|+|++++.+..+..+...++..++|+++|+||+|+..... ...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~---------~~~ 131 (436)
T 2hjg_A 61 IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA---------NIY 131 (436)
T ss_dssp ------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--------------CCC
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh---------hHH
Confidence 75 5666677788999999999999999998888888888888999999999999874210 111
Q ss_pred hhhccccc-cccccccccCcceeEEeecCC
Q psy6316 176 SQESSVQT-HKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 176 ~~~~~~~~-~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
++. .+++ .++++||++|.|+.+++..+.
T Consensus 132 ~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~ 160 (436)
T 2hjg_A 132 DFY-SLGFGEPYPISGTHGLGLGDLLDAVA 160 (436)
T ss_dssp SSG-GGSSCCCEECBTTTTBTHHHHHHHHH
T ss_pred HHH-HcCCCCeEEEeCcCCCChHHHHHHHH
Confidence 122 2233 678999999999998766553
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.84 E-value=2e-21 Score=174.68 Aligned_cols=106 Identities=28% Similarity=0.370 Sum_probs=85.1
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++|||||||.+|...+..+++.+|++|+|+|++++.+.++...+......++|+++++||+|+... ..+...+.+.
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a----~~~~v~~el~ 150 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA----DVDRVKKQIE 150 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC----CHHHHHHHHH
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc----CHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888888899999999999999743 1223333333
Q ss_pred hhhccccccccccccccCcceeEEeecCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.........++++||++|.|+++++..+..
T Consensus 151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I~~ 180 (600)
T 2ywe_A 151 EVLGLDPEEAILASAKEGIGIEEILEAIVN 180 (600)
T ss_dssp HTSCCCGGGCEECBTTTTBSHHHHHHHHHH
T ss_pred HhhCCCcccEEEEEeecCCCchHHHHHHHH
Confidence 332221235789999999999887665543
No 139
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.84 E-value=5e-22 Score=177.04 Aligned_cols=66 Identities=33% Similarity=0.594 Sum_probs=62.6
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
.++|||||||.+|...+..+++.+|++|+|+|++++...++..++..+...++|+++++||+|+..
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 83 LINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 399999999999999999999999999999999999999999999999999999999999999964
No 140
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=8.1e-21 Score=151.12 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=87.6
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+.++|+++|++|+|||||+++|++..+..... ......+ ... ....+.+||||
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~---~~~-----------------------~~~~~~l~Dt~ 63 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSA---ADY-----------------------DGSGVTLVDFP 63 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEE---TTG-----------------------GGSSCEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEE---EEe-----------------------eCceEEEEECC
Confidence 35679999999999999999999876532100 0000000 000 01129999999
Q ss_pred CCcchHHHHHhhccC----CCeEEEEEeCC-CCCCHH-HHHHHHHHH-------hCCCCEEEEEecccccCccccc-chh
Q psy6316 103 GHESFSNLRNRGSSL----CDIAILVVDIM-HGLEPQ-TIESINILK-------SKKTPFVVALNKIDRLYNWNTM-NRR 168 (259)
Q Consensus 103 G~~~~~~~~~~~~~~----ad~~i~v~d~~-~~~~~~-~~~~l~~~~-------~~~~piivv~NK~D~~~~~~~~-~~~ 168 (259)
|++.+...+..++.. +|++++|+|++ +..+.. ...++..+. ..+.|+++|+||+|+....... ..+
T Consensus 64 G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 143 (218)
T 1nrj_B 64 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 143 (218)
T ss_dssp CCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHH
Confidence 999998888888776 89999999998 433322 223333332 2479999999999997532111 111
Q ss_pred hHHHHHhhhhccccccccccccccCcce
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEI 196 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv 196 (259)
.+...+..+....+..++++||++|.+-
T Consensus 144 ~l~~~~~~~~~~~~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 144 ALESEIQKVIERRKKSLNEVERKINEED 171 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHhcccccccccccccc
Confidence 2233344444445678889999988764
No 141
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=1.6e-21 Score=169.03 Aligned_cols=150 Identities=25% Similarity=0.281 Sum_probs=102.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+|+|++..+... ....+.+ ............ ...+.||||||
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~-----~~~~gtT-~d~~~~~~~~~~---------------~~~l~liDTpG 92 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIV-----SDYAGTT-TDPVYKSMELHP---------------IGPVTLVDTPG 92 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------------CCCCEEEEEETT---------------TEEEEEEECSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCcc-----CCCCCee-eeeEEEEEEECC---------------CCeEEEEECcC
Confidence 46799999999999999999988765211 1111111 111111000000 00299999999
Q ss_pred CcchHHH-------HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 104 HESFSNL-------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 104 ~~~~~~~-------~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
+.++... +..++..+|++|+|+|+ +....+..++..+.+.++|+++|+||+|+...... +..+.
T Consensus 93 ~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-------~~~~~ 163 (423)
T 3qq5_A 93 LDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-------ELKGL 163 (423)
T ss_dssp TTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-------HHHHH
T ss_pred CCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-------HHHHH
Confidence 8766433 45577899999999998 56777888999999999999999999999753211 33455
Q ss_pred hhccccccccccccccCcceeEEeecC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+...++++++++||++|.|+++++..+
T Consensus 164 l~~~~g~~v~~vSAktg~gI~eL~~~L 190 (423)
T 3qq5_A 164 YESRYEAKVLLVSALQKKGFDDIGKTI 190 (423)
T ss_dssp SSCCTTCCCCCCSSCCTTSTTTHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 556667899999999999999866555
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.84 E-value=2.7e-21 Score=174.22 Aligned_cols=106 Identities=31% Similarity=0.309 Sum_probs=85.0
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
++|||||||.+|...+..+++.+|++|+|+|++++...++...+......++|+++++||+|+.... .+...+.+.
T Consensus 73 l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~----~~~v~~ei~ 148 (599)
T 3cb4_D 73 LNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD----PERVAEEIE 148 (599)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC----HHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc----HHHHHHHHH
Confidence 8999999999999999999999999999999999999999998888888899999999999997431 233333333
Q ss_pred hhhccccccccccccccCcceeEEeecCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.........++++||++|.|+++++..+..
T Consensus 149 ~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~ 178 (599)
T 3cb4_D 149 DIVGIDATDAVRCSAKTGVGVQDVLERLVR 178 (599)
T ss_dssp HHTCCCCTTCEEECTTTCTTHHHHHHHHHH
T ss_pred HHhCCCcceEEEeecccCCCchhHHHHHhh
Confidence 333222235889999999999887665543
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.84 E-value=2.6e-21 Score=170.47 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=101.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|||||||+|+|++.... +..++..++..+........+ ..++||||||+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a------~vs~~~gTT~d~~~~~i~~~g----------------~~~~l~DTaG~ 301 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA------IVTDIPGTTRDVISEEIVIRG----------------ILFRIVDTAGV 301 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC------CCCCSSCCSSCSCCEEEEETT----------------EEEEEEESSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC------ccCCCCCeeeeeEEEEEecCC----------------eEEEEEECCCc
Confidence 46999999999999999999987542 222222222222111111111 12999999998
Q ss_pred c-chH--------HHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 105 E-SFS--------NLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 105 ~-~~~--------~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
. .+. .....+++.+|++|+|+|++++.+..+.+++..+ .++|+++|+||+|+... ...+++ .
T Consensus 302 ~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~---~~~~~~----~ 372 (482)
T 1xzp_A 302 RSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK---INEEEI----K 372 (482)
T ss_dssp CSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC---CCHHHH----H
T ss_pred cccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc---cCHHHH----H
Confidence 7 443 2345678899999999999988887777766555 47899999999999632 112222 2
Q ss_pred hhhccccccccccccccCcceeEEeecCCC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.... .+++++++||++|.|+++++..+..
T Consensus 373 ~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 373 NKLG-TDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp HHHT-CSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred HHhc-CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 2221 2357889999999999998776654
No 144
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=2.2e-21 Score=170.84 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=84.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++.... +......++...........+ ..+.||||||+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a------~vs~~~gtT~d~~~~~i~~~g----------------~~l~liDT~G~ 291 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERA------IVSHMPGTTRDYIEECFIHDK----------------TMFRLTDTAGL 291 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------------CEEEEETT----------------EEEEEEC----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc------ccCCCCCceEEEEEEEEEECC----------------eEEEEEECCCC
Confidence 45999999999999999999877531 122222222221111111111 12999999998
Q ss_pred cchHHHH--------HhhccCCCeEEEEEeCCCCCCH----HHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 105 ESFSNLR--------NRGSSLCDIAILVVDIMHGLEP----QTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 105 ~~~~~~~--------~~~~~~ad~~i~v~d~~~~~~~----~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
.++...+ ..++..+|++++|+|++++.+. ....++..+. ++|+++|+||+|+..... . . .+
T Consensus 292 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~---~-~-~~ 364 (476)
T 3gee_A 292 REAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD---A-L-IR 364 (476)
T ss_dssp ----------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH---H-H-HH
T ss_pred CcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc---h-h-HH
Confidence 7655433 3367899999999999988776 4445555544 789999999999974321 1 1 11
Q ss_pred HHhhhhccccccccccccccCcceeEEeecCCC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.+... ...+++++||++|.|+++++..+..
T Consensus 365 ~l~~~---~~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 365 AIADG---TGTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp HHHHH---HTSCEEECBTTTTBSHHHHHHHHTH
T ss_pred HHHhc---CCCceEEEEECCCCCHHHHHHHHHH
Confidence 12221 1257889999999999998776654
No 145
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.84 E-value=2.2e-21 Score=174.24 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=101.5
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
.++..+|+++|.+|||||||+++|++..+.....++++..+.....+. .... .+. .......+.+||
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~--~~~v--~~~---------~~~~~~~~~i~D 104 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPN--IKGL--END---------DELKECLFHFWD 104 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGG--SGGG--TTC---------STTTTCEEEEEC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccc--ccce--eec---------CCCceEEEEEEE
Confidence 455567999999999999999999988876554444443332111100 0000 000 001112399999
Q ss_pred CCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 101 TPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 101 tpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
|||++.+......+++.+|++|+|+|+++. .....++..+... +.|+++|+||+|+.... ....+.++...
T Consensus 105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~-----~v~~~~~~~~~ 177 (535)
T 3dpu_A 105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSY-----NIEQKKINERF 177 (535)
T ss_dssp CCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTC-----CCCHHHHHHHC
T ss_pred CCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccccc-----ccCHHHHHHHH
Confidence 999999988888888999999999999764 3445577777664 49999999999997421 11123345555
Q ss_pred ccccccccccccccCcceeEEeecCC
Q psy6316 179 SSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 179 ~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
...+.+++++||++|.|+++++..+.
T Consensus 178 ~~~~~~~~~vSA~~g~gi~eL~~~l~ 203 (535)
T 3dpu_A 178 PAIENRFHRISCKNGDGVESIAKSLK 203 (535)
T ss_dssp GGGTTCEEECCC-----CTTHHHHHH
T ss_pred HhcCCceEEEecCcccCHHHHHHHHH
Confidence 55667899999999999998766553
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=163.43 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=98.1
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+..+|+|+|.+|+|||||+++|.+..+.... .+.+...... ... ...+.|||||
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~-----~~~----------------~~~l~i~Dt~ 217 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETV-----EYK----------------NISFTVWDVG 217 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEE-----EET----------------TEEEEEEECC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEE-----ecC----------------cEEEEEEECC
Confidence 3457999999999999999999877653211 1111111100 001 1129999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHH-Hh---CCCCEEEEEecccccCcccccchhhHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINIL-KS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~ 177 (259)
|++.+...+..+++.+|++|+|+|+++..+..... ++..+ .. .++|+++|+||+|+.... ..+++...+...
T Consensus 218 G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~ 294 (329)
T 3o47_A 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLH 294 (329)
T ss_dssp -----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCT
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchh
Confidence 99999999999999999999999998876655433 33333 32 378999999999997432 223333333222
Q ss_pred -hccccccccccccccCcceeEEeecC
Q psy6316 178 -ESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 178 -~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
....+++++++||++|.|+++++..+
T Consensus 295 ~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 295 SLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 23345678899999999998865544
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=3.1e-21 Score=169.97 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=101.5
Q ss_pred ccccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEE
Q psy6316 20 NFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLII 99 (259)
Q Consensus 20 ~~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 99 (259)
..|+.++|+++|++|+|||||+|+|++..+.. .....+.+.... ... + ......+.+|
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-----v~~~~g~t~~~~-~~~-----~-----------~~~~~~~~li 76 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISI-----VEDTPGVTRDRI-YSS-----A-----------EWLNYDFNLI 76 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC----------------CE-EEE-----C-----------TTCSSCCEEE
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-----cCCCCCcceeEE-EEE-----E-----------EECCceEEEE
Confidence 45778899999999999999999998876521 111111111110 000 0 1111239999
Q ss_pred eCCC--------CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHH
Q psy6316 100 DTPG--------HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 100 DtpG--------~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
|||| ++.+...+..+++.+|++|+|+|+.++.+..+..++..++..++|+++|+||+|+....
T Consensus 77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--------- 147 (456)
T 4dcu_A 77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--------- 147 (456)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------
T ss_pred ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh---------
Confidence 9999 56677777888899999999999999999989888899988999999999999986321
Q ss_pred HHHhhhhccccccccccccccCcceeEEeecCCC
Q psy6316 172 DIIKSQESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 172 ~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
....++.......++++||++|.|+.+++..+..
T Consensus 148 ~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 148 ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp ---CCSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred hhHHHHHHcCCCceEEeecccccchHHHHHHHHh
Confidence 1111222211224578999999999987766544
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.83 E-value=1.2e-20 Score=155.51 Aligned_cols=163 Identities=19% Similarity=0.235 Sum_probs=88.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++........+....... .+......... +. .++ ....++||||||+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~---~~-~~~--------~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK-KTVQVEQSKVL---IK-EGG--------VQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEE---EC-C----------CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccC-CceEEEEEEEE---Ee-cCC--------eEEEEEEEECCCc
Confidence 45999999999999999999877654322110000000 00101000000 00 000 0002999999996
Q ss_pred c-------chHHHH-------Hhhcc-------------CCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCEEEEEecc
Q psy6316 105 E-------SFSNLR-------NRGSS-------------LCDIAILVVDIMH-GLEPQTIESINILKSKKTPFVVALNKI 156 (259)
Q Consensus 105 ~-------~~~~~~-------~~~~~-------------~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~piivv~NK~ 156 (259)
. .+.... ..++. .+|+++++++.+. +....+..++..+.. ++|+++|+||+
T Consensus 76 ~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~ 154 (274)
T 3t5d_A 76 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKA 154 (274)
T ss_dssp SCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSG
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEecc
Confidence 3 233332 22222 3789999997765 678888888888887 89999999999
Q ss_pred cccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEeecCC
Q psy6316 157 DRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 157 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
|+.... ........+.......+++++.+||+++.|+++++..+.
T Consensus 155 D~~~~~---e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~ 199 (274)
T 3t5d_A 155 DTLTPE---ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK 199 (274)
T ss_dssp GGSCHH---HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHH
T ss_pred CCCCHH---HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHh
Confidence 987321 223333444444445578888999999999998765553
No 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=4.8e-21 Score=170.68 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|.+|+|||||+|+|++..+... ..+++..... + . +....+.||||
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~~~----~----------~-----------~~~~~~~l~Dt 373 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVET----V----------T-----------YKNVKFNVWDV 373 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEEE----E----------E-----------SSSCEEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeEEE----E----------E-----------eCCEEEEEEEC
Confidence 3456799999999999999999998775321 1122211111 0 0 01112999999
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
||++.+...+..+++.+|++|+|+|+++..+..... ++..+.. .++|+++|+||+|+.... ..+++...+..
T Consensus 374 ~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---~~~~~~~~~~~ 450 (497)
T 3lvq_E 374 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM---KPHEIQEKLGL 450 (497)
T ss_dssp CCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC---CHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC---CHHHHHHHhch
Confidence 999999999999999999999999998865554433 4444432 479999999999997421 22333333221
Q ss_pred -hhccccccccccccccCcceeEEeecCCC
Q psy6316 177 -QESSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 177 -~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
......++++++||++|.|+++++..+..
T Consensus 451 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 451 TRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred hhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 12233567889999999999987766543
No 150
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.83 E-value=7.6e-21 Score=147.70 Aligned_cols=148 Identities=26% Similarity=0.308 Sum_probs=88.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC-
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG- 103 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG- 103 (259)
.+|+++|.+|+|||||+++|++..+.....++.+ ....... ...+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t-------~~~~~~~--------------------~~~~~l~Dt~G~ 54 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-------RKIIEIE--------------------WKNHKIIDMPGF 54 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT-------TSCEEEE--------------------ETTEEEEECCCB
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc-------ceeEEEe--------------------cCCEEEEECCCc
Confidence 3699999999999999999998876543322111 1111000 00299999999
Q ss_pred ----------CcchHHHHHhhcc----CCCeEEEEEeCCCCC-----------CHHHHHHHHHHHhCCCCEEEEEecccc
Q psy6316 104 ----------HESFSNLRNRGSS----LCDIAILVVDIMHGL-----------EPQTIESINILKSKKTPFVVALNKIDR 158 (259)
Q Consensus 104 ----------~~~~~~~~~~~~~----~ad~~i~v~d~~~~~-----------~~~~~~~l~~~~~~~~piivv~NK~D~ 158 (259)
++.+...+..++. .++++++|+|+.+.. ...+.+.+..+...+.|+++|+||+|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (190)
T 2cxx_A 55 GFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK 134 (190)
T ss_dssp SCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred cccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhc
Confidence 4556666555544 466777777764310 111223445555678999999999999
Q ss_pred cCcccccchhhHHHHHhhhhcc---ccccccccccccCcceeEEeecC
Q psy6316 159 LYNWNTMNRRDVRDIIKSQESS---VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.... .+........+... +...++++||++|.|+++++..+
T Consensus 135 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 178 (190)
T 2cxx_A 135 IKNV----QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 178 (190)
T ss_dssp CSCH----HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred cCcH----HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHH
Confidence 7431 11122211111111 12246899999999998755443
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.82 E-value=5.4e-21 Score=167.75 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=91.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+|+|++.... +......++...........+ ..+.||||||+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a------~v~~~~gtT~d~~~~~i~~~g----------------~~v~liDT~G~ 282 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRA------IVTDLPGTTRDVVESQLVVGG----------------IPVQVLDTAGI 282 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBS------CCSCCTTCCHHHHHHEEEETT----------------EEEEECC----
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcc------cccCCCCeeEEEEEEEEEECC----------------EEEEEEECCcc
Confidence 45999999999999999999887542 111111122111111000011 12999999997
Q ss_pred cchHHHH--------HhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 105 ESFSNLR--------NRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 105 ~~~~~~~--------~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
.++...+ ..++..+|++++|+|++++.+..+..++..+.. .|+++|+||+|+...... . .++.
T Consensus 283 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~---~----~~~~ 353 (462)
T 3geh_A 283 RETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLI---T----SLEY 353 (462)
T ss_dssp ----------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGS---T----TCCC
T ss_pred ccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhh---H----HHHH
Confidence 6554332 235788999999999999888888777776654 799999999999743211 0 1111
Q ss_pred hhccccccccccccccCcceeEEeecCC
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
+. ...+++++||++|.|+++++..+.
T Consensus 354 ~~--~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 354 PE--NITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp CT--TCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred hc--cCCcEEEEECCCCCCHHHHHHHHH
Confidence 11 245788999999999998766653
No 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.82 E-value=5.7e-21 Score=148.21 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=93.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc--cCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN--VQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+|+++|++|||||||+++|++.. +...+.++++.++.......... .. ....+.+||||
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~--~~----------------~~~~~~i~Dt~ 64 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK--RK----------------RDLVLNVWDFA 64 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------------------------CEEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC--CC----------------CceEEEEEecC
Confidence 359999999999999999998752 22222222222221111100000 00 01128999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCC-CHHH-HHHHHHHHh--CCCCEEEEEecccccCcccccchh-hHHHHHhhh
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQT-IESINILKS--KKTPFVVALNKIDRLYNWNTMNRR-DVRDIIKSQ 177 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~-~~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~-~~~~~~~~~ 177 (259)
|++.|...+..+++.+|++++|+|.+++. +... ..++..+.. .+.|+++|+||+|+.... ... ......+.+
T Consensus 65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 141 (184)
T 2zej_A 65 GREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEK---QRKACMSKITKEL 141 (184)
T ss_dssp SHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH---HHHHHHHHHHHHT
T ss_pred CCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccch---hhHHHHHHHHHHH
Confidence 99888887778889999999999998753 2222 234454443 378999999999986321 010 112223444
Q ss_pred hcccccc----ccccccccCc-ceeEEee
Q psy6316 178 ESSVQTH----KTVESARKGQ-EICIKIE 201 (259)
Q Consensus 178 ~~~~~~~----~i~~Sa~~g~-gv~~~l~ 201 (259)
....+++ ++++||++|. |++.++.
T Consensus 142 ~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~ 170 (184)
T 2zej_A 142 LNKRGFPAIRDYHFVNATEESDALAKLRK 170 (184)
T ss_dssp TTCTTSCEEEEEEECCTTSCCHHHHHHHH
T ss_pred HHhcCCcchhheEEEecccCchhHHHHHH
Confidence 4445555 7889999996 7766443
No 153
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.82 E-value=6.4e-21 Score=161.03 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=103.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||++++++..+...+.++........ ..... ..+ .+.||||||+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~-----~~~----------------~~~l~Dt~G~ 213 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDG-----KPV----------------NLGLWDTAGL 213 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEE-EEETT-----EEE----------------EEEEEEECCC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEE-EEECC-----EEE----------------EEEEEeCCCc
Confidence 5699999999999999999998876554444433222111 00000 000 1779999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH--HHHHHHHhC--CCCEEEEEecccccCcccccc-------hhhHHHH
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI--ESINILKSK--KTPFVVALNKIDRLYNWNTMN-------RRDVRDI 173 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~--~~l~~~~~~--~~piivv~NK~D~~~~~~~~~-------~~~~~~~ 173 (259)
+.+...+..+++.+|++++|+|+++..+..+. .++..+... ++|+++|+||+|+........ .......
T Consensus 214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence 99998888999999999999999886555444 344555543 789999999999864210000 0011122
Q ss_pred Hhhhhccccc-cccccccccCcceeEEeec
Q psy6316 174 IKSQESSVQT-HKTVESARKGQEICIKIEP 202 (259)
Q Consensus 174 ~~~~~~~~~~-~~i~~Sa~~g~gv~~~l~~ 202 (259)
...+....+. +++++||++|.|+++++..
T Consensus 294 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 323 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLECSALTQRGLKTVFDE 323 (332)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCcCHHHHHHH
Confidence 2333333454 7889999999999875543
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=3.5e-20 Score=162.53 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=100.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|||||||+|+|++.... +......++..+...... +....+.+|||||
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~------~v~~~~gtT~d~~~~~i~----------------~~g~~~~l~Dt~G 237 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERA------LVSPIPGTTRDPVDDEVF----------------IDGRKYVFVDTAG 237 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTE------EECCCC------CCEEEE----------------ETTEEEEESSCSC
T ss_pred CceEEEECCCCCCHHHHHHHHhCCccc------ccCCCCCCcCCceEEEEE----------------ECCEEEEEEECCC
Confidence 456999999999999999999987642 122222222211111000 0111289999999
Q ss_pred CcchHHH------------HHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHH
Q psy6316 104 HESFSNL------------RNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 104 ~~~~~~~------------~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
+...... ...++..+|++++|+|++.+.+.++......+...+.|+++|+||+|+.... ....++..
T Consensus 238 ~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~ 316 (439)
T 1mky_A 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR-EKRYDEFT 316 (439)
T ss_dssp C-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG-GGCHHHHH
T ss_pred CccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch-hhHHHHHH
Confidence 7443322 1245678999999999999888888777777888899999999999997421 11122233
Q ss_pred HHHhh-hhccccccccccccccCcceeEEeecCC
Q psy6316 172 DIIKS-QESSVQTHKTVESARKGQEICIKIEPIP 204 (259)
Q Consensus 172 ~~~~~-~~~~~~~~~i~~Sa~~g~gv~~~l~~i~ 204 (259)
..+.+ +......+++++||++|.|+++++..+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 317 KLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp HHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 33322 2222345778999999999998766553
No 155
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.81 E-value=3.3e-20 Score=151.72 Aligned_cols=158 Identities=14% Similarity=0.152 Sum_probs=95.4
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+..+|+|+|++|||||||+|+|++...........+ ++........ .....++.||||
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~-----~t~~~~~~~~----------------~~~~~~i~iiDT 78 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQT-----LTKTCSKSQG----------------SWGNREIVIIDT 78 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCC-----CCCSCEEEEE----------------EETTEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-----eeeeeEEEEE----------------EeCCCEEEEEEC
Confidence 3456799999999999999999998763221110000 1111100000 001113999999
Q ss_pred CCCcch-----------HHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC-----CCCEEEEEe-cccccCcccc
Q psy6316 102 PGHESF-----------SNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK-----KTPFVVALN-KIDRLYNWNT 164 (259)
Q Consensus 102 pG~~~~-----------~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~-----~~piivv~N-K~D~~~~~~~ 164 (259)
||+.++ ......+++.+|++|+|+|++. ....+...+..+.+. ..|.++++| |+|+....
T Consensus 79 pG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-- 155 (260)
T 2xtp_A 79 PDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-- 155 (260)
T ss_dssp CGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc--
Confidence 996543 2223346789999999999985 666666666666554 578888887 99997321
Q ss_pred cch-------hhHHHHHhhhhcccc-ccccccccccCcceeEEeecC
Q psy6316 165 MNR-------RDVRDIIKSQESSVQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 165 ~~~-------~~~~~~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
... ..+...+..+...+. +..+++||++|.|+++++..+
T Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i 202 (260)
T 2xtp_A 156 LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCI 202 (260)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHH
Confidence 000 112223333332221 334889999999999876655
No 156
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.81 E-value=7.6e-21 Score=148.59 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=91.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc--CCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV--QDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
..+|+++|.+|||||||+|+|++... .... .+++. .... .........+ .+.+|||
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~----~~~~-~~~~~~~~~~----------------~l~~~Dt 63 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGE----DTYE-RTLMVDGESA----------------TIILLDM 63 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCT----TEEE-EEEEETTEEE----------------EEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccce----eEEE-EEEEECCeEE----------------EEEEEEe
Confidence 35699999999999999999986432 1111 11111 1000 0000000000 1789999
Q ss_pred CCCcc-hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh----CCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 102 PGHES-FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS----KKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 102 pG~~~-~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+|+.. +..+...+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.... .... ....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r-~v~~----~~~~ 138 (192)
T 2cjw_A 64 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXR-EVSV----SEGR 138 (192)
T ss_dssp CCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGC-CSCH----HHHH
T ss_pred ccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccc-cccH----HHHH
Confidence 99765 3334455678899999999998765544433 3333432 368999999999986321 1111 1122
Q ss_pred hhhccccccccccccccCcceeEEeecC
Q psy6316 176 SQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+....+++++++||++|.|+++++..+
T Consensus 139 ~~a~~~~~~~~e~SA~~g~~v~~lf~~l 166 (192)
T 2cjw_A 139 AXAVVFDXKFIETSAAVQHNVKELFEGI 166 (192)
T ss_dssp HHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHhCCceEEeccccCCCHHHHHHHH
Confidence 2333345678899999999998866544
No 157
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=2.4e-20 Score=156.12 Aligned_cols=149 Identities=14% Similarity=0.134 Sum_probs=97.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCC---CCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQD---GEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+|+++|.+|+|||||+++|++..... ....++....+.... .... .+.+|||
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~--------~~~~----------------~l~i~Dt 59 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF--------LGNM----------------TLNLWDC 59 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE--------TTTE----------------EEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe--------CCce----------------EEEEEEC
Confidence 459999999999999999998763210 111122211111000 0011 2999999
Q ss_pred CCCcch-----HHHHHhhccCCCeEEEEEeCCCCCCHHHHH-H---HHHHHh--CCCCEEEEEecccccCcccccchh--
Q psy6316 102 PGHESF-----SNLRNRGSSLCDIAILVVDIMHGLEPQTIE-S---INILKS--KKTPFVVALNKIDRLYNWNTMNRR-- 168 (259)
Q Consensus 102 pG~~~~-----~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~---l~~~~~--~~~piivv~NK~D~~~~~~~~~~~-- 168 (259)
||++.+ ...+..+++.+|++|+|+|+++..+..+.. + +..+.. .++|+++|+||+|+.... .+.
T Consensus 60 ~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~---~r~~~ 136 (307)
T 3r7w_A 60 GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLD---KREEL 136 (307)
T ss_dssp CCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH---HHHHH
T ss_pred CCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchh---hhhHH
Confidence 999888 556677789999999999999877666553 2 233332 379999999999997421 122
Q ss_pred --hHHHHHhhhhcccc---ccccccccccCcceeEEee
Q psy6316 169 --DVRDIIKSQESSVQ---THKTVESARKGQEICIKIE 201 (259)
Q Consensus 169 --~~~~~~~~~~~~~~---~~~i~~Sa~~g~gv~~~l~ 201 (259)
.....++++...++ ++++++||++ .|+.+.+.
T Consensus 137 ~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~ 173 (307)
T 3r7w_A 137 FQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWS 173 (307)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHH
Confidence 33345556666654 6788999999 66655443
No 158
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.81 E-value=2.1e-20 Score=167.41 Aligned_cols=116 Identities=28% Similarity=0.405 Sum_probs=88.8
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcccc--------C--------------CCCCCcceeeccccccCccccccccccccC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNV--------Q--------------DGEAGGITQQIGATNVPADAIRENTKHVRG 80 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
|.+||+|+|+.++|||||..+|+...- . ....++++.......
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~--------------- 94 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQ--------------- 94 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEE---------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEE---------------
Confidence 356899999999999999999962210 0 000111111111111
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 81 PGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
..++...++|+|||||.+|.....+.++.+|++|+|+|+..+...++...|+++.+.++|.++++||+|...
T Consensus 95 --------~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 95 --------FPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp --------EEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred --------EEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 122333499999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q psy6316 161 N 161 (259)
Q Consensus 161 ~ 161 (259)
.
T Consensus 167 a 167 (548)
T 3vqt_A 167 L 167 (548)
T ss_dssp C
T ss_pred c
Confidence 4
No 159
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=1.1e-19 Score=162.17 Aligned_cols=168 Identities=20% Similarity=0.232 Sum_probs=102.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceee--cccccc---CccccccccccccCCCCCCCCCCCCCCCCeEE
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQ--IGATNV---PADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (259)
..+|+++|++|+|||||+++|+...-.....+.+... ...+.. ..+..+....... .....+....++|
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~------~~~~~~~~~~i~l 86 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS------VMQFPYHDCLVNL 86 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTT------EEEEEETTEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeee------EEEEEECCeEEEE
Confidence 4679999999999999999998642111000000000 000000 0000000000000 0000111223999
Q ss_pred EeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhh
Q psy6316 99 IDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178 (259)
Q Consensus 99 iDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~ 178 (259)
||||||.+|...+..+++.+|++|+|+|++++...+...++..+...++|+++++||+|+.... ..+..+.++...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~----~~~~~~~i~~~l 162 (529)
T 2h5e_A 87 LDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD----PMELLDEVENEL 162 (529)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC----HHHHHHHHHHHH
T ss_pred EECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc----HHHHHHHHHHHh
Confidence 9999999999999999999999999999999988888888888888899999999999997432 223333333332
Q ss_pred ccc--cccccccccccCcceeEEee
Q psy6316 179 SSV--QTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 179 ~~~--~~~~i~~Sa~~g~gv~~~l~ 201 (259)
... ...+...|+.++.|+.+++.
T Consensus 163 ~~~~~~~~~pi~sa~~~~Gv~dl~~ 187 (529)
T 2h5e_A 163 KIGCAPITWPIGCGKLFKGVYHLYK 187 (529)
T ss_dssp CCEEEESEEEESCGGGCCEEEETTT
T ss_pred CCCccceecceecccCcceeeehhh
Confidence 211 11112379999999988543
No 160
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.80 E-value=7.1e-20 Score=149.40 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=53.5
Q ss_pred CCCeEEEEEeCCCC--CCHHHHH-HHHHHH----hCCCCEEEEEecccccCcccccchhhHHHHHhhhhcc-cccccccc
Q psy6316 117 LCDIAILVVDIMHG--LEPQTIE-SINILK----SKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS-VQTHKTVE 188 (259)
Q Consensus 117 ~ad~~i~v~d~~~~--~~~~~~~-~l~~~~----~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 188 (259)
.+|++|+|+|+++. .+..... ++..+. ..+.|+++|+||+|+... ..+ ...+.+... .+++++++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~------~~v-~~~~~~~~~~~~~~~~e~ 234 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE------RYI-RDAHTFALSKKNLQVVET 234 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH------HHH-HHHHHHHHTSSSCCEEEC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc------HHH-HHHHHHHHhcCCCeEEEE
Confidence 69999999999886 5655433 444443 357999999999998631 222 233333332 36788899
Q ss_pred ccccCcceeEEeec
Q psy6316 189 SARKGQEICIKIEP 202 (259)
Q Consensus 189 Sa~~g~gv~~~l~~ 202 (259)
||++|.|+++++..
T Consensus 235 SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 235 SARSNVNVDLAFST 248 (255)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 99999999875543
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=6.2e-20 Score=149.02 Aligned_cols=154 Identities=11% Similarity=0.083 Sum_probs=91.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+|+|++...........+ ++......... .....++||||||
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~-----~T~~~~~~~~~----------------~~~~~i~liDTPG 79 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATS-----VTRACTTGSRR----------------WDKCHVEVVDTPD 79 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC--------------CCSCEEEEEE----------------ETTEEEEEEECCS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCC-----ccccEEEEEEE----------------ECCcEEEEEECCC
Confidence 45699999999999999999998876432211111 11111110000 0111399999999
Q ss_pred C--------cchHHHHHhhc----cCCCeEEEEEeCCCCCCHHHHHHHHHHHhC------CCCEEEEEecccccCccccc
Q psy6316 104 H--------ESFSNLRNRGS----SLCDIAILVVDIMHGLEPQTIESINILKSK------KTPFVVALNKIDRLYNWNTM 165 (259)
Q Consensus 104 ~--------~~~~~~~~~~~----~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~------~~piivv~NK~D~~~~~~~~ 165 (259)
. ..+......++ ..+|++|+|+|++. ....+...+..+.+. +.|++++.||+|+...
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~---- 154 (247)
T 3lxw_A 80 IFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG---- 154 (247)
T ss_dssp CSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC----
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC----
Confidence 6 33333333333 89999999999975 666666666666553 6899999999999642
Q ss_pred chhhHH-----HHHhhhhccccccccccccc-----cCcceeEEeecC
Q psy6316 166 NRRDVR-----DIIKSQESSVQTHKTVESAR-----KGQEICIKIEPI 203 (259)
Q Consensus 166 ~~~~~~-----~~~~~~~~~~~~~~i~~Sa~-----~g~gv~~~l~~i 203 (259)
..++.. ..++.+....+.+++.+++. .+.|+.+++..+
T Consensus 155 ~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i 202 (247)
T 3lxw_A 155 SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMV 202 (247)
T ss_dssp CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHH
Confidence 122211 12344444444444433332 367888876655
No 162
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.79 E-value=3.9e-20 Score=168.74 Aligned_cols=132 Identities=29% Similarity=0.287 Sum_probs=92.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccc-ccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT-NVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+||+|+|+.++|||||..+|+...-.-...+.+....... ..+.+..+.. .+.. ......++...++|+|||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGI--TI~s----~~~~~~~~~~~iNlIDTP 75 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGI--TIQT----GITSFQWENTKVNIIDTP 75 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSS--CSSC----CCCCCBCSSCBCCCEECC
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCC--cEEe----eeEEEEECCEEEEEEECC
Confidence 45899999999999999999963321100000111000000 1111111111 1110 112234555569999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
||.+|.......++.+|++|+|+|+.++...++...|+++.+.++|.++++||+|....
T Consensus 76 GH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 76 GHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp CSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred CcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999999998754
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=4.7e-20 Score=144.77 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=99.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|||||||+++|++..+...+.++++.+.......... ..+ .+.+|||||+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g-----~~~----------------~~~i~Dt~g~ 64 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-----KTI----------------KAQIWDTAGQ 64 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETT-----EEE----------------EEEEEECSSG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-----EEE----------------EEEEEECCCc
Confidence 4599999999999999999998876543333322211111111100 001 1789999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.+|++++|+|+++..+.... .++..+.. .+.|+++++||+|+.... .... .....+...
T Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~-~~~~----~~a~~l~~~ 139 (199)
T 2f9l_A 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPT----DEARAFAEK 139 (199)
T ss_dssp GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCH----HHHHHHHHH
T ss_pred hhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc-CcCH----HHHHHHHHH
Confidence 88877777788899999999999875444332 34444433 468999999999986321 1111 123333344
Q ss_pred ccccccccccccCcceeEEeecC
Q psy6316 181 VQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.++.++.+||+++.|+++++..+
T Consensus 140 ~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 140 NNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHH
Confidence 45677789999999998855444
No 164
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.78 E-value=1.5e-19 Score=150.51 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=94.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+|+++|..|+|||||++++.+.... ........+++....... ..+ .+.||||||++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~~~Tig~~~~~v~------~~v----------------~LqIWDTAGQE 57 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYLESTSNPSLEHFS------TLI----------------DLAVMELPGQL 57 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTCCCCCSCCCEEEC------SSS----------------CEEEEECCSCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-CccceecCeeeeeeEEEc------cEE----------------EEEEEECCCch
Confidence 4899999999999999988755322 111112222222221110 001 29999999999
Q ss_pred chHH---HHHhhccCCCeEEEEEeCCCCCCHHHHHHH----HHHH--hCCCCEEEEEecccccCccc-ccchhhHHH-HH
Q psy6316 106 SFSN---LRNRGSSLCDIAILVVDIMHGLEPQTIESI----NILK--SKKTPFVVALNKIDRLYNWN-TMNRRDVRD-II 174 (259)
Q Consensus 106 ~~~~---~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l----~~~~--~~~~piivv~NK~D~~~~~~-~~~~~~~~~-~~ 174 (259)
+|.. .+..+++.++++|+|+|+++. ......++ ..+. ..+.|+++++||+|+..... ....+++.. ..
T Consensus 58 rf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~ 136 (331)
T 3r7w_B 58 NYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTG 136 (331)
T ss_dssp SSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHH
Confidence 9963 467889999999999999987 33344433 2222 24789999999999974210 000122222 23
Q ss_pred hhhhcc----ccccccccccccCcceeEEee
Q psy6316 175 KSQESS----VQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 175 ~~~~~~----~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
+++... .++.++.+||++ .++.+.+.
T Consensus 137 ~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs 166 (331)
T 3r7w_B 137 EELLELGLDGVQVSFYLTSIFD-HSIYEAFS 166 (331)
T ss_dssp HTTSSSSCSCCCEEEECCCSSS-SHHHHHHH
T ss_pred HHHHhhcccccCceEEEeccCC-CcHHHHHH
Confidence 344443 567888999997 57876443
No 165
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=1.4e-19 Score=153.01 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=91.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
++|+++|.+|||||||+|+|++..... ..+..++..+.... +...+ ...++||||||+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i-------~~~~ftTl~p~~g~-----v~~~~----------~~~~~l~DtPG~ 216 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI-------ADYHFTTLVPNLGM-----VETDD----------GRSFVMADLPGL 216 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE-------SSTTSSCCCCCEEE-----EECSS----------SCEEEEEEHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc-------ccCCccccCceEEE-----EEeCC----------CceEEEecCCCC
Confidence 469999999999999999998765321 11111221111100 00000 013999999994
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCC---CCCHHHH-HHHHHHHh-----CCCCEEEEEecccccCcccccchh
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMH---GLEPQTI-ESINILKS-----KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~---~~~~~~~-~~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
.. +...+...+..+|++|+|+|+++ .....+. .++..+.. .++|+++|+||+|+... .
T Consensus 217 i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~ 290 (342)
T 1lnz_A 217 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA------A 290 (342)
T ss_dssp HHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH------H
T ss_pred cccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC------H
Confidence 32 23334445567999999999986 3333333 34455554 36899999999999732 1
Q ss_pred hHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
+..+.+.+.... .++++++||+++.|+++++..+
T Consensus 291 e~~~~l~~~l~~-~~~v~~iSA~tg~gi~eL~~~l 324 (342)
T 1lnz_A 291 ENLEAFKEKLTD-DYPVFPISAVTREGLRELLFEV 324 (342)
T ss_dssp HHHHHHHHHCCS-CCCBCCCSSCCSSTTHHHHHHH
T ss_pred HHHHHHHHHhhc-CCCEEEEECCCCcCHHHHHHHH
Confidence 222222222211 1678899999999998866554
No 166
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=5.2e-18 Score=156.02 Aligned_cols=175 Identities=21% Similarity=0.220 Sum_probs=107.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeecccccc-CccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNV-PADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.++|+++|++|+|||||+|+|+...-.....+.+......... ..+..+.. .+... .....+....++|||||
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~gi--Ti~~~----~~~~~~~~~~i~liDTP 83 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGI--TITSA----ATTAAWEGHRVNIIDTP 83 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCS----EEEEEETTEEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCc--eEeee----eEEEEECCeeEEEEECc
Confidence 4679999999999999999998532110000000000000000 00000000 00000 00001112239999999
Q ss_pred CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc-
Q psy6316 103 GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV- 181 (259)
Q Consensus 103 G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~- 181 (259)
|+.+|...+..+++.+|++|+|+|++++.+.++...+..+...++|+++++||+|+... ......+.++......
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~----~~~~~~~~l~~~l~~~~ 159 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA----NFEYSVSTLHDRLQANA 159 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC----CHHHHHHHHHHHHCCCE
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc----chHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999998899999999999999743 2333444444443321
Q ss_pred cccccccccccCcceeEEeecCCCCCCccc
Q psy6316 182 QTHKTVESARKGQEICIKIEPIPGEAPKMF 211 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~ 211 (259)
....+++|+ |.|+..++..+ ....+++
T Consensus 160 ~~~~ipisa--~~~~~~l~d~l-~~~~~~~ 186 (693)
T 2xex_A 160 APIQLPIGA--EDEFEAIIDLV-EMKCFKY 186 (693)
T ss_dssp EESEEEECC--GGGCCEEEETT-TTEEEEC
T ss_pred eeEEeeccc--CCCcceeeeee-cceeEEe
Confidence 123457887 78888877665 3334444
No 167
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.77 E-value=3.9e-19 Score=151.61 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=81.0
Q ss_pred CeEEEeCCCCc-------------chHHHHHhhccCC-CeEEEEEeCCCCCCHHHH-HHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHE-------------SFSNLRNRGSSLC-DIAILVVDIMHGLEPQTI-ESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~-------------~~~~~~~~~~~~a-d~~i~v~d~~~~~~~~~~-~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++||||||.. .+..+...++..+ +++++|+|++......+. .++..+...+.|+++|+||+|+.
T Consensus 131 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~ 210 (353)
T 2x2e_A 131 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLM 210 (353)
T ss_dssp SEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGS
T ss_pred CcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccccc
Confidence 49999999952 3445566666554 566667777665555554 36677777789999999999997
Q ss_pred CcccccchhhHHHHHhhhh--ccccc-cccccccccCcceeEEeecCCCCCCcccccCC-c--chh---hHHHHhhhhhH
Q psy6316 160 YNWNTMNRRDVRDIIKSQE--SSVQT-HKTVESARKGQEICIKIEPIPGEAPKMFGRHF-D--END---FLVSKISRQSI 230 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~-~--~~~---~~~~~~~~e~~ 230 (259)
.... .....++... ...++ .++++||++|.|++.++..+..+.+.++.+.. . +.+ +.+.+++++++
T Consensus 211 ~~~~-----~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l 285 (353)
T 2x2e_A 211 DEGT-----DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 285 (353)
T ss_dssp CTTC-----CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred Ccch-----hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHH
Confidence 4321 1112222111 11233 56789999999999988777665555543321 1 222 55556655543
No 168
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=2.4e-18 Score=144.51 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=66.6
Q ss_pred CeEEEeCCCCcc-------------hHHHHHhhccCCCeEEEEEeC-CCCCCHHH-HHHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHES-------------FSNLRNRGSSLCDIAILVVDI-MHGLEPQT-IESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~-------------~~~~~~~~~~~ad~~i~v~d~-~~~~~~~~-~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++||||||+.. +......++..+|++++|+|+ +.+....+ ..++..+...+.|+++|+||+|+.
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~ 211 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM 211 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccC
Confidence 599999999653 556667788999999999997 44444333 467777777889999999999997
Q ss_pred CcccccchhhHHHHHhhhhccccc---ccccccccc---CcceeEEeec
Q psy6316 160 YNWNTMNRRDVRDIIKSQESSVQT---HKTVESARK---GQEICIKIEP 202 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~Sa~~---g~gv~~~l~~ 202 (259)
.... .....++.....++. +++.+||.+ +.|+.+++..
T Consensus 212 ~~~~-----~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 212 DKGT-----DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSSC-----CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred Ccch-----HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 4321 123333322222112 334556666 6666665443
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.77 E-value=2.4e-18 Score=146.97 Aligned_cols=151 Identities=22% Similarity=0.206 Sum_probs=94.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+.++|+++|.+|+|||||+|+|++.....+ ....++...... .+. .....+.+||||
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~-------~~~~~t~~~~~~-----~~~-----------~~~~~~~l~Dt~ 222 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIA-------SYPFTTRGINVG-----QFE-----------DGYFRYQIIDTP 222 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEE-------CCTTCSSCEEEE-----EEE-----------ETTEEEEEEECT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccC-------CCCCeeeceeEE-----EEE-----------ecCceEEEEeCC
Confidence 345799999999999999999987754211 111111111110 000 001128999999
Q ss_pred CCcchH---------HHHHhhccCCCeEEEEEeCCCCC--CHHH-HHHHHHHHh--CCCCEEEEEecccccCcccccchh
Q psy6316 103 GHESFS---------NLRNRGSSLCDIAILVVDIMHGL--EPQT-IESINILKS--KKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 103 G~~~~~---------~~~~~~~~~ad~~i~v~d~~~~~--~~~~-~~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
|+.... .........+|++++|+|+++.. +... ..++..+.. .+.|+++|+||+|+... .
T Consensus 223 G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~------~ 296 (357)
T 2e87_A 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE------E 296 (357)
T ss_dssp TTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH------H
T ss_pred CccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh------H
Confidence 964321 12223446799999999987754 4433 445555544 27999999999999732 2
Q ss_pred hHHHHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
++ ..........+++++++||++|+|+++++..+
T Consensus 297 ~~-~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i 330 (357)
T 2e87_A 297 NI-KRLEKFVKEKGLNPIKISALKGTGIDLVKEEI 330 (357)
T ss_dssp HH-HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHH
T ss_pred HH-HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHH
Confidence 22 12222333446788999999999998855444
No 170
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=6.8e-19 Score=142.18 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=72.8
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEe
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIID 100 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD 100 (259)
..+.++|+++|++|+|||||+|+|++..+........+ ++......... .....+.|||
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~i~liD 84 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-----ITKKCEKRSSS----------------WKETELVVVD 84 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------CCSCEEEEEE----------------ETTEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc-----eeeeEEEEEEE----------------eCCceEEEEE
Confidence 34456799999999999999999998876432211111 11111110000 0111299999
Q ss_pred CCCCc-----------chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh-----CCCCEEEEEecccccC
Q psy6316 101 TPGHE-----------SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS-----KKTPFVVALNKIDRLY 160 (259)
Q Consensus 101 tpG~~-----------~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~piivv~NK~D~~~ 160 (259)
|||.. .+...+..+++.+|++|+|+|++. ....+..++..+.. ...|+++|+||+|+..
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 99943 344444556678999999999874 34455555544432 3469999999999874
No 171
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.76 E-value=4e-19 Score=138.63 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=98.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|||||||+++|++..+...+..+++.+.......... ..+ .+.+|||||+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g-----~~~----------------~~~i~Dt~g~ 88 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG-----KTI----------------KAQIWDTAGL 88 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETT-----EEE----------------EEEEEEECSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC-----EEE----------------EEEEEECCCC
Confidence 5699999999999999999998876544444333222111111100 000 1678999999
Q ss_pred cchHHHHHhhccCCCeEEEEEeCCCCCCHHHH-HHHHHHHh---CCCCEEEEEecccccCcccccchhhHHHHHhhhhcc
Q psy6316 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI-ESINILKS---KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESS 180 (259)
Q Consensus 105 ~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 180 (259)
+.+...+..+++.++++++|+|.++..+.... .++..+.. .+.|+++++||+|+.... ... ......+...
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~-~~~----~~~a~~l~~~ 163 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVP----TDEARAFAEK 163 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSC----HHHHHHHHHH
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccC----HHHHHHHHHH
Confidence 88877777788899999999998765433332 24444432 467899999999986321 111 1223333444
Q ss_pred ccccccccccccCcceeEEee
Q psy6316 181 VQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 181 ~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
.++.++.+||+++.|+++++.
T Consensus 164 ~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 164 NGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp TTCEEEECCTTTCTTHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 456777899999999877543
No 172
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.75 E-value=4.8e-18 Score=155.71 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=92.9
Q ss_pred CeEEEeCCCCcc-------------hHHHHHhhc-cCCCeEEEEEeCCCCCCHHHH-HHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHES-------------FSNLRNRGS-SLCDIAILVVDIMHGLEPQTI-ESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~-------------~~~~~~~~~-~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++|+||||... +..+...++ ..+|++++|+|++.+....+. .++..+...+.|+++|+||+|+.
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM 230 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSS
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccC
Confidence 499999999332 333444444 689999999999987776666 68888888899999999999998
Q ss_pred CcccccchhhHHHHHh-hhh-cccc-ccccccccccCcceeEEeecCCC------CCCcccccCCcchhhHHHHhhhhhH
Q psy6316 160 YNWNTMNRRDVRDIIK-SQE-SSVQ-THKTVESARKGQEICIKIEPIPG------EAPKMFGRHFDENDFLVSKISRQSI 230 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~-~~~~-~~~i~~Sa~~g~gv~~~l~~i~~------~~~~~~~~~~~~~~~~~~~~~~e~~ 230 (259)
..... ...... +.. ...+ .+++++||++|.|++.++..+.. +.+++..-.-.+.++.+.+++||++
T Consensus 231 ~~~~~-----~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL 305 (772)
T 3zvr_A 231 DEGTD-----ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQL 305 (772)
T ss_dssp CTTCC-----SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHH
T ss_pred Ccchh-----hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHH
Confidence 53211 111111 111 1123 36778999999999998776654 2344311112467888999999876
Q ss_pred HH-HHHHHHh
Q psy6316 231 DA-CKDYFRD 239 (259)
Q Consensus 231 ~~-l~~~~~~ 239 (259)
-. +.+.++.
T Consensus 306 ~~hi~~ELP~ 315 (772)
T 3zvr_A 306 TNHIRDTLPG 315 (772)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhCcc
Confidence 33 3444444
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.75 E-value=1.8e-18 Score=158.52 Aligned_cols=131 Identities=20% Similarity=0.277 Sum_probs=87.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|+|||||+++|++........+.+............... ....+... ..........++||||||
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~-~giti~~~----~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKL-HRTTVRTG----VAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHH-TTSCCSCE----EEEEEETTEEEEEEECCC
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHh-cCCeEEec----ceEEeeCCEEEEEEeCCC
Confidence 4579999999999999999998554321111112000000000000000 00000000 000001112389999999
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
|.+|...+..+++.+|++++|+|++++...+...++..+...++|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 99999999999999999999999999999999999999999999999999999986
No 174
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=149.50 Aligned_cols=66 Identities=30% Similarity=0.392 Sum_probs=56.2
Q ss_pred CeEEEeCCCCcc-----------hHHHHHhhccCCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHES-----------FSNLRNRGSSLCDIAILVVDIMH-GLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~-----------~~~~~~~~~~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
+++||||||+.. |...+..++..+|++|+|+|+++ +....+..++..+...+.|+++|+||+|+..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 499999999764 55677778899999999999987 4677778888888888899999999999973
No 175
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=2.7e-18 Score=158.03 Aligned_cols=67 Identities=31% Similarity=0.426 Sum_probs=62.0
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
.++|||||||.+|...+..+++.+|++|+|+|++++...+....+..+...++|+++++||+|+...
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 4999999999999999999999999999999999998888888888888889999999999998753
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=2.8e-17 Score=151.14 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=103.1
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCccee------------eccccccCccccccccccccCCCCCCCCCCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQ------------QIGATNVPADAIRENTKHVRGPGGEVGGPGP 90 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (259)
+.++|+++|++|+|||||+++|+.........+.+.. ..+.+ ...... .+ .
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giT-i~~~~~-----~~-----------~ 73 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGIT-ITAAVT-----TC-----------F 73 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEE-----EE-----------E
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccc-cccceE-----EE-----------E
Confidence 4568999999999999999999843211000000000 00000 000000 00 1
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhH
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
+....++|||||||.+|...+..+++.+|++|+|+|++++...++...+..+...++|+++++||+|+... .....
T Consensus 74 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~----~~~~~ 149 (691)
T 1dar_A 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA----DLWLV 149 (691)
T ss_dssp ETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC----CHHHH
T ss_pred ECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC----CHHHH
Confidence 11123999999999999999999999999999999999999999999888898899999999999999743 23344
Q ss_pred HHHHhhhhcccc-ccccccccccCcceeEEeecC
Q psy6316 171 RDIIKSQESSVQ-THKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 171 ~~~~~~~~~~~~-~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+.++....... ...+++|+ +.++..++..+
T Consensus 150 ~~~l~~~l~~~~~~~~~Pi~~--~~~~~g~~d~~ 181 (691)
T 1dar_A 150 IRTMQERLGARPVVMQLPIGR--EDTFSGIIDVL 181 (691)
T ss_dssp HHHHHHTTCCCEEECEEEESC--GGGCCEEEETT
T ss_pred HHHHHHHhCCCccceeccccC--CCcccchhhhh
Confidence 444444433221 23457777 66666655543
No 177
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=3.4e-18 Score=147.45 Aligned_cols=62 Identities=16% Similarity=0.037 Sum_probs=34.7
Q ss_pred CCCCEEEEEecccccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEee-cC---CCCCCccccc
Q psy6316 145 KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIE-PI---PGEAPKMFGR 213 (259)
Q Consensus 145 ~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~-~i---~~~~~~~~~~ 213 (259)
..+|+++|+||+|+. . .. ....+.+.....+.+++++||+.+.|+.+++. .+ ....+++++.
T Consensus 213 ~~kP~i~v~NK~D~~-~-----~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~ 278 (397)
T 1wxq_A 213 VNKPMVIAANKADAA-S-----DE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVL 278 (397)
T ss_dssp HHSCEEEEEECGGGS-C-----HH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC--------
T ss_pred cCCCEEEEEeCcccc-c-----hH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCcccccc
Confidence 359999999999986 1 11 12222222222245788999999999987554 33 3444455544
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.73 E-value=1.6e-17 Score=135.97 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=72.7
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
++..+|+++|++|+|||||+|+|++....... ....++......... .....++||||
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~------~~~~~t~~~~~~~~~----------------~~~~~l~liDT 91 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS------PFQAEGLRPVMVSRT----------------MGGFTINIIDT 91 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC------SSCC-CCCCEEEEEE----------------ETTEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC------CCCCcceeeEEEEEE----------------ECCeeEEEEEC
Confidence 45667999999999999999999987652111 111111111110000 00112999999
Q ss_pred CCCcchHHHHHh-------hc--cCCCeEEEEEeCCC-CCCHHHHHHHHHHHhC-----CCCEEEEEeccccc
Q psy6316 102 PGHESFSNLRNR-------GS--SLCDIAILVVDIMH-GLEPQTIESINILKSK-----KTPFVVALNKIDRL 159 (259)
Q Consensus 102 pG~~~~~~~~~~-------~~--~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~-----~~piivv~NK~D~~ 159 (259)
||+.++...... ++ ..+|++++|++++. .....+..++..+... ..|+++|+||+|+.
T Consensus 92 pG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 92 PGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp CCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 998765422111 11 37899999998765 3455555666666553 24899999999985
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=7.5e-18 Score=143.77 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=85.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
+.|+++|.+|||||||+|+|++..+.. .+...++..+........ ...+.+|||||+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~-------~~~~~~T~d~~~~~i~~~----------------g~~v~l~DT~G~ 236 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKV-------DTKLFTTMSPKRYAIPIN----------------NRKIMLVDTVGF 236 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------------CCSCEEEEEET----------------TEEEEEEECCCB
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccc-------cCCcccccCCEEEEEEEC----------------CEEEEEEeCCCc
Confidence 359999999999999999999876421 111112221111110000 012899999995
Q ss_pred cc---------hHHHHHhhccCCCeEEEEEeCCCCC--CHHHH----HHHHHHHhCCCCEEEEEecccccCcccccchhh
Q psy6316 105 ES---------FSNLRNRGSSLCDIAILVVDIMHGL--EPQTI----ESINILKSKKTPFVVALNKIDRLYNWNTMNRRD 169 (259)
Q Consensus 105 ~~---------~~~~~~~~~~~ad~~i~v~d~~~~~--~~~~~----~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~ 169 (259)
.. |.. ....+..+|++++|+|+++.. ..... ..+..+...+.|+++|+||+|+.... ...
T Consensus 237 i~~lp~~lve~f~~-tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~----~~~ 311 (364)
T 2qtf_A 237 IRGIPPQIVDAFFV-TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD----LYK 311 (364)
T ss_dssp CSSCCGGGHHHHHH-HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC----HHH
T ss_pred hhcCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch----HHH
Confidence 21 322 234578999999999997753 22222 22333333578999999999997421 111
Q ss_pred HHHHHhhhhccc---cccccccccccCcceeEEee
Q psy6316 170 VRDIIKSQESSV---QTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 170 ~~~~~~~~~~~~---~~~~i~~Sa~~g~gv~~~l~ 201 (259)
....+..+...+ +.+++++||++|.|++.++.
T Consensus 312 ~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 312 KLDLVEKLSKELYSPIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp HHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHH
Confidence 111221111111 34568999999999987443
No 180
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=1e-17 Score=156.91 Aligned_cols=65 Identities=32% Similarity=0.450 Sum_probs=61.1
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
++|||||||.+|...+..+++.+|++|+|+|++++.+.++...+.++...++|+++++||+|+..
T Consensus 100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 99999999999999999999999999999999999999998888888888999999999999873
No 181
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.72 E-value=1.5e-17 Score=153.65 Aligned_cols=67 Identities=31% Similarity=0.374 Sum_probs=64.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~ 161 (259)
.++|+|||||.+|.......++.+|++|+|+|+.++...++...|+++...++|.++++||+|....
T Consensus 86 ~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 86 RVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 3999999999999999999999999999999999999999999999999999999999999999754
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=1.3e-17 Score=153.44 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred CeEEEeCCCCcc---hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHH-HHHhCCCCEEEEEecccccC
Q psy6316 95 GLLIIDTPGHES---FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN-ILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 95 ~~~liDtpG~~~---~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~-~~~~~~~piivv~NK~D~~~ 160 (259)
+++||||||... ....+..++..+|++|+|+|++++.+..+..++. .+...+.|+++|+||+|+..
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 499999999544 3455667889999999999999888888877664 55667889999999999874
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.72 E-value=2e-17 Score=141.51 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=72.3
Q ss_pred CeEEEeCCCCcch-------------HHHHHhhccCCCeEEEEEeCCCCC--CHHHHHHHHHHHhCCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESF-------------SNLRNRGSSLCDIAILVVDIMHGL--EPQTIESINILKSKKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~--~~~~~~~l~~~~~~~~piivv~NK~D~~ 159 (259)
+++||||||...+ ......++..+|++|+|+|+.... ......++..+...+.|+++|+||+|+.
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~ 216 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLM 216 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGC
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccC
Confidence 4999999997665 566777889999999999875422 2233556666666788999999999998
Q ss_pred CcccccchhhHHHHHhhhhccccccccccccccCcceeEE
Q psy6316 160 YNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIK 199 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~ 199 (259)
... ......++......+..++.+|++++.+++..
T Consensus 217 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 217 DKG-----TDAVEILEGRSFKLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp CTT-----CCSHHHHTTSSSCCSSCCEEECCCCHHHHHTT
T ss_pred CCc-----ccHHHHHcCccccccCCeEEEEECChHHhccC
Confidence 432 12233344445556678889999999988753
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.72 E-value=1.3e-17 Score=131.75 Aligned_cols=151 Identities=18% Similarity=0.217 Sum_probs=91.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|++|||||||+|+|++..+.... ....+.+.. ..... . + +.+.+|||||
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~----~~~~G~~~~-~~~~~-----~---~-----------~~~~l~Dt~G 81 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLART----SKTPGRTQL-INLFE-----V---A-----------DGKRLVDLPG 81 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-----------------CC-EEEEE-----E---E-----------TTEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccc----cCCCcccee-eEEEE-----e---c-----------CCEEEEECcC
Confidence 346999999999999999999876532111 111111111 00000 0 0 0289999999
Q ss_pred Ccc----------hHHHHHhhc---cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhH
Q psy6316 104 HES----------FSNLRNRGS---SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 104 ~~~----------~~~~~~~~~---~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
+.. +......++ ..++++++|+|++.+.+..+......+...+.|++++.||+|+.... .++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~---~~~~~ 158 (210)
T 1pui_A 82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASG---ARKAQ 158 (210)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHH---HHHHH
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCch---hHHHH
Confidence 742 222222333 57899999999988777665566666677889999999999987421 11111
Q ss_pred HHHHhhhhccc--cccccccccccCcceeEEee
Q psy6316 171 RDIIKSQESSV--QTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 171 ~~~~~~~~~~~--~~~~i~~Sa~~g~gv~~~l~ 201 (259)
...+....... .+..+++||+++.|+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHH
Confidence 22233333222 34667899999999987544
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=130.04 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=71.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
+.++|+++|.+|+|||||+++|++..+... ........... +....+.+||||
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~~~~~~~~~~~-----------------------~~~~~~~l~Dt~ 99 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAAD-----------------------YDGSGVTLVDFP 99 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------C-----------------------CCCTTCSEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc----cccCCCceeee-----------------------ecCCeEEEEECC
Confidence 356799999999999999999998765321 00000000000 011139999999
Q ss_pred CCcchHHHHHhhccC----CCeEEEEEeCC-CCCCHHH-HHHHHHHH-------hCCCCEEEEEecccccCc
Q psy6316 103 GHESFSNLRNRGSSL----CDIAILVVDIM-HGLEPQT-IESINILK-------SKKTPFVVALNKIDRLYN 161 (259)
Q Consensus 103 G~~~~~~~~~~~~~~----ad~~i~v~d~~-~~~~~~~-~~~l~~~~-------~~~~piivv~NK~D~~~~ 161 (259)
|+..+...+..++.. +|++++|+|++ +..+... ..++..+. ..+.|+++|+||+|+...
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 988876666666554 89999999998 3222222 12332222 147999999999999743
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=9.4e-18 Score=143.27 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=75.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCC-CcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEA-GGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+|+++|++|+|||||+|+|++........ ......... +....... ..+. .+ -....+++|||||
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~-ti~~~~~~---~~~~-~~--------~~~~~l~i~DTpG 104 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIER-TVQIEAST---VEIE-ER--------GVKLRLTVVDTPG 104 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----------------CEEEEEEE---EC-------------CEEEEEEEEC---
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCC-ceeEEEEE---EEee-cC--------CcccceEEEEecc
Confidence 459999999999999999987654321110 000000000 00000000 0000 00 0001289999999
Q ss_pred C-------cchHHHHH-------hhcc-------------CCCeEEEEEeC-CCCCCHHHHHHHHHHHhCCCCEEEEEec
Q psy6316 104 H-------ESFSNLRN-------RGSS-------------LCDIAILVVDI-MHGLEPQTIESINILKSKKTPFVVALNK 155 (259)
Q Consensus 104 ~-------~~~~~~~~-------~~~~-------------~ad~~i~v~d~-~~~~~~~~~~~l~~~~~~~~piivv~NK 155 (259)
+ +.+..++. .+++ .+|+++|+++. ..+....+..++..+. .++|+|+|+||
T Consensus 105 ~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK 183 (361)
T 2qag_A 105 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 183 (361)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEEC
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEEC
Confidence 8 44433332 3332 24578888886 4556666666666653 57899999999
Q ss_pred ccccCcccccchhhHHHHHhhhhccccccccccccccCcceeEE
Q psy6316 156 IDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIK 199 (259)
Q Consensus 156 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~ 199 (259)
+|+.... ........+.......+++++++||++|.| ++.
T Consensus 184 ~Dl~~~~---ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 184 ADTLTLK---ERERLKKRILDEIEEHNIKIYHLPDAESDE-DED 223 (361)
T ss_dssp CSSSCHH---HHHHHHHHHHHHTTCC-CCSCCCC----------
T ss_pred CCCCCHH---HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chh
Confidence 9997421 122223455666666788999999999998 543
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.67 E-value=5.5e-16 Score=127.36 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=72.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
..+|+++|.+|+|||||+|+|++..+..... ..+ ++........... ...+.||||||
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-----~~~-~t~~~~~~~~~~~----------------~~~l~iiDTpG 96 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISP-----FQS-EGPRPVMVSRSRA----------------GFTLNIIDTPG 96 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-----SSC-CCSSCEEEEEEET----------------TEEEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccC-----CCC-cceeeEEEEEeeC----------------CeEEEEEECCC
Confidence 4569999999999999999999876531110 011 1111100000000 11299999999
Q ss_pred CcchHH-------HHHhh--ccCCCeEEEEEeCCC-CCCHHHHHHHHHHHhC-C----CCEEEEEecccccC
Q psy6316 104 HESFSN-------LRNRG--SSLCDIAILVVDIMH-GLEPQTIESINILKSK-K----TPFVVALNKIDRLY 160 (259)
Q Consensus 104 ~~~~~~-------~~~~~--~~~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~-~----~piivv~NK~D~~~ 160 (259)
+.++.. .+..+ ...+|++++|+|++. .....+..++..+... + .|+++|+||+|+..
T Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 97 LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 765431 11122 347999999998865 4555566777766543 2 69999999999864
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=1.9e-17 Score=141.24 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=64.1
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
+++||||||... .....+..+|++++|+|++.+...+... . .....|+++|+||+|+.... ........+
T Consensus 173 ~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~~~~---~~~~~~~~l 242 (355)
T 3p32_A 173 DVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGEHHK---EARLAAREL 242 (355)
T ss_dssp CEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGGGHH---HHHHHHHHH
T ss_pred CEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCcChh---HHHHHHHHH
Confidence 599999999543 2234458999999999987643321111 0 11246999999999986321 111122222
Q ss_pred hhhhc-------cccccccccccccCcceeEEeecCCCC
Q psy6316 175 KSQES-------SVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 175 ~~~~~-------~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
..... .++.+++++||++|.|+++++..+...
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 22211 234678899999999999977666443
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=129.84 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=80.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|++|+|||||+|.|++..+......+.......+ .. ......+... ......+++|||||.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t-~~----~~~i~~v~q~--------~~~~~~Ltv~Dt~g~ 98 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKT-VQ----VEQSKVLIKE--------GGVQLLLTIVDTPGF 98 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----C-CE----EEEEECC--------------CEEEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccc-ee----eeeEEEEEec--------CCcccceeeeechhh
Confidence 4599999999999999999998765211111111000000 00 0000000000 000113899999996
Q ss_pred cchH-------HHH------------------HhhccC--CCeEEEEEeCC-CCCCHHHHHHHHHHHhCCCCEEEEEecc
Q psy6316 105 ESFS-------NLR------------------NRGSSL--CDIAILVVDIM-HGLEPQTIESINILKSKKTPFVVALNKI 156 (259)
Q Consensus 105 ~~~~-------~~~------------------~~~~~~--ad~~i~v~d~~-~~~~~~~~~~l~~~~~~~~piivv~NK~ 156 (259)
..+. ... ..++.. +|++||+++++ .++...+..++..+.. ++|+|+|+||+
T Consensus 99 ~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 99 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEEST
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcc
Confidence 5431 110 112233 45677777776 5778878778887765 79999999999
Q ss_pred cccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEeecCCCC
Q psy6316 157 DRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIPGE 206 (259)
Q Consensus 157 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~ 206 (259)
|+.... ........+.......+++++.+||.++.+++..+..+...
T Consensus 178 Dll~~~---ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 178 DTLTPE---ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp TSSCHH---HHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred cCccHH---HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 997321 22223344555555567889999999999998765555443
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=1.3e-16 Score=135.54 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=68.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccc-cchhhHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNT-MNRRDVRDI 173 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~-~~~~~~~~~ 173 (259)
++.|+||||.... .......+|++++|+|++.+...+ .+.. .....|.++|+||+|+...... .....+...
T Consensus 168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~ 240 (349)
T 2www_A 168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQ---GIKR-GIIEMADLVAVTKSDGDLIVPARRIQAEYVSA 240 (349)
T ss_dssp SEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHH---HhHH-HHHhcCCEEEEeeecCCCchhHHHHHHHHHHH
Confidence 4999999995321 133457899999999987643221 1111 1135688999999998631100 000111111
Q ss_pred Hhhhhc---cccccccccccccCcceeEEeecCCCCCCcccccCC------cchhhHHHHhhhhhH
Q psy6316 174 IKSQES---SVQTHKTVESARKGQEICIKIEPIPGEAPKMFGRHF------DENDFLVSKISRQSI 230 (259)
Q Consensus 174 ~~~~~~---~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~~~~~~~~------~~~~~~~~~~~~e~~ 230 (259)
+..... .+..+++++||++|.|+++++..+....+.++.+++ ....+++.+++++.+
T Consensus 241 l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~ 306 (349)
T 2www_A 241 LKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESV 306 (349)
T ss_dssp HTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 123467889999999999877666443333333222 133455555555555
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=1.4e-15 Score=126.80 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=77.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcc-eeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGI-TQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
.+|+++|++|+|||||+++|++........... +..... +.... ........ ......+++|||||
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~-t~~~~----~~~~~~q~--------~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIER-TVQIE----ASTVEIEE--------RGVKLRLTVVDTPG 85 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------CEEEEC-----------CCEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCC-cceEe----eEEEEecC--------CCcccCcchhhhhh
Confidence 459999999999999999998763221111000 000000 00000 00000000 00011389999999
Q ss_pred C-------cchHHHHH-------hhcc-------------CCCeEEEEEeCCC-CCCHHHHHHHHHHHhCCCCEEEEEec
Q psy6316 104 H-------ESFSNLRN-------RGSS-------------LCDIAILVVDIMH-GLEPQTIESINILKSKKTPFVVALNK 155 (259)
Q Consensus 104 ~-------~~~~~~~~-------~~~~-------------~ad~~i~v~d~~~-~~~~~~~~~l~~~~~~~~piivv~NK 155 (259)
+ +.+..... .+++ .+++++|+.+++. ++...+.+.+..+. ...|+++|+||
T Consensus 86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K 164 (301)
T 2qnr_A 86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 164 (301)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECC
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEe
Confidence 7 44333332 2221 2455677777654 47777766666554 35799999999
Q ss_pred ccccCcccccchhhHHHHHhhhhccccccccccccccCcceeEEeec
Q psy6316 156 IDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEP 202 (259)
Q Consensus 156 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~ 202 (259)
.|+.... ......+.........++.++++||++| |+++.+..
T Consensus 165 ~Dl~~~~---e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~ 207 (301)
T 2qnr_A 165 ADTLTLK---ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKE 207 (301)
T ss_dssp GGGSCHH---HHHHHHHHHHHHHHHTTCCCCCCC----------CHH
T ss_pred CCCCCHH---HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHH
Confidence 9997321 1122234455555566788999999999 99986643
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.60 E-value=8.6e-17 Score=128.03 Aligned_cols=170 Identities=11% Similarity=0.075 Sum_probs=89.5
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCC----------CCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPG----------PLE 92 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 92 (259)
+.++|+++|.+|+|||||+++|++..........+..+.+.+ ................+....+.. ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK-ADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH-HHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc-hhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456899999999999999999987643221111111111100 000000000000000000000000 112
Q ss_pred CCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHH
Q psy6316 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 93 ~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~ 172 (259)
..++.+|||+|+.... ..+....+.+++|+|++.+.... +......+.|+++|+||+|+.... ....++...
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~~ 179 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAEAV-GADVEKMKA 179 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHHHH-TCCHHHHHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCcch-hhHHHHHHH
Confidence 3359999999952111 01113578999999998764321 122223468999999999986321 112333444
Q ss_pred HHhhhhccccccccccccccCcceeEEeecC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+... ...++++++||++|.|+++++..+
T Consensus 180 ~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l 208 (221)
T 2wsm_A 180 DAKLI--NPRAKIIEMDLKTGKGFEEWIDFL 208 (221)
T ss_dssp HHHHH--CTTSEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHh--CCCCeEEEeecCCCCCHHHHHHHH
Confidence 44333 124678899999999998755443
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.57 E-value=3.8e-15 Score=128.80 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=89.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|++|||||||+++|++.... ...+..++..+.. ..+...+ ...+++||+||+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~-------i~~~~ftTl~p~~-----G~V~~~~----------~~~~~l~DtpGl 215 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPK-------IAPYPFTTLSPNL-----GVVEVSE----------EERFTLADIPGI 215 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCE-------ECCCTTCSSCCEE-----EEEECSS----------SCEEEEEECCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcc-------ccCcccceeccee-----eEEEecC----------cceEEEEecccc
Confidence 45999999999999999999876431 1111111111110 0010000 013899999996
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHH-HHHHHHh-----CCCCEEEEEecccccCcccccchhhHH
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIE-SINILKS-----KKTPFVVALNKIDRLYNWNTMNRRDVR 171 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~-~l~~~~~-----~~~piivv~NK~D~~~~~~~~~~~~~~ 171 (259)
.. +.......+..++.+++|+|++ .....+.. +..++.. ...|.++++||+|+.. . ...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~------~-~~~ 287 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE------E-EAV 287 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC------H-HHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh------H-HHH
Confidence 42 2222334456899999999997 22222222 2233322 3589999999999873 2 223
Q ss_pred HHHhhhhccccccccccccccCcceeEEeecC
Q psy6316 172 DIIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 172 ~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
..+.......++.++.+||+++.|+++++..+
T Consensus 288 ~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 288 KALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 33333333445788999999999998865444
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=8.2e-16 Score=130.40 Aligned_cols=101 Identities=19% Similarity=0.060 Sum_probs=60.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
+++||||||....... ....+|++++|+|++.+...+ .+.. ...+.|.++|+||+|+.... ........+
T Consensus 150 ~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~---~l~~-~~~~~p~ivv~NK~Dl~~~~---~~~~~~~~l 219 (341)
T 2p67_A 150 DVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQ---GIKK-GLMEVADLIVINKDDGDNHT---NVAIARHMY 219 (341)
T ss_dssp SEEEEEEECCTTHHHH---HHTTCSEEEEEECC------C---CCCH-HHHHHCSEEEECCCCTTCHH---HHHHHHHHH
T ss_pred CEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHH---HHHH-hhhcccCEEEEECCCCCChH---HHHHHHHHH
Confidence 4999999997654432 458999999999987542211 1110 11246889999999987321 111111122
Q ss_pred hh----hh---ccccccccccccccCcceeEEeecCCC
Q psy6316 175 KS----QE---SSVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 175 ~~----~~---~~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
+. +. ..+..+++++||++|.|++.++..+..
T Consensus 220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~ 257 (341)
T 2p67_A 220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 257 (341)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 22 11 112346779999999999987766544
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.52 E-value=1.4e-14 Score=118.11 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=63.1
Q ss_pred CeEEEeCCCCcchHHH------HHhhccCCCeEEEEEeCCCCCCHHHHHH-----HHHHHhCCCCEEEEEecccccCccc
Q psy6316 95 GLLIIDTPGHESFSNL------RNRGSSLCDIAILVVDIMHGLEPQTIES-----INILKSKKTPFVVALNKIDRLYNWN 163 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~------~~~~~~~ad~~i~v~d~~~~~~~~~~~~-----l~~~~~~~~piivv~NK~D~~~~~~ 163 (259)
+++||||||+...... ....+.. +++++++|+.......+... .......+.|+++|+||+|+.....
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccccc
Confidence 4999999997664322 2235566 99999999876655544321 1223345789999999999874211
Q ss_pred ccchhhHHHHHh-------hh-----------------hccc--cccccccccccCcceeEEee
Q psy6316 164 TMNRRDVRDIIK-------SQ-----------------ESSV--QTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 164 ~~~~~~~~~~~~-------~~-----------------~~~~--~~~~i~~Sa~~g~gv~~~l~ 201 (259)
.++..+.++ .+ ...+ ..+++++||++|.|+++++.
T Consensus 189 ---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 189 ---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp ---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred ---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 111111111 00 1111 23778999999999987544
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=1e-13 Score=117.43 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=52.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCC--CcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEA--GGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+|+++|.+|+|||||+|+|++..+..... .++....+....+-.... ...... .|.......+.|||||
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~-~l~~~~-------~~~~~~~~~i~lvDtp 74 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLD-ALAEIV-------KPERILPTTMEFVDIA 74 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHH-HHHHHH-------CCSEEECCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccc-eeeeee-------cccceeeeEEEEEECC
Confidence 359999999999999999999876422111 122222221111100000 000000 0000001129999999
Q ss_pred CCcchHHH-------HHhhccCCCeEEEEEeCCC
Q psy6316 103 GHESFSNL-------RNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 103 G~~~~~~~-------~~~~~~~ad~~i~v~d~~~ 129 (259)
|+..+... ...+++.+|++++|+|+++
T Consensus 75 Gl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 75 GLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp SCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 98765422 3345789999999999986
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.45 E-value=6.7e-14 Score=119.21 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=54.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCC--CCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGE--AGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+|+++|.+|+|||||+|+|++....... ..++....+....+..........+.... . .| ......+.||||||
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~-~--~~-~~~~~~i~lvDtpG 78 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE-R--VP-PVVPTHVEFVDIAG 78 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTT-B--CC-CEECCEEEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccc-c--cc-ccCCceEEEEECCC
Confidence 4999999999999999999876531111 11222222222111100000000000000 0 00 00111399999999
Q ss_pred Ccch-------HHHHHhhccCCCeEEEEEeCCC
Q psy6316 104 HESF-------SNLRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 104 ~~~~-------~~~~~~~~~~ad~~i~v~d~~~ 129 (259)
+... .......++.+|++++|+|+++
T Consensus 79 l~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 79 LVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6543 3445567899999999999975
No 198
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.44 E-value=1.9e-14 Score=122.02 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=73.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC----------CH-HHHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL----------EP-QTIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~----------~~-~~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+|||+|++.+...|..+++.++++|+|+|.++.. +. ....++..+.. .+.|+++++||+|+.
T Consensus 194 ~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 194 HFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp EEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred eEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence 4889999999999999999999999999999998732 11 22334454443 368999999999985
Q ss_pred Cccc--------------ccchhhHHHHHhh----hh---ccccccccccccccCcceeEEee
Q psy6316 160 YNWN--------------TMNRRDVRDIIKS----QE---SSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 160 ~~~~--------------~~~~~~~~~~~~~----~~---~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
...- ....++....+.. +. ...++.++++||++|.|+.+.+.
T Consensus 274 ~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 274 EEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp HHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred hhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 2110 0122333333321 11 12456778899999999977443
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.3e-13 Score=117.41 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=70.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..|+++|.||||||||+|+|++.+.. ...+..+|..+...... +...+++|+||||.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~-------v~~~pftT~~~~~g~~~----------------~~~~~i~l~D~pGl 129 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE-------AAEYEFTTLVTVPGVIR----------------YKGAKIQMLDLPGI 129 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC-------GGGTCSSCCCEEEEEEE----------------ETTEEEEEEECGGG
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc-------ccCCCCceeeeeeEEEE----------------eCCcEEEEEeCCCc
Confidence 46999999999999999999987642 23333333332211111 11113999999994
Q ss_pred cc-------hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHH-HHHHHh-----CCCCEEEEEeccccc
Q psy6316 105 ES-------FSNLRNRGSSLCDIAILVVDIMHGLEPQTIES-INILKS-----KKTPFVVALNKIDRL 159 (259)
Q Consensus 105 ~~-------~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~-l~~~~~-----~~~piivv~NK~D~~ 159 (259)
.. ........++.||++++|+|++++.. +.+. ...+.. ...|.++++||+|..
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 22 23345566789999999999976422 2222 223332 357888999999974
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.39 E-value=6.8e-14 Score=111.53 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=86.3
Q ss_pred cccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCcccccc---cc-----ccccCCCC----CCCCCCC
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRE---NT-----KHVRGPGG----EVGGPGP 90 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~----~~~~~~~ 90 (259)
+.++|+++|.+|+|||||+++|+...+...+...+..+.+.+ ........ .. ........ .......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAK-FDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTH-HHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCC-ccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 457799999999999999999987755443333333333210 00000000 00 00000000 0000000
Q ss_pred CCCCCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhH
Q psy6316 91 LEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDV 170 (259)
Q Consensus 91 ~~~~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~ 170 (259)
....++.++|++|..... ..+-...+..+.++|+..+..... ... ...+.|.++|+||+|+.... ....++.
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~-~~~---~~~~~~~iiv~NK~Dl~~~~-~~~~~~~ 187 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE-KHP---GIMKTADLIVINKIDLADAV-GADIKKM 187 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT-TCH---HHHTTCSEEEEECGGGHHHH-TCCHHHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh-hhh---hHhhcCCEEEEeccccCchh-HHHHHHH
Confidence 111249999999942211 122235567788888643221111 011 11368999999999986321 1122333
Q ss_pred HHHHhhhhccccccccccccccCcceeEEee
Q psy6316 171 RDIIKSQESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
...+... ....+++++||++|.|+++++.
T Consensus 188 ~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~ 216 (226)
T 2hf9_A 188 ENDAKRI--NPDAEVVLLSLKTMEGFDKVLE 216 (226)
T ss_dssp HHHHHHH--CTTSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHh--CCCCeEEEEEecCCCCHHHHHH
Confidence 3333332 1246788999999999987554
No 201
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.38 E-value=1.2e-13 Score=115.52 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=69.1
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCC-------CCCC---H-HHHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIM-------HGLE---P-QTIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~-------~~~~---~-~~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+|||+|++.++..|..+++.++++|+|+|.+ +..+ . ....++..+.. .+.|+++++||+|+.
T Consensus 168 ~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp EEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred eeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhh
Confidence 3889999999999999999999999999999775 2211 1 12334444433 468999999999986
Q ss_pred Cccc---------------ccchhhHHHHHhhh------hccccccccccccccCcceeEEe
Q psy6316 160 YNWN---------------TMNRRDVRDIIKSQ------ESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 160 ~~~~---------------~~~~~~~~~~~~~~------~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
...- ....++..+.+... ....++.++.+||+++.|+...+
T Consensus 248 ~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF 309 (327)
T 3ohm_A 248 EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF 309 (327)
T ss_dssp HHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHH
Confidence 4210 11222222222111 12234566679999998887644
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=1.7e-13 Score=115.85 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=57.1
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
++.|+||||...-.. .....+|++++|+|+..+.. ...+.. .....+.++++||+|+..... ......+.+
T Consensus 149 ~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~~i~~-~i~~~~~ivvlNK~Dl~~~~~--~s~~~~~~l 219 (337)
T 2qm8_A 149 DVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQGIKK-GIFELADMIAVNKADDGDGER--RASAAASEY 219 (337)
T ss_dssp CEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCSTTCCHH--HHHHHHHHH
T ss_pred CEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HHHHHH-HHhccccEEEEEchhccCchh--HHHHHHHHH
Confidence 599999999643221 23478999999999864321 110000 001246788889999752110 011112222
Q ss_pred hhhh---c----cccccccccccccCcceeEEeecCCC
Q psy6316 175 KSQE---S----SVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 175 ~~~~---~----~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
.... . .+..+++++||++|.|+++++..+..
T Consensus 220 ~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 220 RAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp HHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 2211 1 12346778999999999987665543
No 203
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.32 E-value=3.8e-13 Score=112.02 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=76.9
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCC-CHHH-HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL-EPQT-IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~-~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
+.+||| +++|..++..+++.+|++|+|+|+++.. +... ..++..+...++|+++|+||+|+.... ..++..+.
T Consensus 65 ~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~---~v~~~~~~ 139 (301)
T 1u0l_A 65 GVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED---DLRKVREL 139 (301)
T ss_dssp EEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH---HHHHHHHH
T ss_pred EEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch---hHHHHHHH
Confidence 999999 8899999999999999999999999765 4443 345666666789999999999997321 11112222
Q ss_pred HhhhhccccccccccccccCcceeEEeecCCCCCC
Q psy6316 174 IKSQESSVQTHKTVESARKGQEICIKIEPIPGEAP 208 (259)
Q Consensus 174 ~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~~ 208 (259)
.+.+. .. +.++++||++|.|+++++..+..+..
T Consensus 140 ~~~~~-~~-~~~~~~SAktg~gv~~lf~~l~geiv 172 (301)
T 1u0l_A 140 EEIYS-GL-YPIVKTSAKTGMGIEELKEYLKGKIS 172 (301)
T ss_dssp HHHHT-TT-SCEEECCTTTCTTHHHHHHHHSSSEE
T ss_pred HHHHh-hh-CcEEEEECCCCcCHHHHHHHhcCCeE
Confidence 22222 12 78889999999999987665554433
No 204
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.32 E-value=1.8e-13 Score=117.00 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=85.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++.................++....... .+. .+.++||||.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--------~~~-----------~~~liDtPG~ 221 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--------LDE-----------ESSLYDTPGI 221 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--------SSS-----------SCEEEECCCB
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--------ecC-----------CeEEEeCCCc
Confidence 459999999999999999998875321000111111111222111110 011 2899999994
Q ss_pred cchH-------H-HHHhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 105 ESFS-------N-LRNRG--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 105 ~~~~-------~-~~~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
.... . ..... ....+.+++++++...........+..+...+.|+++++||+|... ..+.....
T Consensus 222 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~------~~~~~~~~ 295 (368)
T 3h2y_A 222 INHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH------RTKLEKAD 295 (368)
T ss_dssp CCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE------EEEHHHHH
T ss_pred CcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc------cccHHHHH
Confidence 3211 1 11111 3678999999998533222222234445566789999999999984 23334444
Q ss_pred hhhhccccccccccccccCcceeEEe
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
+.+.+..+....+.++..+.++..+.
T Consensus 296 ~~~~~~~g~~l~p~~~~~~~~~~~l~ 321 (368)
T 3h2y_A 296 ELYKNHAGDLLSPPTPEELENMPELV 321 (368)
T ss_dssp HHHHHHBTTTBCSSCHHHHHTSCCEE
T ss_pred HHHHHHhCCccCCCchhhHhhccCcE
Confidence 44444445566667776666665544
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.31 E-value=1.9e-12 Score=108.65 Aligned_cols=66 Identities=23% Similarity=0.185 Sum_probs=51.4
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCC----------CCCCHH-HHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIM----------HGLEPQ-TIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~~~~-~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+|||+|++.++..|..+++.++++|+|+|.+ +..+.. ...++..+.. .+.|+++++||+|+.
T Consensus 162 ~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 162 PFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp EEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred eeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhh
Confidence 4899999999999999999999999999999997 221221 2334444432 468999999999986
Q ss_pred C
Q psy6316 160 Y 160 (259)
Q Consensus 160 ~ 160 (259)
.
T Consensus 242 ~ 242 (340)
T 4fid_A 242 E 242 (340)
T ss_dssp H
T ss_pred h
Confidence 3
No 206
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.29 E-value=1.4e-13 Score=117.76 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=84.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+|+++|.+|+|||||+|+|++........ ........++....... .+. .+.++||||.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~-~~~~~~~gtT~~~~~~~--------~~~-----------~~~liDtPG~ 222 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNV-ITTSYFPGTTLDMIEIP--------LES-----------GATLYDTPGI 222 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCC-CEEEECTTSSCEEEEEE--------CST-----------TCEEEECCSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccc-eeecCCCCeEEeeEEEE--------eCC-----------CeEEEeCCCc
Confidence 459999999999999999998762111000 11111111221111100 111 2899999994
Q ss_pred cchH---H-----HHHhhc--cCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHH
Q psy6316 105 ESFS---N-----LRNRGS--SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174 (259)
Q Consensus 105 ~~~~---~-----~~~~~~--~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~ 174 (259)
.... . .....+ ...|.+++++++...........+..+...+.|+++++||+|..... ..+...+.+
T Consensus 223 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~---~~~~~~~~~ 299 (369)
T 3ec1_A 223 INHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRT---KLEKADSLY 299 (369)
T ss_dssp CCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE---EGGGHHHHH
T ss_pred CcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccc---cHHHHHHHH
Confidence 3211 1 111122 67899999999853311112223444556678999999999998432 222233333
Q ss_pred hhhhccccccccccccccCcceeEEe
Q psy6316 175 KSQESSVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 175 ~~~~~~~~~~~i~~Sa~~g~gv~~~l 200 (259)
+ ...+....+.++....++..+.
T Consensus 300 ~---~~~g~~l~p~~~~~~~~~~~l~ 322 (369)
T 3ec1_A 300 A---NQLGELLSPPSKRYAAEFPPLV 322 (369)
T ss_dssp H---HHBTTTBCSSCGGGTTTCCCEE
T ss_pred H---HhcCCccCCCCchhhhhccCcE
Confidence 3 3334566667777777766544
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=8.8e-12 Score=107.51 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=78.1
Q ss_pred EEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCCc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHE 105 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 105 (259)
+++|+|++|+|||||+|.|++..+.... +.. ............+.... .....++++|+||..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~---~~~------~~~~~~~~~i~~v~Q~~--------~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEP---ATH------TQPGVQLQSNTYDLQES--------NVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC----------------CCSSCEEEEEEEEEEC----------CEEEEEEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCc---CCC------CCccceEeeEEEEeecC--------ccccccchhhhhhhh
Confidence 4899999999999999999987532111 000 00000000001000000 000128999999953
Q ss_pred ch--------------HHHH----Hhh---------ccC--CC-eEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEec
Q psy6316 106 SF--------------SNLR----NRG---------SSL--CD-IAILVVDIMHGLEPQTIESINILKSKKTPFVVALNK 155 (259)
Q Consensus 106 ~~--------------~~~~----~~~---------~~~--ad-~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK 155 (259)
.. ...+ ... ... +| +++|+.|+..+....+.++++.+. .+.|+|+|+||
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~K 185 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAK 185 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESC
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcc
Confidence 21 1111 111 112 23 366677877788888888888887 78999999999
Q ss_pred ccccCcccccchhhHHHHHhhhhcccccccccccc
Q psy6316 156 IDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESA 190 (259)
Q Consensus 156 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 190 (259)
+|.+... +.......+.......++.++.+|.
T Consensus 186 tD~Lt~~---E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 186 ADAISKS---ELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp GGGSCHH---HHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hhccchH---HHHHHHHHHHHHHHHcCCcEEecCC
Confidence 9998432 2344444455433444666666664
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.23 E-value=6.8e-11 Score=96.75 Aligned_cols=123 Identities=18% Similarity=0.266 Sum_probs=70.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
.+++++|++|||||||+|.|++...... +.+... + ...+..........+... ......++++|+||.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G~i~~~-g-~~i~~~~~~~~i~~v~q~--------~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--ASSWNR-E-EKIPKTVEIKAIGHVIEE--------GGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEESCC------------CCEEEEECCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--CccccC-C-cccCcceeeeeeEEEeec--------CCCcCCceEEechhh
Confidence 4699999999999999999987653211 001000 0 000000000001111100 011123899999993
Q ss_pred cc----------hHHH--------HHh----------hccCCCeEEEEEeCC-CCCCHHHHHHHHHHHhCCCCEEEEEec
Q psy6316 105 ES----------FSNL--------RNR----------GSSLCDIAILVVDIM-HGLEPQTIESINILKSKKTPFVVALNK 155 (259)
Q Consensus 105 ~~----------~~~~--------~~~----------~~~~ad~~i~v~d~~-~~~~~~~~~~l~~~~~~~~piivv~NK 155 (259)
.. .... ... .+..+++.++++|.. .+....+.+.+..+... .++|+|+||
T Consensus 71 g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 71 GDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp -CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETT
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEec
Confidence 21 0010 011 112368999999965 78888899999999887 999999999
Q ss_pred ccccC
Q psy6316 156 IDRLY 160 (259)
Q Consensus 156 ~D~~~ 160 (259)
+|...
T Consensus 150 ~D~lt 154 (270)
T 3sop_A 150 ADTMT 154 (270)
T ss_dssp GGGSC
T ss_pred cccCC
Confidence 99884
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.17 E-value=2.8e-11 Score=106.88 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=60.4
Q ss_pred CeEEEeCCCCcchH----HHHHhh--ccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE-EEEEecccccCcccccch
Q psy6316 95 GLLIIDTPGHESFS----NLRNRG--SSLCDIAILVVDIMHGLEPQTIESINILKSKKTPF-VVALNKIDRLYNWNTMNR 167 (259)
Q Consensus 95 ~~~liDtpG~~~~~----~~~~~~--~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi-ivv~NK~D~~~~~~~~~~ 167 (259)
+++||||||..... ...... +..+|.+++|+|++.+.. ....+..+.+. .|+ .+|+||+|.....
T Consensus 185 DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~~----- 256 (504)
T 2j37_W 185 EIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAKG----- 256 (504)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCCC-----
T ss_pred cEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccch-----
Confidence 59999999955321 111111 237899999999988654 33344444433 675 8899999986321
Q ss_pred hhHHHHHhhhh-------------ccccc-cccccccccCcc-eeEEeecCCCC
Q psy6316 168 RDVRDIIKSQE-------------SSVQT-HKTVESARKGQE-ICIKIEPIPGE 206 (259)
Q Consensus 168 ~~~~~~~~~~~-------------~~~~~-~~i~~Sa~~g~g-v~~~l~~i~~~ 206 (259)
.........+. ....+ +.+++|+..|.| +..+++.+...
T Consensus 257 g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11122111110 00012 334689999999 87766666543
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.04 E-value=2e-10 Score=98.23 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=47.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCC--cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAG--GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTP 102 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp 102 (259)
.+|+++|.+|+|||||+|+|++..+.....+ ++....+....+..... ....... |.......+.|||||
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~-~l~~~~~-------p~~~~~~~i~lvDtp 94 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFD-FLCQYHK-------PASKIPAFLNVVDIA 94 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHH-HHHHHHC-------CSEEECCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccce-eeccccC-------cccccccccEEEECC
Confidence 4499999999999999999998765221111 11111111111100000 0000000 000001129999999
Q ss_pred CCcchHH-------HHHhhccCCCeEEEEEeCCC
Q psy6316 103 GHESFSN-------LRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 103 G~~~~~~-------~~~~~~~~ad~~i~v~d~~~ 129 (259)
|+..... .+..+++.+|++++|+|+++
T Consensus 95 Gl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 95 GLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp C-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 9765443 45677899999999999975
No 211
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.03 E-value=3.9e-11 Score=102.03 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=64.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCC----------CCHH-HHHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG----------LEPQ-TIESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~----------~~~~-~~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+|||||++.+...|..+++.++++|||+|.++. .+.. ...++..+.. .+.|+|+++||+|+.
T Consensus 202 ~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 202 PFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp EEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred EEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 489999999999999999999999999999999872 1222 2334444443 368999999999986
Q ss_pred Ccc---------------cccchhhHHHHHh----hhhc---cccccccccccccCcceeEEe
Q psy6316 160 YNW---------------NTMNRRDVRDIIK----SQES---SVQTHKTVESARKGQEICIKI 200 (259)
Q Consensus 160 ~~~---------------~~~~~~~~~~~~~----~~~~---~~~~~~i~~Sa~~g~gv~~~l 200 (259)
... .....++....+. .+.. ..++.++++||++|.|+...+
T Consensus 282 ~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 282 EEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp HHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred hhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 311 0012223332221 1112 235677789999999997744
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.01 E-value=1.2e-09 Score=94.30 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=90.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCCC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGH 104 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 104 (259)
..++++|++|||||||+|.|.+..... .+.+......++ +. ..+.. .....+++++|+||.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t------~~--~~v~q---------~~~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT------ME--RHPYK---------HPNIPNVVFWDLPGI 130 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC----------CC--CEEEE---------CSSCTTEEEEECCCG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc------ee--EEecc---------ccccCCeeehHhhcc
Confidence 479999999999999999998853211 111110000000 00 00110 001124899999994
Q ss_pred cc----hHHHHH-hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC-c-----ccccchhhHHHH
Q psy6316 105 ES----FSNLRN-RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY-N-----WNTMNRRDVRDI 173 (259)
Q Consensus 105 ~~----~~~~~~-~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~-~-----~~~~~~~~~~~~ 173 (259)
.. ...... ..+...+..++ ++... ...+...+...+...+.|+++|+||.|+.- + -+.....++.+.
T Consensus 131 ~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 131 GSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp GGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHH
Confidence 21 222222 12344566555 77644 466777788888888999999999999762 1 112234455555
Q ss_pred Hhhhh-----cc-c-ccccccccc--ccCcceeEEeecC
Q psy6316 174 IKSQE-----SS-V-QTHKTVESA--RKGQEICIKIEPI 203 (259)
Q Consensus 174 ~~~~~-----~~-~-~~~~i~~Sa--~~g~gv~~~l~~i 203 (259)
+.++. .. . ...+|++|+ .++.|++.+...+
T Consensus 209 l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 209 IRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 55543 11 1 235678999 6677787755444
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.00 E-value=6.6e-10 Score=96.62 Aligned_cols=105 Identities=19% Similarity=0.101 Sum_probs=60.2
Q ss_pred CCeEEEeCCCCcchHHHHH----h--hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCC-C-EEEEEecccccCccccc
Q psy6316 94 PGLLIIDTPGHESFSNLRN----R--GSSLCDIAILVVDIMHGLEPQTIESINILKSKKT-P-FVVALNKIDRLYNWNTM 165 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~----~--~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~-p-iivv~NK~D~~~~~~~~ 165 (259)
.+++|+||||......... . .+..+|.+++|+|++.+. .....+..+.. .. | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D~~~~---- 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLDGSAK---- 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECSSSCST----
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCCCCccc----
Confidence 3599999999554322111 1 223689999999997653 22333333333 35 6 7899999998531
Q ss_pred chhhHHHHHhhhhcc-------------ccc-cccccccccCcc-eeEEeecCCCC
Q psy6316 166 NRRDVRDIIKSQESS-------------VQT-HKTVESARKGQE-ICIKIEPIPGE 206 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~-------------~~~-~~i~~Sa~~g~g-v~~~l~~i~~~ 206 (259)
.............. ..+ +..++|+..|.| +..+++.+...
T Consensus 254 -~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 254 -GGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp -THHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred -hHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 11222222221110 011 234689999999 88766666444
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.97 E-value=2.8e-10 Score=88.17 Aligned_cols=109 Identities=11% Similarity=-0.047 Sum_probs=67.3
Q ss_pred eEEEeCC------CCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHH----HHHHh----CCCCEEEEEecc-cccC
Q psy6316 96 LLIIDTP------GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI----NILKS----KKTPFVVALNKI-DRLY 160 (259)
Q Consensus 96 ~~liDtp------G~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l----~~~~~----~~~piivv~NK~-D~~~ 160 (259)
+-...+| ||..++..|..|+..+|++|||+|+++.......+-+ ..+.+ .+.|++|++||. |+..
T Consensus 98 ~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 98 MFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp -------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 4455565 6888999999999999999999999876332233322 22222 468999999995 6653
Q ss_pred cccccchhhHHHHHhhhhccccccccccccccCcceeEEeecCCCCC
Q psy6316 161 NWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i~~~~ 207 (259)
. ....++.+.+....-...|.+..+||++|+|+.+-++++....
T Consensus 178 A---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 178 R---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp B---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred C---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 2 3445566555443323578899999999999998777665443
No 215
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.97 E-value=8.9e-11 Score=99.49 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=51.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCC----------CCCCHHH-HHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIM----------HGLEPQT-IESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~----------~~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+|||+|++.+...|..+++.++++|+|+|.+ +..+..+ ..++..+.. .+.|+++++||+|+.
T Consensus 184 ~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 184 VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred eeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchh
Confidence 4999999999999999999999999999999987 2222222 334444443 468999999999985
No 216
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.93 E-value=3.3e-10 Score=97.24 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=52.3
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCC----------CCCHHH-HHHHHHHHh----CCCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH----------GLEPQT-IESINILKS----KKTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~~~~~-~~~l~~~~~----~~~piivv~NK~D~~ 159 (259)
.+.+|||+|++.+...|..+++.++++|+|+|.++ ..+..+ ..++..+.. .+.|+++++||+|+.
T Consensus 218 ~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp EEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred cceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence 48899999999999999999999999999999987 333322 335555543 358999999999985
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.89 E-value=3.8e-09 Score=91.53 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCeEEEeCCCCcchHHHHH------hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccch
Q psy6316 94 PGLLIIDTPGHESFSNLRN------RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNR 167 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~------~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~ 167 (259)
.+++|+||||......... .....+|.+++|+|++.+. ........+.+...+..+|+||+|.... .
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~-----g 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAK-----G 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSS-----H
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCccc-----c
Confidence 3599999999432211111 1234679999999998743 2344455555555566789999998632 1
Q ss_pred hhHHHHHhhhhccccccccccccccCcceeEE
Q psy6316 168 RDVRDIIKSQESSVQTHKTVESARKGQEICIK 199 (259)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~~ 199 (259)
........ ..+.++.+++. |++++.+
T Consensus 256 G~~ls~~~----~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 256 GGALSAVA----ATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHHHHH----TTCCCEEEEEC--SSSTTCE
T ss_pred cHHHHHHH----HHCCCEEEEEc--CCChHHh
Confidence 11222221 23456666664 8888553
No 218
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.85 E-value=1.1e-09 Score=91.03 Aligned_cols=100 Identities=18% Similarity=0.061 Sum_probs=70.2
Q ss_pred CcchHHHHHhhccCCCeEEEEEeCCCCC-CHHH-HHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhccc
Q psy6316 104 HESFSNLRNRGSSLCDIAILVVDIMHGL-EPQT-IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSV 181 (259)
Q Consensus 104 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~-~~~~-~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 181 (259)
++++..+...++..+|++++|+|++++. +... ..++..+...++|+++|+||+|+.... .. .............
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~---~v-~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE---EK-KELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH---HH-HHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc---cc-HHHHHHHHHHHHC
Confidence 6666666667899999999999998764 5554 346666777889999999999997321 00 1122233333344
Q ss_pred cccccccccccCcceeEEeecCCCCC
Q psy6316 182 QTHKTVESARKGQEICIKIEPIPGEA 207 (259)
Q Consensus 182 ~~~~i~~Sa~~g~gv~~~l~~i~~~~ 207 (259)
+.+++++||++|.|+++++..+....
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~G~i 167 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLEGFI 167 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTTTCE
T ss_pred CCeEEEEECCCCCCHHHHHhhccCcE
Confidence 67889999999999988766655443
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=6.9e-09 Score=88.87 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc-CCCCCC--cceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeC
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV-QDGEAG--GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDT 101 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt 101 (259)
.+|+++|++|||||||+|+|++..+ .....+ ++....+....+-.+......... .. ......+.+||+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~-~~-------~~v~~~i~lvD~ 92 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYK-PK-------SRVPAFLTVFDI 92 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHC-CS-------EEECEEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcc-cc-------cccCcceEEEec
Confidence 4699999999999999999998764 221111 111111211111000000000000 00 000002899999
Q ss_pred CCCc-------chHHHHHhhccCCCeEEEEEeCCC
Q psy6316 102 PGHE-------SFSNLRNRGSSLCDIAILVVDIMH 129 (259)
Q Consensus 102 pG~~-------~~~~~~~~~~~~ad~~i~v~d~~~ 129 (259)
||.. .+...+...++.+|++++|+|+.+
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9932 244456677889999999999864
No 220
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.73 E-value=4.6e-09 Score=85.28 Aligned_cols=99 Identities=12% Similarity=-0.070 Sum_probs=68.5
Q ss_pred CCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHH----HHH---H-hCCCCEEEEEec-ccccCcccccchhhHHH
Q psy6316 102 PGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI----NIL---K-SKKTPFVVALNK-IDRLYNWNTMNRRDVRD 172 (259)
Q Consensus 102 pG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l----~~~---~-~~~~piivv~NK-~D~~~~~~~~~~~~~~~ 172 (259)
.||..++..|..|++.+|++|||+|+++.......+-+ ..+ . ..+.|++|++|| .|+... ....++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHHHH
Confidence 46899999999999999999999999876432222211 222 1 257899999997 577633 24455555
Q ss_pred HHhhhhccccccccccccccCcceeEEeecC
Q psy6316 173 IIKSQESSVQTHKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 173 ~~~~~~~~~~~~~i~~Sa~~g~gv~~~l~~i 203 (259)
.+....-...|.+..+||.+|+|+.+-++.+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL 302 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWI 302 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHH
Confidence 5544332357888999999999998755443
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.68 E-value=3.1e-08 Score=85.83 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=53.8
Q ss_pred CCeEEEeCCCCcc------hHHHHHh--hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCccccc
Q psy6316 94 PGLLIIDTPGHES------FSNLRNR--GSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTM 165 (259)
Q Consensus 94 ~~~~liDtpG~~~------~~~~~~~--~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~ 165 (259)
.++.|+||||... +...... ..-..|.+++|+|++.+. ........+.+.-.+..+|+||+|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~a~---- 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGTAK---- 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGCSC----
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEeccccccc----
Confidence 3599999999533 1111111 122569999999998642 2334455555444567889999998631
Q ss_pred chhhHHHHHhhhhccccccccccccccCcceeE
Q psy6316 166 NRRDVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
.......... .+.++.+++. |++++.
T Consensus 254 -~G~als~~~~----~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 254 -GGGALSAVVA----TGATIKFIGT--GEKIDE 279 (433)
T ss_dssp -HHHHHHHHHH----HTCEEEEEEC--CSSSSC
T ss_pred -chHHHHHHHH----HCCCEEEEEC--CCChHh
Confidence 1222222222 2456666664 777754
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.62 E-value=4e-08 Score=88.21 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
...|+|+|.+|+|||||+|+|++...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 45699999999999999999998753
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.62 E-value=1.2e-07 Score=78.53 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=41.2
Q ss_pred CeEEEeCCCCcc--hHHHHH------hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHES--FSNLRN------RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~--~~~~~~------~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+||||... ...... ..+..+|.+++|+|++.+ ......+..+.. ..| ..+|+||+|..
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 599999999665 322111 234578999999998753 233444444444 466 67899999975
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=4e-08 Score=80.75 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=61.4
Q ss_pred EEeCCCCc-chHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhh
Q psy6316 98 IIDTPGHE-SFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176 (259)
Q Consensus 98 liDtpG~~-~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~ 176 (259)
+-..|||- .....+...+..+|++++|+|+.++.+.....+-..+ .++|.++|+||+|+.. ...... ..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~------~~~~~~-~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD------AAVTQQ-WKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC------HHHHHH-HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC------HHHHHH-HHH
Confidence 34578975 4556677788999999999999987665433332222 5799999999999973 222222 222
Q ss_pred hhccccccccccccccCcceeEEee
Q psy6316 177 QESSVQTHKTVESARKGQEICIKIE 201 (259)
Q Consensus 177 ~~~~~~~~~i~~Sa~~g~gv~~~l~ 201 (259)
+....+.+++++||++|.|+.+++.
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHH
Confidence 3333356788999999999977543
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.55 E-value=1.8e-08 Score=86.07 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=66.2
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHh
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~ 175 (259)
+.-++++ +++|.+.+..+.+.++++++|+|+++.......++...+ .++|+++|+||+|+.... ...+...+.+.
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~--~~~~~~~~~l~ 125 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRS--VKYPKLLRWMR 125 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTT--CCHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCc--cCHHHHHHHHH
Confidence 5555555 788999998888999999999999875432211222222 378999999999997421 12234445555
Q ss_pred hhhccccc---cccccccccCcceeEEeecC
Q psy6316 176 SQESSVQT---HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 176 ~~~~~~~~---~~i~~Sa~~g~gv~~~l~~i 203 (259)
......+. .++.+||++|.|+++++..+
T Consensus 126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I 156 (369)
T 3ec1_A 126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAI 156 (369)
T ss_dssp HHHHTTTCCCSEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHcCCCcccEEEEECCCCCCHHHHHHHH
Confidence 44444454 56789999999999876655
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.52 E-value=8.2e-08 Score=78.89 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=22.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..+|+++|.||+|||||+|+|.+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34699999999999999999998764
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.50 E-value=1.9e-07 Score=84.68 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=43.0
Q ss_pred CCeEEEeCCCCc-------------chHHHHHhhccC-CCeEEEEEeCCCCCC-HHHHHHHHHHHhCCCCEEEEEecccc
Q psy6316 94 PGLLIIDTPGHE-------------SFSNLRNRGSSL-CDIAILVVDIMHGLE-PQTIESINILKSKKTPFVVALNKIDR 158 (259)
Q Consensus 94 ~~~~liDtpG~~-------------~~~~~~~~~~~~-ad~~i~v~d~~~~~~-~~~~~~l~~~~~~~~piivv~NK~D~ 158 (259)
.++.++|.||.. ....+...++.. ..++++++++..... ......+..+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 359999999722 122334444443 456666666543322 23455667777778899999999999
Q ss_pred cCc
Q psy6316 159 LYN 161 (259)
Q Consensus 159 ~~~ 161 (259)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 854
No 228
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.43 E-value=3.5e-08 Score=84.18 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=65.8
Q ss_pred eEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh--CCCCEEEEEecccccCcccccchhhHHHH
Q psy6316 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDI 173 (259)
Q Consensus 96 ~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~ 173 (259)
+.-++++ .++|.+.+..+.+.+|++++|+|+++. ...+...+.+ .++|+++|+||+|+.... ...+...+.
T Consensus 49 ~~~v~~~-~e~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~--~~~~~~~~~ 121 (368)
T 3h2y_A 49 IQDVSLT-DDDFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKS--VKHDKVKHW 121 (368)
T ss_dssp --------CHHHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTT--SCHHHHHHH
T ss_pred cccCCCC-HHHHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcc--cCHHHHHHH
Confidence 3444443 577888888889999999999999763 2222222222 378999999999997421 122344444
Q ss_pred Hhhhhccccc---cccccccccCcceeEEeecC
Q psy6316 174 IKSQESSVQT---HKTVESARKGQEICIKIEPI 203 (259)
Q Consensus 174 ~~~~~~~~~~---~~i~~Sa~~g~gv~~~l~~i 203 (259)
+.......+. .++.+||++|.|+++++..+
T Consensus 122 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l 154 (368)
T 3h2y_A 122 MRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154 (368)
T ss_dssp HHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhh
Confidence 4444444455 67889999999999877655
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=2.1e-07 Score=75.64 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=22.1
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
+++++|.+|+|||||+|+|.+...
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred heEEeCCCCCCHHHHHHHHhcccc
Confidence 699999999999999999997765
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.23 E-value=2.2e-07 Score=75.46 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=58.4
Q ss_pred CCCCcc-hHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhc
Q psy6316 101 TPGHES-FSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQES 179 (259)
Q Consensus 101 tpG~~~-~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 179 (259)
-|||.. ........+..+|+++.|+|+.++........ ..+ ++|.++|+||+|+... ......+. ...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~------~~~~~~~~-~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADE------KTTKKWVE-FFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCH------HHHHHHHH-HHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCH------HHHHHHHH-HHH
Confidence 377543 33456678899999999999987655432221 112 8999999999999832 22222222 222
Q ss_pred cccccccccccccCcceeEEeecCCC
Q psy6316 180 SVQTHKTVESARKGQEICIKIEPIPG 205 (259)
Q Consensus 180 ~~~~~~i~~Sa~~g~gv~~~l~~i~~ 205 (259)
..+.++ .+||++|.|++.++..+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 234566 9999999999876665544
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.20 E-value=3.3e-06 Score=73.36 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=38.5
Q ss_pred CeEEEeCCCCcchHHHHH------hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRN------RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~------~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+||||......... ..+..+|.+++|+|+..+.. ....+..+.. ..+ .-+|+||+|..
T Consensus 185 D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~-~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 185 DVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNE-ALPLTGVVLTKVDGD 253 (433)
T ss_dssp SEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHH-HSCCCCEEEECTTSS
T ss_pred CEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhc-cCCCeEEEEecCCCC
Confidence 599999999544322111 12447899999999986532 2333333332 244 34689999975
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.09 E-value=2.3e-06 Score=70.84 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=57.0
Q ss_pred hhccCCCeEEEEEeCCCCCCHHH-H-HHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccccc
Q psy6316 113 RGSSLCDIAILVVDIMHGLEPQT-I-ESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESA 190 (259)
Q Consensus 113 ~~~~~ad~~i~v~d~~~~~~~~~-~-~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 190 (259)
..+..+|.+++|+|+..+....+ . +++......++|.++|+||+|+.... ...+..+.+.......+.+++.+||
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~---~~~~~~~~~~~~y~~~g~~v~~~sa 158 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ---DTEDTIQAYAEDYRNIGYDVYLTSS 158 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH---HHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh---hhHHHHHHHHHHHHhCCCeEEEEec
Confidence 46789999999999986543333 2 23444456789999999999997421 0001123333333344678889999
Q ss_pred ccCcceeEEeec
Q psy6316 191 RKGQEICIKIEP 202 (259)
Q Consensus 191 ~~g~gv~~~l~~ 202 (259)
.+|.|++.++..
T Consensus 159 ~~~~g~~~L~~~ 170 (307)
T 1t9h_A 159 KDQDSLADIIPH 170 (307)
T ss_dssp HHHTTCTTTGGG
T ss_pred CCCCCHHHHHhh
Confidence 999998764443
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=2.9e-06 Score=71.04 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=49.6
Q ss_pred CeEEEeCCCCcc----hHHHHHh--hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccCcccccchh
Q psy6316 95 GLLIIDTPGHES----FSNLRNR--GSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRR 168 (259)
Q Consensus 95 ~~~liDtpG~~~----~~~~~~~--~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~ 168 (259)
++.++||+|... +...+.. ..-..|-.++++|++.+. +....+..+.+......+++||.|.... .-
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~a~-----~G 285 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDADAR-----GG 285 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGCSC-----CH
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCccc-----hh
Confidence 488999999432 1111111 112478999999987652 3344445554332334677999997521 12
Q ss_pred hHHHHHhhhhccccccccccccccCcceeE
Q psy6316 169 DVRDIIKSQESSVQTHKTVESARKGQEICI 198 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~Sa~~g~gv~~ 198 (259)
....... ..+.++.+++ .|++++.
T Consensus 286 ~~l~~~~----~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 286 AALSISY----VIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp HHHHHHH----HHTCCEEEEE--CSSSTTC
T ss_pred HHHHHHH----HHCCCEEEEe--CCCCccc
Confidence 2222222 2245555555 6766644
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.04 E-value=1e-05 Score=67.59 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|.+|+||||++..|.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999654
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.01 E-value=6.3e-06 Score=72.24 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+|+|.+|+|||||++.|.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 346999999999999999999764
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.01 E-value=2e-05 Score=61.11 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=46.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC-----CCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK-----KTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~-----~~piivv~NK~D~~ 159 (259)
+++|+|||+.. .......+..+|.+++++.++... ......+..+... +.++.+|+|++|..
T Consensus 77 D~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 77 DFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 49999999865 345556777899999999987655 5555666666654 35778999999954
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.00 E-value=1.2e-05 Score=69.51 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=37.1
Q ss_pred CeEEEeCCCCcchHH-HHH-----hhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSN-LRN-----RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~-~~~-----~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+||||...... ... ...-.+|.+++|+|+..+ ......+..+... .+ .-+|+||+|..
T Consensus 182 DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~-l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 182 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEK-VGVTGLVLTKLDGD 250 (425)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHH-TCCCEEEEESGGGC
T ss_pred CEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhc-CCceEEEEeCcCCc
Confidence 599999999543221 111 112358999999998754 2223333333332 33 45789999975
No 238
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.92 E-value=2.3e-05 Score=68.14 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=24.0
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..+...|+|+|++++|||||+|.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456788999999999999999999875
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.90 E-value=1.8e-05 Score=65.63 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...|+++|++|+||||++..|.+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4469999999999999999997543
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.86 E-value=3.1e-05 Score=63.87 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...|+++|++|+||||++..|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997543
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.83 E-value=3.3e-05 Score=63.99 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|++||||||+++.|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999754
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.75 E-value=4.7e-05 Score=62.81 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCeEEEeCCCCcchHHH-HHh-----hccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 94 PGLLIIDTPGHESFSNL-RNR-----GSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~-~~~-----~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
.++.|+||||....... +.. ..-.+|.+++|+|+..+ ......+..+... .+ .-+|+||+|..
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~-~~i~givlnk~d~~ 250 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEK-VGVTGLVLTKLDGD 250 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHH-TCCCEEEEECGGGC
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhc-CCCCEEEEECCCCC
Confidence 35999999984322111 111 11258889999998743 2333333333322 33 45789999975
No 243
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.60 E-value=8.5e-05 Score=57.99 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=44.3
Q ss_pred CeEEEeCCCC-cchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC-CCCEEEEEeccccc
Q psy6316 95 GLLIIDTPGH-ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK-KTPFVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~-~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~-~~piivv~NK~D~~ 159 (259)
+++++|||+. .. ......+..+|.+|+++.++..........+..+... +.++.+|+|++|..
T Consensus 69 D~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 69 QNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp SEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred CEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 4999999986 43 2344567889999999997543222334455666653 67788999999965
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.57 E-value=0.00016 Score=61.04 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=52.6
Q ss_pred hccCCCeEEEEEeCCCCCCHHHH-HHHHHHHhCCCCEEEEEecccccCcccccchhhHHHHHhhhhcccccccccccccc
Q psy6316 114 GSSLCDIAILVVDIMHGLEPQTI-ESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARK 192 (259)
Q Consensus 114 ~~~~ad~~i~v~d~~~~~~~~~~-~~l~~~~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 192 (259)
.+..+|.+++|.......+.... +++......++|.++|+||+|+...+ ........+. .....+++++.+||.+
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~---~~~~~~~~~~-~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE---GMDFVNEQMD-IYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH---HHHHHHHHHH-HHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch---hHHHHHHHHH-HHHhCCCcEEEEecCC
Confidence 35789999987554333333322 23444456789999999999998421 1111222333 3344567889999999
Q ss_pred CcceeEEee
Q psy6316 193 GQEICIKIE 201 (259)
Q Consensus 193 g~gv~~~l~ 201 (259)
|.|++.+..
T Consensus 203 ~~gl~~L~~ 211 (358)
T 2rcn_A 203 QDGLKPLEE 211 (358)
T ss_dssp TBTHHHHHH
T ss_pred CcCHHHHHH
Confidence 999876433
No 245
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.49 E-value=0.00067 Score=54.73 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=42.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhC--CCCEEEEEecccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK--KTPFVVALNKIDR 158 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~--~~piivv~NK~D~ 158 (259)
+++|+|||+... ......+..+|.+|+++.++......-...+..+... +.++.+|+|+.+.
T Consensus 146 D~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 146 DYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp SEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 599999998543 3455666779999999998543222233455666655 4578899999943
No 246
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.42 E-value=6.9e-05 Score=65.90 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=57.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCccccccccccccCCCCCCCCCCCCCCCCeEEEeCCC
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPG 103 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG 103 (259)
+..|+++|.+|+||||+.++|........ +.. .... .+..+... .+... ...+||..|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~----~~t-~~~~---~d~~r~~~---~g~~~-----------~~~ifd~~g 96 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG----VPT-REFN---VGQYRRDM---VKTYK-----------SFEFFLPDN 96 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT----CCE-EEEE---HHHHHHHH---HCSCC-----------CGGGGCTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC----CCc-eEEe---cchhhhhh---ccCCC-----------cccccCCCC
Confidence 35799999999999999999965421100 000 0000 00000000 00000 156789888
Q ss_pred Ccc--hHHHH--------HhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEE
Q psy6316 104 HES--FSNLR--------NRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVAL 153 (259)
Q Consensus 104 ~~~--~~~~~--------~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~ 153 (259)
... ....+ ..++..+++.++|+|+++.....-..++..+++.+.+++++-
T Consensus 97 ~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 97 EEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 632 22222 345556788899999987633222334455555565655544
No 247
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.35 E-value=6.1e-05 Score=60.11 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCC-CEEEEEecccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT-PFVVALNKIDR 158 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~-piivv~NK~D~ 158 (259)
.+++|+|||+.... .....+..+|.+++|+.++.............+...+. .+.+++|+.+.
T Consensus 132 yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 35999999985432 33455688999999999754211222334444555554 46789999984
No 248
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.31 E-value=0.0006 Score=56.30 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHh----CCCCEE-EEEecccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS----KKTPFV-VALNKIDR 158 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~----~~~pii-vv~NK~D~ 158 (259)
.+++|+|||+..... .....+..+|.+|+|+.++..........+..+.. .+.+++ +|+|+++.
T Consensus 157 yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 359999999854321 12356688999999998754222223334555554 345544 89999984
No 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.26 E-value=8.2e-05 Score=61.54 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..++++|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 469999999999999999998754
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.00014 Score=56.11 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=23.7
Q ss_pred CcccccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 18 DENFMRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 18 ~~~~~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..+.|+...|+|+|++|||||||++.|.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 334566667999999999999999999865
No 251
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.24 E-value=0.00012 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
+++++|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999997653
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.21 E-value=0.00026 Score=54.12 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=26.6
Q ss_pred EEEEeeCCCChhHHHhHHhccccCCCCCCcceeeccccccCc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPA 68 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (259)
|+|+|++|||||||+++|+..... .+...+..||.++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~-----~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD-----SFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT-----TEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC-----CeEEEEEEeccCC
Confidence 899999999999999999765321 1344455555554
No 253
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.20 E-value=0.00041 Score=57.30 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHh
Q psy6316 25 AIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~ 45 (259)
..++++|++|+|||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 254
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00019 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999864
No 255
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.15 E-value=0.00038 Score=57.46 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..++++|++|+|||||+|.|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 469999999999999999998754
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.11 E-value=0.0002 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999999764
No 257
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.02 E-value=0.00025 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998653
No 258
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.99 E-value=0.00032 Score=54.13 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5999999999999999999875
No 259
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.98 E-value=0.00032 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998754
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.95 E-value=0.00042 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999775
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.91 E-value=0.00036 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998754
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.91 E-value=0.00041 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+|||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.89 E-value=0.0004 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 59999999999999999998754
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.89 E-value=0.00044 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999997653
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.87 E-value=0.00048 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|||||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 49999999999999999998764
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.87 E-value=0.00051 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.85 E-value=0.00049 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhcccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
..++++|++|||||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3699999999999999999987643
No 268
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.82 E-value=0.0005 Score=51.71 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.2
Q ss_pred EEEEEeeCCCChhHHHhHHh
Q psy6316 26 IVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~ 45 (259)
.++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999764
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.80 E-value=0.014 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..++++|++|+|||||++.|.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998753
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.76 E-value=0.00065 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
-.++++|++|||||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998764
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.76 E-value=0.00073 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|.+|+||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999654
No 272
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.75 E-value=0.0044 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred cccEEEEEeeCCCChhHHHhHHh
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~ 45 (259)
+...|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45679999999999999999765
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.75 E-value=0.00069 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.73 E-value=0.00068 Score=55.19 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 275
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.73 E-value=0.00068 Score=54.78 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.73 E-value=0.00065 Score=52.81 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=21.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..|+++|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 359999999999999999998653
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.72 E-value=0.00074 Score=52.05 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=21.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 359999999999999999997654
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.72 E-value=0.0007 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999997653
No 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.72 E-value=0.00067 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.72 E-value=0.0007 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999998753
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.71 E-value=0.00071 Score=54.51 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.71 E-value=0.0007 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|+.|+|||||++.|.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999876
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.71 E-value=0.00072 Score=54.14 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.70 E-value=0.00086 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+++|.+|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999865
No 285
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.70 E-value=0.00075 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 286
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.70 E-value=0.00075 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.70 E-value=0.00066 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+++|++|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999654
No 288
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.68 E-value=0.00078 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998753
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.00083 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 290
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.67 E-value=0.00094 Score=50.76 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.0
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
++..+|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34457999999999999999999654
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.67 E-value=0.00082 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|||||||++.|.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998763
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.00087 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.5
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
|++..|+++|.+|+||||+.+.|..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999864
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.67 E-value=0.00081 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 294
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.65 E-value=0.00085 Score=53.81 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 295
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.65 E-value=0.00086 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998764
No 296
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.64 E-value=0.00087 Score=51.04 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.62 E-value=0.00093 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|||||||++.|.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.62 E-value=0.0009 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 59999999999999999998764
No 299
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.61 E-value=0.001 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHh
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~ 45 (259)
+..|+++|++||||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999997
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.61 E-value=0.00091 Score=54.01 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..++++|++|+|||||++.|.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35999999999999999999764
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.61 E-value=0.00094 Score=54.48 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|||||||++.|.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998754
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.60 E-value=0.0008 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999998653
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.60 E-value=0.00096 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|++||||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999654
No 304
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.60 E-value=0.00095 Score=54.22 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.58 E-value=0.001 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.57 E-value=0.00097 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|+|++|+|||||++.|.+-.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 59999999999999999998654
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.57 E-value=0.0011 Score=49.46 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=18.6
Q ss_pred cEEEEEeeCCCChhHHHhHH
Q psy6316 25 AIVCVLGHVDTGKTKILDKL 44 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l 44 (259)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35999999999999999999
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.57 E-value=0.0011 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.++++|++|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 56999999999999999999764
No 309
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.56 E-value=0.001 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998753
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.56 E-value=0.00097 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999754
No 311
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.0012 Score=51.08 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456999999999999999999653
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.54 E-value=0.00083 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=15.6
Q ss_pred cEEEEEeeCCCChhHHHhHHh-cc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLR-RT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~-~~ 47 (259)
..|+++|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 359999999999999999998 64
No 313
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.53 E-value=0.005 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.4
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+..|+++|.+|+||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999964
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.49 E-value=0.0013 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+++|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999643
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.0013 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 316
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0013 Score=51.53 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=20.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999653
No 317
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.47 E-value=0.0061 Score=47.85 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccccC
Q psy6316 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLY 160 (259)
Q Consensus 119 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~~~ 160 (259)
+.-++++|--..+.....+.+..+...++++++++-..|-..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 455788897665555566677777777999999999888654
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.46 E-value=0.0015 Score=49.12 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4599999999999999999975
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.44 E-value=0.0014 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|++|+||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 320
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.00067 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.44 E-value=0.0013 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|||||||++.|.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 46999999999999999999764
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.44 E-value=0.0015 Score=50.30 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999999976
No 323
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.44 E-value=0.0015 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998653
No 324
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.41 E-value=0.0018 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..++++|++|+|||||++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997653
No 325
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.40 E-value=0.0016 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999998754
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0017 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999975
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.37 E-value=0.0017 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.|++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.36 E-value=0.0016 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.3
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
++...|+++|.+|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3455799999999999999999963
No 329
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.36 E-value=0.00097 Score=55.11 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5999999999999999999765
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.36 E-value=0.0014 Score=50.41 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=20.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999654
No 331
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.35 E-value=0.0017 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.+.++++|..|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4679999999999999999998763
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.34 E-value=0.0016 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|+.|+|||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999763
No 333
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.34 E-value=0.0017 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48999999999999999998754
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.32 E-value=0.0021 Score=48.82 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.30 E-value=0.002 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999964
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.28 E-value=0.0015 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=16.3
Q ss_pred cccEEEEEeeCCCChhHHHhHHhc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999964
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.28 E-value=0.0018 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
++..|+++|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998543
No 338
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.27 E-value=0.002 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
-.++++|++|||||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3599999999999999999873
No 339
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.27 E-value=0.0019 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998754
No 340
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.27 E-value=0.0018 Score=50.37 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEEeeCCCChhHHHhHHhc
Q psy6316 27 VCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~ 46 (259)
|+|+|.+|+||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999954
No 341
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.26 E-value=0.002 Score=49.53 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.5
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|.+||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.26 E-value=0.003 Score=48.81 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred cccEEEEEeeCCCChhHHHhHHhc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+...|+++|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345699999999999999999964
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.26 E-value=0.0018 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+|||||++.|++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999764
No 344
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.25 E-value=0.0018 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..++++|++|+|||||++.|.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 369999999999999999998753
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.25 E-value=0.0018 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.5
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...++++|++|+|||||++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999997653
No 346
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.25 E-value=0.002 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48999999999999999998754
No 347
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.24 E-value=0.015 Score=46.61 Aligned_cols=65 Identities=15% Similarity=0.032 Sum_probs=43.9
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEecccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDR 158 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~ 158 (259)
.+++|+|||+...........+..+|.+|+|+.++..........+..++..+.+++ +|+|+.|.
T Consensus 129 yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 129 LDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 469999999854322122222236899999998765433334556677777788887 89999885
No 348
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.24 E-value=0.0024 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999754
No 349
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.23 E-value=0.0023 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+|+|.+|+||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999653
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.23 E-value=0.0021 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999998753
No 351
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.22 E-value=0.0022 Score=54.26 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999998754
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.22 E-value=0.0025 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|.+|+||||+++.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999764
No 353
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.21 E-value=0.002 Score=50.13 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=18.7
Q ss_pred EEEEeeCCCChhHHHhHHhc
Q psy6316 27 VCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~ 46 (259)
|+|+|.+|+||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999964
No 354
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.21 E-value=0.0022 Score=49.14 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 499999999999999999965
No 355
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.0027 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=21.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
++...|+++|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34556999999999999999999654
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0027 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3457999999999999999999754
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.19 E-value=0.0028 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+++|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 358
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.18 E-value=0.0023 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999998764
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.18 E-value=0.0024 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+|||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 360
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.17 E-value=0.0024 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 48999999999999999998753
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.17 E-value=0.0026 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.|+++|.+|+|||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999754
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.15 E-value=0.0025 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
+.|+++|.+|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999954
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.14 E-value=0.0029 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+++|.+|+||||+++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.13 E-value=0.003 Score=51.68 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.5
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
.+++..|+++|++||||||+.+.|...
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999653
No 365
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.12 E-value=0.0019 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.+++|+|++|+|||||++.|.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997653
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.09 E-value=0.0033 Score=47.42 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.2
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
.+...+|+|+.|+|||||+.+|...
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999653
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.08 E-value=0.0033 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+++|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999964
No 368
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.08 E-value=0.0029 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999998753
No 369
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.07 E-value=0.0026 Score=54.08 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+||||+++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999764
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.07 E-value=0.003 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++..|+++|.+|+||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34557999999999999999999654
No 371
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0028 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...++++|++||||||+++.|.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999765
No 372
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.05 E-value=0.0027 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
+++|+|++|||||||++.|++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999997653
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.02 E-value=0.0035 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.6
Q ss_pred cEEEEEeeCCCChhHHHhHHh
Q psy6316 25 AIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~ 45 (259)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.02 E-value=0.0032 Score=51.63 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+|+|.+|+|||||++.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999988543
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.00 E-value=0.002 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58999999999999999998754
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.99 E-value=0.0044 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.98 E-value=0.003 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999964
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.97 E-value=0.004 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
++..|+++|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999964
No 379
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.97 E-value=0.0034 Score=48.79 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.1
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999964
No 380
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.96 E-value=0.0031 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
+|+++|.+|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999954
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.95 E-value=0.0038 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|.+|+||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999653
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.95 E-value=0.004 Score=48.85 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+|+|.+|+||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999964
No 383
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.94 E-value=0.0032 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhccc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
..|+|+|++|+|||||++.|++..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 459999999999999999998653
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.92 E-value=0.004 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999964
No 385
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.90 E-value=0.0047 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.8
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 386
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.90 E-value=0.0032 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.1
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+|.|..||||||+++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999765
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.88 E-value=0.0044 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.87 E-value=0.004 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+|+|.+|+||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999643
No 389
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.86 E-value=0.0034 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999764
No 390
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.86 E-value=0.019 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..+++.|++|+|||++++.+...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999877543
No 391
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.85 E-value=0.0039 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|+++|+|||||+|....|...
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999644
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.85 E-value=0.0035 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
+.|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999854
No 393
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.84 E-value=0.0045 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+..|+++|.+|+||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999964
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.84 E-value=0.0019 Score=54.41 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|||||||++.|.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998753
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.83 E-value=0.0024 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999643
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.81 E-value=0.0046 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.80 E-value=0.0046 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
++..|++.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999963
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.80 E-value=0.005 Score=48.15 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=19.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
++.|+++|+|||||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 445778999999999999998643
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.79 E-value=0.0045 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.0
Q ss_pred cccEEEEEeeCCCChhHHHhHHhc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+...|+|+|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999854
No 400
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.78 E-value=0.0041 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999764
No 401
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.74 E-value=0.0047 Score=49.47 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+|+|++|+|||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999643
No 402
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.72 E-value=0.005 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
.+|+++|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.72 E-value=0.004 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+++|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 404
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.72 E-value=0.043 Score=45.53 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999543
No 405
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0043 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|+|+.|+|||||++.|++-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 49999999999999999997653
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.71 E-value=0.0047 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHhccc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~~ 48 (259)
...|+++|++||||||+++.|.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4469999999999999999997653
No 407
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.70 E-value=0.0051 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.2
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999965
No 408
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.70 E-value=0.0045 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999964
No 409
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.0054 Score=50.61 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=21.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
|+.+.|+|+|++|+|||||...|...
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence 45567999999999999999999654
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.69 E-value=0.0047 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999653
No 411
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.68 E-value=0.0063 Score=44.54 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.1
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+.+...+|+|+.|+||||++.+|..
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3355789999999999999999853
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.68 E-value=0.0056 Score=47.02 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 413
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.67 E-value=0.0055 Score=49.26 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 414
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.67 E-value=0.0055 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999654
No 415
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.64 E-value=0.0053 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 416
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.64 E-value=0.0044 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999765
No 417
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.63 E-value=0.0053 Score=54.78 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|||||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998754
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.61 E-value=0.0058 Score=51.38 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=21.0
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998764
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.0056 Score=54.59 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999998753
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.57 E-value=0.0073 Score=47.02 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+|+|.+|+||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999954
No 421
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.57 E-value=0.0056 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.4
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997654
No 422
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.55 E-value=0.0057 Score=53.61 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
-.++++|++|||||||++.|.+-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35999999999999999999764
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.53 E-value=0.0058 Score=47.86 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=19.1
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999964
No 424
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.53 E-value=0.007 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHh
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~ 45 (259)
...|+|+|.+||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999996
No 425
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.49 E-value=0.006 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999764
No 426
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.0066 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 59999999999999999998754
No 427
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.45 E-value=0.0069 Score=54.60 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 59999999999999999997653
No 428
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.43 E-value=0.026 Score=45.63 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=45.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~ 159 (259)
+++|+|||+..... ........+|.+|+|+.+.......-...+..+...+.+++ +|+|++|..
T Consensus 193 D~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 49999999854321 22234467899999999866544444556677777788876 899999964
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.42 E-value=0.0073 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|++|+||||+++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999654
No 430
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.41 E-value=0.008 Score=46.55 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|.+|+||||+.+.|...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998643
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.39 E-value=0.0069 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.3
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
|++..|+++|.+|+||||+.+.|..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999998854
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.38 E-value=0.0079 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...|+++|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999654
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.36 E-value=0.0083 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.0
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
.+.++|+|++|||||||+++++.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999863
No 434
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.36 E-value=0.065 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.+++.|++|+||||+++.+...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 435
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.34 E-value=0.0082 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999754
No 436
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.34 E-value=0.007 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 59999999999999999997653
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.32 E-value=0.0091 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|.+|+||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999643
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.32 E-value=0.0076 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.|..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999998754
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.28 E-value=0.0077 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 440
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.26 E-value=0.0078 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 59999999999999999997653
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.23 E-value=0.0091 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.8
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 49999999999999999998764
No 442
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.22 E-value=0.0091 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.++++|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 443
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.20 E-value=0.0094 Score=46.91 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||+..+++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999999874
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.20 E-value=0.0089 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 445
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.18 E-value=0.048 Score=44.42 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=45.7
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCE-EEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPF-VVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pi-ivv~NK~D~~ 159 (259)
+++|+|||+..... ........+|.+|+|+.+.......-...+..+...+.++ -+|+|++|..
T Consensus 203 D~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 49999999854332 2334567899999999986644444455677777777664 4889999964
No 446
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.18 E-value=0.0071 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999654
No 447
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.18 E-value=0.0069 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|++|+|||||++.|.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 59999999999999999997653
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.17 E-value=0.0071 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=17.4
Q ss_pred ccEEEEEeeCCCChhHHHhHHhc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~ 46 (259)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999864
No 449
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.17 E-value=0.01 Score=46.44 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...+++.|++|+||||++..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999654
No 450
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.09 E-value=0.065 Score=43.93 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=46.5
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEE-EEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFV-VALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~pii-vv~NK~D~~ 159 (259)
+++|+|||+..... ........+|.+|+|+.............+..+...+.+++ +|+|++|..
T Consensus 215 D~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 49999999954322 22234578999999999876655556667777777777655 789999964
No 451
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.08 E-value=0.012 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|.|.+||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999999754
No 452
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.08 E-value=0.01 Score=50.47 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.++++|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999999975
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.07 E-value=0.012 Score=46.46 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=20.7
Q ss_pred cccEEEEEeeCCCChhHHHhHHhc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+...|+++|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999999864
No 454
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.05 E-value=0.011 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 455
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.02 E-value=0.034 Score=42.13 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=27.3
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHhCCCCEEEEEecccc
Q psy6316 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDR 158 (259)
Q Consensus 119 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~piivv~NK~D~ 158 (259)
+.-++++|--........+.+..+...++++++.+...|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4568888865555444555666565668998888887773
No 456
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.01 E-value=0.0087 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.2
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||++.|.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999765
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.01 E-value=0.011 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++++|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 458
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.97 E-value=0.012 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999975
No 459
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.92 E-value=0.084 Score=43.34 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.7
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999954
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.91 E-value=0.011 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.4
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+...|+|.|.+|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999654
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.87 E-value=0.015 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=20.8
Q ss_pred ccccEEEEEeeCCCChhHHHhHHh
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~ 45 (259)
+.+...+|+|+.|+||||++.+|.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHH
Confidence 445678999999999999999985
No 462
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.013 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEeeCCCChhHHHhHHhccc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~~ 48 (259)
++++|+.|+|||||++.|.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998764
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.76 E-value=0.017 Score=45.60 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+..|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999654
No 464
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.76 E-value=0.015 Score=47.07 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=19.9
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..++++|++|+|||||+..+++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 465
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.75 E-value=0.016 Score=45.14 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=21.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
|+...|+|.|.+|+||||+++.|...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 66677999999999999999999643
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.75 E-value=0.016 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
.-|+|+|++|+|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34999999999999999999754
No 467
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.70 E-value=0.015 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.3
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
-|| ++++|.+||||||+...|...
T Consensus 8 ~~~---~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMR---LILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CE---EEEECCTTSCHHHHHHHHHHH
T ss_pred ccc---eeeECCCCCCHHHHHHHHHHH
Confidence 366 999999999999999999643
No 468
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.69 E-value=0.016 Score=41.93 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=19.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~ 46 (259)
..|.+.|++|+|||+++..+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3499999999999999999853
No 469
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.68 E-value=0.013 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+++++.|++|+||||+++.+.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999774
No 470
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.63 E-value=0.019 Score=45.49 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.1
Q ss_pred cccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 21 FMRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 21 ~~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
.|+...|+|.|.+|+||||+++.|...
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 466677999999999999999999644
No 471
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.62 E-value=0.015 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...+++.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999653
No 472
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.62 E-value=0.24 Score=41.42 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.+++.|++|+||||++..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999654
No 473
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.62 E-value=0.016 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.7
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+..|++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999653
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.58 E-value=0.017 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=21.2
Q ss_pred ccccEEEEEeeCCCChhHHHhHHh
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~ 45 (259)
+.+...+|+|+.|+|||||+.+|.
T Consensus 22 ~~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 22 FSDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CCSSEEEEECCTTTCSTHHHHHHH
T ss_pred cCCCcEEEECCCCCcHHHHHHHHH
Confidence 445579999999999999999996
No 475
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.56 E-value=0.016 Score=41.95 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.0
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|.+.|++|+|||++...+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34999999999999999999643
No 476
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.54 E-value=0.014 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEEeeCCCChhHHHhHHhc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~ 46 (259)
.+++.|+||+||||++.+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888864
No 477
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.53 E-value=0.017 Score=46.74 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...+++.|++|+|||++++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345999999999999999999654
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.53 E-value=0.013 Score=57.83 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
+|+++|++|+|||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5999999999999999999654
No 479
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.51 E-value=0.0067 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred ccEEEEEeeCCCChhHHHhHHh
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLR 45 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~ 45 (259)
+..++++|++|+|||||+++|.
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998884
No 480
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.51 E-value=0.018 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.+++.|++|+||||++..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 481
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.016 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.1
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.+++.|++|+|||+++..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999643
No 482
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.50 E-value=0.0023 Score=50.51 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|+|++|||||||+++|.+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999997654
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.48 E-value=0.021 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.|+|+|++|+|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 484
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.44 E-value=0.019 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|++.|++|+|||+|++++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35999999999999999999754
No 485
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.44 E-value=0.018 Score=48.56 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEeeCCCChhHHHhHHhccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTN 48 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~ 48 (259)
.++|.|++|+||||+++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999997553
No 486
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.44 E-value=0.043 Score=43.58 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=42.8
Q ss_pred CCeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCC---------CCEEEEEeccccc
Q psy6316 94 PGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK---------TPFVVALNKIDRL 159 (259)
Q Consensus 94 ~~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~---------~piivv~NK~D~~ 159 (259)
.+++|+|||+... ......+..+|.+|+|++++..........+..+...+ ..+.+|+|+.|..
T Consensus 114 yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 114 FEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 4599999998543 35566778999999999975422222233445554433 4567899999854
No 487
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.41 E-value=0.065 Score=41.88 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+|||+... ......+..+|.+++|+.++..........+..+...+.+ .-+|+|+.+..
T Consensus 113 D~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 113 DFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp SEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 599999998543 4455677899999999987542222234455666665654 45889999964
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.41 E-value=0.021 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..+++.|+||+|||+|+.++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35778899999999999999643
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.37 E-value=0.013 Score=52.43 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.6
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+++|.+|||||||++.|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 46999999999999999999765
No 490
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.37 E-value=0.017 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.4
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+++++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999765
No 491
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.36 E-value=0.044 Score=43.68 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=42.2
Q ss_pred CeEEEeCCCCcchHHHHHhhccCCCeEEEEEeCCCCCCHHHHHHHHHHHhCCCC-EEEEEeccccc
Q psy6316 95 GLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTP-FVVALNKIDRL 159 (259)
Q Consensus 95 ~~~liDtpG~~~~~~~~~~~~~~ad~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-iivv~NK~D~~ 159 (259)
+++|+|||+... ......+..+|.+|+|+.++..........+..+...+.+ +-+|+|++|..
T Consensus 112 D~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 112 DILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp SEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred CEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 599999998543 4455667889999999987542222233455555555544 45899999964
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.34 E-value=0.021 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999654
No 493
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.31 E-value=0.023 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=20.9
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRR 46 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~ 46 (259)
+.+...+|+|+.|+||||++.+++.
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456689999999999999999853
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.27 E-value=0.026 Score=43.90 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.3
Q ss_pred ccccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 22 MRAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 22 ~r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
|+...|+|.|.+|+||||.++.|...
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456999999999999999999644
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.23 E-value=0.022 Score=54.12 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.1
Q ss_pred EEEEEeeCCCChhHHHhHHhcccc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRTNV 49 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~~~ 49 (259)
.++++|+.|+|||||++.|.+..+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999986543
No 496
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.20 E-value=0.023 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.3
Q ss_pred cEEEEEeeCCCChhHHHhHHhcc
Q psy6316 25 AIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 25 ~~I~v~G~~~~GKStlin~l~~~ 47 (259)
..|+|+|++|+|||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46999999999999999999653
No 497
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.17 E-value=0.026 Score=42.28 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEeeCCCChhHHHhHHhcc
Q psy6316 27 VCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 27 I~v~G~~~~GKStlin~l~~~ 47 (259)
|++.|++|+||||+.-.|...
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 999999999999999999754
No 498
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.027 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=18.8
Q ss_pred EEEEEeeCCCChhHHHhHHhcc
Q psy6316 26 IVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 26 ~I~v~G~~~~GKStlin~l~~~ 47 (259)
.++++|++|+|||||+..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998777543
No 499
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.14 E-value=0.03 Score=49.42 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.8
Q ss_pred cccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 23 RAAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 23 r~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
+.++++|+|.+|+|||++++.|+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998653
No 500
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.023 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred ccEEEEEeeCCCChhHHHhHHhcc
Q psy6316 24 AAIVCVLGHVDTGKTKILDKLRRT 47 (259)
Q Consensus 24 ~~~I~v~G~~~~GKStlin~l~~~ 47 (259)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999754
Done!