RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6316
(259 letters)
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 274 bits (704), Expect = 3e-89
Identities = 77/162 (47%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGP 81
+R+ IV VLGHVD GKT +LD +R + V EAGGITQ IGAT +P D I
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLK- 61
Query: 82 GGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINI 141
+PGL IDTPGHE+F+ LR RG +L D+AIL+VDI G +PQT E++NI
Sbjct: 62 ----KFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117
Query: 142 LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQT 183
L+ +TPFVVA NKIDR++ W R + Q+ VQ
Sbjct: 118 LRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ 159
Score = 87.7 bits (218), Expect = 6e-20
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 184 HKTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQK 243
+ ++SA +GQ++ + I+ ++G+ E D L I K+ DL
Sbjct: 515 GENLKSASRGQKVAMAIKDA------VYGKTIHEGDTLYVDIPENHYHILKEQLSGDLTD 568
Query: 244 TDWQLMVDLKKVFQ 257
+ LM + ++ +
Sbjct: 569 EELDLMDKIAEIKR 582
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 141 bits (358), Expect = 2e-42
Identities = 54/136 (39%), Positives = 77/136 (56%), Gaps = 23/136 (16%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82
R +V ++GHVD GKT +LD +R + V + EAGGITQ IGA V
Sbjct: 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY------------QVTVND 54
Query: 83 GEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
++ +DTPGHE+F+ +R RG+ + DI ILVV G+ PQT+E+IN
Sbjct: 55 KKI-----------TFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHA 103
Query: 143 KSKKTPFVVALNKIDR 158
K+ P +VA+NK+D+
Sbjct: 104 KAANVPIIVAINKMDK 119
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 144 bits (365), Expect = 4e-40
Identities = 57/140 (40%), Positives = 75/140 (53%), Gaps = 30/140 (21%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82
R+ +V ++GHVD GKT +LDKLR+T V EAGGITQ IGA V + + T
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKIT------- 55
Query: 83 GEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVV----DIMHGLEPQTIES 138
+DTPGH +FS +R RG+ + DI ILVV +M QT+ES
Sbjct: 56 ---------------FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM----KQTVES 96
Query: 139 INILKSKKTPFVVALNKIDR 158
I K P V+A+NK D+
Sbjct: 97 IQHAKDAHVPIVLAINKCDK 116
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 141 bits (358), Expect = 3e-39
Identities = 58/140 (41%), Positives = 78/140 (55%), Gaps = 31/140 (22%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82
RA +V ++GHVD GKT +L+ +R T V GEAGGITQ IGA HV
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY------------HVETEN 50
Query: 83 GEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVV----DIMHGLEPQTIES 138
G + +DTPGH +F+++R RG+ DI +LVV +M PQTIE+
Sbjct: 51 GMI-----------TFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM----PQTIEA 95
Query: 139 INILKSKKTPFVVALNKIDR 158
I K+ + P VVA+NKID+
Sbjct: 96 IQHAKAAQVPVVVAVNKIDK 115
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 73.1 bits (179), Expect = 6e-15
Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 32/238 (13%)
Query: 27 VCVLGHVDTGKTKILDKL---------------RRT-NVQDGEAGGITQQIGATNVPADA 70
+ V+ HVD GK+ + D L R T +D + GIT I +T +
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGIT--IKSTAI---- 75
Query: 71 IRENTKHVRGPGGEVGGPGPLEIPGLLI--IDTPGHESFSNLRNRGSSLCDIAILVVDIM 128
+ + LI ID+PGH FS+ + D A++VVD +
Sbjct: 76 ---SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132
Query: 129 HGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVE 188
G+ QT + ++ VV +NK+DR +++ D+ SV +
Sbjct: 133 EGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTY 192
Query: 189 SARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDW 246
+ ++ + P FG F + + + + + + W
Sbjct: 193 ADEVLGDVQV----YPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVD-KAKMMDRLW 245
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 59.0 bits (143), Expect = 3e-10
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 46/162 (28%)
Query: 15 NPEDENFMRA--------AIVCVLGHVDTGKT---KILDKLRRTNVQDG----EAGGITQ 59
+ + + + + GH+D GKT K+L ++ T+ D + GIT
Sbjct: 2 HHHHHHSIEGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGIT- 60
Query: 60 QIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPG--LLIIDTPGHESFSNLRN--RGS 115
I + ++ + ++D PGH +R +
Sbjct: 61 -----------I--DIGFS-----------AFKLENYRITLVDAPGHADL--IRAVVSAA 94
Query: 116 SLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
+ D+A++VVD G + QT E + IL P +V + K D
Sbjct: 95 DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSD 136
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 56.6 bits (137), Expect = 2e-09
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
++DTPGH F+ R + D A++V+D G+EP+TI+ + + + + TP + +NK+D
Sbjct: 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145
Query: 158 R 158
R
Sbjct: 146 R 146
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 56.2 bits (136), Expect = 2e-09
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
++DTPGHE FS R + D ++V+D G+E +T + + + + + TP + +NK+D
Sbjct: 86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLD 145
Query: 158 R 158
R
Sbjct: 146 R 146
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 53.9 bits (130), Expect = 1e-08
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 89 GPLEIPGL---LIIDTPG-HES--FSNLRNRGSSL----CDIAILVVDIMHGLEPQTIES 138
+E+ + ++DTPG + LR + D ILV D +
Sbjct: 75 KSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV-- 132
Query: 139 INILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVE-SARKGQEI 196
+N+ K + PFVV +NKID L + + +K S K + SA + +
Sbjct: 133 VNLFKEMEIPFVVVVNKIDVL--------GEKAEELKGLYESRYEAKVLLVSALQKKGF 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-08
Identities = 48/321 (14%), Positives = 90/321 (28%), Gaps = 95/321 (29%)
Query: 4 VFNK----RREKIEENPEDENFMRAAI--------VCVLGHVDTGKTK-ILDKLRRTNVQ 50
VF K R + + +R A+ V + G + +GKT LD VQ
Sbjct: 125 VFAKYNVSRLQPYLK-------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 51 DGEAGGI---TQQIGATNVPADAIR--ENTKHVRGPGGEVGGPGPLEIP----------- 94
I + N P + + + P I
Sbjct: 178 CKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 95 ----------GLLIID---TPGH-ESFSNLR------NRGSSLCDIA-------ILVVDI 127
LL++ +F NL R + D I +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 128 MHGLEPQTIESI--NILKSKKT----------PFVVAL------NKIDRLYNWNTMNRRD 169
L P ++S+ L + P +++ + + NW +N
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 170 VRDIIKSQESSVQTHKTVESARKGQEICI--KIEPIPGEAPKMFGRHFDEND--FLVSKI 225
+ II ESS+ + E + + + IP + ++D +V+K+
Sbjct: 355 LTTII---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 226 SRQSI---DACKDYFR-DDLQ 242
+ S+ + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIY 432
Score = 47.2 bits (111), Expect = 3e-06
Identities = 45/289 (15%), Positives = 89/289 (30%), Gaps = 75/289 (25%)
Query: 5 FNKRREKIEENPE---DENFMRAAIVCVLGHVDTGKTKILDKLRRTN--VQDGEAGGITQ 59
+ ++R+++ + + N R L + L +LR + DG G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNVLIDGVLG---- 160
Query: 60 QIGATNVPADAIRENTKHVRGPG-------GEVGGPGPLEIPGLLIIDTPGHESFSNLRN 112
G T V D + P + L ++ ++ N +
Sbjct: 161 -SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQKLLYQIDPNWTS 215
Query: 113 RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDV-- 170
R +I + + I L +LKSK P+ L + + N N ++
Sbjct: 216 RSDHSSNIKLRIHSIQAELR-------RLLKSK--PYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 171 ------RD--IIKSQESSVQTHKTVESARKG------QEIC-----IKIEPIPGEAPKMF 211
R + ++ TH +++ + + + + +P E
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT- 325
Query: 212 GRHFDENDFLVSKISRQSIDACKDYFRDDLQKTD-WQLMVDLKKVFQIL 259
N +S I+ RD L D W+ V+ K+ I+
Sbjct: 326 ------NPRRLSIIAES--------IRDGLATWDNWK-HVNCDKLTTII 359
Score = 34.4 bits (78), Expect = 0.036
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 36/145 (24%)
Query: 126 DIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHK 185
DI+ E +++ + K D + +++ ++ II S+++ T +
Sbjct: 20 DILSVFEDAFVDNFDC---KDVQ--------DMPKS--ILSKEEIDHIIMSKDAVSGTLR 66
Query: 186 TVESARKGQEICIKIEPIPGEAPKMF-GRHFDEN-DFLVSKISRQSIDACKDY-----FR 238
+ QE E + F N FL+S I + R
Sbjct: 67 LFWTLLSKQE----------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 239 DDLQKTDWQLMVDL-----KKVFQI 258
D L D Q+ + ++
Sbjct: 117 DRLY-NDNQVFAKYNVSRLQPYLKL 140
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 48.8 bits (117), Expect = 5e-07
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 25/74 (33%)
Query: 97 LIIDTPGHESFSNLRN--RGSSLCDIAILVVDIMHGLEPQT-----------IESINILK 143
+I DTPGHE + RN G+S CD+AI++VD +G++ QT I+ I
Sbjct: 107 IIADTPGHEQY--TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHI---- 160
Query: 144 SKKTPFVVALNKID 157
VVA+NK+D
Sbjct: 161 ------VVAINKMD 168
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 46.7 bits (111), Expect = 1e-06
Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 38/202 (18%)
Query: 3 AVFNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQI- 61
+ N +I IV G +GKT L + + + ++
Sbjct: 4 STINFANREIN----------FKIV-YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATE 52
Query: 62 GATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIA 121
+ D + + V+G + PG ++ R D
Sbjct: 53 DERTLFFDFLPLDIGEVKGFKTR-----------FHLYTVPGQVFYNASRKLILRGVDGI 101
Query: 122 ILVVDIMHGLEPQTIESINILKS---------KKTPFVVALNKIDRLYNWNTMNRRDVRD 172
+ V D ES+ ++ P V+ +NK D + + VR
Sbjct: 102 VFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP---DALPVEMVRA 158
Query: 173 IIKSQESSVQTHKTVESARKGQ 194
++ E + A +G+
Sbjct: 159 VVD-PEGKFPVLEA--VATEGK 177
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 47.0 bits (111), Expect = 2e-06
Identities = 31/179 (17%), Positives = 54/179 (30%), Gaps = 39/179 (21%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADA---------IR 72
M + IV +G +GKT + + R + + + G +P + +
Sbjct: 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVE 71
Query: 73 ENTKHVRGPGGEV----------------GGPGPLEIPGLLIIDTPG-------HESFSN 109
E + GP G + + ++IDTPG HE
Sbjct: 72 EIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVR 131
Query: 110 LRNRGSSLCDIAILVVDIMHGLEPQ-----TIESINILKSKKTPFVVALNKIDRLYNWN 163
L + + D +P ++ I + ALNK+D L
Sbjct: 132 LMENLPYPL--VVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 188
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 46.0 bits (110), Expect = 4e-06
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 38/142 (26%)
Query: 31 GHVDTGKTKILDKLRRT--NVQDGEAGGITQQIGATNVPADAIRE-----NTKHVRGPGG 83
H + + R G G T++ A + + +
Sbjct: 5 HHHHHHSSG---LVPRGSHMANVAIIGTEKS--GRTSLAA-NLGKKGTSSDITMY----- 53
Query: 84 EVGGPGPLEIPG--LLIIDTPGHESFSNLRN--RGSSLCDIAILVVD---IMHGLEPQTI 136
+ G ++ +D + L++ ++ DIA+L + + T
Sbjct: 54 ------NNDKEGRNMVFVDAHSYPKT--LKSLITALNISDIAVLCIPPQGLD----AHTG 101
Query: 137 ESINILKSKKTP-FVVALNKID 157
E I L ++AL + D
Sbjct: 102 ECIIALDLLGFKHGIIALTRSD 123
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 43.8 bits (104), Expect = 3e-05
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 19/139 (13%)
Query: 31 GHVDTGKTKILDKLRRTNVQDGEAG-----GITQQIGATNVPADAIRENTKHVRGPGGEV 85
GHVD GKT + L T V GIT +IG ADA +
Sbjct: 17 GHVDHGKTTLTKAL--TGVWTDTHSEELRRGITIKIGF----ADAEIRRCPNCGRYSTSP 70
Query: 86 GGPGPLEIPGLL----IIDTPGHESF-SNLRNRGSSLCDIAILVVDIMHGL-EPQTIESI 139
P + ID PGHE+ + + G+SL D AILV+ PQT E +
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLA-GASLMDGAILVIAANEPCPRPQTREHL 129
Query: 140 NILKSKKTP-FVVALNKID 157
L+ ++A NKI+
Sbjct: 130 MALQIIGQKNIIIAQNKIE 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 43.8 bits (104), Expect = 3e-05
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 31 GHVDTGKTKILDKLRRTNVQDGEAG-----GITQQIGATNVPADAIRENTKHVRGPGGEV 85
GHVD GKT + L T V GI+ ++G AD +
Sbjct: 15 GHVDHGKTSLTKAL--TGVWTDRHSEELRRGISIRLGY----ADCEIRKCPQCGTYTTKP 68
Query: 86 GGPGPLEIPGLL----IIDTPGHESF-SNLRNRGSSLCDIAILVVDIMHGL-EPQTIESI 139
P L L +D+PGHE+ + + + G+SL D AILV+ +PQT E +
Sbjct: 69 RCPNCLAETEFLRRVSFVDSPGHETLMATMLS-GASLMDGAILVIAANEPCPQPQTKEHL 127
Query: 140 NILKSKKTP-FVVALNKID 157
L+ ++ NKID
Sbjct: 128 MALEILGIDKIIIVQNKID 146
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 39.4 bits (93), Expect = 8e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 136
IDTPGH FS +R + C+ A+LVVD G+E QT+
Sbjct: 75 FIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL 113
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 39.4 bits (93), Expect = 9e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 136
+IDTPGH FS +R + C+ A+L++D G+E QT+
Sbjct: 77 LIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV 115
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 38.2 bits (90), Expect = 0.002
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 99 IDTPG-HESFSNLRNR------GSSL--CDIAILVVDIMH-GLEPQTIESINILKSKKTP 148
+DTPG H NR SS+ ++ I VV+ + + + +N L+ K P
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMV--LNKLREGKAP 118
Query: 149 FVVALNKIDRL 159
++A+NK+D +
Sbjct: 119 VILAVNKVDNV 129
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 38.4 bits (88), Expect = 0.002
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 11/181 (6%)
Query: 25 AIVCVLGHVDTGKTKIL---DKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGP 81
A++ VL + K I K + T ++ V
Sbjct: 104 AVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYA 163
Query: 82 GGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSL---CDIAILVVDIMHGLEPQTIES 138
V P L G+ I+D+PG C + V+
Sbjct: 164 --VVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY 221
Query: 139 I-NILKSKKTPFVVALNKIDRLYNWNT--MNRRDVRDIIKSQESSVQTHKTVESARKGQE 195
+ N +K + +N D++ + +++ + +GQ
Sbjct: 222 LENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN 281
Query: 196 I 196
I
Sbjct: 282 I 282
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 37.8 bits (87), Expect = 0.002
Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 26/178 (14%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V V G +GK+ ++ LR ++ A + G V + KH P
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGA----AKTGVVEVTMERHP--YKHPNIPNVVF- 124
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK 146
++PG I + + L D ++ + I+ + K
Sbjct: 125 ----WDLPG---IGSTNFPPDTYLEKMKFYEYDF--FIIISATRFKKNDIDIAKAISMMK 175
Query: 147 TPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIKIEPIP 204
F K+D D+ + + + K ++ R + I
Sbjct: 176 KEFYFVRTKVD----------SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 37.6 bits (88), Expect = 0.003
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 99 IDTPGHESF-SNLRNRGSSLCDIAILVVDIMHGL-EPQTIESINILKSKKTP-FVVALNK 155
ID PGHE + + + G++L D AILVV +PQT E L ++ NK
Sbjct: 80 IDAPGHEVLMATMLS-GAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNK 138
Query: 156 ID 157
+D
Sbjct: 139 VD 140
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 36.8 bits (86), Expect = 0.003
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 110 LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL-YNWNTMNRR 168
L R SL + ++++DI H L+ + I +V L K D+L
Sbjct: 103 LEKR-QSLQGL-VVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN 160
Query: 169 DVRDIIKSQESSVQTHKTVESARKGQ 194
VR+ + + VQ S+ K Q
Sbjct: 161 MVREAVLAFNGDVQVETF--SSLKKQ 184
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 36.1 bits (84), Expect = 0.004
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 28/95 (29%)
Query: 92 EIPGLLIIDTPGHESFSN----------------LRNRGSSLCDIAILVVDIMH------ 129
E IID PG + + ++ D+A+LVVD
Sbjct: 42 EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI-DVAVLVVDGKAAPEIIK 100
Query: 130 -----GLEPQTIESINILKSKKTPFVVALNKIDRL 159
G P +E L+ P +VA+NK+D++
Sbjct: 101 RWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 135
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 36.3 bits (85), Expect = 0.007
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 99 IDTPG-----HESFSN---LRNRGSSL--CDIAILVVDIMHGLEPQTIESI-NILKSKKT 147
+DTPG + SL D+ + ++D G P+ E N +K
Sbjct: 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK 123
Query: 148 PFVVALNKIDRL 159
P +V +NKID++
Sbjct: 124 PVIVVINKIDKI 135
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 36.4 bits (85), Expect = 0.008
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
++D PG+ F D A++ V G++ T + + + P +V + K+D
Sbjct: 78 LLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD 137
Query: 158 R 158
+
Sbjct: 138 K 138
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 35.8 bits (83), Expect = 0.011
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------LEPQTIESINILKS---KKT 147
+ID PGH F G+S D AIL++ G + QT E + + ++
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQ- 147
Query: 148 PFVVALNKID 157
+VA+NK+D
Sbjct: 148 -LIVAVNKMD 156
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 35.7 bits (82), Expect = 0.012
Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 25/160 (15%)
Query: 5 FNKRREKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGAT 64
+ + E+ E ++ V ++G GKT +L +L E+ Q G
Sbjct: 22 YFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES----QTHGLN 77
Query: 65 NVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSN-----LRNRGSSLCD 119
V A E D G E +
Sbjct: 78 VVTKQAPNIKGLENDDELKEC---------LFHFWDFGGQEIMHASHQFFMTRS-----S 123
Query: 120 IAILVVDIMHGLEPQT-IESINILKSKKTPFVVALNKIDR 158
+ +L++D + I K+P +V +NKID
Sbjct: 124 VYMLLLDSRTDSNKHYWLRHIE-KYGGKSPVIVVMNKIDE 162
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 35.0 bits (81), Expect = 0.016
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 110 LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
L+ R LC + IL++D L I P L K D+L
Sbjct: 110 LQTR-PQLCGM-ILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 35.4 bits (82), Expect = 0.016
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 98 IIDTPGHESFSNLRN--RGSSLCDIAILVVDIMHG-------LEPQTIESINILKS---K 145
++D PGH+ + + N G+S DI +LV+ G QT E + ++
Sbjct: 125 LLDAPGHKGY--VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGIN 182
Query: 146 KTPFVVALNKID 157
VV +NK+D
Sbjct: 183 H--LVVVINKMD 192
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 34.4 bits (80), Expect = 0.018
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 110 LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
+ R L + + +VD+ H ++ LK P +V K D++
Sbjct: 100 ITTR-EELKAV-VQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 34.1 bits (79), Expect = 0.022
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 110 LRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRL 159
+NR SL + L+VD + + + +KS PF + L K+D++
Sbjct: 99 FKNR-WSLQMV-FLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 34.8 bits (81), Expect = 0.025
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
D+ I +V+ G+ E IL K P V+A+NK+D
Sbjct: 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 122
Score = 31.3 bits (72), Expect = 0.29
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 97 LIIDTPG----------HESFSNLRNRGS-SLCDIAILVVDIMHGLEPQ--TIESINILK 143
+I+DT G E +S LR + ++ +V+D G+ Q I +
Sbjct: 226 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGY-AHE 284
Query: 144 SKKTPFVVALNKID 157
+ K V+ +NK D
Sbjct: 285 AGK-AVVIVVNKWD 297
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 34.4 bits (80), Expect = 0.027
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 96 LLIIDTPG-HESFSNLRNR-----GSSL--CDIAILVVDIMHGLEPQTIESINILK--SK 145
++ +DTPG H+ L +L + + VVD+ H P+ LK
Sbjct: 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG 116
Query: 146 KTPFVVALNKIDRL 159
K P ++ NK+D
Sbjct: 117 KVPILLVGNKLDAA 130
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 34.2 bits (79), Expect = 0.031
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 16/72 (22%)
Query: 98 IIDTPGHESFSNLRN--RGSSLCDIAILVVDIMHG-------LEPQTIESINILKS---K 145
IID PGH F ++N G+S D AILVV G +E QT E I + K+
Sbjct: 88 IIDAPGHRDF--VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLD 145
Query: 146 KTPFVVALNKID 157
+ +VA+NK+D
Sbjct: 146 Q--LIVAVNKMD 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.041
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 15/65 (23%)
Query: 32 HVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPAD---AIRENTKHVR--GPGGEVG 86
G D LR + + I I +P + H+ GPGG
Sbjct: 461 DTFDGS----D-LR--VLSGSISERIVDCI--IRLPVKWETTTQFKATHILDFGPGG-AS 510
Query: 87 GPGPL 91
G G L
Sbjct: 511 GLGVL 515
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 33.8 bits (78), Expect = 0.044
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 98 IIDTPGHESFSNLRN--RGSSLCDIAILVVDIMHG-------LEPQTIESINILKS---K 145
I+D PGH F + N G S D+AIL VD L+ QT E + + S
Sbjct: 115 IVDAPGHRDF--VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 172
Query: 146 KTPFVVALNKID 157
++A+NK+D
Sbjct: 173 N--LIIAMNKMD 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 34.1 bits (78), Expect = 0.047
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 99 IDTPGHESFSNLRN--RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT---PFVVAL 153
+D PGH + ++N G++ D AILVV G PQT E +IL ++ +V L
Sbjct: 364 VDCPGHADY--VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQVGVPYIIVFL 419
Query: 154 NKID 157
NK D
Sbjct: 420 NKCD 423
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 33.9 bits (78), Expect = 0.049
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 98 IIDTPGHESFSNLRN--RGSSLCDIAILVVDIMHG-------LEPQTIESINILKS---K 145
I D PGH F + G+S D A+LVVD QT E +L++
Sbjct: 259 IGDAPGHRDF--ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGIS 316
Query: 146 KTPFVVALNKID 157
+ VV++NK+D
Sbjct: 317 E--IVVSVNKLD 326
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 33.9 bits (78), Expect = 0.050
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 98 IIDTPGHESFSNLRN--RGSSLCDIAILVVDIMHG-------LEPQTIESINILKS---K 145
I+D PGH F + N G S D+AIL VD L+ QT E + + S
Sbjct: 249 IVDAPGHRDF--VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 306
Query: 146 KTPFVVALNKID 157
++A+NK+D
Sbjct: 307 N--LIIAMNKMD 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 32.8 bits (76), Expect = 0.050
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
++ + VD L E L+ K P ++ K+D
Sbjct: 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVD 119
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 33.7 bits (78), Expect = 0.053
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178
DI + V+D L+ + + + +K+K ++V +NK+D + +N ++++ + +
Sbjct: 325 DIVLFVLDASSPLDEEDRKILERIKNK--RYLVVINKVDVV---EKINEEEIKNKLGTDR 379
Query: 179 SSVQTHKTVESARKGQEI 196
V+ SA KG+ +
Sbjct: 380 HMVKI-----SALKGEGL 392
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 33.4 bits (77), Expect = 0.056
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 119 DIAILVVDIMHGLEPQTIESINI-------LKSKKTPFVVALNKIDRLYNWNTMNRRDVR 171
D ILV+D E IE++ + P +V LNKID++ N + + D+
Sbjct: 259 DALILVIDSTFS-ENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI-NGDLYKKLDLV 316
Query: 172 DIIKSQESSVQTHKTVESARKGQEI 196
+ + + S SA K +
Sbjct: 317 EKLSKELYSPIFDVIPISALKRTNL 341
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 33.6 bits (78), Expect = 0.060
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
D+ + VVD G+ + + L+ ++ NK +
Sbjct: 83 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 121
Score = 30.2 bits (69), Expect = 0.71
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 16/75 (21%)
Query: 97 LIIDTPG-----------HESFSNLRNRGS-SLCDIAILVVDIMHGLEPQ--TIESINIL 142
+ +DT G E +SN R S D+ ++V+D G+ Q + + +
Sbjct: 231 VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGL-ME 289
Query: 143 KSKKTPFVVALNKID 157
+ + VV NK D
Sbjct: 290 RRGR-ASVVVFNKWD 303
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 32.9 bits (76), Expect = 0.087
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 99 IDTPGHESFSNLRN--RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPF-VVALNK 155
D PGH + ++N G++ D ILVV G PQT E + + + VV +NK
Sbjct: 71 TDCPGHADY--VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNK 128
Query: 156 ID 157
D
Sbjct: 129 AD 130
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 32.2 bits (74), Expect = 0.14
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 99 IDTPGHESFSNLRN--RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKT---PFVVAL 153
+D PGH + ++N G++ D AILVV G PQT E +IL +++ VV +
Sbjct: 80 VDCPGHADY--IKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQVGVPYIVVFM 135
Query: 154 NKID 157
NK+D
Sbjct: 136 NKVD 139
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 32.1 bits (72), Expect = 0.18
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 88 PGPLEIPGLLIIDTPGHES-----------FSNLRNRGSSLCDIAILVVDIMHG-LEPQT 135
P + + + IIDTPG S F + + D+ IL+ D + +
Sbjct: 149 PNQV-LESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF 207
Query: 136 IESINILKSKKTPFVVALNKIDRL 159
E+I L+ + V LNK D +
Sbjct: 208 SEAIGALRGHEDKIRVVLNKADMV 231
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 31.7 bits (73), Expect = 0.24
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 98 IIDTPGHESFSNLRNRGSSL--CDIAILVVDIMHGLEPQT 135
IIDTPGH F+ R S+ D AI+V D G+EPQ+
Sbjct: 81 IIDTPGHVDFTIEVER--SMRVLDGAIVVFDSSQGVEPQS 118
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 31.7 bits (73), Expect = 0.24
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 98 IIDTPGHESFSNLRNRGSSL--CDIAILVVDIMHGLEPQT 135
IIDTPGH F+ R S+ D A++V + G++PQ+
Sbjct: 86 IIDTPGHVDFTIEVER--SMRVLDGAVMVYCAVGGVQPQS 123
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 31.7 bits (73), Expect = 0.25
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 98 IIDTPGHESFSNLRNRGSSL--CDIAILVVDIMHGLEPQT 135
IIDTPGH F+ R SL D A+ V+D G+EPQT
Sbjct: 79 IIDTPGHVDFTVEVER--SLRVLDGAVTVLDAQSGVEPQT 116
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 30.9 bits (71), Expect = 0.39
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 119 DIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
D+ +L +D G E +K + P ++ +NKID
Sbjct: 305 DLVLLTIDAATGWTTGDQEIYEQVKHR--PLILVMNKID 341
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 29.6 bits (67), Expect = 0.60
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN------ILK-SKKTP 148
L + DT G E ++ LR D+ IL ++ + E+++ + + P
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI---SKASYENVSKKWIPELKHYAPGVP 114
Query: 149 FVVALNKIDRLYNWNTMNRRDVRDIIKSQE 178
V+ K+D + I + +
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQ 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 29.7 bits (67), Expect = 0.62
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 96 LLIIDTPGHESFSNLRNR----GSSLCDIAILVVD---IMHGLEPQTIESINIL------ 142
+ ++D PGH + + I +VD L ++IL
Sbjct: 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 152
Query: 143 KSKKTPFVVALNKID 157
++A NK +
Sbjct: 153 CENGIDILIACNKSE 167
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 30.2 bits (69), Expect = 0.65
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 119 DIAILVVDIMHGLEPQTIESINILKS--KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKS 176
D+ + ++D+ + I LK+ F+ NK+DR D +
Sbjct: 314 DLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRA---------ANADALIR 364
Query: 177 QESSVQTHKTVE-SARKGQEI 196
+ + + SA G I
Sbjct: 365 AIADGTGTEVIGISALNGDGI 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 29.5 bits (67), Expect = 0.69
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I+DT G E +S +R++ + + V I ++ I I + K +
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN---NSKSFADINLYREQIKRVKDSDDV 127
Query: 148 PFVVALNKID 157
P V+ NK D
Sbjct: 128 PMVLVGNKCD 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.7 bits (67), Expect = 0.74
Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 40/144 (27%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ + G ++GKT +L L + + P A + V
Sbjct: 15 IIIAGPQNSGKTSLLTLLT---------TDSVRPTVVSQEPLSAADYDGSGVT------- 58
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNR----GSSLCDIAILVVD---IMHGLEPQTIESI 139
++D PGH + + I +VD L +
Sbjct: 59 -----------LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLV 107
Query: 140 NIL------KSKKTPFVVALNKID 157
+IL ++A NK +
Sbjct: 108 DILSITESSCENGIDILIACNKSE 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 29.8 bits (67), Expect = 0.93
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 24/82 (29%)
Query: 98 IIDTPG-------------HESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIES-INILK 143
IIDTPG ++ LR ++ I + D +E I++ +
Sbjct: 218 IIDTPGLLDRPISERNEIEKQAILALRYL----GNLIIYIFDP-SEHCGFPLEEQIHLFE 272
Query: 144 S-----KKTPFVVALNKIDRLY 160
K PF+V +NKID
Sbjct: 273 EVHGEFKDLPFLVVINKIDVAD 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.9 bits (64), Expect = 1.1
Identities = 21/152 (13%), Positives = 55/152 (36%), Gaps = 5/152 (3%)
Query: 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEV 85
I+ ++G D+GKT ++ ++ + G + ++ + D +++ + G +V
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADV 63
Query: 86 GGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIE---SINIL 142
P+++ I E L D +++ + I +
Sbjct: 64 VIASPVKL--AFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEV 121
Query: 143 KSKKTPFVVALNKIDRLYNWNTMNRRDVRDII 174
+ + ++A+ +R+ R +V I
Sbjct: 122 EHFRQGRILAVVCDERVDGHKWFRRDEVERIA 153
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 5/80 (6%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNK-- 155
IID P ++ L I+ P I + L +
Sbjct: 55 IIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPA 114
Query: 156 ---IDRLYNWNTMNRRDVRD 172
+ + + +N +R
Sbjct: 115 AGDLRAAFPDDNLNILPMRG 134
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 28.7 bits (65), Expect = 1.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I+DT G E +S +R++ + + V I ++ E I I + K +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN---NTKSFEDIHHYREQIKRVKDSEDV 110
Query: 148 PFVVALNKID 157
P V+ NK D
Sbjct: 111 PMVLVGNKCD 120
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.2 bits (65), Expect = 1.4
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 105 ESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKID 157
+ F + N + + +VDI + + ++ NK D
Sbjct: 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNN--KVLLVGNKAD 107
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.9 bits (65), Expect = 1.5
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN-----ILK--SKKTP 148
L + DT G E +S LR DI +L ++ + E++ L+ + P
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI---SKASYENVLKKWMPELRRFAPNVP 115
Query: 149 FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARK 192
V+ K+D RD + + + + + + E ++
Sbjct: 116 IVLVGTKLD---------LRDDKGYLADHTNVITSTQGEELRKQ 150
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 28.7 bits (65), Expect = 1.5
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L ++DT G E FS +R + D ++V + + + E + IL+ K
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV---TDKASFEHVDRFHQLILRVKDRESF 124
Query: 148 PFVVALNKID 157
P ++ NK+D
Sbjct: 125 PMILVANKVD 134
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 28.2 bits (64), Expect = 1.9
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I+DT G E +S +R++ + + V I ++ E I I + K +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAI---NNTKSFEDIHQYREQIKRVKDSDDV 109
Query: 148 PFVVALNKID 157
P V+ NK D
Sbjct: 110 PMVLVGNKSD 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 28.3 bits (64), Expect = 1.9
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 119 DIAILVVDIMHGLEP---QTIESINILKSKKTPFVVALNKID 157
D + +VD + K P V NK D
Sbjct: 85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 28.2 bits (63), Expect = 2.1
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK---------SKK 146
L + DT G E + LR D++++ ++ P + E N+
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV---SPASFE--NVRAKWYPEVRHHCPN 109
Query: 147 TPFVVALNKIDRLYNWNTMNR 167
TP ++ K+D + +T+ +
Sbjct: 110 TPIILVGTKLDLRDDKDTIEK 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.1
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 182 QTHKTVESARKGQEICIKIEPIPGEAPKM 210
Q K ++++ +K+ AP +
Sbjct: 20 QALKKLQAS-------LKLYA-DDSAPAL 40
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 28.6 bits (64), Expect = 2.4
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 5/80 (6%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVV-----A 152
+ DT E L +S+ D + ++ LE ++ L P +
Sbjct: 47 LFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLG 106
Query: 153 LNKIDRLYNWNTMNRRDVRD 172
++ +++ + V+
Sbjct: 107 QKAMESHFHYKDWPVQVVKH 126
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.7 bits (62), Expect = 2.5
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN------ILK-SKKTP 148
L + DT G + N+R D ++ DI P+T++S+ I + T
Sbjct: 57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS---RPETLDSVLKKWKGEIQEFCPNTK 113
Query: 149 FVVALNKID 157
++ K D
Sbjct: 114 MLLVGCKSD 122
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 27.8 bits (63), Expect = 2.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I+DT G E F+++R+ ILV + + Q+ + I I++ K+
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSL---VNQQSFQDIKPMRDQIIRVKRYEKV 109
Query: 148 PFVVALNKID 157
P ++ NK+D
Sbjct: 110 PVILVGNKVD 119
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 27.5 bits (62), Expect = 2.8
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I+DT G E F+ +R+ LV I T + IL+ K T
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT---AQSTFNDLQDLREQILRVKDTEDV 109
Query: 148 PFVVALNKID 157
P ++ NK D
Sbjct: 110 PMILVGNKCD 119
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 27.9 bits (62), Expect = 2.9
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL-------KSKKTP 148
L + DT G + N+R S D +L DI P+T++S T
Sbjct: 77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS---RPETVDSALKKWRTEILDYCPSTR 133
Query: 149 FVVALNKIDRLYNWNTMNR 167
++ K D + +T+
Sbjct: 134 VLLIGCKTDLRTDLSTLME 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 27.8 bits (62), Expect = 3.2
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK---------SKK 146
L + DT G E + LR D+ ++ ++ P + E N+
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLV---SPASFE--NVRAKWYPEVRHHCPN 134
Query: 147 TPFVVALNKIDRLYNWNTMNR 167
TP ++ K+D + +T+ +
Sbjct: 135 TPIILVGTKLDLRDDKDTIEK 155
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, struc genomics consortium, lyase;
HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB:
2guu_A*
Length = 353
Score = 27.9 bits (61), Expect = 4.0
Identities = 6/62 (9%), Positives = 14/62 (22%)
Query: 191 RKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDLQKTDWQLMV 250
+CI ++P + V K S + + + +
Sbjct: 31 EVNTCLCIGLDPDEADIKSFMQSEKQNGYQSVKKNLSNSGSSSSSSNSSSGKGELFAPQM 90
Query: 251 DL 252
Sbjct: 91 GG 92
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 27.5 bits (61), Expect = 4.2
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK---------SKK 146
L + DT G E + LR + D+ ++ ++ P + + N+ + +
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV---NPASFQ--NVKEEWVPELKEYAPN 122
Query: 147 TPFVVALNKID 157
PF++ +ID
Sbjct: 123 VPFLLIGTQID 133
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 4.2
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L ++DT G + +S L +LV + + + I + +
Sbjct: 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSV---TSLHSFQVIESLYQKLHEGHGKTRV 130
Query: 148 PFVVALNKID 157
P V+ NK D
Sbjct: 131 PVVLVGNKAD 140
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 27.4 bits (61), Expect = 4.5
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 98 IIDTPG-----HESFSNLRNRGSS----LCDIAILVVDIMHGLEPQTIES-INILKS--- 144
IIDTPG E+ + + + + + + ++DI TI+ IN+ S
Sbjct: 80 IIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDI-SEQCGLTIKEQINLFYSIKS 138
Query: 145 --KKTPFVVALNKIDRL 159
V+ NKID+
Sbjct: 139 VFSNKSIVIGFNKIDKC 155
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 27.6 bits (61), Expect = 4.5
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILK---------SKK 146
L + DT G E + LR D+ ++ ++ P + ++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV---SPASFH--HVRAKWYPEVRHHCPN 259
Query: 147 TPFVVALNKID 157
TP ++ K+D
Sbjct: 260 TPIILVGTKLD 270
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 27.5 bits (61), Expect = 5.0
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVV-----A 152
++DT L + + D L +++ E + + V A
Sbjct: 48 LVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRA 107
Query: 153 LNKIDRLYNWNTMNRRDVRD 172
+ + Y+ N V+
Sbjct: 108 FDSLKAHYSHIDFNYTIVKT 127
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 26.7 bits (60), Expect = 5.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I+DT G E F +R + +LV I + Q+ + IL+ K
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAI---NDRQSFNEVGKLFTQILRVKDRDDF 115
Query: 148 PFVVALNKID 157
P V+ NK D
Sbjct: 116 PVVLVGNKAD 125
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 26.7 bits (60), Expect = 5.4
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
+ I+DT G E ++ +R+ + + V I E ++ + IL+ K+
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSI---TEMESFAATADFREQILRVKEDENV 110
Query: 148 PFVVALNKID 157
PF++ NK D
Sbjct: 111 PFLLVGNKSD 120
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 26.7 bits (60), Expect = 6.0
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L ++DT G + +S S + ILV + ++ E I +L
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSV---TSIKSFEVIKVIHGKLLDMVGKVQI 112
Query: 148 PFVVALNKID 157
P ++ NK D
Sbjct: 113 PIMLVGNKKD 122
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 26.8 bits (60), Expect = 6.5
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 16/70 (22%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESIN-----ILKSKKT--- 147
LLI D G D + V + + + +++ + +
Sbjct: 69 LLIRDEGGPPELQFAAW-----VDAVVFVFSL---EDEISFQTVYNYFLRLCSFRNASEV 120
Query: 148 PFVVALNKID 157
P V+ +
Sbjct: 121 PMVLVGTQDA 130
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 26.6 bits (59), Expect = 6.6
Identities = 28/143 (19%), Positives = 45/143 (31%), Gaps = 38/143 (26%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V +G D+GKT + +L G+ I +++ +
Sbjct: 10 VLFVGLCDSGKTLLFVRL-----LTGQYRDTQTSIT----------DSSAIYK------- 47
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRG----SSLCDIAILVVD---IMHGLEPQTIESI 139
L +ID PGHES LR + S + VVD ++
Sbjct: 48 -VNNNRGNSLTLIDLPGHES---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLY 103
Query: 140 NILKS-----KKTPFVVALNKID 157
+L ++A NK D
Sbjct: 104 QVLIDSMALKNSPSLLIACNKQD 126
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex,
lipid binding PROT; HET: PLM; 1.30A {Penicillium
marneffei}
Length = 194
Score = 26.8 bits (58), Expect = 6.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 121 AILVVDIMHGLEPQTIESINILKSKKTPFVVA 152
A+ +V + L Q + +I L KK P V A
Sbjct: 109 ALALVGPVQDLSNQIMLAIQNLIDKKEPLVQA 140
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural
genomics, PSI-2, protein structure initiative, northeast
structural genomics consortium; 3.10A {Homo sapiens}
Length = 107
Score = 25.7 bits (56), Expect = 6.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 231 DACKDYFRDDLQKTDWQLMVDLKK 254
CKD L++T L+++L +
Sbjct: 78 RKCKDGLYQALKETHPHLIMELWE 101
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 27.1 bits (60), Expect = 7.1
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 98 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVV-----A 152
+ID+ + +R ++ C + + +M+ E S+ K T
Sbjct: 53 VIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKC 112
Query: 153 LNKIDRLYNWNTMNRRDVRD 172
+ LY V D
Sbjct: 113 QEHLKILYGMEKATWLIVDD 132
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 26.3 bits (59), Expect = 7.6
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL---------KSKK 146
L I DT G F ++ S ILV I Q++E + + +
Sbjct: 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSI---TSRQSLEELKPIYEQICEIKGDVES 109
Query: 147 TPFVVALNKID 157
P ++ NK D
Sbjct: 110 IPIMLVGNKCD 120
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 26.5 bits (58), Expect = 8.0
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 113 RGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSK---KTPFVVALNKID 157
G L D +L +D+ G + + N+ K P VV L K D
Sbjct: 158 DGKLLVDGFLLGIDVSRG-MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCD 209
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 26.8 bits (60), Expect = 9.4
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 75 TKHVRGPGGEVGGPGPLEIPGLLIIDTPG-HESFSNLRNR 113
+ G P +PG L + P +L +
Sbjct: 16 AHLLWGRWKLRNLHLPPLVPGFLHLLQPNLPIHLLSLTQK 55
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 26.0 bits (58), Expect = 9.7
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 96 LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESI-----NILKSKKT--- 147
L I DT G F ++ S ILV + Q++E + I++ K +
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSV---TSKQSLEELGPIYKLIVQIKGSVED 114
Query: 148 -PFVVALNKID 157
P ++ NK D
Sbjct: 115 IPVMLVGNKCD 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,980,457
Number of extensions: 238083
Number of successful extensions: 1193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 118
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)