RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6316
(259 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 82.3 bits (203), Expect = 9e-20
Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 44/191 (23%)
Query: 27 VCVLGHVDTGKTKILDKL-----------------RRTNVQDGEAGGITQQIGATNVPAD 69
V +GHVD GKT + L + A GIT
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 70 AIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH 129
+ +D PGH + G++ D AILVV
Sbjct: 66 KRHYS-----------------------HVDCPGHADYIKNMITGAAQMDGAILVVSAAD 102
Query: 130 GLEPQTIESINILKSKKTPFVV-ALNKIDRLYNWNTMNR--RDVRDIIKSQE-SSVQTHK 185
G PQT E I + + P++V +NK+D + + ++ +VRD++ E +
Sbjct: 103 GPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPV 162
Query: 186 TVESARKGQEI 196
SA E
Sbjct: 163 IRGSALLALEQ 173
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 81.3 bits (200), Expect = 8e-19
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 5/156 (3%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ + H+D GKT +++ + + G + + +
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 68
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK 146
+ I ID PGH F+ R + D AI+V D G+EPQ+ + K
Sbjct: 69 KDHRINI-----IDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 123
Query: 147 TPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182
P + NK+D+ + R +++ + ++ +Q
Sbjct: 124 VPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQ 159
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 77.1 bits (190), Expect = 1e-18
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 174 IKSQESSVQTH-KTVESARKGQEICIKIEPIPGEAPKMFGRHFDENDFLVSKISRQSIDA 232
S+Q + ++SA +GQ++ + I+ ++G+ E D L I
Sbjct: 45 TVGTVESMQDKGENLKSASRGQKVAMAIKDA------VYGKTIHEGDTLYVDIPENHYHI 98
Query: 233 CKDYFRDDLQKTDWQLMVDLKKVFQ 257
K+ DL + LM + ++ +
Sbjct: 99 LKEQLSGDLTDEELDLMDKIAEIKR 123
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 80.0 bits (196), Expect = 2e-18
Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 35/199 (17%)
Query: 26 IVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADA---IRENTKHVRGPG 82
IV +G +GKT + + R + + + G +P + +RE
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 83 GEVGGPGPLEIPGLLI----------------------IDTPGHESFSNLRNRGSSLCD- 119
G G + + IDTPG G L +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 120 ----IAILVVDIMHGLEPQTIESINILKSK-----KTPFVVALNKIDRLYNWNTMNRRDV 170
+ + + D +P + + ALNK+D L R
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 181
Query: 171 RDIIKSQESSVQTHKTVES 189
+ I + ++ +++
Sbjct: 182 FEDIDYLTARLKLDPSMQG 200
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 78.6 bits (192), Expect = 4e-18
Identities = 83/211 (39%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGP 81
+R+ IV VLGHVD GKT +LD +R + V EAGGITQ IGAT +P D I
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFL-- 60
Query: 82 GGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINI 141
+PGL IDTPGHE+F+ LR RG +L D+AIL+VDI G +PQT E++NI
Sbjct: 61 ---KKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117
Query: 142 LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESAR-KGQEICIKI 200
L+ +TPFVVA NKIDR++ W R + Q+ VQ + G+
Sbjct: 118 LRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGF 177
Query: 201 EPIPGEAPKMFGRHFDENDFLVSKISRQSID 231
E + F + +S I+ + I
Sbjct: 178 ESERFDRVTDFASQV--SIIPISAITGEGIP 206
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 74.3 bits (182), Expect = 7e-17
Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 43/189 (22%)
Query: 27 VCVLGHVDTGKTKILDKLRRT----------------NVQDGEAGGITQQIGATNVPADA 70
V +GHVD GKT + + + N + A GIT A
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 71 IRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG 130
D PGH + G++ D ILVV G
Sbjct: 66 RHYA-----------------------HTDCPGHADYVKNMITGTAPLDGCILVVAANDG 102
Query: 131 LEPQTIESINILKS-KKTPFVVALNKIDRLYNWNTMNR--RDVRDIIKSQESSVQTHKTV 187
PQT E + + + VV +NK D + + + ++R+++ + +
Sbjct: 103 PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII 162
Query: 188 E-SARKGQE 195
SA E
Sbjct: 163 VGSALCALE 171
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 74.4 bits (182), Expect = 5e-16
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 25/180 (13%)
Query: 9 REKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTN--VQDGEAG----------- 55
+++ + +R + V+ HVD GK+ + D L + + +AG
Sbjct: 4 VDQMRSLMDKVTNVRN--MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDE 61
Query: 56 ---GITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRN 112
GIT + A ++ ++ E+ K ++ + +ID+PGH FS+
Sbjct: 62 QERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS-------FLINLIDSPGHVDFSSEVT 114
Query: 113 RGSSLCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRD 172
+ D A++VVD + G+ QT + ++ VV +NK+DR +++ D+
Sbjct: 115 AALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQ 174
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 68.7 bits (167), Expect = 2e-14
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 27 VCVLGHVDTGKTKILDKL------------RRTNVQDGEAGGITQQIGATNVPADAIREN 74
+ V+GHVD GK+ ++ +L + + G +++ RE
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 65
Query: 75 TKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG---- 130
+ IID PGH F G+S D AILVV G
Sbjct: 66 GVTINLTFMRFETKKYFFT----IIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA 121
Query: 131 ---LEPQTIESINILKSKKTPF-VVALNKIDR 158
+E QT E I + K+ +VA+NK+D
Sbjct: 122 GMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 153
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 65.0 bits (158), Expect = 3e-13
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 20/198 (10%)
Query: 27 VCVLGHVDTGKTKILDKL-----RRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGP 81
V V+GHVD+GK+ L + ++G + + + K R
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 82 GGEV-GGPGPLEIPG--LLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG-------L 131
G + E P + +ID PGH F G+S D AIL++ G
Sbjct: 69 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK 128
Query: 132 EPQTIESINILKSKKTP-FVVALNKIDRLYN----WNTMNRRDVRDIIKSQESSVQTHKT 186
+ QT E + + +VA+NK+D + + + + I K +
Sbjct: 129 DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFV 188
Query: 187 VESARKGQEICIKIEPIP 204
S G + P
Sbjct: 189 PISGWNGDNMIEATTNAP 206
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 64.5 bits (156), Expect = 4e-13
Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 27/199 (13%)
Query: 27 VCVLGHVDTGKTKILDKL----------------RRTNVQDGEAGGITQQIGATNVPADA 70
G+VD GK+ ++ +L R + + + + A+
Sbjct: 12 FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAER 71
Query: 71 IRENTKHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG 130
+ T V +I DTPGHE ++ G+S CD+AI++VD +G
Sbjct: 72 EQGITIDVAYRYFST------AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 131 LEPQTIESINILKSKKTPFVVALNKIDRLYNWNTM-NRRDVRDIIKSQESSVQTHKTVE- 188
++ QT I +V L ++ D +K E T+
Sbjct: 126 VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 185
Query: 189 ---SARKGQEICIKIEPIP 204
SA KG + K E P
Sbjct: 186 VPMSALKGDNVVNKSERSP 204
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 53.4 bits (127), Expect = 2e-09
Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 14/190 (7%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDG----------EAGGITQQIGATNVPADAIRENTK 76
+ V+GHVD GKT ++ + + G IG T+
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 77 HVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTI 136
G P L + ID PGHE G++L D AILVV
Sbjct: 71 PSCKSCGSDDEPKFLRR--ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128
Query: 137 ES--INILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQ 194
+ + ++ NK+D + +++ + SA
Sbjct: 129 REHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKI 188
Query: 195 EICIKIEPIP 204
I IE I
Sbjct: 189 NIDSLIEGIE 198
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 51.8 bits (123), Expect = 2e-08
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 7/144 (4%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADA-IRENTKHVRGPGGEV 85
V ++GH +GKT + + L G + + T+ +A + T
Sbjct: 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVA---- 60
Query: 86 GGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK 145
P + ++D PG+ F D A++ V G++ T + + +
Sbjct: 61 --PLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 118
Query: 146 KTPFVVALNKIDRLYNWNTMNRRD 169
P +V + K+D+ ++ +
Sbjct: 119 GLPRMVVVTKLDKGGDYYALLEDL 142
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 47.9 bits (113), Expect = 3e-07
Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 25/219 (11%)
Query: 10 EKIEENPEDENFMRAAI-VCVLGHVDTGKTKILDKLRR-----TNVQDGEAGGITQQIGA 63
++++ + + + + + +GHVD GK+ + + + ++ G
Sbjct: 9 NEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGK 68
Query: 64 TNVPADAIRENTKHVRGPGGEVGGPGPLE---IPGLLIIDTPGHESFSNLRNRGSSLCDI 120
+ ++T R G V ++D PGH+ + G+S DI
Sbjct: 69 ESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADI 128
Query: 121 AILVVDIMHGLEP-------QTIESINILKSKKTPF-VVALNKIDR-LYNWNTMNRRDVR 171
+LV+ G QT E + +++ VV +NK+D W+ ++
Sbjct: 129 GVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECV 188
Query: 172 DIIKSQESSVQTHKTVE-------SARKGQEICIKIEPI 203
D + V + + SA GQ + +++
Sbjct: 189 DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS 227
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 45.7 bits (107), Expect = 1e-06
Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 5/175 (2%)
Query: 27 VCVLGHVDTGKTKILDKLRRT---NVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGG 83
+ ++GHVD GKT + L + GIT +IG + ++ P
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 84 EVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIM-HGLEPQTIESINIL 142
G + + ID PGHE+ G+SL D AILV+ PQT E + L
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 127
Query: 143 KSKKTP-FVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEI 196
+ ++A NKI+ + + + SA G I
Sbjct: 128 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANI 182
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 43.6 bits (102), Expect = 4e-06
Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 25/171 (14%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ ++G GK+ +L + + + + + I K V G +V
Sbjct: 5 ILLIGDSGVGKSCLLVRF------------VEDKFNPSFITTIGIDFKIKTVDINGKKVK 52
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKK 146
L I DT G E F + ILV DI +T +I
Sbjct: 53 ---------LQIWDTAGQERFRTITTAYYRGAMGIILVYDITD---ERTFTNIKQWFKTV 100
Query: 147 TPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVE-SARKGQEI 196
++ + N + M R V + +E SA+ +
Sbjct: 101 NEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNV 151
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 42.0 bits (97), Expect = 2e-05
Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 15/182 (8%)
Query: 16 PEDENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENT 75
PE + ++ AIV G + GK+ + + + + + +
Sbjct: 3 PEITDAIKVAIV---GRPNVGKSTLFNAILNKER----------ALVSPIPGTTRDPVDD 49
Query: 76 KHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT 135
+ V + + + D+ ++V+D G+ Q
Sbjct: 50 EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD 109
Query: 136 IESINILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVE-SARKGQ 194
+++ + VV NK D + + + + + + + SA KG
Sbjct: 110 QRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLIFTSADKGW 168
Query: 195 EI 196
I
Sbjct: 169 NI 170
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 41.7 bits (97), Expect = 2e-05
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 21/103 (20%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ ++G GKT +L + I + + G +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF------------KIRTIELDGKRIK 56
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH 129
L I DT G E F + +LV DI +
Sbjct: 57 ---------LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 90
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 40.2 bits (93), Expect = 6e-05
Identities = 26/174 (14%), Positives = 51/174 (29%), Gaps = 30/174 (17%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V ++G GK+ +L + R I + ++ D
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG---------------- 50
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIM----HGLEPQTIESINIL 142
+ I DT G E + + + A+LV DI + + ++ +
Sbjct: 51 -----KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 105
Query: 143 KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEI 196
++ NK D + K+ S ++T SA +
Sbjct: 106 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIET-----SALDSTNV 154
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 40.2 bits (93), Expect = 7e-05
Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 31/182 (17%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ ++G+ GKT ++ + + G+ I K V G +V
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF------------MIKTVEINGEKVK 55
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLE----PQTIESINIL 142
L I DT G E F ++ + IL DI P+ + I
Sbjct: 56 ---------LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 106
Query: 143 KSKKTPFVVALNKIDRLYNWNTMNRRDVRDI----IKSQESSVQTHKTVESARKGQEICI 198
S K V+ NKID +R + E+S + VE ++
Sbjct: 107 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF--LDLAC 164
Query: 199 KI 200
++
Sbjct: 165 RL 166
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 39.7 bits (91), Expect = 1e-04
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 2/172 (1%)
Query: 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGE 84
A + G + GK+ ++ +L V+ G+ G+T++I + + G
Sbjct: 1 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII-EIEWKNHKIIDMPGFGFMMGL 59
Query: 85 VGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKS 144
++ ++ I+ G P +E L+
Sbjct: 60 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE 119
Query: 145 KKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEI 196
P +VA+NK+D++ N + + + S + SA+ G I
Sbjct: 120 LDIPTIVAVNKLDKIKNVQ-EVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 170
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 39.5 bits (91), Expect = 1e-04
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 29/172 (16%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V+G+ TGK+ +L + +D I + G+ +
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG---------------- 51
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK- 145
+ L I DT G E F ++ A+LV DI + +
Sbjct: 52 -----KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 106
Query: 146 --KTPFVVALNKIDRLYNWNTMNRRDVRDIIKS-----QESSVQTHKTVESA 190
+ ++ L + + + E+S T + VE A
Sbjct: 107 ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 158
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 39.4 bits (91), Expect = 1e-04
Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 21/110 (19%)
Query: 18 DENFMRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKH 77
DE+ + + ++G GK+ +L + A I + D +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK--- 57
Query: 78 VRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDI 127
L I DT G E F L ILV D+
Sbjct: 58 ------------------LAIWDTAGQERFRTLTPSYYRGAQGVILVYDV 89
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 39.1 bits (90), Expect = 2e-04
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 21/103 (20%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ ++G+ GKT L + V I K + +
Sbjct: 8 ILIIGNSSVGKTSFLFRY------------ADDSFTPAFVSTVGIDFKVKTIYRNDKRIK 55
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH 129
L I DT G E + + IL+ DI +
Sbjct: 56 ---------LQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 89
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 38.5 bits (88), Expect = 4e-04
Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 33/157 (21%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V +G D+GKT + +L +D + IT V + T
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLT----------- 50
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEP--------QTIES 138
LI L +R S + VVD +
Sbjct: 51 ----------LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI 100
Query: 139 INILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIK 175
++ ++A NK D + + ++ ++
Sbjct: 101 DSMALKNSPSLLIACNKQDIA---MAKSAKLIQQQLE 134
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 36.3 bits (83), Expect = 0.002
Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 30/161 (18%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V V G +GK+ ++ LR ++ A T + T N +V
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAK-TGVVEVTMERHPYKHPNIPNVV------- 110
Query: 87 GPGPLEIPGLLIIDTPGHESFSN-----LRNRGSSLCDIAILVVDIMHGLEPQTIESINI 141
D PG S + L D I++ + I+
Sbjct: 111 -----------FWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKA 157
Query: 142 LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQ 182
+ K F K+D N D +E +Q
Sbjct: 158 ISMMKKEFYFVRTKVDSDIT----NEADGEPQTFDKEKVLQ 194
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 35.8 bits (81), Expect = 0.003
Identities = 22/222 (9%), Positives = 52/222 (23%), Gaps = 17/222 (7%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82
+ + G ++GKT +L L + G G
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLT-----TDSVRPTVVSQEPLSA---------ADYDGSG 47
Query: 83 GEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
+ + D + + + +
Sbjct: 48 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
Query: 143 KSKKTPFVVALNKIDRLYNWNTMNRRDV--RDIIKSQESSVQTHKTVE-SARKGQEICIK 199
++A NK + +D +I K E ++ VE +
Sbjct: 108 CENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENT 167
Query: 200 IEPIPGEAPKMFGRHFDENDFLVSKISRQSIDACKDYFRDDL 241
++ + F I+++ I +++ + L
Sbjct: 168 LDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 209
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 35.2 bits (80), Expect = 0.003
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 21/103 (20%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ ++G+ GK+ +L + + + K V G V
Sbjct: 9 LLLIGNSGVGKSCLLLRF------------SDDTYTNDYISTIGVDFKIKTVELDGKTVK 56
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH 129
L I DT G E F + + I+V D+
Sbjct: 57 ---------LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 90
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 32.5 bits (73), Expect = 0.028
Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 20/173 (11%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ LG GKT L + + V +A N +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH-- 65
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSK- 145
L + DT G E F +L +L+ D+ + +
Sbjct: 66 ---------LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 116
Query: 146 ---KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ-----ESSVQTHKTVESA 190
+ P +V + L + +N R R++ E+S T + VE A
Sbjct: 117 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 169
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 32.9 bits (74), Expect = 0.029
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 117 LCDIAILVVDIMHGLEPQTIESINILKSKKTPFVVALNKIDRLYNWNTMNRRD 169
L DI +VD + + +ILK+K P ++ LNK D+ T ++
Sbjct: 15 LIDIVYELVDARIPMSSRNPMIEDILKNK--PRIMLLNKADKADAAVTQQWKE 65
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.4 bits (72), Expect = 0.032
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQ 50
+ V ++G + GK+ +L+ L V
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVA 31
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 32.0 bits (71), Expect = 0.046
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 27 VCVLGHVDTGKTKILDKLRRT 47
+ + GH+D GKT + L
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEI 28
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 29.3 bits (64), Expect = 0.32
Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 21/192 (10%)
Query: 23 RAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPG 82
+ ++G + GK+ +L+KL + T + + + +
Sbjct: 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
Query: 83 GEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINIL 142
+ + + ++ I VV+ P +N L
Sbjct: 64 HMEEKRAI-------------NRLMNKAASSSIGDVELVIFVVEG-TRWTPDDEMVLNKL 109
Query: 143 KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQ---EICIK 199
+ K P ++A+NK+D + + + + SA G I
Sbjct: 110 REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI----SAETGLNVDTIAAI 165
Query: 200 IEPIPGEAPKMF 211
+ EA F
Sbjct: 166 VRKHLPEATHHF 177
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.1 bits (64), Expect = 0.39
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
V ++G GKT +L + + G R V G +
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGID---------FRNKVLDVDGVKVK-- 57
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMH 129
L + DT G E F ++ + +L+ D+ +
Sbjct: 58 ---------LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN 91
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus
thermophilus [TaxId: 274]}
Length = 134
Score = 28.4 bits (63), Expect = 0.49
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 17/85 (20%)
Query: 25 AIVCVLGHVDTGKTKILDKLRRTNVQDGEA------------GGITQQIGATNVPADAIR 72
A V+ H ++ KL+ QD EA G + ++ +
Sbjct: 1 ARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEENEVRRRAEEEAA 60
Query: 73 ENTKHVRGPG-----GEVGGPGPLE 92
+ + G + G PL
Sbjct: 61 AAKRALEAQGIPVEEAKAGDISPLL 85
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 28.6 bits (62), Expect = 0.50
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 25 AIVCVLGHVDTGKTKILDKLRRTNV 49
A V ++G + GK+ + +KL +
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKKKK 25
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 28.3 bits (61), Expect = 1.0
Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 93 IPGLLIIDTPGHESFSNLRNRGSSLCDIAILV------------VDIMHGLEPQTIESIN 140
+PG+ I G S++ RG++ + +L+ + ++ +
Sbjct: 46 LPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVE 105
Query: 141 ILK 143
++
Sbjct: 106 YIR 108
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 1.1
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQD 51
+ ++G +GKT ++ + +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNE 29
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.2 bits (59), Expect = 1.4
Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 25/171 (14%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ ++G + GK+ +L++L + T++P ++ + G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAI-----------VTDIPGTTRDVISEEIVIRGILF- 50
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSL-CDIAILVVDIMHGLEPQTIESINILKSK 145
++ G+ E R DI + V+D L+ + + + +K+K
Sbjct: 51 --RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNK 108
Query: 146 KTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEI 196
+ V+ + + + + +I + K SA KG+ +
Sbjct: 109 RYLVVI--------NKVDVVEKINEEEIKNKLGTDRHMVKI--SALKGEGL 149
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.6 bits (60), Expect = 1.6
Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 17 EDENFMRAAIVCVLGHVDTGKT-KILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENT 75
ED+ F + + + H GKT + L + R ++ G I T V A + E
Sbjct: 2 EDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAP---TRVVAAEMEEAL 58
Query: 76 KHVRGPGGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT 135
+ + ++ + F+ + + ++++D H +P +
Sbjct: 59 RGLPIRYQTPAIRAEHTGREIVDLMCHAT--FTMRLLSPIRVPNYNLIIMDEAHFTDPAS 116
Query: 136 IESINILKSKKTP 148
I + + ++
Sbjct: 117 IAARGYISTRVEM 129
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.8 bits (58), Expect = 1.8
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 31/173 (17%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
++G + GK+ +L + I + G + + +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ---------- 56
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHG----LEPQTIESINIL 142
I DT G E F + A++V DI + L
Sbjct: 57 -----------IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL 105
Query: 143 KSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQ-----ESSVQTHKTVESA 190
+ T ++ NK D + + + + E+S +T + VE A
Sbjct: 106 TNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 157
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 3.0
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 9 REKIEENPEDENFMRA-----AIVCVLGHVDTGKTKILDKLRRTN 48
++ NPE + A +V ++G TGK+ +++KL
Sbjct: 12 NGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 56
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.2 bits (56), Expect = 3.6
Identities = 27/201 (13%), Positives = 53/201 (26%), Gaps = 3/201 (1%)
Query: 22 MRAAIVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGP 81
+RA I VLG TGK+ I+ + + + +
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINK 86
Query: 82 GGEVGGPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGL--EPQTIESI 139
+ + + I G+E N + + + E+
Sbjct: 87 LVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 146
Query: 140 NILKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEICIK 199
++K + + AL + V+ ++ R + +K
Sbjct: 147 ELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK 206
Query: 200 IEPIPGEAPKMFGRHFDENDF 220
EA + R F E D
Sbjct: 207 -PFSREEAIEFLRRGFQEADI 226
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.5 bits (54), Expect = 5.4
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 10 EKIEENPEDENFMRAAIVCVLGHVDTGKTKILDKLRRTN 48
I P D V G + GK+ L+ L
Sbjct: 6 PDIRHLPSDTGIE----VAFAGRSNAGKSSALNTLTNQK 40
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.7 bits (55), Expect = 5.4
Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 33/175 (18%)
Query: 27 VCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVG 86
+ +LG GKT IL +L Q GE IG + + K+++
Sbjct: 20 ILILGLDGAGKTTILYRL-----QIGEVVTTKPTIG-----FNVETLSYKNLK------- 62
Query: 87 GPGPLEIPGLLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQT-----IESINI 141
L + D G S + I VVD T +
Sbjct: 63 ---------LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 113
Query: 142 LKSKKTPFVVALNKIDRLYNWNTMNRRDVRDIIKSQESSVQTHKTVESARKGQEI 196
+ + +V NK D+ + ++++ ++ S + SA KG+ I
Sbjct: 114 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS--SAIKGEGI 166
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 26.1 bits (57), Expect = 5.9
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 64 TNVPADAIREN----TKHVRGPGGEVGGPGPLEIPGLLIIDTP--GHESFSNLRNRGSSL 117
TN P D +REN G G + P E + + +P ++ +
Sbjct: 73 TNPPIDPLRENLVMSLAMFLGKRGNLLEPKA-ESARTIKLRSPLVNEVELQAIKTGQLQV 131
Query: 118 CDIAILV-VDIMHGLEPQTIESI 139
+++ L +D ++ LE + ++
Sbjct: 132 AEVSTLYDLDGVNSLE-DALTNL 153
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 25.0 bits (54), Expect = 7.7
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 42 DKLRRTNVQDGEAGGITQQIGATNVPADAIRENTKHVRGPGGEVGGPGPLEIPGLLI 98
D L + GEA T G ++ V + +E G+L+
Sbjct: 26 DSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLL 82
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 24.9 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 81 PGGEVGGPGPLEIPGLL 97
PGG V G G +PG+L
Sbjct: 293 PGGCVCGGGQPVMPGVL 309
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 971,545
Number of extensions: 44498
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 59
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.5 bits)