BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy632
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EKR|A Chain A, Moac Protein From E. Coli
          Length = 161

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 45/194 (23%)

Query: 180 VTYDRTGAEMEAID---KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 236
           +T+     E   +D   KA T R A+AEA V + SE   +I D    KGDV   A+IAGI
Sbjct: 4   LTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGI 63

Query: 237 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVL 296
             AK+T +LIPLCH ++LSKV+VNL+ +   +R+ + +      +TG EME         
Sbjct: 64  QAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEME--------- 114

Query: 297 SKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITD 356
                                            A+  A VAA+T+YDMCKAV KD+VI  
Sbjct: 115 ---------------------------------ALTAASVAALTIYDMCKAVQKDMVIGP 141

Query: 357 VRLMEKTGGVRGDY 370
           VRL+ K+GG  GD+
Sbjct: 142 VRLLAKSGGKSGDF 155



 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 75/118 (63%)

Query: 78  SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
           ++LTH+   G  +MVDV  KA T R A+AEA V + SE   +I D    KGDV   A+IA
Sbjct: 2   AQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIA 61

Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKA 195
           GI  AK+T +LIPLCH ++LSKV+VNL+ +   +R+ + +      +TG EMEA+  A
Sbjct: 62  GIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAA 119


>pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From E. Coli
          Length = 161

 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 45/194 (23%)

Query: 180 VTYDRTGAEMEAID---KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 236
           +T+     E   +D   KA T R A+AEA V + SE   +I D    KGDV   A+IAGI
Sbjct: 4   LTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGI 63

Query: 237 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVL 296
             AK+T +LIPLCH ++LSKV+VNL+ +   +R+ + +      +TG EME         
Sbjct: 64  QAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEME--------- 114

Query: 297 SKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITD 356
                                            A+  A VAA+T+Y MCKAV KD+VI  
Sbjct: 115 ---------------------------------ALTAASVAALTIYAMCKAVQKDMVIGP 141

Query: 357 VRLMEKTGGVRGDY 370
           VRL+ K+GG  GD+
Sbjct: 142 VRLLAKSGGKSGDF 155



 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 75/118 (63%)

Query: 78  SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
           ++LTH+   G  +MVDV  KA T R A+AEA V + SE   +I D    KGDV   A+IA
Sbjct: 2   AQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIA 61

Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKA 195
           GI  AK+T +LIPLCH ++LSKV+VNL+ +   +R+ + +      +TG EMEA+  A
Sbjct: 62  GIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAA 119


>pdb|2EEY|A Chain A, Structure Of Gk0241 Protein From Geobacillus Kaustophilus
          Length = 162

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 99/200 (49%), Gaps = 46/200 (23%)

Query: 177 SSVVTYDRTG-AEMEAI-DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 234
           SS   ++  G A+M  I  K  T R A A+ +V ++ EI   +  N I+KGDVL +AQ+A
Sbjct: 2   SSFTHFNEQGRAKMVDITHKEDTVRVAVAQTSVTVSREIYEKMTSNAIEKGDVLAVAQVA 61

Query: 235 GIMGAKKTHELIPLCHSIVLSKVDVNLRL--DDVTDRIVVTSSVVTYDRTGAEMEAFVGA 292
           G+M AKKT +LIP+CH ++L  VD+      D    ++V+T++V T   TG EME     
Sbjct: 62  GVMAAKKTADLIPMCHPLMLKGVDIAFAWENDGEAHKLVITATVKTKGSTGVEME----- 116

Query: 293 MIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDI 352
                                                A+  A V A+TVYDMCKA+ K +
Sbjct: 117 -------------------------------------ALTAASVCALTVYDMCKALDKGM 139

Query: 353 VITDVRLMEKTGGVRGDYVR 372
           VI    L+EKTGG  G Y R
Sbjct: 140 VIGPTYLVEKTGGKSGHYRR 159



 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 78  SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
           S  TH  + G   MVD+ HK  T R A A+ +V ++ EI   +  N I+KGDVL +AQ+A
Sbjct: 2   SSFTHFNEQGRAKMVDITHKEDTVRVAVAQTSVTVSREIYEKMTSNAIEKGDVLAVAQVA 61

Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRL--DDVTDRIVVTSSVVTYDRTGAEMEAIDKA 195
           G+M AKKT +LIP+CH ++L  VD+      D    ++V+T++V T   TG EMEA+  A
Sbjct: 62  GVMAAKKTADLIPMCHPLMLKGVDIAFAWENDGEAHKLVITATVKTKGSTGVEMEALTAA 121


>pdb|2IDE|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|B Chain B, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|C Chain C, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|D Chain D, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|E Chain E, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|F Chain F, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|G Chain G, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|H Chain H, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|I Chain I, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|J Chain J, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|K Chain K, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IDE|L Chain L, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|2IIH|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8 (H32
           Form)
 pdb|3JQJ|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|B Chain B, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|C Chain C, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|D Chain D, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|E Chain E, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|F Chain F, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|G Chain G, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|H Chain H, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|I Chain I, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|J Chain J, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|K Chain K, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQJ|L Chain L, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8
 pdb|3JQK|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
           Protein C (Ttha1789) From Thermus Theromophilus Hb8 (H32
           Form)
 pdb|3JQM|A Chain A, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|B Chain B, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|C Chain C, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|D Chain D, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|E Chain E, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|F Chain F, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|G Chain G, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|H Chain H, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
 pdb|3JQM|I Chain I, Binding Of 5'-Gtp To Molybdenum Cofactor Biosynthesis
           Protein Moac From Thermus Theromophilus Hb8
          Length = 157

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 42/180 (23%)

Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
           +K  T RTA AEA V +  E  + +    + KGD L +AQ+AGI+ AKKT +LIPLCH +
Sbjct: 18  EKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHPL 77

Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
            L+ V+V + L     R+ + ++V T   TG EM                          
Sbjct: 78  PLTGVEVRVELLKAEKRVRIEATVKTKAETGVEM-------------------------- 111

Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
                           EA+    VAA+TVYDM KA SK +VI+ VRL+ K GG  G++ R
Sbjct: 112 ----------------EAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRR 155



 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 80  LTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 139
           LTH  D G   MVDV  K  T RTA AEA V +  E  + +    + KGD L +AQ+AGI
Sbjct: 3   LTHFQD-GRPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGI 61

Query: 140 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
           + AKKT +LIPLCH + L+ V+V + L     R+ + ++V T   TG EMEA+
Sbjct: 62  LAAKKTADLIPLCHPLPLTGVEVRVELLKAEKRVRIEATVKTKAETGVEMEAM 114


>pdb|2EKN|A Chain A, Structure Of Ph1811 Protein From Pyrococcus Horikoshii
 pdb|2EKN|B Chain B, Structure Of Ph1811 Protein From Pyrococcus Horikoshii
 pdb|2EKN|C Chain C, Structure Of Ph1811 Protein From Pyrococcus Horikoshii
          Length = 159

 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 3/113 (2%)

Query: 80  LTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 139
           LTHV + G V MV++G+K +  R A A+  + +  E   LI++  I+KG+VL  AQIAGI
Sbjct: 5   LTHVDEKG-VKMVEIGYKDVVFRKAVAKGRIKLKPETVKLIKEGKIEKGNVLATAQIAGI 63

Query: 140 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
           +  K+T ELIPLCH I ++ VD+     +  D I VT  V  Y +TG EMEA+
Sbjct: 64  LAVKRTPELIPLCHPIPITGVDITFDFGE--DYIEVTCEVRAYYKTGVEMEAL 114



 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 3/115 (2%)

Query: 183 DRTGAEMEAID-KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKK 241
           D  G +M  I  K +  R A A+  + +  E   LI++  I+KG+VL  AQIAGI+  K+
Sbjct: 9   DEKGVKMVEIGYKDVVFRKAVAKGRIKLKPETVKLIKEGKIEKGNVLATAQIAGILAVKR 68

Query: 242 THELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVL 296
           T ELIPLCH I ++ VD+     +  D I VT  V  Y +TG EMEA  G  + L
Sbjct: 69  TPELIPLCHPIPITGVDITFDFGE--DYIEVTCEVRAYYKTGVEMEALTGVTVAL 121


>pdb|2OHD|A Chain A, Crystal Structure Of Hypothetical Molybdenum Cofactor
           Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|B Chain B, Crystal Structure Of Hypothetical Molybdenum Cofactor
           Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|C Chain C, Crystal Structure Of Hypothetical Molybdenum Cofactor
           Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|D Chain D, Crystal Structure Of Hypothetical Molybdenum Cofactor
           Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|E Chain E, Crystal Structure Of Hypothetical Molybdenum Cofactor
           Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|F Chain F, Crystal Structure Of Hypothetical Molybdenum Cofactor
           Biosynthesis Protein C From Sulfolobus Tokodaii
          Length = 151

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 90  NMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELI 149
            +VD+  K I  R A  E  + +  E    I++  ++KGDV+T+A+ AGI+ AKKT ELI
Sbjct: 5   KIVDISSKDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKTAGILAAKKTPELI 64

Query: 150 PLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
           P+CH I L  VDV +++++   R++  S+V  + +TG EMEA+
Sbjct: 65  PMCHPIPLEFVDVEIKIEEEGLRVI--STVKAHYKTGVEMEAL 105



 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 2/103 (1%)

Query: 194 KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIV 253
           K I  R A  E  + +  E    I++  ++KGDV+T+A+ AGI+ AKKT ELIP+CH I 
Sbjct: 12  KDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKTAGILAAKKTPELIPMCHPIP 71

Query: 254 LSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVL 296
           L  VDV +++++   R++  S+V  + +TG EMEA     + L
Sbjct: 72  LEFVDVEIKIEEEGLRVI--STVKAHYKTGVEMEALTATSVAL 112


>pdb|2YBX|A Chain A, Crystal Structure Of Human
           Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
 pdb|2YBX|B Chain B, Crystal Structure Of Human
           Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
          Length = 394

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 21/120 (17%)

Query: 133 IAQIAGIMGAKKTHELIPLCHSIVLSKVDVN---LRLDDVTDRIVVTSSVVT-------- 181
           +A++  I+  KK H+ I  CH I L    +    L +D V   ++VT +V +        
Sbjct: 141 VAEMHNIL--KKYHQYIVECHGITLLPQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYRK 198

Query: 182 YDRTGAEM--EAIDKAITKRTAKAEATVLINSEITTLIRDNLIK------KGDVLTIAQI 233
           YD  G+ +  EA DK   K     +    IN      I DN  K      K DV  +AQ+
Sbjct: 199 YDLKGSTVAREASDKEKAKELPTLKDNDFINEGQKIYIDDNNKKVFLEKLKKDVEFLAQL 258


>pdb|3KQX|A Chain A, Structure Of A Protease 1
 pdb|3KQX|B Chain B, Structure Of A Protease 1
 pdb|3KQX|C Chain C, Structure Of A Protease 1
 pdb|3KQX|D Chain D, Structure Of A Protease 1
 pdb|3KQX|E Chain E, Structure Of A Protease 1
 pdb|3KQX|F Chain F, Structure Of A Protease 1
 pdb|3KQX|G Chain G, Structure Of A Protease 1
 pdb|3KQX|H Chain H, Structure Of A Protease 1
 pdb|3KQX|I Chain I, Structure Of A Protease 1
 pdb|3KQX|J Chain J, Structure Of A Protease 1
 pdb|3KQX|K Chain K, Structure Of A Protease 1
 pdb|3KQX|L Chain L, Structure Of A Protease 1
 pdb|3KQZ|A Chain A, Structure Of A Protease 2
 pdb|3KQZ|B Chain B, Structure Of A Protease 2
 pdb|3KQZ|C Chain C, Structure Of A Protease 2
 pdb|3KQZ|D Chain D, Structure Of A Protease 2
 pdb|3KQZ|E Chain E, Structure Of A Protease 2
 pdb|3KQZ|F Chain F, Structure Of A Protease 2
 pdb|3KQZ|G Chain G, Structure Of A Protease 2
 pdb|3KQZ|H Chain H, Structure Of A Protease 2
 pdb|3KQZ|I Chain I, Structure Of A Protease 2
 pdb|3KQZ|J Chain J, Structure Of A Protease 2
 pdb|3KQZ|K Chain K, Structure Of A Protease 2
 pdb|3KQZ|L Chain L, Structure Of A Protease 2
 pdb|3KR4|A Chain A, Structure Of A Protease 3
 pdb|3KR4|B Chain B, Structure Of A Protease 3
 pdb|3KR4|C Chain C, Structure Of A Protease 3
 pdb|3KR4|D Chain D, Structure Of A Protease 3
 pdb|3KR4|E Chain E, Structure Of A Protease 3
 pdb|3KR4|F Chain F, Structure Of A Protease 3
 pdb|3KR4|G Chain G, Structure Of A Protease 3
 pdb|3KR4|H Chain H, Structure Of A Protease 3
 pdb|3KR4|I Chain I, Structure Of A Protease 3
 pdb|3KR4|J Chain J, Structure Of A Protease 3
 pdb|3KR4|K Chain K, Structure Of A Protease 3
 pdb|3KR4|L Chain L, Structure Of A Protease 3
 pdb|3KR5|A Chain A, Structure Of A Protease 4
 pdb|3KR5|B Chain B, Structure Of A Protease 4
 pdb|3KR5|C Chain C, Structure Of A Protease 4
 pdb|3KR5|D Chain D, Structure Of A Protease 4
 pdb|3KR5|E Chain E, Structure Of A Protease 4
 pdb|3KR5|F Chain F, Structure Of A Protease 4
 pdb|3KR5|G Chain G, Structure Of A Protease 4
 pdb|3KR5|H Chain H, Structure Of A Protease 4
 pdb|3KR5|I Chain I, Structure Of A Protease 4
 pdb|3KR5|J Chain J, Structure Of A Protease 4
 pdb|3KR5|K Chain K, Structure Of A Protease 4
 pdb|3KR5|L Chain L, Structure Of A Protease 4
 pdb|3T8W|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|B Chain B, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|C Chain C, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|D Chain D, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|E Chain E, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|F Chain F, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|G Chain G, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|H Chain H, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|I Chain I, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|J Chain J, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|K Chain K, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
 pdb|3T8W|L Chain L, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
          Length = 528

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 265 DVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDV 301
           DV  +I +    +T+D  G  ++A  G+MI L K D+
Sbjct: 281 DVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDM 317


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,115,775
Number of Sequences: 62578
Number of extensions: 334227
Number of successful extensions: 919
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 24
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)