Query psy632
Match_columns 373
No_of_seqs 196 out of 1865
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 23:26:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09364 moaC molybdenum cofac 100.0 1.2E-67 2.7E-72 471.1 19.5 158 77-373 1-158 (159)
2 COG0315 MoaC Molybdenum cofact 100.0 9.8E-67 2.1E-71 462.5 17.6 156 78-373 2-157 (157)
3 PLN02375 molybderin biosynthes 100.0 1.6E-65 3.4E-70 483.1 19.9 157 77-372 113-269 (270)
4 TIGR00581 moaC molybdenum cofa 100.0 8.9E-65 1.9E-69 448.0 18.8 147 80-367 1-147 (147)
5 PRK14499 molybdenum cofactor b 100.0 2.4E-62 5.3E-67 474.3 19.4 156 79-373 2-157 (308)
6 cd01420 MoaC_PE MoaC family, p 100.0 1.7E-61 3.7E-66 424.3 17.5 140 91-369 1-140 (140)
7 PRK14500 putative bifunctional 100.0 1E-60 2.2E-65 467.6 19.0 156 79-371 1-158 (346)
8 PRK03604 moaC bifunctional mol 100.0 2E-60 4.3E-65 461.5 19.3 151 81-372 1-151 (312)
9 PRK12343 putative molybdenum c 100.0 2.9E-60 6.4E-65 420.5 18.2 143 82-366 1-150 (151)
10 cd00528 MoaC MoaC family. Memb 100.0 2E-59 4.4E-64 409.5 17.4 136 91-365 1-136 (136)
11 PF01967 MoaC: MoaC family; I 100.0 1.7E-59 3.6E-64 410.1 15.5 136 91-365 1-136 (136)
12 cd01419 MoaC_A MoaC family, ar 100.0 9.8E-58 2.1E-62 400.7 16.7 134 91-365 1-141 (141)
13 PF01967 MoaC: MoaC family; I 99.9 1.4E-27 3.1E-32 209.3 7.9 74 190-263 3-76 (136)
14 cd00528 MoaC MoaC family. Memb 99.9 2.3E-27 5E-32 208.0 9.1 74 190-263 3-76 (136)
15 COG0315 MoaC Molybdenum cofact 99.9 3.3E-27 7.2E-32 210.4 9.6 81 183-263 9-90 (157)
16 cd01420 MoaC_PE MoaC family, p 99.9 3.1E-27 6.7E-32 208.1 8.9 74 190-263 3-76 (140)
17 TIGR00581 moaC molybdenum cofa 99.9 3.5E-27 7.6E-32 209.2 8.8 78 185-262 8-86 (147)
18 cd01419 MoaC_A MoaC family, ar 99.9 5.8E-27 1.3E-31 206.5 8.5 73 190-262 3-75 (141)
19 PRK09364 moaC molybdenum cofac 99.9 7.5E-27 1.6E-31 209.3 8.6 79 185-263 11-90 (159)
20 PRK12343 putative molybdenum c 99.9 1.3E-26 2.9E-31 206.1 9.0 78 185-262 5-83 (151)
21 PLN02375 molybderin biosynthes 99.9 1.6E-25 3.4E-30 212.3 9.0 115 117-263 87-202 (270)
22 PRK14499 molybdenum cofactor b 99.9 7.5E-25 1.6E-29 213.2 8.9 79 185-263 10-89 (308)
23 PRK03604 moaC bifunctional mol 99.9 2.6E-24 5.6E-29 209.6 9.0 78 185-262 7-85 (312)
24 PRK14500 putative bifunctional 99.9 5.9E-24 1.3E-28 208.9 8.7 80 185-264 9-91 (346)
25 KOG2876|consensus 99.7 4.5E-19 9.6E-24 171.1 -9.7 242 78-372 16-280 (323)
26 KOG2876|consensus 98.1 8.8E-08 1.9E-12 93.6 -6.8 107 77-191 132-238 (323)
27 PF12374 Dmrt1: Double-sex mab 22.2 34 0.00074 27.7 0.4 19 151-169 4-22 (71)
28 PF09241 Herp-Cyclin: Herpesvi 21.8 17 0.00036 31.1 -1.5 16 239-254 2-17 (106)
29 PRK09444 pntB pyridine nucleot 21.2 48 0.001 35.5 1.3 22 329-351 245-266 (462)
30 PF15391 DUF4614: Domain of un 21.1 47 0.001 31.4 1.1 20 327-346 115-134 (181)
No 1
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=100.00 E-value=1.2e-67 Score=471.10 Aligned_cols=158 Identities=53% Similarity=0.794 Sum_probs=150.8
Q ss_pred CCCCCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccC
Q psy632 77 YSKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIV 156 (373)
Q Consensus 77 ~~~lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlp 156 (373)
|+.|||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||+|||||||||++|||||||||
T Consensus 1 ~~~ltHl~~~g~~~MVDVs~K~~t~R~A~A~g~I~l~~e~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~LIPlCHpi~ 80 (159)
T PRK09364 1 MSQLTHINEQGRAKMVDVSDKAETVRTAVAEGSVRMSPETLALIRDGTAKKGDVLATARIAGIMAAKRTSDLIPLCHPLM 80 (159)
T ss_pred CCCCccCCCCCCEEEEECCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHh
Q psy632 157 LSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 236 (373)
Q Consensus 157 Lt~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgI 236 (373)
|++|+|+|+++++
T Consensus 81 i~~v~v~~~~~~~------------------------------------------------------------------- 93 (159)
T PRK09364 81 LTGVDVDFEWDPE------------------------------------------------------------------- 93 (159)
T ss_pred cceEEEEEEEcCC-------------------------------------------------------------------
Confidence 9999999998532
Q ss_pred hhhhcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEE
Q psy632 237 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTS 316 (373)
Q Consensus 237 maaK~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~ 316 (373)
..+|.|+|
T Consensus 94 ------------------------------------------------------------------------~~~i~i~~ 101 (159)
T PRK09364 94 ------------------------------------------------------------------------LPGVRITA 101 (159)
T ss_pred ------------------------------------------------------------------------CCeEEEEE
Confidence 24699999
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccceecC
Q psy632 317 SVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVRG 373 (373)
Q Consensus 317 tV~~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~~~ 373 (373)
+|++.++|||||||||||++||||||||||++||+|+|++|||++|+|||||+|.|+
T Consensus 102 ~v~~~~~TGVEMEALtavsva~LTiyDM~Kavdk~~~I~~i~L~~K~gGksg~~~~~ 158 (159)
T PRK09364 102 TVKTTGKTGVEMEALTAVSVAALTIYDMCKAVDKGMVIGDVRLLEKSGGKSGDFKRE 158 (159)
T ss_pred EEEEccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCEEeeEEEEEecCCcCCccccC
Confidence 999999999999999999999999999999999999999999999999999999874
No 2
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=9.8e-67 Score=462.48 Aligned_cols=156 Identities=51% Similarity=0.785 Sum_probs=149.3
Q ss_pred CCCCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCc
Q psy632 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVL 157 (373)
Q Consensus 78 ~~lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpL 157 (373)
..|||+|++|+++|||||+|+.|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++||||||||||
T Consensus 2 ~~lth~~~~g~a~MVDVs~K~~t~R~AvA~g~i~m~~et~~~I~~~~~~KGdVl~tAriAgimaaKkT~elIPlCHpi~l 81 (157)
T COG0315 2 GVLTHLDEQGEARMVDVSEKAETLREAVAEGFIRMKPETLAAIKEGKVKKGDVLATARIAGIMAAKRTSELIPLCHPLPL 81 (157)
T ss_pred CceEEEcCCCceeEEEccCCcceeEEEEEEEEEEcCHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhhhhhhCccCCCCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhh
Q psy632 158 SKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIM 237 (373)
Q Consensus 158 t~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgIm 237 (373)
++|+|+|+++++
T Consensus 82 t~Vdv~~~~~~~-------------------------------------------------------------------- 93 (157)
T COG0315 82 TKVDVDFEVDED-------------------------------------------------------------------- 93 (157)
T ss_pred cceEEEEEECCC--------------------------------------------------------------------
Confidence 999999988431
Q ss_pred hhhcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEE
Q psy632 238 GAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSS 317 (373)
Q Consensus 238 aaK~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~t 317 (373)
+.|+++|+
T Consensus 94 ------------------------------------------------------------------------~~v~i~~~ 101 (157)
T COG0315 94 ------------------------------------------------------------------------DGVEITAT 101 (157)
T ss_pred ------------------------------------------------------------------------CcEEEEEE
Confidence 36999999
Q ss_pred EEEccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccceecC
Q psy632 318 VVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVRG 373 (373)
Q Consensus 318 V~~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~~~ 373 (373)
|++.||||||||||||||+||||||||||++||||+|++|||++|+|||||+|.|.
T Consensus 102 vkt~gkTGVEMEALtavsvalLTIyDM~Ka~eKd~~I~~vrl~eK~ggksg~~~~~ 157 (157)
T COG0315 102 VKTTGKTGVEMEALTAVSVALLTIYDMCKAVEKDMVIEGVRLLEKSGGKSGDFKRE 157 (157)
T ss_pred EEECCCCCccHHHHHHHHHHHHHHHHHHHHhcCCcEEeeeEEEEecCCcCCcEecC
Confidence 99999999999999999999999999999999999999999999999999999874
No 3
>PLN02375 molybderin biosynthesis protein CNX3
Probab=100.00 E-value=1.6e-65 Score=483.06 Aligned_cols=157 Identities=50% Similarity=0.717 Sum_probs=150.9
Q ss_pred CCCCCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccC
Q psy632 77 YSKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIV 156 (373)
Q Consensus 77 ~~~lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlp 156 (373)
|+.|||||++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++|||||||||
T Consensus 113 m~~LTHld~~G~a~MVDVS~K~~T~R~A~A~G~I~ls~et~~~I~~g~~~KGDVLavArIAGImAAKkTseLIPLCHPLp 192 (270)
T PLN02375 113 MSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIA 192 (270)
T ss_pred CCCCCcCCCCCCEEEEECCCCCCCceEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHhhccccccccCCCcc
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHh
Q psy632 157 LSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 236 (373)
Q Consensus 157 Lt~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgI 236 (373)
|++|+|+|+++++
T Consensus 193 Lt~V~Vdfei~~~------------------------------------------------------------------- 205 (270)
T PLN02375 193 LTHVRVDLRLNPE------------------------------------------------------------------- 205 (270)
T ss_pred cceeEEEEEEcCC-------------------------------------------------------------------
Confidence 9999999998543
Q ss_pred hhhhcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEE
Q psy632 237 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTS 316 (373)
Q Consensus 237 maaK~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~ 316 (373)
...|.|+|
T Consensus 206 ------------------------------------------------------------------------~~~I~I~a 213 (270)
T PLN02375 206 ------------------------------------------------------------------------DFSVDIEG 213 (270)
T ss_pred ------------------------------------------------------------------------CCeEEEEE
Confidence 25699999
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccceec
Q psy632 317 SVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372 (373)
Q Consensus 317 tV~~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~~ 372 (373)
+|+|.++|||||||||||++||||||||||++||+|+|++|||++|+|||||+|.|
T Consensus 214 tVkt~gkTGVEMEALTaVSVAaLTIYDMcKAvDK~MvI~~IrLl~K~GGKSG~~~r 269 (270)
T PLN02375 214 EASCTGKTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGKSGSWSR 269 (270)
T ss_pred EEEEccCcchHHHHHHHHHHHHHHHHHHHHhcCCCCEEeeeEEEEecCCcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999987
No 4
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=100.00 E-value=8.9e-65 Score=447.97 Aligned_cols=147 Identities=51% Similarity=0.796 Sum_probs=142.2
Q ss_pred CCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcce
Q psy632 80 LTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSK 159 (373)
Q Consensus 80 lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~ 159 (373)
|||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||+|||||||||++||||||||||++
T Consensus 1 ltH~~~~g~~~MVDVs~K~~t~R~A~A~g~I~l~~~~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~lIPlCHpi~l~~ 80 (147)
T TIGR00581 1 LTHINEQGAARMVDISAKAETVREARASGFVRMKPETVKMISEGRVPKGDVIATARIAGIMAAKRTGDLIPLCHPLPLSK 80 (147)
T ss_pred CCcCCCCCCEEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcCCCCCccceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhh
Q psy632 160 VDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGA 239 (373)
Q Consensus 160 V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaa 239 (373)
|+|+|++++
T Consensus 81 v~v~~~~~~----------------------------------------------------------------------- 89 (147)
T TIGR00581 81 VEVELTVRE----------------------------------------------------------------------- 89 (147)
T ss_pred EEEEEEEcC-----------------------------------------------------------------------
Confidence 999998842
Q ss_pred hcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEE
Q psy632 240 KKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVV 319 (373)
Q Consensus 240 K~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~ 319 (373)
++|+|+|+|+
T Consensus 90 ----------------------------------------------------------------------~~i~v~~~v~ 99 (147)
T TIGR00581 90 ----------------------------------------------------------------------DRVEIRATVR 99 (147)
T ss_pred ----------------------------------------------------------------------CEEEEEEEEE
Confidence 3699999999
Q ss_pred EccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcc
Q psy632 320 TYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVR 367 (373)
Q Consensus 320 ~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGks 367 (373)
+.++|||||||||||++||||||||||++||+|+|++|||++|+||||
T Consensus 100 t~~~TGVEMEALtavsva~LTiyDM~Kavdk~m~I~~i~l~~K~gGks 147 (147)
T TIGR00581 100 TTGRTGVEMEALTAVSVAALTVYDMCKAVDKDMVIGPVRLLEKSGGKS 147 (147)
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHHHHhhCCCcEEeeeEEEEeeCCCC
Confidence 999999999999999999999999999999999999999999999997
No 5
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=100.00 E-value=2.4e-62 Score=474.34 Aligned_cols=156 Identities=49% Similarity=0.718 Sum_probs=149.6
Q ss_pred CCCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcc
Q psy632 79 KLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLS 158 (373)
Q Consensus 79 ~lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt 158 (373)
+|||||++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++||||||||||+
T Consensus 2 ~~th~~~~g~~~mvdv~~K~~t~R~A~A~g~i~~~~~~~~~i~~~~~~KGdvl~~a~~agi~aaK~t~~liPlchp~~i~ 81 (308)
T PRK14499 2 EFTHFNKDGLPQMVDVSSKEPTFRVAVASGRIYVGKEVIEAIEERLLPKGDVFSVAKIAAIMAAKKTSELIPLCHNIFLS 81 (308)
T ss_pred CCCcCCCCCCEEEEECCCCCCceeEEEEEEEEEeCHHHHHHHHhCCCCCccHHHHHHHHHHHHhhhcccccccCCCcccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhh
Q psy632 159 KVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMG 238 (373)
Q Consensus 159 ~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgIma 238 (373)
+|+|+|+++++
T Consensus 82 ~v~v~~~~~~~--------------------------------------------------------------------- 92 (308)
T PRK14499 82 GVDVSYEINRE--------------------------------------------------------------------- 92 (308)
T ss_pred eeEEEEEECCC---------------------------------------------------------------------
Confidence 99999998543
Q ss_pred hhcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEE
Q psy632 239 AKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSV 318 (373)
Q Consensus 239 aK~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV 318 (373)
...|.|+|+|
T Consensus 93 ----------------------------------------------------------------------~~~v~~~~~v 102 (308)
T PRK14499 93 ----------------------------------------------------------------------EGYIEAVSEV 102 (308)
T ss_pred ----------------------------------------------------------------------CCeEEEEEEE
Confidence 2469999999
Q ss_pred EEccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccceecC
Q psy632 319 VTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVRG 373 (373)
Q Consensus 319 ~~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~~~ 373 (373)
+|.++|||||||||||++||||||||||++||+|+|++|||++|+|||||+|.|.
T Consensus 103 ~~~~~tGvEmEAlt~~~~a~ltiyDm~K~~~~~~~i~~i~l~~k~ggksg~~~~~ 157 (308)
T PRK14499 103 KTEAKTGAEMEAITAVSIFLETIYDMCKAVKKDMVITDVRLIEKSGGKSGHYIFE 157 (308)
T ss_pred EEcCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCEEeeEEEEEecCCcCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999873
No 6
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=100.00 E-value=1.7e-61 Score=424.28 Aligned_cols=140 Identities=54% Similarity=0.826 Sum_probs=134.7
Q ss_pred EecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcceeEEEEEEcCCC
Q psy632 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVT 170 (373)
Q Consensus 91 MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V~V~f~~~~~~ 170 (373)
|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|+++++
T Consensus 1 MVDVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaK~T~~LIPlCHpi~l~~v~v~~~~~~~- 79 (140)
T cd01420 1 MVDVSDKAVTERTAVAEGRVRMSPETLDLITEGQLPKGDVLAVARIAGIMAAKRTSELIPLCHPLPLTGVDVDFELDEE- 79 (140)
T ss_pred CcccCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhcccccCCCCcccEEEEEEEEcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcc
Q psy632 171 DRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCH 250 (373)
Q Consensus 171 ~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCH 250 (373)
T Consensus 80 -------------------------------------------------------------------------------- 79 (140)
T cd01420 80 -------------------------------------------------------------------------------- 79 (140)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEEEccCCCchhhH
Q psy632 251 SIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 330 (373)
Q Consensus 251 pi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~~~~kTGVEMEA 330 (373)
..+|+|+|+|++.++|||||||
T Consensus 80 ----------------------------------------------------------~~~i~i~~~v~~~~kTGVEMEA 101 (140)
T cd01420 80 ----------------------------------------------------------TSGVRIEATVRTTGRTGVEMEA 101 (140)
T ss_pred ----------------------------------------------------------CCEEEEEEEEEEccCCchHHHH
Confidence 2469999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccc
Q psy632 331 IVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGD 369 (373)
Q Consensus 331 LtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~ 369 (373)
||||++||||||||||++||+|+|++|||++|+|||||+
T Consensus 102 Ltavsva~LTiyDM~Kavdk~m~I~~i~L~~K~GGksg~ 140 (140)
T cd01420 102 LTAVSVAALTIYDMCKAVDKGMVIGGIRLLEKSGGKSGD 140 (140)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEeeEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999985
No 7
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=100.00 E-value=1e-60 Score=467.57 Aligned_cols=156 Identities=36% Similarity=0.596 Sum_probs=147.3
Q ss_pred CCCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcC--CCCCCcHhHHHHHHHHhhhhhcCCccccccccC
Q psy632 79 KLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDN--LIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIV 156 (373)
Q Consensus 79 ~lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~--~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlp 156 (373)
.|||+|++|+++|||||+|+.|.|+|+|+|+|+|+++++++|+++ .++|||||++||+|||||||||++|||||||||
T Consensus 1 ~~~h~~~~~~~~mvdv~~k~~t~r~a~a~~~i~~~~~~~~~~~~~~~~~~kg~v~~~a~~agi~a~k~t~~liplch~~~ 80 (346)
T PRK14500 1 MFTHLNENQQPRMVDISQKVVSDRRAVAQAIVQLPPAIKDYVTGQDIFLKKGPVIQTAIIAGTMAVKRTADLIPFCHTLP 80 (346)
T ss_pred CCCcCCCCCCeEEEECCCCCCcceEEEEEEEEEECHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhhhhhhccccCccc
Confidence 389999999999999999999999999999999999999999998 579999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHh
Q psy632 157 LSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 236 (373)
Q Consensus 157 Lt~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgI 236 (373)
|++|+|+|+++++.
T Consensus 81 l~~~~~~~~~~~~~------------------------------------------------------------------ 94 (346)
T PRK14500 81 IHGCKFDINIVYQK------------------------------------------------------------------ 94 (346)
T ss_pred cceeEEEEEECCcc------------------------------------------------------------------
Confidence 99999999986431
Q ss_pred hhhhcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEE
Q psy632 237 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTS 316 (373)
Q Consensus 237 maaK~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~ 316 (373)
....|.|+|
T Consensus 95 -----------------------------------------------------------------------~~~~~~~~~ 103 (346)
T PRK14500 95 -----------------------------------------------------------------------RDLEIFLQC 103 (346)
T ss_pred -----------------------------------------------------------------------CcceEEEEE
Confidence 013699999
Q ss_pred EEEEccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCccccee
Q psy632 317 SVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYV 371 (373)
Q Consensus 317 tV~~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~ 371 (373)
+|++.++||||||||||||+||||||||||++||+|+|++|||++|+|||||+|+
T Consensus 104 ~~~~~~~tgvemealt~~~~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~ 158 (346)
T PRK14500 104 AVKTNYKTGVEMEALCGVAVAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQ 158 (346)
T ss_pred EEEECCCCcHHHHHHHHHHHHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999995
No 8
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=100.00 E-value=2e-60 Score=461.50 Aligned_cols=151 Identities=50% Similarity=0.733 Sum_probs=145.9
Q ss_pred CccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCccee
Q psy632 81 THVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKV 160 (373)
Q Consensus 81 THld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V 160 (373)
||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++||||||||||++|
T Consensus 1 ~h~~~~g~~~mvdv~~k~~t~r~A~a~~~i~~~~~~~~~i~~~~~~kg~vl~~a~~agi~aaK~t~~liPlchp~~l~~~ 80 (312)
T PRK03604 1 THLDEEGRVRMVDVSGKPGTLRTARASGIIVTSPETIELLRQGDLPKGDVLTTAKIAGIQAAKRTSELIPLCHPLPLSWV 80 (312)
T ss_pred CccCCCCCEEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcccccccCCCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhh
Q psy632 161 DVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAK 240 (373)
Q Consensus 161 ~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK 240 (373)
+|+|++++
T Consensus 81 ~v~~~~~~------------------------------------------------------------------------ 88 (312)
T PRK03604 81 DVEFEIED------------------------------------------------------------------------ 88 (312)
T ss_pred EEEEEEcC------------------------------------------------------------------------
Confidence 99998742
Q ss_pred cccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEEE
Q psy632 241 KTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVT 320 (373)
Q Consensus 241 ~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~~ 320 (373)
+.|+|+|+|++
T Consensus 89 ---------------------------------------------------------------------~~~~~~~~v~~ 99 (312)
T PRK03604 89 ---------------------------------------------------------------------DRIRIEATVKT 99 (312)
T ss_pred ---------------------------------------------------------------------CeEEEEEEEEE
Confidence 36899999999
Q ss_pred ccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccceec
Q psy632 321 YDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372 (373)
Q Consensus 321 ~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~~ 372 (373)
.++|||||||||||++||||||||||++||+|+|++|||++|+|||||+|.+
T Consensus 100 ~~~tgvemeAlt~~~~a~ltiydm~k~~~~~~~i~~~~l~~k~ggksg~~~~ 151 (312)
T PRK03604 100 IGKTGVEMEALTAVSVAALTIYDMLKPVDKALEIGGIRLLEKTGGKSGHKRR 151 (312)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeEEEEEeeCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999975
No 9
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=100.00 E-value=2.9e-60 Score=420.49 Aligned_cols=143 Identities=43% Similarity=0.647 Sum_probs=137.6
Q ss_pred ccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcceeE
Q psy632 82 HVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVD 161 (373)
Q Consensus 82 Hld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V~ 161 (373)
|+|++| ++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||+|||||||||++||||||||||++|+
T Consensus 1 H~d~~g-~~MVDVs~K~~t~R~A~A~g~i~~~~~~~~~i~~~~~~KGdvl~~AriAgi~aAK~T~~LIPlCHPl~l~~v~ 79 (151)
T PRK12343 1 HVDEDG-VKMVDVSEKEDVLRIAVAEGFIKLKPETIEAIREGEVEKGNVLATARVAGILAVKKTPELIPMCHPIPITGVD 79 (151)
T ss_pred CCCCCC-CEEEEcCCCCCceEEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhccCCCCccceEEE
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhc
Q psy632 162 VNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKK 241 (373)
Q Consensus 162 V~f~~~~~~~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~ 241 (373)
|+|++++
T Consensus 80 v~~~~~~------------------------------------------------------------------------- 86 (151)
T PRK12343 80 VDFEVGE------------------------------------------------------------------------- 86 (151)
T ss_pred EEEEEcC-------------------------------------------------------------------------
Confidence 9998742
Q ss_pred ccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEEEc
Q psy632 242 THELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVTY 321 (373)
Q Consensus 242 T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~~~ 321 (373)
+.|+|+|+|++.
T Consensus 87 --------------------------------------------------------------------~~v~v~~~v~~~ 98 (151)
T PRK12343 87 --------------------------------------------------------------------DGIEARVTVKTT 98 (151)
T ss_pred --------------------------------------------------------------------CEEEEEEEEEEc
Confidence 358999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHhhhccCCCc-------eEEeeEEEEEeeCCc
Q psy632 322 DRTGAEMEAIVGAMVAAVTVYDMCKAVSKD-------IVITDVRLMEKTGGV 366 (373)
Q Consensus 322 ~kTGVEMEALtgvsvAlLTIyDM~Kavdk~-------mvI~~irl~~K~GGk 366 (373)
++||||||||||||+||||||||||++||+ |+|++|||++|+||.
T Consensus 99 ~~TGVEMEALtavsvA~LTiYDM~Kavdk~~~gqyp~~~I~~i~L~~K~g~~ 150 (151)
T PRK12343 99 YKTGVEMEALTGVSVALLTIWDMVKAAEKDEDGQYPETRIENIRVVEKIKEE 150 (151)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhcccccCCCCceEEEEEEEEEeeCCC
Confidence 999999999999999999999999999998 999999999999985
No 10
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=100.00 E-value=2e-59 Score=409.47 Aligned_cols=136 Identities=54% Similarity=0.851 Sum_probs=130.9
Q ss_pred EecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcceeEEEEEEcCCC
Q psy632 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVT 170 (373)
Q Consensus 91 MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V~V~f~~~~~~ 170 (373)
|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|+++++
T Consensus 1 MVDVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~~AriAgI~aaK~T~~LIPlCHpl~l~~v~v~~~~~~~- 79 (136)
T cd00528 1 MVDVSDKAVTERTAVAEGRVRLSPETLDLIREGQLPKGDVLAVARIAGIMAAKRTSELIPLCHPLPLTGVDVDFELDED- 79 (136)
T ss_pred CcccCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcccccccCCCCcceEEEEEEEEcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcc
Q psy632 171 DRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCH 250 (373)
Q Consensus 171 ~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCH 250 (373)
T Consensus 80 -------------------------------------------------------------------------------- 79 (136)
T cd00528 80 -------------------------------------------------------------------------------- 79 (136)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEEEccCCCchhhH
Q psy632 251 SIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 330 (373)
Q Consensus 251 pi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~~~~kTGVEMEA 330 (373)
...|.|+|+|++.++|||||||
T Consensus 80 ----------------------------------------------------------~~~i~i~~~v~~~~~TGVEMEA 101 (136)
T cd00528 80 ----------------------------------------------------------TSGVRIRATVRTTGKTGVEMEA 101 (136)
T ss_pred ----------------------------------------------------------CCEEEEEEEEEEecCCCcHHHH
Confidence 2469999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCC
Q psy632 331 IVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGG 365 (373)
Q Consensus 331 LtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GG 365 (373)
|||||+||||||||||++||+|+|++|||++|+||
T Consensus 102 LtavsvA~LTiyDM~Kavdk~m~I~~i~L~~K~GG 136 (136)
T cd00528 102 LTAVSVAALTIYDMCKAVDKDMVIENIRLLEKSGG 136 (136)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEeeEEEEEecCC
Confidence 99999999999999999999999999999999998
No 11
>PF01967 MoaC: MoaC family; InterPro: IPR002820 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry contains the molybdenum cofactor biosynthesis protein MoaC.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2EKN_B 1EKS_A 1EKR_A 3JQM_D 2IIH_A 3JQJ_I 2IDE_K 3JQK_A 2OHD_B 2EEY_A.
Probab=100.00 E-value=1.7e-59 Score=410.14 Aligned_cols=136 Identities=56% Similarity=0.850 Sum_probs=116.2
Q ss_pred EecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcceeEEEEEEcCCC
Q psy632 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVT 170 (373)
Q Consensus 91 MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V~V~f~~~~~~ 170 (373)
|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++||||||||||++|+|+|+++++
T Consensus 1 MVDVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaKkT~~LIPlCHpi~l~~v~v~~~~~~~- 79 (136)
T PF01967_consen 1 MVDVSDKPVTYRTAIASGRIRLSPETIELIRDGEVPKGDVLAVARIAGIMAAKKTSELIPLCHPIPLTHVDVDFELDED- 79 (136)
T ss_dssp E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTC-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETT-
T ss_pred CccCCCCCCeeEEEEEEEEEEECHHHHHHHHhCCCCCCCHHHhHHHHHHHHhhhhhhhccccccccccEEEEEEEEcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred CeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcc
Q psy632 171 DRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCH 250 (373)
Q Consensus 171 ~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCH 250 (373)
T Consensus 80 -------------------------------------------------------------------------------- 79 (136)
T PF01967_consen 80 -------------------------------------------------------------------------------- 79 (136)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEEEccCCCchhhH
Q psy632 251 SIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 330 (373)
Q Consensus 251 pi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~~~~kTGVEMEA 330 (373)
..+|+|+|+|++.++|||||||
T Consensus 80 ----------------------------------------------------------~~~v~v~~~v~t~~kTGVEMEA 101 (136)
T PF01967_consen 80 ----------------------------------------------------------ESSVEVRATVKTTGKTGVEMEA 101 (136)
T ss_dssp ----------------------------------------------------------ETEEEEEEEEEEEESS--HHHH
T ss_pred ----------------------------------------------------------CcEEEEEEEEEEecCCCccHHH
Confidence 2579999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCC
Q psy632 331 IVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGG 365 (373)
Q Consensus 331 LtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GG 365 (373)
|||||+||||||||||++||+|+|++|||++|+||
T Consensus 102 LtavsvA~LTiyDM~Kavdk~~~I~~i~l~~K~GG 136 (136)
T PF01967_consen 102 LTAVSVAALTIYDMCKAVDKDMVITDIRLLEKSGG 136 (136)
T ss_dssp HHHHHHHHHHHHHHHCCCHST-EEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEeeEEEEEeeCC
Confidence 99999999999999999999999999999999998
No 12
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=100.00 E-value=9.8e-58 Score=400.65 Aligned_cols=134 Identities=43% Similarity=0.667 Sum_probs=129.0
Q ss_pred EecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcceeEEEEEEcCCC
Q psy632 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVT 170 (373)
Q Consensus 91 MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V~V~f~~~~~~ 170 (373)
|||||+|+.|.|+|+|+|+|+|+++++++|++|.++|||||++||+||||||||||+||||||||||++|+|+|++++
T Consensus 1 MVDVs~K~~T~R~A~A~g~I~~~~~t~~~i~~~~~~KGdvL~vAriAgI~aaK~T~~LIPlCHpl~l~~v~v~~~~~~-- 78 (141)
T cd01419 1 MVDISSKEDVAREAVASGFIKLKEETIKAIREGKVEKGNVIATARIAGILAVKKTPELIPMCHPIPITGVDVDFEVEE-- 78 (141)
T ss_pred CcccCCCCCceEEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhccCCCCccceEEEEEEEEcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988742
Q ss_pred CeEEEEEEEEEeccCCcccccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcc
Q psy632 171 DRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCH 250 (373)
Q Consensus 171 ~~i~i~~~V~t~~ktGVeMea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCH 250 (373)
T Consensus 79 -------------------------------------------------------------------------------- 78 (141)
T cd01419 79 -------------------------------------------------------------------------------- 78 (141)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeEEEEEecccccceeeeccceecccccchhhhhhhheeeecccccccccCCCCCeEEEEEEEEEccCCCchhhH
Q psy632 251 SIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 330 (373)
Q Consensus 251 pi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~~tV~~~~kTGVEMEA 330 (373)
+.|.|+|+|++.++|||||||
T Consensus 79 -----------------------------------------------------------~~i~i~~~v~t~~~TGVEMEA 99 (141)
T cd01419 79 -----------------------------------------------------------DGIEVRCTVKTTYKTGVEMEA 99 (141)
T ss_pred -----------------------------------------------------------CEEEEEEEEEEcCCCChhHHH
Confidence 358999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCc-------eEEeeEEEEEeeCC
Q psy632 331 IVGAMVAAVTVYDMCKAVSKD-------IVITDVRLMEKTGG 365 (373)
Q Consensus 331 LtgvsvAlLTIyDM~Kavdk~-------mvI~~irl~~K~GG 365 (373)
|||||+||||||||||++||+ |+|++|||++|+||
T Consensus 100 Ltavsva~LTiYDM~Kavdk~e~g~yp~~~I~~i~l~~K~~g 141 (141)
T cd01419 100 LTGVSVALLTIWDMVKSAEKDEDGQYPETRIENVRVVEKIKG 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCceEEEEEEEEEeeCC
Confidence 999999999999999999998 99999999999998
No 13
>PF01967 MoaC: MoaC family; InterPro: IPR002820 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry contains the molybdenum cofactor biosynthesis protein MoaC.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2EKN_B 1EKS_A 1EKR_A 3JQM_D 2IIH_A 3JQJ_I 2IDE_K 3JQK_A 2OHD_B 2EEY_A.
Probab=99.94 E-value=1.4e-27 Score=209.32 Aligned_cols=74 Identities=54% Similarity=0.810 Sum_probs=62.0
Q ss_pred ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEe
Q psy632 190 EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRL 263 (373)
Q Consensus 190 ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~ 263 (373)
|+.+|++++|+|+|+|+|.++++++++|++|.++|||||++||||||||||||++||||||||||++|+|+|++
T Consensus 3 DVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaKkT~~LIPlCHpi~l~~v~v~~~~ 76 (136)
T PF01967_consen 3 DVSDKPVTYRTAIASGRIRLSPETIELIRDGEVPKGDVLAVARIAGIMAAKKTSELIPLCHPIPLTHVDVDFEL 76 (136)
T ss_dssp --TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTC-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEE
T ss_pred cCCCCCCeeEEEEEEEEEEECHHHHHHHHhCCCCCCCHHHhHHHHHHHHhhhhhhhccccccccccEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999975
No 14
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=99.94 E-value=2.3e-27 Score=208.03 Aligned_cols=74 Identities=54% Similarity=0.829 Sum_probs=72.8
Q ss_pred ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEe
Q psy632 190 EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRL 263 (373)
Q Consensus 190 ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~ 263 (373)
|++.|+++.|+|+|+|+|.++++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|++
T Consensus 3 DVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~~AriAgI~aaK~T~~LIPlCHpl~l~~v~v~~~~ 76 (136)
T cd00528 3 DVSDKAVTERTAVAEGRVRLSPETLDLIREGQLPKGDVLAVARIAGIMAAKRTSELIPLCHPLPLTGVDVDFEL 76 (136)
T ss_pred ccCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcccccccCCCCcceEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999975
No 15
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.94 E-value=3.3e-27 Score=210.41 Aligned_cols=81 Identities=47% Similarity=0.710 Sum_probs=77.7
Q ss_pred ccCCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEE
Q psy632 183 DRTGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNL 261 (373)
Q Consensus 183 ~ktGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~ 261 (373)
+.....| |++.|+.+.|+|+|+|.|.|++|++++|++|.++|||||++||||||||||+|++||||||||||++|+|+|
T Consensus 9 ~~g~a~MVDVs~K~~t~R~AvA~g~i~m~~et~~~I~~~~~~KGdVl~tAriAgimaaKkT~elIPlCHpi~lt~Vdv~~ 88 (157)
T COG0315 9 EQGEARMVDVSEKAETLREAVAEGFIRMKPETLAAIKEGKVKKGDVLATARIAGIMAAKRTSELIPLCHPLPLTKVDVDF 88 (157)
T ss_pred CCCceeEEEccCCcceeEEEEEEEEEEcCHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhhhhhhCccCCCCcccceEEEE
Confidence 3456889 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q psy632 262 RL 263 (373)
Q Consensus 262 ~~ 263 (373)
++
T Consensus 89 ~~ 90 (157)
T COG0315 89 EV 90 (157)
T ss_pred EE
Confidence 75
No 16
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=99.94 E-value=3.1e-27 Score=208.10 Aligned_cols=74 Identities=53% Similarity=0.806 Sum_probs=72.8
Q ss_pred ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEe
Q psy632 190 EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRL 263 (373)
Q Consensus 190 ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~ 263 (373)
|++.|+++.|+|+|+|+|.++++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|++
T Consensus 3 DVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaK~T~~LIPlCHpi~l~~v~v~~~~ 76 (140)
T cd01420 3 DVSDKAVTERTAVAEGRVRMSPETLDLITEGQLPKGDVLAVARIAGIMAAKRTSELIPLCHPLPLTGVDVDFEL 76 (140)
T ss_pred ccCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhcccccCCCCcccEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999975
No 17
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=99.94 E-value=3.5e-27 Score=209.17 Aligned_cols=78 Identities=46% Similarity=0.681 Sum_probs=75.5
Q ss_pred CCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEE
Q psy632 185 TGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLR 262 (373)
Q Consensus 185 tGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~ 262 (373)
..+.| |++.|+++.|+|+|+|+|.++++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|+
T Consensus 8 g~~~MVDVs~K~~t~R~A~A~g~I~l~~~~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~lIPlCHpi~l~~v~v~~~ 86 (147)
T TIGR00581 8 GAARMVDISAKAETVREARASGFVRMKPETVKMISEGRVPKGDVIATARIAGIMAAKRTGDLIPLCHPLPLSKVEVELT 86 (147)
T ss_pred CCEEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcCCCCCccceEEEEEEE
Confidence 34788 9999999999999999999999999999999999999999999999999999999999999999999999985
No 18
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=99.94 E-value=5.8e-27 Score=206.47 Aligned_cols=73 Identities=38% Similarity=0.629 Sum_probs=71.9
Q ss_pred ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEE
Q psy632 190 EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLR 262 (373)
Q Consensus 190 ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~ 262 (373)
|++.|+.|.|+|+|+|+|.++++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|+
T Consensus 3 DVs~K~~T~R~A~A~g~I~~~~~t~~~i~~~~~~KGdvL~vAriAgI~aaK~T~~LIPlCHpl~l~~v~v~~~ 75 (141)
T cd01419 3 DISSKEDVAREAVASGFIKLKEETIKAIREGKVEKGNVIATARIAGILAVKKTPELIPMCHPIPITGVDVDFE 75 (141)
T ss_pred ccCCCCCceEEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhccCCCCccceEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999985
No 19
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=99.94 E-value=7.5e-27 Score=209.29 Aligned_cols=79 Identities=53% Similarity=0.759 Sum_probs=76.2
Q ss_pred CCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEe
Q psy632 185 TGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRL 263 (373)
Q Consensus 185 tGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~ 263 (373)
..+.| |++.|+++.|+|+|+|+|.++++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|++
T Consensus 11 g~~~MVDVs~K~~t~R~A~A~g~I~l~~e~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~LIPlCHpi~i~~v~v~~~~ 90 (159)
T PRK09364 11 GRAKMVDVSDKAETVRTAVAEGSVRMSPETLALIRDGTAKKGDVLATARIAGIMAAKRTSDLIPLCHPLMLTGVDVDFEW 90 (159)
T ss_pred CCEEEEECCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcccCCCCccceEEEEEEE
Confidence 34678 99999999999999999999999999999999999999999999999999999999999999999999999975
No 20
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=99.93 E-value=1.3e-26 Score=206.11 Aligned_cols=78 Identities=40% Similarity=0.657 Sum_probs=75.6
Q ss_pred CCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEE
Q psy632 185 TGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLR 262 (373)
Q Consensus 185 tGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~ 262 (373)
.|+.| |++.|+.|.|+|+|+|+|.++++++++|++|.++|||||++||+|||||||||++||||||||||++|+|+|+
T Consensus 5 ~g~~MVDVs~K~~t~R~A~A~g~i~~~~~~~~~i~~~~~~KGdvl~~AriAgi~aAK~T~~LIPlCHPl~l~~v~v~~~ 83 (151)
T PRK12343 5 DGVKMVDVSEKEDVLRIAVAEGFIKLKPETIEAIREGEVEKGNVLATARVAGILAVKKTPELIPMCHPIPITGVDVDFE 83 (151)
T ss_pred CCCEEEEcCCCCCceEEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhccCCCCccceEEEEEEE
Confidence 34789 9999999999999999999999999999999999999999999999999999999999999999999999985
No 21
>PLN02375 molybderin biosynthesis protein CNX3
Probab=99.92 E-value=1.6e-25 Score=212.35 Aligned_cols=115 Identities=40% Similarity=0.548 Sum_probs=94.5
Q ss_pred HHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccCcceeEEEEEEcCCCCeEEEEEEEEEeccCCccc-ccccCc
Q psy632 117 TTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEM-EAIDKA 195 (373)
Q Consensus 117 ~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlpLt~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeM-ea~dK~ 195 (373)
++.-+.....|.|--++-+. +|-.+..= .|+|++ ....+.| |+..|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~m~------~LTHld---------------------~~G~a~MVDVS~K~ 134 (270)
T PLN02375 87 IEYHKSTHSSKNDSQAIEQY-----AKVASDMS------KLTHVG---------------------IAGEAQMVDVSSKD 134 (270)
T ss_pred hhhhhccccccchHHHHHHH-----HHhhcCCC------CCCcCC---------------------CCCCEEEEECCCCC
Confidence 34444555678887766554 34444431 355554 1233678 999999
Q ss_pred ceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEe
Q psy632 196 ITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRL 263 (373)
Q Consensus 196 ~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~ 263 (373)
.|.|+|+|+|+|.++++++++|++|.++|||||++||||||||||||++||||||||||++|+|+|++
T Consensus 135 ~T~R~A~A~G~I~ls~et~~~I~~g~~~KGDVLavArIAGImAAKkTseLIPLCHPLpLt~V~Vdfei 202 (270)
T PLN02375 135 NSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRL 202 (270)
T ss_pred CCceEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHhhccccccccCCCcccceeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 22
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=99.91 E-value=7.5e-25 Score=213.21 Aligned_cols=79 Identities=44% Similarity=0.663 Sum_probs=76.3
Q ss_pred CCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEe
Q psy632 185 TGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRL 263 (373)
Q Consensus 185 tGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~ 263 (373)
..+.| |++.|++|.|+|+|+|+|.++++++++|++|.++|||||++||||||||||||++||||||||||++|+|+|++
T Consensus 10 g~~~mvdv~~K~~t~R~A~A~g~i~~~~~~~~~i~~~~~~KGdvl~~a~~agi~aaK~t~~liPlchp~~i~~v~v~~~~ 89 (308)
T PRK14499 10 GLPQMVDVSSKEPTFRVAVASGRIYVGKEVIEAIEERLLPKGDVFSVAKIAAIMAAKKTSELIPLCHNIFLSGVDVSYEI 89 (308)
T ss_pred CCEEEEECCCCCCceeEEEEEEEEEeCHHHHHHHHhCCCCCccHHHHHHHHHHHHhhhcccccccCCCcccceeEEEEEE
Confidence 34678 99999999999999999999999999999999999999999999999999999999999999999999999975
No 23
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.90 E-value=2.6e-24 Score=209.63 Aligned_cols=78 Identities=46% Similarity=0.647 Sum_probs=75.6
Q ss_pred CCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEE
Q psy632 185 TGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLR 262 (373)
Q Consensus 185 tGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~ 262 (373)
..+.| |++.|+.|.|+|+|+|+|.++++++++|++|.++|||||++||||||||||||++||||||||||++|+|+|+
T Consensus 7 g~~~mvdv~~k~~t~r~A~a~~~i~~~~~~~~~i~~~~~~kg~vl~~a~~agi~aaK~t~~liPlchp~~l~~~~v~~~ 85 (312)
T PRK03604 7 GRVRMVDVSGKPGTLRTARASGIIVTSPETIELLRQGDLPKGDVLTTAKIAGIQAAKRTSELIPLCHPLPLSWVDVEFE 85 (312)
T ss_pred CCEEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcccccccCCCCCCceEEEEEE
Confidence 44789 9999999999999999999999999999999999999999999999999999999999999999999999985
No 24
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.90 E-value=5.9e-24 Score=208.90 Aligned_cols=80 Identities=30% Similarity=0.551 Sum_probs=76.9
Q ss_pred CCccc-ccccCcceeeEEEEEEEEEeCHHHHHHHHhc--CCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEE
Q psy632 185 TGAEM-EAIDKAITKRTAKAEATVLINSEITTLIRDN--LIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNL 261 (373)
Q Consensus 185 tGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~~~i~~~--~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~ 261 (373)
..+.| |++.|+.|.|+|+|+|+|.++++++++|+++ .++|||||++||||||||||||++||||||||||++|+|+|
T Consensus 9 ~~~~mvdv~~k~~t~r~a~a~~~i~~~~~~~~~~~~~~~~~~kg~v~~~a~~agi~a~k~t~~liplch~~~l~~~~~~~ 88 (346)
T PRK14500 9 QQPRMVDISQKVVSDRRAVAQAIVQLPPAIKDYVTGQDIFLKKGPVIQTAIIAGTMAVKRTADLIPFCHTLPIHGCKFDI 88 (346)
T ss_pred CCeEEEECCCCCCcceEEEEEEEEEECHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhhhhhhccccCccccceeEEEE
Confidence 44788 9999999999999999999999999999999 57999999999999999999999999999999999999999
Q ss_pred Eec
Q psy632 262 RLD 264 (373)
Q Consensus 262 ~~~ 264 (373)
+++
T Consensus 89 ~~~ 91 (346)
T PRK14500 89 NIV 91 (346)
T ss_pred EEC
Confidence 987
No 25
>KOG2876|consensus
Probab=99.66 E-value=4.5e-19 Score=171.07 Aligned_cols=242 Identities=14% Similarity=0.040 Sum_probs=189.3
Q ss_pred CCCCccCCCCCeeEecCCC--CCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhH----------HHHHHHHhhhhhc
Q psy632 78 SKLTHVTDTGSVNMVDVGH--KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLT----------IAQIAGIMGAKKT 145 (373)
Q Consensus 78 ~~lTHld~~G~~~MVDVS~--K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~----------vArIAGImAAKrT 145 (373)
+..+|.|=.++--|++.+- |+-..=-|+++-.....+=..+.+..+.+.+|+.+- ++..+|+-.+|-|
T Consensus 16 slte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~i~~g~~~l~gLks~~IT 95 (323)
T KOG2876|consen 16 SLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVPIVAGLSSLPGLKSIGIT 95 (323)
T ss_pred hhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccchhhhhhcccchhhhcee
Confidence 4578888889999999988 444333344333222223344556677888887664 8999999999999
Q ss_pred C------CccccccccCcceeEEEEEEcCCCCeEEEEEEEEEec----cCCccc-ccccCcceeeEEEEEEEEEeCHHHH
Q psy632 146 H------ELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYD----RTGAEM-EAIDKAITKRTAKAEATVLINSEIT 214 (373)
Q Consensus 146 s------~LIPLCHPlpLt~V~V~f~~~~~~~~i~i~~~V~t~~----ktGVeM-ea~dK~~~~R~A~A~g~i~~~~~~~ 214 (373)
. .++|.||---|+++++.++... +-++..-.+..+ -.+++| ..+.+.+ .|++.+.-......|+.
T Consensus 96 tng~vl~R~lp~lhkaglssiNiSldtl~---~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn~v~~k~~n~~ev~ 171 (323)
T KOG2876|consen 96 TNGLVLARLLPQLHKAGLSSINISLDTLV---RAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVNCVVMKGLNEDEVF 171 (323)
T ss_pred ccchhhhhhhhHHHhhcccchhhhhhhhh---HHHHHHHhhhccHHHHHHHHhHHhhhCCCC-cceeeEEEeccCCCccc
Confidence 9 9999999999999998877421 000000011111 123556 5567777 99999999999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHhhhhhcccccCCCcccccceeeEEEEEecccccceeeeccceecccccchhhhhhhhee
Q psy632 215 TLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMI 294 (373)
Q Consensus 215 ~~i~~~~~~KGdVl~vAriAgImaaK~T~~LIPlCHpi~is~v~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 294 (373)
++..-+.-.|+||.-++.++++.++|+|+.|||+||.+.+.+=..+
T Consensus 172 Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~~~~d---------------------------------- 217 (323)
T KOG2876|consen 172 DFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIVKPWD---------------------------------- 217 (323)
T ss_pred ceeeecCCCCcceEEEEecccCCCcccccccccHHHHHHHHhccCc----------------------------------
Confidence 9999999999999999999999999999999999999988872221
Q ss_pred eecccccccccCCCCCeEEEEEEEEEccCCCchhhHHHHHHHHHHHHHhhhccCCCceEEeeEEEEEeeCCcccceec
Q psy632 295 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~I~v~~tV~~~~kTGVEMEALtgvsvAlLTIyDM~Kavdk~mvI~~irl~~K~GGksg~~~~ 372 (373)
..+.+.-+-.+++|+|++||+.++||++-++.|||||+-.++..+.|.+|..+.+|+||.|.|
T Consensus 218 ---------------~~~~l~~e~s~T~Ka~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDgnlkvcl~G~Se~slR 280 (323)
T KOG2876|consen 218 ---------------FSVRLPDEPSDTAKAYKIDGFQGQVSFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLR 280 (323)
T ss_pred ---------------hhhcCCCCCCccccccccccccceEEeehhhHHHHHhhhhhheEeccCcEEEeecCCccchhh
Confidence 234444456778999999999999999999999999999999999999999999999999876
No 26
>KOG2876|consensus
Probab=98.05 E-value=8.8e-08 Score=93.62 Aligned_cols=107 Identities=11% Similarity=-0.060 Sum_probs=92.1
Q ss_pred CCCCCccCCCCCeeEecCCCCCCcceEEEEEEEEEcCHHHHHHHHcCCCCCCcHhHHHHHHHHhhhhhcCCccccccccC
Q psy632 77 YSKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIV 156 (373)
Q Consensus 77 ~~~lTHld~~G~~~MVDVS~K~~T~R~A~A~g~I~l~~et~~~I~~~~~~KGDVl~vArIAGImAAKrTs~LIPLCHPlp 156 (373)
++..+|.-=-+...|+|++.|.+ .|++.+........++.+++.-+...++||.-++.++++.++|+|+.|||+||.|.
T Consensus 132 ~rr~g~v~V~~~iq~a~~lgy~p-vkvn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~ 210 (323)
T KOG2876|consen 132 TRRKGFVKVWASIQLAIELGYNP-VKVNCVVMKGLNEDEVFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLD 210 (323)
T ss_pred hhhccHHHHHHHHhHHhhhCCCC-cceeeEEEeccCCCcccceeeecCCCCcceEEEEecccCCCcccccccccHHHHHH
Confidence 55667765566788999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCeEEEEEEEEEeccCCccccc
Q psy632 157 LSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191 (373)
Q Consensus 157 Lt~V~V~f~~~~~~~~i~i~~~V~t~~ktGVeMea 191 (373)
|.+=.-+|. +.+.-+.++++|++++|++
T Consensus 211 l~~~~~d~~-------~~l~~e~s~T~Ka~~i~g~ 238 (323)
T KOG2876|consen 211 LIVKPWDFS-------VRLPDEPSDTAKAYKIDGF 238 (323)
T ss_pred HHhccCchh-------hcCCCCCCccccccccccc
Confidence 988433332 3344456788999999987
No 27
>PF12374 Dmrt1: Double-sex mab3 related transcription factor 1; InterPro: IPR022114 This domain family is found in eukaryotes, and is typically between 61 and 73 amino acids in length. The family is found in association with PF00751 from PFAM. This family is a transcription factor involved in sex determination. The proteins in this family contain a zinc finger-like DNA-binding motif, DM domain.
Probab=22.22 E-value=34 Score=27.73 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=15.0
Q ss_pred cccccCcceeEEEEEEcCC
Q psy632 151 LCHSIVLSKVDVNLRLDDV 169 (373)
Q Consensus 151 LCHPlpLt~V~V~f~~~~~ 169 (373)
+|||+||.+-++-++-+..
T Consensus 4 i~~pv~ls~~e~~VKne~~ 22 (71)
T PF12374_consen 4 ICHPVPLSGPEVMVKNENG 22 (71)
T ss_pred ccccccCCCcccccccCCC
Confidence 5999999998887775443
No 28
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=21.76 E-value=17 Score=31.10 Aligned_cols=16 Identities=38% Similarity=0.771 Sum_probs=11.3
Q ss_pred hhcccccCCCcccccc
Q psy632 239 AKKTHELIPLCHSIVL 254 (373)
Q Consensus 239 aK~T~~LIPlCHpi~i 254 (373)
+-.|..|||+||-+.|
T Consensus 2 vl~tdflip~c~alki 17 (106)
T PF09241_consen 2 VLSTDFLIPVCHALKI 17 (106)
T ss_dssp --GGGGHHHHHHHTT-
T ss_pred cchhhhHHHhhhhccC
Confidence 3457899999998765
No 29
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=21.20 E-value=48 Score=35.47 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHhhhccCCCc
Q psy632 329 EAIVGAMVAAVTVYDMCKAVSKD 351 (373)
Q Consensus 329 EALtgvsvAlLTIyDM~Kavdk~ 351 (373)
=||.|.|.+.|| |.|||+..+.
T Consensus 245 GalVGaSG~ILt-~iMCkAMNRS 266 (462)
T PRK09444 245 GALVGSSGAILS-YIMCKAMNRS 266 (462)
T ss_pred chhHhhhHHHHH-HHHHHHhCcc
Confidence 389999988888 9999999886
No 30
>PF15391 DUF4614: Domain of unknown function (DUF4614)
Probab=21.13 E-value=47 Score=31.44 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHhhhc
Q psy632 327 EMEAIVGAMVAAVTVYDMCK 346 (373)
Q Consensus 327 EMEALtgvsvAlLTIyDM~K 346 (373)
-+|||||=+=|+|.+=||+|
T Consensus 115 AiEALTaYSPA~lALnDMLk 134 (181)
T PF15391_consen 115 AIEALTAYSPAVLALNDMLK 134 (181)
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 57999999999999999999
Done!