RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy632
(373 letters)
>gnl|CDD|236483 PRK09364, moaC, molybdenum cofactor biosynthesis protein MoaC;
Provisional.
Length = 159
Score = 179 bits (456), Expect = 1e-55
Identities = 77/181 (42%), Positives = 99/181 (54%), Gaps = 42/181 (23%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
DKA T RTA AE +V ++ E LIRD KKGDVL A+IAGIM AK+T +LIPLCH +
Sbjct: 20 DKAETVRTAVAEGSVRMSPETLALIRDGTAKKGDVLATARIAGIMAAKRTSDLIPLCHPL 79
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
+L+ VDV+ D + +T++V T TG
Sbjct: 80 MLTGVDVDFEWDPELPGVRITATVKT---TG----------------------------- 107
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
+TG EMEA+ VAA+T+YDMCKAV K +VI DVRL+EK+GG GD+ R
Sbjct: 108 ----------KTGVEMEALTAVSVAALTIYDMCKAVDKGMVIGDVRLLEKSGGKSGDFKR 157
Query: 373 G 373
Sbjct: 158 E 158
Score = 153 bits (388), Expect = 2e-45
Identities = 58/114 (50%), Positives = 76/114 (66%)
Query: 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
S+LTH+ + G MVDV KA T RTA AE +V ++ E LIRD KKGDVL A+IA
Sbjct: 2 SQLTHINEQGRAKMVDVSDKAETVRTAVAEGSVRMSPETLALIRDGTAKKGDVLATARIA 61
Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
GIM AK+T +LIPLCH ++L+ VDV+ D + +T++V T +TG EMEA
Sbjct: 62 GIMAAKRTSDLIPLCHPLMLTGVDVDFEWDPELPGVRITATVKTTGKTGVEMEA 115
>gnl|CDD|238708 cd01420, MoaC_PE, MoaC family, prokaryotic and eukaryotic. Members
of this family are involved in molybdenum cofactor
(Moco) biosynthesis, an essential cofactor of a diverse
group of redox enzymes. MoaC, a small hexameric protein,
converts, together with MoaA, a guanosine derivative to
the precursor Z by inserting the carbon-8 of the purine
between the 2' and 3' ribose carbon atoms, which is the
first of three phases of Moco biosynthesis.
Length = 140
Score = 168 bits (428), Expect = 1e-51
Identities = 72/177 (40%), Positives = 96/177 (54%), Gaps = 42/177 (23%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
DKA+T+RTA AE V ++ E LI + + KGDVL +A+IAGIM AK+T ELIPLCH
Sbjct: 6 DKAVTERTAVAEGRVRMSPETLDLITEGQLPKGDVLAVARIAGIMAAKRTSELIPLCHP- 64
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
+ L+ VDV+ LD+ T +
Sbjct: 65 -----------------------------------------LPLTGVDVDFELDEETSGV 83
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGD 369
+ ++V T RTG EMEA+ VAA+T+YDMCKAV K +VI +RL+EK+GG GD
Sbjct: 84 RIEATVRTTGRTGVEMEALTAVSVAALTIYDMCKAVDKGMVIGGIRLLEKSGGKSGD 140
Score = 139 bits (352), Expect = 2e-40
Identities = 53/101 (52%), Positives = 70/101 (69%)
Query: 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIP 150
MVDV KA+T+RTA AE V ++ E LI + + KGDVL +A+IAGIM AK+T ELIP
Sbjct: 1 MVDVSDKAVTERTAVAEGRVRMSPETLDLITEGQLPKGDVLAVARIAGIMAAKRTSELIP 60
Query: 151 LCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
LCH + L+ VDV+ LD+ T + + ++V T RTG EMEA
Sbjct: 61 LCHPLPLTGVDVDFELDEETSGVRIEATVRTTGRTGVEMEA 101
>gnl|CDD|223392 COG0315, MoaC, Molybdenum cofactor biosynthesis enzyme [Coenzyme
metabolism].
Length = 157
Score = 167 bits (424), Expect = 8e-51
Identities = 71/180 (39%), Positives = 96/180 (53%), Gaps = 43/180 (23%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
+KA T R A AE + + E I++ +KKGDVL A+IAGIM AK+T ELIPLCH +
Sbjct: 20 EKAETLREAVAEGFIRMKPETLAAIKEGKVKKGDVLATARIAGIMAAKRTSELIPLCHPL 79
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
L+KVDV+ +D+ D +
Sbjct: 80 PLTKVDVDFEVDE-------------------------------------------DDGV 96
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
+T++V T +TG EMEA+ VA +T+YDMCKAV KD+VI VRL+EK+GG GD+ R
Sbjct: 97 EITATVKTTGKTGVEMEALTAVSVALLTIYDMCKAVEKDMVIEGVRLLEKSGGKSGDFKR 156
Score = 143 bits (364), Expect = 5e-42
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
LTH+ + G MVDV KA T R A AE + + E I++ +KKGDVL A+IA
Sbjct: 2 GVLTHLDEQGEARMVDVSEKAETLREAVAEGFIRMKPETLAAIKEGKVKKGDVLATARIA 61
Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
GIM AK+T ELIPLCH + L+KVDV+ +D+ D + +T++V T +TG EMEA+
Sbjct: 62 GIMAAKRTSELIPLCHPLPLTKVDVDFEVDE-DDGVEITATVKTTGKTGVEMEAL 115
>gnl|CDD|238293 cd00528, MoaC, MoaC family. Members of this family are involved in
molybdenum cofactor (Moco) biosynthesis, an essential
cofactor of a diverse group of redox enzymes. MoaC, a
small hexameric protein, converts, together with MoaA, a
guanosine derivative to the precursor Z by inserting the
carbon-8 of the purine between the 2' and 3' ribose
carbon atoms, which is the first of three phases of Moco
biosynthesis.
Length = 136
Score = 163 bits (416), Expect = 6e-50
Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 42/173 (24%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
DKA+T+RTA AE V ++ E LIR+ + KGDVL +A+IAGIM AK+T ELIPLCH
Sbjct: 6 DKAVTERTAVAEGRVRLSPETLDLIREGQLPKGDVLAVARIAGIMAAKRTSELIPLCHP- 64
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
+ L+ VDV+ LD+ T +
Sbjct: 65 -----------------------------------------LPLTGVDVDFELDEDTSGV 83
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGG 365
+ ++V T +TG EMEA+ VAA+T+YDMCKAV KD+VI ++RL+EK+GG
Sbjct: 84 RIRATVRTTGKTGVEMEALTAVSVAALTIYDMCKAVDKDMVIENIRLLEKSGG 136
Score = 138 bits (350), Expect = 3e-40
Identities = 53/102 (51%), Positives = 72/102 (70%)
Query: 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIP 150
MVDV KA+T+RTA AE V ++ E LIR+ + KGDVL +A+IAGIM AK+T ELIP
Sbjct: 1 MVDVSDKAVTERTAVAEGRVRLSPETLDLIREGQLPKGDVLAVARIAGIMAAKRTSELIP 60
Query: 151 LCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
LCH + L+ VDV+ LD+ T + + ++V T +TG EMEA+
Sbjct: 61 LCHPLPLTGVDVDFELDEDTSGVRIRATVRTTGKTGVEMEAL 102
>gnl|CDD|202068 pfam01967, MoaC, MoaC family. Members of this family are involved
in molybdenum cofactor biosynthesis. However their
molecular function is not known.
Length = 136
Score = 153 bits (388), Expect = 8e-46
Identities = 70/173 (40%), Positives = 94/173 (54%), Gaps = 42/173 (24%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
+K +T+RTA AE V + E LI + I KGDVL A+IAGIM AK+T ELIPLCH
Sbjct: 6 EKPVTERTAVAEGRVRLKPETLDLITEGKIPKGDVLATARIAGIMAAKRTSELIPLCHP- 64
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
+ L+ VDV+L ++ +RI
Sbjct: 65 -----------------------------------------LPLTGVDVDLDPEEDYNRI 83
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGG 365
+T++V T +TG EMEA+ VAA+T+YDMCKAV KD+VI +RL+EK+GG
Sbjct: 84 KITATVRTTGKTGVEMEALTAVSVAALTIYDMCKAVDKDMVIEGIRLLEKSGG 136
Score = 128 bits (325), Expect = 1e-36
Identities = 53/101 (52%), Positives = 69/101 (68%)
Query: 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIP 150
MVDV K +T+RTA AE V + E LI + I KGDVL A+IAGIM AK+T ELIP
Sbjct: 1 MVDVSEKPVTERTAVAEGRVRLKPETLDLITEGKIPKGDVLATARIAGIMAAKRTSELIP 60
Query: 151 LCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
LCH + L+ VDV+L ++ +RI +T++V T +TG EMEA
Sbjct: 61 LCHPLPLTGVDVDLDPEEDYNRIKITATVRTTGKTGVEMEA 101
>gnl|CDD|235138 PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis
protein MoaC/MogA; Provisional.
Length = 312
Score = 139 bits (352), Expect = 2e-38
Identities = 66/176 (37%), Positives = 87/176 (49%), Gaps = 44/176 (25%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
K T RTA+A ++ + E L+R + KGDVLT A+IAGI AK+T ELIPLCH +
Sbjct: 16 GKPGTLRTARASGIIVTSPETIELLRQGDLPKGDVLTTAKIAGIQAAKRTSELIPLCHPL 75
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
LS VDV ++D DRI
Sbjct: 76 PLSWVDVEFEIED--------------------------------------------DRI 91
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRG 368
+ ++V T +TG EMEA+ VAA+T+YDM K V K + I +RL+EKTGG G
Sbjct: 92 RIEATVKTIGKTGVEMEALTAVSVAALTIYDMLKPVDKALEIGGIRLLEKTGGKSG 147
Score = 129 bits (327), Expect = 8e-35
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 81 THVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIM 140
TH+ + G V MVDV K T RTA+A ++ + E L+R + KGDVLT A+IAGI
Sbjct: 1 THLDEEGRVRMVDVSGKPGTLRTARASGIIVTSPETIELLRQGDLPKGDVLTTAKIAGIQ 60
Query: 141 GAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
AK+T ELIPLCH + LS VDV ++D DRI + ++V T +TG EMEA
Sbjct: 61 AAKRTSELIPLCHPLPLSWVDVEFEIED--DRIRIEATVKTIGKTGVEMEA 109
>gnl|CDD|129670 TIGR00581, moaC, molybdenum cofactor biosynthesis protein MoaC.
MoaC catalyzes an early step in molybdenum cofactor
biosynthesis in E. coli. The Arabidopsis homolog Cnx3
complements MoaC deficiency in E. coli (MUID:95197640).
Eukarotic members of this family branch within the
bacterial branch, with the archaeal members as an
apparent outgroup. This protein is absent in a number of
the pathogens with smaller genomes, including
Mycoplasmas, Chlamydias, and spirochetes, but is found
in most other complete genomes to date. The homolog form
Synechocystis sp. is fused to a MobA-homologous region
and is an outlier to all other bacterial forms by both
neighbor-joining and UPGMA analyses. Members of this
family are well-conserved. The seed for this model
excludes both archaeal sequences and the most divergent
bacterial sequences, but still finds all candidate MoaC
sequences easily between trusted and noise cutoffs. We
suggest that sequences branching outside the set that
contains all seed members be regarded only as putative
functional equivalents of MoaC unless and until a member
of the archaeal outgroup is shown to have equivalent
function [Biosynthesis of cofactors, prosthetic groups,
and carriers, Molybdopterin].
Length = 147
Score = 133 bits (337), Expect = 3e-38
Identities = 68/172 (39%), Positives = 90/172 (52%), Gaps = 44/172 (25%)
Query: 194 KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIV 253
KA T R A+A V + E +I + + KGDV+ A+IAGIM AK+T +LIPLCH +
Sbjct: 18 KAETVREARASGFVRMKPETVKMISEGRVPKGDVIATARIAGIMAAKRTGDLIPLCHPLP 77
Query: 254 LSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRIV 313
LSKV+V L + + DR+
Sbjct: 78 LSKVEVELTVRE--------------------------------------------DRVE 93
Query: 314 VTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGG 365
+ ++V T RTG EMEA+ VAA+TVYDMCKAV KD+VI VRL+EK+GG
Sbjct: 94 IRATVRTTGRTGVEMEALTAVSVAALTVYDMCKAVDKDMVIGPVRLLEKSGG 145
Score = 115 bits (291), Expect = 2e-31
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Query: 80 LTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 139
LTH+ + G+ MVD+ KA T R A+A V + E +I + + KGDV+ A+IAGI
Sbjct: 1 LTHINEQGAARMVDISAKAETVREARASGFVRMKPETVKMISEGRVPKGDVIATARIAGI 60
Query: 140 MGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
M AK+T +LIPLCH + LSKV+V L + + DR+ + ++V T RTG EMEA+
Sbjct: 61 MAAKRTGDLIPLCHPLPLSKVEVELTVRE--DRVEIRATVRTTGRTGVEMEAL 111
>gnl|CDD|237733 PRK14499, PRK14499, molybdenum cofactor biosynthesis protein
MoaC/MOSC-domain-containing protein; Provisional.
Length = 308
Score = 137 bits (346), Expect = 1e-37
Identities = 71/180 (39%), Positives = 90/180 (50%), Gaps = 42/180 (23%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
K T R A A + + E+ I + L+ KGDV ++A+IA IM AKKT ELIPLCH+I
Sbjct: 19 SKEPTFRVAVASGRIYVGKEVIEAIEERLLPKGDVFSVAKIAAIMAAKKTSELIPLCHNI 78
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
LS VDV+ ++ I EA
Sbjct: 79 FLSGVDVSYEINREEGYI----------------EAV----------------------- 99
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
S V T +TGAEMEAI + T+YDMCKAV KD+VITDVRL+EK+GG G Y+
Sbjct: 100 ---SEVKTEAKTGAEMEAITAVSIFLETIYDMCKAVKKDMVITDVRLIEKSGGKSGHYIF 156
Score = 114 bits (287), Expect = 3e-29
Identities = 53/119 (44%), Positives = 67/119 (56%)
Query: 79 KLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAG 138
+ TH G MVDV K T R A A + + E+ I + L+ KGDV ++A+IA
Sbjct: 2 EFTHFNKDGLPQMVDVSSKEPTFRVAVASGRIYVGKEVIEAIEERLLPKGDVFSVAKIAA 61
Query: 139 IMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAIT 197
IM AKKT ELIPLCH+I LS VDV+ ++ I S V T +TGAEMEAI
Sbjct: 62 IMAAKKTSELIPLCHNIFLSGVDVSYEINREEGYIEAVSEVKTEAKTGAEMEAITAVSI 120
>gnl|CDD|237067 PRK12343, PRK12343, putative molybdenum cofactor biosynthesis
protein MoaC; Reviewed.
Length = 151
Score = 118 bits (298), Expect = 3e-32
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 82 HVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMG 141
HV + G V MVDV K R A AE + + E IR+ ++KG+VL A++AGI+
Sbjct: 1 HVDEDG-VKMVDVSEKEDVLRIAVAEGFIKLKPETIEAIREGEVEKGNVLATARVAGILA 59
Query: 142 AKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
KKT ELIP+CH I ++ VDV+ + + D I +V T +TG EMEA+
Sbjct: 60 VKKTPELIPMCHPIPITGVDVDFEVGE--DGIEARVTVKTTYKTGVEMEAL 108
Score = 112 bits (283), Expect = 4e-30
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 52/189 (27%)
Query: 183 DRTGAEMEAI-DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKK 241
D G +M + +K R A AE + + E IR+ ++KG+VL A++AGI+ KK
Sbjct: 3 DEDGVKMVDVSEKEDVLRIAVAEGFIKLKPETIEAIREGEVEKGNVLATARVAGILAVKK 62
Query: 242 THELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDV 301
T ELIP+CH I ++ VDV+ + +
Sbjct: 63 TPELIPMCHPIPITGVDVDFEVGE------------------------------------ 86
Query: 302 NLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKD-------IVI 354
D I +V T +TG EMEA+ G VA +T++DM KA KD I
Sbjct: 87 --------DGIEARVTVKTTYKTGVEMEALTGVSVALLTIWDMVKAAEKDEDGQYPETRI 138
Query: 355 TDVRLMEKT 363
++R++EK
Sbjct: 139 ENIRVVEKI 147
>gnl|CDD|238707 cd01419, MoaC_A, MoaC family, archaeal. Members of this family are
involved in molybdenum cofactor (Moco) biosynthesis, an
essential cofactor of a diverse group of redox enzymes.
MoaC, a small hexameric protein, converts, together with
MoaA, a guanosine derivative to the precursor Z by
inserting the carbon-8 of the purine between the 2' and
3' ribose carbon atoms, which is the first of three
phases of Moco biosynthesis.
Length = 141
Score = 111 bits (279), Expect = 9e-30
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIP 150
MVD+ K R A A + + E IR+ ++KG+V+ A+IAGI+ KKT ELIP
Sbjct: 1 MVDISSKEDVAREAVASGFIKLKEETIKAIREGKVEKGNVIATARIAGILAVKKTPELIP 60
Query: 151 LCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
+CH I ++ VDV+ +++ D I V +V T +TG EMEA+
Sbjct: 61 MCHPIPITGVDVDFEVEE--DGIEVRCTVKTTYKTGVEMEAL 100
Score = 109 bits (275), Expect = 4e-29
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 51/177 (28%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
K R A A + + E IR+ ++KG+V+ A+IAGI+ KKT ELIP+CH I
Sbjct: 6 SKEDVAREAVASGFIKLKEETIKAIREGKVEKGNVIATARIAGILAVKKTPELIPMCHPI 65
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
++ VDV+ +++ D I
Sbjct: 66 PITGVDVDFEVEE--------------------------------------------DGI 81
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKD-------IVITDVRLMEK 362
V +V T +TG EMEA+ G VA +T++DM K+ KD I +VR++EK
Sbjct: 82 EVRCTVKTTYKTGVEMEALTGVSVALLTIWDMVKSAEKDEDGQYPETRIENVRVVEK 138
>gnl|CDD|178003 PLN02375, PLN02375, molybderin biosynthesis protein CNX3.
Length = 270
Score = 106 bits (265), Expect = 2e-26
Identities = 76/205 (37%), Positives = 100/205 (48%), Gaps = 45/205 (21%)
Query: 172 RIVVTSSVVTYDRTGAEMEAID---KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVL 228
++ S +T+ E + +D K +KRTA A V++ + L+ N + KGDVL
Sbjct: 108 KVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVL 167
Query: 229 TIAQIAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 288
+A+IAGI GAK+T LIPLCH+I L+ V V+LRL+ E
Sbjct: 168 GVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNP---------------------ED 206
Query: 289 FVGAMIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAV 348
F VD+ +TG EMEA+ VA +TVYDMCKA
Sbjct: 207 F--------SVDIE-------------GEASCTGKTGVEMEAMTAVSVAGLTVYDMCKAA 245
Query: 349 SKDIVITDVRLMEKTGGVRGDYVRG 373
SKDI ITDVRL KTGG G + R
Sbjct: 246 SKDISITDVRLERKTGGKSGSWSRL 270
Score = 92.9 bits (230), Expect = 1e-21
Identities = 53/115 (46%), Positives = 70/115 (60%)
Query: 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
SKLTHV G MVDV K +KRTA A V++ + L+ N + KGDVL +A+IA
Sbjct: 114 SKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIA 173
Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
GI GAK+T LIPLCH+I L+ V V+LRL+ + + +TG EMEA+
Sbjct: 174 GINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAM 228
>gnl|CDD|237734 PRK14500, PRK14500, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MoaC/MobA;
Provisional.
Length = 346
Score = 101 bits (252), Expect = 5e-24
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 42/174 (24%)
Query: 194 KAITKRTAKAEATVLINSEITTLI--RDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHS 251
K ++ R A A+A V + I + +D +KKG V+ A IAG M K+T +LIP CH+
Sbjct: 19 KVVSDRRAVAQAIVQLPPAIKDYVTGQDIFLKKGPVIQTAIIAGTMAVKRTADLIPFCHT 78
Query: 252 IVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDR 311
+ + K D+N+
Sbjct: 79 L------------PIHG----------------------------CKFDINIVYQKRDLE 98
Query: 312 IVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGG 365
I + +V T +TG EMEA+ G VAA+T+YDMCK++S I+I + RL+EK+GG
Sbjct: 99 IFLQCAVKTNYKTGVEMEALCGVAVAALTIYDMCKSISPHIIIKETRLIEKSGG 152
Score = 83.0 bits (205), Expect = 9e-18
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 80 LTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLI--RDNLIKKGDVLTIAQIA 137
TH+ + MVD+ K ++ R A A+A V + I + +D +KKG V+ A IA
Sbjct: 2 FTHLNENQQPRMVDISQKVVSDRRAVAQAIVQLPPAIKDYVTGQDIFLKKGPVIQTAIIA 61
Query: 138 GIMGAKKTHELIPLCHSIVLS--KVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
G M K+T +LIP CH++ + K D+N+ I + +V T +TG EMEA+
Sbjct: 62 GTMAVKRTADLIPFCHTLPIHGCKFDINIVYQKRDLEIFLQCAVKTNYKTGVEMEAL 118
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 31.0 bits (71), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 158 SKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEM-EAIDKAITKRTAKAEA 205
+V V +R+ DVTDR++ + V A +AI+ I K + EA
Sbjct: 99 LRVYVLVRITDVTDRVL---AAVKAGLDPAARYKAIEARIKKLEKECEA 144
>gnl|CDD|237117 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
Length = 1310
Score = 28.7 bits (65), Expect = 6.3
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 30/95 (31%)
Query: 122 DNLIKKGDVLTIAQIAGIMGAK-KTHELIPLCHSIVLSKV-DVNL---------RLDDVT 170
DN+ K +AQ ++GA+ EL +V V L R+D
Sbjct: 966 DNI--KTYGEGLAQALALVGARPVPDEL---------GRVNKVELIPLEELGRPRID--- 1011
Query: 171 DRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEA 205
+VVT S + D +M +D+A+ + A AEA
Sbjct: 1012 --VVVTCSGIFRDLFINQMALLDQAV--KLA-AEA 1041
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 27.8 bits (62), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 182 YDRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIR 218
+ RT A+ EA+D+ + + A+ A VL+ LIR
Sbjct: 91 FPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIR 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.364
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,097,527
Number of extensions: 1758205
Number of successful extensions: 1643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 54
Length of query: 373
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 275
Effective length of database: 6,590,910
Effective search space: 1812500250
Effective search space used: 1812500250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)