RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy632
(373 letters)
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis,
structural genomics; 1.94A {Geobacillus kaustophilus}
Length = 162
Score = 186 bits (474), Expect = 2e-58
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 40/180 (22%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
K T R A A+ +V ++ EI + N I+KGDVL +AQ+AG+M AKKT +LIP+CH +
Sbjct: 20 HKEDTVRVAVAQTSVTVSREIYEKMTSNAIEKGDVLAVAQVAGVMAAKKTADLIPMCHPL 79
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
+L VD+ ++ D ++
Sbjct: 80 MLKGVDIAFAWEN----------------------------------------DGEAHKL 99
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
V+T++V T TG EMEA+ A V A+TVYDMCKA+ K +VI L+EKTGG G Y R
Sbjct: 100 VITATVKTKGSTGVEMEALTAASVCALTVYDMCKALDKGMVIGPTYLVEKTGGKSGHYRR 159
Score = 161 bits (409), Expect = 1e-48
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
S TH + G MVD+ HK T R A A+ +V ++ EI + N I+KGDVL +AQ+A
Sbjct: 2 SSFTHFNEQGRAKMVDITHKEDTVRVAVAQTSVTVSREIYEKMTSNAIEKGDVLAVAQVA 61
Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRL--DDVTDRIVVTSSVVTYDRTGAEMEA 191
G+M AKKT +LIP+CH ++L VD+ D ++V+T++V T TG EMEA
Sbjct: 62 GVMAAKKTADLIPMCHPLMLKGVDIAFAWENDGEAHKLVITATVKTKGSTGVEMEA 117
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, MOCO DE translation;
2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Length = 161
Score = 184 bits (469), Expect = 9e-58
Identities = 69/180 (38%), Positives = 92/180 (51%), Gaps = 42/180 (23%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
KA T R A+AEA V + SE +I D KGDV A+IAGI AK+T +LIPLCH
Sbjct: 20 AKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHP- 78
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
++LSKV+VNL+ + +R+
Sbjct: 79 -----------------------------------------LMLSKVEVNLQAEPEHNRV 97
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
+ + +TG EMEA+ A VAA+T+YDMCKAV KD+VI VRL+ K+GG GD+
Sbjct: 98 RIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKV 157
Score = 165 bits (421), Expect = 1e-50
Identities = 53/114 (46%), Positives = 73/114 (64%)
Query: 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
++LTH+ G +MVDV KA T R A+AEA V + SE +I D KGDV A+IA
Sbjct: 2 AQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIA 61
Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
GI AK+T +LIPLCH ++LSKV+VNL+ + +R+ + + +TG EMEA
Sbjct: 62 GIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEA 115
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, structu genomics,
NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A
3jqk_A 3jqm_A*
Length = 157
Score = 183 bits (468), Expect = 1e-57
Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 42/180 (23%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
+K T RTA AEA V + E + + + KGD L +AQ+AGI+ AKKT +LIPLCH
Sbjct: 18 EKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHP- 76
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
+ L+ V+V + L R+
Sbjct: 77 -----------------------------------------LPLTGVEVRVELLKAEKRV 95
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDYVR 372
+ ++V T TG EMEA+ VAA+TVYDM KA SK +VI+ VRL+ K GG G++ R
Sbjct: 96 RIEATVKTKAETGVEMEAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRR 155
Score = 160 bits (408), Expect = 1e-48
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 79 KLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAG 138
LTH G MVDV K T RTA AEA V + E + + + KGD L +AQ+AG
Sbjct: 2 DLTHF-QDGRPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAG 60
Query: 139 IMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
I+ AKKT +LIPLCH + L+ V+V + L R+ + ++V T TG EMEA
Sbjct: 61 ILAAKKTADLIPLCHPLPLTGVEVRVELLKAEKRVRIEATVKTKAETGVEMEA 113
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural
genomic NPPSFA, national project on protein structural
and function analyses; HET: FLC; 2.05A {Pyrococcus
horikoshii}
Length = 159
Score = 168 bits (428), Expect = 1e-51
Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 52/194 (26%)
Query: 183 DRTGAEMEAI-DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKK 241
D G +M I K + R A A+ + + E LI++ I+KG+VL AQIAGI+ K+
Sbjct: 9 DEKGVKMVEIGYKDVVFRKAVAKGRIKLKPETVKLIKEGKIEKGNVLATAQIAGILAVKR 68
Query: 242 THELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDV 301
T ELIPLCH I ++ VD+ +
Sbjct: 69 TPELIPLCHPIPITGVDITFDFGE------------------------------------ 92
Query: 302 NLRLDDVTDRIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKD-------IVI 354
D I VT V Y +TG EMEA+ G VA + ++DM KAV KD I
Sbjct: 93 --------DYIEVTCEVRAYYKTGVEMEALTGVTVALLAIWDMVKAVEKDEKGQYPYTRI 144
Query: 355 TDVRLMEKTGGVRG 368
+V ++EK
Sbjct: 145 ENVHVVEKVKTHNS 158
Score = 155 bits (393), Expect = 2e-46
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 78 SKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIA 137
LTHV + G V MV++G+K + R A A+ + + E LI++ I+KG+VL AQIA
Sbjct: 3 GGLTHVDEKG-VKMVEIGYKDVVFRKAVAKGRIKLKPETVKLIKEGKIEKGNVLATAQIA 61
Query: 138 GIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
GI+ K+T ELIPLCH I ++ VD+ + D I VT V Y +TG EMEA
Sbjct: 62 GILAVKRTPELIPLCHPIPITGVDITFDFGE--DYIEVTCEVRAYYKTGVEMEA 113
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta,
biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Length = 151
Score = 165 bits (420), Expect = 1e-50
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 51/180 (28%)
Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
K I R A E + + E I++ ++KGDV+T+A+ AGI+ AKKT ELIP+CH I
Sbjct: 11 SKDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKTAGILAAKKTPELIPMCHPI 70
Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
L VDV +++++ + +
Sbjct: 71 PLEFVDVEIKIEE--------------------------------------------EGL 86
Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKD-------IVITDVRLMEKTGG 365
V S+V + +TG EMEA+ VA +T++DM K KD I +R++ K
Sbjct: 87 RVISTVKAHYKTGVEMEALTATSVALLTIWDMVKKYEKDENGQYPYTEIKSIRVINKIKT 146
Score = 147 bits (374), Expect = 1e-43
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 87 GSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTH 146
+VD+ K I R A E + + E I++ ++KGDV+T+A+ AGI+ AKKT
Sbjct: 2 TEAKIVDISSKDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKTAGILAAKKTP 61
Query: 147 ELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEA 191
ELIP+CH I L VDV +++++ + + V S+V + +TG EMEA
Sbjct: 62 ELIPMCHPIPLEFVDVEIKIEE--EGLRVISTVKAHYKTGVEMEA 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 79/256 (30%)
Query: 67 QSPITL-------SGRA----YSKLTHVTDTGSVNMVDVGHKAITKRTAK----AEATVL 111
+P+ L G+ YS + T + K I + + +E +L
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 112 INSEIT---------TLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI------- 155
++ T D L KG + A AG HS+
Sbjct: 1727 SATQFTQPALTLMEKAAFED-LKSKGLIPADATFAG--------------HSLGEYAALA 1771
Query: 156 ----VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAE---MEAIDKAITKRTAKAEATVL 208
V+S + + + V R + V D G M AI+ + EA
Sbjct: 1772 SLADVMSIESL-VEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 209 INSEITTLIRDNLIKKGDVLTIA-------Q--IAGIMGAKKTHELIPLC-----HSIVL 254
+ + + G ++ I Q AG + A T + + I +
Sbjct: 1829 VVERVGK-------RTGWLVEIVNYNVENQQYVAAGDLRALDT--VTNVLNFIKLQKIDI 1879
Query: 255 SKVDVNLRLDDVTDRI 270
++ +L L++V +
Sbjct: 1880 IELQKSLSLEEVEGHL 1895
Score = 37.3 bits (86), Expect = 0.009
Identities = 50/297 (16%), Positives = 84/297 (28%), Gaps = 98/297 (32%)
Query: 87 GS--VNMVDVGH---------KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQ 135
GS M G + + R A I ++ +N + LTI
Sbjct: 1625 GSQEQGM---GMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVN----LTI-H 1675
Query: 136 IAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKA 195
G G + + + VD L+ + + I S+ T+ +E +
Sbjct: 1676 FGGEKGKRIRENYSAMIFE---TIVDGKLKTEKIFKEINEHSTSYTFR---SEKGLLS-- 1727
Query: 196 ITKRTAKAE-ATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVL 254
T + A L+ ++ KG + A AG HS+
Sbjct: 1728 ---ATQFTQPALTLMEKAAFEDLK----SKGLIPADATFAG--------------HSL-- 1764
Query: 255 SKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEME--AFVGAMIVLSKVDVNLRLDDVTDRI 312
G E A V+S + + + V R
Sbjct: 1765 ----------------------------G---EYAALASLADVMSIESL-VEV--VFYRG 1790
Query: 313 VVTSSVVTYDRTGAE---MEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGV 366
+ V D G M AI VAA + + +V R+ ++TG +
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAA----SFSQEALQYVV---ERVGKRTGWL 1840
Score = 36.2 bits (83), Expect = 0.022
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 34/127 (26%)
Query: 63 FLRSQSPITLSGRAYSKLTHVTDTGSVN--MVDVGHKAITKRTAKAEATVLINSEITTLI 120
F R G + G N M+ + + + EA + +
Sbjct: 1787 FYR--------GMTMQVAVPRDELGRSNYGMIAINPGRVAA-SFSQEALQYVVERVGK-- 1835
Query: 121 RDNLIKKGDVLTIA-------Q--IAGIMGAKKTHELIPLC-----HSIVLSKVDVNLRL 166
+ G ++ I Q AG + A T + + I + ++ +L L
Sbjct: 1836 -----RTGWLVEIVNYNVENQQYVAAGDLRALDT--VTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 167 DDVTDRI 173
++V +
Sbjct: 1889 EEVEGHL 1895
Score = 35.4 bits (81), Expect = 0.036
Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 55/173 (31%)
Query: 14 LSTLTVWLGLKKKVGP-ISQTSA-SAQRGTRFNAKPQSNAYPYDHLPNVAPF----LRSQ 67
L L + L K K + Q+ ++R +F SN + LP +PF L
Sbjct: 386 LYGLNLTL-RKAKAPSGLDQSRIPFSERKLKF-----SNRF----LPVASPFHSHLLVPA 435
Query: 68 SPITLSGRAYSKLT--------HV--TDTGSV----------NMVDVGHKAIT------K 101
S + + ++ V T GS +VD I +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD----CIIRLPVKWE 491
Query: 102 RTAKAEATVLI------NSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHEL 148
T + +AT ++ S + L N G V I +AG + +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-VRVI--VAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 6e-04
Identities = 35/285 (12%), Positives = 69/285 (24%), Gaps = 113/285 (39%)
Query: 20 WLGLKKKVGPISQTSA-----SAQRGTRFNAKPQSNAY------PYDHLPNVAPFLRSQS 68
+L K Q S QR +N Y PY L LR
Sbjct: 93 FLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 69 PITLSGRAYSKLTHVTDTGSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKK- 127
+ + G ++ G K T + + ++
Sbjct: 152 NVLIDG----------------VLGSG---------K---TWVALD----VCLSYKVQCK 179
Query: 128 --GDV--LTIAQIAGIMGAKKTHELIP-----LCHSIV-----LSKVDVNLR-------- 165
+ L + + E + L + I S N++
Sbjct: 180 MDFKIFWLN-------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 166 -----------------LDDVTD-----------RIVVTS-------SVVTYDRTGAEME 190
L +V + +I++T+ + T ++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 191 AIDKAITKRTAKAE-ATVLINSEITTLIRDNLIKKGDVLTIAQIA 234
+T K+ L + L R+ + + ++ IA
Sbjct: 293 HHSMTLTPDEVKSLLLKYL-DCRPQDLPRE--VLTTNPRRLSIIA 334
Score = 36.0 bits (82), Expect = 0.022
Identities = 39/382 (10%), Positives = 103/382 (26%), Gaps = 139/382 (36%)
Query: 113 NSEITTLIRDNLIKKGD----------VLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDV 162
+I ++ D + D +L+ +I I+ +K +LSK +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE- 76
Query: 163 NLRLDDVTDRIVVTSSVVTYD--RTGAEMEAIDKAITKRTAKAEATVLINS--------- 211
++ + V + Y + + E ++ R + L N
Sbjct: 77 -----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 212 ---EITTLIRDNLIK------------KG---DVLTIAQIA----------GI----MGA 239
+ +R L++ G + + I +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 240 KKTHELIP-----LCHSIV-----LSKVDVNLR-------------------------LD 264
+ E + L + I S N++ L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 265 DVTD-----------RIVVTS-------SVVTYDRTGAEMEAFVGAMI------VLSKVD 300
+V + +I++T+ + T ++ + +L K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY- 310
Query: 301 VNLRLDDVTDRIVVTS----SVV---------TYDR----TGAEMEAIVGAMVAAVTVYD 343
++ R D+ ++ T+ S++ T+D ++ I+ + + + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 344 MCKAVSKDIVI--TDVRLMEKT 363
+ + + + +
Sbjct: 371 Y-RKMFDRLSVFPPSAHIPTIL 391
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late
protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB:
3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Length = 159
Score = 33.5 bits (76), Expect = 0.057
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMG 141
MV V +K +T K A I + L G T I G++G
Sbjct: 1 MVYVSNKYLTMSEMKVNAQY---------ILNYLSSNG--WTKQAICGMLG 40
Score = 30.4 bits (68), Expect = 0.60
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 217 IRDNLIKKGDVLTIAQIAGIMG 238
I + L G T I G++G
Sbjct: 21 ILNYLSSNG--WTKQAICGMLG 40
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion,
envelope protein; HET: GOL; 1.60A {Human respiratory
syncytial virus} PDB: 2ykd_A
Length = 257
Score = 30.2 bits (67), Expect = 0.93
Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 25/156 (16%)
Query: 201 AKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLC--HSIVLSKV- 257
+K V EI L K + T+ + TH++I LC +IV SK
Sbjct: 101 SKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTL-NPTHDIIALCEFENIVTSKKV 159
Query: 258 -------DVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTD 310
+++R D+ +T++ T A++ + G ++V++ D
Sbjct: 160 IIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTD---------- 209
Query: 311 RIVVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCK 346
Y + ++ +GA + ++Y +
Sbjct: 210 ----NKGAFKYIKPQSQFIVDLGAYLEKESIYYVTT 241
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A
{Bacteriophage phi-29}
Length = 334
Score = 30.2 bits (67), Expect = 1.1
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 91 MVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMG 141
MV V +K +T K A I + L G T I G++G
Sbjct: 1 MVYVSNKYLTMSEMKVNAQY---------ILNYLSSNG--WTKQAICGMLG 40
Score = 27.9 bits (61), Expect = 5.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 217 IRDNLIKKGDVLTIAQIAGIMG 238
I + L G T I G++G
Sbjct: 21 ILNYLSSNG--WTKQAICGMLG 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 46 KPQSNAYPYDHLPNVAPFLRSQSPI 70
K Q++ Y + AP L ++ +
Sbjct: 24 KLQASLKLYA--DDSAPALAIKATM 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.9
Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 36/160 (22%)
Query: 147 ELIPLCHSIVLS-------KVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKR 199
L+ L V+ D+N L V + T+ + + E + KA++
Sbjct: 705 NLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKL---RKELVETSEVRKAVSIE 761
Query: 200 TAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSIVLSKVDV 259
TA E V+ + + I A I + I ++++
Sbjct: 762 TA-LEHKVVNGNSADAAYAQ--------VEIQPRANIQLDFPELKPYKQVKQIAPAELEG 812
Query: 260 NLRLDDVTDRIVVT---------SSVVTYDRTGAEMEAFV 290
L L+ V IVVT S+ RT EMEAF
Sbjct: 813 LLDLERV---IVVTGFAEVGPWGSA-----RTRWEMEAFG 844
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 28.0 bits (63), Expect = 6.6
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 58 PNVAPFLRS-QSPITLSGRAYSKLTHVTDTGSVNMVDVGHKAITKRTA 104
P + S + + +A H+ ++ D G T+R+A
Sbjct: 465 SGPVPLVLSGRDEQAMRAQAGRLADHLAREPRNSLRDTGFTLATRRSA 512
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase
like fold, fatty-acid binding; HET: DAO; 1.90A
{Arabidopsis thaliana}
Length = 205
Score = 27.3 bits (60), Expect = 7.6
Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 172 RIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVL---INSEITTLIRDNLIKKGDVL 228
R+ + + A +++ R K + + S + + I + +
Sbjct: 90 RLQIVYGKLNIRSV---RNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTI 146
Query: 229 TIAQIAG 235
+ + G
Sbjct: 147 DLTKDPG 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.364
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,470,225
Number of extensions: 351851
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 33
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)