RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy632
         (373 letters)



>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C,
           MoaC {Escherichia coli [TaxId: 562]}
          Length = 146

 Score =  128 bits (324), Expect = 5e-37
 Identities = 69/178 (38%), Positives = 92/178 (51%), Gaps = 42/178 (23%)

Query: 193 DKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTHELIPLCHSI 252
            KA T R A+AEA V + SE   +I D    KGDV   A+IAGI  AK+T +LIPLCH  
Sbjct: 10  AKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHP- 68

Query: 253 VLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAFVGAMIVLSKVDVNLRLDDVTDRI 312
                                                    ++LSKV+VNL+ +   +R+
Sbjct: 69  -----------------------------------------LMLSKVEVNLQAEPEHNRV 87

Query: 313 VVTSSVVTYDRTGAEMEAIVGAMVAAVTVYDMCKAVSKDIVITDVRLMEKTGGVRGDY 370
            + +      +TG EMEA+  A VAA+T+YDMCKAV KD+VI  VRL+ K+GG  GD+
Sbjct: 88  RIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDF 145



 Score =  111 bits (278), Expect = 3e-30
 Identities = 50/106 (47%), Positives = 68/106 (64%)

Query: 87  GSVNMVDVGHKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTH 146
           G  +MVDV  KA T R A+AEA V + SE   +I D    KGDV   A+IAGI  AK+T 
Sbjct: 1   GEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARIAGIQAAKRTW 60

Query: 147 ELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAI 192
           +LIPLCH ++LSKV+VNL+ +   +R+ + +      +TG EMEA+
Sbjct: 61  DLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEAL 106


>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 158

 Score = 28.9 bits (64), Expect = 0.62
 Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 97  KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTH 146
           +++T+      + +    +   ++     +K  ++    + G +GA KT 
Sbjct: 2   ESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVY---LNGDLGAGKTT 48



 Score = 28.9 bits (64), Expect = 0.62
 Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 194 KAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKKTH 243
           +++T+      + +    +   ++     +K  ++    + G +GA KT 
Sbjct: 2   ESLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVY---LNGDLGAGKTT 48


>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora
           erythraea [TaxId: 1836]}
          Length = 60

 Score = 26.2 bits (57), Expect = 1.3
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 160 VDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKAITKRTAKAEATVLINSE 212
           VD+  RLD++   +   S+   +D  G  +E++ +    R A A +T  I+ +
Sbjct: 8   VDIGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRADAPSTSAISED 60


>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 26.6 bits (58), Expect = 3.0
 Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 136 IAGIMGAKKTHELIPLCHSIVLSKVDVNLRLDDVTDRIVVTSSVVTYDRTGAEMEAIDKA 195
           I G M + K+ EL+       +++    +       R   +      +   A    + + 
Sbjct: 7   ILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRD 66

Query: 196 ITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGIMGAKK------THELIPLC 249
           + +         +   +    I +      +      +A + G  +         L+PL 
Sbjct: 67  VAQEALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLA 126

Query: 250 HSIV 253
            S+V
Sbjct: 127 ESVV 130


>d1u5tb2 a.4.5.54 (B:490-564) Vacuolar protein sorting-associated
           protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 75

 Score = 24.9 bits (54), Expect = 4.6
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 183 DRTGAEMEAIDKAITKRTAKAEATVLINSEITTLIRDNLIKKGDVLTIAQIAGI 236
           D  G+++  + + ++   +K+  T+ I  E+      N + +GD+L   Q++GI
Sbjct: 16  DNPGSDLLRLTQILSSNNSKSNWTLGILMEVL----QNCVDEGDLLIDKQLSGI 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,239,969
Number of extensions: 54808
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 14
Length of query: 373
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,213,086
Effective search space: 346942596
Effective search space used: 346942596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)