Query psy6322
Match_columns 128
No_of_seqs 117 out of 1091
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:30:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.5E-29 7.5E-34 190.2 12.6 96 1-107 139-234 (240)
2 COG4555 NatA ABC-type Na+ tran 100.0 3.2E-28 6.9E-33 183.7 11.3 101 1-112 136-236 (245)
3 COG1127 Ttg2A ABC-type transpo 99.9 1.7E-27 3.8E-32 183.1 11.5 97 1-109 148-245 (263)
4 COG1135 AbcC ABC-type metal io 99.9 3.4E-27 7.3E-32 186.9 11.9 90 1-101 144-234 (339)
5 COG1131 CcmA ABC-type multidru 99.9 9.3E-27 2E-31 183.9 11.1 88 1-99 139-227 (293)
6 COG1120 FepC ABC-type cobalami 99.9 1E-26 2.2E-31 181.0 10.4 95 1-109 141-236 (258)
7 COG1125 OpuBA ABC-type proline 99.9 1.6E-26 3.5E-31 179.5 11.3 97 1-109 138-235 (309)
8 PRK13537 nodulation ABC transp 99.9 1.5E-26 3.3E-31 183.3 11.2 88 1-99 141-228 (306)
9 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 7.3E-27 1.6E-31 181.3 8.7 95 1-110 142-236 (254)
10 COG1124 DppF ABC-type dipeptid 99.9 3.1E-26 6.7E-31 176.2 11.8 88 1-99 144-232 (252)
11 COG1122 CbiO ABC-type cobalt t 99.9 1.4E-26 3.1E-31 178.3 9.5 88 1-99 141-229 (235)
12 COG0444 DppD ABC-type dipeptid 99.9 4.8E-26 1E-30 180.7 11.7 91 1-102 156-247 (316)
13 PRK13536 nodulation factor exp 99.9 4.4E-26 9.5E-31 183.3 11.3 88 1-99 175-262 (340)
14 TIGR01188 drrA daunorubicin re 99.9 5.5E-26 1.2E-30 179.4 11.4 88 1-99 127-214 (302)
15 TIGR02314 ABC_MetN D-methionin 99.9 1E-25 2.3E-30 181.5 12.1 89 1-100 143-232 (343)
16 COG4175 ProV ABC-type proline/ 99.9 6.1E-26 1.3E-30 180.5 10.4 97 1-108 167-264 (386)
17 COG1117 PstB ABC-type phosphat 99.9 9E-26 1.9E-30 171.6 9.8 95 1-107 152-246 (253)
18 PRK15093 antimicrobial peptide 99.9 2.2E-25 4.8E-30 178.3 12.3 89 1-100 161-250 (330)
19 TIGR01288 nodI ATP-binding ABC 99.9 1.8E-25 3.9E-30 176.5 11.3 88 1-99 138-225 (303)
20 PRK09536 btuD corrinoid ABC tr 99.9 2.1E-25 4.5E-30 183.0 12.0 95 1-109 142-236 (402)
21 cd03296 ABC_CysA_sulfate_impor 99.9 2.9E-25 6.4E-30 169.3 11.9 88 1-99 139-227 (239)
22 cd03261 ABC_Org_Solvent_Resist 99.9 1.8E-25 4E-30 169.9 10.7 87 1-98 139-226 (235)
23 PRK11022 dppD dipeptide transp 99.9 2.7E-25 5.9E-30 177.7 12.2 90 1-101 156-246 (326)
24 PRK11614 livF leucine/isoleuci 99.9 2.8E-25 6.1E-30 169.0 11.4 87 1-98 140-226 (237)
25 PRK11264 putative amino-acid A 99.9 5.9E-25 1.3E-29 168.3 13.0 89 1-100 147-235 (250)
26 PRK09473 oppD oligopeptide tra 99.9 3.4E-25 7.4E-30 177.4 12.2 90 1-101 164-254 (330)
27 PRK13643 cbiO cobalt transport 99.9 3E-25 6.5E-30 174.3 11.5 87 1-98 147-233 (288)
28 cd03219 ABC_Mj1267_LivG_branch 99.9 3.3E-25 7.2E-30 168.2 11.1 87 1-98 146-232 (236)
29 TIGR02770 nickel_nikD nickel i 99.9 5.9E-25 1.3E-29 166.9 12.2 89 1-100 128-217 (230)
30 TIGR01186 proV glycine betaine 99.9 5E-25 1.1E-29 178.8 12.2 89 1-100 132-221 (363)
31 PRK13651 cobalt transporter AT 99.9 3.8E-25 8.2E-30 175.4 11.2 88 1-99 168-255 (305)
32 cd03218 ABC_YhbG The ABC trans 99.9 5.8E-25 1.3E-29 166.4 11.7 87 1-98 136-222 (232)
33 PRK09493 glnQ glutamine ABC tr 99.9 6.6E-25 1.4E-29 167.2 12.0 89 1-100 139-227 (240)
34 PRK13637 cbiO cobalt transport 99.9 4.6E-25 1E-29 173.2 11.5 87 1-98 147-234 (287)
35 PRK15079 oligopeptide ABC tran 99.9 5.7E-25 1.2E-29 176.3 12.1 89 1-100 164-253 (331)
36 cd03256 ABC_PhnC_transporter A 99.9 5.2E-25 1.1E-29 167.4 11.0 86 1-97 147-233 (241)
37 PRK11308 dppF dipeptide transp 99.9 6.7E-25 1.4E-29 175.6 12.2 89 1-100 157-246 (327)
38 PRK11650 ugpC glycerol-3-phosp 99.9 5.5E-25 1.2E-29 177.9 11.7 90 1-101 137-227 (356)
39 TIGR03258 PhnT 2-aminoethylpho 99.9 5.6E-25 1.2E-29 178.3 11.8 89 1-100 140-230 (362)
40 cd03224 ABC_TM1139_LivF_branch 99.9 6.3E-25 1.4E-29 165.1 11.1 86 1-97 135-220 (222)
41 PRK14268 phosphate ABC transpo 99.9 7.8E-25 1.7E-29 168.9 11.7 88 1-100 157-244 (258)
42 PRK10619 histidine/lysine/argi 99.9 9.5E-25 2.1E-29 168.2 12.1 88 1-99 155-242 (257)
43 PRK13641 cbiO cobalt transport 99.9 6.9E-25 1.5E-29 172.0 11.5 87 1-98 148-234 (287)
44 PRK10851 sulfate/thiosulfate t 99.9 7.2E-25 1.6E-29 177.1 11.8 89 1-100 139-228 (353)
45 PRK13634 cbiO cobalt transport 99.9 6.5E-25 1.4E-29 172.5 11.2 88 1-99 148-236 (290)
46 PRK13631 cbiO cobalt transport 99.9 8.2E-25 1.8E-29 174.6 11.5 88 1-99 179-266 (320)
47 COG1123 ATPase components of v 99.9 7.4E-25 1.6E-29 184.1 11.6 90 1-101 157-247 (539)
48 cd03258 ABC_MetN_methionine_tr 99.9 8.8E-25 1.9E-29 165.8 11.0 87 1-98 143-230 (233)
49 cd03260 ABC_PstB_phosphate_tra 99.9 5.7E-25 1.2E-29 166.2 9.9 83 1-95 144-226 (227)
50 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.4E-24 2.9E-29 168.9 12.2 89 1-100 163-252 (269)
51 PRK11432 fbpC ferric transport 99.9 9E-25 1.9E-29 176.4 11.5 90 1-101 139-229 (351)
52 PRK11153 metN DL-methionine tr 99.9 1.2E-24 2.6E-29 174.9 12.2 89 1-100 143-232 (343)
53 PRK13638 cbiO cobalt transport 99.9 1.1E-24 2.3E-29 169.4 11.5 88 1-99 139-226 (271)
54 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.4E-24 3.1E-29 165.2 11.8 98 1-110 135-233 (236)
55 TIGR01187 potA spermidine/putr 99.9 1.1E-24 2.4E-29 173.9 11.6 89 1-100 103-192 (325)
56 TIGR02315 ABC_phnC phosphonate 99.9 9.2E-25 2E-29 166.4 10.7 85 1-96 148-233 (243)
57 COG3638 ABC-type phosphate/pho 99.9 8.8E-25 1.9E-29 167.8 10.6 95 1-110 150-245 (258)
58 PRK14239 phosphate transporter 99.9 1.6E-24 3.4E-29 166.0 12.0 89 1-101 151-239 (252)
59 cd03259 ABC_Carb_Solutes_like 99.9 7.9E-25 1.7E-29 164.0 10.0 80 1-91 133-213 (213)
60 PRK14250 phosphate ABC transpo 99.9 2.2E-24 4.8E-29 164.9 12.6 99 1-111 134-233 (241)
61 PRK14242 phosphate transporter 99.9 1.5E-24 3.2E-29 166.4 11.7 88 1-100 152-239 (253)
62 PRK11300 livG leucine/isoleuci 99.9 1.6E-24 3.5E-29 166.3 11.9 87 1-98 156-243 (255)
63 PRK13647 cbiO cobalt transport 99.9 1.2E-24 2.6E-29 169.7 11.3 85 1-96 141-225 (274)
64 cd03265 ABC_DrrA DrrA is the A 99.9 1.2E-24 2.5E-29 164.0 10.7 85 1-96 134-219 (220)
65 TIGR03522 GldA_ABC_ATP gliding 99.9 9.5E-25 2.1E-29 172.4 10.6 87 1-99 136-222 (301)
66 PRK14245 phosphate ABC transpo 99.9 1.9E-24 4.1E-29 165.8 11.9 88 1-100 149-236 (250)
67 TIGR00972 3a0107s01c2 phosphat 99.9 2.1E-24 4.4E-29 165.3 12.0 87 1-99 147-233 (247)
68 PRK11000 maltose/maltodextrin 99.9 1.4E-24 2.9E-29 176.2 11.5 89 1-100 136-225 (369)
69 TIGR03265 PhnT2 putative 2-ami 99.9 1.4E-24 3E-29 175.5 11.5 90 1-101 137-227 (353)
70 PRK14273 phosphate ABC transpo 99.9 2.1E-24 4.5E-29 165.9 11.8 88 1-100 153-240 (254)
71 COG4598 HisP ABC-type histidin 99.9 2.1E-24 4.5E-29 161.5 11.4 96 1-107 155-250 (256)
72 PRK11231 fecE iron-dicitrate t 99.9 2E-24 4.3E-29 166.3 11.6 87 1-98 141-227 (255)
73 TIGR03415 ABC_choXWV_ATP choli 99.9 1.9E-24 4.2E-29 176.3 12.1 89 1-100 167-256 (382)
74 TIGR02323 CP_lyasePhnK phospho 99.9 3.2E-24 6.9E-29 164.6 12.6 88 1-99 151-239 (253)
75 PRK13646 cbiO cobalt transport 99.9 1.6E-24 3.5E-29 169.9 11.2 88 1-99 148-236 (286)
76 PRK14248 phosphate ABC transpo 99.9 2.2E-24 4.9E-29 167.2 11.8 89 1-101 167-255 (268)
77 PRK11701 phnK phosphonate C-P 99.9 3.1E-24 6.7E-29 165.4 12.4 89 1-100 154-243 (258)
78 PRK13636 cbiO cobalt transport 99.9 1.7E-24 3.7E-29 169.5 11.1 88 1-99 144-232 (283)
79 TIGR01978 sufC FeS assembly AT 99.9 1.6E-24 3.5E-29 164.9 10.6 86 1-97 147-233 (243)
80 PRK10771 thiQ thiamine transpo 99.9 2.7E-24 5.9E-29 163.3 11.8 88 1-99 132-220 (232)
81 TIGR03411 urea_trans_UrtD urea 99.9 2.6E-24 5.6E-29 164.0 11.6 86 1-98 146-231 (242)
82 PRK11831 putative ABC transpor 99.9 2.1E-24 4.6E-29 167.6 11.2 88 1-99 146-234 (269)
83 TIGR01184 ntrCD nitrate transp 99.9 1.1E-24 2.5E-29 165.7 9.4 85 1-96 117-202 (230)
84 PRK13649 cbiO cobalt transport 99.9 2.2E-24 4.8E-29 168.1 11.2 88 1-99 148-235 (280)
85 PRK10744 pstB phosphate transp 99.9 3.3E-24 7.2E-29 165.6 12.1 89 1-101 159-247 (260)
86 cd03226 ABC_cobalt_CbiO_domain 99.9 1.7E-24 3.6E-29 161.6 10.0 77 1-88 129-205 (205)
87 PRK13652 cbiO cobalt transport 99.9 2.2E-24 4.9E-29 168.3 11.2 87 1-98 140-227 (277)
88 PRK15112 antimicrobial peptide 99.9 3.3E-24 7.2E-29 166.4 12.1 89 1-100 152-241 (267)
89 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.1E-24 6.8E-29 163.9 11.7 88 1-99 138-226 (242)
90 TIGR03005 ectoine_ehuA ectoine 99.9 3.8E-24 8.2E-29 164.3 12.2 89 1-100 149-238 (252)
91 PRK09452 potA putrescine/sperm 99.9 2.6E-24 5.5E-29 175.2 11.8 90 1-101 147-237 (375)
92 PRK14270 phosphate ABC transpo 99.9 3.6E-24 7.9E-29 164.3 12.0 88 1-100 150-237 (251)
93 PRK10895 lipopolysaccharide AB 99.9 3.6E-24 7.8E-29 163.3 11.7 87 1-98 140-226 (241)
94 TIGR02769 nickel_nikE nickel i 99.9 3E-24 6.4E-29 166.4 11.3 88 1-99 153-241 (265)
95 PRK13645 cbiO cobalt transport 99.9 2.6E-24 5.6E-29 168.7 11.0 87 1-98 153-240 (289)
96 TIGR03410 urea_trans_UrtE urea 99.9 2.6E-24 5.7E-29 162.8 10.7 85 1-96 134-219 (230)
97 PRK11144 modC molybdate transp 99.9 2.4E-24 5.2E-29 173.7 11.0 90 1-101 131-221 (352)
98 PRK14274 phosphate ABC transpo 99.9 3.7E-24 8E-29 165.1 11.7 88 1-100 158-245 (259)
99 PRK10070 glycine betaine trans 99.9 3.3E-24 7.2E-29 175.9 12.0 89 1-100 167-256 (400)
100 cd03268 ABC_BcrA_bacitracin_re 99.9 2.5E-24 5.4E-29 160.8 10.2 80 1-91 129-208 (208)
101 COG1123 ATPase components of v 99.9 3.1E-24 6.7E-29 180.4 11.9 90 1-101 432-522 (539)
102 PRK09984 phosphonate/organopho 99.9 4.1E-24 8.9E-29 165.1 11.6 99 1-114 155-254 (262)
103 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.2E-24 4.8E-29 162.5 9.9 82 1-93 134-218 (220)
104 PRK10418 nikD nickel transport 99.9 5.5E-24 1.2E-28 163.9 12.2 89 1-100 143-232 (254)
105 TIGR00960 3a0501s02 Type II (G 99.9 1.8E-24 3.9E-29 162.4 9.3 76 1-87 141-216 (216)
106 PRK14256 phosphate ABC transpo 99.9 4.5E-24 9.7E-29 163.9 11.7 89 1-101 151-239 (252)
107 cd03297 ABC_ModC_molybdenum_tr 99.9 2.6E-24 5.7E-29 161.5 10.1 80 1-91 134-214 (214)
108 cd03257 ABC_NikE_OppD_transpor 99.9 2.5E-24 5.5E-29 162.2 10.1 80 1-91 148-228 (228)
109 TIGR02142 modC_ABC molybdenum 99.9 3.3E-24 7.1E-29 172.9 11.3 89 1-100 134-223 (354)
110 TIGR03771 anch_rpt_ABC anchore 99.9 4.2E-24 9.1E-29 161.9 11.1 86 1-98 116-201 (223)
111 PRK14267 phosphate ABC transpo 99.9 6E-24 1.3E-28 163.1 12.1 87 1-99 152-238 (253)
112 PRK14247 phosphate ABC transpo 99.9 5.8E-24 1.2E-28 162.9 12.0 87 1-99 149-235 (250)
113 cd03301 ABC_MalK_N The N-termi 99.9 3.6E-24 7.8E-29 160.3 10.3 80 1-91 133-213 (213)
114 PRK13639 cbiO cobalt transport 99.9 4.8E-24 1E-28 166.3 11.4 87 1-98 140-226 (275)
115 PRK15134 microcin C ABC transp 99.9 5.1E-24 1.1E-28 178.9 12.2 89 1-100 428-517 (529)
116 PRK14240 phosphate transporter 99.9 6.3E-24 1.4E-28 162.7 11.6 87 1-99 149-235 (250)
117 PRK14244 phosphate ABC transpo 99.9 6.4E-24 1.4E-28 162.9 11.7 88 1-100 152-239 (251)
118 PRK11607 potG putrescine trans 99.9 5.2E-24 1.1E-28 173.5 11.6 90 1-101 152-242 (377)
119 PRK14249 phosphate ABC transpo 99.9 8E-24 1.7E-28 162.4 12.1 89 1-101 150-238 (251)
120 PRK10575 iron-hydroxamate tran 99.9 4.7E-24 1E-28 165.3 10.8 87 1-98 150-237 (265)
121 COG1118 CysA ABC-type sulfate/ 99.9 3.8E-24 8.3E-29 169.5 10.3 90 1-101 140-230 (345)
122 cd03266 ABC_NatA_sodium_export 99.9 4.5E-24 9.6E-29 160.3 10.3 80 1-91 139-218 (218)
123 PRK13644 cbiO cobalt transport 99.9 5.2E-24 1.1E-28 166.1 11.0 87 1-99 139-225 (274)
124 PRK13650 cbiO cobalt transport 99.9 5.4E-24 1.2E-28 166.4 11.0 87 1-99 143-230 (279)
125 PRK10261 glutathione transport 99.9 5.5E-24 1.2E-28 182.2 12.0 89 1-100 466-555 (623)
126 TIGR03740 galliderm_ABC gallid 99.9 8.8E-24 1.9E-28 159.5 11.8 94 1-111 127-220 (223)
127 cd03216 ABC_Carb_Monos_I This 99.9 6.5E-24 1.4E-28 154.2 10.6 78 1-89 85-162 (163)
128 PRK09580 sufC cysteine desulfu 99.9 7.2E-24 1.6E-28 161.9 11.3 85 1-96 148-233 (248)
129 COG4152 ABC-type uncharacteriz 99.9 4.3E-24 9.3E-29 165.2 10.1 88 1-99 133-220 (300)
130 PRK14269 phosphate ABC transpo 99.9 8.3E-24 1.8E-28 162.0 11.6 87 1-99 145-231 (246)
131 PRK14272 phosphate ABC transpo 99.9 9.6E-24 2.1E-28 161.7 11.9 88 1-100 151-238 (252)
132 PRK14235 phosphate transporter 99.9 9.2E-24 2E-28 163.9 11.9 87 1-99 166-252 (267)
133 TIGR03873 F420-0_ABC_ATP propo 99.9 6.2E-24 1.3E-28 163.6 10.8 87 1-98 140-226 (256)
134 PRK14251 phosphate ABC transpo 99.9 1.3E-23 2.9E-28 161.0 12.4 87 1-99 150-236 (251)
135 PRK14253 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 161.3 12.0 87 1-99 148-234 (249)
136 PRK14238 phosphate transporter 99.9 1.1E-23 2.5E-28 163.8 12.2 88 1-100 170-257 (271)
137 cd03235 ABC_Metallic_Cations A 99.9 5.1E-24 1.1E-28 159.6 9.8 78 1-90 135-212 (213)
138 cd03298 ABC_ThiQ_thiamine_tran 99.9 6E-24 1.3E-28 159.1 10.1 80 1-91 131-211 (211)
139 PRK11124 artP arginine transpo 99.9 8.2E-24 1.8E-28 161.4 11.0 86 1-97 144-229 (242)
140 cd03263 ABC_subfamily_A The AB 99.9 6.7E-24 1.4E-28 159.5 10.2 84 1-96 136-219 (220)
141 COG3840 ThiQ ABC-type thiamine 99.9 1.3E-23 2.8E-28 156.9 11.5 89 1-100 132-221 (231)
142 cd03269 ABC_putative_ATPase Th 99.9 8.4E-24 1.8E-28 158.2 10.6 80 1-91 131-210 (210)
143 PRK10253 iron-enterobactin tra 99.9 9.6E-24 2.1E-28 163.5 11.3 87 1-98 146-233 (265)
144 PRK14257 phosphate ABC transpo 99.9 1.1E-23 2.3E-28 168.8 11.8 89 1-101 228-316 (329)
145 COG0411 LivG ABC-type branched 99.9 5.1E-24 1.1E-28 164.0 9.6 96 1-110 152-248 (250)
146 PRK03695 vitamin B12-transport 99.9 1.2E-23 2.7E-28 161.7 11.8 87 1-98 129-222 (248)
147 PRK14258 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 162.2 12.2 89 1-100 153-247 (261)
148 PRK14236 phosphate transporter 99.9 1.3E-23 2.8E-28 163.5 11.8 87 1-99 171-257 (272)
149 cd03225 ABC_cobalt_CbiO_domain 99.9 5.4E-24 1.2E-28 159.1 9.2 75 1-86 137-211 (211)
150 cd03252 ABCC_Hemolysin The ABC 99.9 8.3E-24 1.8E-28 160.8 10.4 86 1-99 141-226 (237)
151 PRK14255 phosphate ABC transpo 99.9 1.6E-23 3.5E-28 160.6 12.0 88 1-100 151-238 (252)
152 PRK15134 microcin C ABC transp 99.9 1.1E-23 2.5E-28 176.8 12.1 88 1-99 159-247 (529)
153 COG1137 YhbG ABC-type (unclass 99.9 9.1E-24 2E-28 159.4 10.2 96 1-110 142-237 (243)
154 PRK13548 hmuV hemin importer A 99.9 1.3E-23 2.8E-28 162.4 11.2 87 1-98 137-230 (258)
155 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.1E-23 2.4E-28 160.2 10.6 86 1-99 142-227 (238)
156 CHL00131 ycf16 sulfate ABC tra 99.9 1.1E-23 2.5E-28 161.3 10.7 83 1-94 154-237 (252)
157 PRK14275 phosphate ABC transpo 99.9 2E-23 4.4E-28 163.8 12.3 88 1-100 185-272 (286)
158 PRK14243 phosphate transporter 99.9 1.9E-23 4E-28 162.0 11.9 88 1-100 154-250 (264)
159 PRK14241 phosphate transporter 99.9 1.8E-23 4E-28 161.1 11.8 87 1-99 151-243 (258)
160 PRK13549 xylose transporter AT 99.9 6.2E-24 1.4E-28 177.5 9.9 85 1-96 408-492 (506)
161 cd03264 ABC_drug_resistance_li 99.9 9.5E-24 2.1E-28 157.9 9.9 79 1-91 133-211 (211)
162 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.2E-23 2.5E-28 159.7 10.4 80 1-91 145-224 (224)
163 cd03300 ABC_PotA_N PotA is an 99.9 2.2E-23 4.7E-28 158.5 11.9 88 1-99 133-221 (232)
164 PRK10938 putative molybdenum t 99.9 1.1E-23 2.4E-28 175.2 11.1 87 1-98 138-224 (490)
165 cd03299 ABC_ModC_like Archeal 99.9 2.1E-23 4.5E-28 159.0 11.7 88 1-99 132-220 (235)
166 TIGR02673 FtsE cell division A 99.9 8.3E-24 1.8E-28 158.4 9.2 75 1-86 140-214 (214)
167 PRK15056 manganese/iron transp 99.9 1.6E-23 3.5E-28 162.9 11.1 86 1-98 145-230 (272)
168 PRK14262 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 159.4 12.0 87 1-99 149-235 (250)
169 PRK14265 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 162.7 11.7 88 1-100 164-260 (274)
170 PRK13635 cbiO cobalt transport 99.9 1.6E-23 3.5E-28 163.8 10.9 87 1-99 143-230 (279)
171 PRK13546 teichoic acids export 99.9 3.3E-23 7.2E-28 161.4 12.6 88 1-99 146-233 (264)
172 cd03214 ABC_Iron-Siderophores_ 99.9 1.6E-23 3.6E-28 153.9 10.3 79 1-90 100-179 (180)
173 PRK13633 cobalt transporter AT 99.9 1.4E-23 3E-28 164.0 10.4 87 1-99 147-234 (280)
174 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 9.4E-24 2E-28 158.5 9.1 75 1-87 143-218 (218)
175 PRK14261 phosphate ABC transpo 99.9 2.9E-23 6.2E-28 159.5 11.9 87 1-99 152-238 (253)
176 COG1116 TauB ABC-type nitrate/ 99.9 1.1E-23 2.4E-28 162.5 9.6 77 1-88 133-212 (248)
177 PRK15439 autoinducer 2 ABC tra 99.9 9.8E-24 2.1E-28 176.7 10.0 86 1-97 406-491 (510)
178 TIGR03269 met_CoM_red_A2 methy 99.9 1.5E-23 3.2E-28 175.6 11.1 87 1-98 430-517 (520)
179 cd03251 ABCC_MsbA MsbA is an e 99.9 1.5E-23 3.4E-28 158.8 10.2 86 1-99 141-226 (234)
180 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.4E-23 5.2E-28 155.4 11.0 82 1-93 107-189 (200)
181 cd03215 ABC_Carb_Monos_II This 99.9 1.2E-23 2.6E-28 154.9 9.1 76 1-87 107-182 (182)
182 PRK14271 phosphate ABC transpo 99.9 2.9E-23 6.4E-28 162.1 11.8 88 1-100 166-253 (276)
183 PRK09700 D-allose transporter 99.9 1.4E-23 3E-28 175.4 10.5 86 1-97 148-233 (510)
184 PRK14259 phosphate ABC transpo 99.9 3E-23 6.5E-28 161.4 11.6 88 1-100 157-255 (269)
185 cd03262 ABC_HisP_GlnQ_permease 99.9 1.4E-23 3E-28 156.9 9.2 76 1-87 138-213 (213)
186 cd03292 ABC_FtsE_transporter F 99.9 1.4E-23 3.1E-28 156.9 9.3 76 1-87 139-214 (214)
187 PRK14237 phosphate transporter 99.9 3.5E-23 7.5E-28 160.7 11.8 87 1-99 166-252 (267)
188 PRK11247 ssuB aliphatic sulfon 99.9 2E-23 4.3E-28 162.0 10.3 83 1-94 136-219 (257)
189 PRK11288 araG L-arabinose tran 99.9 1.3E-23 2.8E-28 175.4 10.0 86 1-97 399-484 (501)
190 PRK14266 phosphate ABC transpo 99.9 3.8E-23 8.2E-28 158.4 11.7 88 1-100 149-236 (250)
191 PRK15439 autoinducer 2 ABC tra 99.9 1.9E-23 4.2E-28 174.9 10.9 87 1-98 143-229 (510)
192 PRK10908 cell division protein 99.9 2E-23 4.4E-28 157.4 10.0 78 1-89 140-217 (222)
193 TIGR01277 thiQ thiamine ABC tr 99.9 2.6E-23 5.7E-28 156.1 10.6 81 1-92 131-212 (213)
194 PRK10419 nikE nickel transport 99.9 2.5E-23 5.3E-28 161.7 10.7 87 1-98 154-241 (268)
195 PRK14254 phosphate ABC transpo 99.9 4.2E-23 9.1E-28 162.0 12.1 88 1-100 183-271 (285)
196 PRK10261 glutathione transport 99.9 1.4E-23 3E-28 179.7 10.1 88 1-99 171-259 (623)
197 PRK14252 phosphate ABC transpo 99.9 4.7E-23 1E-27 159.6 12.1 88 1-100 164-251 (265)
198 PRK14260 phosphate ABC transpo 99.9 4.1E-23 8.9E-28 159.4 11.7 88 1-100 153-245 (259)
199 PRK13642 cbiO cobalt transport 99.9 2.9E-23 6.2E-28 162.0 10.9 87 1-99 143-230 (277)
200 PRK14264 phosphate ABC transpo 99.9 4E-23 8.8E-28 163.5 11.7 97 1-108 203-299 (305)
201 PRK14263 phosphate ABC transpo 99.9 5.5E-23 1.2E-27 159.4 12.1 87 1-99 152-246 (261)
202 TIGR00968 3a0106s01 sulfate AB 99.9 5.1E-23 1.1E-27 157.0 11.7 88 1-99 133-221 (237)
203 TIGR03269 met_CoM_red_A2 methy 99.9 2.7E-23 5.8E-28 174.1 11.1 87 1-98 171-258 (520)
204 PRK10982 galactose/methyl gala 99.9 2.3E-23 4.9E-28 173.5 10.6 86 1-97 137-222 (491)
205 PRK13549 xylose transporter AT 99.9 1.9E-23 4E-28 174.7 10.1 86 1-97 146-231 (506)
206 cd03254 ABCC_Glucan_exporter_l 99.9 3.1E-23 6.8E-28 156.7 10.3 85 1-98 142-226 (229)
207 PRK13648 cbiO cobalt transport 99.9 2.8E-23 6.2E-28 161.2 10.3 87 1-99 145-232 (269)
208 cd03213 ABCG_EPDR ABCG transpo 99.9 3.6E-23 7.8E-28 153.9 10.2 80 1-91 114-194 (194)
209 PRK10762 D-ribose transporter 99.9 2.2E-23 4.8E-28 174.0 10.1 86 1-97 144-229 (501)
210 PRK10762 D-ribose transporter 99.9 2.2E-23 4.7E-28 174.1 9.9 85 1-96 398-482 (501)
211 PRK13640 cbiO cobalt transport 99.9 4.3E-23 9.3E-28 161.5 10.9 87 1-99 146-233 (282)
212 cd03230 ABC_DR_subfamily_A Thi 99.9 2.7E-23 5.9E-28 151.8 9.1 76 1-87 98-173 (173)
213 cd03267 ABC_NatA_like Similar 99.9 3.8E-23 8.2E-28 157.8 10.2 80 1-91 156-236 (236)
214 cd03246 ABCC_Protease_Secretio 99.9 2.7E-23 5.8E-28 151.9 9.0 75 1-87 99-173 (173)
215 COG1136 SalX ABC-type antimicr 99.9 4E-23 8.6E-28 158.2 10.2 75 1-87 145-220 (226)
216 COG4172 ABC-type uncharacteriz 99.9 4.8E-23 1E-27 168.4 11.3 90 1-101 429-519 (534)
217 PRK13547 hmuV hemin importer A 99.9 5.6E-23 1.2E-27 160.6 11.1 87 1-98 148-244 (272)
218 TIGR02633 xylG D-xylose ABC tr 99.9 2.8E-23 6E-28 173.1 10.0 85 1-96 144-228 (500)
219 PRK11629 lolD lipoprotein tran 99.9 4.9E-23 1.1E-27 156.5 10.5 80 1-92 148-228 (233)
220 cd03232 ABC_PDR_domain2 The pl 99.9 3.9E-23 8.5E-28 153.4 9.7 80 1-91 111-192 (192)
221 cd03234 ABCG_White The White s 99.9 4.1E-23 8.8E-28 156.3 10.0 80 1-91 146-226 (226)
222 cd03253 ABCC_ATM1_transporter 99.9 4.5E-23 9.7E-28 156.5 10.1 86 1-99 140-225 (236)
223 PRK09544 znuC high-affinity zi 99.9 7.1E-23 1.5E-27 158.2 11.2 86 1-98 123-209 (251)
224 PRK10982 galactose/methyl gala 99.9 3.7E-23 8E-28 172.2 10.2 83 1-94 394-476 (491)
225 TIGR02211 LolD_lipo_ex lipopro 99.9 4E-23 8.6E-28 155.4 9.4 76 1-88 144-220 (221)
226 COG3842 PotA ABC-type spermidi 99.9 2.7E-23 5.8E-28 167.8 8.9 90 1-101 139-229 (352)
227 TIGR02633 xylG D-xylose ABC tr 99.9 3.4E-23 7.4E-28 172.6 9.8 84 1-95 406-489 (500)
228 cd03245 ABCC_bacteriocin_expor 99.9 4E-23 8.6E-28 155.3 9.1 78 1-91 143-220 (220)
229 PRK13632 cbiO cobalt transport 99.9 6.3E-23 1.4E-27 159.6 10.4 87 1-99 145-232 (271)
230 PRK09700 D-allose transporter 99.9 4.7E-23 1E-27 172.3 10.3 82 1-93 412-493 (510)
231 PRK11248 tauB taurine transpor 99.9 6.4E-23 1.4E-27 158.5 10.3 82 1-93 131-215 (255)
232 PRK14246 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 156.9 12.0 87 1-99 156-242 (257)
233 cd03229 ABC_Class3 This class 99.9 6.2E-23 1.3E-27 150.6 9.3 75 1-86 103-178 (178)
234 COG0410 LivF ABC-type branched 99.9 2.1E-22 4.6E-27 154.0 12.2 96 1-110 139-235 (237)
235 PRK13545 tagH teichoic acids e 99.9 1.4E-22 3.1E-27 170.8 12.3 88 1-99 146-233 (549)
236 PRK10584 putative ABC transpor 99.9 9.1E-23 2E-27 154.3 9.9 77 1-89 149-226 (228)
237 cd03247 ABCC_cytochrome_bd The 99.9 1.3E-22 2.8E-27 148.8 9.9 78 1-91 101-178 (178)
238 KOG0055|consensus 99.9 1.7E-22 3.7E-27 180.8 12.2 87 1-100 492-578 (1228)
239 COG4161 ArtP ABC-type arginine 99.9 2.4E-22 5.3E-27 148.4 10.8 85 1-96 144-228 (242)
240 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.4E-22 3.1E-27 151.3 9.5 80 1-93 128-207 (207)
241 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.1E-22 4.6E-27 157.9 10.8 86 1-99 141-226 (275)
242 COG4608 AppF ABC-type oligopep 99.9 1.9E-22 4.2E-27 157.2 10.2 90 1-101 112-202 (268)
243 cd03288 ABCC_SUR2 The SUR doma 99.9 3.2E-22 7E-27 154.4 11.3 86 1-99 159-244 (257)
244 cd03270 ABC_UvrA_I The excisio 99.9 1.9E-22 4.2E-27 153.5 9.9 79 1-91 140-226 (226)
245 PRK11288 araG L-arabinose tran 99.9 1.9E-22 4E-27 168.5 10.5 82 1-93 143-224 (501)
246 TIGR01257 rim_protein retinal- 99.9 2E-22 4.4E-27 188.9 11.6 89 1-100 2073-2161(2272)
247 COG3839 MalK ABC-type sugar tr 99.9 1.6E-22 3.4E-27 162.6 9.0 90 1-101 136-226 (338)
248 PRK11174 cysteine/glutathione 99.9 4.1E-22 8.9E-27 168.7 12.0 86 1-99 488-573 (588)
249 COG4172 ABC-type uncharacteriz 99.9 4.5E-22 9.7E-27 162.8 11.4 90 1-101 160-250 (534)
250 cd03244 ABCC_MRP_domain2 Domai 99.9 3.5E-22 7.5E-27 150.3 9.3 79 1-92 142-220 (221)
251 COG2274 SunT ABC-type bacterio 99.9 3.6E-22 7.8E-27 173.2 10.1 86 1-99 612-697 (709)
252 cd03228 ABCC_MRP_Like The MRP 99.9 4.1E-22 8.8E-27 145.4 8.4 73 1-86 99-171 (171)
253 COG1132 MdlB ABC-type multidru 99.9 9.1E-22 2E-26 166.2 11.6 86 1-99 468-553 (567)
254 cd03237 ABC_RNaseL_inhibitor_d 99.9 8.9E-22 1.9E-26 151.9 10.5 86 1-97 118-206 (246)
255 TIGR01842 type_I_sec_PrtD type 99.9 7.7E-22 1.7E-26 166.1 10.9 86 1-98 457-542 (544)
256 PLN03211 ABC transporter G-25; 99.9 7.4E-22 1.6E-26 170.3 10.8 87 1-98 209-296 (659)
257 PRK11176 lipid transporter ATP 99.9 1.2E-21 2.6E-26 165.5 11.8 86 1-99 483-568 (582)
258 cd03233 ABC_PDR_domain1 The pl 99.9 1.1E-21 2.3E-26 146.9 10.2 80 1-91 121-202 (202)
259 cd03222 ABC_RNaseL_inhibitor T 99.9 8.5E-22 1.8E-26 145.9 9.5 84 1-95 74-160 (177)
260 COG2884 FtsE Predicted ATPase 99.9 9.6E-22 2.1E-26 147.3 9.7 81 1-92 140-220 (223)
261 PRK15177 Vi polysaccharide exp 99.9 1.6E-21 3.4E-26 147.2 10.8 85 1-97 107-191 (213)
262 COG4988 CydD ABC-type transpor 99.9 1.4E-21 2.9E-26 164.6 11.4 87 1-100 459-545 (559)
263 PRK10790 putative multidrug tr 99.9 1.6E-21 3.5E-26 165.3 12.0 94 1-109 479-572 (592)
264 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.4E-21 3E-26 168.4 11.7 84 1-99 591-674 (686)
265 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.5E-21 5.3E-26 152.3 11.9 86 1-99 162-248 (282)
266 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.1E-21 2.4E-26 169.4 10.6 84 1-99 618-701 (710)
267 COG4987 CydC ABC-type transpor 99.9 1.8E-21 3.8E-26 162.9 10.9 86 1-99 477-562 (573)
268 TIGR01192 chvA glucan exporter 99.9 2.5E-21 5.4E-26 164.6 12.1 86 1-99 474-559 (585)
269 PRK13657 cyclic beta-1,2-gluca 99.9 2.6E-21 5.7E-26 164.0 11.8 95 1-110 474-568 (588)
270 cd03248 ABCC_TAP TAP, the Tran 99.9 1.1E-21 2.4E-26 148.2 8.4 74 1-87 153-226 (226)
271 COG4148 ModC ABC-type molybdat 99.9 1.3E-21 2.9E-26 153.9 9.0 89 1-100 131-220 (352)
272 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.8E-21 4E-26 139.0 9.0 72 1-86 73-144 (144)
273 TIGR01846 type_I_sec_HlyB type 99.9 3.1E-21 6.7E-26 166.5 12.1 87 1-100 596-682 (694)
274 TIGR03375 type_I_sec_LssB type 99.9 1.8E-21 4E-26 167.8 10.6 86 1-99 604-689 (694)
275 PRK11160 cysteine/glutathione 99.9 2.9E-21 6.2E-26 163.8 11.5 86 1-99 478-563 (574)
276 TIGR01257 rim_protein retinal- 99.9 2.2E-21 4.7E-26 182.1 11.4 88 1-100 1064-1151(2272)
277 PRK10789 putative multidrug tr 99.9 3.7E-21 8E-26 162.9 11.8 87 1-100 454-540 (569)
278 PRK15064 ABC transporter ATP-b 99.9 2.2E-21 4.8E-26 163.0 10.3 85 1-99 441-526 (530)
279 PRK15064 ABC transporter ATP-b 99.9 2.6E-21 5.7E-26 162.5 10.7 84 1-98 158-242 (530)
280 TIGR02982 heterocyst_DevA ABC 99.9 2.5E-21 5.5E-26 146.0 9.3 76 1-88 144-220 (220)
281 PRK10938 putative molybdenum t 99.9 1.6E-21 3.4E-26 162.3 8.9 81 1-92 404-486 (490)
282 cd03238 ABC_UvrA The excision 99.9 4E-21 8.8E-26 142.1 9.8 79 1-91 90-170 (176)
283 TIGR01193 bacteriocin_ABC ABC- 99.9 3.2E-21 7E-26 166.6 10.6 85 1-99 614-698 (708)
284 TIGR00955 3a01204 The Eye Pigm 99.8 4.5E-21 9.7E-26 164.2 10.7 87 1-98 169-256 (617)
285 cd03271 ABC_UvrA_II The excisi 99.8 6.1E-21 1.3E-25 148.9 10.3 81 1-93 172-261 (261)
286 PRK10247 putative ABC transpor 99.8 2.6E-21 5.6E-26 146.6 7.9 80 1-92 140-221 (225)
287 TIGR02203 MsbA_lipidA lipid A 99.8 9.4E-21 2E-25 159.5 11.7 86 1-99 472-557 (571)
288 cd00267 ABC_ATPase ABC (ATP-bi 99.8 8.1E-21 1.8E-25 136.4 9.6 75 1-86 83-157 (157)
289 PRK13543 cytochrome c biogenes 99.8 6.1E-21 1.3E-25 143.6 9.2 67 1-67 140-206 (214)
290 TIGR02324 CP_lyasePhnL phospho 99.8 5.6E-21 1.2E-25 144.1 9.0 68 1-68 152-219 (224)
291 cd03250 ABCC_MRP_domain1 Domai 99.8 5E-21 1.1E-25 142.7 8.6 74 1-86 130-204 (204)
292 cd03236 ABC_RNaseL_inhibitor_d 99.8 5.4E-21 1.2E-25 148.3 9.1 79 1-91 142-220 (255)
293 COG1129 MglA ABC-type sugar tr 99.8 4E-21 8.7E-26 160.6 8.9 84 1-95 404-487 (500)
294 KOG0058|consensus 99.8 9.4E-21 2E-25 162.6 11.2 87 1-100 607-693 (716)
295 TIGR00958 3a01208 Conjugate Tr 99.8 5.6E-21 1.2E-25 165.6 9.8 84 1-99 620-703 (711)
296 PRK10636 putative ABC transpor 99.8 6.8E-21 1.5E-25 163.7 10.1 83 1-97 433-516 (638)
297 COG4559 ABC-type hemin transpo 99.8 1.4E-20 3E-25 143.3 10.5 96 1-110 138-239 (259)
298 PRK11819 putative ABC transpor 99.8 8E-21 1.7E-25 160.7 10.2 84 1-98 166-250 (556)
299 cd03290 ABCC_SUR1_N The SUR do 99.8 6.1E-21 1.3E-25 143.5 8.4 74 1-86 143-218 (218)
300 COG4586 ABC-type uncharacteriz 99.8 1.5E-20 3.2E-25 147.4 10.4 89 1-100 159-248 (325)
301 COG1129 MglA ABC-type sugar tr 99.8 9.9E-21 2.2E-25 158.3 10.1 82 1-93 148-229 (500)
302 TIGR03608 L_ocin_972_ABC putat 99.8 8.8E-21 1.9E-25 141.1 8.6 66 1-67 137-202 (206)
303 PRK13409 putative ATPase RIL; 99.8 1E-20 2.2E-25 161.6 9.7 80 1-92 456-536 (590)
304 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.4E-20 2.9E-25 159.1 10.3 84 1-98 164-248 (552)
305 KOG0055|consensus 99.8 1.8E-20 3.8E-25 168.1 10.9 86 1-99 1129-1214(1228)
306 COG4604 CeuD ABC-type enteroch 99.8 1.4E-20 2.9E-25 142.3 8.6 95 1-109 138-233 (252)
307 cd03223 ABCD_peroxisomal_ALDP 99.8 1.5E-20 3.3E-25 136.9 8.6 71 1-86 94-164 (166)
308 TIGR02204 MsbA_rel ABC transpo 99.8 1.9E-20 4.1E-25 158.0 10.4 86 1-99 479-564 (576)
309 PRK11147 ABC transporter ATPas 99.8 2.1E-20 4.6E-25 160.4 10.4 84 1-98 159-243 (635)
310 PTZ00265 multidrug resistance 99.8 2.8E-20 6.2E-25 171.3 10.8 86 1-98 1361-1452(1466)
311 PRK10636 putative ABC transpor 99.8 3.3E-20 7.2E-25 159.5 10.3 83 1-97 152-235 (638)
312 KOG0059|consensus 99.8 4E-20 8.8E-25 163.8 11.0 89 1-100 701-789 (885)
313 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.9E-20 8.4E-25 156.3 10.2 83 1-97 446-530 (552)
314 PRK13538 cytochrome c biogenes 99.8 2.8E-20 6E-25 139.0 8.1 67 1-67 132-198 (204)
315 TIGR01166 cbiO cobalt transpor 99.8 1.8E-20 3.9E-25 138.3 6.9 60 1-60 130-189 (190)
316 cd03231 ABC_CcmA_heme_exporter 99.8 3.3E-20 7.1E-25 138.4 8.3 67 1-67 128-194 (201)
317 PLN03232 ABC transporter C fam 99.8 7.6E-20 1.6E-24 168.8 12.3 87 1-100 1374-1460(1495)
318 PLN03073 ABC transporter F fam 99.8 5.8E-20 1.3E-24 159.9 10.6 82 1-96 630-712 (718)
319 PLN03130 ABC transporter C fam 99.8 8.7E-20 1.9E-24 169.3 11.9 86 1-99 1377-1462(1622)
320 PRK11819 putative ABC transpor 99.8 6.5E-20 1.4E-24 155.2 10.2 85 1-99 448-534 (556)
321 TIGR00957 MRP_assoc_pro multi 99.8 1.2E-19 2.7E-24 167.6 12.7 86 1-99 1424-1509(1522)
322 PTZ00265 multidrug resistance 99.8 6E-20 1.3E-24 169.2 10.4 73 1-85 582-655 (1466)
323 TIGR01194 cyc_pep_trnsptr cycl 99.8 8.8E-20 1.9E-24 154.3 10.3 78 1-90 473-551 (555)
324 PRK10522 multidrug transporter 99.8 1E-19 2.2E-24 153.5 10.2 80 1-92 452-532 (547)
325 PRK10535 macrolide transporter 99.8 1.1E-19 2.4E-24 156.4 10.3 85 1-97 147-231 (648)
326 PLN03140 ABC transporter G fam 99.8 1.2E-19 2.6E-24 167.1 10.9 83 1-94 1022-1106(1470)
327 PLN03073 ABC transporter F fam 99.8 1.5E-19 3.2E-24 157.4 10.7 83 1-97 347-430 (718)
328 TIGR00956 3a01205 Pleiotropic 99.8 1.3E-19 2.8E-24 166.5 10.8 86 1-97 212-299 (1394)
329 PRK13539 cytochrome c biogenes 99.8 1E-19 2.3E-24 136.3 8.4 65 1-67 130-194 (207)
330 COG1119 ModF ABC-type molybden 99.8 1.2E-19 2.6E-24 140.1 8.5 80 2-92 175-256 (257)
331 COG3845 ABC-type uncharacteriz 99.8 2.7E-19 5.9E-24 148.5 10.6 80 2-92 144-223 (501)
332 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.7E-19 5.9E-24 134.8 9.2 76 1-87 126-211 (213)
333 PRK00349 uvrA excinuclease ABC 99.8 2.4E-19 5.2E-24 159.5 10.3 87 1-99 492-586 (943)
334 PTZ00243 ABC transporter; Prov 99.8 5.8E-19 1.3E-23 163.5 13.0 86 1-99 1448-1534(1560)
335 PRK13409 putative ATPase RIL; 99.8 2E-19 4.3E-24 153.7 9.2 73 1-85 215-287 (590)
336 KOG0057|consensus 99.8 3.4E-19 7.4E-24 149.5 10.3 85 1-98 490-574 (591)
337 TIGR00630 uvra excinuclease AB 99.8 2.8E-19 6E-24 158.8 10.2 86 1-98 490-583 (924)
338 TIGR00956 3a01205 Pleiotropic 99.8 2.7E-19 6E-24 164.3 9.8 83 1-94 904-989 (1394)
339 TIGR01271 CFTR_protein cystic 99.8 7.4E-19 1.6E-23 162.3 12.1 86 1-99 1356-1441(1490)
340 PRK11147 ABC transporter ATPas 99.8 4.2E-19 9E-24 152.4 9.6 82 1-96 443-526 (635)
341 COG4107 PhnK ABC-type phosphon 99.8 1.1E-18 2.3E-23 130.4 10.3 90 1-101 154-244 (258)
342 PLN03232 ABC transporter C fam 99.8 8.6E-19 1.9E-23 161.9 11.1 86 1-99 743-829 (1495)
343 PRK13540 cytochrome c biogenes 99.8 4.5E-19 9.7E-24 132.1 7.6 66 1-67 130-195 (200)
344 PRK00349 uvrA excinuclease ABC 99.8 2.1E-18 4.6E-23 153.5 12.4 88 1-100 833-929 (943)
345 TIGR01189 ccmA heme ABC export 99.8 6E-19 1.3E-23 131.1 7.3 61 1-61 130-190 (198)
346 PLN03140 ABC transporter G fam 99.8 7.2E-19 1.6E-23 162.1 9.0 86 1-97 339-426 (1470)
347 COG4525 TauB ABC-type taurine 99.8 1.1E-18 2.3E-23 132.0 8.1 83 1-94 135-220 (259)
348 TIGR00957 MRP_assoc_pro multi 99.8 1.4E-18 2.9E-23 160.8 10.1 87 1-99 763-851 (1522)
349 PLN03130 ABC transporter C fam 99.8 2.4E-18 5.2E-23 159.9 11.5 86 1-99 743-829 (1622)
350 COG4674 Uncharacterized ABC-ty 99.8 1.4E-18 3E-23 131.3 8.1 88 1-100 150-237 (249)
351 TIGR01271 CFTR_protein cystic 99.8 2E-18 4.3E-23 159.5 10.9 85 1-98 551-636 (1490)
352 PRK13541 cytochrome c biogenes 99.8 9.7E-19 2.1E-23 129.8 7.1 63 1-63 126-188 (195)
353 COG4181 Predicted ABC-type tra 99.8 2.7E-18 5.8E-23 127.6 8.7 78 1-90 149-227 (228)
354 KOG0061|consensus 99.8 2.9E-18 6.2E-23 147.2 9.8 87 1-98 173-260 (613)
355 PRK00635 excinuclease ABC subu 99.8 3.5E-18 7.7E-23 158.6 11.0 86 1-98 812-906 (1809)
356 PTZ00243 ABC transporter; Prov 99.8 3.9E-18 8.5E-23 158.0 10.8 87 1-99 785-871 (1560)
357 TIGR00630 uvra excinuclease AB 99.8 4.6E-18 1E-22 151.1 10.7 84 1-96 831-923 (924)
358 TIGR02857 CydD thiol reductant 99.7 3.6E-18 7.7E-23 143.1 8.3 65 1-67 461-525 (529)
359 PRK00635 excinuclease ABC subu 99.7 8.5E-18 1.8E-22 156.1 10.8 86 1-98 479-572 (1809)
360 COG4618 ArpD ABC-type protease 99.7 7.8E-18 1.7E-22 140.6 8.8 87 1-99 475-561 (580)
361 COG0488 Uup ATPase components 99.7 2E-17 4.3E-22 139.9 10.0 85 1-99 156-241 (530)
362 COG5265 ATM1 ABC-type transpor 99.7 1.7E-17 3.6E-22 136.3 9.1 86 1-99 402-487 (497)
363 TIGR00954 3a01203 Peroxysomal 99.7 1.3E-17 2.8E-22 143.9 8.7 63 1-67 585-647 (659)
364 cd03278 ABC_SMC_barmotin Barmo 99.7 2.1E-17 4.6E-22 123.7 8.6 66 1-68 116-185 (197)
365 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.2E-17 2.6E-22 125.1 7.2 73 1-85 112-191 (198)
366 COG1101 PhnK ABC-type uncharac 99.7 3.2E-17 6.9E-22 125.3 8.9 81 1-92 151-232 (263)
367 cd03272 ABC_SMC3_euk Eukaryoti 99.7 2.4E-17 5.2E-22 125.5 8.3 67 1-69 161-231 (243)
368 cd03275 ABC_SMC1_euk Eukaryoti 99.7 4.2E-17 9.1E-22 125.4 8.5 67 1-68 158-228 (247)
369 cd03240 ABC_Rad50 The catalyti 99.7 7.3E-17 1.6E-21 121.3 9.0 66 1-67 118-191 (204)
370 cd03273 ABC_SMC2_euk Eukaryoti 99.7 6.3E-17 1.4E-21 124.5 8.4 67 1-69 169-239 (251)
371 TIGR02868 CydC thiol reductant 99.7 3.4E-17 7.3E-22 137.2 7.2 57 1-58 473-529 (529)
372 COG0396 sufC Cysteine desulfur 99.7 1.5E-16 3.2E-21 122.2 10.0 87 1-98 147-233 (251)
373 COG1134 TagH ABC-type polysacc 99.7 1.8E-16 3.9E-21 122.3 10.3 87 1-98 150-236 (249)
374 COG4167 SapF ABC-type antimicr 99.7 2.4E-16 5.1E-21 118.6 10.3 89 2-101 153-242 (267)
375 cd03277 ABC_SMC5_euk Eukaryoti 99.7 4.5E-17 9.8E-22 123.4 6.5 77 1-86 129-211 (213)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.7 2.4E-16 5.2E-21 119.3 8.7 65 1-67 130-198 (212)
377 KOG0056|consensus 99.7 1.9E-16 4.1E-21 132.6 8.8 87 1-100 677-763 (790)
378 cd03239 ABC_SMC_head The struc 99.7 6.9E-16 1.5E-20 114.0 9.0 67 1-68 97-167 (178)
379 KOG0054|consensus 99.6 1E-15 2.2E-20 139.7 9.8 87 1-99 646-732 (1381)
380 COG4170 SapD ABC-type antimicr 99.6 8.3E-16 1.8E-20 117.9 6.8 89 2-101 162-251 (330)
381 COG4619 ABC-type uncharacteriz 99.6 2.1E-15 4.6E-20 111.9 8.3 76 1-87 136-212 (223)
382 KOG0054|consensus 99.6 2.6E-15 5.7E-20 137.0 10.3 87 2-101 1279-1365(1381)
383 COG3845 ABC-type uncharacteriz 99.6 1.7E-15 3.8E-20 126.0 8.1 84 1-95 406-489 (501)
384 cd03241 ABC_RecN RecN ATPase i 99.6 3.3E-15 7.2E-20 116.8 8.7 74 1-87 173-250 (276)
385 KOG0927|consensus 99.6 4.2E-15 9E-20 125.0 9.7 85 1-98 224-309 (614)
386 cd03227 ABC_Class2 ABC-type Cl 99.6 8.9E-15 1.9E-19 106.1 10.3 66 1-67 80-149 (162)
387 cd03280 ABC_MutS2 MutS2 homolo 99.6 4.7E-15 1E-19 110.7 8.8 78 1-91 94-172 (200)
388 COG0488 Uup ATPase components 99.6 5.4E-15 1.2E-19 125.2 9.9 82 1-97 442-524 (530)
389 TIGR00634 recN DNA repair prot 99.6 6.6E-15 1.4E-19 125.2 8.8 73 1-86 443-519 (563)
390 TIGR00618 sbcc exonuclease Sbc 99.6 1.3E-14 2.8E-19 130.6 9.5 67 1-67 953-1029(1042)
391 COG4138 BtuD ABC-type cobalami 99.6 2E-15 4.3E-20 112.9 3.4 88 1-99 128-222 (248)
392 PHA02562 46 endonuclease subun 99.5 3.2E-14 6.9E-19 119.8 7.9 64 1-67 471-545 (562)
393 PRK10869 recombination and rep 99.5 6.9E-14 1.5E-18 119.0 8.9 73 1-86 433-509 (553)
394 COG4778 PhnL ABC-type phosphon 99.5 4.8E-14 1E-18 105.0 6.7 67 1-67 155-221 (235)
395 KOG0062|consensus 99.5 6E-14 1.3E-18 117.6 7.8 84 1-98 201-285 (582)
396 KOG0062|consensus 99.5 7.5E-14 1.6E-18 117.0 8.2 75 1-89 485-559 (582)
397 TIGR00606 rad50 rad50. This fa 99.5 2.5E-13 5.3E-18 124.8 10.3 67 1-67 1202-1279(1311)
398 PRK03918 chromosome segregatio 99.5 2E-13 4.3E-18 120.2 9.1 66 1-67 791-862 (880)
399 COG0178 UvrA Excinuclease ATPa 99.5 4.4E-13 9.4E-18 117.1 10.7 87 1-99 825-920 (935)
400 KOG0927|consensus 99.4 1.4E-13 3.1E-18 115.9 6.2 80 1-94 512-592 (614)
401 cd03242 ABC_RecF RecF is a rec 99.4 4.1E-13 8.8E-18 104.7 7.0 75 1-87 186-269 (270)
402 PRK10246 exonuclease subunit S 99.4 8.5E-13 1.8E-17 119.2 9.4 67 1-67 952-1026(1047)
403 TIGR02168 SMC_prok_B chromosom 99.4 7.9E-13 1.7E-17 117.8 9.1 67 1-69 1092-1162(1179)
404 cd03243 ABC_MutS_homologs The 99.4 1.3E-12 2.8E-17 97.6 7.7 84 2-97 94-178 (202)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.4 1.5E-12 3.2E-17 99.3 8.0 78 1-92 92-175 (222)
406 PRK01156 chromosome segregatio 99.4 1.7E-12 3.6E-17 115.1 9.4 68 1-69 804-880 (895)
407 COG1245 Predicted ATPase, RNas 99.4 2.4E-12 5.3E-17 107.2 9.1 67 1-67 216-282 (591)
408 KOG0065|consensus 99.4 4.1E-13 9E-18 121.7 4.9 97 2-113 933-1031(1391)
409 COG4133 CcmA ABC-type transpor 99.4 2.2E-12 4.8E-17 96.8 7.1 58 2-59 134-191 (209)
410 COG1245 Predicted ATPase, RNas 99.3 3.1E-12 6.7E-17 106.6 7.9 67 1-67 458-525 (591)
411 COG4136 ABC-type uncharacteriz 99.3 1.2E-12 2.6E-17 96.0 4.7 62 1-62 137-199 (213)
412 PRK00064 recF recombination pr 99.3 1.1E-11 2.5E-16 100.5 8.5 75 1-87 276-359 (361)
413 TIGR02169 SMC_prok_A chromosom 99.3 8.6E-12 1.9E-16 111.7 7.8 67 1-69 1077-1147(1164)
414 PRK02224 chromosome segregatio 99.2 4.8E-11 1.1E-15 105.5 8.9 66 1-67 784-862 (880)
415 COG4178 ABC-type uncharacteriz 99.2 3.4E-11 7.3E-16 103.1 6.8 65 1-67 518-582 (604)
416 smart00534 MUTSac ATPase domai 99.2 1.2E-10 2.5E-15 86.2 8.5 58 9-67 69-130 (185)
417 COG0178 UvrA Excinuclease ATPa 99.2 2.2E-10 4.8E-15 100.4 11.3 99 1-113 484-590 (935)
418 KOG2355|consensus 99.2 1.3E-10 2.8E-15 89.1 8.3 86 2-98 151-237 (291)
419 KOG0066|consensus 99.2 4.2E-11 9.1E-16 100.1 5.7 58 1-61 707-764 (807)
420 TIGR00611 recf recF protein. A 99.1 1.1E-10 2.5E-15 94.9 7.0 59 1-62 278-345 (365)
421 cd03283 ABC_MutS-like MutS-lik 99.1 3.4E-10 7.5E-15 85.0 8.8 60 5-64 92-154 (199)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.1 7.8E-10 1.7E-14 83.5 8.4 64 2-66 95-159 (204)
423 KOG0066|consensus 99.1 1.2E-10 2.7E-15 97.3 3.9 75 1-89 415-489 (807)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.0 9.7E-10 2.1E-14 83.3 8.4 63 3-65 95-161 (213)
425 KOG0065|consensus 99.0 2.3E-10 5E-15 104.2 5.2 87 1-98 263-351 (1391)
426 COG4615 PvdE ABC-type sideroph 99.0 1.1E-09 2.3E-14 90.5 6.5 77 2-90 452-529 (546)
427 cd03284 ABC_MutS1 MutS1 homolo 99.0 2E-09 4.4E-14 81.7 7.0 76 8-97 99-180 (216)
428 PRK00409 recombination and DNA 98.9 4.4E-09 9.5E-14 93.0 7.8 66 1-67 393-459 (782)
429 PRK14079 recF recombination pr 98.9 5.7E-09 1.2E-13 84.4 7.4 74 1-92 266-348 (349)
430 TIGR02680 conserved hypothetic 98.8 6.5E-09 1.4E-13 96.3 7.0 56 1-59 1250-1317(1353)
431 PF13304 AAA_21: AAA domain; P 98.8 2.1E-08 4.5E-13 72.9 7.7 59 2-60 240-301 (303)
432 PF02463 SMC_N: RecF/RecN/SMC 98.8 2.2E-08 4.9E-13 75.0 7.3 66 1-68 139-208 (220)
433 KOG0060|consensus 98.8 1.4E-08 2.9E-13 86.7 6.3 57 1-60 573-629 (659)
434 cd01124 KaiC KaiC is a circadi 98.7 2.2E-08 4.8E-13 72.7 5.0 55 6-60 85-142 (187)
435 TIGR01069 mutS2 MutS2 family p 98.7 4.5E-08 9.7E-13 86.5 7.8 60 1-61 388-448 (771)
436 PTZ00132 GTP-binding nuclear p 98.7 4.2E-08 9.1E-13 73.3 5.4 44 2-45 156-204 (215)
437 PRK13830 conjugal transfer pro 98.7 7.2E-08 1.6E-12 85.6 7.6 79 11-93 647-728 (818)
438 cd03286 ABC_MSH6_euk MutS6 hom 98.6 1.6E-07 3.4E-12 71.7 7.8 63 4-66 97-161 (218)
439 COG0419 SbcC ATPase involved i 98.6 1.5E-07 3.3E-12 84.2 8.6 66 1-67 818-891 (908)
440 PRK13695 putative NTPase; Prov 98.6 3.9E-07 8.4E-12 66.3 8.9 73 2-90 82-156 (174)
441 TIGR02858 spore_III_AA stage I 98.5 6.4E-07 1.4E-11 70.5 9.1 80 8-97 186-268 (270)
442 KOG0063|consensus 98.5 2.6E-07 5.6E-12 77.2 6.4 69 1-69 216-284 (592)
443 PRK13891 conjugal transfer pro 98.4 1.1E-06 2.3E-11 78.6 8.8 60 9-68 680-742 (852)
444 KOG0063|consensus 98.4 3.8E-07 8.2E-12 76.2 5.3 67 1-67 459-526 (592)
445 COG2401 ABC-type ATPase fused 98.4 6.8E-07 1.5E-11 74.6 6.7 76 2-88 511-588 (593)
446 cd03287 ABC_MSH3_euk MutS3 hom 98.4 1.5E-06 3.3E-11 66.5 8.0 60 3-62 97-158 (222)
447 KOG0064|consensus 98.4 2.6E-07 5.7E-12 78.7 4.0 58 1-61 615-672 (728)
448 PRK06067 flagellar accessory p 98.2 1.4E-05 3E-10 60.7 8.5 79 2-84 104-187 (234)
449 PF13558 SbcCD_C: Putative exo 98.2 5E-06 1.1E-10 55.1 5.2 28 16-43 63-90 (90)
450 cd01128 rho_factor Transcripti 98.0 2.7E-06 5.9E-11 66.2 2.7 69 4-88 143-212 (249)
451 PRK13873 conjugal transfer ATP 98.0 2.2E-05 4.7E-10 69.9 8.5 72 11-86 630-704 (811)
452 PRK07721 fliI flagellum-specif 97.9 3.5E-05 7.5E-10 64.5 7.4 60 24-96 273-341 (438)
453 PRK08533 flagellar accessory p 97.9 4.3E-05 9.4E-10 58.5 7.0 45 15-60 116-164 (230)
454 PRK13898 type IV secretion sys 97.9 9.6E-05 2.1E-09 65.7 9.3 70 11-84 637-709 (800)
455 PF13175 AAA_15: AAA ATPase do 97.8 0.0001 2.2E-09 59.2 7.4 60 1-60 344-414 (415)
456 COG3910 Predicted ATPase [Gene 97.8 6.4E-05 1.4E-09 57.1 5.5 46 14-59 144-189 (233)
457 cd01125 repA Hexameric Replica 97.7 3E-05 6.4E-10 59.2 3.7 47 12-59 107-160 (239)
458 cd01120 RecA-like_NTPases RecA 97.6 0.0002 4.3E-09 49.7 6.3 57 5-61 74-140 (165)
459 COG1196 Smc Chromosome segrega 97.5 0.00037 7.9E-09 64.3 8.3 67 1-69 1069-1139(1163)
460 TIGR00152 dephospho-CoA kinase 97.5 4.7E-05 1E-09 56.1 1.8 64 2-67 61-126 (188)
461 PF13166 AAA_13: AAA domain 97.4 0.00083 1.8E-08 58.5 9.0 66 2-67 504-580 (712)
462 TIGR02788 VirB11 P-type DNA tr 97.4 0.00046 1E-08 54.9 6.5 73 7-98 209-281 (308)
463 PRK05399 DNA mismatch repair p 97.4 0.00065 1.4E-08 61.1 8.1 59 6-67 674-738 (854)
464 TIGR03185 DNA_S_dndD DNA sulfu 97.3 0.00088 1.9E-08 58.3 6.9 60 1-64 554-620 (650)
465 COG4637 Predicted ATPase [Gene 97.2 0.0019 4E-08 52.5 7.7 65 2-67 274-340 (373)
466 KOG0962|consensus 97.2 0.00087 1.9E-08 62.0 6.3 61 5-65 1196-1261(1294)
467 KOG0964|consensus 97.2 0.00053 1.2E-08 61.9 4.6 67 1-69 1100-1170(1200)
468 PRK08699 DNA polymerase III su 97.1 0.001 2.3E-08 53.6 5.4 44 20-64 116-159 (325)
469 COG0497 RecN ATPase involved i 97.1 0.0042 9.1E-08 53.5 9.1 65 1-67 434-502 (557)
470 cd01131 PilT Pilus retraction 96.8 0.0063 1.4E-07 45.3 7.3 56 8-71 66-121 (198)
471 PRK14088 dnaA chromosomal repl 96.8 0.0048 1E-07 51.6 6.9 70 15-94 193-264 (440)
472 TIGR02655 circ_KaiC circadian 96.6 0.00053 1.2E-08 57.8 0.1 45 16-60 120-169 (484)
473 PRK06793 fliI flagellum-specif 96.4 0.0034 7.4E-08 52.6 3.8 75 2-93 225-306 (432)
474 PF00488 MutS_V: MutS domain V 96.3 0.034 7.3E-07 42.8 8.2 57 5-61 111-169 (235)
475 TIGR01070 mutS1 DNA mismatch r 95.4 0.071 1.5E-06 48.2 7.8 59 7-66 662-722 (840)
476 COG1195 RecF Recombinational D 95.2 0.068 1.5E-06 44.0 6.4 74 2-87 279-361 (363)
477 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.028 6E-07 42.2 3.8 43 15-57 106-153 (224)
478 TIGR01420 pilT_fam pilus retra 95.0 0.11 2.3E-06 42.0 7.1 54 8-69 187-240 (343)
479 KOG0933|consensus 95.0 0.027 5.9E-07 51.4 3.9 57 1-58 1085-1145(1174)
480 PRK06893 DNA replication initi 94.8 0.069 1.5E-06 40.6 5.3 45 14-58 89-134 (229)
481 PRK08181 transposase; Validate 94.7 0.16 3.5E-06 40.0 7.2 48 14-62 165-214 (269)
482 smart00382 AAA ATPases associa 94.7 0.26 5.6E-06 32.2 7.4 55 3-57 65-125 (148)
483 TIGR00929 VirB4_CagE type IV s 94.4 0.22 4.8E-06 43.9 8.2 69 13-85 626-697 (785)
484 PF13514 AAA_27: AAA domain 94.4 0.16 3.4E-06 47.0 7.4 56 6-62 1039-1096(1111)
485 PRK13764 ATPase; Provisional 94.2 0.21 4.5E-06 43.7 7.4 63 12-92 320-399 (602)
486 PRK14087 dnaA chromosomal repl 93.7 0.53 1.1E-05 39.6 8.6 50 10-59 200-250 (450)
487 PTZ00454 26S protease regulato 93.5 0.29 6.3E-06 40.6 6.7 53 9-61 231-297 (398)
488 PRK04296 thymidine kinase; Pro 93.4 0.33 7.1E-06 35.9 6.3 51 15-69 77-137 (190)
489 PF09818 ABC_ATPase: Predicted 93.3 0.38 8.2E-06 40.6 7.1 75 2-87 326-416 (448)
490 KOG0996|consensus 93.2 0.11 2.4E-06 48.2 4.1 67 1-69 1198-1268(1293)
491 cd00009 AAA The AAA+ (ATPases 93.1 0.32 7E-06 32.2 5.5 53 6-59 74-131 (151)
492 PRK09302 circadian clock prote 92.9 0.071 1.5E-06 45.1 2.4 45 15-59 129-178 (509)
493 PRK06921 hypothetical protein; 92.8 0.71 1.5E-05 36.1 7.6 57 13-69 174-241 (266)
494 COG4694 Uncharacterized protei 92.6 0.29 6.3E-06 42.7 5.5 51 17-67 556-606 (758)
495 cd00561 CobA_CobO_BtuR ATP:cor 92.2 0.35 7.6E-06 35.3 4.9 59 8-67 85-148 (159)
496 TIGR01026 fliI_yscN ATPase Fli 92.2 0.17 3.7E-06 42.6 3.6 62 23-97 277-347 (440)
497 COG4938 Uncharacterized conser 91.8 0.49 1.1E-05 38.4 5.6 55 10-64 254-308 (374)
498 PRK06526 transposase; Provisio 91.8 1.1 2.3E-05 35.0 7.4 44 14-58 157-201 (254)
499 COG3044 Predicted ATPase of th 91.7 0.65 1.4E-05 39.4 6.4 77 1-88 323-412 (554)
500 PTZ00361 26 proteosome regulat 91.3 0.73 1.6E-05 38.8 6.5 55 9-63 269-337 (438)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.5e-29 Score=190.19 Aligned_cols=96 Identities=31% Similarity=0.571 Sum_probs=89.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+|||||+.+|+++|+|||||+|||+....+.+.+++++++|.|.+++||++.++.+++|| |+
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadr-----------vi 207 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADR-----------VI 207 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhhe-----------EE
Confidence 8999999999999999999999999999999999999999999999999999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhhccCcchHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLET 107 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~ 107 (128)
+|++|+++.+|+|++++..+..+...+
T Consensus 208 Fmd~G~iie~g~p~~~f~~p~~~R~~~ 234 (240)
T COG1126 208 FMDQGKIIEEGPPEEFFDNPKSERTRQ 234 (240)
T ss_pred EeeCCEEEEecCHHHHhcCCCCHHHHH
Confidence 999999999999999998765444444
No 2
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.2e-28 Score=183.73 Aligned_cols=101 Identities=31% Similarity=0.575 Sum_probs=92.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
.||||||+||||++++|++++|||||+|||..+++.+.+++..++++|++||++||.|++++++||| |+
T Consensus 136 ~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr-----------vi 204 (245)
T COG4555 136 TGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR-----------VI 204 (245)
T ss_pred hhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe-----------EE
Confidence 3999999999999999999999999999999999999999999998899999999999999999998 77
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAFLQL 112 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (128)
++++|.++..|+++++........+++.|...
T Consensus 205 vlh~Gevv~~gs~~~l~~r~~~~~le~~f~~~ 236 (245)
T COG4555 205 VLHKGEVVLEGSIEALDARTVLRNLEEIFAFA 236 (245)
T ss_pred EEecCcEEEcCCHHHHHHHHhhcCHHHHHHHh
Confidence 99999999999999998765556677776543
No 3
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.7e-27 Score=183.12 Aligned_cols=97 Identities=33% Similarity=0.618 Sum_probs=88.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||++|+++|||++.+|+++++||||+||||.+...+-++|.++.+. |.|++++|||++++..+||| +
T Consensus 148 GGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Dr-----------v 216 (263)
T COG1127 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADR-----------V 216 (263)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhce-----------E
Confidence 89999999999999999999999999999999999999999999866 99999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAF 109 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~ 109 (128)
+++.+|+|++.|+++++.+... +-+.++|
T Consensus 217 ~~L~~gkv~~~Gt~~el~~sd~-P~v~qf~ 245 (263)
T COG1127 217 AVLADGKVIAEGTPEELLASDD-PWVRQFF 245 (263)
T ss_pred EEEeCCEEEEeCCHHHHHhCCC-HHHHHHh
Confidence 8999999999999999987532 3344443
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.4e-27 Score=186.85 Aligned_cols=90 Identities=32% Similarity=0.620 Sum_probs=86.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++||.|||||+|||.+.+.|.++++++.++ |.||+++||.|+.+.++||| |
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~r-----------V 212 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDR-----------V 212 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhh-----------h
Confidence 89999999999999999999999999999999999999999999755 99999999999999999999 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+||++|+++..|+..+++..+.
T Consensus 213 avm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 213 AVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred eEeeCCEEEEeccHHHhhcCcc
Confidence 8999999999999999998764
No 5
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=9.3e-27 Score=183.91 Aligned_cols=88 Identities=45% Similarity=0.879 Sum_probs=83.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENG-KTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+|||||++||+||+++|+++||||||+||||.++..++++|++++++| +||+++||.+++++.+||| |
T Consensus 139 ~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~-----------v 207 (293)
T COG1131 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR-----------V 207 (293)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE-----------E
Confidence 699999999999999999999999999999999999999999999876 8999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++++.|+++++...
T Consensus 208 ~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 208 IILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred EEEeCCEEEEeCCHHHHHHh
Confidence 89999999999999987654
No 6
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1e-26 Score=180.98 Aligned_cols=95 Identities=27% Similarity=0.516 Sum_probs=87.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||.|||||+++|++|+|||||+.||+.++..++++++++. ++|+|||+++||++.+.++||| +
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~-----------~ 209 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADH-----------L 209 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 899999999999999999999999999999999999999999998 5599999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAF 109 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~ 109 (128)
++|++|++++.|+|++++.. +.+.+.|
T Consensus 210 i~lk~G~i~a~G~p~evlT~---e~l~~Vy 236 (258)
T COG1120 210 ILLKDGKIVAQGTPEEVLTE---ENLREVY 236 (258)
T ss_pred EEEECCeEEeecCcchhcCH---HHHHHHh
Confidence 79999999999999998865 3455555
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=179.52 Aligned_cols=97 Identities=34% Similarity=0.627 Sum_probs=88.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+|||.+||||+.+|+++||||||++|||.++..+.+.+.++.++ |+||+++|||++|+.+++|| |
T Consensus 138 GGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadr-----------i 206 (309)
T COG1125 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADR-----------I 206 (309)
T ss_pred cchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhce-----------E
Confidence 89999999999999999999999999999999999999999999866 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAF 109 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~ 109 (128)
++|++|+++..++|+++...+. ..+...|
T Consensus 207 ~vm~~G~i~Q~~~P~~il~~Pa-n~FV~~f 235 (309)
T COG1125 207 AVMDAGEIVQYDTPDEILANPA-NDFVEDF 235 (309)
T ss_pred EEecCCeEEEeCCHHHHHhCcc-HHHHHHH
Confidence 8999999999999999998754 3344333
No 8
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=1.5e-26 Score=183.30 Aligned_cols=88 Identities=45% Similarity=0.870 Sum_probs=83.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+++|++|||||||+||||.++..+++++.++.++|+|||++||++++++.+||| |+
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~-----------i~ 209 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR-----------LC 209 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999988 78
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++...
T Consensus 210 il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 210 VIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEECCEEEEECCHHHHHhc
Confidence 9999999999999998654
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.3e-27 Score=181.26 Aligned_cols=95 Identities=39% Similarity=0.607 Sum_probs=84.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+|||.|||||+++|++|+|||||+|+|+.++..|+++|.+++++|+||+++|||++.+.+.||+|+
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi----------- 210 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI----------- 210 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE-----------
Confidence 899999999999999999999999999999999999999999999889999999999999999999844
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
.| |+++.+.|++++.++. +.+...|.
T Consensus 211 ~L-n~~~~~~G~~~~~~~~---~~l~~~~g 236 (254)
T COG1121 211 CL-NRHLIASGPPEEVLTE---ENLEKAFG 236 (254)
T ss_pred EE-cCeeEeccChhhccCH---HHHHHHhC
Confidence 34 6788899999998865 34555554
No 10
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.1e-26 Score=176.21 Aligned_cols=88 Identities=33% Similarity=0.604 Sum_probs=84.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|++||||||||+||...+..|++++.+++++ +.|.|++|||+..++.+||| |
T Consensus 144 GGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdR-----------i 212 (252)
T COG1124 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDR-----------I 212 (252)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhh-----------e
Confidence 89999999999999999999999999999999999999999999855 99999999999999999999 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
+||++|+++..++.++++..
T Consensus 213 ~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 213 AVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred eeeeCCeEEEeechhhhhcC
Confidence 79999999999999998876
No 11
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=178.25 Aligned_cols=88 Identities=35% Similarity=0.646 Sum_probs=83.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||.+|+.+|++|||||||+||||.+++.+.+.+.++..+ |+|+|++|||++.+..+||| +
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~-----------v 209 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADR-----------V 209 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE-----------E
Confidence 89999999999999999999999999999999999999999999876 79999999999999888877 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++.+|+|.+++..
T Consensus 210 ~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 210 VVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEEECCEEeecCCHHHHhhh
Confidence 89999999999999888864
No 12
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.8e-26 Score=180.72 Aligned_cols=91 Identities=30% Similarity=0.505 Sum_probs=86.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||.||.||+.+|++||.||||++||...+.+|.++|+++.+ .|.|+|++|||+..++++||| |
T Consensus 156 GGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDr-----------i 224 (316)
T COG0444 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADR-----------V 224 (316)
T ss_pred CcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce-----------E
Confidence 8999999999999999999999999999999999999999999986 599999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccCc
Q psy6322 80 GLMREGVLLAEESPASLMARRNV 102 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~ 102 (128)
+||..|+|++.|+.++++..+..
T Consensus 225 ~VMYaG~iVE~g~~~~i~~~P~H 247 (316)
T COG0444 225 AVMYAGRIVEEGPVEEIFKNPKH 247 (316)
T ss_pred EEEECcEEEEeCCHHHHhcCCCC
Confidence 89999999999999999987653
No 13
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=4.4e-26 Score=183.33 Aligned_cols=88 Identities=47% Similarity=0.858 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+++|+++||||||+||||.++..++++|.++.++|+|||++||++++++++||| |+
T Consensus 175 ~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~-----------i~ 243 (340)
T PRK13536 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR-----------LC 243 (340)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++...
T Consensus 244 il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 244 VLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEECCEEEEEcCHHHHHhh
Confidence 9999999999999998754
No 14
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=5.5e-26 Score=179.40 Aligned_cols=88 Identities=47% Similarity=0.909 Sum_probs=83.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+++|++|||||||+||||.++..+++.+.+++++|.|||++||+++++..+||| ++
T Consensus 127 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~-----------v~ 195 (302)
T TIGR01188 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDR-----------IA 195 (302)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 196 ~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 196 IIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EEECCEEEEECCHHHHHHh
Confidence 9999999999999988654
No 15
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=1e-25 Score=181.48 Aligned_cols=89 Identities=30% Similarity=0.598 Sum_probs=84.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+||||.++..+++.|++++++ |.|||++||+++.+.++||| +
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~-----------v 211 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC-----------V 211 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999865 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|++++.|++++++..+
T Consensus 212 ~vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 212 AVISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred EEEECCEEEEEcCHHHHHcCC
Confidence 899999999999999998654
No 16
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.1e-26 Score=180.53 Aligned_cols=97 Identities=31% Similarity=0.572 Sum_probs=89.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||.+||||+.+|++||||||||+|||--+.++.+-+.++.++ ++||+++|||++|+.++.|| |
T Consensus 167 GGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r-----------I 235 (386)
T COG4175 167 GGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR-----------I 235 (386)
T ss_pred chHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce-----------E
Confidence 89999999999999999999999999999999999999999999755 99999999999999999987 8
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETA 108 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~ 108 (128)
++|.+|+|+..|+|+++...+..+.+...
T Consensus 236 aimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred EEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 99999999999999999987654444443
No 17
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9e-26 Score=171.61 Aligned_cols=95 Identities=28% Similarity=0.452 Sum_probs=86.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++.+|++||||||||+|||.+..+|.++|.+++ +.-||+++||+|..+.+++|+ .+
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~-----------ta 219 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDY-----------TA 219 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHh-----------hh
Confidence 899999999999999999999999999999999999999999997 579999999999999999998 66
Q ss_pred EeeCceEEeecChhHHhhccCcchHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLET 107 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~ 107 (128)
++..|++++.|+.++++..+.....++
T Consensus 220 Ff~~G~LvE~g~T~~iF~~P~~~~Ted 246 (253)
T COG1117 220 FFYLGELVEFGPTDKIFTNPKHKRTED 246 (253)
T ss_pred hhcccEEEEEcCHHhhhcCccHHHHHH
Confidence 899999999999999998754333333
No 18
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=178.27 Aligned_cols=89 Identities=25% Similarity=0.456 Sum_probs=84.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+..+..+.++|.++.++ |.|+|++|||++++..+||| |
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dr-----------i 229 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK-----------I 229 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999864 99999999999999999987 8
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+|+..|+.++++...
T Consensus 230 ~vm~~G~ive~g~~~~i~~~p 250 (330)
T PRK15093 230 NVLYCGQTVETAPSKELVTTP 250 (330)
T ss_pred EEEECCEEEEECCHHHHHhCC
Confidence 899999999999999988653
No 19
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=1.8e-25 Score=176.52 Aligned_cols=88 Identities=47% Similarity=0.859 Sum_probs=83.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++|.|||++||+++++.++||| ++
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~-----------i~ 206 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR-----------LC 206 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999987 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 207 ~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 207 VLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEECCEEEEEcCHHHHHhh
Confidence 9999999999999988653
No 20
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=2.1e-25 Score=183.03 Aligned_cols=95 Identities=32% Similarity=0.530 Sum_probs=86.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||+|||+.++..++++|++++++|+|||++||+++++.++||| ++
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adr-----------ii 210 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDE-----------LV 210 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAF 109 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~ 109 (128)
+|++|+++..|++++++.. +.+...|
T Consensus 211 ~l~~G~iv~~G~~~ev~~~---~~l~~~~ 236 (402)
T PRK09536 211 LLADGRVRAAGPPADVLTA---DTLRAAF 236 (402)
T ss_pred EEECCEEEEecCHHHHhCc---HHHHHHh
Confidence 9999999999999998764 2444444
No 21
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.9e-25 Score=169.27 Aligned_cols=88 Identities=31% Similarity=0.456 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.+++++ |+|||++||+++++..+||+ +
T Consensus 139 ~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~-----------i 207 (239)
T cd03296 139 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR-----------V 207 (239)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+++++...
T Consensus 208 ~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 208 VVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred EEEECCeEEEecCHHHHhcC
Confidence 79999999999999888654
No 22
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.8e-25 Score=169.86 Aligned_cols=87 Identities=38% Similarity=0.646 Sum_probs=81.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++ |+|||++||+++++..+||| +
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~-----------v 207 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADR-----------I 207 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 208 ~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 208 AVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EEEECCeEEEecCHHHHcC
Confidence 7999999999999888764
No 23
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.7e-25 Score=177.65 Aligned_cols=90 Identities=27% Similarity=0.429 Sum_probs=84.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||+||+.+|++||+||||+|||+..+..++++|.++.+ .|.|+|++|||++++.++||| |
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adr-----------i 224 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHK-----------I 224 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 7999999999999999999999999999999999999999999975 499999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|.+|+|+..|++++++....
T Consensus 225 ~vm~~G~ive~g~~~~~~~~p~ 246 (326)
T PRK11022 225 IVMYAGQVVETGKAHDIFRAPR 246 (326)
T ss_pred EEEECCEEEEECCHHHHhhCCC
Confidence 8999999999999999987543
No 24
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=169.03 Aligned_cols=87 Identities=30% Similarity=0.602 Sum_probs=82.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|.|||++||+++++.++||| ++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 208 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR-----------GY 208 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999887799999999999999988887 78
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|++++++.
T Consensus 209 ~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 209 VLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEeCCEEEeeCCHHHHhc
Confidence 999999999999998874
No 25
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=5.9e-25 Score=168.25 Aligned_cols=89 Identities=30% Similarity=0.543 Sum_probs=83.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.+.++.++|.|||++||+++++..+||+ ++
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~-----------i~ 215 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADR-----------AI 215 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999989887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 216 ~l~~G~i~~~~~~~~~~~~~ 235 (250)
T PRK11264 216 FMDQGRIVEQGPAKALFADP 235 (250)
T ss_pred EEECCEEEEeCCHHHHhcCC
Confidence 99999999999998887543
No 26
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=3.4e-25 Score=177.41 Aligned_cols=90 Identities=29% Similarity=0.474 Sum_probs=84.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++||+||+.+|++||+||||+|||+..+..+.++|.++.++ |.|+|++|||++++..+||| +
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dr-----------i 232 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK-----------V 232 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999765 99999999999999989887 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+|+..|++++++....
T Consensus 233 ~vm~~G~ive~g~~~~i~~~p~ 254 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFYQPS 254 (330)
T ss_pred EEEECCEEEEECCHHHHHhCCC
Confidence 8999999999999999987643
No 27
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=174.29 Aligned_cols=87 Identities=30% Similarity=0.579 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.+.+++++|.|||++||+++++..+||| |+
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dr-----------i~ 215 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADY-----------VY 215 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|++++++.
T Consensus 216 ~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred EEECCEEEEECCHHHHHc
Confidence 999999999999999875
No 28
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=3.3e-25 Score=168.17 Aligned_cols=87 Identities=33% Similarity=0.583 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++|+|||++||+++++..+||+ ++
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~-----------i~ 214 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADR-----------VT 214 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|++++++.
T Consensus 215 ~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 215 VLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred EEeCCEEEeecCHHHhcc
Confidence 999999999999887764
No 29
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=5.9e-25 Score=166.91 Aligned_cols=89 Identities=27% Similarity=0.464 Sum_probs=83.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |+|||++||+++++..+||+ +
T Consensus 128 ~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~-----------i 196 (230)
T TIGR02770 128 GGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADE-----------V 196 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|++...|++++++...
T Consensus 197 ~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 197 AVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred EEEECCEEEEeCCHHHHHhCc
Confidence 799999999999999887643
No 30
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=5e-25 Score=178.75 Aligned_cols=89 Identities=33% Similarity=0.573 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|+++||||||+||||..+..+++.+.++.++ |+|||++||+++++..+||| |
T Consensus 132 GGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~dr-----------I 200 (363)
T TIGR01186 132 GGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDR-----------I 200 (363)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999754 99999999999999999887 8
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 201 ~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred EEEeCCEEEeeCCHHHHHhCc
Confidence 899999999999999988754
No 31
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.8e-25 Score=175.43 Aligned_cols=88 Identities=31% Similarity=0.580 Sum_probs=83.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++.|.|||++||+++++.++||| |+
T Consensus 168 gGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr-----------v~ 236 (305)
T PRK13651 168 GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR-----------TI 236 (305)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999888887 78
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 237 vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999998754
No 32
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=5.8e-25 Score=166.45 Aligned_cols=87 Identities=36% Similarity=0.616 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.+.++.+.|.|+|++||+++++.++||+ ++
T Consensus 136 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~-----------i~ 204 (232)
T cd03218 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDR-----------AY 204 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 205 ~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 205 IIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EEECCeEEEEeCHHHhhc
Confidence 999999999999887754
No 33
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=6.6e-25 Score=167.25 Aligned_cols=89 Identities=33% Similarity=0.576 Sum_probs=83.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.+++++|+|+|++||+++++..+||+ ++
T Consensus 139 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 207 (240)
T PRK09493 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASR-----------LI 207 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++.+..
T Consensus 208 ~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 208 FIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred EEECCEEEeeCCHHHHhcCC
Confidence 99999999999998887543
No 34
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.6e-25 Score=173.17 Aligned_cols=87 Identities=32% Similarity=0.591 Sum_probs=82.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++++.++.++ |.|||++||+++++..+||| |
T Consensus 147 gGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr-----------v 215 (287)
T PRK13637 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADR-----------I 215 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 99999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|++++.|++++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 216 IVMNKGKCELQGTPREVFK 234 (287)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 7999999999999998765
No 35
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=5.7e-25 Score=176.27 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=84.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++||+||+.+|++||+||||+|||+..+..+.++|.++.++ |.|+|++|||++++..+||| |
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dr-----------i 232 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDR-----------V 232 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999764 99999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|.+|+++..|++++++...
T Consensus 233 ~vl~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVYHNP 253 (331)
T ss_pred EEEECCEEEEEcCHHHHHcCC
Confidence 899999999999999988654
No 36
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.2e-25 Score=167.36 Aligned_cols=86 Identities=35% Similarity=0.629 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.++ |+|||++||+++++..+||+ +
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~-----------v 215 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADR-----------I 215 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHh
Q psy6322 80 GLMREGVLLAEESPASLM 97 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~ 97 (128)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 216 VGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEEECCEEEeecCHHHhh
Confidence 799999999999887753
No 37
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.7e-25 Score=175.56 Aligned_cols=89 Identities=20% Similarity=0.447 Sum_probs=84.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++||+||||+|||+..+..++++|.++.++ |.|+|++|||++.+.++||| |
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adr-----------v 225 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADE-----------V 225 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999765 99999999999999999887 8
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|+.++++...
T Consensus 226 ~vm~~G~ive~g~~~~~~~~p 246 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFNNP 246 (327)
T ss_pred EEEECCEEEEECCHHHHhcCC
Confidence 899999999999999998754
No 38
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-25 Score=177.92 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=84.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++|||++++..+||| +
T Consensus 137 gGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~-----------i 205 (356)
T PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADR-----------V 205 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999998765 99999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 206 ~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 206 VVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred EEEeCCEEEEECCHHHHHhCCc
Confidence 8999999999999999987643
No 39
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=5.6e-25 Score=178.30 Aligned_cols=89 Identities=33% Similarity=0.557 Sum_probs=84.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN--GKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~--g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++|||++++..+|||
T Consensus 140 gGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dr----------- 208 (362)
T TIGR03258 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADK----------- 208 (362)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCE-----------
Confidence 69999999999999999999999999999999999999999998765 79999999999999999988
Q ss_pred EEEeeCceEEeecChhHHhhcc
Q psy6322 79 IGLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 79 v~vl~~G~i~~~~~~~~l~~~~ 100 (128)
|++|++|+++..|++++++..+
T Consensus 209 i~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 209 AGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred EEEEECCEEEEEcCHHHHHhCc
Confidence 8899999999999999998764
No 40
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=6.3e-25 Score=165.10 Aligned_cols=86 Identities=29% Similarity=0.559 Sum_probs=80.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+.|.|+|++||+++++..+||+ ++
T Consensus 135 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 203 (222)
T cd03224 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR-----------AY 203 (222)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccE-----------EE
Confidence 6999999999999999999999999999999999999999999877789999999999999999887 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..|++++++
T Consensus 204 ~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 204 VLERGRVVLEGTAAELL 220 (222)
T ss_pred EeeCCeEEEeCCHHHHh
Confidence 99999999998877664
No 41
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.8e-25 Score=168.92 Aligned_cols=88 Identities=28% Similarity=0.503 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ |.|||++||+++++..+||| ++
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~-----------i~ 224 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDY-----------TG 224 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 79999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 225 ~l~~G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 225 FFLMGELIEFGQTRQIFHNP 244 (258)
T ss_pred EEECCEEEEeCCHHHHhcCC
Confidence 99999999999999887653
No 42
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.92 E-value=9.5e-25 Score=168.20 Aligned_cols=88 Identities=35% Similarity=0.609 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+.|+|||++||+++++..+||| ++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~-----------i~ 223 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH-----------VI 223 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 78
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 224 ~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred EEECCEEEEeCCHHHhhhC
Confidence 9999999999998887654
No 43
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.9e-25 Score=172.03 Aligned_cols=87 Identities=30% Similarity=0.574 Sum_probs=82.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.++.++|.|||++||+++++..+||+ ++
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~-----------v~ 216 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADD-----------VL 216 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999999987 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 217 ~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 217 VLEHGKLIKHASPKEIFS 234 (287)
T ss_pred EEECCEEEEeCCHHHHhc
Confidence 999999999999888764
No 44
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=7.2e-25 Score=177.06 Aligned_cols=89 Identities=31% Similarity=0.456 Sum_probs=84.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|+++||||||+|||+..+..+.+.|.++.++ |.|+|++|||++++..+||| |
T Consensus 139 gGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dr-----------i 207 (353)
T PRK10851 139 GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADR-----------V 207 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 208 ~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 208 VVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred EEEECCEEEEEcCHHHHHhCc
Confidence 899999999999999998764
No 45
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.5e-25 Score=172.53 Aligned_cols=88 Identities=34% Similarity=0.617 Sum_probs=82.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+++.++.++ |.|||++||+++++.++||| |
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~dr-----------v 216 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQ-----------I 216 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999764 99999999999999989887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 79999999999999887653
No 46
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.2e-25 Score=174.58 Aligned_cols=88 Identities=33% Similarity=0.581 Sum_probs=83.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++..+|.|||++||+++++.++||| ++
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr-----------i~ 247 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE-----------VI 247 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999877799999999999999888887 78
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999988754
No 47
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=7.4e-25 Score=184.15 Aligned_cols=90 Identities=29% Similarity=0.471 Sum_probs=85.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||.||+||+++|++||+||||++||+..+.+|.++|+++.+ .|.++|++|||+..++++||| |
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDr-----------v 225 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADR-----------V 225 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCe-----------E
Confidence 8999999999999999999999999999999999999999999984 499999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+||.+|+++..|++++++..+.
T Consensus 226 ~Vm~~G~iVE~G~~~~i~~~p~ 247 (539)
T COG1123 226 VVMYKGEIVETGPTEEILSNPQ 247 (539)
T ss_pred EEEECCEEEEecCHHHHHhccC
Confidence 7999999999999999998754
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8.8e-25 Score=165.75 Aligned_cols=87 Identities=33% Similarity=0.616 Sum_probs=81.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.+++++ |+|||++||+++++..+||+ +
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~-----------i 211 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDR-----------V 211 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 212 ~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 212 AVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EEEECCEEEEecCHHHHhc
Confidence 7999999999998877654
No 49
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.92 E-value=5.7e-25 Score=166.22 Aligned_cols=83 Identities=34% Similarity=0.573 Sum_probs=78.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.++ .|||++||+++++..+||+ ++
T Consensus 144 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~-----------i~ 211 (227)
T cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADR-----------TA 211 (227)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCE-----------EE
Confidence 69999999999999999999999999999999999999999999876 9999999999999888887 77
Q ss_pred EeeCceEEeecChhH
Q psy6322 81 LMREGVLLAEESPAS 95 (128)
Q Consensus 81 vl~~G~i~~~~~~~~ 95 (128)
+|++|+++..|++++
T Consensus 212 ~l~~G~i~~~g~~~~ 226 (227)
T cd03260 212 FLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEeCCEEEEecCccc
Confidence 999999999887654
No 50
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.4e-24 Score=168.90 Aligned_cols=89 Identities=34% Similarity=0.625 Sum_probs=83.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.++.++ |+|||++||+++++..+||+ +
T Consensus 163 ~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~-----------v 231 (269)
T cd03294 163 GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR-----------I 231 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999999754 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|+++++++..
T Consensus 232 ~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 232 AIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred EEEECCEEEEeCCHHHHHhCc
Confidence 799999999999999887643
No 51
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9e-25 Score=176.45 Aligned_cols=90 Identities=32% Similarity=0.512 Sum_probs=84.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++ |.|+|++|||++++..+||| |
T Consensus 139 gGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~-----------i 207 (351)
T PRK11432 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDT-----------V 207 (351)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999765 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 208 ~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 208 IVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred EEEECCEEEEEcCHHHHHhCCC
Confidence 8999999999999999987643
No 52
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=174.90 Aligned_cols=89 Identities=29% Similarity=0.605 Sum_probs=83.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|++|||||||+|||+.++..+++.|.++.++ |+|||++||+++++..+||| +
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~-----------v 211 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR-----------V 211 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999755 89999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++...
T Consensus 212 ~~l~~G~i~~~g~~~~~~~~~ 232 (343)
T PRK11153 212 AVIDAGRLVEQGTVSEVFSHP 232 (343)
T ss_pred EEEECCEEEEEcCHHHHHhCC
Confidence 799999999999999987653
No 53
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=169.36 Aligned_cols=88 Identities=30% Similarity=0.517 Sum_probs=82.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++||+++++..+||+ ++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~-----------i~ 207 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDA-----------VY 207 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 208 ~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 208 VLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999887653
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=1.4e-24 Score=165.18 Aligned_cols=98 Identities=39% Similarity=0.629 Sum_probs=85.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|+|++||+++++.. ||+ +
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~-----------i 202 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDR-----------L 202 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCE-----------E
Confidence 6999999999999999999999999999999999999999999874 58999999999998864 766 8
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
++|++|+++..++++++........+.+.|.
T Consensus 203 ~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T TIGR03864 203 VVLHRGRVLADGAAAELRGALGGADLEAAFL 233 (236)
T ss_pred EEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence 8999999999999988876533234555554
No 55
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=1.1e-24 Score=173.93 Aligned_cols=89 Identities=36% Similarity=0.556 Sum_probs=83.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+..+..+++.|.++.++ |.|+|++||+++++..+||| +
T Consensus 103 gGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~-----------i 171 (325)
T TIGR01187 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDR-----------I 171 (325)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998755 99999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++...
T Consensus 172 ~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 172 AIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred EEEECCEEEEEcCHHHHHhCC
Confidence 899999999999999988754
No 56
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=9.2e-25 Score=166.38 Aligned_cols=85 Identities=36% Similarity=0.622 Sum_probs=80.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |+|+|++||+++++.++||+ +
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~-----------v 216 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR-----------I 216 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHH
Q psy6322 80 GLMREGVLLAEESPASL 96 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l 96 (128)
++|++|+++..|+++++
T Consensus 217 ~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 217 VGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEECCEEEecCCHHHh
Confidence 79999999999988775
No 57
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.8e-25 Score=167.83 Aligned_cols=95 Identities=28% Similarity=0.544 Sum_probs=85.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|++..+ .|.|+|++.|+++.+.++|+| |
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~R-----------i 218 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADR-----------I 218 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhh-----------h
Confidence 8999999999999999999999999999999999999999999984 599999999999999999999 6
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
+-|++|+|+++|+++++-++ .+...|.
T Consensus 219 igl~~G~ivfDg~~~el~~~----~~~~iYg 245 (258)
T COG3638 219 IGLKAGRIVFDGPASELTDE----ALDEIYG 245 (258)
T ss_pred eEecCCcEEEeCChhhhhHH----HHHHHhc
Confidence 68999999999999885442 4455554
No 58
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=166.04 Aligned_cols=89 Identities=27% Similarity=0.538 Sum_probs=82.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ ++|||++||+++++.++||| ++
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~-----------i~ 218 (252)
T PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDR-----------TG 218 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 69999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|+++..|++++++..+.
T Consensus 219 ~l~~G~i~~~g~~~~~~~~~~ 239 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMFMNPK 239 (252)
T ss_pred EEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999876543
No 59
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.9e-25 Score=164.03 Aligned_cols=80 Identities=41% Similarity=0.598 Sum_probs=74.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++..+||+ +
T Consensus 133 gG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~-----------v 201 (213)
T cd03259 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR-----------I 201 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE-----------E
Confidence 6999999999999999999999999999999999999999999876 489999999999999988887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|+++..|
T Consensus 202 ~~l~~G~i~~~g 213 (213)
T cd03259 202 AVMNEGRIVQVG 213 (213)
T ss_pred EEEECCEEEecC
Confidence 799999998654
No 60
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=164.91 Aligned_cols=99 Identities=29% Similarity=0.542 Sum_probs=87.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++..+||+ +
T Consensus 134 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~-----------i 202 (241)
T PRK14250 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDY-----------T 202 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998764 99999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFLQ 111 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~~ 111 (128)
++|++|+++..+++++++.... ..+...|..
T Consensus 203 ~~l~~G~i~~~~~~~~~~~~~~-~~~~~~~~~ 233 (241)
T PRK14250 203 AFLNKGILVEYAKTYDFFTNPQ-NEVTKLFIQ 233 (241)
T ss_pred EEEeCCEEEEeCCHHHHhcCCC-cHHHHHHHh
Confidence 7999999999999998876432 234444443
No 61
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=166.45 Aligned_cols=88 Identities=30% Similarity=0.519 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. ++.|||++||+++++.++||| ++
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~-----------v~ 219 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDV-----------TA 219 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 479999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++....
T Consensus 220 ~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14242 220 FFYMGKLIEVGPTEQIFTRP 239 (253)
T ss_pred EEECCEEEEeCCHHHHHcCC
Confidence 99999999999998887643
No 62
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=166.25 Aligned_cols=87 Identities=29% Similarity=0.515 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.+++++ |.|||++||+++++..+||+ +
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~-----------i 224 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDR-----------I 224 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 225 ~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEEECCeEEecCCHHHHhh
Confidence 7999999999999888764
No 63
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=169.70 Aligned_cols=85 Identities=33% Similarity=0.532 Sum_probs=80.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.+.+++++|.|||++||+++++.++||| ++
T Consensus 141 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~-----------i~ 209 (274)
T PRK13647 141 YGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ-----------VI 209 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 78
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
+|++|++++.|+++.+
T Consensus 210 ~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 210 VLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEECCEEEEECCHHHh
Confidence 9999999999998654
No 64
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.2e-24 Score=163.99 Aligned_cols=85 Identities=42% Similarity=0.900 Sum_probs=79.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++ |.|||++||+++++..+||| +
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~-----------i 202 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR-----------V 202 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999876 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHH
Q psy6322 80 GLMREGVLLAEESPASL 96 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l 96 (128)
++|++|+++..++++++
T Consensus 203 ~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 203 AIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEeCCEEEEeCChHHc
Confidence 79999999998877653
No 65
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=9.5e-25 Score=172.37 Aligned_cols=87 Identities=34% Similarity=0.643 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+++|+++||||||+|||+.++..+++.+.++++ ++|||++||++++++++||| ++
T Consensus 136 ~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~-----------i~ 203 (301)
T TIGR03522 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDR-----------VI 203 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 79999999999999999988 78
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++...
T Consensus 204 ~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 204 IINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEECCEEEEeCCHHHHHHh
Confidence 9999999999999998653
No 66
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=165.79 Aligned_cols=88 Identities=26% Similarity=0.499 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. ++.|||++||+++++..+||| ++
T Consensus 149 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~-----------v~ 216 (250)
T PRK14245 149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDK-----------TA 216 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 579999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++.+..
T Consensus 217 ~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred EEECCEEEEECCHHHHhcCC
Confidence 99999999999999987643
No 67
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=2.1e-24 Score=165.33 Aligned_cols=87 Identities=31% Similarity=0.548 Sum_probs=81.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ +.|+|++||+++++..+||+ ++
T Consensus 147 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~-----------i~ 214 (247)
T TIGR00972 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDR-----------TA 214 (247)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999876 48999999999999989887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 215 ~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 215 FFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999888754
No 68
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=176.23 Aligned_cols=89 Identities=28% Similarity=0.458 Sum_probs=83.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+..+..+++.|.++.++ |.|+|++||+++++..+||| +
T Consensus 136 gGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~-----------i 204 (369)
T PRK11000 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK-----------I 204 (369)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998765 89999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 205 ~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 205 VVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred EEEECCEEEEEcCHHHHHhCc
Confidence 899999999999999988654
No 69
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.92 E-value=1.4e-24 Score=175.46 Aligned_cols=90 Identities=33% Similarity=0.527 Sum_probs=84.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++ |.|+|++||+++++..+||| +
T Consensus 137 gGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~-----------i 205 (353)
T TIGR03265 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADR-----------I 205 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999998765 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 206 ~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 206 VVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred EEEECCEEEEEcCHHHHHhCCC
Confidence 8999999999999999987643
No 70
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=165.92 Aligned_cols=88 Identities=28% Similarity=0.534 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++. ++.|||++||+++++..+||| ++
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~-----------i~ 220 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDR-----------TA 220 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 699999999999999999999999999999999999999999995 479999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++....
T Consensus 221 ~l~~G~i~~~g~~~~~~~~~ 240 (254)
T PRK14273 221 FFLNGCIEEESSTDELFFNP 240 (254)
T ss_pred EEECCEEEEeCCHHHHHhCC
Confidence 99999999999999887654
No 71
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.1e-24 Score=161.46 Aligned_cols=96 Identities=29% Similarity=0.550 Sum_probs=89.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++++|||||+|||+-...+...++.++++|+|.+++||+|.++..++++ |+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~-----------v~ 223 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSH-----------VI 223 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhh-----------eE
Confidence 8999999999999999999999999999999999999999999999999999999999999999988 66
Q ss_pred EeeCceEEeecChhHHhhccCcchHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLET 107 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~ 107 (128)
++++|.|..+|+|++++..+..+.+.+
T Consensus 224 fLh~G~iEE~G~P~qvf~nP~S~Rlkq 250 (256)
T COG4598 224 FLHQGKIEEEGPPEQVFGNPQSPRLKQ 250 (256)
T ss_pred EeecceecccCChHHHhcCCCCHHHHH
Confidence 999999999999999998765444544
No 72
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-24 Score=166.28 Aligned_cols=87 Identities=30% Similarity=0.525 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++||+|++.+|+++||||||+|||+.++..+.+.|.++.++|.|+|++||+++++.++||+ ++
T Consensus 141 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~-----------i~ 209 (255)
T PRK11231 141 GGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH-----------LV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 210 ~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 210 VLANGHVMAQGTPEEVMT 227 (255)
T ss_pred EEECCeEEEEcCHHHhcC
Confidence 999999999999888764
No 73
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=1.9e-24 Score=176.35 Aligned_cols=89 Identities=30% Similarity=0.601 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+..+..+++.|.++.++ |+|+|++|||++++.++||| |
T Consensus 167 gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr-----------I 235 (382)
T TIGR03415 167 GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNR-----------I 235 (382)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 99999999999999999987 8
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 236 ~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 236 AIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEECCEEEEecCHHHHhhCc
Confidence 899999999999999987653
No 74
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=3.2e-24 Score=164.63 Aligned_cols=88 Identities=32% Similarity=0.538 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||+++++..+||+ +
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~-----------~ 219 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQR-----------L 219 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..++++++...
T Consensus 220 ~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 220 LVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 79999999999999888754
No 75
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=169.89 Aligned_cols=88 Identities=32% Similarity=0.622 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+++.++.+ .|.|||++||+++++..+||| +
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr-----------i 216 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE-----------V 216 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999975 499999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred EEEECCEEEEECCHHHHHhC
Confidence 89999999999999887653
No 76
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=167.17 Aligned_cols=89 Identities=28% Similarity=0.514 Sum_probs=82.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ +.|||++||+++++..+||| ++
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~-----------v~ 234 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDR-----------TA 234 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 68999999999999988887 78
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|+++..|++++++....
T Consensus 235 ~l~~G~i~~~~~~~~~~~~~~ 255 (268)
T PRK14248 235 FFLNGDLVEYDQTEQIFTSPK 255 (268)
T ss_pred EEECCEEEEeCCHHHHHhCCC
Confidence 999999999999998876543
No 77
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=3.1e-24 Score=165.43 Aligned_cols=89 Identities=31% Similarity=0.529 Sum_probs=83.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++ |.|||++||+++++..+||+ +
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~-----------i 222 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHR-----------L 222 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999998765 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++...
T Consensus 223 ~~l~~g~i~~~~~~~~~~~~~ 243 (258)
T PRK11701 223 LVMKQGRVVESGLTDQVLDDP 243 (258)
T ss_pred EEEECCEEEEeCCHHHHhcCC
Confidence 799999999999999887643
No 78
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.7e-24 Score=169.54 Aligned_cols=88 Identities=39% Similarity=0.663 Sum_probs=82.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.+.++.++ |+||+++||+++++..+||| +
T Consensus 144 ~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dr-----------i 212 (283)
T PRK13636 144 FGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDN-----------V 212 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++++.|+++++...
T Consensus 213 ~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 213 FVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred EEEECCEEEEeCCHHHHhcC
Confidence 79999999999999888753
No 79
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=1.6e-24 Score=164.87 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=79.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-HhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-CAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++||+++++..+ ||+ +
T Consensus 147 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~-----------i 215 (243)
T TIGR01978 147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDY-----------V 215 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCe-----------E
Confidence 6999999999999999999999999999999999999999999987789999999999999887 677 7
Q ss_pred EEeeCceEEeecChhHHh
Q psy6322 80 GLMREGVLLAEESPASLM 97 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~ 97 (128)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 799999999999876543
No 80
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.7e-24 Score=163.31 Aligned_cols=88 Identities=25% Similarity=0.488 Sum_probs=82.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+|++.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||+++++..+||| +
T Consensus 132 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~-----------i 200 (232)
T PRK10771 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPR-----------S 200 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++...|++++++..
T Consensus 201 ~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 201 LVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred EEEECCEEEEeCCHHHHHhC
Confidence 79999999999999888754
No 81
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=2.6e-24 Score=164.00 Aligned_cols=86 Identities=27% Similarity=0.470 Sum_probs=80.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ ++|||++||+++++..+||+ ++
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~-----------i~ 213 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADK-----------VT 213 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 79999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 214 ~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 214 VLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred EEECCeEEeeCCHHHHhc
Confidence 999999999999888764
No 82
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=2.1e-24 Score=167.64 Aligned_cols=88 Identities=30% Similarity=0.497 Sum_probs=82.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++..+||+ +
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~-----------v 214 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADH-----------A 214 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 215 YIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred EEEECCEEEEeCCHHHHhcC
Confidence 79999999999999988764
No 83
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.91 E-value=1.1e-24 Score=165.67 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=79.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |+|||++||+++++.++||+ +
T Consensus 117 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~-----------v 185 (230)
T TIGR01184 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDR-----------V 185 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999998764 89999999999999989887 7
Q ss_pred EEeeCceEEeecChhHH
Q psy6322 80 GLMREGVLLAEESPASL 96 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l 96 (128)
++|++|+++..|++.++
T Consensus 186 ~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 186 VMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEeCCcEecccCceec
Confidence 79999999998877655
No 84
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=168.13 Aligned_cols=88 Identities=30% Similarity=0.556 Sum_probs=82.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.+++++|+|||++||+++++..+||+ ++
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~-----------i~ 216 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADF-----------VY 216 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 217 ~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999998887653
No 85
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.3e-24 Score=165.56 Aligned_cols=89 Identities=29% Similarity=0.480 Sum_probs=82.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. ++.|||++||+++++..+||| ++
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~-----------i~ 226 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDY-----------TA 226 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 478999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|+++..|+++++.....
T Consensus 227 ~l~~G~i~~~g~~~~~~~~~~ 247 (260)
T PRK10744 227 FMYLGELIEFGNTDTIFTKPA 247 (260)
T ss_pred EEECCEEEEeCCHHHHHhCCC
Confidence 999999999999998876543
No 86
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=1.7e-24 Score=161.60 Aligned_cols=77 Identities=38% Similarity=0.617 Sum_probs=73.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++|.|+|++||+++++..+||+ ++
T Consensus 129 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~-----------i~ 197 (205)
T cd03226 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDR-----------VL 197 (205)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 77
Q ss_pred EeeCceEE
Q psy6322 81 LMREGVLL 88 (128)
Q Consensus 81 vl~~G~i~ 88 (128)
+|++|+++
T Consensus 198 ~l~~G~iv 205 (205)
T cd03226 198 LLANGAIV 205 (205)
T ss_pred EEECCEEC
Confidence 99999874
No 87
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=168.28 Aligned_cols=87 Identities=32% Similarity=0.547 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++ |.|||++||+++++.++||| +
T Consensus 140 ~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr-----------v 208 (277)
T PRK13652 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY-----------I 208 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999989887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|++++++.
T Consensus 209 ~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 209 YVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEEECCeEEEECCHHHHhc
Confidence 7999999999999998865
No 88
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.91 E-value=3.3e-24 Score=166.42 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=83.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++..+||| +
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~-----------i 220 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQ-----------V 220 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|+++++....
T Consensus 221 ~~l~~G~i~~~~~~~~~~~~~ 241 (267)
T PRK15112 221 LVMHQGEVVERGSTADVLASP 241 (267)
T ss_pred EEEECCEEEecCCHHHHhcCC
Confidence 799999999999998887653
No 89
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.1e-24 Score=163.86 Aligned_cols=88 Identities=34% Similarity=0.631 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++ |.|||++||+++++..+||+ +
T Consensus 138 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~-----------i 206 (242)
T cd03295 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADR-----------I 206 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+++++...
T Consensus 207 ~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 207 AIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred EEEECCEEEEecCHHHHHcC
Confidence 79999999999998887654
No 90
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=3.8e-24 Score=164.30 Aligned_cols=89 Identities=26% Similarity=0.496 Sum_probs=83.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|+|++||+++++..+||| +
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~-----------i 217 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR-----------V 217 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999998765 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|+++++....
T Consensus 218 ~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 218 CFFDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred EEEECCEEEEeCCHHHHhcCC
Confidence 799999999999998887653
No 91
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=2.6e-24 Score=175.19 Aligned_cols=90 Identities=32% Similarity=0.525 Sum_probs=84.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++|||++++..+||| |
T Consensus 147 gGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDr-----------i 215 (375)
T PRK09452 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDR-----------I 215 (375)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999765 99999999999999999987 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 216 ~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 216 VVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred EEEECCEEEEEcCHHHHHhCcc
Confidence 8999999999999999987653
No 92
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.6e-24 Score=164.30 Aligned_cols=88 Identities=30% Similarity=0.500 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.+ ++|+|++||+++++..+||| ++
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~-----------v~ 217 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDY-----------TA 217 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 69999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 218 ~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14270 218 FFLMGDLIEFNKTEKIFLEP 237 (251)
T ss_pred EEECCeEEEeCCHHHHhcCC
Confidence 99999999999999887643
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.6e-24 Score=163.29 Aligned_cols=87 Identities=32% Similarity=0.637 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+++++..+||+ ++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~-----------v~ 208 (241)
T PRK10895 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCER-----------AY 208 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|++++++.
T Consensus 209 ~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 209 IVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEeCCeEEeeCCHHHHhc
Confidence 999999999999988765
No 94
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=3e-24 Score=166.40 Aligned_cols=88 Identities=31% Similarity=0.530 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.++ |+|||++||+++++..+||+ +
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~-----------i 221 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQR-----------V 221 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 222 ~~l~~G~i~~~g~~~~~~~~ 241 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLLSF 241 (265)
T ss_pred EEEeCCEEEEECCHHHHcCC
Confidence 79999999999999998763
No 95
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-24 Score=168.69 Aligned_cols=87 Identities=29% Similarity=0.518 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++ |+|||++||+++++.++||+ +
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~-----------i 221 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE-----------V 221 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|++++++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 7999999999999888764
No 96
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=2.6e-24 Score=162.85 Aligned_cols=85 Identities=33% Similarity=0.581 Sum_probs=80.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.+++++ |+|+|++||+++++..+||+ +
T Consensus 134 ~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~-----------v 202 (230)
T TIGR03410 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADR-----------Y 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998864 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHH
Q psy6322 80 GLMREGVLLAEESPASL 96 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l 96 (128)
++|++|+++..|+++++
T Consensus 203 ~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 203 YVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEECCEEEEECCHHHc
Confidence 79999999999998876
No 97
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.4e-24 Score=173.71 Aligned_cols=90 Identities=23% Similarity=0.429 Sum_probs=84.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+..+..+++.|.++.++ |.|+|++||+++++..+||| +
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~-----------i 199 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR-----------V 199 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 200 ~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 200 VVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEeCCEEEEecCHHHHHhCcc
Confidence 8999999999999999987653
No 98
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=165.07 Aligned_cols=88 Identities=33% Similarity=0.564 Sum_probs=82.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||+|+.+|+++||||||+|||+.++..+++.|.++.+ ++|+|++||+++++..+||| ++
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~-----------i~ 225 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQ-----------TA 225 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 79999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 226 ~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 226 FFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred EEECCEEEEECCHHHHhhCC
Confidence 99999999999999987653
No 99
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.3e-24 Score=175.86 Aligned_cols=89 Identities=30% Similarity=0.594 Sum_probs=83.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+..+..+++.|.++.+ .|+|||++||+++++..+||+ +
T Consensus 167 gGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr-----------i 235 (400)
T PRK10070 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR-----------I 235 (400)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999875 589999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 236 ~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 236 AIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred EEEECCEEEecCCHHHHHhCc
Confidence 899999999999999987653
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.91 E-value=2.5e-24 Score=160.80 Aligned_cols=80 Identities=41% Similarity=0.708 Sum_probs=75.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++|+|+|++||+++++..+||+ ++
T Consensus 129 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~-----------v~ 197 (208)
T cd03268 129 LGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADR-----------IG 197 (208)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999887799999999999999888887 77
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|+++..|
T Consensus 198 ~l~~g~i~~~g 208 (208)
T cd03268 198 IINKGKLIEEG 208 (208)
T ss_pred EEECCEEEecC
Confidence 99999998654
No 101
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=3.1e-24 Score=180.40 Aligned_cols=90 Identities=29% Similarity=0.541 Sum_probs=85.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|++|||||.||+..+..+.++|.++.++ |.|.+++|||++.++.+||| |
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~dr-----------v 500 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADR-----------V 500 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCce-----------E
Confidence 89999999999999999999999999999999999999999999866 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+|+..|+.+++++.+.
T Consensus 501 ~vm~~G~iVE~G~~~~v~~~p~ 522 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVFENPQ 522 (539)
T ss_pred EEEECCeEEEeCCHHHHhcCCC
Confidence 8999999999999999987654
No 102
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=165.08 Aligned_cols=99 Identities=27% Similarity=0.562 Sum_probs=86.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++..+||+ +
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~-----------i 223 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCER-----------I 223 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999975 489999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHHHHhH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFLQLSQ 114 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 114 (128)
++|++|+++..|+++++ .. ..+.+.|.....
T Consensus 224 ~~l~~g~i~~~g~~~~~-~~---~~~~~~~~~~~~ 254 (262)
T PRK09984 224 VALRQGHVFYDGSSQQF-DN---ERFDHLYRSINR 254 (262)
T ss_pred EEEECCEEEEeCCHHHh-cc---HHHHHHHhhhhc
Confidence 79999999999998875 22 345556555443
No 103
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.2e-24 Score=162.49 Aligned_cols=82 Identities=37% Similarity=0.623 Sum_probs=76.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++..+||+ +
T Consensus 134 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~-----------i 202 (220)
T cd03293 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR-----------V 202 (220)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999864 489999999999999888887 7
Q ss_pred EEee--CceEEeecCh
Q psy6322 80 GLMR--EGVLLAEESP 93 (128)
Q Consensus 80 ~vl~--~G~i~~~~~~ 93 (128)
++|+ +|+++..++.
T Consensus 203 ~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 203 VVLSARPGRIVAEVEV 218 (220)
T ss_pred EEEECCCCEEEEEEEe
Confidence 7999 7999987764
No 104
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=5.5e-24 Score=163.88 Aligned_cols=89 Identities=27% Similarity=0.433 Sum_probs=83.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.+.++.++ |.|||++||+++++..+||| +
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~-----------v 211 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADD-----------V 211 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++...
T Consensus 212 ~~l~~G~i~~~~~~~~~~~~~ 232 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLFNAP 232 (254)
T ss_pred EEEECCEEEEecCHHHHhhCC
Confidence 799999999999999887653
No 105
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.91 E-value=1.8e-24 Score=162.41 Aligned_cols=76 Identities=38% Similarity=0.596 Sum_probs=71.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++|.|||++||+++++..+||+ ++
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~-----------i~ 209 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHR-----------TL 209 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 210 ~l~~G~i 216 (216)
T TIGR00960 210 TLSRGRL 216 (216)
T ss_pred EEeCCcC
Confidence 9999875
No 106
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=163.88 Aligned_cols=89 Identities=26% Similarity=0.464 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ ++|||++||+++++..+||| ++
T Consensus 151 ~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~-----------i~ 218 (252)
T PRK14256 151 GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDY-----------TA 218 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999965 68999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|++...|++++++....
T Consensus 219 ~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 219 FFYMGDLVECGETKKIFTTPE 239 (252)
T ss_pred EEECCEEEEeCCHHHHHhCCC
Confidence 999999999999998876543
No 107
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.6e-24 Score=161.48 Aligned_cols=80 Identities=36% Similarity=0.556 Sum_probs=75.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++..+||+ +
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~-----------i 202 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR-----------I 202 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999988887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|+++..|
T Consensus 203 ~~l~~G~i~~~g 214 (214)
T cd03297 203 VVMEDGRLQYIG 214 (214)
T ss_pred EEEECCEEEecC
Confidence 799999998754
No 108
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=2.5e-24 Score=162.19 Aligned_cols=80 Identities=36% Similarity=0.572 Sum_probs=74.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++..+||+ +
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~-----------i 216 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADR-----------V 216 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999888887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|+++..|
T Consensus 217 ~~l~~G~i~~~g 228 (228)
T cd03257 217 AVMYAGKIVEEG 228 (228)
T ss_pred EEEeCCEEEecC
Confidence 799999997654
No 109
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.91 E-value=3.3e-24 Score=172.91 Aligned_cols=89 Identities=27% Similarity=0.465 Sum_probs=83.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+..+..+++.|.++.++ |.|+|++||+++++..+||+ +
T Consensus 134 gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~-----------i 202 (354)
T TIGR02142 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADR-----------V 202 (354)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|+++++...+
T Consensus 203 ~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 203 VVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEeCCEEEEECCHHHHhcCc
Confidence 799999999999999987654
No 110
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.91 E-value=4.2e-24 Score=161.86 Aligned_cols=86 Identities=33% Similarity=0.607 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+++++..+||+ ++
T Consensus 116 ~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~-----------i~ 184 (223)
T TIGR03771 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDR-----------VV 184 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999887 66
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
++ +|+++..|+++++..
T Consensus 185 ~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 185 LL-NGRVIADGTPQQLQD 201 (223)
T ss_pred EE-CCEEEeecCHHHhcC
Confidence 78 799999999888765
No 111
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-24 Score=163.09 Aligned_cols=87 Identities=29% Similarity=0.477 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ ++|||++||+++++..+||| ++
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~-----------i~ 219 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDY-----------VA 219 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 69999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 220 ~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999988754
No 112
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.8e-24 Score=162.94 Aligned_cols=87 Identities=28% Similarity=0.502 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. +|.|+|++||+++++..+||+ ++
T Consensus 149 gG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~-----------i~ 216 (250)
T PRK14247 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDY-----------VA 216 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 699999999999999999999999999999999999999999985 489999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++...|+++++...
T Consensus 217 ~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 217 FLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred EEECCeEEEECCHHHHHcC
Confidence 9999999999999888754
No 113
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.91 E-value=3.6e-24 Score=160.27 Aligned_cols=80 Identities=29% Similarity=0.514 Sum_probs=75.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.+++++ |.|||++||+++++..+||+ +
T Consensus 133 ~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~-----------i 201 (213)
T cd03301 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR-----------I 201 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999988887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|++++.|
T Consensus 202 ~~l~~g~~~~~g 213 (213)
T cd03301 202 AVMNDGQIQQIG 213 (213)
T ss_pred EEEECCEEEecC
Confidence 799999998764
No 114
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=166.26 Aligned_cols=87 Identities=32% Similarity=0.647 Sum_probs=82.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|.|||++||+++++..+||| ++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~-----------i~ 208 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADK-----------VY 208 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999976799999999999999888887 78
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|++++.|++++++.
T Consensus 209 ~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 209 VMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEECCEEEEeCCHHHHhc
Confidence 999999999999998865
No 115
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=5.1e-24 Score=178.87 Aligned_cols=89 Identities=29% Similarity=0.526 Sum_probs=83.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++++..+||| +
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~-----------i 496 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQ-----------V 496 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCe-----------E
Confidence 79999999999999999999999999999999999999999999865 89999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|+++++++..
T Consensus 497 ~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred EEEECCEEEEEcCHHHHhcCC
Confidence 799999999999999887643
No 116
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=162.74 Aligned_cols=87 Identities=31% Similarity=0.532 Sum_probs=81.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. ++.|||++||+++++.++||| ++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~-----------v~ 216 (250)
T PRK14240 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDK-----------TA 216 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 479999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..+++++++..
T Consensus 217 ~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 217 FFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999888754
No 117
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.4e-24 Score=162.92 Aligned_cols=88 Identities=26% Similarity=0.537 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. +|+|||++||+++++..+||| ++
T Consensus 152 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~-----------i~ 219 (251)
T PRK14244 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDR-----------VA 219 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCE-----------EE
Confidence 699999999999999999999999999999999999999999985 489999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 220 ~l~~G~i~~~~~~~~~~~~~ 239 (251)
T PRK14244 220 FFQSGRIVEYNTTQEIFKNP 239 (251)
T ss_pred EEECCEEEEeCCHHHHhcCC
Confidence 99999999999998887653
No 118
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.2e-24 Score=173.46 Aligned_cols=90 Identities=33% Similarity=0.530 Sum_probs=84.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+.+.+.++.+ .|.|+|++|||++++..+||| +
T Consensus 152 gGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDr-----------i 220 (377)
T PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGR-----------I 220 (377)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE-----------E
Confidence 7999999999999999999999999999999999999999999865 499999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 221 ~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 221 AIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred EEEeCCEEEEEcCHHHHHhCCc
Confidence 8999999999999999987643
No 119
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8e-24 Score=162.38 Aligned_cols=89 Identities=29% Similarity=0.486 Sum_probs=82.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. ++.|||++||+++++..+||+ ++
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~-----------i~ 217 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDW-----------TG 217 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCE-----------EE
Confidence 699999999999999999999999999999999999999999984 589999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|++...|+++++.....
T Consensus 218 ~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14249 218 FLLTGDLVEYGRTGEIFSRPR 238 (251)
T ss_pred EEeCCeEEEeCCHHHHHhCCC
Confidence 999999999999998876543
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.7e-24 Score=165.28 Aligned_cols=87 Identities=30% Similarity=0.502 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++..+||+ +
T Consensus 150 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~-----------i 218 (265)
T PRK10575 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDY-----------L 218 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 219 ~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 219 VALRGGEMIAQGTPAELMR 237 (265)
T ss_pred EEEECCeEEEecCHHHhcC
Confidence 7999999999999887764
No 121
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.8e-24 Score=169.47 Aligned_cols=90 Identities=31% Similarity=0.472 Sum_probs=86.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||++||||+.+|++||||||+++||...++.+...++++.++ |.|++++|||.+++.++||| |
T Consensus 140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladr-----------v 208 (345)
T COG1118 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADR-----------V 208 (345)
T ss_pred hHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcce-----------E
Confidence 89999999999999999999999999999999999999999999877 99999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
.+|++|+|...|++++++..+.
T Consensus 209 vvl~~G~Ieqvg~p~ev~~~P~ 230 (345)
T COG1118 209 VVLNQGRIEQVGPPDEVYDHPA 230 (345)
T ss_pred EEecCCeeeeeCCHHHHhcCCC
Confidence 7999999999999999988765
No 122
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.91 E-value=4.5e-24 Score=160.28 Aligned_cols=80 Identities=30% Similarity=0.644 Sum_probs=75.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+++++..+||| ++
T Consensus 139 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~-----------i~ 207 (218)
T cd03266 139 TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDR-----------VV 207 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 77
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|+++..|
T Consensus 208 ~l~~G~i~~~~ 218 (218)
T cd03266 208 VLHRGRVVYEG 218 (218)
T ss_pred EEECCEEeecC
Confidence 99999997653
No 123
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.2e-24 Score=166.10 Aligned_cols=87 Identities=33% Similarity=0.518 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++|.|||++||+++++. .||| ++
T Consensus 139 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~-----------v~ 206 (274)
T PRK13644 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADR-----------II 206 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCE-----------EE
Confidence 69999999999999999999999999999999999999999999877999999999999884 5776 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 207 ~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 207 VMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999887653
No 124
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.4e-24 Score=166.39 Aligned_cols=87 Identities=30% Similarity=0.506 Sum_probs=80.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.+.+++++ |+|||++||+++++. .||| +
T Consensus 143 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dr-----------i 210 (279)
T PRK13650 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDR-----------V 210 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCE-----------E
Confidence 69999999999999999999999999999999999999999999865 999999999999884 6776 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 211 ~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 211 LVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEECCEEEEECCHHHHHcC
Confidence 89999999999999887754
No 125
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.5e-24 Score=182.22 Aligned_cols=89 Identities=22% Similarity=0.415 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..++++|.+++++ |.|||++|||++++..+||| |
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr-----------i 534 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHR-----------V 534 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999765 99999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++...
T Consensus 535 ~vl~~G~iv~~g~~~~i~~~p 555 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVFENP 555 (623)
T ss_pred EEEECCEEEEecCHHHHhcCC
Confidence 799999999999999988653
No 126
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=8.8e-24 Score=159.49 Aligned_cols=94 Identities=37% Similarity=0.640 Sum_probs=83.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++||||++.+|+++||||||+|||+.++..+++.+.++.++|.|+|++||+++++..+||| ++
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 195 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADH-----------IG 195 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAFLQ 111 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~~ 111 (128)
+|++|++...|++.+ . ..+.+.|.+
T Consensus 196 ~l~~g~i~~~~~~~~---~---~~~~~~~~~ 220 (223)
T TIGR03740 196 IISEGVLGYQGKINK---S---ENLEKLFVE 220 (223)
T ss_pred EEeCCEEEEecChhh---c---ccHHHHHHH
Confidence 999999999998754 1 345555554
No 127
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=6.5e-24 Score=154.23 Aligned_cols=78 Identities=27% Similarity=0.521 Sum_probs=73.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||+++||||+.+|+++||||||+|||+.++..+.+.++++.++|.|+|++||+++++.++||+ ++
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~-----------~~ 153 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADR-----------VT 153 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 77
Q ss_pred EeeCceEEe
Q psy6322 81 LMREGVLLA 89 (128)
Q Consensus 81 vl~~G~i~~ 89 (128)
+|++|++++
T Consensus 154 ~l~~g~i~~ 162 (163)
T cd03216 154 VLRDGRVVG 162 (163)
T ss_pred EEECCEEEe
Confidence 999999875
No 128
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=7.2e-24 Score=161.89 Aligned_cols=85 Identities=22% Similarity=0.385 Sum_probs=78.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-HhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-CAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++++.|+|||++||+++++..+ ||+ +
T Consensus 148 ~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~-----------i 216 (248)
T PRK09580 148 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDY-----------V 216 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCE-----------E
Confidence 6999999999999999999999999999999999999999999877789999999999988776 666 7
Q ss_pred EEeeCceEEeecChhHH
Q psy6322 80 GLMREGVLLAEESPASL 96 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l 96 (128)
++|++|+++..|+++.+
T Consensus 217 ~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 217 HVLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEEECCeEEEeCCHHHH
Confidence 79999999999987643
No 129
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=4.3e-24 Score=165.24 Aligned_cols=88 Identities=31% Similarity=0.601 Sum_probs=84.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
.||+||+.+..+++|+|+++|||||||||||++.+.+.+.+.+++++|.|||+|||.|+.++++||+ +.
T Consensus 133 KGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~-----------ll 201 (300)
T COG4152 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDR-----------LL 201 (300)
T ss_pred hhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhh-----------hh
Confidence 4999999999999999999999999999999999999999999999999999999999999999999 45
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+.+.+|+.+++.+.
T Consensus 202 mL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 202 MLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred eecCCceEEeccHHHHHHh
Confidence 9999999999999999874
No 130
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.3e-24 Score=162.05 Aligned_cols=87 Identities=31% Similarity=0.508 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.. |+|+|++||+++++..+||+ ++
T Consensus 145 ~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~-----------i~ 212 (246)
T PRK14269 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADY-----------TA 212 (246)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcE-----------EE
Confidence 6999999999999999999999999999999999999999999864 89999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 213 ~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 213 FFHLGELIEFGESKEFFEN 231 (246)
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999988764
No 131
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.6e-24 Score=161.71 Aligned_cols=88 Identities=31% Similarity=0.510 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++. +++|+|++||+++++..+||| ++
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~-----------i~ 218 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDT-----------TS 218 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCE-----------EE
Confidence 699999999999999999999999999999999999999999986 479999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 219 ~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14272 219 FFLVGDLVEHGPTDQLFTNP 238 (252)
T ss_pred EEECCEEEEeCCHHHHHhCc
Confidence 99999999999999887643
No 132
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.2e-24 Score=163.93 Aligned_cols=87 Identities=25% Similarity=0.508 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||+ ++
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~-----------v~ 233 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQR-----------TA 233 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 78999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 234 ~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 234 FFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999888754
No 133
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=6.2e-24 Score=163.60 Aligned_cols=87 Identities=30% Similarity=0.489 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++||+++++.++||+ ++
T Consensus 140 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 208 (256)
T TIGR03873 140 GGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDH-----------VV 208 (256)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987789999999999999989887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 209 ~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 209 VLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEeCCCEEEecCHHHhhC
Confidence 999999999999888754
No 134
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=161.01 Aligned_cols=87 Identities=31% Similarity=0.541 Sum_probs=81.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. ++.|||++||+++++..+||| ++
T Consensus 150 ~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~-----------i~ 217 (251)
T PRK14251 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQ-----------TA 217 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCE-----------EE
Confidence 699999999999999999999999999999999999999999985 479999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 218 ~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999888754
No 135
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=161.27 Aligned_cols=87 Identities=29% Similarity=0.570 Sum_probs=81.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||| ++
T Consensus 148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~-----------i~ 215 (249)
T PRK14253 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDR-----------TA 215 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 58999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 216 ~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 216 FFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred EEECCEEEEeCCHHHHHcC
Confidence 9999999999998887654
No 136
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=163.84 Aligned_cols=88 Identities=26% Similarity=0.503 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++++..+||| ++
T Consensus 170 gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~-----------i~ 237 (271)
T PRK14238 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDK-----------TA 237 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 79999999999999888887 78
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++....
T Consensus 238 ~l~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 238 FFLNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred EEECCEEEEeCCHHHHHcCC
Confidence 99999999999999887653
No 137
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=5.1e-24 Score=159.63 Aligned_cols=78 Identities=37% Similarity=0.628 Sum_probs=72.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++|.|+|++||+++++.++||+ ++
T Consensus 135 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~-----------i~ 203 (213)
T cd03235 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-----------VL 203 (213)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999999887 77
Q ss_pred EeeCceEEee
Q psy6322 81 LMREGVLLAE 90 (128)
Q Consensus 81 vl~~G~i~~~ 90 (128)
+|++| +++.
T Consensus 204 ~l~~~-~~~~ 212 (213)
T cd03235 204 LLNRT-VVAS 212 (213)
T ss_pred EEcCc-Eeec
Confidence 89876 4443
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6e-24 Score=159.05 Aligned_cols=80 Identities=31% Similarity=0.585 Sum_probs=74.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++ |.|+|++||+++++..+||| +
T Consensus 131 ~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~-----------i 199 (211)
T cd03298 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR-----------V 199 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE-----------E
Confidence 69999999999999999999999999999999999999999998754 89999999999999998887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|+++..|
T Consensus 200 ~~l~~G~i~~~~ 211 (211)
T cd03298 200 VFLDNGRIAAQG 211 (211)
T ss_pred EEEECCEEeecC
Confidence 799999997653
No 139
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.2e-24 Score=161.39 Aligned_cols=86 Identities=35% Similarity=0.599 Sum_probs=80.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|+|+|++||+++++..+||+ ++
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~-----------i~ 212 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASR-----------VV 212 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..|+++++.
T Consensus 213 ~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 213 YMENGHIVEQGDASCFT 229 (242)
T ss_pred EEECCEEEEeCCHHHhc
Confidence 99999999999887754
No 140
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=6.7e-24 Score=159.51 Aligned_cols=84 Identities=45% Similarity=0.880 Sum_probs=78.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+++++..+||+ ++
T Consensus 136 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~-----------i~ 203 (220)
T cd03263 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDR-----------IA 203 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 59999999999999888887 77
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
+|++|+++..|+++++
T Consensus 204 ~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 204 IMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCEEEecCCHHHc
Confidence 9999999999887654
No 141
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1.3e-23 Score=156.93 Aligned_cols=89 Identities=28% Similarity=0.523 Sum_probs=84.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||++||+|+++-++++|||||++|||.-+..+..++..++.+ +.|++|+||.++++.+++++ +
T Consensus 132 GGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~-----------~ 200 (231)
T COG3840 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR-----------V 200 (231)
T ss_pred chHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc-----------e
Confidence 89999999999999999999999999999999999999999999854 99999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
+++++|||.+.|+.++++...
T Consensus 201 ~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 201 VFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred EEEeCCEEEeeccHHHHhccC
Confidence 799999999999999988754
No 142
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=8.4e-24 Score=158.16 Aligned_cols=80 Identities=38% Similarity=0.650 Sum_probs=75.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.++++.++|.|||++||+++++..+||+ ++
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~-----------i~ 199 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDR-----------VL 199 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhE-----------EE
Confidence 6999999999999999999999999999999999999999999877789999999999999989887 77
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|+++..|
T Consensus 200 ~l~~g~i~~~~ 210 (210)
T cd03269 200 LLNKGRAVLYG 210 (210)
T ss_pred EEeCCEEEecC
Confidence 99999997653
No 143
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.6e-24 Score=163.53 Aligned_cols=87 Identities=28% Similarity=0.477 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|+|++||+++++..+||| +
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~-----------i 214 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASH-----------L 214 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 215 ~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 215 IALREGKIVAQGAPKEIVT 233 (265)
T ss_pred EEEECCEEEEeCCHHHHhh
Confidence 7999999999999888764
No 144
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=168.84 Aligned_cols=89 Identities=26% Similarity=0.502 Sum_probs=83.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.+...+.+.|.++.+ +.|+|++||+++++..+||| |+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Dr-----------ii 295 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDE-----------TV 295 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 69999999999999888887 78
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|+++..|++++++..+.
T Consensus 296 vl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 296 FFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred EEECCEEEEeCCHHHHhcCCC
Confidence 999999999999999987543
No 145
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=5.1e-24 Score=163.96 Aligned_cols=96 Identities=31% Similarity=0.521 Sum_probs=89.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+|+|+|+.|||||+.+|++|+||||.+|+.|.....+.+.|++++++ |.||+++.|||+.+..+||| |
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dr-----------i 220 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADR-----------I 220 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccE-----------E
Confidence 59999999999999999999999999999999999999999999875 79999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
+||+.|+++++|+|+++.++ +.+.++|.
T Consensus 221 ~Vl~~G~~IAeG~P~eV~~d---p~VieAYL 248 (250)
T COG0411 221 VVLNYGEVIAEGTPEEVRNN---PRVIEAYL 248 (250)
T ss_pred EeccCCcCcccCCHHHHhcC---HHhHHHhc
Confidence 79999999999999999876 45666664
No 146
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.91 E-value=1.2e-23 Score=161.68 Aligned_cols=87 Identities=28% Similarity=0.464 Sum_probs=81.2
Q ss_pred ChHhHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVALLH-------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al~~-------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
||||||++||+||+. +|+++||||||+|||+.++..+.+.+.++.++|.|||++||+++++..+||+
T Consensus 129 ~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~------ 202 (248)
T PRK03695 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADR------ 202 (248)
T ss_pred HHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE------
Confidence 699999999999998 7799999999999999999999999999977799999999999999988887
Q ss_pred hhcceEEEeeCceEEeecChhHHhh
Q psy6322 74 RQAHIIGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 74 ~~~~~v~vl~~G~i~~~~~~~~l~~ 98 (128)
+++|++|+++..|+++++..
T Consensus 203 -----i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 203 -----VWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred -----EEEEECCEEEEECCHHHHhC
Confidence 77999999999999887764
No 147
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=162.21 Aligned_cols=89 Identities=27% Similarity=0.447 Sum_probs=83.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||+|+.+|+++||||||+|||+.++..+.+.+.+++. .|.|+|++||+++++.++||| +
T Consensus 153 gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~-----------i 221 (261)
T PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDF-----------T 221 (261)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCE-----------E
Confidence 6999999999999999999999999999999999999999999864 489999999999999999887 7
Q ss_pred EEeeC-----ceEEeecChhHHhhcc
Q psy6322 80 GLMRE-----GVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~-----G~i~~~~~~~~l~~~~ 100 (128)
++|++ |+++..|+++++++.+
T Consensus 222 ~~l~~~~~~~G~i~~~~~~~~~~~~~ 247 (261)
T PRK14258 222 AFFKGNENRIGQLVEFGLTKKIFNSP 247 (261)
T ss_pred EEEccCCCcCceEEEeCCHHHHHhCC
Confidence 79999 9999999999987653
No 148
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=163.50 Aligned_cols=87 Identities=32% Similarity=0.511 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ +.|+|++||+++++.++||| ++
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~-----------i~ 238 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDY-----------TA 238 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999965 79999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 239 ~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 239 FMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred EEECCEEEecCCHHHHhcC
Confidence 9999999999999888754
No 149
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=5.4e-24 Score=159.10 Aligned_cols=75 Identities=36% Similarity=0.659 Sum_probs=70.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+..+..+++.|.+++++|.|||++||+++++..+||+ ++
T Consensus 137 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~-----------i~ 205 (211)
T cd03225 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADR-----------VI 205 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999998887 77
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|+
T Consensus 206 ~l~~G~ 211 (211)
T cd03225 206 VLEDGK 211 (211)
T ss_pred EEeCCC
Confidence 898884
No 150
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=8.3e-24 Score=160.76 Aligned_cols=86 Identities=34% Similarity=0.575 Sum_probs=79.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. +|+|||++||+++++. .||+ ++
T Consensus 141 gG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~-----------v~ 207 (237)
T cd03252 141 GGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADR-----------II 207 (237)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCE-----------EE
Confidence 699999999999999999999999999999999999999999986 4899999999999885 4766 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 208 ~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 208 VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred EEECCEEEEEcCHHHHHhc
Confidence 9999999999999888754
No 151
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=160.64 Aligned_cols=88 Identities=32% Similarity=0.540 Sum_probs=81.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++++.++||| ++
T Consensus 151 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~-----------i~ 218 (252)
T PRK14255 151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDK-----------TA 218 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 58999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++.+++...
T Consensus 219 ~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 219 FFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred EEECCEEEEeCCHHHHhcCC
Confidence 99999999999998887643
No 152
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=1.1e-23 Score=176.75 Aligned_cols=88 Identities=32% Similarity=0.564 Sum_probs=82.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.+.+++++ |+|||++||+++++..+||| |
T Consensus 159 gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr-----------i 227 (529)
T PRK15134 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR-----------V 227 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE-----------E
Confidence 79999999999999999999999999999999999999999999765 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 228 ~~l~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 228 AVMQNGRCVEQNRAATLFSA 247 (529)
T ss_pred EEEECCEEEEeCCHHHHhhC
Confidence 79999999999999888654
No 153
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=9.1e-24 Score=159.44 Aligned_cols=96 Identities=32% Similarity=0.638 Sum_probs=89.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+|+|+.|||||+.+|++++|||||+|+||.+...|.+++..++++|..|+++-|+..|...+||| .+
T Consensus 142 GGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dR-----------aY 210 (243)
T COG1137 142 GGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDR-----------AY 210 (243)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhhe-----------EE
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 66
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
++++|+++++|+|+++.+. +.+++.|.
T Consensus 211 Ii~~G~vla~G~p~ei~~n---~~Vr~~YL 237 (243)
T COG1137 211 IISDGKVLAEGSPEEIVNN---EDVRRVYL 237 (243)
T ss_pred EEecCeEEecCCHHHHhcC---hhhhhhcc
Confidence 9999999999999999876 34566654
No 154
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=1.3e-23 Score=162.43 Aligned_cols=87 Identities=32% Similarity=0.522 Sum_probs=81.2
Q ss_pred ChHhHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVALL------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al~------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
||||||++||+||+ .+|+++||||||+|||+.++..+.+.|.++. +.|.|||++||+++++..+||+
T Consensus 137 gGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~------ 210 (258)
T PRK13548 137 GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR------ 210 (258)
T ss_pred HHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCE------
Confidence 69999999999999 5999999999999999999999999999987 6699999999999999988887
Q ss_pred hhcceEEEeeCceEEeecChhHHhh
Q psy6322 74 RQAHIIGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 74 ~~~~~v~vl~~G~i~~~~~~~~l~~ 98 (128)
+++|++|+++..|+++++..
T Consensus 211 -----i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 211 -----IVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred -----EEEEECCEEEeeCCHHHHhC
Confidence 77999999999999887764
No 155
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=1.1e-23 Score=160.17 Aligned_cols=86 Identities=33% Similarity=0.548 Sum_probs=80.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++. +|+|||++||+++++. .||+ ++
T Consensus 142 ~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~-----------v~ 208 (238)
T cd03249 142 GGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADL-----------IA 208 (238)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCE-----------EE
Confidence 699999999999999999999999999999999999999999987 7999999999999986 6877 78
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..++.+++...
T Consensus 209 ~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 209 VLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEECCEEEEeCCHHHHhhc
Confidence 9999999999988887654
No 156
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.90 E-value=1.1e-23 Score=161.30 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=78.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-HhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-CAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.++|.|||++||+++++..+ ||+ +
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~-----------i 222 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDY-----------V 222 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCE-----------E
Confidence 6999999999999999999999999999999999999999999887799999999999998776 666 7
Q ss_pred EEeeCceEEeecChh
Q psy6322 80 GLMREGVLLAEESPA 94 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~ 94 (128)
++|++|+++..|+++
T Consensus 223 ~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 223 HVMQNGKIIKTGDAE 237 (252)
T ss_pred EEEeCCEEEEecChh
Confidence 899999999999887
No 157
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=163.80 Aligned_cols=88 Identities=36% Similarity=0.547 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.+.++.. +.|||++||+++++..+||| ++
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~-----------i~ 252 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDY-----------TM 252 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 68999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++....
T Consensus 253 ~L~~G~i~~~g~~~~~~~~~ 272 (286)
T PRK14275 253 FFYEGVLVEHAPTAQLFTNP 272 (286)
T ss_pred EEECCEEEEeCCHHHHHhCC
Confidence 99999999999999887643
No 158
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=162.00 Aligned_cols=88 Identities=27% Similarity=0.488 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||+++++.++||| ++
T Consensus 154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~-----------v~ 221 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDM-----------TA 221 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 58999999999999999987 77
Q ss_pred Eee---------CceEEeecChhHHhhcc
Q psy6322 81 LMR---------EGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~---------~G~i~~~~~~~~l~~~~ 100 (128)
+|+ +|+++..|+++++....
T Consensus 222 ~l~~~~~~~~~~~g~i~~~~~~~~~~~~~ 250 (264)
T PRK14243 222 FFNVELTEGGGRYGYLVEFDRTEKIFNSP 250 (264)
T ss_pred EEecccccccccCceEEEeCCHHHHHhCC
Confidence 898 89999999999987654
No 159
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=161.10 Aligned_cols=87 Identities=30% Similarity=0.542 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. +++|||++||+++++.++||| ++
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~-----------i~ 218 (258)
T PRK14241 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQ-----------TA 218 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 468999999999999989887 66
Q ss_pred Eee------CceEEeecChhHHhhc
Q psy6322 81 LMR------EGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~------~G~i~~~~~~~~l~~~ 99 (128)
+|+ +|+++..|++++++..
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred EEecccCCCCceEEecCCHHHHHhC
Confidence 886 8999999999988754
No 160
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.2e-24 Score=177.52 Aligned_cols=85 Identities=32% Similarity=0.512 Sum_probs=80.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++++.+++++|+|||++|||++++.++||| ++
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~-----------v~ 476 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR-----------VL 476 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999988 77
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
+|++|+++..|+++++
T Consensus 477 ~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 477 VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCEEEEEeccccC
Confidence 9999999999987765
No 161
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.5e-24 Score=157.95 Aligned_cols=79 Identities=38% Similarity=0.709 Sum_probs=73.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++++ +.|+|++||+++++.++||| ++
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~-----------i~ 200 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQ-----------VA 200 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999875 59999999999999888887 77
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|+++..|
T Consensus 201 ~l~~g~i~~~g 211 (211)
T cd03264 201 VLNKGKLVFEG 211 (211)
T ss_pred EEECCEEEecC
Confidence 99999998654
No 162
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.90 E-value=1.2e-23 Score=159.70 Aligned_cols=80 Identities=26% Similarity=0.441 Sum_probs=75.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++|.|||++||+++++..+||+ ++
T Consensus 145 gG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 213 (224)
T cd03220 145 SGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDR-----------AL 213 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999887789999999999999888887 77
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|+++..|
T Consensus 214 ~l~~G~i~~~g 224 (224)
T cd03220 214 VLEKGKIRFDG 224 (224)
T ss_pred EEECCEEEecC
Confidence 99999998754
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.2e-23 Score=158.50 Aligned_cols=88 Identities=34% Similarity=0.530 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+||+||++|||||+.+|+++||||||+|||+.++..+++.+.++.++ |.|||++||+++++..+||| +
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~-----------i 201 (232)
T cd03300 133 GGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR-----------I 201 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++...|+++++...
T Consensus 202 ~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 202 AVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred EEEECCEEEecCCHHHHHhC
Confidence 79999999999988877654
No 164
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=1.1e-23 Score=175.17 Aligned_cols=87 Identities=28% Similarity=0.452 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++||+++++.++||+ ++
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~-----------v~ 206 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQF-----------AG 206 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 207 ~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 207 VLADCTLAETGEREEILQ 224 (490)
T ss_pred EEECCEEEEeCCHHHHhc
Confidence 999999999999887764
No 165
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.1e-23 Score=159.02 Aligned_cols=88 Identities=35% Similarity=0.585 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|++++|||||+|||+.++..+++.+.++..+ |.|+|++||+++++..+||+ +
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~-----------i 200 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK-----------V 200 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998755 99999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+++++...
T Consensus 201 ~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 201 AIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred EEEECCEEEEecCHHHHHhC
Confidence 79999999999998887654
No 166
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=8.3e-24 Score=158.41 Aligned_cols=75 Identities=36% Similarity=0.626 Sum_probs=71.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|++||+++++..+||+ ++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~-----------i~ 208 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHR-----------VI 208 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999999887 77
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|+
T Consensus 209 ~l~~G~ 214 (214)
T TIGR02673 209 ILDDGR 214 (214)
T ss_pred EecCCC
Confidence 899885
No 167
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=162.92 Aligned_cols=86 Identities=29% Similarity=0.522 Sum_probs=79.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++|.|||++||+++++..+||+ ++
T Consensus 145 gG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~-----------v~ 213 (272)
T PRK15056 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDY-----------TV 213 (272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999887 64
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
++ +|+++..|++++++.
T Consensus 214 ~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 214 MV-KGTVLASGPTETTFT 230 (272)
T ss_pred EE-CCEEEeecCHHhccC
Confidence 66 899999999888764
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=159.43 Aligned_cols=87 Identities=37% Similarity=0.575 Sum_probs=81.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.+ ++|+|++||+++++..+||+ ++
T Consensus 149 ~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~-----------i~ 216 (250)
T PRK14262 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADY-----------IA 216 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 79999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 217 ~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 217 FMYRGELIEYGPTREIVER 235 (250)
T ss_pred EEECCEEEEecCHHHHHhC
Confidence 9999999999999888754
No 169
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=162.74 Aligned_cols=88 Identities=27% Similarity=0.512 Sum_probs=81.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||| ++
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~-----------i~ 231 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADW-----------TA 231 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 79999999999999999887 77
Q ss_pred Eee---------CceEEeecChhHHhhcc
Q psy6322 81 LMR---------EGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~---------~G~i~~~~~~~~l~~~~ 100 (128)
+|+ +|+++..|++++++...
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~~~~~~~ 260 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTEQMFGSP 260 (274)
T ss_pred EEecccccccccCceEEEeCCHHHHHhCC
Confidence 887 89999999999987653
No 170
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-23 Score=163.82 Aligned_cols=87 Identities=33% Similarity=0.573 Sum_probs=80.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++ |.|||++||+++++.. ||| +
T Consensus 143 ~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~-----------i 210 (279)
T PRK13635 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADR-----------V 210 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCE-----------E
Confidence 69999999999999999999999999999999999999999999865 8999999999998853 766 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++++.|+++++...
T Consensus 211 ~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 211 IVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 89999999999998887653
No 171
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=3.3e-23 Score=161.35 Aligned_cols=88 Identities=23% Similarity=0.472 Sum_probs=82.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++||+||+.+|++|||||||+|||+..+..+.+.+.++.+.|.|+|++||+++++..+||+ ++
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~-----------i~ 214 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTK-----------IA 214 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++...|+++++...
T Consensus 215 ~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 215 WIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred EEECCEEEEeCCHHHHHHH
Confidence 9999999999999888754
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.90 E-value=1.6e-23 Score=153.88 Aligned_cols=79 Identities=33% Similarity=0.550 Sum_probs=74.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||||++.+|+++||||||+|||+.++..+.+.|.++.++ +.|+|++||+++++..+||+ +
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~-----------~ 168 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR-----------V 168 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999766 89999999999999888887 7
Q ss_pred EEeeCceEEee
Q psy6322 80 GLMREGVLLAE 90 (128)
Q Consensus 80 ~vl~~G~i~~~ 90 (128)
++|++|++...
T Consensus 169 ~~l~~g~i~~~ 179 (180)
T cd03214 169 ILLKDGRIVAQ 179 (180)
T ss_pred EEEECCEEEec
Confidence 79999998764
No 173
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-23 Score=164.04 Aligned_cols=87 Identities=33% Similarity=0.594 Sum_probs=80.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. ||| +
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~-----------v 214 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADR-----------I 214 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCE-----------E
Confidence 6999999999999999999999999999999999999999999975 49999999999998865 766 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+++++...
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 215 IVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred EEEECCEEEEecCHHHHhcC
Confidence 89999999999999988653
No 174
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=9.4e-24 Score=158.50 Aligned_cols=75 Identities=36% Similarity=0.586 Sum_probs=70.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|+|||++||+++++. +||+ +
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~-----------v 210 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADR-----------I 210 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcE-----------E
Confidence 6999999999999999999999999999999999999999999976 5899999999999986 8877 7
Q ss_pred EEeeCceE
Q psy6322 80 GLMREGVL 87 (128)
Q Consensus 80 ~vl~~G~i 87 (128)
++|++|++
T Consensus 211 ~~l~~G~i 218 (218)
T cd03255 211 IELRDGKI 218 (218)
T ss_pred EEeeCCcC
Confidence 79999974
No 175
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=159.48 Aligned_cols=87 Identities=31% Similarity=0.546 Sum_probs=81.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ ++|||++||+++++..+||+ ++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~-----------v~ 219 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDY-----------TG 219 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 68999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 220 ~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 220 FMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred EEECCEEEEcCCHHHHHhC
Confidence 9999999999999888754
No 176
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=162.54 Aligned_cols=77 Identities=35% Similarity=0.576 Sum_probs=71.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|+|||||++||..++..+.+.+.++.+ .++||++||||++|+-.++|| |
T Consensus 133 GGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdR-----------i 201 (248)
T COG1116 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADR-----------V 201 (248)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCE-----------E
Confidence 8999999999999999999999999999999999999999999874 499999999999999999988 6
Q ss_pred EEeeC--ceEE
Q psy6322 80 GLMRE--GVLL 88 (128)
Q Consensus 80 ~vl~~--G~i~ 88 (128)
++|.+ |+|.
T Consensus 202 vvl~~~P~~i~ 212 (248)
T COG1116 202 VVLSNRPGRIG 212 (248)
T ss_pred EEecCCCccee
Confidence 68988 4443
No 177
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=9.8e-24 Score=176.71 Aligned_cols=86 Identities=26% Similarity=0.454 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.+++++|.|||++|||++++.++||| ++
T Consensus 406 gG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~-----------i~ 474 (510)
T PRK15439 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADR-----------VL 474 (510)
T ss_pred cHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999987 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..++++++.
T Consensus 475 ~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 475 VMHQGEISGALTGAAIN 491 (510)
T ss_pred EEECCEEEEEEccccCC
Confidence 99999999999887654
No 178
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=1.5e-23 Score=175.64 Aligned_cols=87 Identities=28% Similarity=0.563 Sum_probs=81.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.++||| +
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~-----------i 498 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR-----------A 498 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999754 99999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++++
T Consensus 499 ~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 499 ALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 7999999999998877654
No 179
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.5e-23 Score=158.83 Aligned_cols=86 Identities=28% Similarity=0.501 Sum_probs=79.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.+.++. +|.|||++||+++++.. ||+ ++
T Consensus 141 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~-----------v~ 207 (234)
T cd03251 141 GGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADR-----------IV 207 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCE-----------EE
Confidence 699999999999999999999999999999999999999999986 48999999999998865 766 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..+++++++..
T Consensus 208 ~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 208 VLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EecCCeEeeeCCHHHHHHc
Confidence 9999999999998887654
No 180
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=2.4e-23 Score=155.44 Aligned_cols=82 Identities=30% Similarity=0.523 Sum_probs=76.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH-HHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL-LCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~-~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+++.+.++.++|.|+|++||+++++.. +||+ +
T Consensus 107 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~-----------i 175 (200)
T cd03217 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDR-----------V 175 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCE-----------E
Confidence 699999999999999999999999999999999999999999997778999999999998877 6877 7
Q ss_pred EEeeCceEEeecCh
Q psy6322 80 GLMREGVLLAEESP 93 (128)
Q Consensus 80 ~vl~~G~i~~~~~~ 93 (128)
++|++|++...|+.
T Consensus 176 ~~l~~G~i~~~~~~ 189 (200)
T cd03217 176 HVLYDGRIVKSGDK 189 (200)
T ss_pred EEEECCEEEEEccH
Confidence 89999999998844
No 181
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.2e-23 Score=154.86 Aligned_cols=76 Identities=37% Similarity=0.604 Sum_probs=71.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+++++..+||+ ++
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~-----------v~ 175 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDR-----------IL 175 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977789999999999999999887 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 176 ~l~~G~i 182 (182)
T cd03215 176 VMYEGRI 182 (182)
T ss_pred EecCCcC
Confidence 9999874
No 182
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=162.15 Aligned_cols=88 Identities=34% Similarity=0.536 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||| ++
T Consensus 166 gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dr-----------i~ 233 (276)
T PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDR-----------AA 233 (276)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 58999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++.+..
T Consensus 234 ~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 234 LFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred EEECCEEEEeCCHHHHHhCc
Confidence 99999999999999987653
No 183
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=175.44 Aligned_cols=86 Identities=17% Similarity=0.375 Sum_probs=81.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.+++++|+|||++||+++++..+||| ++
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~-----------v~ 216 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDR-----------YT 216 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999887 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 217 VMKDGSSVCSGMVSDVS 233 (510)
T ss_pred EEECCEEeeecchhhCC
Confidence 99999999999887764
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3e-23 Score=161.35 Aligned_cols=88 Identities=25% Similarity=0.474 Sum_probs=80.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++. ++.|||++||+++++..+||| ++
T Consensus 157 ~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~-----------i~ 224 (269)
T PRK14259 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDM-----------TA 224 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCE-----------EE
Confidence 699999999999999999999999999999999999999999985 479999999999999999988 77
Q ss_pred EeeC-----------ceEEeecChhHHhhcc
Q psy6322 81 LMRE-----------GVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~-----------G~i~~~~~~~~l~~~~ 100 (128)
+|++ |+++..|++++++...
T Consensus 225 ~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 225 FFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred EEeccccccccccccceEEEeCCHHHHHhCc
Confidence 8996 6789999999987643
No 185
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=1.4e-23 Score=156.95 Aligned_cols=76 Identities=37% Similarity=0.644 Sum_probs=71.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++||+||+.+|+++||||||+|||+.++..+.+.|.++.+.|+|||++||+++++..+||+ ++
T Consensus 138 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~-----------i~ 206 (213)
T cd03262 138 GGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADR-----------VI 206 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987789999999999999989887 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 207 ~l~~g~i 213 (213)
T cd03262 207 FMDDGRI 213 (213)
T ss_pred EEeCCcC
Confidence 9999874
No 186
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=1.4e-23 Score=156.95 Aligned_cols=76 Identities=34% Similarity=0.528 Sum_probs=71.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++|.|+|++||+++++..+||+ ++
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~-----------i~ 207 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHR-----------VI 207 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999888887 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 208 ~l~~G~~ 214 (214)
T cd03292 208 ALERGKL 214 (214)
T ss_pred EEeCCcC
Confidence 9999874
No 187
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-23 Score=160.70 Aligned_cols=87 Identities=28% Similarity=0.513 Sum_probs=81.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++. ++.|||++||+++++..+||+ ++
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~-----------i~ 233 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDY-----------TA 233 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCE-----------EE
Confidence 699999999999999999999999999999999999999999985 479999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 234 ~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 234 FFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999988754
No 188
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-23 Score=161.98 Aligned_cols=83 Identities=35% Similarity=0.542 Sum_probs=77.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++..+||+ +
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~-----------i 204 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR-----------V 204 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999864 489999999999999888887 7
Q ss_pred EEeeCceEEeecChh
Q psy6322 80 GLMREGVLLAEESPA 94 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~ 94 (128)
++|++|+++.+++.+
T Consensus 205 ~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 205 LLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEECCEEEeecccc
Confidence 799999999988754
No 189
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=175.40 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=81.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.++.+.|.|||++|||++++..+||+ ++
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~-----------i~ 467 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR-----------IV 467 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999988899999999999999999988 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|++++.|++++..
T Consensus 468 ~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 468 VMREGRIAGELAREQAT 484 (501)
T ss_pred EEECCEEEEEEccccCC
Confidence 99999999999876543
No 190
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.8e-23 Score=158.42 Aligned_cols=88 Identities=24% Similarity=0.473 Sum_probs=81.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. ++.|||++||+++++..+||+ ++
T Consensus 149 ~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~-----------i~ 216 (250)
T PRK14266 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKY-----------TS 216 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCE-----------EE
Confidence 699999999999999999999999999999999999999999985 489999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+++++....
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~ 236 (250)
T PRK14266 217 FFLNGEIIESGLTDQIFINP 236 (250)
T ss_pred EEECCeEEEeCCHHHHHhCC
Confidence 99999999999999886543
No 191
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=1.9e-23 Score=174.94 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=82.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.++.++|+|||++||+++++..+||+ ++
T Consensus 143 gG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~-----------i~ 211 (510)
T PRK15439 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR-----------IS 211 (510)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++..
T Consensus 212 ~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 212 VMRDGTIALSGKTADLST 229 (510)
T ss_pred EEECCEEEEecChHHcCH
Confidence 999999999999887654
No 192
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=2e-23 Score=157.41 Aligned_cols=78 Identities=33% Similarity=0.486 Sum_probs=73.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+++++..+||+ ++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~-----------i~ 208 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYR-----------ML 208 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977789999999999999988887 77
Q ss_pred EeeCceEEe
Q psy6322 81 LMREGVLLA 89 (128)
Q Consensus 81 vl~~G~i~~ 89 (128)
+|++|+++.
T Consensus 209 ~l~~G~i~~ 217 (222)
T PRK10908 209 TLSDGHLHG 217 (222)
T ss_pred EEECCEEcc
Confidence 999999864
No 193
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=2.6e-23 Score=156.08 Aligned_cols=81 Identities=28% Similarity=0.565 Sum_probs=76.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|+|++||+++++..+||+ +
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~-----------v 199 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ-----------I 199 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe-----------E
Confidence 69999999999999999999999999999999999999999998764 89999999999999888887 7
Q ss_pred EEeeCceEEeecC
Q psy6322 80 GLMREGVLLAEES 92 (128)
Q Consensus 80 ~vl~~G~i~~~~~ 92 (128)
++|++|+++..|+
T Consensus 200 ~~l~~g~i~~~~~ 212 (213)
T TIGR01277 200 AVVSQGKIKVVSD 212 (213)
T ss_pred EEEECCeEEEecC
Confidence 7999999998774
No 194
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=2.5e-23 Score=161.74 Aligned_cols=87 Identities=30% Similarity=0.507 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.++ |.|+|++||+++++..+||+ +
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~-----------i 222 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQR-----------V 222 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 89999999999999989887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 223 ~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred EEEECCEEeeeCChhhccC
Confidence 7999999999999988764
No 195
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.2e-23 Score=162.04 Aligned_cols=88 Identities=32% Similarity=0.556 Sum_probs=80.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||| ++
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dr-----------i~ 250 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDK-----------TA 250 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999975 48999999999999999987 43
Q ss_pred -EeeCceEEeecChhHHhhcc
Q psy6322 81 -LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 -vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 251 v~l~~G~i~~~g~~~~~~~~~ 271 (285)
T PRK14254 251 VFLTGGELVEFDDTDKIFENP 271 (285)
T ss_pred EEeeCCEEEEeCCHHHHHhCc
Confidence 57999999999998887543
No 196
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=179.72 Aligned_cols=88 Identities=25% Similarity=0.395 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||+||+.+|++|||||||+|||+..+..+.++++++.++ |+|||++|||++++.++||| |
T Consensus 171 gGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adr-----------i 239 (623)
T PRK10261 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR-----------V 239 (623)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999755 99999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 240 ~vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EEeeCCeecccCCHHHhhcC
Confidence 89999999999999888754
No 197
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.7e-23 Score=159.56 Aligned_cols=88 Identities=31% Similarity=0.533 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++.. +.|+|++||+++++..+||| ++
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~-----------i~ 231 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDY-----------TA 231 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999865 69999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+.+++....
T Consensus 232 ~l~~G~i~~~g~~~~~~~~~ 251 (265)
T PRK14252 232 YMYMGELIEFGATDTIFIKP 251 (265)
T ss_pred EEECCEEEEeCCHHHHHhCC
Confidence 99999999999998887543
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.1e-23 Score=159.39 Aligned_cols=88 Identities=25% Similarity=0.434 Sum_probs=81.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ ++|||++||+++++..+||| ++
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~-----------i~ 220 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDF-----------TA 220 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCe-----------EE
Confidence 6999999999999999999999999999999999999999999864 69999999999999999988 77
Q ss_pred Eee-----CceEEeecChhHHhhcc
Q psy6322 81 LMR-----EGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~-----~G~i~~~~~~~~l~~~~ 100 (128)
+|+ +|+++..|+++++.+..
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~~~~~ 245 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQIFSNP 245 (259)
T ss_pred EEeccCCCCceEEEeCCHHHHhcCC
Confidence 897 59999999999987643
No 199
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=162.05 Aligned_cols=87 Identities=34% Similarity=0.540 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++. .||+ +
T Consensus 143 ~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~-----------i 210 (277)
T PRK13642 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDR-----------I 210 (277)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCE-----------E
Confidence 69999999999999999999999999999999999999999999865 999999999999985 4766 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 211 ~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 211 LVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EEEECCEEEEeCCHHHHhcC
Confidence 89999999999999888753
No 200
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4e-23 Score=163.48 Aligned_cols=97 Identities=27% Similarity=0.488 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+++|++|||||||+|||+.++..+.+.|.++++ +.|+|++||+++++..+|||+ ++
T Consensus 203 gGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i----------~~ 271 (305)
T PRK14264 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQT----------AV 271 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEE----------EE
Confidence 6999999999999999999999999999999999999999999876 489999999999999999872 23
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETA 108 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~ 108 (128)
+|++|+++..|++++++.......+..+
T Consensus 272 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 299 (305)
T PRK14264 272 FLTGGELVEYDDTDKIFENPESQRVEDY 299 (305)
T ss_pred EecCCEEEEeCCHHHHHhCcccHHHHHH
Confidence 6799999999999888765332334443
No 201
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.5e-23 Score=159.38 Aligned_cols=87 Identities=29% Similarity=0.545 Sum_probs=81.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+++.|.++. ++.|+|++||+++++..+||| ++
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~-----------v~ 219 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADT-----------TA 219 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 479999999999999988887 77
Q ss_pred Eee--------CceEEeecChhHHhhc
Q psy6322 81 LMR--------EGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~--------~G~i~~~~~~~~l~~~ 99 (128)
+|+ +|+++..|+++++++.
T Consensus 220 ~l~~~~~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 220 FFSVDISQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred EEecccccccCCceEEEeCCHHHHHhC
Confidence 895 8999999999988764
No 202
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.90 E-value=5.1e-23 Score=157.04 Aligned_cols=88 Identities=33% Similarity=0.466 Sum_probs=82.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+||+||++||+||+.+|+++||||||+|||+.++..+++.+.+++.+ |+|+|++||+++++..+||+ +
T Consensus 133 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~-----------i 201 (237)
T TIGR00968 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR-----------I 201 (237)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE-----------E
Confidence 69999999999999999999999999999999999999999998765 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+.++++..
T Consensus 202 ~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 202 VVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred EEEECCEEEEecCHHHHHcC
Confidence 79999999999998888754
No 203
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=2.7e-23 Score=174.09 Aligned_cols=87 Identities=32% Similarity=0.500 Sum_probs=81.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.|.++.+ .|+|||++|||++.+.++||| +
T Consensus 171 gGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~-----------i 239 (520)
T TIGR03269 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK-----------A 239 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE-----------E
Confidence 7999999999999999999999999999999999999999999965 499999999999999989887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 240 ~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 240 IWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEEeCCEEeeecCHHHHHH
Confidence 7999999999998887754
No 204
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=173.47 Aligned_cols=86 Identities=27% Similarity=0.429 Sum_probs=81.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.++.+.|.|||++||+++++..+||| ++
T Consensus 137 gGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~-----------i~ 205 (491)
T PRK10982 137 VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE-----------IT 205 (491)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999988887 78
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..|+++++.
T Consensus 206 ~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 206 ILRDGQWIATQPLAGLT 222 (491)
T ss_pred EEECCEEEeecChhhCC
Confidence 99999999999887753
No 205
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-23 Score=174.66 Aligned_cols=86 Identities=27% Similarity=0.431 Sum_probs=80.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.++.++|.|||++||+++++..+||| ++
T Consensus 146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~-----------v~ 214 (506)
T PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDT-----------IC 214 (506)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999887 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..|+++++.
T Consensus 215 ~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 215 VIRDGRHIGTRPAAGMT 231 (506)
T ss_pred EEECCEEeeecccccCC
Confidence 99999999999887653
No 206
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.1e-23 Score=156.70 Aligned_cols=85 Identities=29% Similarity=0.503 Sum_probs=77.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++. +|+|||++||+++++.. ||+ ++
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~-----------i~ 208 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADK-----------IL 208 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCE-----------EE
Confidence 699999999999999999999999999999999999999999985 58999999999998753 766 88
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|++...++.++++.
T Consensus 209 ~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 209 VLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999888777654
No 207
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.8e-23 Score=161.20 Aligned_cols=87 Identities=30% Similarity=0.492 Sum_probs=79.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++ |.|+|++||+++++.. ||| +
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~-----------i 212 (269)
T PRK13648 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADH-----------V 212 (269)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCE-----------E
Confidence 69999999999999999999999999999999999999999998764 8999999999998864 666 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+++++...
T Consensus 213 ~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 213 IVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred EEEECCEEEEecCHHHHhcC
Confidence 89999999999999887653
No 208
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=3.6e-23 Score=153.94 Aligned_cols=80 Identities=34% Similarity=0.555 Sum_probs=74.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++|+|+|++||+++ ++..+||+ +
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~-----------v 182 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK-----------L 182 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999998777999999999996 78888877 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|++...|
T Consensus 183 ~~l~~G~i~~~~ 194 (194)
T cd03213 183 LLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCEEEecC
Confidence 799999997653
No 209
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=174.04 Aligned_cols=86 Identities=26% Similarity=0.486 Sum_probs=80.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.+.++.+.|.|||++||+++++..+||| ++
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~-----------i~ 212 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDD-----------VT 212 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999999987 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|+++..|+++++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 213 VFRDGQFIAEREVADLT 229 (501)
T ss_pred EEeCCEEEEecCcCcCC
Confidence 99999999998877653
No 210
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=174.07 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=80.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++|||++++..+||+ ++
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~-----------v~ 466 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDR-----------IL 466 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999987 77
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
+|++|+++..++++++
T Consensus 467 ~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 467 VMHEGRISGEFTREQA 482 (501)
T ss_pred EEECCEEEEEeccccC
Confidence 9999999999887654
No 211
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.3e-23 Score=161.55 Aligned_cols=87 Identities=33% Similarity=0.559 Sum_probs=80.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++. .||| +
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~-----------i 213 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQ-----------V 213 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCE-----------E
Confidence 69999999999999999999999999999999999999999998764 999999999999884 6776 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++++.|++++++..
T Consensus 214 ~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 214 LVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred EEEECCEEEEeCCHHHHhcC
Confidence 89999999999999887653
No 212
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.7e-23 Score=151.85 Aligned_cols=76 Identities=46% Similarity=0.922 Sum_probs=71.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++|.|+|++||+++++..+||+ ++
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~-----------i~ 166 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR-----------VA 166 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987789999999999999888887 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 167 ~l~~g~i 173 (173)
T cd03230 167 ILNNGRI 173 (173)
T ss_pred EEeCCCC
Confidence 9999864
No 213
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.89 E-value=3.8e-23 Score=157.82 Aligned_cols=80 Identities=40% Similarity=0.696 Sum_probs=74.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.+++++ |.|||++||+++++..+||+ +
T Consensus 156 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~-----------i 224 (236)
T cd03267 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR-----------V 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999764 89999999999999999887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|++++.|
T Consensus 225 ~~l~~G~i~~~g 236 (236)
T cd03267 225 LVIDKGRLLYDG 236 (236)
T ss_pred EEEeCCEEEecC
Confidence 799999998654
No 214
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.89 E-value=2.7e-23 Score=151.89 Aligned_cols=75 Identities=31% Similarity=0.491 Sum_probs=69.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+++++ ..||+ ++
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~-----------v~ 166 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADR-----------IL 166 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999987 46776 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 167 ~l~~G~i 173 (173)
T cd03246 167 VLEDGRV 173 (173)
T ss_pred EEECCCC
Confidence 9999874
No 215
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=4e-23 Score=158.17 Aligned_cols=75 Identities=36% Similarity=0.593 Sum_probs=68.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+++|++++.||||.+||..+.+.+++++.++.++ |+|+|++|||...+ ..| ||+
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~-----------dr~ 212 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYA-----------DRV 212 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhC-----------CEE
Confidence 89999999999999999999999999999999999999999999755 99999999998843 355 558
Q ss_pred EEeeCceE
Q psy6322 80 GLMREGVL 87 (128)
Q Consensus 80 ~vl~~G~i 87 (128)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 89999994
No 216
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=4.8e-23 Score=168.40 Aligned_cols=90 Identities=30% Similarity=0.615 Sum_probs=85.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++++||||||+||-..+..+.++++.+.+ .|.+-+++|||+..+.++||+ |
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~-----------v 497 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHR-----------V 497 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhce-----------E
Confidence 8999999999999999999999999999999999999999999974 499999999999999999998 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+||++|+|++.|+.++++..+.
T Consensus 498 iVm~~GkiVE~G~~~~if~~P~ 519 (534)
T COG4172 498 IVMRDGKIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEEeCCEEeeeCCHHHHhcCCC
Confidence 7999999999999999998765
No 217
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=5.6e-23 Score=160.59 Aligned_cols=87 Identities=26% Similarity=0.468 Sum_probs=81.2
Q ss_pred ChHhHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHh
Q psy6322 1 GGQQRRTSLAVALL---------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYC 70 (128)
Q Consensus 1 gG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~ 70 (128)
||||||++||+||+ .+|++|||||||+|||+.++..+.+.+.++.++ |.|||++||+++++..+||+
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~--- 224 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADR--- 224 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE---
Confidence 69999999999999 599999999999999999999999999998765 89999999999999888887
Q ss_pred hhhhhcceEEEeeCceEEeecChhHHhh
Q psy6322 71 EEARQAHIIGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 71 ~~~~~~~~v~vl~~G~i~~~~~~~~l~~ 98 (128)
+++|++|+++..|+++++..
T Consensus 225 --------i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 225 --------IAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred --------EEEEECCeEEEecCHHHHcC
Confidence 77999999999999888764
No 218
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=2.8e-23 Score=173.14 Aligned_cols=85 Identities=28% Similarity=0.510 Sum_probs=79.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.++.++|.|||++||+++++..+||+ ++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~-----------i~ 212 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDT-----------IC 212 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999887 77
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
+|++|+++..++++++
T Consensus 213 ~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 213 VIRDGQHVATKDMSTM 228 (500)
T ss_pred EEeCCeEeeecCcccC
Confidence 9999999998877654
No 219
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.9e-23 Score=156.51 Aligned_cols=80 Identities=38% Similarity=0.578 Sum_probs=73.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+|++.+|+++||||||+|||+.++..+.+.|.++++ .|.|||++||+++++..+ ++ +
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~-----------~ 215 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SR-----------Q 215 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CE-----------E
Confidence 6999999999999999999999999999999999999999999875 589999999999988764 45 7
Q ss_pred EEeeCceEEeecC
Q psy6322 80 GLMREGVLLAEES 92 (128)
Q Consensus 80 ~vl~~G~i~~~~~ 92 (128)
++|++|+++..++
T Consensus 216 ~~l~~G~i~~~~~ 228 (233)
T PRK11629 216 LEMRDGRLTAELS 228 (233)
T ss_pred EEEECCEEEEEec
Confidence 7999999998765
No 220
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.9e-23 Score=153.38 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=73.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+++.+.++.+.|.|+|++||+++ ++..+||+ +
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~-----------i 179 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR-----------L 179 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCE-----------E
Confidence 69999999999999999999999999999999999999999998777999999999998 47777777 7
Q ss_pred EEeeC-ceEEeec
Q psy6322 80 GLMRE-GVLLAEE 91 (128)
Q Consensus 80 ~vl~~-G~i~~~~ 91 (128)
++|++ |++++.|
T Consensus 180 ~~l~~~g~i~~~g 192 (192)
T cd03232 180 LLLKRGGKTVYFG 192 (192)
T ss_pred EEEcCCCeEEeCC
Confidence 79999 9998754
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.89 E-value=4.1e-23 Score=156.30 Aligned_cols=80 Identities=35% Similarity=0.577 Sum_probs=74.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH-HHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI-EEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l-~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||++ +++..+||+ +
T Consensus 146 ~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~-----------i 214 (226)
T cd03234 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR-----------I 214 (226)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999877799999999999 689888887 7
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
++|++|+++..|
T Consensus 215 ~~l~~G~i~~~g 226 (226)
T cd03234 215 LLLSSGEIVYSG 226 (226)
T ss_pred EEEeCCEEEecC
Confidence 799999998764
No 222
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.5e-23 Score=156.47 Aligned_cols=86 Identities=29% Similarity=0.553 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.+ |+|||++||+++++.. ||+ ++
T Consensus 140 ~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~-----------~~ 206 (236)
T cd03253 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADK-----------II 206 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCE-----------EE
Confidence 6999999999999999999999999999999999999999999876 9999999999998854 666 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 207 ~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 207 VLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEECCEEEeeCCHHHHhhc
Confidence 9999999999988877653
No 223
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.89 E-value=7.1e-23 Score=158.19 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=79.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++..+||+ +
T Consensus 123 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~-----------i 191 (251)
T PRK09544 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDE-----------V 191 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999998765 89999999999999988887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++ +++..|+++++..
T Consensus 192 ~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 192 LCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred EEECC-ceEeeCCHHHHhC
Confidence 78865 7989999888764
No 224
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=172.19 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=78.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.+.++.+.|.|||++|||++++..+||| ++
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~-----------v~ 462 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDR-----------IL 462 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987899999999999999999887 77
Q ss_pred EeeCceEEeecChh
Q psy6322 81 LMREGVLLAEESPA 94 (128)
Q Consensus 81 vl~~G~i~~~~~~~ 94 (128)
+|++|+++..++.+
T Consensus 463 ~l~~g~i~~~~~~~ 476 (491)
T PRK10982 463 VMSNGLVAGIVDTK 476 (491)
T ss_pred EEECCEEEEEEccc
Confidence 99999999877654
No 225
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=4e-23 Score=155.40 Aligned_cols=76 Identities=33% Similarity=0.588 Sum_probs=69.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.. ||+ +
T Consensus 144 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~-----------v 211 (221)
T TIGR02211 144 GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDR-----------V 211 (221)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCE-----------E
Confidence 69999999999999999999999999999999999999999999754 8999999999998754 566 8
Q ss_pred EEeeCceEE
Q psy6322 80 GLMREGVLL 88 (128)
Q Consensus 80 ~vl~~G~i~ 88 (128)
++|++|+++
T Consensus 212 ~~l~~G~i~ 220 (221)
T TIGR02211 212 LEMKDGQLF 220 (221)
T ss_pred EEEeCCEec
Confidence 899999975
No 226
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=2.7e-23 Score=167.80 Aligned_cols=90 Identities=36% Similarity=0.561 Sum_probs=85.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||++||||+.+|++||||||+++||...+..+...++++.++ |.|+|++|||-+|+..++|| |
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDr-----------I 207 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDR-----------I 207 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccc-----------e
Confidence 89999999999999999999999999999999999999999998754 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+|...|+|++++..+.
T Consensus 208 ~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 208 AVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred EEccCCceeecCCHHHHhhCcc
Confidence 8999999999999999998764
No 227
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=3.4e-23 Score=172.60 Aligned_cols=84 Identities=30% Similarity=0.487 Sum_probs=78.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.+.+++++|.|||++|||++++.++||| ++
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~-----------v~ 474 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDR-----------VL 474 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987899999999999999999987 77
Q ss_pred EeeCceEEeecChhH
Q psy6322 81 LMREGVLLAEESPAS 95 (128)
Q Consensus 81 vl~~G~i~~~~~~~~ 95 (128)
+|++|+++..++.++
T Consensus 475 ~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 475 VIGEGKLKGDFVNHA 489 (500)
T ss_pred EEECCEEEEEEcccc
Confidence 999999998776543
No 228
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=4e-23 Score=155.30 Aligned_cols=78 Identities=36% Similarity=0.541 Sum_probs=71.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.++.++ .|||++||+++++ ++||+ ++
T Consensus 143 gG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~-----------v~ 209 (220)
T cd03245 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDR-----------II 209 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCE-----------EE
Confidence 69999999999999999999999999999999999999999998654 8999999999976 57777 78
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|+++..|
T Consensus 210 ~l~~g~i~~~~ 220 (220)
T cd03245 210 VMDSGRIVADG 220 (220)
T ss_pred EEeCCeEeecC
Confidence 99999997643
No 229
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.3e-23 Score=159.56 Aligned_cols=87 Identities=34% Similarity=0.572 Sum_probs=79.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++ +.|+|++||+++++. .||+ +
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~-----------v 212 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADK-----------V 212 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCE-----------E
Confidence 69999999999999999999999999999999999999999999765 599999999999885 6776 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++...|+++++...
T Consensus 213 ~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 213 IVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred EEEECCEEEEecCHHHHhcC
Confidence 89999999999998887653
No 230
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.7e-23 Score=172.29 Aligned_cols=82 Identities=26% Similarity=0.507 Sum_probs=77.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|.+++++|.|||++|||++++..+||| ++
T Consensus 412 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~-----------i~ 480 (510)
T PRK09700 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDR-----------IA 480 (510)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999887 77
Q ss_pred EeeCceEEeecCh
Q psy6322 81 LMREGVLLAEESP 93 (128)
Q Consensus 81 vl~~G~i~~~~~~ 93 (128)
+|++|+++..++.
T Consensus 481 ~l~~G~i~~~~~~ 493 (510)
T PRK09700 481 VFCEGRLTQILTN 493 (510)
T ss_pred EEECCEEEEEecC
Confidence 9999999988765
No 231
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.4e-23 Score=158.53 Aligned_cols=82 Identities=35% Similarity=0.557 Sum_probs=75.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++..+||+ +
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~-----------i 199 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATE-----------L 199 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 6999999999999999999999999999999999999999999864 589999999999999999887 7
Q ss_pred EEee--CceEEeecCh
Q psy6322 80 GLMR--EGVLLAEESP 93 (128)
Q Consensus 80 ~vl~--~G~i~~~~~~ 93 (128)
++|+ +|+++..++.
T Consensus 200 ~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 200 VLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEeCCCcEEEEEecC
Confidence 7898 5999988754
No 232
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=156.94 Aligned_cols=87 Identities=28% Similarity=0.441 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++..+||+ ++
T Consensus 156 ~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~-----------v~ 223 (257)
T PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADY-----------VA 223 (257)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 69999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++...|+++++..+
T Consensus 224 ~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 224 FLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999988764
No 233
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.2e-23 Score=150.56 Aligned_cols=75 Identities=41% Similarity=0.702 Sum_probs=70.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.+.+++++ |.|+|++||+++++..+||+ +
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~-----------i 171 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADR-----------V 171 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE-----------E
Confidence 69999999999999999999999999999999999999999999876 89999999999999888887 7
Q ss_pred EEeeCce
Q psy6322 80 GLMREGV 86 (128)
Q Consensus 80 ~vl~~G~ 86 (128)
++|++|+
T Consensus 172 ~~l~~g~ 178 (178)
T cd03229 172 VVLRDGK 178 (178)
T ss_pred EEEeCCC
Confidence 7898874
No 234
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.1e-22 Score=154.01 Aligned_cols=96 Identities=28% Similarity=0.532 Sum_probs=88.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||+++|||||+.+|++|+|||||.||-|.-.++|++.|++++++ |.||+++.++...+.+++|| .
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr-----------~ 207 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADR-----------G 207 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCE-----------E
Confidence 89999999999999999999999999999999999999999999866 88999999999999999988 6
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
++|.+|+|+.+|+.+++..+ +.+.+.|.
T Consensus 208 yvle~Griv~~G~~~eL~~~---~~v~~~yL 235 (237)
T COG0410 208 YVLENGRIVLSGTAAELLAD---PDVREAYL 235 (237)
T ss_pred EEEeCCEEEEecCHHHHhcC---HHHHHHhh
Confidence 79999999999999999875 34555554
No 235
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-22 Score=170.82 Aligned_cols=88 Identities=24% Similarity=0.437 Sum_probs=82.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+..+..+++.|.++.++|.|||++||+++++..+||+ ++
T Consensus 146 GGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~Dr-----------Ii 214 (549)
T PRK13545 146 SGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK-----------AL 214 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999877799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++...|+++++...
T Consensus 215 vL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 215 WLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred EEECCEEEEECCHHHHHhh
Confidence 9999999999999887754
No 236
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.89 E-value=9.1e-23 Score=154.26 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=70.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.+.+++++ |.|||++||++++++. ||+ +
T Consensus 149 ~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~-----------i 216 (228)
T PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDR-----------R 216 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCE-----------E
Confidence 69999999999999999999999999999999999999999999754 8999999999998743 666 8
Q ss_pred EEeeCceEEe
Q psy6322 80 GLMREGVLLA 89 (128)
Q Consensus 80 ~vl~~G~i~~ 89 (128)
++|++|+++.
T Consensus 217 ~~l~~g~i~~ 226 (228)
T PRK10584 217 LRLVNGQLQE 226 (228)
T ss_pred EEEECCEEEe
Confidence 8999999865
No 237
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.88 E-value=1.3e-22 Score=148.75 Aligned_cols=78 Identities=32% Similarity=0.590 Sum_probs=71.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+..+..+++.+.++. ++.|+|++||+++++. .||+ ++
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~-----------~~ 167 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HMDK-----------IL 167 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCE-----------EE
Confidence 699999999999999999999999999999999999999999985 5899999999999875 4666 88
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|++|++++.|
T Consensus 168 ~l~~g~i~~~~ 178 (178)
T cd03247 168 FLENGKIIMQG 178 (178)
T ss_pred EEECCEEEecC
Confidence 99999998653
No 238
>KOG0055|consensus
Probab=99.88 E-value=1.7e-22 Score=180.85 Aligned_cols=87 Identities=32% Similarity=0.564 Sum_probs=80.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||++||+.+++.+.+.|.+.. .|+|.|+++|.++.+. +||+|+
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIr------------naD~I~ 558 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIR------------NADKIA 558 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhh------------ccCEEE
Confidence 899999999999999999999999999999999999999999874 5899999999999874 456699
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+|++.|++++++...
T Consensus 559 v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred EEECCEEEEecCHHHHHhcc
Confidence 99999999999999999764
No 239
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.4e-22 Score=148.41 Aligned_cols=85 Identities=35% Similarity=0.610 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+|||+|||||+.+|++|++||||++|||+-...+.++|+++..-|.|-+++||+.+.+.+++.| |.
T Consensus 144 ggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~-----------vv 212 (242)
T COG4161 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASR-----------VV 212 (242)
T ss_pred cchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhh-----------eE
Confidence 8999999999999999999999999999999999999999999988899999999999999888887 77
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
.|.+|+|+..|+.+.+
T Consensus 213 yme~g~ive~g~a~~f 228 (242)
T COG4161 213 YMENGHIVEQGDASCF 228 (242)
T ss_pred eeecCeeEeecchhhc
Confidence 9999999999987643
No 240
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.4e-22 Score=151.33 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=73.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||++|||||+.+|+++||||||+|||+..+..+++.|.++. +|.|+|++||+++++.. ||+ ++
T Consensus 128 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d~-----------v~ 194 (207)
T cd03369 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YDK-----------IL 194 (207)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCE-----------EE
Confidence 699999999999999999999999999999999999999999985 58999999999998865 666 88
Q ss_pred EeeCceEEeecCh
Q psy6322 81 LMREGVLLAEESP 93 (128)
Q Consensus 81 vl~~G~i~~~~~~ 93 (128)
+|++|++...|++
T Consensus 195 ~l~~g~i~~~g~~ 207 (207)
T cd03369 195 VMDAGEVKEYDHP 207 (207)
T ss_pred EEECCEEEecCCC
Confidence 9999999887753
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=2.1e-22 Score=157.87 Aligned_cols=86 Identities=27% Similarity=0.422 Sum_probs=79.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+.. .++|||++||+++++.. ||| |+
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~-~dr-----------i~ 207 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQR-----------FL 207 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh-CCE-----------EE
Confidence 699999999999999999999999999999999999999999874 58999999999998754 666 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++...
T Consensus 208 vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 208 VIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred EecCCeEeecCCHHHHhhC
Confidence 9999999999999999874
No 242
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.9e-22 Score=157.24 Aligned_cols=90 Identities=28% Similarity=0.474 Sum_probs=85.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++|||||+.+|+++++|||+|.||...+..+.+++.++.++ |.|.+++|||++.+..+||| +
T Consensus 112 GGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr-----------i 180 (268)
T COG4608 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR-----------I 180 (268)
T ss_pred chhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc-----------E
Confidence 89999999999999999999999999999999999999999999855 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+||..|+|+..|+.++++..+.
T Consensus 181 ~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 181 AVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred EEEecCceeEecCHHHHhhCCC
Confidence 8999999999999999998654
No 243
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=3.2e-22 Score=154.38 Aligned_cols=86 Identities=22% Similarity=0.359 Sum_probs=78.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+||+||++|||||+.+|+++||||||+|||+..+..+++.+.++. ++.|+|++||+++++.. ||| ++
T Consensus 159 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~-~dr-----------i~ 225 (257)
T cd03288 159 VGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD-ADL-----------VL 225 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh-CCE-----------EE
Confidence 599999999999999999999999999999999999999999874 58999999999998864 665 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 226 ~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 226 VLSRGILVECDTPENLLAQ 244 (257)
T ss_pred EEECCEEEEeCCHHHHHhc
Confidence 9999999999999888754
No 244
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=1.9e-22 Score=153.52 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=72.8
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++||+||+.+| +++||||||+|||+..+..+.+.+.+++++|.|+|++||+++++ .+|||
T Consensus 140 gG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~----------- 207 (226)
T cd03270 140 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADH----------- 207 (226)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCE-----------
Confidence 69999999999999998 59999999999999999999999999987799999999999976 47776
Q ss_pred EEEe------eCceEEeec
Q psy6322 79 IGLM------REGVLLAEE 91 (128)
Q Consensus 79 v~vl------~~G~i~~~~ 91 (128)
+++| ++|+|+++|
T Consensus 208 i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 208 VIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEeCCCccccCCEEEecC
Confidence 7899 999999875
No 245
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.9e-22 Score=168.48 Aligned_cols=82 Identities=26% Similarity=0.450 Sum_probs=77.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++||+++++..+||| ++
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~-----------i~ 211 (501)
T PRK11288 143 IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDA-----------IT 211 (501)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999988887 77
Q ss_pred EeeCceEEeecCh
Q psy6322 81 LMREGVLLAEESP 93 (128)
Q Consensus 81 vl~~G~i~~~~~~ 93 (128)
+|++|+++..++.
T Consensus 212 ~l~~G~i~~~~~~ 224 (501)
T PRK11288 212 VFKDGRYVATFDD 224 (501)
T ss_pred EEECCEEEeecCc
Confidence 9999999876653
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=2e-22 Score=188.89 Aligned_cols=89 Identities=34% Similarity=0.711 Sum_probs=84.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||+++|+||+.+|+++||||||+||||.+++.+++.|.+++++|+|||++||++++++++||| ++
T Consensus 2073 GGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDr-----------V~ 2141 (2272)
T TIGR01257 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTR-----------LA 2141 (2272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999999988 78
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|++++.|+++++....
T Consensus 2142 IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2142 IMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred EEECCEEEEECCHHHHHHHh
Confidence 99999999999999997643
No 247
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.6e-22 Score=162.59 Aligned_cols=90 Identities=33% Similarity=0.520 Sum_probs=85.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||++||||+++|+++|||||+|+||...+..+...|+++.++ |.|+|++|||-.|+..++|| |
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladr-----------i 204 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADR-----------I 204 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCE-----------E
Confidence 89999999999999999999999999999999999999999999866 99999999999999999988 8
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+|...|+|.+++..+.
T Consensus 205 ~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 205 VVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred EEEeCCeeeecCChHHHhhCcc
Confidence 8999999999999999997653
No 248
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=4.1e-22 Score=168.68 Aligned_cols=86 Identities=33% Similarity=0.430 Sum_probs=78.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||+++.+. .||+|+
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~------------~aD~Ii 554 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLA------------QWDQIW 554 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHH------------hCCEEE
Confidence 799999999999999999999999999999999999999999874 5899999999998653 345588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 555 vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 555 VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred EEeCCeEeecCCHHHHHhc
Confidence 9999999999999999865
No 249
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=4.5e-22 Score=162.76 Aligned_cols=90 Identities=33% Similarity=0.567 Sum_probs=86.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||.||.||+++|++||.||||.+||...+.+|.++++++.++ |++++++|||+..+.+++|| |
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr-----------V 228 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADR-----------V 228 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhh-----------E
Confidence 89999999999999999999999999999999999999999999755 99999999999999999998 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
.||.+|+++..|+.++++..+.
T Consensus 229 ~VM~~G~ivE~~~t~~lF~~Pq 250 (534)
T COG4172 229 YVMQHGEIVETGTTETLFAAPQ 250 (534)
T ss_pred EEEeccEEeecCcHHHHhhCCC
Confidence 7999999999999999998764
No 250
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=3.5e-22 Score=150.27 Aligned_cols=79 Identities=28% Similarity=0.364 Sum_probs=72.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+||+||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ +.|+|++||+++++.. ||+ ++
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~-----------i~ 208 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDR-----------IL 208 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCE-----------EE
Confidence 6999999999999999999999999999999999999999999854 6899999999998864 666 88
Q ss_pred EeeCceEEeecC
Q psy6322 81 LMREGVLLAEES 92 (128)
Q Consensus 81 vl~~G~i~~~~~ 92 (128)
+|++|+++..|+
T Consensus 209 ~l~~g~~~~~~~ 220 (221)
T cd03244 209 VLDKGRVVEFDS 220 (221)
T ss_pred EEECCeEEecCC
Confidence 999999988765
No 251
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=3.6e-22 Score=173.25 Aligned_cols=86 Identities=37% Similarity=0.610 Sum_probs=80.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|++||||||||+||+.+.+.+.+.+.++. .|+|+|++||.++.+ +.||+|+
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti------------~~adrIi 678 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTI------------RSADRII 678 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHh------------hhccEEE
Confidence 799999999999999999999999999999999999999999985 579999999999954 5677799
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
||++|+|+.+|+.+++++.
T Consensus 679 Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 679 VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred EccCCceeccCCHHHHHHh
Confidence 9999999999999999875
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.1e-22 Score=145.40 Aligned_cols=73 Identities=38% Similarity=0.628 Sum_probs=67.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+|||||++||+||+.+|+++||||||+|||+..+..+.+.+.++. +++|+|++||+++++.. ||+ ++
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~-----------~~ 165 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD-ADR-----------II 165 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh-CCE-----------EE
Confidence 699999999999999999999999999999999999999999985 47999999999999876 776 77
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|+
T Consensus 166 ~l~~g~ 171 (171)
T cd03228 166 VLDDGR 171 (171)
T ss_pred EEcCCC
Confidence 898874
No 253
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.87 E-value=9.1e-22 Score=166.21 Aligned_cols=86 Identities=34% Similarity=0.533 Sum_probs=79.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++.+|+++||||||++||+.+...+.+.+.++. +++|+|+++|.++.+.. | |+|+
T Consensus 468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-a-----------D~Ii 534 (567)
T COG1132 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-A-----------DRII 534 (567)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-C-----------CEEE
Confidence 699999999999999999999999999999999999999999876 67899999999997754 5 5588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
||++|++++.|++++++..
T Consensus 535 Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 535 VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred EEECCEEEEecCHHHHHHc
Confidence 9999999999999999976
No 254
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=8.9e-22 Score=151.87 Aligned_cols=86 Identities=26% Similarity=0.365 Sum_probs=74.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||+||+.+|+++||||||+|||+..+..+.+.|.+++++ |+|||++||+++++..+||+ +
T Consensus 118 gGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~-----------i 186 (246)
T cd03237 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADR-----------L 186 (246)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999754 89999999999999999887 7
Q ss_pred EEeeCceEE--eecChhHHh
Q psy6322 80 GLMREGVLL--AEESPASLM 97 (128)
Q Consensus 80 ~vl~~G~i~--~~~~~~~l~ 97 (128)
++|+++... ..+++.++.
T Consensus 187 ~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 187 IVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEcCCCeeEEEeCCchHHH
Confidence 788765444 345555543
No 255
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.87 E-value=7.7e-22 Score=166.08 Aligned_cols=86 Identities=29% Similarity=0.426 Sum_probs=78.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||+|||+.++..+.+.+.++..+|+|+|++||+++.+ ..||+ |+
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~-----------i~ 524 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDK-----------IL 524 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999876689999999999854 34555 88
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|+++++++
T Consensus 525 ~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 525 VLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEECCEEEeeCCHHHHhh
Confidence 999999999999888764
No 256
>PLN03211 ABC transporter G-25; Provisional
Probab=99.87 E-value=7.4e-22 Score=170.33 Aligned_cols=87 Identities=33% Similarity=0.482 Sum_probs=81.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||++|+.+|++++|||||+|||+.++..+.+.++++.++|+|||++||+++ ++.++||+ +
T Consensus 209 gGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~-----------i 277 (659)
T PLN03211 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS-----------V 277 (659)
T ss_pred hhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce-----------E
Confidence 79999999999999999999999999999999999999999999878999999999998 58888887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|++++.|+++++..
T Consensus 278 ilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 278 LVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEecCCcEEEECCHHHHHH
Confidence 7999999999999988763
No 257
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=165.51 Aligned_cols=86 Identities=30% Similarity=0.486 Sum_probs=78.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+...+.+.+.++. +++|+|++||+++.+. .| |+|+
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~-~~-----------D~Ii 549 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-KA-----------DEIL 549 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHH-hC-----------CEEE
Confidence 799999999999999999999999999999999999999999874 5799999999997542 35 5588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 550 ~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 550 VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999999865
No 258
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-21 Score=146.86 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=70.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEE-EeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMI-TTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~-~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
+|||||++||+||+.+|+++||||||+|||+.+++.+++.+.++.++ +.|+++ ++|+++++..+||+
T Consensus 121 ~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~----------- 189 (202)
T cd03233 121 GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK----------- 189 (202)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe-----------
Confidence 69999999999999999999999999999999999999999999765 666555 56667888888887
Q ss_pred EEEeeCceEEeec
Q psy6322 79 IGLMREGVLLAEE 91 (128)
Q Consensus 79 v~vl~~G~i~~~~ 91 (128)
+++|++|+++..|
T Consensus 190 i~~l~~G~i~~~g 202 (202)
T cd03233 190 VLVLYEGRQIYYG 202 (202)
T ss_pred EEEEECCEEEecC
Confidence 7899999998653
No 259
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=8.5e-22 Score=145.85 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=74.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENG-KTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||+++|||++.+|+++||||||+|||+..+..+.+.+.++.+++ .|+|++||+++++..+||+ +
T Consensus 74 gGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~-----------i 142 (177)
T cd03222 74 GGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR-----------I 142 (177)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE-----------E
Confidence 699999999999999999999999999999999999999999987664 9999999999999988887 7
Q ss_pred EEeeCceEEee--cChhH
Q psy6322 80 GLMREGVLLAE--ESPAS 95 (128)
Q Consensus 80 ~vl~~G~i~~~--~~~~~ 95 (128)
++|+++-.+.+ |.|..
T Consensus 143 ~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 143 HVFEGEPGVYGIASQPKG 160 (177)
T ss_pred EEEcCCCccceeccCCcc
Confidence 78988766544 55543
No 260
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.87 E-value=9.6e-22 Score=147.35 Aligned_cols=81 Identities=36% Similarity=0.570 Sum_probs=76.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+||||+||||++++|++||.||||.+|||.....|++++.++...|.||+|.|||.+.+..+-.| +.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~r-----------vl 208 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHR-----------VL 208 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCc-----------EE
Confidence 8999999999999999999999999999999999999999999998899999999999999888766 77
Q ss_pred EeeCceEEeecC
Q psy6322 81 LMREGVLLAEES 92 (128)
Q Consensus 81 vl~~G~i~~~~~ 92 (128)
.+.+|+++.+..
T Consensus 209 ~l~~Grl~~d~~ 220 (223)
T COG2884 209 ALEDGRLVRDES 220 (223)
T ss_pred EEeCCEEEeccc
Confidence 999999987653
No 261
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=1.6e-21 Score=147.25 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=77.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+|||||++||+||+.+|+++|||||++++|+..+..+.+.+.+..+ +.|+|++||+++++..+||+ ++
T Consensus 107 ~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~~d~-----------i~ 174 (213)
T PRK15177 107 VTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIKEHCHA-----------FG 174 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHHHhcCe-----------eE
Confidence 6999999999999999999999999999999999999998876543 46899999999999989888 77
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|++++.++.++..
T Consensus 175 ~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 175 VLLHGKITMCEDLAQAT 191 (213)
T ss_pred EEECCeEEEeCCHHHHH
Confidence 99999999999887764
No 262
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-21 Score=164.57 Aligned_cols=87 Identities=38% Similarity=0.556 Sum_probs=81.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+|||++|||++.+++++||||||++||.++.+.|.+.|.++.+ ++|+|++||++..+ ..||+|+
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~------------~~~D~I~ 525 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDA------------ADADRIV 525 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHH------------hcCCEEE
Confidence 7999999999999999999999999999999999999999999865 59999999999944 6788899
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|++++.|+++++.++.
T Consensus 526 vld~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 526 VLDNGRLVEQGTHEELSEKQ 545 (559)
T ss_pred EecCCceeccCCHHHHhhcC
Confidence 99999999999999998764
No 263
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=1.6e-21 Score=165.29 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+. .|| +|+
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~-~~D-----------~ii 545 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIV-EAD-----------TIL 545 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHH-hCC-----------EEE
Confidence 799999999999999999999999999999999999999999875 4699999999997653 355 588
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAF 109 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~ 109 (128)
+|++|+++..|+++++++.. ......+
T Consensus 546 ~l~~G~i~~~G~~~~L~~~~--~~y~~l~ 572 (592)
T PRK10790 546 VLHRGQAVEQGTHQQLLAAQ--GRYWQMY 572 (592)
T ss_pred EEECCEEEEEcCHHHHHhCC--CHHHHHH
Confidence 99999999999999998653 3444444
No 264
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=1.4e-21 Score=168.39 Aligned_cols=84 Identities=30% Similarity=0.457 Sum_probs=76.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.++ ++|+|++||+++.+. .||+|+
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~------------~~D~Ii 655 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIR------------NADRIY 655 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHH------------cCCEEE
Confidence 79999999999999999999999999999999999999999876 579999999998663 345588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 656 vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 656 VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999864
No 265
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=2.5e-21 Score=152.32 Aligned_cols=86 Identities=30% Similarity=0.388 Sum_probs=76.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRL-VEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l-~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+..+..+.+.+ .++ .++.|||++||+++++. .||+ +
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~~~~tIiiisH~~~~~~-~~d~-----------i 228 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-MANKTRILVTSKMEHLK-KADK-----------I 228 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-hCCCEEEEEeCChHHHH-hCCE-----------E
Confidence 69999999999999999999999999999999999999865 455 45799999999999873 5665 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+++++...
T Consensus 229 ~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 229 LILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCEEEEECCHHHHHhc
Confidence 89999999999999888754
No 266
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=1.1e-21 Score=169.43 Aligned_cols=84 Identities=38% Similarity=0.551 Sum_probs=76.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.+ .++|+|++||+++.+.. || +|+
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D-----------~Ii 682 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CD-----------EII 682 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh-CC-----------EEE
Confidence 7999999999999999999999999999999999999999976 48999999999986633 55 588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 683 vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 683 VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred EEeCCEEEEecCHHHHHHc
Confidence 9999999999999999864
No 267
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-21 Score=162.92 Aligned_cols=86 Identities=38% Similarity=0.649 Sum_probs=80.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||+++++.+++||||||.|||+.+.+++++.+.+.. +|+|+|++||++..+ +.+|+|+
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~l------------e~~drIi 543 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGL------------ERMDRII 543 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccH------------hhcCEEE
Confidence 899999999999999999999999999999999999999999975 589999999999855 4567799
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++.+|++++++.+
T Consensus 544 vl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 544 VLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred EEECCeeeecCCHHhhhcc
Confidence 9999999999999999874
No 268
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.86 E-value=2.5e-21 Score=164.61 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=78.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. +++|+|++||+++.+. .||+ |+
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~-~~d~-----------i~ 540 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVR-NADL-----------VL 540 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHH-cCCE-----------EE
Confidence 799999999999999999999999999999999999999999874 5899999999998763 3555 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++.+.
T Consensus 541 ~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred EEECCEEEEECCHHHHHHC
Confidence 9999999999999998865
No 269
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.86 E-value=2.6e-21 Score=164.02 Aligned_cols=95 Identities=29% Similarity=0.424 Sum_probs=81.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+...+++.+.++. +++|+|++||+++.+ +.|| +|+
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~-~~~D-----------~ii 540 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTV-RNAD-----------RIL 540 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHH-HhCC-----------EEE
Confidence 799999999999999999999999999999999999999998874 579999999999865 3355 588
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
+|++|++...|+.++++... ....+.+.
T Consensus 541 ~l~~G~i~~~g~~~~l~~~~--~~y~~l~~ 568 (588)
T PRK13657 541 VFDNGRVVESGSFDELVARG--GRFAALLR 568 (588)
T ss_pred EEECCEEEEeCCHHHHHHCC--ChHHHHHH
Confidence 99999999999999998653 23444443
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.86 E-value=1.1e-21 Score=148.15 Aligned_cols=74 Identities=32% Similarity=0.548 Sum_probs=68.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+..+..+.+.+.++.+ +.|+|++||+++++.. ||+ ++
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~-----------i~ 219 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQ-----------IL 219 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCE-----------EE
Confidence 6999999999999999999999999999999999999999999864 6999999999998854 776 77
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
+|++|++
T Consensus 220 ~l~~g~i 226 (226)
T cd03248 220 VLDGGRI 226 (226)
T ss_pred EecCCcC
Confidence 9999874
No 271
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.3e-21 Score=153.86 Aligned_cols=89 Identities=24% Similarity=0.451 Sum_probs=84.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||+||||+|+|||+.+|++|+||||.++||...++.++-.+.++.++ ...|+++||.++|+.+++|+ |
T Consensus 131 GGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~-----------v 199 (352)
T COG4148 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR-----------V 199 (352)
T ss_pred cchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe-----------E
Confidence 89999999999999999999999999999999999999999999866 89999999999999999998 6
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|.+|++.+.|..++++...
T Consensus 200 V~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 200 VVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred EEecCCeEEecCcHHHHhcCc
Confidence 699999999999999998653
No 272
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.86 E-value=1.8e-21 Score=138.98 Aligned_cols=72 Identities=36% Similarity=0.456 Sum_probs=67.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+||+||++|||||+.+|+++||||||+|||+.++..+.+.++++ +.|+|++||+++++..+||+ ++
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~-----------v~ 138 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATK-----------II 138 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCE-----------EE
Confidence 69999999999999999999999999999999999999999876 47999999999999888887 77
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|+
T Consensus 139 ~l~~g~ 144 (144)
T cd03221 139 ELEDGK 144 (144)
T ss_pred EEeCCC
Confidence 898885
No 273
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=3.1e-21 Score=166.49 Aligned_cols=87 Identities=33% Similarity=0.549 Sum_probs=79.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||+|||+.+++.+.+.+.++. .++|+|++||+++.+.. ||+ |+
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~-----------ii 662 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRA-CDR-----------II 662 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHh-CCE-----------EE
Confidence 799999999999999999999999999999999999999999874 68999999999987643 555 88
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+.+++++..
T Consensus 663 ~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 663 VLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred EEeCCEEEEeCCHHHHHHcC
Confidence 99999999999999998753
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.86 E-value=1.8e-21 Score=167.79 Aligned_cols=86 Identities=34% Similarity=0.498 Sum_probs=78.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+ +.| |+|+
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~-~~~-----------D~ii 670 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLL-DLV-----------DRII 670 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH-HhC-----------CEEE
Confidence 799999999999999999999999999999999999999999875 479999999999865 344 5588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 671 vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 671 VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCEEEeeCCHHHHHHH
Confidence 9999999999999998754
No 275
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=2.9e-21 Score=163.84 Aligned_cols=86 Identities=38% Similarity=0.598 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+++.+.+.+.++. +++|+|++||+++.+.. || +|+
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~-~d-----------~i~ 544 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQ-FD-----------RIC 544 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHh-CC-----------EEE
Confidence 799999999999999999999999999999999999999999885 58999999999987642 55 488
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 545 ~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred EEeCCeEEEeCCHHHHHhc
Confidence 9999999999999999865
No 276
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=2.2e-21 Score=182.06 Aligned_cols=88 Identities=38% Similarity=0.703 Sum_probs=82.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||| |+
T Consensus 1064 GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDr-----------I~ 1131 (2272)
T TIGR01257 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDR-----------IA 1131 (2272)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCE-----------EE
Confidence 799999999999999999999999999999999999999999984 699999999999999999987 88
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|++.+.|++..+.+..
T Consensus 1132 iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1132 IISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred EEECCEEEEecCHHHHHHhc
Confidence 99999999999999887643
No 277
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=3.7e-21 Score=162.92 Aligned_cols=87 Identities=30% Similarity=0.442 Sum_probs=78.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||+|||+.++..+.+.+.++. +|+|+|++||+++.+. .| |+++
T Consensus 454 gGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~-~~-----------d~i~ 520 (569)
T PRK10789 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALT-EA-----------SEIL 520 (569)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHH-cC-----------CEEE
Confidence 799999999999999999999999999999999999999999874 6899999999998653 34 5588
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|+.+++++..
T Consensus 521 ~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 521 VMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred EEeCCEEEEecCHHHHHHcC
Confidence 99999999999999998653
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=162.97 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=77.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.+.++ +.|||++|||++++..+||| ++
T Consensus 441 gGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~-----------i~ 506 (530)
T PRK15064 441 GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATR-----------II 506 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 79999999999999999999999999999999999999999886 35999999999999999887 77
Q ss_pred EeeCceEE-eecChhHHhhc
Q psy6322 81 LMREGVLL-AEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~~ 99 (128)
+|++|+++ ..|++.+++..
T Consensus 507 ~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 507 EITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred EEECCeEEEcCCCHHHHHHH
Confidence 99999998 78888777643
No 279
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=162.53 Aligned_cols=84 Identities=32% Similarity=0.398 Sum_probs=76.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.+ .|.|||++||+++++.++||+ ++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~-----------i~ 223 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTH-----------MA 223 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcce-----------EE
Confidence 7999999999999999999999999999999999999999863 589999999999999999887 77
Q ss_pred EeeCceE-EeecChhHHhh
Q psy6322 81 LMREGVL-LAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i-~~~~~~~~l~~ 98 (128)
+|++|++ ++.|++++++.
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 47888887654
No 280
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.85 E-value=2.5e-21 Score=145.96 Aligned_cols=76 Identities=34% Similarity=0.563 Sum_probs=69.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .++|+|++||+++. ..+||+ +
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~-----------v 211 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADR-----------I 211 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCE-----------E
Confidence 6999999999999999999999999999999999999999999875 48999999999984 467776 7
Q ss_pred EEeeCceEE
Q psy6322 80 GLMREGVLL 88 (128)
Q Consensus 80 ~vl~~G~i~ 88 (128)
++|++|+++
T Consensus 212 ~~l~~g~~~ 220 (220)
T TIGR02982 212 VHMEDGKLL 220 (220)
T ss_pred EEEECCEEC
Confidence 899999863
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=1.6e-21 Score=162.26 Aligned_cols=81 Identities=28% Similarity=0.463 Sum_probs=73.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEeCCHHHHHH-HHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENG-KTVMITTHYIEEARL-LCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~~sH~l~~~~~-~~d~v~~~~~~~~~~ 78 (128)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|.++++++ .|||++||+++++.. +||+
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~----------- 472 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHR----------- 472 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhee-----------
Confidence 699999999999999999999999999999999999999999998765 579999999999977 4776
Q ss_pred EEEeeCceEEeecC
Q psy6322 79 IGLMREGVLLAEES 92 (128)
Q Consensus 79 v~vl~~G~i~~~~~ 92 (128)
+++|++|+++....
T Consensus 473 v~~l~~G~i~~~~~ 486 (490)
T PRK10938 473 LEFVPDGDIYRYVQ 486 (490)
T ss_pred EEEecCCceEEeec
Confidence 78999999887543
No 282
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=4e-21 Score=142.12 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=70.5
Q ss_pred ChHhHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHN--PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~--p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++||+||+.+ |+++||||||+|||+..+..+.+.++++++.|.|||++||+++++ ..||+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~----------- 157 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADW----------- 157 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCE-----------
Confidence 6999999999999999 999999999999999999999999999877799999999999976 45766
Q ss_pred EEEeeCceEEeec
Q psy6322 79 IGLMREGVLLAEE 91 (128)
Q Consensus 79 v~vl~~G~i~~~~ 91 (128)
+++|++|.....|
T Consensus 158 i~~l~~g~~~~~~ 170 (176)
T cd03238 158 IIDFGPGSGKSGG 170 (176)
T ss_pred EEEECCCCCCCCc
Confidence 7799887664444
No 283
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.85 E-value=3.2e-21 Score=166.61 Aligned_cols=85 Identities=34% Similarity=0.540 Sum_probs=77.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.++ +|+|+|++||+++.+ +.| |+|+
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~-~~~-----------D~i~ 679 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVA-KQS-----------DKII 679 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHH-HcC-----------CEEE
Confidence 79999999999999999999999999999999999999999875 579999999999865 335 4588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+.+++++.
T Consensus 680 ~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 680 VLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred EEECCEEEEECCHHHHHhc
Confidence 9999999999999999865
No 284
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.85 E-value=4.5e-21 Score=164.16 Aligned_cols=87 Identities=38% Similarity=0.533 Sum_probs=81.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||++|+.+|++++|||||+|||+.++..+.+.++++.+.|+|+|+++|+++ ++.++||+ +
T Consensus 169 gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~-----------i 237 (617)
T TIGR00955 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDK-----------I 237 (617)
T ss_pred cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhce-----------E
Confidence 79999999999999999999999999999999999999999999877999999999995 78888888 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|++++.|+++++..
T Consensus 238 ~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 238 ILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred EEeeCCeEEEECCHHHHHH
Confidence 7999999999999988753
No 285
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=6.1e-21 Score=148.95 Aligned_cols=81 Identities=31% Similarity=0.462 Sum_probs=74.3
Q ss_pred ChHhHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHN---PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~---p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||+||++||++|+.+ |+++||||||+|||+..+..+.+.|.++.++|.|+|++||+++++. .||+
T Consensus 172 gGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~---------- 240 (261)
T cd03271 172 GGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADW---------- 240 (261)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE----------
Confidence 6999999999999996 7999999999999999999999999999888999999999999774 4655
Q ss_pred eEEEe------eCceEEeecCh
Q psy6322 78 IIGLM------REGVLLAEESP 93 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~ 93 (128)
+++| ++|++++.|++
T Consensus 241 -ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 241 -IIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -EEEecCCcCCCCCEEEEeCCC
Confidence 8899 89999999874
No 286
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.85 E-value=2.6e-21 Score=146.63 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=70.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||++||+||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++. .||+ +
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~-----------i 207 (225)
T PRK10247 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADK-----------V 207 (225)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCE-----------E
Confidence 69999999999999999999999999999999999999999998754 899999999999885 5776 7
Q ss_pred EEee-CceEEeecC
Q psy6322 80 GLMR-EGVLLAEES 92 (128)
Q Consensus 80 ~vl~-~G~i~~~~~ 92 (128)
++|+ ++..+.+|+
T Consensus 208 ~~l~~~~~~~~~~~ 221 (225)
T PRK10247 208 ITLQPHAGEMQEAR 221 (225)
T ss_pred EEEecccchHhhhh
Confidence 7884 555555554
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=9.4e-21 Score=159.49 Aligned_cols=86 Identities=30% Similarity=0.479 Sum_probs=77.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+ ..|| +|+
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~-~~~D-----------~ii 538 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTI-EKAD-----------RIV 538 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHH-HhCC-----------EEE
Confidence 799999999999999999999999999999999999999999874 579999999999754 3355 588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++...|+.+++++.
T Consensus 539 ~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 539 VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred EEeCCEEEeeCCHHHHHHc
Confidence 9999999999999998864
No 288
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.1e-21 Score=136.38 Aligned_cols=75 Identities=48% Similarity=0.761 Sum_probs=69.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+||+||++||++|+.+|++++|||||+|||+.++..+.+.+.++...+.|++++||+++++..+||+ ++
T Consensus 83 ~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~-----------i~ 151 (157)
T cd00267 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADR-----------VI 151 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999876689999999999999988887 77
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|+
T Consensus 152 ~l~~g~ 157 (157)
T cd00267 152 VLKDGK 157 (157)
T ss_pred EEeCcC
Confidence 888874
No 289
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=6.1e-21 Score=143.63 Aligned_cols=67 Identities=27% Similarity=0.298 Sum_probs=64.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++|||+++.+|+++||||||+|||+..++.+.+.+.++.++|.|+|++||+++++.++||+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 140 AGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcce
Confidence 6999999999999999999999999999999999999999999887799999999999999999988
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.84 E-value=5.6e-21 Score=144.10 Aligned_cols=68 Identities=26% Similarity=0.458 Sum_probs=65.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v 68 (128)
||||||++||+||+.+|+++||||||+|||+..+..+.+.+.++.++|.|||++||+++++..+|||+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRV 219 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhccee
Confidence 69999999999999999999999999999999999999999999777999999999999999999984
No 291
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=5e-21 Score=142.73 Aligned_cols=74 Identities=28% Similarity=0.513 Sum_probs=66.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWD-RLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+|||||++|||||+.+|+++||||||+|||+..+..+.+ ++.++.++|.|||++||+++++.. ||+ +
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~-----------i 197 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQ-----------I 197 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCE-----------E
Confidence 699999999999999999999999999999999999988 466665568999999999998876 766 7
Q ss_pred EEeeCce
Q psy6322 80 GLMREGV 86 (128)
Q Consensus 80 ~vl~~G~ 86 (128)
++|++|+
T Consensus 198 ~~l~~G~ 204 (204)
T cd03250 198 VVLDNGR 204 (204)
T ss_pred EEEeCCC
Confidence 7999885
No 292
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=5.4e-21 Score=148.35 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=71.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.++++.++|+|||++||+++++..+||+ ++
T Consensus 142 ~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~-----------i~ 210 (255)
T cd03236 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDY-----------IH 210 (255)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987789999999999999888887 66
Q ss_pred EeeCceEEeec
Q psy6322 81 LMREGVLLAEE 91 (128)
Q Consensus 81 vl~~G~i~~~~ 91 (128)
+|+ |++.+.|
T Consensus 211 ~l~-~~~~~~~ 220 (255)
T cd03236 211 CLY-GEPGAYG 220 (255)
T ss_pred EEC-CCCCcce
Confidence 784 5565533
No 293
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.84 E-value=4e-21 Score=160.62 Aligned_cols=84 Identities=33% Similarity=0.522 Sum_probs=79.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+||||.|||+|+.+|++|||||||.|+|..++..|+++|++++++|++||++|.+++|+..+||| |.
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DR-----------Il 472 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDR-----------IL 472 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCE-----------EE
Confidence 8999999999999999999999999999999999999999999999999999999999999999988 77
Q ss_pred EeeCceEEeecChhH
Q psy6322 81 LMREGVLLAEESPAS 95 (128)
Q Consensus 81 vl~~G~i~~~~~~~~ 95 (128)
||++|+++.+-+.++
T Consensus 473 Vm~~Gri~~e~~~~~ 487 (500)
T COG1129 473 VMREGRIVGELDREE 487 (500)
T ss_pred EEECCEEEEEecccc
Confidence 999999998766554
No 294
>KOG0058|consensus
Probab=99.84 E-value=9.4e-21 Score=162.57 Aligned_cols=87 Identities=32% Similarity=0.534 Sum_probs=81.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||++||++|||||.||+||.+....+.+.+.+..+ ++|||++.|.++.+ +.||+|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV------------~~Ad~Iv 673 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTV------------RHADQIV 673 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHh------------hhccEEE
Confidence 8999999999999999999999999999999999999999999764 59999999999966 6788899
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
++++|+++..|+.+++++..
T Consensus 674 vi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 674 VIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred EEcCCeEEecccHHHHhhCc
Confidence 99999999999999999864
No 295
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.84 E-value=5.6e-21 Score=165.64 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=74.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++||||||++||+.+.+.+.+ .. ..+++|+|++||+++.+. .| |+|+
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~-~a-----------D~Ii 684 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVE-RA-----------DQIL 684 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHH-hC-----------CEEE
Confidence 799999999999999999999999999999999999988 22 235899999999998653 34 4588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+|+..|+++++++.
T Consensus 685 vL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 685 VLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred EEECCEEEEeeCHHHHHhC
Confidence 9999999999999999865
No 296
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.8e-21 Score=163.70 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=76.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|.++ . .|||++|||++++..+||| ++
T Consensus 433 gGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~~~~~~~d~-----------i~ 498 (638)
T PRK10636 433 GGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRHLLRSTTDD-----------LY 498 (638)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHHHHHHhCCE-----------EE
Confidence 79999999999999999999999999999999999999999987 3 4999999999999999987 77
Q ss_pred EeeCceEE-eecChhHHh
Q psy6322 81 LMREGVLL-AEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~ 97 (128)
+|++|+++ +.|+.++..
T Consensus 499 ~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 499 LVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred EEECCEEEEcCCCHHHHH
Confidence 99999997 788887763
No 297
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.4e-20 Score=143.33 Aligned_cols=96 Identities=28% Similarity=0.431 Sum_probs=86.9
Q ss_pred ChHhHHHHHHHHHhcC------CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhh
Q psy6322 1 GGQQRRTSLAVALLHN------PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEAR 74 (128)
Q Consensus 1 gG~~qrv~ia~al~~~------p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~ 74 (128)
||+||||.+||.|++- +++|+|||||++||+..+..++++.+.++++|..|+.+-||++.++.+|||
T Consensus 138 GGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDr------- 210 (259)
T COG4559 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADR------- 210 (259)
T ss_pred chHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhhe-------
Confidence 8999999999999864 568899999999999999999999999999999999999999999999988
Q ss_pred hcceEEEeeCceEEeecChhHHhhccCcchHHHHHH
Q psy6322 75 QAHIIGLMREGVLLAEESPASLMARRNVDSLETAFL 110 (128)
Q Consensus 75 ~~~~v~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~ 110 (128)
|++|++||+++.|+|++.+.. +.++..|.
T Consensus 211 ----ivll~~Grv~a~g~p~~vlt~---Etl~~vyg 239 (259)
T COG4559 211 ----IVLLHQGRVIASGSPQDVLTD---ETLERVYG 239 (259)
T ss_pred ----eeeeeCCeEeecCCHHHhcCH---HHHHHHhC
Confidence 779999999999999998875 35666653
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=8e-21 Score=160.70 Aligned_cols=84 Identities=31% Similarity=0.324 Sum_probs=76.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++. .|||++||+++++..+||+ |+
T Consensus 166 gGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~-----------i~ 231 (556)
T PRK11819 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGW-----------IL 231 (556)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCe-----------EE
Confidence 799999999999999999999999999999999999999999872 5999999999999999887 77
Q ss_pred EeeCceEE-eecChhHHhh
Q psy6322 81 LMREGVLL-AEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~ 98 (128)
+|++|+++ +.|+.++...
T Consensus 232 ~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999986 7788776543
No 299
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.84 E-value=6.1e-21 Score=143.55 Aligned_cols=74 Identities=30% Similarity=0.464 Sum_probs=65.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWD--RLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~--~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++ ++..+.+.|.|+|++||+++++. .||+
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~----------- 210 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADW----------- 210 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCE-----------
Confidence 699999999999999999999999999999999999998 66666666899999999999874 4666
Q ss_pred EEEeeCce
Q psy6322 79 IGLMREGV 86 (128)
Q Consensus 79 v~vl~~G~ 86 (128)
+++|++|+
T Consensus 211 i~~l~~G~ 218 (218)
T cd03290 211 IIAMKDGS 218 (218)
T ss_pred EEEecCCC
Confidence 77898874
No 300
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=147.41 Aligned_cols=89 Identities=40% Similarity=0.592 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
-|||.|+.+|.||+++|++|+|||||-|||..++..+.+++++... ++.||+++||+++.++++||| |
T Consensus 159 lGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r-----------v 227 (325)
T COG4586 159 LGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR-----------V 227 (325)
T ss_pred chHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh-----------e
Confidence 3999999999999999999999999999999999999999999984 599999999999999999999 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|+.|+++++|+.+++..++
T Consensus 228 ~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 228 LLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred EEeeCCcEeecccHHHHHHHh
Confidence 799999999999999987654
No 301
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.84 E-value=9.9e-21 Score=158.27 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=78.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
.||||.|+||||+..+++++||||||+.|+......+++++++++++|.+||++||.|+|+.++||| |.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dr-----------it 216 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADR-----------IT 216 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCE-----------EE
Confidence 4899999999999999999999999999999999999999999999999999999999999999988 77
Q ss_pred EeeCceEEeecCh
Q psy6322 81 LMREGVLLAEESP 93 (128)
Q Consensus 81 vl~~G~i~~~~~~ 93 (128)
||++|+.+.+.+.
T Consensus 217 VlRDG~~v~~~~~ 229 (500)
T COG1129 217 VLRDGRVVGTRPT 229 (500)
T ss_pred EEeCCEEeeeccc
Confidence 9999999998873
No 302
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.84 E-value=8.8e-21 Score=141.11 Aligned_cols=66 Identities=42% Similarity=0.676 Sum_probs=61.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.++++.++|.|+|++||+++.+ .+||+
T Consensus 137 ~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~ 202 (206)
T TIGR03608 137 GGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADR 202 (206)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCE
Confidence 6999999999999999999999999999999999999999999877799999999999865 46777
No 303
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=1e-20 Score=161.59 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=73.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||++++..+||| +
T Consensus 456 GGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDr-----------v 524 (590)
T PRK13409 456 GGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDR-----------L 524 (590)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999764 89999999999999999987 6
Q ss_pred EEeeCceEEeecC
Q psy6322 80 GLMREGVLLAEES 92 (128)
Q Consensus 80 ~vl~~G~i~~~~~ 92 (128)
++|++ ++...|+
T Consensus 525 ivl~~-~~~~~g~ 536 (590)
T PRK13409 525 MVFEG-EPGKHGH 536 (590)
T ss_pred EEEcC-cceeeee
Confidence 68864 7776665
No 304
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.84 E-value=1.4e-20 Score=159.09 Aligned_cols=84 Identities=32% Similarity=0.336 Sum_probs=76.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||++||+.++..+.+.|.++ +.|||++||+++++..+||+ ++
T Consensus 164 gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~-----------v~ 229 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGW-----------IL 229 (552)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCe-----------EE
Confidence 79999999999999999999999999999999999999999876 35999999999999999887 77
Q ss_pred EeeCceEE-eecChhHHhh
Q psy6322 81 LMREGVLL-AEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~ 98 (128)
+|++|+++ +.|+.++.++
T Consensus 230 ~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 99999976 7788877654
No 305
>KOG0055|consensus
Probab=99.83 E-value=1.8e-20 Score=168.06 Aligned_cols=86 Identities=29% Similarity=0.582 Sum_probs=81.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||+++||++|||||.||+||.+..+.+.+.|.+.+ .|+|.|++.|.++.+ ++||.|+
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTI------------qnaD~I~ 1195 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTI------------QNADVIA 1195 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhh------------hcCCEEE
Confidence 899999999999999999999999999999999999999999975 589999999999966 6788999
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
|+++|+|++.|+.+++++.
T Consensus 1196 Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1196 VLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred EEECCEEEecccHHHHHhC
Confidence 9999999999999999974
No 306
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.4e-20 Score=142.27 Aligned_cols=95 Identities=28% Similarity=0.481 Sum_probs=87.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||..||..++++.++++||||.++||......+++.+++++++ |+||+++-||++++...+|+ |
T Consensus 138 GGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~-----------I 206 (252)
T COG4604 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDH-----------I 206 (252)
T ss_pred cchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhh-----------e
Confidence 89999999999999999999999999999999999999999999866 99999999999999999988 6
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHH
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAF 109 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~ 109 (128)
+-|++|+++..|++++++.. +.+.+.|
T Consensus 207 VAlK~G~vv~~G~~~eii~~---~~L~eiy 233 (252)
T COG4604 207 VALKNGKVVKQGSPDEIIQP---EILSEIY 233 (252)
T ss_pred eeecCCEEEecCCHHHhcCH---HHHHHHh
Confidence 68999999999999999864 3455555
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.83 E-value=1.5e-20 Score=136.88 Aligned_cols=71 Identities=30% Similarity=0.399 Sum_probs=63.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++ +.|+|++||+++.. .+||+ ++
T Consensus 94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~~d~-----------i~ 158 (166)
T cd03223 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-KFHDR-----------VL 158 (166)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hhCCE-----------EE
Confidence 69999999999999999999999999999999999999999886 58999999999754 57776 77
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|.
T Consensus 159 ~l~~~~ 164 (166)
T cd03223 159 DLDGEG 164 (166)
T ss_pred EEcCCC
Confidence 888764
No 308
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.83 E-value=1.9e-20 Score=157.98 Aligned_cols=86 Identities=31% Similarity=0.520 Sum_probs=77.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||+++|||++.+|+++||||||++||+.+++.+++.+.++. +++|+|++||+++.+ ..|| +|+
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~-~~~d-----------~vi 545 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATV-LKAD-----------RIV 545 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHH-HhCC-----------EEE
Confidence 799999999999999999999999999999999999999999874 589999999999765 3354 588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++++.
T Consensus 546 ~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 546 VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred EEECCEEEeeecHHHHHHc
Confidence 9999999999999988764
No 309
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.83 E-value=2.1e-20 Score=160.39 Aligned_cols=84 Identities=27% Similarity=0.350 Sum_probs=76.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||+.++..+||+ |+
T Consensus 159 gGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~-----------i~ 224 (635)
T PRK11147 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATR-----------IV 224 (635)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCe-----------EE
Confidence 79999999999999999999999999999999999999999987 25999999999999999887 77
Q ss_pred EeeCceEE-eecChhHHhh
Q psy6322 81 LMREGVLL-AEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~ 98 (128)
+|++|+++ +.|+..+...
T Consensus 225 ~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 225 DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 99999997 4687776554
No 310
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=2.8e-20 Score=171.34 Aligned_cols=86 Identities=31% Similarity=0.532 Sum_probs=77.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|++||||||||+||+.+.+.|.+.|.++. .+++|+|++||.++.+ +.||+|
T Consensus 1361 GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti------------~~aD~I 1428 (1466)
T PTZ00265 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASI------------KRSDKI 1428 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHH------------HhCCEE
Confidence 799999999999999999999999999999999999999999986 3689999999999865 345558
Q ss_pred EEeeC----ceEE-eecChhHHhh
Q psy6322 80 GLMRE----GVLL-AEESPASLMA 98 (128)
Q Consensus 80 ~vl~~----G~i~-~~~~~~~l~~ 98 (128)
++|++ |+++ +.|+.+++++
T Consensus 1429 vvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1429 VVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EEEeCCCCCCCEEEEecCHHHHHh
Confidence 89999 9955 7999999986
No 311
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.3e-20 Score=159.46 Aligned_cols=83 Identities=29% Similarity=0.291 Sum_probs=75.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.+.++ +.|||+||||++++..+||+ ++
T Consensus 152 gGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~-----------i~ 217 (638)
T PRK10636 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDK-----------II 217 (638)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCE-----------EE
Confidence 79999999999999999999999999999999999999998875 56999999999999999987 77
Q ss_pred EeeCceEE-eecChhHHh
Q psy6322 81 LMREGVLL-AEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~ 97 (128)
+|++|++. +.|+.....
T Consensus 218 ~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 218 HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEeCCEEEEecCCHHHHH
Confidence 99999996 467766554
No 312
>KOG0059|consensus
Probab=99.82 E-value=4e-20 Score=163.84 Aligned_cols=89 Identities=40% Similarity=0.795 Sum_probs=85.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||+|+++|.|++.+|++++|||||+|+||.+++.+|+++.+++++|+++|++||.++|++.+||| ++
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR-----------~a 769 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTR-----------TA 769 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhh-----------hh
Confidence 7999999999999999999999999999999999999999999998888999999999999999999 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|.+|++.+.|+++++....
T Consensus 770 Imv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 770 IMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred eeecCeeEEecChHHHHhhc
Confidence 99999999999999998543
No 313
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=3.9e-20 Score=156.31 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=73.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||+|||+.++..+.+.|.++. .|||++|||++++..+||+ ++
T Consensus 446 gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~~~~~~~d~-----------i~ 511 (552)
T TIGR03719 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRWFLDRIATH-----------IL 511 (552)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHhCCE-----------EE
Confidence 799999999999999999999999999999999999999999873 3899999999999999987 77
Q ss_pred EeeC-ceEE-eecChhHHh
Q psy6322 81 LMRE-GVLL-AEESPASLM 97 (128)
Q Consensus 81 vl~~-G~i~-~~~~~~~l~ 97 (128)
+|++ |++. +.|+..+..
T Consensus 512 ~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 512 AFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EEECCCeEEEeCCCHHHHH
Confidence 8986 5776 567766554
No 314
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=2.8e-20 Score=138.99 Aligned_cols=67 Identities=33% Similarity=0.343 Sum_probs=62.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++||+||+.+|+++||||||+|||+.++..+++.|.++.++|.|+|++||+++++.+..+|
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 198 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVR 198 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCce
Confidence 6999999999999999999999999999999999999999999877789999999999999775544
No 315
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.82 E-value=1.8e-20 Score=138.35 Aligned_cols=60 Identities=40% Similarity=0.689 Sum_probs=57.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++|.|||++||++++
T Consensus 130 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 699999999999999999999999999999999999999999998779999999999874
No 316
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.82 E-value=3.3e-20 Score=138.44 Aligned_cols=67 Identities=36% Similarity=0.387 Sum_probs=63.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++|||||+.+|+++||||||+|||+..+..+.+.|.+++++|.|+|++||+..+....|++
T Consensus 128 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6999999999999999999999999999999999999999999877799999999999988888887
No 317
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=7.6e-20 Score=168.83 Aligned_cols=87 Identities=29% Similarity=0.368 Sum_probs=79.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||++||+.+.+.|.+.|++.. +++|+|+++|.++.+.. +|+|+
T Consensus 1374 gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~------------~DrIl 1440 (1495)
T PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIID------------CDKIL 1440 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh------------CCEEE
Confidence 699999999999999999999999999999999999999999874 57999999999987643 45588
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+|++.|+++++++..
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred EEECCEEEEECCHHHHHhCC
Confidence 99999999999999998753
No 318
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=5.8e-20 Score=159.92 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=73.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||++|+.+|++|||||||+|||+.++..+.+.+.++ . .|||++|||++++..+||+ ++
T Consensus 630 gGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~dr-----------v~ 695 (718)
T PLN03073 630 GGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDE-----------LW 695 (718)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCE-----------EE
Confidence 79999999999999999999999999999999999998888765 3 4999999999999999887 77
Q ss_pred EeeCceEE-eecChhHH
Q psy6322 81 LMREGVLL-AEESPASL 96 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l 96 (128)
+|++|+++ +.|++++.
T Consensus 696 ~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 696 VVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEECCEEEEeCCCHHHH
Confidence 99999998 67776654
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=99.82 E-value=8.7e-20 Score=169.35 Aligned_cols=86 Identities=27% Similarity=0.364 Sum_probs=79.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||++||+.+.+.|.+.|++.. +++|+|+++|.++.+. .||+|+
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~------------~~DrIl 1443 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII------------DCDRIL 1443 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHH------------hCCEEE
Confidence 699999999999999999999999999999999999999999874 4899999999999774 345588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+|++.|+++++++.
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999999875
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=6.5e-20 Score=155.15 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=75.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||+|||+.++..+++.|.++. | |||++|||++++..+||+ ++
T Consensus 448 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~-----------i~ 513 (556)
T PRK11819 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWFLDRIATH-----------IL 513 (556)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCE-----------EE
Confidence 799999999999999999999999999999999999999999872 4 899999999999999987 77
Q ss_pred EeeC-ceEE-eecChhHHhhc
Q psy6322 81 LMRE-GVLL-AEESPASLMAR 99 (128)
Q Consensus 81 vl~~-G~i~-~~~~~~~l~~~ 99 (128)
+|++ |++. +.|+.++.++.
T Consensus 514 ~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 514 AFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEECCCeEEEecCCHHHHHHH
Confidence 8986 7776 57887776543
No 321
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.82 E-value=1.2e-19 Score=167.63 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=79.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||++||+.+.+.|.+.|++.. +++|+|+++|.++.+. .+|+|+
T Consensus 1424 gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~------------~~DrIl 1490 (1522)
T TIGR00957 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIM------------DYTRVI 1490 (1522)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH------------hCCEEE
Confidence 699999999999999999999999999999999999999998864 5799999999998763 456699
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+|++.|+++++++.
T Consensus 1491 Vld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1491 VLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999875
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.81 E-value=6e-20 Score=169.22 Aligned_cols=73 Identities=27% Similarity=0.439 Sum_probs=66.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|++|||||||++||+.++..+.+.|.++.+ +|+|+|++||+++.+ +.||+ |
T Consensus 582 GGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~-----------I 649 (1466)
T PTZ00265 582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANT-----------I 649 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCE-----------E
Confidence 7999999999999999999999999999999999999999999875 589999999999976 45665 7
Q ss_pred EEeeCc
Q psy6322 80 GLMREG 85 (128)
Q Consensus 80 ~vl~~G 85 (128)
++|++|
T Consensus 650 ivl~~g 655 (1466)
T PTZ00265 650 FVLSNR 655 (1466)
T ss_pred EEEeCC
Confidence 789886
No 323
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.81 E-value=8.8e-20 Score=154.26 Aligned_cols=78 Identities=27% Similarity=0.480 Sum_probs=68.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~-~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||||++.+|+++||||||++||+.+++.+.+.+. .+...|+|+|++||+++.+ ..||+ |
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~-----------i 540 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQ-----------I 540 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCE-----------E
Confidence 799999999999999999999999999999999999988665 4555689999999999854 35555 8
Q ss_pred EEeeCceEEee
Q psy6322 80 GLMREGVLLAE 90 (128)
Q Consensus 80 ~vl~~G~i~~~ 90 (128)
++|++|+++..
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 89999999864
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=1e-19 Score=153.46 Aligned_cols=80 Identities=28% Similarity=0.392 Sum_probs=70.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..+ .++|+|++||+++.+ +.|| +|
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d-----------~i 519 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHAD-----------RL 519 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCC-----------EE
Confidence 7999999999999999999999999999999999999999987653 589999999998754 3455 58
Q ss_pred EEeeCceEEeecC
Q psy6322 80 GLMREGVLLAEES 92 (128)
Q Consensus 80 ~vl~~G~i~~~~~ 92 (128)
++|++|+++....
T Consensus 520 ~~l~~G~i~e~~~ 532 (547)
T PRK10522 520 LEMRNGQLSELTG 532 (547)
T ss_pred EEEECCEEEEecC
Confidence 8999999987643
No 325
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=156.42 Aligned_cols=85 Identities=29% Similarity=0.466 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++|.|++++||+++.+. .||| ++
T Consensus 147 ~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~-----------i~ 214 (648)
T PRK10535 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAER-----------VI 214 (648)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCE-----------EE
Confidence 69999999999999999999999999999999999999999998777999999999999764 4666 88
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
+|++|++...|++++..
T Consensus 215 ~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 215 EIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEECCEEEeecCccccc
Confidence 99999999999988765
No 326
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=1.2e-19 Score=167.14 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=77.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.++++++.|+|||+++|+++ ++...||+ +
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~-----------v 1090 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE-----------L 1090 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999888999999999998 57777777 7
Q ss_pred EEeeC-ceEEeecChh
Q psy6322 80 GLMRE-GVLLAEESPA 94 (128)
Q Consensus 80 ~vl~~-G~i~~~~~~~ 94 (128)
++|++ |++++.|++.
T Consensus 1091 llL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1091 LLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred EEEcCCCEEEEECCcc
Confidence 79986 8999999864
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.81 E-value=1.5e-19 Score=157.40 Aligned_cols=83 Identities=30% Similarity=0.330 Sum_probs=75.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|++|||||||++||+.++..+.+.|.++ +.|||++||+++++..+||+ ++
T Consensus 347 gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~-----------i~ 412 (718)
T PLN03073 347 GGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTD-----------IL 412 (718)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCE-----------EE
Confidence 79999999999999999999999999999999999999999886 68999999999999998887 77
Q ss_pred EeeCceEE-eecChhHHh
Q psy6322 81 LMREGVLL-AEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~ 97 (128)
+|++|++. +.|+.+...
T Consensus 413 ~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 413 HLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEECCEEEEeCCCHHHHH
Confidence 99999996 677766544
No 328
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.81 E-value=1.3e-19 Score=166.50 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=80.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCH-HHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYI-EEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l-~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.+++|+
T Consensus 212 GGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~----------- 280 (1394)
T TIGR00956 212 GGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK----------- 280 (1394)
T ss_pred cccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce-----------
Confidence 89999999999999999999999999999999999999999999864 99999999996 788888887
Q ss_pred EEEeeCceEEeecChhHHh
Q psy6322 79 IGLMREGVLLAEESPASLM 97 (128)
Q Consensus 79 v~vl~~G~i~~~~~~~~l~ 97 (128)
+++|++|++++.|+++++.
T Consensus 281 v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 281 VIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEEeCCeEEEECCHHHHH
Confidence 7799999999999988773
No 329
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=1e-19 Score=136.27 Aligned_cols=65 Identities=32% Similarity=0.380 Sum_probs=61.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++||+|++.+|+++||||||+|||+.++..+++.|.++.++|.|+|++||+++++.. |+
T Consensus 130 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~ 194 (207)
T PRK13539 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--AR 194 (207)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--Cc
Confidence 699999999999999999999999999999999999999999987779999999999998865 55
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.2e-19 Score=140.08 Aligned_cols=80 Identities=36% Similarity=0.586 Sum_probs=74.8
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN--GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~--g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||+.|||||+.+|++||||||++|||+.++..+.+.+.++... +.++++|||..+++-...++ +
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th-----------~ 243 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH-----------R 243 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccce-----------E
Confidence 9999999999999999999999999999999999999999999744 89999999999999888776 8
Q ss_pred EEeeCceEEeecC
Q psy6322 80 GLMREGVLLAEES 92 (128)
Q Consensus 80 ~vl~~G~i~~~~~ 92 (128)
..+++|+++..|.
T Consensus 244 lll~~g~v~~~g~ 256 (257)
T COG1119 244 LLLKEGEVVAQGK 256 (257)
T ss_pred EEeeCCceeeccc
Confidence 8999999998874
No 331
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=2.7e-19 Score=148.47 Aligned_cols=80 Identities=30% Similarity=0.554 Sum_probs=77.0
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGL 81 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~v 81 (128)
|+||||.|.++|.++|++|||||||+-|-|.....+++.++.++++|+|||++||.++|+.++||| +.|
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDr-----------vTV 212 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADR-----------VTV 212 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCe-----------eEE
Confidence 899999999999999999999999999999999999999999999999999999999999999998 779
Q ss_pred eeCceEEeecC
Q psy6322 82 MREGVLLAEES 92 (128)
Q Consensus 82 l~~G~i~~~~~ 92 (128)
|++|+++...+
T Consensus 213 LR~Gkvvgt~~ 223 (501)
T COG3845 213 LRRGKVVGTVD 223 (501)
T ss_pred EeCCeEEeeec
Confidence 99999987665
No 332
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=2.7e-19 Score=134.78 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=69.4
Q ss_pred ChHhHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHh
Q psy6322 1 GGQQRRTSLAVALLH----------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYC 70 (128)
Q Consensus 1 gG~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~ 70 (128)
+||+||+++|+||+. +|+++||||||+|||+..+..+.+.+.+++++|.|+|++||+++++..+||+
T Consensus 126 ~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~--- 202 (213)
T cd03279 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQR--- 202 (213)
T ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcE---
Confidence 699999999999985 5789999999999999999999999999977799999999999999888877
Q ss_pred hhhhhcceEEEeeCceE
Q psy6322 71 EEARQAHIIGLMREGVL 87 (128)
Q Consensus 71 ~~~~~~~~v~vl~~G~i 87 (128)
+.++++|.+
T Consensus 203 --------i~~~~~~~~ 211 (213)
T cd03279 203 --------LEVIKTPGG 211 (213)
T ss_pred --------EEEEecCCC
Confidence 778998854
No 333
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.80 E-value=2.4e-19 Score=159.46 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=80.1
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+||+.||++|+.+| +++||||||+||||..+..+.++|+++++.|.|||+++|+++++. .||+
T Consensus 492 gGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~----------- 559 (943)
T PRK00349 492 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADY----------- 559 (943)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE-----------
Confidence 69999999999999997 999999999999999999999999999888999999999999874 4665
Q ss_pred EEEe------eCceEEeecChhHHhhc
Q psy6322 79 IGLM------REGVLLAEESPASLMAR 99 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~~ 99 (128)
|++| ++|++++.|+++++...
T Consensus 560 vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 560 IVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred EEEeccccCCCCCEEeeccCHHHHhcC
Confidence 8899 99999999999988653
No 334
>PTZ00243 ABC transporter; Provisional
Probab=99.80 E-value=5.8e-19 Score=163.51 Aligned_cols=86 Identities=27% Similarity=0.410 Sum_probs=78.0
Q ss_pred ChHhHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHN-PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~-p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++ |++|||||||++||+.+.+.|.+.|.+.. +++|+|+++|.++.+. .+|+|
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~------------~~DrI 1514 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVA------------QYDKI 1514 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHH------------hCCEE
Confidence 6999999999999996 89999999999999999999999999864 4799999999998663 34558
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+|++.|++++++..
T Consensus 1515 lVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1515 IVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred EEEECCEEEEECCHHHHHhC
Confidence 89999999999999999864
No 335
>PRK13409 putative ATPase RIL; Provisional
Probab=99.80 E-value=2e-19 Score=153.70 Aligned_cols=73 Identities=29% Similarity=0.444 Sum_probs=68.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||+||+.+|+++||||||++||+..+..+.+.|+++.+ |+|||++||+++++..+||+ +.
T Consensus 215 gGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~-----------v~ 282 (590)
T PRK13409 215 GGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADN-----------VH 282 (590)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987 99999999999999999988 66
Q ss_pred EeeCc
Q psy6322 81 LMREG 85 (128)
Q Consensus 81 vl~~G 85 (128)
+|+++
T Consensus 283 vl~~~ 287 (590)
T PRK13409 283 IAYGE 287 (590)
T ss_pred EEeCC
Confidence 88763
No 336
>KOG0057|consensus
Probab=99.80 E-value=3.4e-19 Score=149.49 Aligned_cols=85 Identities=29% Similarity=0.512 Sum_probs=79.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||++|||++.+|+++++|||||.||-.+.+.+.+.+... ..|+|+|++-|+++.+ +.+|.|+
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~ll------------~~~DkI~ 556 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLDLL------------KDFDKII 556 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecchhH------------hcCCEEE
Confidence 89999999999999999999999999999999999999999983 4689999999999954 5677799
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
++++|++...|+.++++.
T Consensus 557 ~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 557 VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEECCeeEEeccHHHHhh
Confidence 999999999999999987
No 337
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=2.8e-19 Score=158.81 Aligned_cols=86 Identities=27% Similarity=0.443 Sum_probs=79.7
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+||+.||++|+.+| +++||||||+|||+..+..+.+.|.+++++|.|||+++|+++++. .||+
T Consensus 490 GGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~----------- 557 (924)
T TIGR00630 490 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADY----------- 557 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCE-----------
Confidence 79999999999999996 899999999999999999999999999888999999999999875 6766
Q ss_pred EEEe------eCceEEeecChhHHhh
Q psy6322 79 IGLM------REGVLLAEESPASLMA 98 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~ 98 (128)
+++| ++|+|++.|+++++..
T Consensus 558 vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 558 VIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEEecccccCCCCEEeeccCHHHHhc
Confidence 7899 9999999999988754
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=2.7e-19 Score=164.32 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=76.0
Q ss_pred ChHhHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH-HHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPD-LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE-ARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~-lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~-~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++||++|+.+|+ +|+|||||+|||+.++..+.+.|++++++|+|||+++|+++. +.+.||+
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~----------- 972 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDR----------- 972 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCE-----------
Confidence 699999999999999997 999999999999999999999999998789999999999986 4466766
Q ss_pred EEEeeCc-eEEeecChh
Q psy6322 79 IGLMREG-VLLAEESPA 94 (128)
Q Consensus 79 v~vl~~G-~i~~~~~~~ 94 (128)
+++|++| ++++.|++.
T Consensus 973 vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 973 LLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred EEEEcCCCEEEEECCcc
Confidence 7799997 999999864
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=7.4e-19 Score=162.30 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=78.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||++||+.+...|.+.|++.. +++|||+++|.++.+.. | |+|+
T Consensus 1356 gGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~-----------DrIl 1422 (1490)
T TIGR01271 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLE-C-----------QQFL 1422 (1490)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-C-----------CEEE
Confidence 699999999999999999999999999999999999999999864 47999999999987643 4 4588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+|+..|++.++++.
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred EEECCEEEEeCCHHHHHcC
Confidence 9999999999999999863
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.79 E-value=4.2e-19 Score=152.43 Aligned_cols=82 Identities=26% Similarity=0.269 Sum_probs=73.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||++|+.+|++|||||||+|||+.++..+.+.+.++ +.|||++|||++++..+||+ ++
T Consensus 443 gGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~-----------i~ 508 (635)
T PRK11147 443 GGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTE-----------CW 508 (635)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCE-----------EE
Confidence 79999999999999999999999999999999999999999876 45999999999999999887 77
Q ss_pred Eee-CceEEe-ecChhHH
Q psy6322 81 LMR-EGVLLA-EESPASL 96 (128)
Q Consensus 81 vl~-~G~i~~-~~~~~~l 96 (128)
+|+ +|++.. .|+.++.
T Consensus 509 ~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 509 IFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEeCCCeEEEccCCHHHH
Confidence 897 799865 5666654
No 341
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.1e-18 Score=130.39 Aligned_cols=90 Identities=31% Similarity=0.530 Sum_probs=84.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||+||+.|||-|+..|+++++||||.|||...+.++.++++.+..+ |.+++++|||+..+.-+++| .
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~r-----------l 222 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADR-----------L 222 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhc-----------c
Confidence 79999999999999999999999999999999999999999999855 99999999999999988888 5
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
.+|..|+++..|-.+.++.++.
T Consensus 223 mvmk~g~vve~GLTDrvLDDP~ 244 (258)
T COG4107 223 MVMKQGQVVESGLTDRVLDDPH 244 (258)
T ss_pred eeecCCCEeccccccccccCCC
Confidence 5999999999999888887654
No 342
>PLN03232 ABC transporter C family member; Provisional
Probab=99.78 E-value=8.6e-19 Score=161.91 Aligned_cols=86 Identities=30% Similarity=0.457 Sum_probs=74.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDR-LVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~-l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||||+..+|+++||||||++||+.+.+.+++. +... .+++|+|++||+++.+ +.||+|
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l------------~~aD~I 809 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFL------------PLMDRI 809 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhH------------HhCCEE
Confidence 7999999999999999999999999999999999887665 5443 4689999999999854 234558
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|+.++++..
T Consensus 810 i~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 810 ILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEEeCCEEEEecCHHHHHhc
Confidence 89999999999999998754
No 343
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=4.5e-19 Score=132.09 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=60.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|||+||++||||++.+|+++||||||+|||+.++..+.+.|.+++++|.|+|++||+...+.. ||.
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 699999999999999999999999999999999999999999987779999999999887644 543
No 344
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=2.1e-18 Score=153.47 Aligned_cols=88 Identities=27% Similarity=0.424 Sum_probs=81.0
Q ss_pred ChHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||+||++||++|+.+| +++||||||+|||+..+..+++.|.++.++|.|||++||+++++. .||+
T Consensus 833 gGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~---------- 901 (943)
T PRK00349 833 GGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADW---------- 901 (943)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCE----------
Confidence 69999999999999999 999999999999999999999999999878999999999999874 4655
Q ss_pred eEEEe------eCceEEeecChhHHhhcc
Q psy6322 78 IIGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
+++| ++|++++.|+++++....
T Consensus 902 -ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 902 -IIDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred -EEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 8899 799999999999998654
No 345
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.77 E-value=6e-19 Score=131.09 Aligned_cols=61 Identities=38% Similarity=0.383 Sum_probs=57.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
||||||++||+|++.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+...+
T Consensus 130 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 6999999999999999999999999999999999999999999877799999999998643
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=7.2e-19 Score=162.06 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=80.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCH-HHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYI-EEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l-~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.++++++ .|+|+|+++|++ +++..++|+
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~----------- 407 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD----------- 407 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe-----------
Confidence 8999999999999999999999999999999999999999999975 589999999996 688889988
Q ss_pred EEEeeCceEEeecChhHHh
Q psy6322 79 IGLMREGVLLAEESPASLM 97 (128)
Q Consensus 79 v~vl~~G~i~~~~~~~~l~ 97 (128)
|++|++|++++.|+.+++.
T Consensus 408 vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEEeeCceEEEeCCHHHHH
Confidence 7799999999999988875
No 347
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=132.04 Aligned_cols=83 Identities=33% Similarity=0.542 Sum_probs=74.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||+.|||||+.+|++|+||||+++||..+++.+.+++.++.. .|+.++++||+++|+.-+++| +
T Consensus 135 GGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatr-----------L 203 (259)
T COG4525 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATR-----------L 203 (259)
T ss_pred chHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhhe-----------e
Confidence 8999999999999999999999999999999999999999999864 599999999999999989888 5
Q ss_pred EEee--CceEEeecChh
Q psy6322 80 GLMR--EGVLLAEESPA 94 (128)
Q Consensus 80 ~vl~--~G~i~~~~~~~ 94 (128)
++|+ .|||+..-+++
T Consensus 204 vvlsp~pgRvv~~~~~d 220 (259)
T COG4525 204 VVLSPGPGRVVERLPLD 220 (259)
T ss_pred EEecCCCceeeEecCCC
Confidence 5776 46888766554
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=1.4e-18 Score=160.80 Aligned_cols=87 Identities=30% Similarity=0.430 Sum_probs=77.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM--TENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~--~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++||||++.+|+++||||||++||+...+.+++.+.+. ..+|+|+|++||+++.+.. ||+
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~----------- 830 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDV----------- 830 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCE-----------
Confidence 79999999999999999999999999999999999999998754 2358999999999987643 555
Q ss_pred EEEeeCceEEeecChhHHhhc
Q psy6322 79 IGLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 79 v~vl~~G~i~~~~~~~~l~~~ 99 (128)
|++|++|+++..|+++++.+.
T Consensus 831 ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 831 IIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred EEEecCCeEEeeCCHHHHHhc
Confidence 889999999999999988753
No 349
>PLN03130 ABC transporter C family member; Provisional
Probab=99.77 E-value=2.4e-18 Score=159.88 Aligned_cols=86 Identities=29% Similarity=0.454 Sum_probs=74.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIW-DRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~-~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||||+..+|+++||||||++||+...+.++ +.+... .+|+|+|++||+++.+ ..||+|
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~-l~~kTvIlVTH~l~~l------------~~aD~I 809 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE-LRGKTRVLVTNQLHFL------------SQVDRI 809 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-hcCCEEEEEECCHhHH------------HhCCEE
Confidence 79999999999999999999999999999999888775 455554 3589999999999754 234558
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++...|+.+++++.
T Consensus 810 i~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 810 ILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EEEeCCEEEEeCCHHHHHhc
Confidence 89999999999999998754
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=131.26 Aligned_cols=88 Identities=24% Similarity=0.433 Sum_probs=82.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
.|||||+.|+..++++|++|+||||++|+-........++++.++ .+.+|+++.|||.++..+++| |.
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~Fvr~~A~~-----------VT 217 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMGFVREIADK-----------VT 217 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHHHHHHhhhe-----------eE
Confidence 499999999999999999999999999999999999999999985 468999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
||+.|.++++|+.+++..++
T Consensus 218 Vlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 218 VLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred EEeccceeecccHHHhhcCc
Confidence 99999999999999988764
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=2e-18 Score=159.47 Aligned_cols=85 Identities=36% Similarity=0.499 Sum_probs=76.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDR-LVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~-l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++||||++.+|+++||||||+|||+..++.+++. +.++. +|+|+|++||+++.+.. ||+ |
T Consensus 551 gGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~-ad~-----------i 617 (1490)
T TIGR01271 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK-ADK-----------I 617 (1490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh-CCE-----------E
Confidence 7999999999999999999999999999999999999985 56654 58999999999997743 555 8
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|+++++..
T Consensus 618 i~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 618 LLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 8999999999999998875
No 352
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=9.7e-19 Score=129.82 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=58.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL 63 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~ 63 (128)
||||||++||+|++.+|+++||||||+|||+.++..+.+.+.+..++|.|+|++||+++++..
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 699999999999999999999999999999999999999998766679999999999987654
No 353
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=2.7e-18 Score=127.63 Aligned_cols=78 Identities=37% Similarity=0.553 Sum_probs=69.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||+||||+||||++..|++|+.||||.+||-.+-.+|.+++-.+. +.|.|.+++|||...+ .-|+| +
T Consensus 149 GGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R-----------~ 216 (228)
T COG4181 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDR-----------Q 216 (228)
T ss_pred chHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhh-----------e
Confidence 799999999999999999999999999999999999999999987 4599999999998844 34444 7
Q ss_pred EEeeCceEEee
Q psy6322 80 GLMREGVLLAE 90 (128)
Q Consensus 80 ~vl~~G~i~~~ 90 (128)
+-|..|+++.+
T Consensus 217 ~r~~~G~l~~~ 227 (228)
T COG4181 217 LRLRSGRLVED 227 (228)
T ss_pred eeeecceeccC
Confidence 79999999753
No 354
>KOG0061|consensus
Probab=99.76 E-value=2.9e-18 Score=147.18 Aligned_cols=87 Identities=38% Similarity=0.608 Sum_probs=81.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH-HHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI-EEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l-~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||.-|+++|.+|+|||||+|||......+.+.+++++++|+|||++-|.+ .++.++.|+++
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~---------- 242 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL---------- 242 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh----------
Confidence 7999999999999999999999999999999999999999999998899999999998 67889999955
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
+|.+|++++.|+++++..
T Consensus 243 -lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 243 -LLSEGEVVYSGSPRELLE 260 (613)
T ss_pred -hhcCCcEEEecCHHHHHH
Confidence 899999999999987754
No 355
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=3.5e-18 Score=158.56 Aligned_cols=86 Identities=36% Similarity=0.504 Sum_probs=80.0
Q ss_pred ChHhHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALL---HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~---~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||+||++||++|+ .+|+++||||||+|||+..+..+++.|.+++++|.|||++||+++++ .+||+
T Consensus 812 GGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDr---------- 880 (1809)
T PRK00635 812 GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADY---------- 880 (1809)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCE----------
Confidence 69999999999998 69999999999999999999999999999988899999999999988 67776
Q ss_pred eEEEee------CceEEeecChhHHhh
Q psy6322 78 IIGLMR------EGVLLAEESPASLMA 98 (128)
Q Consensus 78 ~v~vl~------~G~i~~~~~~~~l~~ 98 (128)
+++|. +|++++.|+++++..
T Consensus 881 -Vi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 881 -VLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred -EEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 77895 899999999999875
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=3.9e-18 Score=158.03 Aligned_cols=87 Identities=28% Similarity=0.377 Sum_probs=74.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++.+|+++||||||++||+.....+++.+.....+|+|+|++||+++.+. .||+ |+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~-----------ii 852 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADY-----------VV 852 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCE-----------EE
Confidence 79999999999999999999999999999999988887643322235899999999999763 4555 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++...|++++++..
T Consensus 853 ~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EEECCEEEEecCHHHHHhC
Confidence 9999999999999998753
No 357
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=4.6e-18 Score=151.10 Aligned_cols=84 Identities=30% Similarity=0.461 Sum_probs=76.8
Q ss_pred ChHhHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLH---NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~---~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||+||+.||++|+. +|+++||||||+|||+..+..+++.|.++.++|.|||++||+++++. .||+
T Consensus 831 gGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~---------- 899 (924)
T TIGR00630 831 GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADY---------- 899 (924)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE----------
Confidence 699999999999997 59999999999999999999999999999888999999999999773 4655
Q ss_pred eEEEe------eCceEEeecChhHH
Q psy6322 78 IIGLM------REGVLLAEESPASL 96 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l 96 (128)
+++| ++|++++.|+++++
T Consensus 900 -ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 900 -IIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred -EEEecCCccCCCCEEEEeCCHHHh
Confidence 8899 79999999998764
No 358
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.74 E-value=3.6e-18 Score=143.13 Aligned_cols=65 Identities=37% Similarity=0.554 Sum_probs=60.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+ +.||+
T Consensus 461 gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~ 525 (529)
T TIGR02857 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALA-ERADR 525 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHH-HhCCE
Confidence 799999999999999999999999999999999999999999875 589999999999876 35666
No 359
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=8.5e-18 Score=156.08 Aligned_cols=86 Identities=31% Similarity=0.465 Sum_probs=79.0
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+||+.||++|+.+| +++||||||+|||+..+..+.+.|+++++.|.|||++||+++ +.++||+
T Consensus 479 GGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~-vi~~aDr----------- 546 (1809)
T PRK00635 479 GGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ-MISLADR----------- 546 (1809)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhCCE-----------
Confidence 69999999999999999 899999999999999999999999999888999999999998 5577776
Q ss_pred EEEee------CceEEeecChhHHhh
Q psy6322 79 IGLMR------EGVLLAEESPASLMA 98 (128)
Q Consensus 79 v~vl~------~G~i~~~~~~~~l~~ 98 (128)
+++|. +|++++.|++++++.
T Consensus 547 Vi~L~pGag~~gG~Iv~~G~~~eil~ 572 (1809)
T PRK00635 547 IIDIGPGAGIFGGEVLFNGSPREFLA 572 (1809)
T ss_pred EEEEcCCcccCCCEEEEecCHHHHhh
Confidence 77885 889999999988764
No 360
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.74 E-value=7.8e-18 Score=140.60 Aligned_cols=87 Identities=29% Similarity=0.426 Sum_probs=80.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||+++||||..+|.+++||||-++||......+.+.|...+++|.|+|++||.++. ...+|+ |.
T Consensus 475 gGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~-L~~~Dk-----------il 542 (580)
T COG4618 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA-LASVDK-----------IL 542 (580)
T ss_pred chHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHH-Hhhcce-----------ee
Confidence 799999999999999999999999999999999999999999999999999999999884 345555 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++-..|+.+++..+
T Consensus 543 vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 543 VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred eecCChHHhcCCHHHHHHH
Confidence 9999999999999888764
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=2e-17 Score=139.94 Aligned_cols=85 Identities=35% Similarity=0.416 Sum_probs=76.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||.||++|+||+.+|++|||||||+.||..+...+.+.|.++ +| |+|+||||..++..+|++ |+
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~-----------I~ 221 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATH-----------IL 221 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhh-----------eE
Confidence 79999999999999999999999999999999999999999865 46 999999999999999998 77
Q ss_pred EeeCceEE-eecChhHHhhc
Q psy6322 81 LMREGVLL-AEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~~ 99 (128)
-++.|++. +.|+.+..++.
T Consensus 222 ~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 222 ELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred EecCCceeEecCCHHHHHHH
Confidence 99999866 46777666543
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-17 Score=136.32 Aligned_cols=86 Identities=30% Similarity=0.518 Sum_probs=80.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+||||+|||+++.+|++++|||.||+||-.+.+.|...+++.. .|+|.+++.|.++.+ -.||.|+
T Consensus 402 ggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti------------~~adeii 468 (497)
T COG5265 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTI------------IDADEII 468 (497)
T ss_pred CchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhc------------cCCceEE
Confidence 899999999999999999999999999999999999999999975 689999999999965 3678899
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
||++|+|++.|+.++++..
T Consensus 469 vl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 469 VLDNGRIVERGTHEELLAA 487 (497)
T ss_pred EeeCCEEEecCcHHHHHHc
Confidence 9999999999999999875
No 363
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.72 E-value=1.3e-17 Score=143.92 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=57.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||||++|||||+++|+++||||||+|||+..+..+.+.+++ .|.|+|++||+++.+ +.||+
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~-~~~d~ 647 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLW-KYHEY 647 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHH-HhCCE
Confidence 7999999999999999999999999999999999999998876 389999999999975 45665
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.72 E-value=2.1e-17 Score=123.73 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=59.3
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v 68 (128)
||||||++||++++ ..|+++||||||+|||+..+..+.+.++++.+ +.|||++||+++++ ..||++
T Consensus 116 ~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~-~~~d~v 185 (197)
T cd03278 116 GGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTM-EAADRL 185 (197)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHH-hhcceE
Confidence 69999999999997 46699999999999999999999999999864 68999999999976 478873
No 365
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=1.2e-17 Score=125.12 Aligned_cols=73 Identities=23% Similarity=0.253 Sum_probs=64.6
Q ss_pred ChHhHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CcEEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVAL----LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN---GKTVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~---g~tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
+|||||++||+|+ +.+|+++||||||+|||+..+..+.+.|.++.++ +.||+++||+++++..+ |+
T Consensus 112 ~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~------ 184 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DD------ 184 (198)
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cc------
Confidence 6999999999999 5899999999999999999999999999998643 46899999999988765 66
Q ss_pred hhcceEEEeeCc
Q psy6322 74 RQAHIIGLMREG 85 (128)
Q Consensus 74 ~~~~~v~vl~~G 85 (128)
|.+|..+
T Consensus 185 -----v~~~~~~ 191 (198)
T cd03276 185 -----VKVFRMK 191 (198)
T ss_pred -----eeEEEec
Confidence 7788764
No 366
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=3.2e-17 Score=125.27 Aligned_cols=81 Identities=30% Similarity=0.497 Sum_probs=75.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||-++++.|.++.|++|+|||.|++|||.....+++.-.++.++ +.|.+|+||+|+.+-.+.+| .
T Consensus 151 GGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~R-----------l 219 (263)
T COG1101 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR-----------L 219 (263)
T ss_pred chHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCe-----------E
Confidence 89999999999999999999999999999999999999999999855 89999999999999877776 7
Q ss_pred EEeeCceEEeecC
Q psy6322 80 GLMREGVLLAEES 92 (128)
Q Consensus 80 ~vl~~G~i~~~~~ 92 (128)
++|+.|+|+.+-+
T Consensus 220 ImLh~G~IvlDv~ 232 (263)
T COG1101 220 IMLHSGKIVLDVT 232 (263)
T ss_pred EEEeCCeEEEEcc
Confidence 7999999998754
No 367
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=2.4e-17 Score=125.54 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=59.6
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||||||++||+|++. +|+++||||||+|||+..+..+++.+.++.+ +.++|++||.. ++..+||+++
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~-~~~~~~d~i~ 231 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP-ELLEVADKFY 231 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHhhCCEEE
Confidence 699999999999973 5899999999999999999999999999865 78889888885 5778999865
No 368
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=4.2e-17 Score=125.44 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=60.5
Q ss_pred ChHhHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHH
Q psy6322 1 GGQQRRTSLAVALLHN----PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~ia~al~~~----p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v 68 (128)
+|||||++||++++.+ |+++||||||+|||+..+..+.+.|.+++++|.++|++||+.+. ...||++
T Consensus 158 ~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d~i 228 (247)
T cd03275 158 GGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKADAL 228 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCCeE
Confidence 6999999999999875 89999999999999999999999999997669999999999665 4678774
No 369
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.70 E-value=7.3e-17 Score=121.34 Aligned_cols=66 Identities=27% Similarity=0.283 Sum_probs=59.6
Q ss_pred ChHhHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRR------TSLAVALLHNPDLLILDEPTVGLDPVLSK-SIWDRLVEMTEN-GKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qr------v~ia~al~~~p~lllLDEPt~gLD~~~~~-~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~ 67 (128)
+||+|| +++|+|++.+|++++|||||+|||+..+. .+.+.+.++.++ |.|+|++||+++.+ ..||+
T Consensus 118 ~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~ 191 (204)
T cd03240 118 GGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV-DAADH 191 (204)
T ss_pred ccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-hhCCE
Confidence 699996 78999999999999999999999999999 999999998766 89999999998865 35666
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.70 E-value=6.3e-17 Score=124.49 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=59.6
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
+|||||++||+||+ .+|+++||||||+|||+..+..+.+.+.++. +|.|+|++||+ .++...||+++
T Consensus 169 ~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~-~~~~~~~d~v~ 239 (251)
T cd03273 169 GGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK-EGMFNNANVLF 239 (251)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC-HHHHHhCCEEE
Confidence 69999999999998 5789999999999999999999999999985 58999999999 55666788844
No 371
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.69 E-value=3.4e-17 Score=137.24 Aligned_cols=57 Identities=40% Similarity=0.634 Sum_probs=53.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
||||||++||||++++|+++|||||||+||+.+.+.+.+.+.+. .+++|+|++||++
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 79999999999999999999999999999999999999999986 3579999999974
No 372
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-16 Score=122.17 Aligned_cols=87 Identities=30% Similarity=0.534 Sum_probs=78.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+|+|..|+.+++.+|++.|||||-||||..+-+.+.+.+.+++++|.+++++||.-..+..+ ..|+|.
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i----------~pD~vh 216 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI----------KPDKVH 216 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc----------CCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999986644222 357799
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
||-+|+|+..|++ ++..
T Consensus 217 vl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 217 VLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred EEECCEEEecCCH-HHHH
Confidence 9999999999998 6664
No 373
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.8e-16 Score=122.31 Aligned_cols=87 Identities=26% Similarity=0.452 Sum_probs=83.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
.||+-|++++.|...+|++||+||-.+-.|+..+++..+.+.++.++++|+|++||+++.+.++||| ++
T Consensus 150 SGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~-----------~i 218 (249)
T COG1134 150 SGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDR-----------AI 218 (249)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCe-----------eE
Confidence 4999999999999999999999999999999999999999999988889999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|++...|++++...
T Consensus 219 ~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 219 WLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred EEeCCEEEEcCCHHHHHH
Confidence 999999999999988764
No 374
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=2.4e-16 Score=118.64 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=84.7
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||..+|+++|.||..++||...+..+.+++.++.++ |.+.|+++.++..+..++|. |+
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~-----------vi 221 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQ-----------VL 221 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhccc-----------EE
Confidence 8999999999999999999999999999999999999999999855 99999999999999999988 77
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
||+.|++++.|++.+++..+.
T Consensus 222 VM~EG~vvE~G~t~~v~a~P~ 242 (267)
T COG4167 222 VMHEGEVVERGSTADVLASPL 242 (267)
T ss_pred EEecCceeecCChhhhhcCCc
Confidence 999999999999999998764
No 375
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=4.5e-17 Score=123.43 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=67.6
Q ss_pred ChHhHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-cEEEEEeCCHHHHHHHHhHHHhhhhh
Q psy6322 1 GGQQRRTSLAVAL----LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-G-KTVMITTHYIEEARLLCAKLYCEEAR 74 (128)
Q Consensus 1 gG~~qrv~ia~al----~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g-~tvi~~sH~l~~~~~~~d~v~~~~~~ 74 (128)
+||||++.++.++ +.+|+++|+||||+|||+..+..+++.+.++.++ | .|+|++||++.++.+.||++
T Consensus 129 ~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~------ 202 (213)
T cd03277 129 GGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM------ 202 (213)
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce------
Confidence 6999998877554 5899999999999999999999999999998765 5 58999999999888888873
Q ss_pred hcceEEEeeCce
Q psy6322 75 QAHIIGLMREGV 86 (128)
Q Consensus 75 ~~~~v~vl~~G~ 86 (128)
+|++|.+|+
T Consensus 203 ---~v~~l~~g~ 211 (213)
T cd03277 203 ---TVLCVYNGP 211 (213)
T ss_pred ---EEEEEecCc
Confidence 488999886
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=2.4e-16 Score=119.30 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=57.7
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
+|||||++||+|++. .|++++|||||+|||+..+..+++.+.++. ++.|+|++||+ .++..+|||
T Consensus 130 ~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~-~~~~~~~d~ 198 (212)
T cd03274 130 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLR-NNMFELADR 198 (212)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECc-HHHHHhCCE
Confidence 599999999999974 479999999999999999999999999985 56889999998 467778877
No 377
>KOG0056|consensus
Probab=99.67 E-value=1.9e-16 Score=132.65 Aligned_cols=87 Identities=24% Similarity=0.490 Sum_probs=80.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+||||+|||+++.+|.+++|||.||+||-.+.+.|...+.++++ ++|-|++.|.++.+ -+||-|.
T Consensus 677 GGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTi------------vnAD~IL 743 (790)
T KOG0056|consen 677 GGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTI------------VNADLIL 743 (790)
T ss_pred CcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehhe------------ecccEEE
Confidence 8999999999999999999999999999999999999999999975 68888899999954 4689999
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
++++|+|++.|+.+++....
T Consensus 744 vi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 744 VISNGRIVERGRHEELLKRD 763 (790)
T ss_pred EEeCCeEeecCcHHHHHhcc
Confidence 99999999999999998763
No 378
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.65 E-value=6.9e-16 Score=114.05 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=60.6
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v 68 (128)
+||+||+++|++++ .+|+++|+|||++|||+..+..+.+.+.++.+.|.|+|++||+++.+ ..+|++
T Consensus 97 ~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrv 167 (178)
T cd03239 97 GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKL 167 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeE
Confidence 69999999999996 69999999999999999999999999999876689999999998866 467763
No 379
>KOG0054|consensus
Probab=99.63 E-value=1e-15 Score=139.68 Aligned_cols=87 Identities=29% Similarity=0.507 Sum_probs=76.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||+++|||+.+++|++|||.|+|++|.-..+.+++..-.-.-+++|+|++||.++.+ +.||.|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L------------~~ad~Ii 713 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL------------PHADQII 713 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh------------hhCCEEE
Confidence 8999999999999999999999999999998877776666555455689999999988854 5678899
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+|...|+.+++++.
T Consensus 714 vl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred EecCCeEecccCHHHHHhc
Confidence 9999999999999999853
No 380
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=8.3e-16 Score=117.94 Aligned_cols=89 Identities=24% Similarity=0.447 Sum_probs=83.7
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|+-|||+||.|++.+|++||.||||+.++|.++.+++.++.++.. +|.||+++|||+..+.++||+ +.
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~-----------i~ 230 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK-----------IN 230 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhh-----------eE
Confidence 788999999999999999999999999999999999999999974 499999999999999999998 77
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
||--|.-+..+..+++.+.+.
T Consensus 231 VlYCGQ~~ESa~~e~l~~~Ph 251 (330)
T COG4170 231 VLYCGQTVESAPSEELVTMPH 251 (330)
T ss_pred EEEecccccccchhHHhcCCC
Confidence 999999999999999988765
No 381
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=111.91 Aligned_cols=76 Identities=28% Similarity=0.362 Sum_probs=70.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||+|||.+++|-|..-|++|+|||||++||+.+++.|.++|-++. .+..+|+.+|||-+++.+.+|| +
T Consensus 136 GGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k-----------~ 204 (223)
T COG4619 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADK-----------V 204 (223)
T ss_pred chHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhhe-----------E
Confidence 899999999999999999999999999999999999999999987 6699999999999998888887 6
Q ss_pred EEeeCceE
Q psy6322 80 GLMREGVL 87 (128)
Q Consensus 80 ~vl~~G~i 87 (128)
+-+..|.+
T Consensus 205 itl~~G~~ 212 (223)
T COG4619 205 ITLQPGHA 212 (223)
T ss_pred EEeccCcc
Confidence 67777665
No 382
>KOG0054|consensus
Probab=99.61 E-value=2.6e-15 Score=136.99 Aligned_cols=87 Identities=28% Similarity=0.422 Sum_probs=80.4
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGL 81 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~v 81 (128)
||||.+++||||++++++|+|||+|+++|+.+-..|.+.|++.-+ +.||+.+.|.++.+ -++|||.|
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~TV------------md~DrVlV 1345 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNTV------------MDSDRVLV 1345 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccchh------------hhcCeEEE
Confidence 999999999999999999999999999999999999999999653 69999999999976 35688999
Q ss_pred eeCceEEeecChhHHhhccC
Q psy6322 82 MREGVLLAEESPASLMARRN 101 (128)
Q Consensus 82 l~~G~i~~~~~~~~l~~~~~ 101 (128)
|++|+|++.++|.+++++..
T Consensus 1346 ld~G~v~EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSDKD 1365 (1381)
T ss_pred eeCCeEeecCChHHHHhCCc
Confidence 99999999999999998653
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=125.95 Aligned_cols=84 Identities=35% Similarity=0.559 Sum_probs=80.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||++||+-+||-|..+|++||+-+||.|||..+.+.|.+.|.+.+++|++|+++|-|++|+..+||| |+
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDr-----------Ia 474 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDR-----------IA 474 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhhe-----------ee
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred EeeCceEEeecChhH
Q psy6322 81 LMREGVLLAEESPAS 95 (128)
Q Consensus 81 vl~~G~i~~~~~~~~ 95 (128)
||.+|+++...++++
T Consensus 475 Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 475 VIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeCCceeccccccc
Confidence 999999998887765
No 384
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=3.3e-15 Score=116.75 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=63.8
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhc
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQA 76 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~ 76 (128)
|||+||+++|++++. +|++++||||++|||+..+..+.+.+.++. ++.|+|++||+++. ...||+
T Consensus 173 ~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~-~~~~d~--------- 241 (276)
T cd03241 173 GGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQV-AAMADN--------- 241 (276)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHH-HHhcCc---------
Confidence 699999999987654 999999999999999999999999999985 47899999999984 467776
Q ss_pred ceEEEeeCceE
Q psy6322 77 HIIGLMREGVL 87 (128)
Q Consensus 77 ~~v~vl~~G~i 87 (128)
+++|.+|..
T Consensus 242 --~~~l~~~~~ 250 (276)
T cd03241 242 --HFLVEKEVE 250 (276)
T ss_pred --EEEEEEecC
Confidence 667777643
No 385
>KOG0927|consensus
Probab=99.60 E-value=4.2e-15 Score=125.04 Aligned_cols=85 Identities=27% Similarity=0.369 Sum_probs=75.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||+|.|+++||+|..+|++|+|||||++||+.+...+.+.+.++... +++++||.-+.+-.+|.+|+
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi~sh~QDfln~vCT~Ii----------- 290 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVIVSHSQDFLNGVCTNII----------- 290 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEEEecchhhhhhHhhhhh-----------
Confidence 79999999999999999999999999999999999999999887432 89999999999999999966
Q ss_pred EeeCce-EEeecChhHHhh
Q psy6322 81 LMREGV-LLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~-i~~~~~~~~l~~ 98 (128)
-|.+++ +.+.|+.+....
T Consensus 291 ~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred eecccceeeecCCHHHHhh
Confidence 588888 667787776543
No 386
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.60 E-value=8.9e-15 Score=106.06 Aligned_cols=66 Identities=35% Similarity=0.485 Sum_probs=60.1
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
+||+||++++++|+. +|+++|+|||++|+|+..+..+.+.+.++..++.++|++||+++.+. .+|+
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~ 149 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADK 149 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhh
Confidence 699999999999987 78999999999999999999999999998655899999999999765 4677
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.60 E-value=4.7e-15 Score=110.72 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=67.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIW-DRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~-~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+||+|+..++++ +.+|+++++|||++|+|+..+..+. ..+.++.+.|.++|++||+ .++..+||+ +
T Consensus 94 ~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~-----------~ 160 (200)
T cd03280 94 SHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELKAYAYK-----------R 160 (200)
T ss_pred HHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhc-----------C
Confidence 489999999987 4899999999999999999999986 5677777679999999998 567788888 5
Q ss_pred EEeeCceEEeec
Q psy6322 80 GLMREGVLLAEE 91 (128)
Q Consensus 80 ~vl~~G~i~~~~ 91 (128)
.+|++|++..++
T Consensus 161 ~~l~~g~l~~~~ 172 (200)
T cd03280 161 EGVENASMEFDP 172 (200)
T ss_pred CCeEEEEEEEec
Confidence 588999998764
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.59 E-value=5.4e-15 Score=125.21 Aligned_cols=82 Identities=28% Similarity=0.369 Sum_probs=71.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||.|+.+|+.|+.+|.+|||||||+-||+.+...+.+.|..+ ..|||+||||..++.++|++ ++
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~-----------i~ 507 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATR-----------IW 507 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcce-----------EE
Confidence 89999999999999999999999999999999999999999887 46999999999999999987 77
Q ss_pred EeeCceEEee-cChhHHh
Q psy6322 81 LMREGVLLAE-ESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~-~~~~~l~ 97 (128)
.+.+ ++... |+..+..
T Consensus 508 ~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 508 LVED-KVEEFEGGYEDYL 524 (530)
T ss_pred EEcC-ceeEcCCCHHHHH
Confidence 8887 54443 6655443
No 389
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.58 E-value=6.6e-15 Score=125.24 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=65.4
Q ss_pred ChHhHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhc
Q psy6322 1 GGQQRRTSLAVALLHN----PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQA 76 (128)
Q Consensus 1 gG~~qrv~ia~al~~~----p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~ 76 (128)
|||+||++||++++.. |+++|||||++|||+..+..+.+.|.++. ++.+||++||++..+. .||+
T Consensus 443 gGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~-~ad~--------- 511 (563)
T TIGR00634 443 GGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAA-HADA--------- 511 (563)
T ss_pred HhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHH-hcCe---------
Confidence 7999999999999986 69999999999999999999999999986 4899999999998764 6776
Q ss_pred ceEEEeeCce
Q psy6322 77 HIIGLMREGV 86 (128)
Q Consensus 77 ~~v~vl~~G~ 86 (128)
+++|++|.
T Consensus 512 --~~~l~k~~ 519 (563)
T TIGR00634 512 --HFKVEKEG 519 (563)
T ss_pred --EEEEEEcc
Confidence 77888765
No 390
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.3e-14 Score=130.61 Aligned_cols=67 Identities=27% Similarity=0.214 Sum_probs=64.2
Q ss_pred ChHhHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLH----------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|||++|++||+||+. +|++|||||||+|||+.+...+.+.|.++...|++|+++||++++...+|++
T Consensus 953 gGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~ 1029 (1042)
T TIGR00618 953 GGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHR 1029 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCE
Confidence 799999999999986 7999999999999999999999999999987899999999999999999988
No 391
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.56 E-value=2e-15 Score=112.93 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=79.8
Q ss_pred ChHhHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVALLH-------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al~~-------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
||+.|||-+|...++ ..+++|+|||.++||...+..+..++.+++..|.+|||++||++.-.+-+|+
T Consensus 128 GGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~------ 201 (248)
T COG4138 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHR------ 201 (248)
T ss_pred cccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHH------
Confidence 799999999987775 3479999999999999999999999999999999999999999987777776
Q ss_pred hhcceEEEeeCceEEeecChhHHhhc
Q psy6322 74 RQAHIIGLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 74 ~~~~~v~vl~~G~i~~~~~~~~l~~~ 99 (128)
++++..|++...|..++++..
T Consensus 202 -----~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 202 -----AWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred -----HHHHhcCeEEeecchhhhcCh
Confidence 779999999999999998864
No 392
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.52 E-value=3.2e-14 Score=119.78 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=57.2
Q ss_pred ChHhHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALL----------HNPDLLILDEPT-VGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~----------~~p~lllLDEPt-~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|||+||++||++|+ .+|+++|||||| ++||+..+..+.+.|.++ .|.|||++||+.+.. ..||+
T Consensus 471 ~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~-~~~d~ 545 (562)
T PHA02562 471 QGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDP-QKFDR 545 (562)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhch-hhhhc
Confidence 79999999999988 599999999998 789999999999999998 589999999996644 45676
No 393
>PRK10869 recombination and repair protein; Provisional
Probab=99.50 E-value=6.9e-14 Score=119.03 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=64.1
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhc
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQA 76 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~ 76 (128)
|||+||++||++++. +|+++|||||++|||+.....+.+.+.++. ++.+||++||++..+ .+||+
T Consensus 433 gGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~-~~ad~--------- 501 (553)
T PRK10869 433 GGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVA-GCGHQ--------- 501 (553)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCE---------
Confidence 799999999999997 589999999999999999999999999985 479999999999855 67776
Q ss_pred ceEEEeeCce
Q psy6322 77 HIIGLMREGV 86 (128)
Q Consensus 77 ~~v~vl~~G~ 86 (128)
.+.+.++.
T Consensus 502 --~~~v~k~~ 509 (553)
T PRK10869 502 --HFFVSKET 509 (553)
T ss_pred --EEEEeccc
Confidence 56777643
No 394
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4.8e-14 Score=105.03 Aligned_cols=67 Identities=25% Similarity=0.399 Sum_probs=65.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||+||||.|||+++.+=++|+|||||+.||..+++.+.++|.+.+++|.+++=+-||-+.=+.+|||
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR 221 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADR 221 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999998999999999999988889998
No 395
>KOG0062|consensus
Probab=99.49 E-value=6e-14 Score=117.56 Aligned_cols=84 Identities=30% Similarity=0.356 Sum_probs=71.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||.|=|+++||||..+||+|||||||+-||..+...+.+.|..+ +.|+|+||||..++..+|..|+
T Consensus 201 GGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~tdII----------- 266 (582)
T KOG0062|consen 201 GGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNFLNTVCTDII----------- 266 (582)
T ss_pred cchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHHHHHHHHHHH-----------
Confidence 89999999999999999999999999999999999999888875 4899999999999999999965
Q ss_pred EeeCceEE-eecChhHHhh
Q psy6322 81 LMREGVLL-AEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~ 98 (128)
-+++-++- +.|+.+++..
T Consensus 267 H~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 267 HLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHhhhhhhhhcCcHHHHHH
Confidence 34544443 3566666554
No 396
>KOG0062|consensus
Probab=99.49 E-value=7.5e-14 Score=116.98 Aligned_cols=75 Identities=31% Similarity=0.469 Sum_probs=70.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||-||++|....++|.+|+|||||+-||..+...+.+.|+.+ +..||+||||.+++..+|+. ++
T Consensus 485 GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E-----------~W 550 (582)
T KOG0062|consen 485 GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKE-----------LW 550 (582)
T ss_pred CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCce-----------eE
Confidence 89999999999999999999999999999999999998888876 46899999999999999988 89
Q ss_pred EeeCceEEe
Q psy6322 81 LMREGVLLA 89 (128)
Q Consensus 81 vl~~G~i~~ 89 (128)
++.+|++..
T Consensus 551 vve~g~vt~ 559 (582)
T KOG0062|consen 551 VVEDGKVTP 559 (582)
T ss_pred EEcCCcEEe
Confidence 999999986
No 397
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=2.5e-13 Score=124.77 Aligned_cols=67 Identities=31% Similarity=0.381 Sum_probs=61.7
Q ss_pred ChHhH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQR------RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-----ENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-----~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||||| |++||++|+.+|++++|||||+|||+.+...+.+.|..+. ..|.|||++||+++++..+|..
T Consensus 1202 ~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~ 1279 (1311)
T TIGR00606 1202 AGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRS 1279 (1311)
T ss_pred hhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhc
Confidence 69999 9999999999999999999999999999999999998874 2378999999999999999854
No 398
>PRK03918 chromosome segregation protein; Provisional
Probab=99.46 E-value=2e-13 Score=120.22 Aligned_cols=66 Identities=30% Similarity=0.316 Sum_probs=57.5
Q ss_pred ChHhHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRR------TSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qr------v~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|||+++ +++|++++.+|+++||||||+|||+..+..+.+.|..+...+.+||++||+++ +...||+
T Consensus 791 ~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~-~~~~~d~ 862 (880)
T PRK03918 791 GGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE-LKDAADY 862 (880)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHhCCe
Confidence 799994 55566888999999999999999999999999999998766889999999987 4566776
No 399
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=4.4e-13 Score=117.12 Aligned_cols=87 Identities=30% Similarity=0.451 Sum_probs=79.7
Q ss_pred ChHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
||+.||+.+|.-|..+. -++||||||.||-+.-.+++.+.|.++...|.|||++.|+|+.+ +.||
T Consensus 825 GGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI------------k~AD 892 (935)
T COG0178 825 GGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI------------KTAD 892 (935)
T ss_pred chHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE------------eecC
Confidence 89999999999999888 99999999999999999999999999999999999999999954 5667
Q ss_pred eEEEe------eCceEEeecChhHHhhc
Q psy6322 78 IIGLM------REGVLLAEESPASLMAR 99 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~ 99 (128)
+|+=| ..|.|++.|+|+++.+.
T Consensus 893 ~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 893 WIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred EEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 77665 68999999999999874
No 400
>KOG0927|consensus
Probab=99.44 E-value=1.4e-13 Score=115.90 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=70.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+|||.||.+|+.++..|.+|+|||||+|||+.....+.+.|.++ ..++|++|||.-.+.+++++ ++
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeE-----------i~ 577 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEE-----------IW 577 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHH-----------hH
Confidence 59999999999999999999999999999999999999999987 35899999999999999999 55
Q ss_pred EeeCceEE-eecChh
Q psy6322 81 LMREGVLL-AEESPA 94 (128)
Q Consensus 81 vl~~G~i~-~~~~~~ 94 (128)
++.+|.+. +.|+..
T Consensus 578 ~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 578 VCENGTVTKWDGDIE 592 (614)
T ss_pred hhccCceeecCccHH
Confidence 67777654 455543
No 401
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=4.1e-13 Score=104.68 Aligned_cols=75 Identities=25% Similarity=0.273 Sum_probs=61.4
Q ss_pred ChHhHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 1 GGQQRRTSLAVALL---------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 1 gG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
+||||++++|++|+ .+|+++||||||++||+..+..+.+.+.++. .+++++|+...+..+|.
T Consensus 186 ~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~~----- 256 (270)
T cd03242 186 QGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALWL----- 256 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchhc-----
Confidence 59999999999985 7999999999999999999999999998752 46777777777777760
Q ss_pred hhhhcceEEEeeCceE
Q psy6322 72 EARQAHIIGLMREGVL 87 (128)
Q Consensus 72 ~~~~~~~v~vl~~G~i 87 (128)
...+++.+++|++
T Consensus 257 ---~~~~i~~l~~g~i 269 (270)
T cd03242 257 ---RRAQIFRVDAGTL 269 (270)
T ss_pred ---cCccEEEEeCcEE
Confidence 1123778899986
No 402
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.41 E-value=8.5e-13 Score=119.17 Aligned_cols=67 Identities=30% Similarity=0.308 Sum_probs=60.2
Q ss_pred ChHhHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLH--------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~--------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|||+++++||+||+. +|+++|+||||+|||+.....+++.|..+...|+||++|||..+...++..+
T Consensus 952 gGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 952 GGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 799999999999996 8999999999999999999999999999988899999999966655555444
No 403
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.41 E-value=7.9e-13 Score=117.81 Aligned_cols=67 Identities=25% Similarity=0.360 Sum_probs=60.3
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
|||+++++||++++ ..|+++|||||++|||+..+..+.++|.++.+ +.++|++||++..+ ..||+++
T Consensus 1092 ~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~-~~~d~~~ 1162 (1179)
T TIGR02168 1092 GGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTM-EVADQLY 1162 (1179)
T ss_pred ccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHH-HHhhhHe
Confidence 79999999999985 66799999999999999999999999999864 57899999999875 6799976
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.39 E-value=1.3e-12 Score=97.61 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=65.9
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIW-DRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~-~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
++.|++..+.+++.+|+++|||||++|+|+.....+. .++..+.+.+.++|++||+.+.+. .+++ +.
T Consensus 94 ~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~-----------~~ 161 (202)
T cd03243 94 AELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQ-----------VP 161 (202)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-Hhhc-----------CC
Confidence 3556677888889999999999999999999888775 456666667899999999976554 5655 55
Q ss_pred EeeCceEEeecChhHHh
Q psy6322 81 LMREGVLLAEESPASLM 97 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~ 97 (128)
.++.|++...++..++.
T Consensus 162 ~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 162 GVKNLHMEELITTGGLT 178 (202)
T ss_pred CeEEEEEEEEecCCeee
Confidence 78888888887654443
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=1.5e-12 Score=99.35 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=62.8
Q ss_pred ChHhHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhh
Q psy6322 1 GGQQRRTSLAVAL--LHNPDLLILDEP---TVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEAR 74 (128)
Q Consensus 1 gG~~qrv~ia~al--~~~p~lllLDEP---t~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~ 74 (128)
.||++++.+++++ +.+|+++||||| |+++|+.+... ..+..+.+ .|.++|++||+ .++.++||+
T Consensus 92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~-~el~~~~~~------- 161 (222)
T cd03285 92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF-HELTALADE------- 161 (222)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech-HHHHHHhhc-------
Confidence 4789999999999 899999999999 88899888853 33444543 48999999995 888889988
Q ss_pred hcceEEEeeCceEEeecC
Q psy6322 75 QAHIIGLMREGVLLAEES 92 (128)
Q Consensus 75 ~~~~v~vl~~G~i~~~~~ 92 (128)
+..+++|++...++
T Consensus 162 ----~~~i~~g~~~~~~~ 175 (222)
T cd03285 162 ----VPNVKNLHVTALTD 175 (222)
T ss_pred ----CCCeEEEEEEEEEe
Confidence 44688888876654
No 406
>PRK01156 chromosome segregation protein; Provisional
Probab=99.38 E-value=1.7e-12 Score=115.12 Aligned_cols=68 Identities=26% Similarity=0.339 Sum_probs=57.8
Q ss_pred ChHhHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-cEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSL------AVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-EN-G-KTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~i------a~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~-g-~tvi~~sH~l~~~~~~~d~v~ 69 (128)
|||+++++| |++|+.+|++++|||||+|||+..+..+.+++.... .. | .++|++||+++.+ ..||+++
T Consensus 804 ~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii 880 (895)
T PRK01156 804 GGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAY 880 (895)
T ss_pred HhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEE
Confidence 799999875 589999999999999999999999999999998754 33 3 4899999999866 5787733
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.37 E-value=2.4e-12 Score=107.20 Aligned_cols=67 Identities=30% Similarity=0.445 Sum_probs=64.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||+.||++||.+++++++++++|||++-||+..+-.....++++.+.+++||++.||+..+.-++|-
T Consensus 216 GGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 216 GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred chHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 8999999999999999999999999999999999999999999988799999999999998888875
No 408
>KOG0065|consensus
Probab=99.37 E-value=4.1e-13 Score=121.68 Aligned_cols=97 Identities=27% Similarity=0.370 Sum_probs=80.9
Q ss_pred hHhHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhHHHhhhhhhcceE
Q psy6322 2 GQQRRTSLAVALLHNP-DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 2 G~~qrv~ia~al~~~p-~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~v~~~~~~~~~~v 79 (128)
.||||+.||.-|+.+| .+|+|||||||||..+...+++++++++..|+||+.+-|.++ .+.+-.|+++.
T Consensus 933 eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL--------- 1003 (1391)
T KOG0065|consen 933 EQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL--------- 1003 (1391)
T ss_pred HHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH---------
Confidence 6999999999999999 999999999999999999999999999999999999999984 57777888653
Q ss_pred EEeeCceEEeecChhHHhhccCcchHHHHHHHHh
Q psy6322 80 GLMREGVLLAEESPASLMARRNVDSLETAFLQLS 113 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (128)
+=++|+.++.|++.+-. ..+.++|....
T Consensus 1004 -LkrGGqtVY~G~lG~~s-----~~li~YFes~~ 1031 (1391)
T KOG0065|consen 1004 -LKRGGQTVYFGPLGENS-----SKLIEYFESIG 1031 (1391)
T ss_pred -HhcCCeEEEecCccccc-----HHHHHHHHhcC
Confidence 33567899999876532 34555555444
No 409
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.2e-12 Score=96.76 Aligned_cols=58 Identities=36% Similarity=0.397 Sum_probs=55.9
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
|||+||+|||-.+..+++.|||||+++||..++..+-.++...+.+|.-||.+||..-
T Consensus 134 GQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred hHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 9999999999999999999999999999999999999999999888999999999864
No 410
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.34 E-value=3.1e-12 Score=106.57 Aligned_cols=67 Identities=30% Similarity=0.422 Sum_probs=63.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||+.|||+||.+|+.++++++||||++-||...+-.+...|+++.. +++|.+++.||+-.+.-++||
T Consensus 458 GGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr 525 (591)
T COG1245 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDR 525 (591)
T ss_pred chhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhce
Confidence 8999999999999999999999999999999999999999999984 489999999999998888887
No 411
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.34 E-value=1.2e-12 Score=96.00 Aligned_cols=62 Identities=32% Similarity=0.481 Sum_probs=56.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEeCCHHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIEEAR 62 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH~l~~~~ 62 (128)
||||.||++-|+|+..|+.++||||+|.||..-+..+.+..-.- ++.|..++++|||.+.+.
T Consensus 137 GGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 137 GGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred cchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 89999999999999999999999999999999999999887654 566999999999999763
No 412
>PRK00064 recF recombination protein F; Reviewed
Probab=99.29 E-value=1.1e-11 Score=100.48 Aligned_cols=75 Identities=29% Similarity=0.359 Sum_probs=63.7
Q ss_pred ChHhHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 1 GGQQRRTSLAVALL---------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 1 gG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
.||+|++.+|++|+ .+|+++|||||+++||+..+..+.+.+.++ +..++++||+.+.+...++
T Consensus 276 ~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~----- 347 (361)
T PRK00064 276 TGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLE----- 347 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhc-----
Confidence 49999999999986 799999999999999999999999988764 4589999999987766543
Q ss_pred hhhhcceEEEeeCceE
Q psy6322 72 EARQAHIIGLMREGVL 87 (128)
Q Consensus 72 ~~~~~~~v~vl~~G~i 87 (128)
.++++.|++|++
T Consensus 348 ----~~~i~~v~~G~i 359 (361)
T PRK00064 348 ----NAKIFHVEQGKI 359 (361)
T ss_pred ----cCcEEEEeCCEE
Confidence 234788999987
No 413
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.28 E-value=8.6e-12 Score=111.65 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||||++++||++|+. .|+++|||||++|||+.++..+.++|.++.. +.++|++||+...+ .+||+++
T Consensus 1077 gge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1077 GGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred cchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHH-HhcceeE
Confidence 899999999999985 6899999999999999999999999999854 57899999998644 7888865
No 414
>PRK02224 chromosome segregation protein; Provisional
Probab=99.21 E-value=4.8e-11 Score=105.48 Aligned_cols=66 Identities=30% Similarity=0.384 Sum_probs=56.9
Q ss_pred ChHhH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc-EEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQR------RTSLAVALLHN-----P-DLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~q------rv~ia~al~~~-----p-~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~-tvi~~sH~l~~~~~~~d~ 67 (128)
||||+ |++++++++.+ | +++||||||++||+..+..+.++|..+...|. +||++||+.+.+. .||+
T Consensus 784 ~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~-~ad~ 862 (880)
T PRK02224 784 GGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG-AADD 862 (880)
T ss_pred ccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH-hcCe
Confidence 79999 88888888864 3 67999999999999999999999999876564 7999999998774 5776
No 415
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.20 E-value=3.4e-11 Score=103.14 Aligned_cols=65 Identities=31% Similarity=0.425 Sum_probs=57.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
+|||||+++||.++++|++++|||.|++||+.....+++.+++-. .+.|||.++|... +..+.++
T Consensus 518 ~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t-l~~~h~~ 582 (604)
T COG4178 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT-LWNFHSR 582 (604)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh-hHHHHhh
Confidence 699999999999999999999999999999999999999999854 4799999999754 5555554
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.19 E-value=1.2e-10 Score=86.19 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=46.1
Q ss_pred HHHHHhc--CCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHC-CcEEEEEeCCHHHHHHHHhH
Q psy6322 9 LAVALLH--NPDLLILDEPTVGLDPVLSKSI-WDRLVEMTEN-GKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 9 ia~al~~--~p~lllLDEPt~gLD~~~~~~i-~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~ 67 (128)
+++++.. +|+++|+|||++|+|+.....+ ..+++++.++ +.++|++||+++ +.++|++
T Consensus 69 l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~ 130 (185)
T smart00534 69 TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADE 130 (185)
T ss_pred HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhc
Confidence 4445544 9999999999999999977775 5566667664 899999999985 7777774
No 417
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.18 E-value=2.2e-10 Score=100.45 Aligned_cols=99 Identities=27% Similarity=0.418 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHN--PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~--p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||+.||+-+|.-+-.+ -=+++||||+.||-+.--.++.+.|+++++.|.|+|+|.||.+.+ ..||+
T Consensus 484 GGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti-~~AD~----------- 551 (935)
T COG0178 484 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTI-RAADH----------- 551 (935)
T ss_pred hhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHH-hhcCE-----------
Confidence 7999999999988665 458899999999999999999999999999999999999997754 45555
Q ss_pred EEE------eeCceEEeecChhHHhhccCcchHHHHHHHHh
Q psy6322 79 IGL------MREGVLLAEESPASLMARRNVDSLETAFLQLS 113 (128)
Q Consensus 79 v~v------l~~G~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 113 (128)
|+= .+.|.|+++|++++++... .++...|+.-.
T Consensus 552 iIDiGPgAG~~GGeIv~~Gtp~~i~~~~--~SlTG~YLsg~ 590 (935)
T COG0178 552 IIDIGPGAGEHGGEIVAEGTPEELLANP--ESLTGQYLSGK 590 (935)
T ss_pred EEeeCCCCCcCCCEEEEccCHHHHHhCC--cchhhHhhcCC
Confidence 543 4789999999999999864 36666665433
No 418
>KOG2355|consensus
Probab=99.17 E-value=1.3e-10 Score=89.06 Aligned_cols=86 Identities=27% Similarity=0.399 Sum_probs=77.4
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||+||.|+..|++--++|+|||-|-.||..++..+.+++++-++ +|.||++.||-.+=++.+.++ ++
T Consensus 151 GqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpth-----------l~ 219 (291)
T KOG2355|consen 151 GQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTH-----------LV 219 (291)
T ss_pred cchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchh-----------EE
Confidence 899999999999999999999999999999999999999999985 499999999999988888777 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
.|.+|+++-.-+.+++.+
T Consensus 220 yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 220 YIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred EecCCeeeeccccchhhh
Confidence 999999998655555443
No 419
>KOG0066|consensus
Probab=99.16 E-value=4.2e-11 Score=100.07 Aligned_cols=58 Identities=36% Similarity=0.479 Sum_probs=53.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
|||+.||++|-.-+..|++|||||||++||+.+...+.+.|.++. ..|||+|||-..+
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERLI 764 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEeccccee
Confidence 899999999999999999999999999999999999999999873 5799999997754
No 420
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=1.1e-10 Score=94.93 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=54.3
Q ss_pred ChHhHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHH
Q psy6322 1 GGQQRRTSLAVALLH---------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEAR 62 (128)
Q Consensus 1 gG~~qrv~ia~al~~---------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~ 62 (128)
.||+|++.+|.+|+. +|+++|||||+++||+..+..+++.+.+. |.+++++||+++.+.
T Consensus 278 ~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 278 QGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 499999999999999 99999999999999999999999998754 679999999998654
No 421
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.13 E-value=3.4e-10 Score=84.95 Aligned_cols=60 Identities=28% Similarity=0.288 Sum_probs=48.9
Q ss_pred HHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 5 RRTSLAVALLH--NPDLLILDEPTVGLDPVLSKSIW-DRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 5 qrv~ia~al~~--~p~lllLDEPt~gLD~~~~~~i~-~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
+++.-+...+. +|+++|+|||++|+|+..+..+. .+++++.+.|.|+|++||+++++..+
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 45555555555 99999999999999999998764 57888777799999999999988654
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=7.8e-10 Score=83.47 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=51.8
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSI-WDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i-~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
||+| +..+.+++.+|+++|||||++|+|+.....+ +..+..+.+.|.++|++||+.+.+..+++
T Consensus 95 e~~~-~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 95 EMSE-TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHH-HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 5554 5666778899999999999999999766654 55677777779999999999998876654
No 423
>KOG0066|consensus
Probab=99.05 E-value=1.2e-10 Score=97.31 Aligned_cols=75 Identities=33% Similarity=0.380 Sum_probs=67.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||.|-||++||||..+|-+|+|||||+-||..+.-.+-+.++.|. +|.+++|||-.++..+|+.|+
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VCtdII----------- 480 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVCTDII----------- 480 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHHHHHh-----------
Confidence 799999999999999999999999999999999998888888774 599999999999999999955
Q ss_pred EeeCceEEe
Q psy6322 81 LMREGVLLA 89 (128)
Q Consensus 81 vl~~G~i~~ 89 (128)
-|++-++-+
T Consensus 481 HLD~qkLhy 489 (807)
T KOG0066|consen 481 HLDNQKLHY 489 (807)
T ss_pred hhhhhhhhh
Confidence 567666544
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.05 E-value=9.7e-10 Score=83.29 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=53.0
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC---CcEEEEEeCCHHHHHHHH
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLS-KSIWDRLVEMTEN---GKTVMITTHYIEEARLLC 65 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~-~~i~~~l~~~~~~---g~tvi~~sH~l~~~~~~~ 65 (128)
+.||++++++++.+|+++|||||++|+|+... ..+...++++.+. +.++|++||+++.+....
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 56999999999999999999999999999764 4456788888654 358999999999887664
No 425
>KOG0065|consensus
Probab=99.03 E-value=2.3e-10 Score=104.20 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=78.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCH-HHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYI-EEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l-~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||+||+++-+++.+|+++.+||+|.|||..+.-++.+.++++... +.|++++-+.. +++..+.|+
T Consensus 263 GGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~----------- 331 (1391)
T KOG0065|consen 263 GGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDD----------- 331 (1391)
T ss_pred CcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhh-----------
Confidence 89999999999999999999999999999999999999999999755 77877776665 678888888
Q ss_pred EEEeeCceEEeecChhHHhh
Q psy6322 79 IGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 79 v~vl~~G~i~~~~~~~~l~~ 98 (128)
|.+|.+|++++.|+.++.+.
T Consensus 332 v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 332 VILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeeccceEEeccHHHHHH
Confidence 77999999999999888764
No 426
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.1e-09 Score=90.46 Aligned_cols=77 Identities=31% Similarity=0.491 Sum_probs=67.4
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||+++..|++-+.|++++||=.+..||..++.+++.+.-. ++.|+||+.+|||=. -...+|| ..
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~-YF~~ADr-----------ll 519 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH-YFIHADR-----------LL 519 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch-hhhhHHH-----------HH
Confidence 9999999999999999999999999999999999999887775 466999999999954 4556666 55
Q ss_pred EeeCceEEee
Q psy6322 81 LMREGVLLAE 90 (128)
Q Consensus 81 vl~~G~i~~~ 90 (128)
-|.+|+++..
T Consensus 520 ~~~~G~~~e~ 529 (546)
T COG4615 520 EMRNGQLSEL 529 (546)
T ss_pred HHhcCceeec
Confidence 7999999864
No 427
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.96 E-value=2e-09 Score=81.70 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=52.5
Q ss_pred HHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEE
Q psy6322 8 SLAVAL--LHNPDLLILDEP---TVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHIIGL 81 (128)
Q Consensus 8 ~ia~al--~~~p~lllLDEP---t~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~v 81 (128)
.++.++ +.+|+++||||| |+++|+.. ....++..+.+. +.++|++||+. ++..++++ +.-
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~--~~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~-----------~~~ 164 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAIVEYLHEKIGAKTLFATHYH-ELTELEGK-----------LPR 164 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHH--HHHHHHHHHHhccCCcEEEEeCcH-HHHHHhhc-----------CCC
Confidence 344444 579999999999 77788754 234455555555 89999999996 56677776 334
Q ss_pred eeCceEEeecChhHHh
Q psy6322 82 MREGVLLAEESPASLM 97 (128)
Q Consensus 82 l~~G~i~~~~~~~~l~ 97 (128)
+.+|++...++.+++.
T Consensus 165 v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 165 VKNFHVAVKEKGGGVV 180 (216)
T ss_pred eEEEEEEEEeeCCeEE
Confidence 5677776666555553
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.90 E-value=4.4e-09 Score=92.96 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=57.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWD-RLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
+||+|++.|++++ .+|+++|||||++|+||.....+.. ++..+.+.|.++|++||+.+.....+++
T Consensus 393 ~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~ 459 (782)
T PRK00409 393 GHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNR 459 (782)
T ss_pred HHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcC
Confidence 4899999999988 8999999999999999999988854 5666767799999999998888777765
No 429
>PRK14079 recF recombination protein F; Provisional
Probab=98.88 E-value=5.7e-09 Score=84.43 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=58.1
Q ss_pred ChHhHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 1 GGQQRRTSLAVALL---------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 1 gG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
+||++++.+|..|+ .+|++++||||+++||+..+..+.+.+.... .++|.+|+..+ .
T Consensus 266 ~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~~----~------- 331 (349)
T PRK14079 266 RGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAPP----G------- 331 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCCC----C-------
Confidence 59999999999999 8999999999999999999999998886532 35555444322 3
Q ss_pred hhhhcceEEEeeCceEEeecC
Q psy6322 72 EARQAHIIGLMREGVLLAEES 92 (128)
Q Consensus 72 ~~~~~~~v~vl~~G~i~~~~~ 92 (128)
++++..+.+|++..+.+
T Consensus 332 ----~~~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 332 ----AALTLRIEAGVFTPEAP 348 (349)
T ss_pred ----CceEEEEeccEecCCCC
Confidence 45588899988865543
No 430
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.84 E-value=6.5e-09 Score=96.28 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=50.1
Q ss_pred ChHhHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 1 GGQQRRTS----LAVA--------LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 1 gG~~qrv~----ia~a--------l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
|||||+++ +|++ +..+|++++|||||+|+|+..+..++++|.++ |.++||+||.+.
T Consensus 1250 gGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1250 GGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSEREW 1317 (1353)
T ss_pred chHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccchh
Confidence 89999996 5644 55899999999999999999999999999887 789999999874
No 431
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.81 E-value=2.1e-08 Score=72.94 Aligned_cols=59 Identities=32% Similarity=0.458 Sum_probs=52.0
Q ss_pred hHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 2 GQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 2 G~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
|++|.+.++.++...+ .++++|||-++|.|..+..+.+.|.+....+.-+|++||.+..
T Consensus 240 G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 240 GEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp HHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchh
Confidence 8999988888887777 8999999999999999999999998876558899999999874
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.78 E-value=2.2e-08 Score=75.04 Aligned_cols=66 Identities=35% Similarity=0.395 Sum_probs=49.7
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v 68 (128)
||||..++||.-|+ ..++++|||||.++||+..+..+.+.|.+..+ ..-+|++||+.. +...+|+.
T Consensus 139 gGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~-~~~~a~~~ 208 (220)
T PF02463_consen 139 GGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPE-MFEDADKL 208 (220)
T ss_dssp HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HH-HHTT-SEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccccccc
Confidence 69999999987653 56899999999999999999999999998854 578999999865 44455553
No 433
>KOG0060|consensus
Probab=98.77 E-value=1.4e-08 Score=86.75 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=52.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+||+||+++||.+.++|++.||||-|+++|......+++.+++ .|.|.|-|+|.-+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL 629 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSL 629 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHH
Confidence 5999999999999999999999999999999999999988875 48999999997663
No 434
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.71 E-value=2.2e-08 Score=72.70 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTVGLD---PVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~gLD---~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+.....+...+|+++++|||++.+| +..+..+.+++..+++.|.|+|+++|....
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 4444445667999999999999999 888888999998888889999999998764
No 435
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.70 E-value=4.5e-08 Score=86.52 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=51.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSI-WDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i-~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
+||+++..|++++ .+|+++|||||++|+||.....+ ..++..+.+.|.++|++||+.+..
T Consensus 388 ~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 388 GHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 4788888887766 79999999999999999999998 567777777799999999998753
No 436
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.66 E-value=4.2e-08 Score=73.32 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=41.6
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPT-----VGLDPVLSKSIWDRLVEMT 45 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt-----~gLD~~~~~~i~~~l~~~~ 45 (128)
-+++++.||++++.+|+++++|||| +||||..++.+.+.+.+++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3778899999999999999999999 9999999999999999985
No 437
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.65 E-value=7.2e-08 Score=85.65 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=64.7
Q ss_pred HHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH--HHhHHHhhhhhhcceEEEeeCceE
Q psy6322 11 VALLHNPDLLILDEPTVGL-DPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL--LCAKLYCEEARQAHIIGLMREGVL 87 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~gL-D~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~--~~d~v~~~~~~~~~~v~vl~~G~i 87 (128)
..+..+|+++++|||+.+| |+..+..+.+.++..++.|.+++++||+++++.. .++.+ .+.|++.++|.+|++
T Consensus 647 ~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i----~~~~~t~i~L~n~~a 722 (818)
T PRK13830 647 KRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVL----KESCPTKICLPNGAA 722 (818)
T ss_pred HhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHH----HhcCCeEEECCCccc
Confidence 3457899999999999999 6999999999999998889999999999998863 22221 245777889999998
Q ss_pred EeecCh
Q psy6322 88 LAEESP 93 (128)
Q Consensus 88 ~~~~~~ 93 (128)
...+..
T Consensus 723 ~~~~~~ 728 (818)
T PRK13830 723 REPGTR 728 (818)
T ss_pred cccchH
Confidence 766543
No 438
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.62 E-value=1.6e-07 Score=71.75 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHC-CcEEEEEeCCHHHHHHHHh
Q psy6322 4 QRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDR-LVEMTEN-GKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~-l~~~~~~-g~tvi~~sH~l~~~~~~~d 66 (128)
.++++-....+.+|+++|||||++|.++.....+... ++.+.+. +.++|++||+++.+..++.
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 4555555556789999999999999999998888777 6666665 8999999999998887763
No 439
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.5e-07 Score=84.22 Aligned_cols=66 Identities=30% Similarity=0.373 Sum_probs=54.7
Q ss_pred ChHhHHHHHHHHH------hcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVAL------LHN--PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al------~~~--p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||++=.++||.+| ..+ -++++|||||..||+.....+.+++.++...+.+|++|||+-+.. ..+|+
T Consensus 818 GGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~-e~~~~ 891 (908)
T COG0419 818 GGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELK-ERADV 891 (908)
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH-HhCCe
Confidence 7888776666554 456 799999999999999999999999999988899999999986644 44444
No 440
>PRK13695 putative NTPase; Provisional
Probab=98.60 E-value=3.9e-07 Score=66.33 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEP--TVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEP--t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
+++-+..+++..+.+|+++++||| +.++|+. +.+.+.+..+.|.++|+++|+ ..+...+|++.
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~-~~~~~~~~~i~---------- 146 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHR-RSVHPFVQEIK---------- 146 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECc-hhhHHHHHHHh----------
Confidence 456677777777889999999994 4455544 455555555568999999998 56778888855
Q ss_pred EEeeCceEEee
Q psy6322 80 GLMREGVLLAE 90 (128)
Q Consensus 80 ~vl~~G~i~~~ 90 (128)
.+.+|+|..-
T Consensus 147 -~~~~~~i~~~ 156 (174)
T PRK13695 147 -SRPGGRVYEL 156 (174)
T ss_pred -ccCCcEEEEE
Confidence 7999998764
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.53 E-value=6.4e-07 Score=70.48 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHh---hhhhhcceEEEeeC
Q psy6322 8 SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYC---EEARQAHIIGLMRE 84 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~---~~~~~~~~v~vl~~ 84 (128)
....+.+++|+++++|||++ ...+..++..+ +.|.++|++||+.+. ...++|-.. ++.+.++|+++|++
T Consensus 186 ~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~~r~i~L~~ 257 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDV-EDLYKRPVFKELIENEAFERYVVLSR 257 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHH-HHHHhChHHHHHHhcCceEEEEEEec
Confidence 34445557999999999974 34455555554 469999999998653 334433110 12344789999999
Q ss_pred ceEEeecChhHHh
Q psy6322 85 GVLLAEESPASLM 97 (128)
Q Consensus 85 G~i~~~~~~~~l~ 97 (128)
|+ ..|++++++
T Consensus 258 ~~--~~g~~~~i~ 268 (270)
T TIGR02858 258 RK--GPGTVEAVY 268 (270)
T ss_pred CC--CCCceeecc
Confidence 87 667666543
No 442
>KOG0063|consensus
Probab=98.50 E-value=2.6e-07 Score=77.18 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=64.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||+.||.+||.+.+++.++.++|||.+-||...+..-...|+.+.....=||++.||++...-+.|-+-
T Consensus 216 ggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiC 284 (592)
T KOG0063|consen 216 GGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFIC 284 (592)
T ss_pred cchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhccee
Confidence 799999999999999999999999999999999999999999998888999999999998887777643
No 443
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.42 E-value=1.1e-06 Score=78.58 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=53.6
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH--HHhHH
Q psy6322 9 LAVALLHNPDLLILDEPTVGL-DPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL--LCAKL 68 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gL-D~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~--~~d~v 68 (128)
|.+++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++++.. +++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~i 742 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVI 742 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHH
Confidence 577889999999999999999 7999999999999998889999999999999976 45553
No 444
>KOG0063|consensus
Probab=98.41 E-value=3.8e-07 Score=76.23 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=61.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||++||+++|..+-..+++++.|||.+-||...+......++++. ..++|-+++.||+-.+--++||
T Consensus 459 ggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladr 526 (592)
T KOG0063|consen 459 GGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADR 526 (592)
T ss_pred chhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcce
Confidence 799999999999999999999999999999999999999999875 5689999999999877667766
No 445
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.41 E-value=6.8e-07 Score=74.58 Aligned_cols=76 Identities=28% Similarity=0.412 Sum_probs=67.6
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHH-HhHHHhhhhhhcceE
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLL-CAKLYCEEARQAHII 79 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~-~d~v~~~~~~~~~~v 79 (128)
|||.|+.||.+++..|.+++.||-.+-||+.+...+...|.+++.+ |.|++++||..+...++ -|+ +
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~-----------l 579 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT-----------L 579 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce-----------e
Confidence 8999999999999999999999999999999999999999999754 99999999999988777 444 6
Q ss_pred EEeeCceEE
Q psy6322 80 GLMREGVLL 88 (128)
Q Consensus 80 ~vl~~G~i~ 88 (128)
+.+.-|...
T Consensus 580 i~vgYg~v~ 588 (593)
T COG2401 580 ILVGYGKVP 588 (593)
T ss_pred EEeeccccc
Confidence 667666654
No 446
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.40 E-value=1.5e-06 Score=66.49 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHC-CcEEEEEeCCHHHHH
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSI-WDRLVEMTEN-GKTVMITTHYIEEAR 62 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i-~~~l~~~~~~-g~tvi~~sH~l~~~~ 62 (128)
+.++++-..--+.+|+++|||||.+|.|+.....+ +.++..+.+. +.++|++||+.+...
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 34555555556779999999999999997776664 6677777765 889999999998664
No 447
>KOG0064|consensus
Probab=98.40 E-value=2.6e-07 Score=78.72 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=53.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
||+|||+++||.+.++|++.+|||-|+++.+.....+++..+. -|.+.+-+||.+...
T Consensus 615 gGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 615 GGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLW 672 (728)
T ss_pred chHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHH
Confidence 8999999999999999999999999999999999998887654 489999999998754
No 448
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.16 E-value=1.4e-05 Score=60.75 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=54.6
Q ss_pred hHhHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhc
Q psy6322 2 GQQRRTSLAVALLH--NPDLLILDEPTVG---LDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQA 76 (128)
Q Consensus 2 G~~qrv~ia~al~~--~p~lllLDEPt~g---LD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~ 76 (128)
++.+.+.....++. +|+++++||||+. .|......+...+..+++.|.|+++++|........++++. .-+
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~----~l~ 179 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIR----SIC 179 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHH----hhe
Confidence 45677787877776 9999999999964 44544455555566666779999999998776555555522 124
Q ss_pred ceEEEeeC
Q psy6322 77 HIIGLMRE 84 (128)
Q Consensus 77 ~~v~vl~~ 84 (128)
|.++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 55656653
No 449
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.15 E-value=5e-06 Score=55.07 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=25.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVE 43 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~ 43 (128)
.|++++|||||++||+.....+.+++++
T Consensus 63 ~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 63 SPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3899999999999999999999998864
No 450
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.05 E-value=2.7e-06 Score=66.21 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEe
Q psy6322 4 QRRTSLAVALLHNPDLLILDEPTVGLDPVLSKS-IWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLM 82 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~-i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl 82 (128)
+|++++||++..++++.+| ||+.+|+..... +. +.+++..+.|.|+.||.+... ...+.|.+|
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~------------~~~paI~vl 206 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAER------------RIFPAIDIL 206 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhC------------CCCCeEEEc
Confidence 9999999999999999999 999999655543 54 566665689999999999843 556789999
Q ss_pred eCceEE
Q psy6322 83 REGVLL 88 (128)
Q Consensus 83 ~~G~i~ 88 (128)
+.|++.
T Consensus 207 ~s~sr~ 212 (249)
T cd01128 207 KSGTRK 212 (249)
T ss_pred CCCCcc
Confidence 999983
No 451
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.04 E-value=2.2e-05 Score=69.87 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=57.8
Q ss_pred HHHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH--HHhHHHhhhhhhcceEEEeeCce
Q psy6322 11 VALLHNPDLLILDEPTVGLD-PVLSKSIWDRLVEMTENGKTVMITTHYIEEARL--LCAKLYCEEARQAHIIGLMREGV 86 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~--~~d~v~~~~~~~~~~v~vl~~G~ 86 (128)
..+-.+|+++++|||+.+|| +..+..+.+.++..++.|.+++++||+++++.. .++.++ ++++..++|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il----~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAII----ESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHH----HhCCeeEEcCCch
Confidence 44567999999999999999 788999999999998889999999999998863 344433 5566666676643
No 452
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.93 E-value=3.5e-05 Score=64.50 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=52.0
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEeecChh
Q psy6322 24 EP--TVGLDPVLSKSIWDRLVEMTE--NGK-----TVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPA 94 (128)
Q Consensus 24 EP--t~gLD~~~~~~i~~~l~~~~~--~g~-----tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~~~~~~ 94 (128)
|| ++|+||.....+.+++.+... .|. ||++++||+++ .+||+ +.++.+|+++.+++.+
T Consensus 273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~-----------v~~i~dG~Ivls~~la 339 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADT-----------VRGILDGHFVLDRQLA 339 (438)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhh-----------EEEecCEEEEEeccHH
Confidence 65 789999999999999999863 575 99999999994 78887 7799999999999876
Q ss_pred HH
Q psy6322 95 SL 96 (128)
Q Consensus 95 ~l 96 (128)
+-
T Consensus 340 ~~ 341 (438)
T PRK07721 340 NK 341 (438)
T ss_pred HC
Confidence 54
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.91 E-value=4.3e-05 Score=58.49 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=36.9
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 15 HNPDLLILDEPTVGL----DPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 15 ~~p~lllLDEPt~gL----D~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
.+|+++++||||+++ |+..++.+.+.++.+.+.|.|++++ |+...
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 479999999999999 8888888999999887778876664 55553
No 454
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.86 E-value=9.6e-05 Score=65.69 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=56.3
Q ss_pred HHHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH--HHhHHHhhhhhhcceEEEeeC
Q psy6322 11 VALLHNPDLLILDEPTVGLD-PVLSKSIWDRLVEMTENGKTVMITTHYIEEARL--LCAKLYCEEARQAHIIGLMRE 84 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~--~~d~v~~~~~~~~~~v~vl~~ 84 (128)
..+..+|.++++|||..+|| |.....+.+.++..++.|..++++||+++++.. +++-++ +++..-++|-+
T Consensus 637 ~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~----~~~~t~I~lpn 709 (800)
T PRK13898 637 ISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLV----QQTATQIFLPN 709 (800)
T ss_pred HHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHH----HhCCeEEEcCC
Confidence 35678999999999999999 899999999999998889999999999998876 444433 45544445544
No 455
>PF13175 AAA_15: AAA ATPase domain
Probab=97.77 E-value=0.0001 Score=59.22 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=48.8
Q ss_pred ChHhHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHH
Q psy6322 1 GGQQRRTSLAVALL------HN-PD---LLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEE 60 (128)
Q Consensus 1 gG~~qrv~ia~al~------~~-p~---lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~ 60 (128)
.|.++.+.++..+. .+ +. ++++|||=+-|.|..++.+.+.|.++.. .+..||++||.+..
T Consensus 344 ~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 344 SGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred cchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 37777777666542 12 22 9999999999999999999999999975 48999999998763
No 456
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.75 E-value=6.4e-05 Score=57.13 Aligned_cols=46 Identities=26% Similarity=0.484 Sum_probs=42.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.++.-++|||||=++|.|.-+-.+...|..+.+.|.-+||.||.+=
T Consensus 144 f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3567799999999999999999999999999988999999999875
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.74 E-value=3e-05 Score=59.21 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=39.7
Q ss_pred HHhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHH
Q psy6322 12 ALLHNPDLLILDEPTV------GLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59 (128)
Q Consensus 12 al~~~p~lllLDEPt~------gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~ 59 (128)
+...+|+++++| |++ .+|+.....+.+.+.+++++ |.||++++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345799999999 765 47999999999999998754 999999999874
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.63 E-value=0.0002 Score=49.73 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 5 RRTSLAVALLHNPDLLILDEPT----------VGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 5 qrv~ia~al~~~p~lllLDEPt----------~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
++...+++...+|+++++|||+ .+.+......+.++.....+.+.|+++++|.....
T Consensus 74 ~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 74 LSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 4456788888999999999999 45566666777777666655699999999988644
No 459
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.53 E-value=0.00037 Score=64.35 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=58.2
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||+|-.++||..|+ .-.|+.+|||-=++||..++..+..+|.++. .+.=+|+|||... ....+|+++
T Consensus 1069 GGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~-~m~~ad~l~ 1139 (1163)
T COG1196 1069 GGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG-TMEAADRLV 1139 (1163)
T ss_pred CcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH-HHHHHHHHe
Confidence 89999999988665 4589999999999999999999999999986 5678999999866 456777766
No 460
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.51 E-value=4.7e-05 Score=56.06 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=55.3
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH--HHHHHhH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE--ARLLCAK 67 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~--~~~~~d~ 67 (128)
|+.+|..||.++..+|+.+..+| +.+||...+.+.+.+.+....|.+|++.+|.+.+ +...||+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~ 126 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDR 126 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCE
Confidence 77889999999999999988777 8899999999999998876567899999999965 5566665
No 461
>PF13166 AAA_13: AAA domain
Probab=97.45 E-value=0.00083 Score=58.48 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=56.0
Q ss_pred hHhHHHHHHHH--Hhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCcEEEEEeCCHHHHHHHHhH
Q psy6322 2 GQQRRTSLAVA--LLH-------NPDLLILDEPTVGLDPVLSKSIWDRLVEMT--ENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 2 G~~qrv~ia~a--l~~-------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~--~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|+|.-+++|-- .+. +..++++|-|.|+||...+..+.+.|.+.. ...+-||+.||++.+...+...
T Consensus 504 GEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~l~~~ 580 (712)
T PF13166_consen 504 GEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKELKKW 580 (712)
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHHHHHH
Confidence 78888887752 233 678999999999999999999999999986 5578899999999988888765
No 462
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.41 E-value=0.00046 Score=54.92 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCce
Q psy6322 7 TSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGV 86 (128)
Q Consensus 7 v~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~ 86 (128)
-.+..+|-.+|+++++|||.. ...+++++.+.....+++.++|..+ +....+|+. .|..|+
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~-~~~~~~Rl~-----------~l~~~~ 269 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS-PEEAFEQLA-----------LMVKSS 269 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC-HHHHHHHHH-----------HHhhcc
Confidence 356778999999999999996 3456667766533346799999988 666688855 678888
Q ss_pred EEeecChhHHhh
Q psy6322 87 LLAEESPASLMA 98 (128)
Q Consensus 87 i~~~~~~~~l~~ 98 (128)
+...|.+.+.+.
T Consensus 270 ~~~~g~~~~~~~ 281 (308)
T TIGR02788 270 QAGLGLDFAYIV 281 (308)
T ss_pred ccccCCCHHHHH
Confidence 888887777663
No 463
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.41 E-value=0.00065 Score=61.06 Aligned_cols=59 Identities=29% Similarity=0.328 Sum_probs=43.2
Q ss_pred HHHHHHHHh--cCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhH
Q psy6322 6 RTSLAVALL--HNPDLLILDEP---TVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 6 rv~ia~al~--~~p~lllLDEP---t~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~ 67 (128)
+..++.++- .++.++||||| |+.+| +....+.++..+.+. |.+++++||+ .++..++++
T Consensus 674 ~~~~~~il~~at~~sLvllDE~GrGTs~~d--g~aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 674 MTETANILNNATERSLVLLDEIGRGTSTYD--GLSIAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCCCCcch--hHHHHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 344455444 49999999999 77777 444566677777665 5899999999 666677765
No 464
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.25 E-value=0.00088 Score=58.34 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=44.1
Q ss_pred ChHhHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 1 GGQQRRTSLAVALLH------NPDLLILDEPTVGLDPVLSKSIWD-RLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 1 gG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~i~~-~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
||++|-+++|..++. ..|++ +|||++.||+..+..+.+ .+... +.-||+.|||-+.-...
T Consensus 554 ~Ge~~~~~la~~~al~~~~~~~~p~i-iD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e~~~~~ 620 (650)
T TIGR03185 554 AGERQILAIALLWGLAKVSGRRLPVI-IDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEEVDEKH 620 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEE-EcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHhhCHHH
Confidence 699999876664433 46674 699999999999999875 55543 56788888987654433
No 465
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.21 E-value=0.0019 Score=52.50 Aligned_cols=65 Identities=29% Similarity=0.410 Sum_probs=54.8
Q ss_pred hHhHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 2 GQQRRTSLAVALLH--NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 2 G~~qrv~ia~al~~--~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|+.+-++++-+|.. .|++++||||=.+|-|..-..+...+.+..+.+ -||++||....+..+=.|
T Consensus 274 GTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~ 340 (373)
T COG4637 274 GTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEH 340 (373)
T ss_pred cHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhcccc
Confidence 67777888887775 489999999999999999999999999987654 899999999887655444
No 466
>KOG0962|consensus
Probab=97.18 E-value=0.00087 Score=62.02 Aligned_cols=61 Identities=30% Similarity=0.308 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----H-CCcEEEEEeCCHHHHHHHH
Q psy6322 5 RRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT----E-NGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 5 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~----~-~g~tvi~~sH~l~~~~~~~ 65 (128)
=|+++|-.++.++.+|-|||||.+||-.+..-+...+..+. . .+.-.|++|||-.++..+.
T Consensus 1196 IRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~ 1261 (1294)
T KOG0962|consen 1196 IRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLG 1261 (1294)
T ss_pred HHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhh
Confidence 37889999999999999999999999988887766666543 2 2677899999998876554
No 467
>KOG0964|consensus
Probab=97.16 E-value=0.00053 Score=61.85 Aligned_cols=67 Identities=25% Similarity=0.417 Sum_probs=57.8
Q ss_pred ChHhHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLHN----PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~~----p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||||.-||||..++-. +|++||||--++||+..+..+..+|+++... +-+++|-...++.+.+|+.+
T Consensus 1100 GGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~--aQFI~TTFRpEll~vAdKfy 1170 (1200)
T KOG0964|consen 1100 GGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS--AQFITTTFRPELLSVADKFY 1170 (1200)
T ss_pred CchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc--cceEeecccHHHHHHHHhhh
Confidence 8999999999987643 6899999999999999999999999999754 65666666777889999966
No 468
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.001 Score=53.58 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=38.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 20 LILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 20 llLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
+++|||+.+||+.++..+.+.+.+.. .+.++|++||+++.+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHH
Confidence 55789999999999999999999984 578999999999866544
No 469
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0042 Score=53.49 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=54.1
Q ss_pred ChHhHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAV--ALLHN--PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~--al~~~--p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
||+..|+++|. +++.. .+.|||||--+|+--.....|-+.|+++. +..-|+.|||-+ .|+..+|.
T Consensus 434 GGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls-~~~QVl~VTHlP-QVAa~ad~ 502 (557)
T COG0497 434 GGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLS-EHHQVLCVTHLP-QVAAMADT 502 (557)
T ss_pred hhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHh-cCceEEEEecHH-HHHhhhcc
Confidence 79999999987 44444 66999999999999999999999999985 568899999955 46666665
No 470
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0063 Score=45.35 Aligned_cols=56 Identities=27% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 8 SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
++.++|..+|+++++|||. |+... ...+ +....|..++.++|..+.. ...+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~---~~~l-~~a~~G~~v~~t~Ha~~~~-~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETI---RLAL-TAAETGHLVMSTLHTNSAA-KTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHH---HHHH-HHHHcCCEEEEEecCCcHH-HHHhHHHhh
Confidence 5778999999999999996 55543 2223 3345689999999998755 567887643
No 471
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.0048 Score=51.58 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=51.5
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHHCCcEEEEEe-CCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEeecC
Q psy6322 15 HNPDLLILDEPTVGLDPV-LSKSIWDRLVEMTENGKTVMITT-HYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEES 92 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~-~~~~i~~~l~~~~~~g~tvi~~s-H~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~~~~ 92 (128)
.+|++|++|||...++.. .+..++..+.++.+.|+.+|++| |.+.++..+.+|+. . =+..|.++.-..
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~-------S---R~~~gl~v~i~~ 262 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV-------S---RFQMGLVAKLEP 262 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh-------h---HHhcCceEeeCC
Confidence 379999999999988754 45679999999887777777766 88888888877743 1 135565655554
Q ss_pred hh
Q psy6322 93 PA 94 (128)
Q Consensus 93 ~~ 94 (128)
|+
T Consensus 263 pd 264 (440)
T PRK14088 263 PD 264 (440)
T ss_pred CC
Confidence 44
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.61 E-value=0.00053 Score=57.81 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=32.2
Q ss_pred CCCEEEEe--CC-CCCCC--HHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 16 NPDLLILD--EP-TVGLD--PVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 16 ~p~lllLD--EP-t~gLD--~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+|+.+++| -+ ....| +..++.+++++..+++.|.|+|+++|+++.
T Consensus 120 ~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 120 KAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred CCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 45666666 22 22223 467788999999888889999999999864
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.42 E-value=0.0034 Score=52.62 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=56.5
Q ss_pred hHhHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhh
Q psy6322 2 GQQRRTSLAVALL-------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEAR 74 (128)
Q Consensus 2 G~~qrv~ia~al~-------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~ 74 (128)
|+|+|++.+.+.. .++-++++|+||+..|+. +.+...+.+.-..|.+..+.||. .++++|
T Consensus 225 ~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l----~~L~ER------- 291 (432)
T PRK06793 225 LMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM----KKLLER------- 291 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc----hhHHHH-------
Confidence 7889999888877 799999999999999996 66666666665458888888884 445555
Q ss_pred hcceEEEeeCceEEeecCh
Q psy6322 75 QAHIIGLMREGVLLAEESP 93 (128)
Q Consensus 75 ~~~~v~vl~~G~i~~~~~~ 93 (128)
.....+|.|.+.++.
T Consensus 292 ----ag~~~~GSiT~~~tv 306 (432)
T PRK06793 292 ----SGKTQKGSITGIYTV 306 (432)
T ss_pred ----hccCCCcceEEEEEE
Confidence 223567888766543
No 474
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.25 E-value=0.034 Score=42.82 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHH-CCcEEEEEeCCHHHH
Q psy6322 5 RRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTE-NGKTVMITTHYIEEA 61 (128)
Q Consensus 5 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~-~~~-~g~tvi~~sH~l~~~ 61 (128)
++++-..-.+.+..++|+||+..|=++.....+...+-+ +.+ .+..+|++||+.+..
T Consensus 111 ~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 111 KRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA 169 (235)
T ss_dssp HHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred HHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence 344433334567889999999999998888775555554 556 488899999998743
No 475
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=95.42 E-value=0.071 Score=48.19 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCcEEEEEeCCHHHHHHHHh
Q psy6322 7 TSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRL-VEMTE-NGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 7 v~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l-~~~~~-~g~tvi~~sH~l~~~~~~~d 66 (128)
++-..--+.++.++|+||+..|-|+..-..+...+ ..+.+ .|..++++||..+. ..+++
T Consensus 662 ~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL-~~l~~ 722 (840)
T TIGR01070 662 AANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFEL-TALEE 722 (840)
T ss_pred HHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHH-HHHhh
Confidence 33333446789999999998888877777755544 44455 57889999998764 34443
No 476
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.068 Score=43.99 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=53.2
Q ss_pred hHhHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhh
Q psy6322 2 GQQRRTSLAVALL---------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEE 72 (128)
Q Consensus 2 G~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~ 72 (128)
||++-++++.-|+ .++|||||||-++-||+.-+..+.+. .+ .+.-+++++-+.+.+...-.+
T Consensus 279 Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~~~~~~~~~~~----- 349 (363)
T COG1195 279 GQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTDLEDIDDNLDE----- 349 (363)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccCHHHhhhhhhc-----
Confidence 7888777776554 57899999999999999999999887 32 345566666667766533321
Q ss_pred hhhcceEEEeeCceE
Q psy6322 73 ARQAHIIGLMREGVL 87 (128)
Q Consensus 73 ~~~~~~v~vl~~G~i 87 (128)
.-.++.+.+|+|
T Consensus 350 ---~~~~f~V~~g~i 361 (363)
T COG1195 350 ---NAQMFHVEDGKI 361 (363)
T ss_pred ---cceEEEEeccee
Confidence 124667778776
No 477
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.15 E-value=0.028 Score=42.23 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.6
Q ss_pred cCCCEEEEeCC-----CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEP-----TVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEP-----t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
.+++.+++|=. +.+.|...+..+.+++..+++.|.|+++++|.
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~ 153 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEA 153 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 36899999932 23445666778889999888889999999996
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.03 E-value=0.11 Score=42.04 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 8 SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
++..+|-++|+++++||+. |+.+.....+ ....|.+++.+.|-.+-. ...+|++
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~~-~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSAA-QTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCHH-HHHHHHH
Confidence 4778899999999999997 7777654333 245699999999986544 4556654
No 479
>KOG0933|consensus
Probab=95.00 E-value=0.027 Score=51.36 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=46.6
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
||||..|+++..|+ .-+|++||||--++||..+.+.|-.+|+..-. +.-+|+||=.-
T Consensus 1085 GGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~-~sQFIVVSLKe 1145 (1174)
T KOG0933|consen 1085 GGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFT-HSQFIVVSLKE 1145 (1174)
T ss_pred CchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCC-CCeEEEEEchh
Confidence 89999999887554 45799999999999999999999999987543 45677776543
No 480
>PRK06893 DNA replication initiation factor; Validated
Probab=94.85 E-value=0.069 Score=40.60 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=34.6
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 14 LHNPDLLILDEPTVGL-DPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt~gL-D~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
+.++++|++||+.... +......+++++.+..+.|++++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4578999999998754 66667789999999877777776655543
No 481
>PRK08181 transposase; Validated
Probab=94.74 E-value=0.16 Score=40.01 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=35.5
Q ss_pred hcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC-CHHHHH
Q psy6322 14 LHNPDLLILDEP-TVGLDPVLSKSIWDRLVEMTENGKTVMITTH-YIEEAR 62 (128)
Q Consensus 14 ~~~p~lllLDEP-t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH-~l~~~~ 62 (128)
+.++++|++||. ....+......+++++....++ +++|++|. .+++..
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPFGEWN 214 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHH
Confidence 578999999999 5567888889999999986555 45555554 344443
No 482
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.74 E-value=0.26 Score=32.20 Aligned_cols=55 Identities=36% Similarity=0.340 Sum_probs=40.0
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHCCcEEEEEeCC
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWD------RLVEMTENGKTVMITTHY 57 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~------~l~~~~~~g~tvi~~sH~ 57 (128)
+..+..+.++-...|+++++||+..-.+......... ........+..+|.++|.
T Consensus 65 ~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 65 LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 3455666777777789999999999999888776654 223333457888888884
No 483
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=94.43 E-value=0.22 Score=43.91 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=52.9
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH--HHhHHHhhhhhhcceEEEeeCc
Q psy6322 13 LLHNPDLLILDEPTVGLD-PVLSKSIWDRLVEMTENGKTVMITTHYIEEARL--LCAKLYCEEARQAHIIGLMREG 85 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~--~~d~v~~~~~~~~~~v~vl~~G 85 (128)
+-..|.++++||+-.-++ +.....+.+.+++.++.|..++++||+++++.. .+..+ .+++...++|.+.
T Consensus 626 ~~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~~~~~~~~~i----l~n~~~ki~l~~~ 697 (785)
T TIGR00929 626 LDGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDALGSRIADSI----LEQCATKIFLPNP 697 (785)
T ss_pred cCCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHH----HHhCCEEEEcCCC
Confidence 456799999999877775 888888999999999889999999999998753 33332 2456666667654
No 484
>PF13514 AAA_27: AAA domain
Probab=94.39 E-value=0.16 Score=47.03 Aligned_cols=56 Identities=25% Similarity=0.282 Sum_probs=46.5
Q ss_pred HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHH
Q psy6322 6 RTSLAVAL-LHNPDL-LILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEAR 62 (128)
Q Consensus 6 rv~ia~al-~~~p~l-llLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~ 62 (128)
|++++..+ ..++++ +|+|+||...|..-...++++|.++.+ ..=||+-||+.+.+.
T Consensus 1039 RLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~-~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1039 RLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSR-RRQVIYFTCHEHLVE 1096 (1111)
T ss_pred HHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhcc-CCeEEEEeccHHHHH
Confidence 67777777 556677 999999999999999999999999865 467888888877554
No 485
>PRK13764 ATPase; Provisional
Probab=94.23 E-value=0.21 Score=43.69 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=43.7
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC---------------CHHHHHHHHhHHHhhhhhhc
Q psy6322 12 ALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH---------------YIEEARLLCAKLYCEEARQA 76 (128)
Q Consensus 12 al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH---------------~l~~~~~~~d~v~~~~~~~~ 76 (128)
+|..+||++++||.=..-+ ++++..+...|..++-+-| ++..+..+ +
T Consensus 320 lLR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~i-----------I 381 (602)
T PRK13764 320 LLLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQI-----------V 381 (602)
T ss_pred HHhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHh-----------h
Confidence 4889999999999975332 4444445445777888889 44444444 4
Q ss_pred ceEEEeeCceE--EeecC
Q psy6322 77 HIIGLMREGVL--LAEES 92 (128)
Q Consensus 77 ~~v~vl~~G~i--~~~~~ 92 (128)
|+++.+++|+| +++.+
T Consensus 382 D~IV~I~~G~I~~v~~~~ 399 (602)
T PRK13764 382 DTVIFIEDGEVSKVYDLE 399 (602)
T ss_pred cEEEEEeCCEEEEEEeee
Confidence 56889999999 55554
No 486
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.67 E-value=0.53 Score=39.60 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 10 AVALLHNPDLLILDEP-TVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 10 a~al~~~p~lllLDEP-t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.+.-..++++|++||. +-+.+......++.++..+...|+.+|++|+...
T Consensus 200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 3444678999999999 4566788899999999999888888899888653
No 487
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.47 E-value=0.29 Score=40.62 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=40.6
Q ss_pred HHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHH
Q psy6322 9 LAVALLHNPDLLILDE----------PTVGLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEA 61 (128)
Q Consensus 9 ia~al~~~p~lllLDE----------Pt~gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~ 61 (128)
+..|....|.++++|| +.+|.|...+..+.+++..+. ..+..||++||.++.+
T Consensus 231 f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 231 FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 4456678899999999 456778888888888887763 2367799999988755
No 488
>PRK04296 thymidine kinase; Provisional
Probab=93.39 E-value=0.33 Score=35.87 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=36.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH----------HHHHHHHhHHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI----------EEARLLCAKLY 69 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l----------~~~~~~~d~v~ 69 (128)
.+++++++||- .-++ ...+.++++.++..|.+|+++.++. ..+..++|.|.
T Consensus 77 ~~~dvviIDEa-q~l~---~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 77 EKIDCVLIDEA-QFLD---KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCCEEEEEcc-ccCC---HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 47899999998 1133 3446777777777899999999992 45666677643
No 489
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=93.32 E-value=0.38 Score=40.64 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=54.8
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH-----H----------HHHHHHHHH-HCCcEEEEEeCCHHHHHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSK-----S----------IWDRLVEMT-ENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~-----~----------i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~ 65 (128)
-+-|-..|..|+-..+++||+||=|++--+-.+. . +.+.++.+. +.|.+.|++.=-.......+
T Consensus 326 STSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vA 405 (448)
T PF09818_consen 326 STSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVA 405 (448)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhC
Confidence 3557788999999999999999999986554422 2 244455664 45988888887777766666
Q ss_pred hHHHhhhhhhcceEEEeeCceE
Q psy6322 66 AKLYCEEARQAHIIGLMREGVL 87 (128)
Q Consensus 66 d~v~~~~~~~~~~v~vl~~G~i 87 (128)
|+ |++|++-+-
T Consensus 406 D~-----------Vi~Md~Y~~ 416 (448)
T PF09818_consen 406 DR-----------VIMMDEYRP 416 (448)
T ss_pred CE-----------EEEecCccc
Confidence 65 889998543
No 490
>KOG0996|consensus
Probab=93.22 E-value=0.11 Score=48.17 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=55.3
Q ss_pred ChHhHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLHN----PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~~----p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||+|-.-++|..++.. .|+++|||--++||+.++..|...|++..++ .-+|++|= .+.++.+++|.+
T Consensus 1198 GGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkN-AQFIIISL-RnnMFELa~rLv 1268 (1293)
T KOG0996|consen 1198 GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKN-AQFIIISL-RNNMFELANRLV 1268 (1293)
T ss_pred cchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccC-CeEEEEEe-hhhHHHHHhhhe
Confidence 8999999999988764 7999999999999999999999999987653 45566654 356778888865
No 491
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.13 E-value=0.32 Score=32.18 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEeCCHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-----NGKTVMITTHYIE 59 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-----~g~tvi~~sH~l~ 59 (128)
..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 34455667788999999998765 66667778888888642 4788899988765
No 492
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.95 E-value=0.071 Score=45.10 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=36.5
Q ss_pred cCCCEEEEeC---CCCCCCHHH--HHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDE---PTVGLDPVL--SKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDE---Pt~gLD~~~--~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.+|+.+++|= |++++|... +..+.+++..+++.|.|+|+++|...
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCcc
Confidence 5899999994 456777655 67788888888888999999999764
No 493
>PRK06921 hypothetical protein; Provisional
Probab=92.80 E-value=0.71 Score=36.12 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=39.9
Q ss_pred HhcCCCEEEEeCCCC---C---CCHHHHHHHHHHHHHHHHCCcEEEEEeCC-HHHHH----HHHhHHH
Q psy6322 13 LLHNPDLLILDEPTV---G---LDPVLSKSIWDRLVEMTENGKTVMITTHY-IEEAR----LLCAKLY 69 (128)
Q Consensus 13 l~~~p~lllLDEPt~---g---LD~~~~~~i~~~l~~~~~~g~tvi~~sH~-l~~~~----~~~d~v~ 69 (128)
.+.++++|++|+-.. | .+......++.++......++.+|++|+. ++++. ++++|++
T Consensus 174 ~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sRi~ 241 (266)
T PRK06921 174 RMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRIV 241 (266)
T ss_pred HhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHHHH
Confidence 357899999999733 4 44556678999998877666777777765 45554 5666643
No 494
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.61 E-value=0.29 Score=42.70 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=45.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 17 PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 17 p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
-+++++|.|.++.|.......+.++++.+.+++-||+-||+--++..+.+-
T Consensus 556 ~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~rd~~~~ 606 (758)
T COG4694 556 NKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYRDITLE 606 (758)
T ss_pred CeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehHHHHhh
Confidence 457899999999999999999999999998999999999998776666553
No 495
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.20 E-value=0.35 Score=35.31 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=42.7
Q ss_pred HHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhH
Q psy6322 8 SLAVALL--HNPDLLILDEPTVG--LDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAK 67 (128)
Q Consensus 8 ~ia~al~--~~p~lllLDEPt~g--LD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~ 67 (128)
..|+..+ .+.++++|||-... ++......+.+++.+. .++..+|++.++.. ++...||-
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r-p~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK-PEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC-CCCCEEEEECCCCCHHHHHhCce
Confidence 3344444 56899999999775 4577788899988763 45789999999974 45555554
No 496
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.17 E-value=0.17 Score=42.58 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=51.0
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHCCc-------EEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEeecCh
Q psy6322 23 DEP--TVGLDPVLSKSIWDRLVEMTENGK-------TVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESP 93 (128)
Q Consensus 23 DEP--t~gLD~~~~~~i~~~l~~~~~~g~-------tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~~~~~ 93 (128)
.|| +.|.||.....+.+++.+....+. ||++.+||+. +.++|+ +..+.+|.|+.+.+.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~-----------~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADS-----------VRGILDGHIVLSRAL 343 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhh-----------hccccceEEEEecch
Confidence 354 559999999999999999876677 8999999984 667877 668999999999887
Q ss_pred hHHh
Q psy6322 94 ASLM 97 (128)
Q Consensus 94 ~~l~ 97 (128)
++..
T Consensus 344 a~~~ 347 (440)
T TIGR01026 344 AQRG 347 (440)
T ss_pred hhCC
Confidence 6653
No 497
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=0.49 Score=38.36 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=45.1
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 10 AVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 10 a~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
++....+--++|..+|-+-|-|..+..+.+++.++.+.|.-|++.||.=..+..+
T Consensus 254 ~lli~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhiiNgl 308 (374)
T COG4938 254 MLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIINGL 308 (374)
T ss_pred HeeeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHHhhhh
Confidence 3333344457788999999999999999999999999999999999976655544
No 498
>PRK06526 transposase; Provisional
Probab=91.77 E-value=1.1 Score=34.99 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=33.4
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 14 LHNPDLLILDEPT-VGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt-~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
+.++++||+||.- ...++.....+++++....+++ ++|++|+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 4679999999994 4678888889999998765544 566666653
No 499
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=91.71 E-value=0.65 Score=39.43 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=56.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH----------HHHHHHHHH---HHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSK----------SIWDRLVEM---TENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~----------~i~~~l~~~---~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|-|.+-..|=+++=...+.+++||-+++.-...+. .+-.+..+. ...+.++|.++--++...+.+||
T Consensus 323 GStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDR 402 (554)
T COG3044 323 GSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADR 402 (554)
T ss_pred chhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcce
Confidence 44667778889999999999999999887644333 222333333 33358999999989888777776
Q ss_pred HHhhhhhhcceEEEeeCceEE
Q psy6322 68 LYCEEARQAHIIGLMREGVLL 88 (128)
Q Consensus 68 v~~~~~~~~~~v~vl~~G~i~ 88 (128)
+++|++.+-.
T Consensus 403 -----------aIvMeDhrpk 412 (554)
T COG3044 403 -----------AIVMEDHRPK 412 (554)
T ss_pred -----------EEEecccCcc
Confidence 7799998765
No 500
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.32 E-value=0.73 Score=38.81 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=40.1
Q ss_pred HHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHHHH
Q psy6322 9 LAVALLHNPDLLILDEP----------TVGLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEARL 63 (128)
Q Consensus 9 ia~al~~~p~lllLDEP----------t~gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~~~ 63 (128)
+..|....|.++++||- .+|-+...++.+.+++.++. ..+..||++||.++.+..
T Consensus 269 F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 269 FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 33455678999999992 45667777777778777763 337889999999887643
Done!