Query psy6322
Match_columns 128
No_of_seqs 117 out of 1091
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:31:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b0u_A Histidine permease; ABC 100.0 4.8E-28 1.6E-32 186.8 12.3 89 1-100 156-244 (262)
2 1vpl_A ABC transporter, ATP-bi 99.9 9.3E-28 3.2E-32 185.0 11.4 100 1-111 149-248 (256)
3 2olj_A Amino acid ABC transpor 99.9 1.5E-27 5.2E-32 184.5 12.6 89 1-100 162-250 (263)
4 3tui_C Methionine import ATP-b 99.9 9.3E-28 3.2E-32 193.7 11.8 90 1-101 166-256 (366)
5 3gfo_A Cobalt import ATP-bindi 99.9 4.2E-28 1.4E-32 188.8 8.1 88 1-99 146-234 (275)
6 1ji0_A ABC transporter; ATP bi 99.9 2.5E-27 8.7E-32 180.4 11.6 87 1-98 142-228 (240)
7 4g1u_C Hemin import ATP-bindin 99.9 1.1E-27 3.8E-32 185.4 9.4 88 1-99 144-238 (266)
8 2onk_A Molybdate/tungstate ABC 99.9 2.2E-27 7.5E-32 181.3 10.1 89 1-100 129-218 (240)
9 3fvq_A Fe(3+) IONS import ATP- 99.9 6.8E-27 2.3E-31 188.3 11.9 90 1-101 141-231 (359)
10 1g6h_A High-affinity branched- 99.9 2.2E-27 7.6E-32 182.3 8.4 84 1-95 156-239 (257)
11 3tif_A Uncharacterized ABC tra 99.9 3.7E-27 1.3E-31 179.2 8.6 85 1-97 148-233 (235)
12 3rlf_A Maltose/maltodextrin im 99.9 1E-26 3.5E-31 188.5 11.7 90 1-101 136-226 (381)
13 1z47_A CYSA, putative ABC-tran 99.9 2E-26 6.7E-31 185.3 11.4 89 1-100 148-237 (355)
14 1oxx_K GLCV, glucose, ABC tran 99.9 1.8E-26 6.2E-31 185.2 11.1 89 1-100 143-232 (353)
15 2nq2_C Hypothetical ABC transp 99.9 2.2E-26 7.4E-31 176.9 10.9 86 1-98 131-217 (253)
16 3d31_A Sulfate/molybdate ABC t 99.9 2.2E-26 7.5E-31 184.5 11.3 90 1-101 130-220 (348)
17 2yyz_A Sugar ABC transporter, 99.9 2.4E-26 8.1E-31 185.0 11.4 89 1-100 136-225 (359)
18 2yz2_A Putative ABC transporte 99.9 9.3E-27 3.2E-31 179.8 8.7 89 1-100 141-229 (266)
19 1g29_1 MALK, maltose transport 99.9 3E-26 1E-30 185.1 11.4 89 1-100 142-231 (372)
20 2it1_A 362AA long hypothetical 99.9 2.1E-26 7.1E-31 185.5 10.3 89 1-100 136-225 (362)
21 1v43_A Sugar-binding transport 99.9 3.9E-26 1.3E-30 184.5 11.6 89 1-100 144-233 (372)
22 2pcj_A ABC transporter, lipopr 99.9 2.3E-26 7.9E-31 173.5 9.3 80 1-92 143-222 (224)
23 2ihy_A ABC transporter, ATP-bi 99.9 9.6E-27 3.3E-31 181.3 6.6 87 1-98 164-252 (279)
24 2zu0_C Probable ATP-dependent 99.9 1.5E-26 5E-31 178.9 7.4 86 1-97 167-253 (267)
25 2qi9_C Vitamin B12 import ATP- 99.9 3.9E-26 1.3E-30 175.3 9.6 87 1-98 129-222 (249)
26 2ff7_A Alpha-hemolysin translo 99.9 7.1E-26 2.4E-30 173.3 10.8 86 1-99 148-233 (247)
27 2d2e_A SUFC protein; ABC-ATPas 99.9 2.5E-26 8.5E-31 175.9 7.4 83 1-94 146-229 (250)
28 3nh6_A ATP-binding cassette SU 99.9 1.4E-25 4.8E-30 177.1 11.8 86 1-99 193-278 (306)
29 2ixe_A Antigen peptide transpo 99.9 7.9E-26 2.7E-30 175.2 9.7 87 1-99 159-246 (271)
30 1mv5_A LMRA, multidrug resista 99.9 7.5E-26 2.6E-30 172.4 7.0 86 1-99 142-227 (243)
31 2ghi_A Transport protein; mult 99.9 1.5E-25 5.1E-30 172.7 8.7 86 1-99 158-243 (260)
32 2pze_A Cystic fibrosis transme 99.9 4.9E-25 1.7E-29 166.8 8.8 86 1-99 133-219 (229)
33 2pjz_A Hypothetical protein ST 99.9 3.4E-25 1.2E-29 171.4 7.9 85 1-99 131-216 (263)
34 2cbz_A Multidrug resistance-as 99.9 6.6E-25 2.2E-29 166.9 7.9 86 1-99 130-218 (237)
35 3qf4_B Uncharacterized ABC tra 99.9 1.1E-23 3.9E-28 177.9 12.1 86 1-99 494-579 (598)
36 3qf4_A ABC transporter, ATP-bi 99.9 7.9E-24 2.7E-28 178.6 11.1 86 1-99 482-567 (587)
37 3b5x_A Lipid A export ATP-bind 99.9 1.2E-23 4E-28 177.1 11.8 86 1-99 483-568 (582)
38 4a82_A Cystic fibrosis transme 99.9 7.1E-24 2.4E-28 178.4 10.1 86 1-99 480-565 (578)
39 3b60_A Lipid A export ATP-bind 99.9 2E-23 6.8E-28 175.7 12.6 86 1-99 483-568 (582)
40 2bbs_A Cystic fibrosis transme 99.9 5.1E-24 1.7E-28 166.8 7.9 85 1-98 162-247 (290)
41 3j16_B RLI1P; ribosome recycli 99.9 5.1E-24 1.7E-28 181.1 7.9 88 1-99 470-560 (608)
42 2yl4_A ATP-binding cassette SU 99.9 1.2E-23 4.2E-28 177.4 9.6 86 1-99 486-571 (595)
43 3gd7_A Fusion complex of cysti 99.9 4.5E-24 1.6E-28 173.3 6.1 88 1-101 158-245 (390)
44 3ux8_A Excinuclease ABC, A sub 99.9 3.7E-23 1.3E-27 176.4 11.7 87 1-99 546-641 (670)
45 3ux8_A Excinuclease ABC, A sub 99.9 3.7E-23 1.3E-27 176.4 11.0 88 1-100 205-300 (670)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 3.5E-23 1.2E-27 173.5 8.8 87 1-98 404-493 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 1.1E-22 3.8E-27 172.7 9.5 87 1-98 474-563 (607)
48 3ozx_A RNAse L inhibitor; ATP 99.9 1E-22 3.5E-27 170.9 8.8 85 1-96 388-475 (538)
49 1sgw_A Putative ABC transporte 99.9 9E-24 3.1E-28 159.0 1.6 69 1-69 136-204 (214)
50 3pih_A Uvrabc system protein A 99.9 2.4E-22 8.2E-27 177.1 10.8 88 1-100 808-904 (916)
51 4f4c_A Multidrug resistance pr 99.9 2.7E-22 9.2E-27 181.9 8.1 87 1-100 1220-1306(1321)
52 3g5u_A MCG1178, multidrug resi 99.9 3.5E-22 1.2E-26 180.7 8.7 87 1-100 1174-1260(1284)
53 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.6E-22 1.9E-26 159.0 8.7 77 1-89 282-364 (365)
54 1yqt_A RNAse L inhibitor; ATP- 99.9 5.9E-22 2E-26 166.0 9.1 74 1-85 161-234 (538)
55 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.3E-21 4.6E-26 139.8 8.3 75 1-87 60-142 (148)
56 3bk7_A ABC transporter ATP-bin 99.9 1.5E-21 5E-26 165.9 9.7 74 1-85 231-304 (607)
57 4f4c_A Multidrug resistance pr 99.8 3.4E-21 1.2E-25 174.7 11.9 87 1-100 557-643 (1321)
58 2iw3_A Elongation factor 3A; a 99.8 3.7E-21 1.3E-25 170.4 11.2 84 1-98 551-635 (986)
59 2vf7_A UVRA2, excinuclease ABC 99.8 1.8E-21 6.3E-26 170.3 8.7 88 1-100 733-829 (842)
60 3pih_A Uvrabc system protein A 99.8 3.8E-21 1.3E-25 169.5 10.3 88 1-100 467-562 (916)
61 3ozx_A RNAse L inhibitor; ATP 99.8 2.1E-21 7.3E-26 162.9 8.4 74 1-86 141-214 (538)
62 3j16_B RLI1P; ribosome recycli 99.8 2.7E-21 9.2E-26 164.4 8.9 77 1-88 224-300 (608)
63 3g5u_A MCG1178, multidrug resi 99.8 2E-21 6.7E-26 175.8 8.3 86 1-99 529-614 (1284)
64 2r6f_A Excinuclease ABC subuni 99.8 5.5E-21 1.9E-25 168.8 10.9 88 1-100 848-944 (972)
65 2ygr_A Uvrabc system protein A 99.8 9.6E-21 3.3E-25 167.7 11.2 88 1-100 866-962 (993)
66 2ygr_A Uvrabc system protein A 99.8 4.1E-20 1.4E-24 163.7 9.7 87 1-99 524-618 (993)
67 2iw3_A Elongation factor 3A; a 99.8 7.9E-21 2.7E-25 168.3 5.0 78 1-92 904-981 (986)
68 2r6f_A Excinuclease ABC subuni 99.8 3.1E-20 1E-24 164.1 8.2 87 1-99 507-601 (972)
69 4aby_A DNA repair protein RECN 99.8 7.1E-20 2.4E-24 146.7 9.3 78 1-91 298-381 (415)
70 2vf7_A UVRA2, excinuclease ABC 99.8 1.1E-19 3.7E-24 159.2 8.3 87 1-99 382-476 (842)
71 4ad8_A DNA repair protein RECN 99.8 1.6E-18 5.4E-23 143.9 8.8 72 1-85 400-473 (517)
72 3qkt_A DNA double-strand break 99.7 2.4E-18 8.3E-23 136.0 7.5 68 1-69 251-324 (339)
73 4gp7_A Metallophosphoesterase; 99.7 2.9E-19 1E-23 128.7 -0.1 64 1-64 86-165 (171)
74 1e69_A Chromosome segregation 99.7 4.9E-18 1.7E-22 133.3 6.9 84 1-95 222-310 (322)
75 3kta_B Chromosome segregation 99.7 1.8E-17 6.2E-22 121.1 7.4 67 1-69 67-137 (173)
76 2o5v_A DNA replication and rep 99.7 8.3E-18 2.8E-22 135.1 5.8 78 1-96 268-354 (359)
77 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.5E-17 5.3E-22 137.2 2.2 86 1-97 238-337 (460)
78 1ye8_A Protein THEP1, hypothet 99.6 3.4E-16 1.2E-20 114.2 6.7 64 1-67 79-152 (178)
79 3b85_A Phosphate starvation-in 99.6 4.6E-17 1.6E-21 121.7 -2.2 56 2-63 108-163 (208)
80 3auy_A DNA double-strand break 99.6 2E-15 6.9E-20 120.6 6.9 65 1-67 283-354 (371)
81 1w1w_A Structural maintenance 99.6 3.4E-15 1.2E-19 121.1 7.8 68 1-69 336-407 (430)
82 1tf7_A KAIC; homohexamer, hexa 99.4 2.9E-14 9.9E-19 118.5 1.3 74 1-86 356-444 (525)
83 3thx_A DNA mismatch repair pro 99.4 5E-13 1.7E-17 118.2 6.1 83 2-96 725-811 (934)
84 1tq4_A IIGP1, interferon-induc 99.4 4.8E-14 1.7E-18 115.1 -0.6 68 2-69 160-248 (413)
85 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.8E-12 6E-17 102.6 4.1 61 1-69 225-285 (330)
86 2o8b_B DNA mismatch repair pro 99.3 1.1E-11 3.8E-16 110.5 9.2 68 2-69 854-923 (1022)
87 3thx_B DNA mismatch repair pro 99.2 2.8E-11 9.6E-16 107.0 8.2 65 1-67 738-804 (918)
88 1cr0_A DNA primase/helicase; R 99.2 2.7E-11 9.1E-16 93.1 6.1 54 4-58 136-197 (296)
89 1znw_A Guanylate kinase, GMP k 99.2 1.9E-12 6.6E-17 95.0 -1.2 58 12-69 137-199 (207)
90 2ehv_A Hypothetical protein PH 99.2 1.2E-11 3.9E-16 91.6 2.9 49 13-61 132-185 (251)
91 2w0m_A SSO2452; RECA, SSPF, un 99.1 6.7E-11 2.3E-15 86.2 5.7 73 2-85 107-192 (235)
92 1wb9_A DNA mismatch repair pro 99.0 2.7E-10 9.4E-15 99.4 5.1 64 5-69 675-740 (800)
93 2cvh_A DNA repair and recombin 98.9 2.2E-09 7.5E-14 77.9 6.3 57 3-59 91-157 (220)
94 1tf7_A KAIC; homohexamer, hexa 98.9 3E-09 1E-13 88.3 6.3 68 6-84 127-209 (525)
95 4a74_A DNA repair and recombin 98.9 7.3E-10 2.5E-14 80.9 2.4 69 6-85 108-200 (231)
96 2eyu_A Twitching motility prot 98.9 6.7E-09 2.3E-13 79.6 7.8 60 5-72 87-146 (261)
97 2obl_A ESCN; ATPase, hydrolase 98.8 4.3E-10 1.5E-14 89.7 0.7 75 1-98 174-255 (347)
98 3b9q_A Chloroplast SRP recepto 98.8 1.4E-09 4.7E-14 85.1 3.6 76 4-88 207-285 (302)
99 1ewq_A DNA mismatch repair pro 98.8 2.7E-09 9.2E-14 92.8 5.5 57 2-61 639-701 (765)
100 2dpy_A FLII, flagellum-specifi 98.8 8.6E-10 2.9E-14 90.4 0.5 75 1-98 261-344 (438)
101 2og2_A Putative signal recogni 98.7 7.6E-09 2.6E-13 83.0 4.7 75 4-87 264-341 (359)
102 1nlf_A Regulatory protein REPA 98.7 8.1E-09 2.8E-13 78.7 4.3 58 2-62 122-185 (279)
103 1pzn_A RAD51, DNA repair and r 98.7 7.8E-09 2.7E-13 82.1 4.2 64 2-65 210-293 (349)
104 2v9p_A Replication protein E1; 98.7 8.9E-11 3E-15 92.4 -7.0 62 1-96 203-264 (305)
105 3jvv_A Twitching mobility prot 98.7 3.7E-08 1.3E-12 78.7 7.3 56 8-71 188-243 (356)
106 1z6g_A Guanylate kinase; struc 98.7 1.9E-10 6.4E-15 85.5 -6.0 69 1-69 125-205 (218)
107 3ec2_A DNA replication protein 98.7 4.7E-08 1.6E-12 69.5 6.9 49 12-60 96-145 (180)
108 3sop_A Neuronal-specific septi 98.5 2E-08 7E-13 77.2 0.3 51 1-59 101-151 (270)
109 2bdt_A BH3686; alpha-beta prot 98.4 8.9E-10 3E-14 79.0 -7.6 79 2-97 98-183 (189)
110 2i3b_A HCR-ntpase, human cance 98.4 4.2E-08 1.5E-12 71.8 0.4 72 2-90 87-168 (189)
111 3szr_A Interferon-induced GTP- 98.4 3.3E-07 1.1E-11 77.6 5.1 83 14-96 144-235 (608)
112 2kjq_A DNAA-related protein; s 98.3 5E-07 1.7E-11 63.5 4.7 54 13-67 80-138 (149)
113 1n0w_A DNA repair protein RAD5 98.3 9.3E-07 3.2E-11 64.8 5.2 71 15-85 118-209 (243)
114 2qnr_A Septin-2, protein NEDD5 98.1 2.5E-07 8.4E-12 72.0 -0.5 51 1-59 116-168 (301)
115 1pui_A ENGB, probable GTP-bind 98.1 5.9E-07 2E-11 64.5 1.5 50 1-50 152-202 (210)
116 3aez_A Pantothenate kinase; tr 98.0 1.1E-07 3.7E-12 74.6 -4.1 59 1-68 179-239 (312)
117 3asz_A Uridine kinase; cytidin 98.0 5.9E-09 2E-13 75.8 -11.1 57 3-59 98-162 (211)
118 2ewv_A Twitching motility prot 98.0 1E-05 3.6E-10 64.6 6.8 58 6-71 199-256 (372)
119 1lw7_A Transcriptional regulat 97.9 6.3E-06 2.2E-10 65.1 3.1 67 2-69 262-339 (365)
120 1sxj_E Activator 1 40 kDa subu 97.8 2E-05 6.8E-10 61.0 4.9 45 14-60 132-176 (354)
121 1s96_A Guanylate kinase, GMP k 97.7 5.8E-05 2E-09 56.1 6.1 45 10-63 101-145 (219)
122 1rj9_A FTSY, signal recognitio 97.7 1.1E-05 3.7E-10 63.0 2.1 52 3-59 207-259 (304)
123 2qag_C Septin-7; cell cycle, c 97.7 7.4E-06 2.5E-10 66.7 0.7 54 2-60 122-179 (418)
124 2jeo_A Uridine-cytidine kinase 97.6 7.7E-06 2.6E-10 61.0 0.0 56 1-67 119-175 (245)
125 3lda_A DNA repair protein RAD5 97.5 9.9E-05 3.4E-09 59.7 5.5 69 15-86 272-364 (400)
126 2dr3_A UPF0273 protein PH0284; 97.5 0.00022 7.7E-09 51.9 6.2 46 15-60 127-175 (247)
127 2zr9_A Protein RECA, recombina 97.3 0.00073 2.5E-08 53.5 7.5 84 5-91 126-236 (349)
128 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 9.9E-07 3.4E-11 71.4 -10.0 66 16-93 139-208 (392)
129 2xau_A PRE-mRNA-splicing facto 97.2 0.00023 7.7E-09 61.9 3.7 66 2-67 194-261 (773)
130 1nij_A Hypothetical protein YJ 97.1 2.4E-05 8.1E-10 61.0 -3.2 53 1-65 144-196 (318)
131 2bbw_A Adenylate kinase 4, AK4 97.0 1.3E-05 4.6E-10 59.6 -4.8 36 12-47 159-199 (246)
132 1udx_A The GTP-binding protein 97.0 0.0004 1.4E-08 56.5 3.6 64 1-69 255-320 (416)
133 2px0_A Flagellar biosynthesis 97.0 0.00063 2.1E-08 52.7 4.2 67 11-90 177-247 (296)
134 2r6a_A DNAB helicase, replicat 96.9 0.0012 4.3E-08 53.5 5.8 51 6-56 301-362 (454)
135 2ce7_A Cell division protein F 96.7 0.0022 7.6E-08 52.9 5.8 60 2-61 94-167 (476)
136 1odf_A YGR205W, hypothetical 3 96.5 5.3E-05 1.8E-09 58.6 -4.9 32 1-32 137-168 (290)
137 1ls1_A Signal recognition part 96.3 0.013 4.6E-07 45.0 7.6 52 4-56 168-220 (295)
138 2z4s_A Chromosomal replication 96.0 0.01 3.5E-07 48.0 5.5 44 15-58 193-237 (440)
139 1zp6_A Hypothetical protein AT 95.3 0.0042 1.4E-07 43.6 0.7 47 1-55 112-158 (191)
140 2qag_B Septin-6, protein NEDD5 95.2 0.0085 2.9E-07 48.9 2.5 52 7-58 167-219 (427)
141 2gza_A Type IV secretion syste 94.9 0.035 1.2E-06 43.7 5.1 60 3-70 239-298 (361)
142 2f1r_A Molybdopterin-guanine d 94.8 0.00069 2.4E-08 48.5 -4.6 49 1-49 106-164 (171)
143 1fnn_A CDC6P, cell division co 94.7 0.053 1.8E-06 41.6 5.7 52 15-67 124-178 (389)
144 1vma_A Cell division protein F 94.7 0.025 8.5E-07 43.9 3.8 41 1-44 168-211 (306)
145 2r8r_A Sensor protein; KDPD, P 94.5 0.027 9.2E-07 42.4 3.5 46 11-56 79-125 (228)
146 1oix_A RAS-related protein RAB 94.5 0.025 8.6E-07 39.8 3.1 37 6-44 153-189 (191)
147 2e87_A Hypothetical protein PH 94.4 0.042 1.4E-06 42.9 4.4 57 2-60 235-294 (357)
148 2oap_1 GSPE-2, type II secreti 94.3 3.1E-05 1E-09 64.5 -14.4 43 24-67 415-459 (511)
149 2ius_A DNA translocase FTSK; n 94.3 0.0025 8.5E-08 53.2 -3.0 47 12-59 292-343 (512)
150 1jcn_A Inosine monophosphate d 93.9 0.0007 2.4E-08 56.0 -7.0 70 11-97 28-101 (514)
151 1lw7_A Transcriptional regulat 93.9 0.05 1.7E-06 42.6 4.0 26 1-26 299-329 (365)
152 3euj_A Chromosome partition pr 92.4 0.26 8.8E-06 40.8 6.2 53 1-57 382-451 (483)
153 2f9l_A RAB11B, member RAS onco 92.1 0.1 3.5E-06 36.5 3.1 37 7-45 130-166 (199)
154 3e70_C DPA, signal recognition 91.7 0.17 5.7E-06 39.6 4.2 76 4-88 231-307 (328)
155 4a1f_A DNAB helicase, replicat 90.9 0.24 8.3E-06 39.0 4.3 49 2-55 113-163 (338)
156 1l8q_A Chromosomal replication 90.6 0.71 2.4E-05 34.9 6.6 44 14-57 96-140 (324)
157 3b9p_A CG5977-PA, isoform A; A 90.2 0.54 1.8E-05 34.9 5.6 58 2-59 99-170 (297)
158 2eyu_A Twitching motility prot 89.4 9E-05 3.1E-09 56.4 -16.1 51 5-56 177-238 (261)
159 2w58_A DNAI, primosome compone 89.1 0.2 7E-06 35.1 2.4 49 14-62 113-164 (202)
160 4ag6_A VIRB4 ATPase, type IV s 89.1 0.66 2.2E-05 36.3 5.5 67 15-85 261-335 (392)
161 2qm8_A GTPase/ATPase; G protei 89.0 0.2 6.7E-06 39.1 2.4 41 2-46 214-260 (337)
162 1lvg_A Guanylate kinase, GMP k 88.8 0.019 6.3E-07 41.2 -3.4 35 12-46 120-154 (198)
163 2qby_A CDC6 homolog 1, cell di 86.1 0.14 4.9E-06 38.9 -0.0 52 16-67 128-182 (386)
164 3bos_A Putative DNA replicatio 85.4 0.59 2E-05 32.9 3.0 43 15-57 103-147 (242)
165 2z43_A DNA repair and recombin 85.3 0.65 2.2E-05 35.6 3.4 57 5-61 189-261 (324)
166 1v5w_A DMC1, meiotic recombina 84.5 1.2 4E-05 34.6 4.5 48 15-62 218-278 (343)
167 3c8u_A Fructokinase; YP_612366 84.5 0.0061 2.1E-07 43.9 -8.1 52 2-67 115-168 (208)
168 3bh0_A DNAB-like replicative h 84.4 2.8 9.5E-05 32.0 6.6 50 2-56 137-189 (315)
169 1u94_A RECA protein, recombina 83.5 3.4 0.00012 32.4 6.9 81 5-88 128-235 (356)
170 2ewv_A Twitching motility prot 83.3 0.00044 1.5E-08 55.1 -15.8 55 5-59 288-352 (372)
171 1sxj_D Activator 1 41 kDa subu 83.2 0.85 2.9E-05 34.4 3.2 50 16-67 133-183 (353)
172 3szr_A Interferon-induced GTP- 82.4 0.84 2.9E-05 38.3 3.2 53 3-56 170-223 (608)
173 2qgz_A Helicase loader, putati 80.8 0.75 2.6E-05 35.2 2.1 48 14-61 212-262 (308)
174 3kl4_A SRP54, signal recogniti 80.0 2.6 9E-05 34.2 5.2 59 8-66 171-232 (433)
175 1njg_A DNA polymerase III subu 79.6 1.9 6.4E-05 29.8 3.7 42 16-59 126-167 (250)
176 1g5t_A COB(I)alamin adenosyltr 79.5 1.1 3.7E-05 32.8 2.5 61 6-67 108-173 (196)
177 2b8t_A Thymidine kinase; deoxy 78.6 4.1 0.00014 29.9 5.5 49 16-69 89-147 (223)
178 1jjv_A Dephospho-COA kinase; P 77.3 0.12 4.2E-06 36.5 -3.2 56 2-61 63-118 (206)
179 3k1j_A LON protease, ATP-depen 74.9 0.93 3.2E-05 37.8 1.2 42 2-44 187-228 (604)
180 1xx6_A Thymidine kinase; NESG, 74.1 4 0.00014 29.1 4.3 48 16-68 81-138 (191)
181 3hr8_A Protein RECA; alpha and 72.7 17 0.0006 28.4 8.0 52 6-57 127-197 (356)
182 2dy1_A Elongation factor G; tr 71.3 5.5 0.00019 33.7 5.1 50 12-67 95-144 (665)
183 2orv_A Thymidine kinase; TP4A 71.2 5.1 0.00018 30.0 4.4 50 14-69 88-147 (234)
184 3bt7_A TRNA (uracil-5-)-methyl 69.5 6.9 0.00024 30.3 5.0 42 16-65 295-336 (369)
185 2q6t_A DNAB replication FORK h 68.5 7.5 0.00026 30.9 5.1 51 7-57 299-362 (444)
186 1ega_A Protein (GTP-binding pr 67.9 5.3 0.00018 30.1 3.9 58 8-69 107-170 (301)
187 1xp8_A RECA protein, recombina 67.7 20 0.00068 28.1 7.3 57 5-61 139-214 (366)
188 3cf0_A Transitional endoplasmi 67.7 10 0.00036 28.2 5.5 55 7-61 99-167 (301)
189 2x8a_A Nuclear valosin-contain 67.6 0.12 4.2E-06 39.0 -5.4 40 1-42 140-191 (274)
190 4dgh_A Sulfate permease family 67.3 22 0.00076 22.9 7.8 52 14-66 46-98 (130)
191 1x52_A Pelota homolog, CGI-17; 65.6 11 0.00039 25.1 4.8 47 18-64 57-103 (124)
192 2chg_A Replication factor C sm 65.3 10 0.00035 25.6 4.8 43 15-59 101-143 (226)
193 3co5_A Putative two-component 64.8 16 0.00055 24.0 5.5 40 16-56 75-114 (143)
194 2j9r_A Thymidine kinase; TK1, 63.7 7.5 0.00026 28.5 3.9 49 16-69 101-159 (214)
195 3lnc_A Guanylate kinase, GMP k 63.5 0.44 1.5E-05 34.3 -2.9 56 14-69 146-206 (231)
196 3oiz_A Antisigma-factor antago 62.9 12 0.0004 23.4 4.3 42 15-56 42-84 (99)
197 2yhs_A FTSY, cell division pro 62.7 4 0.00014 33.9 2.5 56 4-66 398-456 (503)
198 3h4m_A Proteasome-activating n 61.9 8 0.00027 28.1 3.8 53 8-60 102-168 (285)
199 3d8b_A Fidgetin-like protein 1 61.5 18 0.00063 27.7 6.0 54 7-60 167-233 (357)
200 4dgf_A Sulfate transporter sul 61.4 31 0.001 22.5 6.9 51 15-66 50-101 (135)
201 3t34_A Dynamin-related protein 61.3 4.9 0.00017 30.9 2.6 56 2-59 158-214 (360)
202 3llm_A ATP-dependent RNA helic 61.1 16 0.00054 26.0 5.2 50 11-60 171-222 (235)
203 3ny7_A YCHM protein, sulfate t 58.7 28 0.00094 22.3 5.7 51 15-67 44-95 (118)
204 1e9r_A Conjugal transfer prote 57.6 15 0.00053 28.7 5.0 62 16-84 279-345 (437)
205 4fcw_A Chaperone protein CLPB; 56.3 7.8 0.00027 28.4 2.9 36 8-44 110-146 (311)
206 2kln_A Probable sulphate-trans 55.8 21 0.00072 23.0 4.8 49 16-65 47-96 (130)
207 1in4_A RUVB, holliday junction 54.1 1 3.5E-05 34.6 -2.4 36 27-67 175-211 (334)
208 3cu5_A Two component transcrip 53.9 39 0.0013 21.3 5.9 40 14-57 47-86 (141)
209 4b3f_X DNA-binding protein smu 53.5 72 0.0025 26.4 8.7 63 3-69 192-254 (646)
210 1zxx_A 6-phosphofructokinase; 52.8 39 0.0013 26.2 6.5 56 6-67 175-233 (319)
211 3llo_A Prestin; STAS domain, c 52.8 45 0.0015 21.7 7.7 50 16-66 63-113 (143)
212 3mca_B Protein DOM34, elongati 52.7 35 0.0012 27.1 6.3 47 18-64 310-356 (390)
213 1jr3_A DNA polymerase III subu 52.4 12 0.00042 28.0 3.5 43 15-59 118-160 (373)
214 2jk1_A HUPR, hydrogenase trans 52.3 38 0.0013 21.1 5.6 40 14-57 42-82 (139)
215 3a10_A Response regulator; pho 52.0 36 0.0012 20.3 6.3 39 14-56 43-81 (116)
216 2i1q_A DNA repair and recombin 50.9 11 0.00038 28.3 3.1 45 15-59 203-260 (322)
217 3f6p_A Transcriptional regulat 50.8 40 0.0014 20.5 5.4 19 13-31 43-61 (120)
218 2qtf_A Protein HFLX, GTP-bindi 50.6 6.1 0.00021 30.9 1.6 40 2-45 308-352 (364)
219 1pfk_A Phosphofructokinase; tr 50.5 44 0.0015 25.9 6.5 56 6-67 176-234 (320)
220 2vo9_A EAD500, L-alanyl-D-glut 49.6 22 0.00074 25.2 4.3 34 26-59 30-63 (179)
221 3f6c_A Positive transcription 49.2 43 0.0015 20.5 6.1 41 14-58 44-84 (134)
222 2dpm_A M.dpnii 1, protein (ade 48.7 55 0.0019 24.6 6.7 52 15-66 186-251 (284)
223 2jjq_A Uncharacterized RNA met 47.4 55 0.0019 26.0 6.8 42 16-63 353-394 (425)
224 1mvo_A PHOP response regulator 47.3 47 0.0016 20.4 6.4 39 14-56 45-83 (136)
225 3nhm_A Response regulator; pro 46.8 48 0.0016 20.3 6.4 43 12-57 43-86 (133)
226 1q57_A DNA primase/helicase; d 46.8 50 0.0017 26.4 6.5 43 15-58 353-404 (503)
227 2ka5_A Putative anti-sigma fac 46.8 54 0.0019 20.9 6.6 53 13-66 48-101 (125)
228 2wji_A Ferrous iron transport 46.4 40 0.0014 22.0 5.1 43 15-62 80-122 (165)
229 3q6v_A Beta-lactamase; metallo 46.3 31 0.0011 23.9 4.7 38 17-57 35-72 (233)
230 1ixk_A Methyltransferase; open 46.2 20 0.0007 27.0 3.9 43 16-58 187-249 (315)
231 1xp2_A EAD500, PLY500, L-alany 45.9 26 0.00089 25.1 4.2 34 26-59 30-63 (179)
232 1tmy_A CHEY protein, TMY; chem 44.8 49 0.0017 19.8 6.6 39 14-56 45-83 (120)
233 4b4t_J 26S protease regulatory 44.7 40 0.0014 27.0 5.6 54 8-61 233-300 (405)
234 1iqp_A RFCS; clamp loader, ext 44.7 32 0.0011 25.0 4.7 43 15-59 109-151 (327)
235 1d2n_A N-ethylmaleimide-sensit 44.6 33 0.0011 24.7 4.7 55 9-63 117-182 (272)
236 3u61_B DNA polymerase accessor 44.6 31 0.001 25.5 4.6 42 16-59 105-147 (324)
237 4b4t_L 26S protease subunit RP 44.0 69 0.0024 25.8 6.9 56 6-61 264-333 (437)
238 1jr3_D DNA polymerase III, del 44.0 18 0.00063 27.1 3.3 47 11-58 71-117 (343)
239 1ypw_A Transitional endoplasmi 43.9 20 0.00068 31.0 3.9 56 6-61 287-353 (806)
240 3lxx_A GTPase IMAP family memb 43.8 58 0.002 22.9 5.9 43 14-56 110-154 (239)
241 3k53_A Ferrous iron transport 43.8 6.7 0.00023 28.8 0.8 45 25-69 144-189 (271)
242 2qz4_A Paraplegin; AAA+, SPG7, 43.5 55 0.0019 23.0 5.7 51 9-59 91-156 (262)
243 4b4t_I 26S protease regulatory 42.8 50 0.0017 26.8 5.8 56 6-61 265-334 (437)
244 3n70_A Transport activator; si 41.9 32 0.0011 22.4 4.0 39 16-56 76-114 (145)
245 1sxj_B Activator 1 37 kDa subu 41.7 26 0.00089 25.5 3.8 42 16-59 107-148 (323)
246 3q58_A N-acetylmannosamine-6-p 41.3 73 0.0025 23.1 6.2 61 9-80 94-154 (229)
247 2vhj_A Ntpase P4, P4; non- hyd 41.0 69 0.0024 25.0 6.3 48 9-57 176-235 (331)
248 3ajd_A Putative methyltransfer 40.8 13 0.00045 27.3 2.0 43 16-58 156-214 (274)
249 3hu3_A Transitional endoplasmi 40.8 29 0.00099 28.2 4.2 53 8-60 289-352 (489)
250 1ls1_A Signal recognition part 40.4 1.9 6.5E-05 32.7 -2.8 42 34-89 24-65 (295)
251 2g1p_A DNA adenine methylase; 40.3 69 0.0024 23.9 6.0 51 16-66 174-238 (278)
252 2hqs_H Peptidoglycan-associate 40.2 57 0.0019 20.9 4.9 45 13-57 1-46 (118)
253 1zgz_A Torcad operon transcrip 39.8 60 0.002 19.4 6.5 39 14-57 44-82 (122)
254 2orw_A Thymidine kinase; TMTK, 39.7 20 0.00068 24.9 2.8 39 16-59 76-114 (184)
255 3igs_A N-acetylmannosamine-6-p 39.7 78 0.0027 22.9 6.1 61 9-80 94-154 (232)
256 4b4t_M 26S protease regulatory 39.6 50 0.0017 26.6 5.4 56 6-61 264-333 (434)
257 1dz3_A Stage 0 sporulation pro 39.3 64 0.0022 19.7 6.4 42 14-58 46-88 (130)
258 4b4t_H 26S protease regulatory 39.0 61 0.0021 26.5 5.9 56 6-61 292-361 (467)
259 2rdm_A Response regulator rece 38.7 65 0.0022 19.5 6.8 37 16-56 50-87 (132)
260 3i42_A Response regulator rece 38.5 65 0.0022 19.5 5.6 42 14-58 45-87 (127)
261 4b4t_K 26S protease regulatory 38.4 73 0.0025 25.5 6.2 54 8-61 257-324 (428)
262 4eyb_A Beta-lactamase NDM-1; m 37.4 56 0.0019 23.7 5.0 38 17-57 84-121 (270)
263 1p2f_A Response regulator; DRR 37.1 96 0.0033 21.0 6.1 38 15-56 42-79 (220)
264 2v1u_A Cell division control p 37.0 8.7 0.0003 28.8 0.5 44 16-59 130-178 (387)
265 1gml_A T-complex protein 1 sub 36.8 66 0.0023 22.4 5.1 48 14-61 25-91 (178)
266 2gxq_A Heat resistant RNA depe 36.8 8.8 0.0003 26.3 0.5 53 15-67 143-195 (207)
267 1ys7_A Transcriptional regulat 35.9 1E+02 0.0035 21.0 6.4 38 14-55 49-86 (233)
268 1srr_A SPO0F, sporulation resp 35.9 71 0.0024 19.2 7.5 39 14-56 45-83 (124)
269 4e7p_A Response regulator; DNA 35.7 82 0.0028 19.8 6.7 41 13-57 63-103 (150)
270 3b2n_A Uncharacterized protein 35.7 77 0.0026 19.5 6.9 40 14-57 47-86 (133)
271 1ne7_A Glucosamine-6-phosphate 35.5 51 0.0017 24.6 4.6 31 1-31 204-249 (289)
272 1th8_B Anti-sigma F factor ant 35.3 76 0.0026 19.3 6.1 55 11-66 36-92 (116)
273 2r25_B Osmosensing histidine p 35.3 79 0.0027 19.5 6.2 17 15-31 51-67 (133)
274 2rjn_A Response regulator rece 35.3 84 0.0029 19.8 7.1 42 14-59 49-90 (154)
275 1fs5_A Glucosamine-6-phosphate 35.2 57 0.0019 23.8 4.8 32 1-32 204-250 (266)
276 3iog_A Beta-lactamase; hydrola 35.0 38 0.0013 23.3 3.6 37 18-57 33-69 (227)
277 1vec_A ATP-dependent RNA helic 34.6 28 0.00094 23.7 2.8 53 15-67 145-197 (206)
278 2a6p_A Possible phosphoglycera 34.6 42 0.0014 23.5 3.8 26 34-59 128-155 (208)
279 1we3_A CPN60(groel); chaperoni 34.4 26 0.0009 29.0 3.0 43 14-61 213-255 (543)
280 3eod_A Protein HNR; response r 34.2 79 0.0027 19.2 5.4 17 14-30 49-65 (130)
281 2lpm_A Two-component response 34.0 31 0.0011 22.6 2.8 42 9-56 46-87 (123)
282 3eul_A Possible nitrate/nitrit 33.8 89 0.003 19.6 7.0 40 14-57 59-98 (152)
283 1p9r_A General secretion pathw 33.7 1.4 4.8E-05 35.5 -4.7 19 1-21 296-314 (418)
284 1qkk_A DCTD, C4-dicarboxylate 33.4 91 0.0031 19.7 6.5 39 15-57 46-84 (155)
285 1dbw_A Transcriptional regulat 33.4 81 0.0028 19.0 6.3 40 14-57 45-84 (126)
286 2vgn_A DOM34; translation term 33.2 92 0.0031 24.5 5.9 47 18-64 316-362 (386)
287 3cg4_A Response regulator rece 32.8 87 0.003 19.2 5.2 41 14-57 49-90 (142)
288 1ujc_A Phosphohistidine phosph 32.8 49 0.0017 22.1 3.8 32 35-67 86-118 (161)
289 1a5t_A Delta prime, HOLB; zinc 32.7 28 0.00094 26.3 2.7 43 15-59 107-149 (334)
290 1jql_B DNA polymerase III, del 32.7 39 0.0013 22.3 3.2 17 14-30 74-90 (140)
291 3bh0_A DNAB-like replicative h 32.6 95 0.0032 23.2 5.8 43 16-58 179-231 (315)
292 1kgs_A DRRD, DNA binding respo 32.5 1.2E+02 0.0039 20.5 7.4 40 13-56 43-82 (225)
293 3crn_A Response regulator rece 32.4 88 0.003 19.2 6.9 39 14-56 45-83 (132)
294 3r7a_A Phosphoglycerate mutase 32.3 41 0.0014 23.8 3.5 33 34-67 155-192 (237)
295 2ftc_D Mitochondrial ribosomal 32.2 42 0.0014 23.7 3.4 48 5-55 74-124 (175)
296 3cz5_A Two-component response 32.2 95 0.0033 19.5 7.4 40 13-56 48-87 (153)
297 3lte_A Response regulator; str 32.0 87 0.003 19.0 6.2 43 13-58 47-90 (132)
298 1a6d_A Thermosome (alpha subun 31.8 49 0.0017 27.3 4.2 47 14-60 231-296 (545)
299 3hzh_A Chemotaxis response reg 31.4 1E+02 0.0035 19.6 7.0 39 16-57 83-121 (157)
300 1h2e_A Phosphatase, YHFR; hydr 31.4 46 0.0016 23.2 3.5 26 34-59 126-153 (207)
301 1yio_A Response regulatory pro 31.3 82 0.0028 21.1 4.8 38 15-56 47-84 (208)
302 1ojl_A Transcriptional regulat 31.3 75 0.0026 23.6 5.0 41 16-57 96-146 (304)
303 1qo0_D AMIR; binding protein, 31.1 47 0.0016 22.2 3.5 38 14-56 50-87 (196)
304 3fe2_A Probable ATP-dependent 30.8 11 0.00039 26.8 0.2 54 14-67 174-227 (242)
305 1a04_A Nitrate/nitrite respons 30.5 1.2E+02 0.0042 20.3 6.7 18 14-31 49-66 (215)
306 3mm4_A Histidine kinase homolo 30.5 1.3E+02 0.0044 20.5 6.4 38 16-56 119-159 (206)
307 3hdg_A Uncharacterized protein 30.4 95 0.0033 19.0 5.9 41 14-58 49-89 (137)
308 3gl9_A Response regulator; bet 30.4 93 0.0032 18.8 5.7 19 13-31 43-61 (122)
309 3nwy_A Uridylate kinase; allos 30.3 73 0.0025 24.0 4.7 29 27-55 67-95 (281)
310 3ldg_A Putative uncharacterize 30.2 1.9E+02 0.0066 22.4 8.3 66 16-89 300-369 (384)
311 3gt7_A Sensor protein; structu 30.2 1.1E+02 0.0036 19.4 5.6 39 14-55 49-88 (154)
312 3iuy_A Probable ATP-dependent 30.1 16 0.00054 25.6 0.9 54 14-67 165-218 (228)
313 1mb3_A Cell division response 29.9 91 0.0031 18.6 5.3 40 14-56 43-83 (124)
314 2qr3_A Two-component system re 29.7 98 0.0034 18.9 6.6 40 14-57 45-90 (140)
315 1sbo_A Putative anti-sigma fac 29.6 94 0.0032 18.6 8.4 54 12-66 38-93 (110)
316 1a6d_B Thermosome (beta subuni 29.5 67 0.0023 26.4 4.7 47 14-60 232-297 (543)
317 3m4x_A NOL1/NOP2/SUN family pr 29.5 31 0.0011 27.9 2.6 42 15-56 174-235 (456)
318 2p65_A Hypothetical protein PF 29.5 9.5 0.00032 25.2 -0.4 44 16-59 115-163 (187)
319 1i3c_A Response regulator RCP1 29.4 1.1E+02 0.0037 19.2 5.1 16 16-31 61-76 (149)
320 1lv7_A FTSH; alpha/beta domain 29.3 1.5E+02 0.0051 20.8 6.2 52 9-60 97-162 (257)
321 3n53_A Response regulator rece 29.3 76 0.0026 19.6 4.1 18 13-30 43-60 (140)
322 3io5_A Recombination and repai 29.1 1.4E+02 0.0049 23.2 6.3 56 4-59 95-173 (333)
323 2gno_A DNA polymerase III, gam 29.0 34 0.0012 25.8 2.7 41 17-59 83-123 (305)
324 3heb_A Response regulator rece 28.9 1.1E+02 0.0037 19.2 5.1 18 14-31 57-74 (152)
325 3grc_A Sensor protein, kinase; 28.8 1E+02 0.0035 18.9 6.9 44 13-59 47-91 (140)
326 1zh2_A KDP operon transcriptio 28.4 95 0.0033 18.3 4.4 18 14-31 43-60 (121)
327 3o6c_A PNP synthase, pyridoxin 28.1 1.3E+02 0.0043 22.8 5.6 56 9-65 79-142 (260)
328 3ilx_A First ORF in transposon 27.8 1.3E+02 0.0046 19.8 5.4 50 4-56 22-71 (143)
329 1xwi_A SKD1 protein; VPS4B, AA 27.7 1.9E+02 0.0065 21.5 6.8 52 8-59 97-160 (322)
330 3cmu_A Protein RECA, recombina 27.6 98 0.0034 30.1 5.9 52 6-58 1493-1564(2050)
331 3mbk_A Ubiquitin-associated an 27.6 56 0.0019 23.5 3.6 25 35-59 168-196 (264)
332 3c7t_A Ecdysteroid-phosphate p 27.5 63 0.0021 23.3 3.8 31 35-66 167-201 (263)
333 1k68_A Phytochrome response re 27.5 1.1E+02 0.0036 18.5 5.9 40 15-57 54-95 (140)
334 1yf3_A DNA adenine methylase; 27.5 1.6E+02 0.0055 21.5 6.1 43 16-58 164-214 (259)
335 2b4a_A BH3024; flavodoxin-like 27.3 80 0.0027 19.4 4.0 40 15-58 59-99 (138)
336 3cmw_A Protein RECA, recombina 27.3 1.8E+02 0.0062 27.7 7.5 53 7-59 450-521 (1706)
337 3lxw_A GTPase IMAP family memb 27.3 1.1E+02 0.0039 21.7 5.2 55 5-60 91-151 (247)
338 3gp3_A 2,3-bisphosphoglycerate 27.1 57 0.0019 23.4 3.5 32 34-66 164-199 (257)
339 1wxx_A TT1595, hypothetical pr 27.0 41 0.0014 25.9 2.8 43 15-57 278-327 (382)
340 4hbz_A Putative phosphohistidi 26.9 77 0.0026 22.0 4.1 26 34-59 98-123 (186)
341 3d4i_A STS-2 protein; PGM, 2H- 26.8 73 0.0025 23.0 4.1 25 35-59 177-205 (273)
342 2qsj_A DNA-binding response re 26.5 1.1E+02 0.0038 19.1 4.6 39 15-57 49-87 (154)
343 1h1n_A Endo type cellulase ENG 26.4 1.3E+02 0.0043 22.2 5.4 35 24-58 61-95 (305)
344 1jbe_A Chemotaxis protein CHEY 26.4 1.1E+02 0.0037 18.3 5.9 18 14-31 47-64 (128)
345 2pl1_A Transcriptional regulat 26.3 1.1E+02 0.0036 18.1 7.0 39 14-56 42-80 (121)
346 1xhf_A DYE resistance, aerobic 26.3 1.1E+02 0.0037 18.2 7.1 38 14-56 45-82 (123)
347 3cfy_A Putative LUXO repressor 26.2 1.2E+02 0.0041 18.7 6.6 40 14-57 46-85 (137)
348 3eqz_A Response regulator; str 26.1 99 0.0034 18.6 4.2 40 16-59 46-85 (135)
349 1uwv_A 23S rRNA (uracil-5-)-me 25.5 1.5E+02 0.0051 23.2 6.0 44 16-66 356-399 (433)
350 4dcu_A GTP-binding protein ENG 25.5 67 0.0023 25.4 3.9 55 3-61 89-144 (456)
351 4emb_A 2,3-bisphosphoglycerate 25.4 62 0.0021 23.5 3.5 32 34-66 182-217 (274)
352 2qv0_A Protein MRKE; structura 25.4 1.2E+02 0.0042 18.6 5.0 42 14-59 53-94 (143)
353 3k0b_A Predicted N6-adenine-sp 25.3 2.4E+02 0.0082 21.9 8.0 65 16-89 307-376 (393)
354 2r2a_A Uncharacterized protein 25.3 43 0.0015 23.7 2.5 42 16-60 87-135 (199)
355 1w4r_A Thymidine kinase; type 25.0 68 0.0023 23.0 3.5 40 14-59 89-128 (195)
356 2pl3_A Probable ATP-dependent 24.9 25 0.00085 24.7 1.1 53 15-67 170-222 (236)
357 2zay_A Response regulator rece 24.9 1.3E+02 0.0044 18.6 6.7 41 14-57 50-91 (147)
358 2j48_A Two-component sensor ki 24.8 1.1E+02 0.0037 17.7 5.8 41 14-57 43-84 (119)
359 2www_A Methylmalonic aciduria 24.8 35 0.0012 26.2 2.1 39 16-62 252-290 (349)
360 3hv2_A Response regulator/HD d 24.8 1.3E+02 0.0046 18.8 7.0 42 13-58 55-96 (153)
361 1k66_A Phytochrome response re 24.7 1.3E+02 0.0043 18.4 5.9 17 15-31 61-77 (149)
362 3p9d_G T-complex protein 1 sub 24.6 1.2E+02 0.0041 25.0 5.4 47 14-60 236-301 (550)
363 3bor_A Human initiation factor 24.6 22 0.00076 25.2 0.8 53 15-67 172-224 (237)
364 1wp9_A ATP-dependent RNA helic 24.5 2.2E+02 0.0075 21.2 6.8 59 5-68 14-72 (494)
365 2bjv_A PSP operon transcriptio 24.5 96 0.0033 22.0 4.3 41 16-57 100-150 (265)
366 1fzt_A Phosphoglycerate mutase 24.3 69 0.0023 22.2 3.4 31 35-66 138-172 (211)
367 3cmw_A Protein RECA, recombina 24.3 2.2E+02 0.0076 27.1 7.5 70 15-87 809-903 (1706)
368 3agj_B Protein pelota homolog; 24.2 1.1E+02 0.0037 23.8 4.8 47 18-64 291-337 (358)
369 1p6q_A CHEY2; chemotaxis, sign 24.1 1.2E+02 0.0042 18.1 5.9 41 14-57 49-90 (129)
370 3vfd_A Spastin; ATPase, microt 24.1 1.7E+02 0.0057 22.3 5.9 52 9-60 200-264 (389)
371 3k7i_B IHH, HHG-2, indian hedg 24.1 24 0.00082 25.5 0.9 31 15-45 70-100 (187)
372 3t15_A Ribulose bisphosphate c 24.1 60 0.002 24.0 3.2 12 14-25 97-108 (293)
373 3c3m_A Response regulator rece 24.0 1.3E+02 0.0045 18.4 6.2 41 14-57 45-86 (138)
374 1qhf_A Protein (phosphoglycera 24.0 81 0.0028 22.3 3.8 33 33-66 154-190 (240)
375 3tsm_A IGPS, indole-3-glycerol 23.9 2.3E+02 0.0078 21.2 7.8 52 9-65 135-186 (272)
376 3kkk_A Phosphoglycerate mutase 23.7 71 0.0024 22.8 3.5 33 33-66 165-201 (258)
377 1e58_A Phosphoglycerate mutase 23.7 82 0.0028 22.4 3.8 26 33-58 156-185 (249)
378 1sqg_A SUN protein, FMU protei 23.6 36 0.0012 26.7 2.0 41 16-56 315-375 (429)
379 2qzj_A Two-component response 23.6 1.4E+02 0.0046 18.4 5.0 18 14-31 46-63 (136)
380 3mxo_A Serine/threonine-protei 23.6 91 0.0031 21.4 3.9 26 33-58 113-145 (202)
381 1mqo_A Beta-lactamase II; alph 23.4 1.4E+02 0.0047 20.6 4.9 37 18-57 51-87 (227)
382 1iy2_A ATP-dependent metallopr 23.4 0.92 3.1E-05 33.6 -7.1 23 1-25 172-194 (278)
383 3n1g_B Desert hedgehog protein 23.4 34 0.0012 24.3 1.5 40 16-55 63-108 (170)
384 3e9c_A ZGC:56074; histidine ph 23.3 75 0.0026 23.0 3.6 19 48-67 175-193 (265)
385 1ixz_A ATP-dependent metallopr 23.3 0.84 2.9E-05 33.2 -7.2 24 1-26 148-171 (254)
386 2qvg_A Two component response 23.1 1.4E+02 0.0047 18.3 5.3 41 15-58 58-99 (143)
387 1c9k_A COBU, adenosylcobinamid 23.1 1.9E+02 0.0067 20.1 7.4 54 34-87 112-176 (180)
388 3t8y_A CHEB, chemotaxis respon 23.1 1.5E+02 0.0053 18.9 6.1 19 13-31 68-86 (164)
389 3ilh_A Two component response 23.1 1.4E+02 0.0046 18.3 7.1 40 15-57 59-101 (146)
390 2q6t_A DNAB replication FORK h 23.0 1.8E+02 0.0063 22.7 6.0 47 3-54 269-316 (444)
391 2j5v_A Glutamate 5-kinase; pro 22.9 1.1E+02 0.0036 24.0 4.5 32 25-56 19-50 (367)
392 3zxn_A RSBS, anti-sigma-factor 22.8 1.6E+02 0.0053 18.8 6.8 48 15-62 41-89 (123)
393 3ber_A Probable ATP-dependent 22.8 23 0.00077 25.5 0.6 53 15-67 185-237 (249)
394 2a9o_A Response regulator; ess 22.7 1.2E+02 0.0043 17.7 7.4 39 14-57 43-82 (120)
395 3eie_A Vacuolar protein sortin 22.6 2E+02 0.0069 21.1 6.0 52 9-60 103-166 (322)
396 3kyj_B CHEY6 protein, putative 22.4 84 0.0029 19.6 3.3 15 16-30 60-74 (145)
397 3lua_A Response regulator rece 22.4 1.4E+02 0.0048 18.2 6.6 39 15-56 49-89 (140)
398 3r0j_A Possible two component 22.3 2E+02 0.0068 19.9 7.4 19 13-31 64-82 (250)
399 2qxy_A Response regulator; reg 22.3 1.4E+02 0.0049 18.2 7.1 39 14-57 46-84 (142)
400 4a7w_A Uridylate kinase; trans 22.1 1.5E+02 0.0051 21.4 5.0 28 27-54 25-52 (240)
401 3bgw_A DNAB-like replicative h 22.1 1.4E+02 0.0047 23.7 5.2 46 4-54 268-316 (444)
402 3rqi_A Response regulator prot 22.0 1.3E+02 0.0046 19.7 4.5 41 13-57 48-89 (184)
403 1i4n_A Indole-3-glycerol phosp 22.0 2.4E+02 0.0083 20.8 7.4 52 9-65 116-167 (251)
404 3kto_A Response regulator rece 22.0 99 0.0034 19.0 3.6 38 15-56 49-88 (136)
405 3p9d_A T-complex protein 1 sub 22.0 1.2E+02 0.004 25.1 4.8 44 16-59 241-303 (559)
406 1ex9_A Lactonizing lipase; alp 21.9 1.6E+02 0.0056 21.2 5.2 51 9-59 31-84 (285)
407 4a3s_A 6-phosphofructokinase; 21.8 1.1E+02 0.0037 23.5 4.3 57 6-67 175-233 (319)
408 3jte_A Response regulator rece 21.7 1.5E+02 0.0051 18.2 7.5 38 15-56 48-85 (143)
409 1z9d_A Uridylate kinase, UK, U 21.6 1.5E+02 0.0052 21.3 5.0 33 23-55 21-53 (252)
410 3ek6_A Uridylate kinase; UMPK 21.6 1.5E+02 0.0052 21.4 5.0 30 26-55 26-55 (243)
411 2hhj_A Bisphosphoglycerate mut 21.5 83 0.0028 22.8 3.5 27 33-59 161-191 (267)
412 1qde_A EIF4A, translation init 21.5 33 0.0011 23.6 1.2 53 15-67 154-206 (224)
413 2zts_A Putative uncharacterize 21.3 73 0.0025 22.0 3.1 45 14-58 133-182 (251)
414 3obw_A Protein pelota homolog; 21.2 1.1E+02 0.0038 23.9 4.3 46 18-64 304-349 (364)
415 3m0z_A Putative aldolase; MCSG 21.1 28 0.00095 26.2 0.7 34 8-44 178-211 (249)
416 3l6n_A Metallo-beta-lactamase; 20.9 1.1E+02 0.0036 20.9 3.8 38 17-57 40-77 (219)
417 1t6n_A Probable ATP-dependent 20.9 39 0.0013 23.3 1.5 54 14-67 156-210 (220)
418 3t6k_A Response regulator rece 20.8 1.6E+02 0.0053 18.1 6.0 41 13-56 45-86 (136)
419 3m6m_D Sensory/regulatory prot 20.8 1.6E+02 0.0055 18.3 6.4 43 14-59 56-102 (143)
420 3ldu_A Putative methylase; str 20.7 2.3E+02 0.0078 21.9 6.1 65 16-89 301-370 (385)
421 2chq_A Replication factor C sm 20.7 23 0.00079 25.7 0.2 43 15-59 101-143 (319)
422 3m6y_A 4-hydroxy-2-oxoglutarat 20.6 29 0.00098 26.5 0.7 34 8-44 201-234 (275)
423 3kht_A Response regulator; PSI 20.6 1.6E+02 0.0054 18.1 5.3 18 14-31 49-66 (144)
424 1tue_A Replication protein E1; 20.5 1.1E+02 0.0038 22.3 4.0 12 15-26 102-113 (212)
425 2jba_A Phosphate regulon trans 20.5 1.3E+02 0.0044 17.9 3.9 17 15-31 45-61 (127)
426 2it2_A UPF0130 protein PH1069; 20.5 51 0.0018 23.9 2.1 55 16-89 55-109 (200)
427 4dad_A Putative pilus assembly 20.4 1.6E+02 0.0055 18.1 6.5 39 15-57 66-104 (146)
428 1jbk_A CLPB protein; beta barr 20.4 42 0.0014 21.8 1.5 45 15-59 114-162 (195)
429 2as0_A Hypothetical protein PH 20.4 57 0.002 25.2 2.5 43 15-57 288-337 (396)
430 1kp8_A Groel protein; chaperon 20.4 31 0.0011 28.6 1.0 42 14-60 214-255 (547)
431 4hl2_A Beta-lactamase NDM-1; s 20.3 1.8E+02 0.0061 20.2 5.0 37 18-57 58-94 (243)
432 3iyg_B T-complex protein 1 sub 20.3 1.6E+02 0.0054 24.0 5.2 46 14-59 219-284 (513)
433 3hjg_A Putative alpha-ribazole 20.3 82 0.0028 22.0 3.1 33 33-66 125-158 (213)
434 1q3q_A Thermosome alpha subuni 20.2 58 0.002 26.9 2.6 47 14-60 234-299 (548)
435 2a1f_A Uridylate kinase; PYRH, 20.2 1.7E+02 0.0057 21.0 4.9 33 23-55 22-54 (247)
436 3syl_A Protein CBBX; photosynt 20.1 1.7E+02 0.006 20.9 5.1 41 16-57 130-178 (309)
437 4eo9_A 2,3-bisphosphoglycerate 20.1 31 0.0011 25.2 0.8 32 34-66 180-215 (268)
No 1
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=4.8e-28 Score=186.82 Aligned_cols=89 Identities=35% Similarity=0.596 Sum_probs=84.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+||| ++
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~-----------v~ 224 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH-----------VI 224 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 225 ~l~~G~i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 225 FLHQGKIEEEGDPEQVFGNP 244 (262)
T ss_dssp EEETTEEEEEECHHHHHHSC
T ss_pred EEECCEEEEeCCHHHHHhCc
Confidence 99999999999999988653
No 2
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=9.3e-28 Score=184.99 Aligned_cols=100 Identities=31% Similarity=0.569 Sum_probs=88.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+||+ ++
T Consensus 149 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~-----------v~ 217 (256)
T 1vpl_A 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR-----------IA 217 (256)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999888877 77
Q ss_pred EeeCceEEeecChhHHhhccCcchHHHHHHH
Q psy6322 81 LMREGVLLAEESPASLMARRNVDSLETAFLQ 111 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~~~~~~~~~~~ 111 (128)
+|++|+++..|+++++........+.+.|..
T Consensus 218 ~l~~G~i~~~g~~~~~~~~~~~~~l~~~~~~ 248 (256)
T 1vpl_A 218 LIHNGTIVETGTVEELKERYKAQNIEEVFEE 248 (256)
T ss_dssp EEETTEEEEEEEHHHHHHHTTCSSHHHHHHH
T ss_pred EEECCEEEEecCHHHHHHhcchhhHHHHHHH
Confidence 9999999999999998764333456666654
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=1.5e-27 Score=184.52 Aligned_cols=89 Identities=30% Similarity=0.565 Sum_probs=84.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++++..+||| ++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~-----------v~ 230 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR-----------VL 230 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999999988887 77
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 231 ~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 231 FMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp EEETTEEEEEECHHHHHHSC
T ss_pred EEECCEEEEECCHHHHHhCc
Confidence 99999999999999987653
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=9.3e-28 Score=193.73 Aligned_cols=90 Identities=28% Similarity=0.585 Sum_probs=84.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+++|++|||||||+||||.++..++++|+++.+ .|.|||++|||++++.++||| |
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr-----------v 234 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDC-----------V 234 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE-----------E
Confidence 7999999999999999999999999999999999999999999975 499999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|++++.|++++++..+.
T Consensus 235 ~vl~~G~iv~~g~~~ev~~~p~ 256 (366)
T 3tui_C 235 AVISNGELIEQDTVSEVFSHPK 256 (366)
T ss_dssp EEEETTEEEECCBHHHHHSSCC
T ss_pred EEEECCEEEEEcCHHHHHhCCC
Confidence 8999999999999999987653
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=4.2e-28 Score=188.81 Aligned_cols=88 Identities=41% Similarity=0.661 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+.++..+++.+.++. ++|+|||++||+++++..+||| |
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~dr-----------v 214 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDN-----------V 214 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCE-----------E
Confidence 799999999999999999999999999999999999999999997 5599999999999998888877 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|++++.|++++++..
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 215 FVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEEETTEEEEEECHHHHTHH
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 89999999999999998764
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.5e-27 Score=180.44 Aligned_cols=87 Identities=24% Similarity=0.517 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+||| ++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~-----------v~ 210 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY-----------GY 210 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999977799999999999999888887 77
Q ss_pred EeeCceEEeecChhHHhh
Q psy6322 81 LMREGVLLAEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~ 98 (128)
+|++|+++..|++++++.
T Consensus 211 ~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 211 VLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEETTEEEEEEEHHHHHT
T ss_pred EEECCEEEEEcCHHHHhc
Confidence 999999999999988865
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=1.1e-27 Score=185.37 Aligned_cols=88 Identities=32% Similarity=0.449 Sum_probs=82.6
Q ss_pred ChHhHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVALLH------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
||||||++|||||++ +|++|||||||+|||+.++..+++.+++++++ |+|||++|||++++.++|||
T Consensus 144 gGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~------ 217 (266)
T 4g1u_C 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR------ 217 (266)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE------
T ss_pred HHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE------
Confidence 799999999999999 99999999999999999999999999999755 68999999999999999887
Q ss_pred hhcceEEEeeCceEEeecChhHHhhc
Q psy6322 74 RQAHIIGLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 74 ~~~~~v~vl~~G~i~~~~~~~~l~~~ 99 (128)
+++|++|++++.|++++++..
T Consensus 218 -----v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 218 -----IMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp -----EEEEETTEEEEEECHHHHCCH
T ss_pred -----EEEEECCEEEEEcCHHHHhCc
Confidence 779999999999999998753
No 8
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=2.2e-27 Score=181.30 Aligned_cols=89 Identities=27% Similarity=0.458 Sum_probs=83.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|+++||||||+|||+.++..+++.+.++.++ |+|||++||+++++..+||| +
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~-----------i 197 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE-----------V 197 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999754 99999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++...
T Consensus 198 ~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 198 AVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCEEEEECCHHHHHhCc
Confidence 799999999999999987654
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.94 E-value=6.8e-27 Score=188.26 Aligned_cols=90 Identities=37% Similarity=0.608 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.+.++. +.|.|+|++|||++++..+||| |
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDr-----------i 209 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADR-----------I 209 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCE-----------E
Confidence 799999999999999999999999999999999999999888875 5699999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 210 ~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 210 AVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EEEETTEEEEEECHHHHHHSCS
T ss_pred EEEECCEEEEEeCHHHHHhCcc
Confidence 8999999999999999987643
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=2.2e-27 Score=182.35 Aligned_cols=84 Identities=27% Similarity=0.539 Sum_probs=79.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.+++++|+|||++||+++++..+||| ++
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~-----------v~ 224 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH-----------LY 224 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999988878777 77
Q ss_pred EeeCceEEeecChhH
Q psy6322 81 LMREGVLLAEESPAS 95 (128)
Q Consensus 81 vl~~G~i~~~~~~~~ 95 (128)
+|++|+++..|++++
T Consensus 225 ~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 225 VMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEETTEEEEEEESHH
T ss_pred EEECCEEEEEeCHHH
Confidence 999999999998887
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.94 E-value=3.7e-27 Score=179.15 Aligned_cols=85 Identities=34% Similarity=0.519 Sum_probs=75.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|++|||||||+|||+.++..+++.+.++.++ |+|||++|||++. .++||| +
T Consensus 148 gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~-----------i 215 (235)
T 3tif_A 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGER-----------I 215 (235)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999765 9999999999984 456666 8
Q ss_pred EEeeCceEEeecChhHHh
Q psy6322 80 GLMREGVLLAEESPASLM 97 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~ 97 (128)
++|++|+++..++++++.
T Consensus 216 ~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp EEEETTEEEEEEECC---
T ss_pred EEEECCEEEEEcChhhhc
Confidence 899999999998876643
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=1e-26 Score=188.49 Aligned_cols=90 Identities=28% Similarity=0.452 Sum_probs=85.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| |
T Consensus 136 GGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDr-----------i 204 (381)
T 3rlf_A 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK-----------I 204 (381)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999755 99999999999999999988 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 205 ~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 205 VVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp EEEETTEEEEEECHHHHHHCCS
T ss_pred EEEECCEEEEEeCHHHHHhCCc
Confidence 8999999999999999987653
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=2e-26 Score=185.28 Aligned_cols=89 Identities=28% Similarity=0.469 Sum_probs=84.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| +
T Consensus 148 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr-----------i 216 (355)
T 1z47_A 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADR-----------V 216 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999755 99999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 217 ~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 217 LVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCEEEEEcCHHHHHhCc
Confidence 799999999999999998764
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.94 E-value=1.8e-26 Score=185.17 Aligned_cols=89 Identities=30% Similarity=0.515 Sum_probs=84.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| +
T Consensus 143 GGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr-----------i 211 (353)
T 1oxx_K 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR-----------V 211 (353)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999754 99999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 212 ~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 212 GVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCEEEEEcCHHHHHhCc
Confidence 899999999999999998764
No 15
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.94 E-value=2.2e-26 Score=176.86 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=81.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++ |+|||++||+++++..+||+ +
T Consensus 131 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~-----------v 199 (253)
T 2nq2_C 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANK-----------T 199 (253)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE-----------E
Confidence 69999999999999999999999999999999999999999999876 99999999999999888887 7
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+ +..|++++++.
T Consensus 200 ~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 200 LLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EEEETTE-EEEEEHHHHCC
T ss_pred EEEeCCe-EecCCHHHHhC
Confidence 7999999 99999888764
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=2.2e-26 Score=184.50 Aligned_cols=90 Identities=34% Similarity=0.573 Sum_probs=84.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.+ .|.|+|++|||++++..+||| +
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adr-----------i 198 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR-----------I 198 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 7999999999999999999999999999999999999999999865 499999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhccC
Q psy6322 80 GLMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~~ 101 (128)
++|++|+++..|++++++..+.
T Consensus 199 ~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 199 AVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp EEESSSCEEEEECHHHHHSSCC
T ss_pred EEEECCEEEEECCHHHHHhCcc
Confidence 7999999999999999987643
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=2.4e-26 Score=184.99 Aligned_cols=89 Identities=30% Similarity=0.505 Sum_probs=84.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| +
T Consensus 136 gGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr-----------i 204 (359)
T 2yyz_A 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR-----------I 204 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999998754 99999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 205 ~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 205 AVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCEEEEeCCHHHHHhCc
Confidence 899999999999999998764
No 18
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=9.3e-27 Score=179.81 Aligned_cols=89 Identities=29% Similarity=0.514 Sum_probs=82.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+||| ++
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~-----------v~ 209 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDR-----------VV 209 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999976799999999999988777776 78
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+++..|++++++...
T Consensus 210 ~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 210 VLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp EEETTEEEEEEEHHHHHHHS
T ss_pred EEECCEEEEeCCHHHHhcCc
Confidence 99999999999999887653
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.93 E-value=3e-26 Score=185.05 Aligned_cols=89 Identities=30% Similarity=0.510 Sum_probs=84.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| +
T Consensus 142 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr-----------i 210 (372)
T 1g29_1 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR-----------I 210 (372)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999998754 99999999999999999987 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 211 ~vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 211 AVMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCEEEEeCCHHHHHhCc
Confidence 799999999999999998764
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=2.1e-26 Score=185.51 Aligned_cols=89 Identities=34% Similarity=0.576 Sum_probs=84.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| +
T Consensus 136 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr-----------i 204 (362)
T 2it1_A 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR-----------I 204 (362)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999754 99999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 205 ~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 205 AVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCEEEEEcCHHHHHhCc
Confidence 899999999999999998764
No 21
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.93 E-value=3.9e-26 Score=184.46 Aligned_cols=89 Identities=31% Similarity=0.505 Sum_probs=84.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++|||++++..+||| +
T Consensus 144 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr-----------i 212 (372)
T 1v43_A 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR-----------I 212 (372)
T ss_dssp SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 79999999999999999999999999999999999999999999755 99999999999999999887 7
Q ss_pred EEeeCceEEeecChhHHhhcc
Q psy6322 80 GLMREGVLLAEESPASLMARR 100 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~~ 100 (128)
++|++|+++..|++++++..+
T Consensus 213 ~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 213 AVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp EEEETTEEEEEECHHHHHHCC
T ss_pred EEEECCEEEEeCCHHHHHhCc
Confidence 899999999999999998764
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=2.3e-26 Score=173.55 Aligned_cols=80 Identities=35% Similarity=0.532 Sum_probs=74.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++|+|||++||+++++ .+||+ ++
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~-----------v~ 210 (224)
T 2pcj_A 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHR-----------TL 210 (224)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987799999999999976 67766 88
Q ss_pred EeeCceEEeecC
Q psy6322 81 LMREGVLLAEES 92 (128)
Q Consensus 81 vl~~G~i~~~~~ 92 (128)
+|++|+++..|+
T Consensus 211 ~l~~G~i~~~g~ 222 (224)
T 2pcj_A 211 EMKDGKVVGEIT 222 (224)
T ss_dssp EEETTEEEEEEE
T ss_pred EEECCEEEEEee
Confidence 999999998875
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=9.6e-27 Score=181.25 Aligned_cols=87 Identities=31% Similarity=0.533 Sum_probs=81.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEE--EEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTV--MITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tv--i~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++|+|| |++||+++++..+|||
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~----------- 232 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSK----------- 232 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCE-----------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCE-----------
Confidence 699999999999999999999999999999999999999999997669999 9999999988777776
Q ss_pred EEEeeCceEEeecChhHHhh
Q psy6322 79 IGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 79 v~vl~~G~i~~~~~~~~l~~ 98 (128)
+++|++|+++..|++++++.
T Consensus 233 v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 233 ILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp EEEEETTEEEEEEEHHHHCS
T ss_pred EEEEECCEEEEECCHHHHhc
Confidence 88999999999999988764
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=1.5e-26 Score=178.90 Aligned_cols=86 Identities=22% Similarity=0.378 Sum_probs=78.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-HhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-CAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+ ||| +
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~-----------v 235 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDY-----------V 235 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSE-----------E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCE-----------E
Confidence 6999999999999999999999999999999999999999999876699999999999977654 555 8
Q ss_pred EEeeCceEEeecChhHHh
Q psy6322 80 GLMREGVLLAEESPASLM 97 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~ 97 (128)
++|++|+++..|+++++.
T Consensus 236 ~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 236 HVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EEEETTEEEEEECTTHHH
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 899999999999887654
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=3.9e-26 Score=175.31 Aligned_cols=87 Identities=24% Similarity=0.422 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVALLHNPD-------LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~-------lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
||||||++|||||+.+|+ +|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+||+
T Consensus 129 gGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~------ 202 (249)
T 2qi9_C 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHR------ 202 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE------
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE------
Confidence 699999999999999999 9999999999999999999999999976799999999999999888887
Q ss_pred hhcceEEEeeCceEEeecChhHHhh
Q psy6322 74 RQAHIIGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 74 ~~~~~v~vl~~G~i~~~~~~~~l~~ 98 (128)
+++|++|++++.|+++++..
T Consensus 203 -----v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 203 -----AWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp -----EEEEETTEEEEEEEHHHHSC
T ss_pred -----EEEEECCEEEEeCCHHHHhc
Confidence 77999999999999988764
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=7.1e-26 Score=173.34 Aligned_cols=86 Identities=30% Similarity=0.533 Sum_probs=78.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||+|||+.++..+++.|.++. +|+|||++||+++++.. ||+ ++
T Consensus 148 gGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~-----------v~ 214 (247)
T 2ff7_A 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADR-----------II 214 (247)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCE-----------EE
Confidence 699999999999999999999999999999999999999999984 69999999999997643 554 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 215 ~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 215 VMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp EEETTEEEEEECHHHHHTS
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999998764
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.93 E-value=2.5e-26 Score=175.87 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=75.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-HhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-CAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|++|||||||+|||+.++..+++.|.++.++|+|||++||+++++..+ ||| +
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~-----------v 214 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDK-----------V 214 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCE-----------E
Confidence 7999999999999999999999999999999999999999999876799999999999987666 365 8
Q ss_pred EEeeCceEEeecChh
Q psy6322 80 GLMREGVLLAEESPA 94 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~ 94 (128)
++|++|+++..|+++
T Consensus 215 ~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 215 HVMMDGRVVATGGPE 229 (250)
T ss_dssp EEEETTEEEEEESHH
T ss_pred EEEECCEEEEEeCHH
Confidence 899999999999876
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=1.4e-25 Score=177.07 Aligned_cols=86 Identities=23% Similarity=0.502 Sum_probs=79.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..|++.|.++. +++|+|++||+++.+.. ||| |+
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~-----------i~ 259 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQ-----------IL 259 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSE-----------EE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCE-----------EE
Confidence 799999999999999999999999999999999999999999985 47999999999998754 655 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+|+..|++++++..
T Consensus 260 vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 260 VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp EEETTEEEEEECHHHHHHH
T ss_pred EEECCEEEEECCHHHHHhc
Confidence 9999999999999999875
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=7.9e-26 Score=175.25 Aligned_cols=87 Identities=33% Similarity=0.459 Sum_probs=79.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|++|||||||+|||+.++..+++.|.++.+ .|+|||++||+++++.. ||+ +
T Consensus 159 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~-----------v 226 (271)
T 2ixe_A 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHH-----------I 226 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSE-----------E
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCE-----------E
Confidence 6999999999999999999999999999999999999999999864 49999999999997753 655 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 227 ~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 227 LFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEEETTEEEEEECHHHHHHH
T ss_pred EEEECCEEEEECCHHHHHhC
Confidence 89999999999999998764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=7.5e-26 Score=172.44 Aligned_cols=86 Identities=29% Similarity=0.473 Sum_probs=79.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||+|||+.++..+++.|.++. +|+|||++||+++++. .||| ++
T Consensus 142 gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~-----------v~ 208 (243)
T 1mv5_A 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADK-----------IY 208 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCE-----------EE
Confidence 699999999999999999999999999999999999999999987 6999999999999774 4666 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 209 ~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 209 FIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEETTEECCCSCHHHHHHH
T ss_pred EEECCEEEEeCCHHHHHhc
Confidence 9999999999999988753
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.92 E-value=1.5e-25 Score=172.66 Aligned_cols=86 Identities=23% Similarity=0.437 Sum_probs=78.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+..+..+++.|.++.+ |+|||++||+++.+. .|| +++
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~-~~d-----------~i~ 224 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTIS-SAE-----------SII 224 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGST-TCS-----------EEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hCC-----------EEE
Confidence 6999999999999999999999999999999999999999999864 899999999999663 255 588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|++++++..
T Consensus 225 ~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 225 LLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp EEETTEEEEEECHHHHHHH
T ss_pred EEECCEEEEECCHHHHHhc
Confidence 9999999999999998764
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=4.9e-25 Score=166.78 Aligned_cols=86 Identities=30% Similarity=0.395 Sum_probs=76.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRL-VEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l-~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+++|+++||||||+|||+.++..+++.+ .++. +|+|||++||+++++. .||+ +
T Consensus 133 gGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~-----------v 199 (229)
T 2pze_A 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADK-----------I 199 (229)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSE-----------E
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCE-----------E
Confidence 69999999999999999999999999999999999999974 5554 4899999999999774 3666 8
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 200 ~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 200 LILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEETTEEEEEECHHHHHTC
T ss_pred EEEECCEEEEECCHHHHHhc
Confidence 89999999999999988754
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=3.4e-25 Score=171.36 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh-HHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA-KLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d-~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ |||++||+++++.++|| + +
T Consensus 131 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~-----------i 196 (263)
T 2pjz_A 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYK-----------A 196 (263)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSE-----------E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCce-----------E
Confidence 6999999999999999999999999999999999999999998753 99999999998877777 7 7
Q ss_pred EEeeCceEEeecChhHHhhc
Q psy6322 80 GLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~~ 99 (128)
++|++|+++..|++++++..
T Consensus 197 ~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 197 YFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEEETTEEEEEEEHHHHHTE
T ss_pred EEEECCEEEEecCHHHHHhh
Confidence 79999999999999988753
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=166.94 Aligned_cols=86 Identities=31% Similarity=0.472 Sum_probs=76.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV---EMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~---~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+. ++ .+|+|||++||+++++. .||+
T Consensus 130 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~-~~d~---------- 197 (237)
T 2cbz_A 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLP-QVDV---------- 197 (237)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGG-GSSE----------
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHH-hCCE----------
Confidence 699999999999999999999999999999999999999995 33 35899999999998763 4555
Q ss_pred eEEEeeCceEEeecChhHHhhc
Q psy6322 78 IIGLMREGVLLAEESPASLMAR 99 (128)
Q Consensus 78 ~v~vl~~G~i~~~~~~~~l~~~ 99 (128)
+++|++|+++..|++++++..
T Consensus 198 -v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 198 -IIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp -EEEEETTEEEEEECHHHHHHH
T ss_pred -EEEEeCCEEEEeCCHHHHhhc
Confidence 889999999999999988764
No 35
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=1.1e-23 Score=177.85 Aligned_cols=86 Identities=29% Similarity=0.457 Sum_probs=79.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||+|||+.++..+.+.+.++. +|+|+|++||+++.+.. ||| |+
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~-----------i~ 560 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADL-----------II 560 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCE-----------EE
Confidence 799999999999999999999999999999999999999999985 58999999999998754 655 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++++.
T Consensus 561 ~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 561 VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp EECSSSEEECSCHHHHHHT
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999875
No 36
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=7.9e-24 Score=178.62 Aligned_cols=86 Identities=37% Similarity=0.517 Sum_probs=79.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||++||+.+++.+.+.++++. +|+|+|++||+++.+. .|| +|+
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d-----------~i~ 548 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LAD-----------KIL 548 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSS-----------EEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCC-----------EEE
Confidence 799999999999999999999999999999999999999999874 5899999999999763 455 588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++++.
T Consensus 549 vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 549 VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp EEETTEEEEEECHHHHHHH
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999865
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.90 E-value=1.2e-23 Score=177.08 Aligned_cols=86 Identities=34% Similarity=0.516 Sum_probs=79.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||+|||+.++..+.+.+.++. +|+|+|++||+++.+. .||| |+
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~-----------i~ 549 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADE-----------IL 549 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCE-----------EE
Confidence 799999999999999999999999999999999999999999985 4899999999999775 4665 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++++.
T Consensus 550 ~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 550 VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999865
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=7.1e-24 Score=178.40 Aligned_cols=86 Identities=31% Similarity=0.488 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||+|||+.++..+.+.+.++. +++|+|++||+++.+. .||+|+
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~------------~~d~i~ 546 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTIT------------HADKIV 546 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTT------------TCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH------------cCCEEE
Confidence 799999999999999999999999999999999999999999885 5799999999999653 345588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++++.
T Consensus 547 ~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 547 VIENGHIVETGTHRELIAK 565 (578)
T ss_dssp EEETTEEEEEECHHHHHHT
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999875
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.90 E-value=2e-23 Score=175.69 Aligned_cols=86 Identities=29% Similarity=0.508 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||+|||+.++..+.+.+.++.+ |+|+|++||+++.+. .| |+|+
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~-----------d~i~ 549 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QA-----------DEIV 549 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TC-----------SEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hC-----------CEEE
Confidence 7999999999999999999999999999999999999999999864 899999999999653 34 5588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|+++..|+++++++.
T Consensus 550 ~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 550 VVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp EEETTEEEEEECHHHHHHH
T ss_pred EEECCEEEEecCHHHHHHc
Confidence 9999999999999998864
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=5.1e-24 Score=166.83 Aligned_cols=85 Identities=31% Similarity=0.408 Sum_probs=76.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRL-VEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l-~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+ .++. +|+|||++||+++++. .||+ +
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~-----------i 228 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADK-----------I 228 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSE-----------E
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCE-----------E
Confidence 69999999999999999999999999999999999999964 4553 5899999999999774 4766 8
Q ss_pred EEeeCceEEeecChhHHhh
Q psy6322 80 GLMREGVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~G~i~~~~~~~~l~~ 98 (128)
++|++|+++..|++++++.
T Consensus 229 ~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 229 LILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCeEEEeCCHHHHhh
Confidence 8999999999999998864
No 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.1e-24 Score=181.08 Aligned_cols=88 Identities=25% Similarity=0.325 Sum_probs=82.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+++|++|||||||+|||+.++..++++|+++. +.|.|||++|||++++..+||| |
T Consensus 470 GGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDr-----------v 538 (608)
T 3j16_B 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK-----------V 538 (608)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 799999999999999999999999999999999999999999986 4599999999999999999988 7
Q ss_pred EEeeC--ceEEeecChhHHhhc
Q psy6322 80 GLMRE--GVLLAEESPASLMAR 99 (128)
Q Consensus 80 ~vl~~--G~i~~~~~~~~l~~~ 99 (128)
++|++ |++++.|+|++++..
T Consensus 539 ivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 539 IVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp EECEEETTTEEECCCCEEHHHH
T ss_pred EEEeCCCCeEEecCChHHHhhh
Confidence 78987 899999999998864
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.89 E-value=1.2e-23 Score=177.36 Aligned_cols=86 Identities=28% Similarity=0.511 Sum_probs=76.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|+++||||||+|||+.++..+.+.+.++.+ |+|+|++||+++.+. .||| |+
T Consensus 486 gGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~-----------i~ 552 (595)
T 2yl4_A 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANM-----------VA 552 (595)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCE-----------EE
Confidence 7999999999999999999999999999999999999999999865 899999999999774 3665 88
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++++.
T Consensus 553 ~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 553 VLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp EEETTEEEEEECSCC----
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999998753
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.5e-24 Score=173.29 Aligned_cols=88 Identities=27% Similarity=0.354 Sum_probs=78.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|+++. .+.|+|++||+++.+ ..| |+|+
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~-~~a-----------Dri~ 224 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LEC-----------DQFL 224 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGG-TTC-----------SEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHH-HhC-----------CEEE
Confidence 699999999999999999999999999999999999999998864 589999999998743 235 5588
Q ss_pred EeeCceEEeecChhHHhhccC
Q psy6322 81 LMREGVLLAEESPASLMARRN 101 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~~ 101 (128)
+|++|+|+..|++++++..+.
T Consensus 225 vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 225 VIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp EEETTEEEEESSHHHHHHCCS
T ss_pred EEECCEEEEECCHHHHHhCCC
Confidence 999999999999999998653
No 44
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.89 E-value=3.7e-23 Score=176.39 Aligned_cols=87 Identities=31% Similarity=0.453 Sum_probs=79.5
Q ss_pred ChHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||||||+|||||+++| ++|||||||+|||+..+..++++|++++++|.|||+||||++++ ..|||
T Consensus 546 gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~---------- 614 (670)
T 3ux8_A 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADY---------- 614 (670)
T ss_dssp HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSE----------
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCE----------
Confidence 79999999999999987 49999999999999999999999999988899999999999976 34655
Q ss_pred eEEEe------eCceEEeecChhHHhhc
Q psy6322 78 IIGLM------REGVLLAEESPASLMAR 99 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~ 99 (128)
|++| ++|+|++.|+++++.+.
T Consensus 615 -i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 615 -IIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp -EEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred -EEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 8899 89999999999999764
No 45
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.89 E-value=3.7e-23 Score=176.36 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=80.9
Q ss_pred ChHhHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||||||+|||||+++|+ +|||||||+||||..+..+++.|++++++|.|||+||||++.+. .|||
T Consensus 205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~----------- 272 (670)
T 3ux8_A 205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADY----------- 272 (670)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSE-----------
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCE-----------
Confidence 799999999999999998 99999999999999999999999999888999999999999764 4666
Q ss_pred EEEe------eCceEEeecChhHHhhcc
Q psy6322 79 IGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
+++| ++|++++.|+++++....
T Consensus 273 ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 273 LIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred EEEecccccccCCEEEEecCHHHHhcCc
Confidence 7788 899999999999988653
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.88 E-value=3.5e-23 Score=173.53 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=80.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +.|.|||++|||++++..+||| +
T Consensus 404 GGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~dr-----------v 472 (538)
T 1yqt_A 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR-----------L 472 (538)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 799999999999999999999999999999999999999999987 4599999999999999999988 7
Q ss_pred EEeeC--ceEEeecChhHHhh
Q psy6322 80 GLMRE--GVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~--G~i~~~~~~~~l~~ 98 (128)
++|++ |++...|++++++.
T Consensus 473 ~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 473 MVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEEEETTTEEEECCCEEHHH
T ss_pred EEEeCCcceEeecCCHHHHHh
Confidence 78986 78888899887764
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.88 E-value=1.1e-22 Score=172.72 Aligned_cols=87 Identities=22% Similarity=0.367 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+||+||+++|++|||||||+|||+.++..+++.|+++. +.|.|||++|||++++..+||| +
T Consensus 474 GGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adr-----------v 542 (607)
T 3bk7_A 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR-----------L 542 (607)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 799999999999999999999999999999999999999999986 4699999999999999999887 7
Q ss_pred EEeeC--ceEEeecChhHHhh
Q psy6322 80 GLMRE--GVLLAEESPASLMA 98 (128)
Q Consensus 80 ~vl~~--G~i~~~~~~~~l~~ 98 (128)
++|++ |++...|++++++.
T Consensus 543 ~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 543 IVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEEEETTTEEEECCCEEHHH
T ss_pred EEEcCCcceEEecCCHHHHHh
Confidence 78986 78888899988765
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=1e-22 Score=170.85 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=75.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAHII 79 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v 79 (128)
|||||||+|||||+++|++|||||||+|||+.++..+++.|+++.+ .|.|||++|||++++..+||| |
T Consensus 388 GGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr-----------i 456 (538)
T 3ozx_A 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR-----------I 456 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE-----------E
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------E
Confidence 7999999999999999999999999999999999999999999974 599999999999999999988 7
Q ss_pred EEeeC--ceEEeecChhHH
Q psy6322 80 GLMRE--GVLLAEESPASL 96 (128)
Q Consensus 80 ~vl~~--G~i~~~~~~~~l 96 (128)
++|++ |.+...+++.++
T Consensus 457 ~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 457 IVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp EEEEEETTTEEEECCCEEH
T ss_pred EEEeCCcceeccCCChHHH
Confidence 78986 455555665544
No 49
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.87 E-value=9e-24 Score=159.03 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=65.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++|+|||++||+++++..+||+++
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 699999999999999999999999999999999999999999987668999999999999999999866
No 50
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2.4e-22 Score=177.12 Aligned_cols=88 Identities=28% Similarity=0.447 Sum_probs=80.3
Q ss_pred ChHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||||||+|||||+++| ++|||||||+|||+..+..+++.|.+++++|.|||+|||+++++.. | |
T Consensus 808 GGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-A-----------D 875 (916)
T 3pih_A 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-A-----------D 875 (916)
T ss_dssp HHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-C-----------S
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-C-----------C
Confidence 79999999999999876 7999999999999999999999999998889999999999997632 5 4
Q ss_pred eEEEe------eCceEEeecChhHHhhcc
Q psy6322 78 IIGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
+|++| ++|+|++.|++++++...
T Consensus 876 rIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 876 HIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred EEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 58899 999999999999998754
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=2.7e-22 Score=181.85 Aligned_cols=87 Identities=30% Similarity=0.554 Sum_probs=80.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++||||||||+||+.+.+.|.+.|++.. +|+|+|+++|.++.+ +.||+|+
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi------------~~aD~I~ 1286 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTV------------MNADCIA 1286 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTT------------TTCSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHH------------HhCCEEE
Confidence 699999999999999999999999999999999999999998864 589999999999954 5678899
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
||++|+|++.|+++++++..
T Consensus 1287 Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1287 VVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp EESSSSEEEEECHHHHHHCC
T ss_pred EEECCEEEEECCHHHHHhCC
Confidence 99999999999999999863
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=3.5e-22 Score=180.67 Aligned_cols=87 Identities=28% Similarity=0.510 Sum_probs=79.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+++|++|||||||+|||+.+++.+.+.+++. .+|+|+|++||+++++.. | |+|+
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~-~-----------dri~ 1240 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQN-A-----------DLIV 1240 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGS-C-----------SEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHc-C-----------CEEE
Confidence 79999999999999999999999999999999999999999885 458999999999997632 4 5588
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|++++.|+++++++..
T Consensus 1241 vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1241 VIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp EEETBEEEEEECHHHHHHSC
T ss_pred EEECCEEEEECCHHHHHhCC
Confidence 99999999999999998763
No 53
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=5.6e-22 Score=158.99 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=70.3
Q ss_pred ChHhHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhh
Q psy6322 1 GGQQRRTSLAVALL------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEAR 74 (128)
Q Consensus 1 gG~~qrv~ia~al~------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~ 74 (128)
||||||++||+||+ .+|+++||||||+|||+..+..+.+.+.++.+.|.|||++||+++. ...||+
T Consensus 282 gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~------- 353 (365)
T 3qf7_A 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR------- 353 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC-------
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE-------
Confidence 69999999999999 7999999999999999999999999999998789999999999986 455665
Q ss_pred hcceEEEeeCceEEe
Q psy6322 75 QAHIIGLMREGVLLA 89 (128)
Q Consensus 75 ~~~~v~vl~~G~i~~ 89 (128)
+++|++|+++.
T Consensus 354 ----~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 ----KLRITGGVVVN 364 (365)
T ss_dssp ----EEEEETTEEC-
T ss_pred ----EEEEECCEEEe
Confidence 88999999975
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=5.9e-22 Score=166.05 Aligned_cols=74 Identities=27% Similarity=0.414 Sum_probs=69.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+.+|++|||||||++||+..+..++++|+++.+.|.|||++|||++++..+||| |+
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr-----------i~ 229 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI-----------IH 229 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987899999999999999999988 66
Q ss_pred EeeCc
Q psy6322 81 LMREG 85 (128)
Q Consensus 81 vl~~G 85 (128)
+|++|
T Consensus 230 vl~~~ 234 (538)
T 1yqt_A 230 VVYGE 234 (538)
T ss_dssp EEEEE
T ss_pred EEcCc
Confidence 88764
No 55
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.85 E-value=1.3e-21 Score=139.79 Aligned_cols=75 Identities=25% Similarity=0.288 Sum_probs=65.7
Q ss_pred ChHhHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhh
Q psy6322 1 GGQQRRTSLA------VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEAR 74 (128)
Q Consensus 1 gG~~qrv~ia------~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~ 74 (128)
||||||++|| +|++.+|+++||||||+|||+..+..+.+.+.++.++|.|||++||++ ++..+||+
T Consensus 60 gGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~------- 131 (148)
T 1f2t_B 60 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADH------- 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSE-------
T ss_pred HHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCE-------
Confidence 6999999876 899999999999999999999999999999999876789999999998 45566665
Q ss_pred hcceEEEe--eCceE
Q psy6322 75 QAHIIGLM--REGVL 87 (128)
Q Consensus 75 ~~~~v~vl--~~G~i 87 (128)
+++| .+|..
T Consensus 132 ----ii~l~~~~g~s 142 (148)
T 1f2t_B 132 ----VIRISLENGSS 142 (148)
T ss_dssp ----EEEEEEETTEE
T ss_pred ----EEEEEcCCCeE
Confidence 7788 56654
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.85 E-value=1.5e-21 Score=165.88 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=69.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+++|++|||||||+|||+..+..+.+.|+++.++|.|||++|||++++..+||| |+
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adr-----------i~ 299 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDV-----------IH 299 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCE-----------EE
Confidence 7999999999999999999999999999999999999999999987799999999999999988887 66
Q ss_pred EeeCc
Q psy6322 81 LMREG 85 (128)
Q Consensus 81 vl~~G 85 (128)
+|+++
T Consensus 300 vl~~~ 304 (607)
T 3bk7_A 300 VVYGE 304 (607)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 88764
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.85 E-value=3.4e-21 Score=174.67 Aligned_cols=87 Identities=32% Similarity=0.512 Sum_probs=80.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++||||++++|+++|||||||+||+.+.+.+.+.|.++. +|+|+|++||.++.+ +.||+|+
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i------------~~aD~Ii 623 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTI------------RNADLII 623 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTT------------TTCSEEE
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHH------------HhCCEEE
Confidence 799999999999999999999999999999999999999999875 589999999999943 5678899
Q ss_pred EeeCceEEeecChhHHhhcc
Q psy6322 81 LMREGVLLAEESPASLMARR 100 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~~ 100 (128)
+|++|+|++.|+.+++++..
T Consensus 624 vl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 624 SCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp EEETTEEEEEECHHHHHTTT
T ss_pred EeeCCeeeccCCHHHHHHhh
Confidence 99999999999999998753
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=3.7e-21 Score=170.43 Aligned_cols=84 Identities=29% Similarity=0.280 Sum_probs=78.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+ .|.|||++||+++++..+||| ++
T Consensus 551 GGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adr-----------ii 616 (986)
T 2iw3_A 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEY-----------II 616 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCE-----------EE
Confidence 7999999999999999999999999999999999999999988 589999999999999999887 77
Q ss_pred EeeCceEE-eecChhHHhh
Q psy6322 81 LMREGVLL-AEESPASLMA 98 (128)
Q Consensus 81 vl~~G~i~-~~~~~~~l~~ 98 (128)
+|++|+++ +.|+++++..
T Consensus 617 ~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 617 NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEETTEEEEEESCHHHHHH
T ss_pred EEECCeeecCCCCHHHHHh
Confidence 99999997 6899888764
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=1.8e-21 Score=170.34 Aligned_cols=88 Identities=28% Similarity=0.463 Sum_probs=81.3
Q ss_pred ChHhHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHN---PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~---p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
||||||++||++|+.+ |++|||||||+|||+..+..+++.|.++.+.|.|||++|||++++ ..|||
T Consensus 733 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDr---------- 801 (842)
T 2vf7_A 733 GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDW---------- 801 (842)
T ss_dssp HHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSE----------
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCE----------
Confidence 7999999999999996 799999999999999999999999999988899999999999988 56766
Q ss_pred eEEEe------eCceEEeecChhHHhhcc
Q psy6322 78 IIGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
|++| ++|++++.|+++++....
T Consensus 802 -ii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 802 -VLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp -EEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred -EEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 8899 799999999999988653
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=3.8e-21 Score=169.51 Aligned_cols=88 Identities=26% Similarity=0.414 Sum_probs=80.6
Q ss_pred ChHhHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||||||+||+||+.+|+ +|||||||+||||..+..+.+.|+++++.|.|||++|||++.+.. ||+
T Consensus 467 GGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~----------- 534 (916)
T 3pih_A 467 GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADH----------- 534 (916)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSE-----------
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCE-----------
Confidence 799999999999999887 999999999999999999999999998789999999999987643 555
Q ss_pred EEEe------eCceEEeecChhHHhhcc
Q psy6322 79 IGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
|++| ++|++++.|++++++...
T Consensus 535 ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 535 IIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 8899 999999999999998653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=2.1e-21 Score=162.86 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=69.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+.+|++|||||||+|||+..+..+++.|+++.+ |+|||++||+++++..+||+ |.
T Consensus 141 gGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~-----------i~ 208 (538)
T 3ozx_A 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDL-----------IH 208 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999965 99999999999999999887 66
Q ss_pred EeeCce
Q psy6322 81 LMREGV 86 (128)
Q Consensus 81 vl~~G~ 86 (128)
+|++|.
T Consensus 209 vl~~~~ 214 (538)
T 3ozx_A 209 IIYGES 214 (538)
T ss_dssp EEEEET
T ss_pred EecCCc
Confidence 888654
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.7e-21 Score=164.36 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=71.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||||+||+||+.+|++|||||||+|||+..+..+++.++++.++|+|||++||+++++..+||| |+
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr-----------v~ 292 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF-----------VC 292 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE-----------EE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE-----------EE
Confidence 6999999999999999999999999999999999999999999987899999999999999999887 77
Q ss_pred EeeCceEE
Q psy6322 81 LMREGVLL 88 (128)
Q Consensus 81 vl~~G~i~ 88 (128)
+|++|...
T Consensus 293 vl~~~~~~ 300 (608)
T 3j16_B 293 IIYGVPSV 300 (608)
T ss_dssp EEESCTTT
T ss_pred EEeCCccc
Confidence 88876543
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=2e-21 Score=175.83 Aligned_cols=86 Identities=30% Similarity=0.512 Sum_probs=78.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||++||+.+...+.+.+.+.. +|+|+|++||+++.+.. | |+|+
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~-~-----------d~i~ 595 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN-A-----------DVIA 595 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT-C-----------SEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-C-----------CEEE
Confidence 799999999999999999999999999999999999999998864 58999999999997743 4 5588
Q ss_pred EeeCceEEeecChhHHhhc
Q psy6322 81 LMREGVLLAEESPASLMAR 99 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l~~~ 99 (128)
+|++|++++.|+++++++.
T Consensus 596 vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 596 GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp ECSSSCCCCEECHHHHHHT
T ss_pred EEECCEEEEECCHHHHHhC
Confidence 9999999999999999865
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=5.5e-21 Score=168.84 Aligned_cols=88 Identities=31% Similarity=0.458 Sum_probs=80.1
Q ss_pred ChHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||||||+||++|+.+| +++||||||+|||+..+..+++.|.++.++|.|||++||+++++ ..|||
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDr---------- 916 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADY---------- 916 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSE----------
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCE----------
Confidence 69999999999999875 99999999999999999999999999988899999999999976 35655
Q ss_pred eEEEe------eCceEEeecChhHHhhcc
Q psy6322 78 IIGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
|++| ++|++++.|+++++....
T Consensus 917 -IivL~p~gG~~~G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 917 -IIDLGPEGGDRGGQIVAVGTPEEVAEVK 944 (972)
T ss_dssp -EEEECSSSTTSCCSEEEEESHHHHHTCT
T ss_pred -EEEEcCCCCCCCCEEEEecCHHHHHhCc
Confidence 8899 799999999999998643
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=9.6e-21 Score=167.68 Aligned_cols=88 Identities=26% Similarity=0.405 Sum_probs=80.2
Q ss_pred ChHhHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 1 GGQQRRTSLAVALLHNP---DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p---~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
|||||||+||++|+.+| ++|||||||+|||+..+..+++.|.++.+.|.|||++|||++++ ..||+
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDr---------- 934 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDW---------- 934 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSE----------
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCE----------
Confidence 69999999999999875 99999999999999999999999999988899999999999976 35655
Q ss_pred eEEEe------eCceEEeecChhHHhhcc
Q psy6322 78 IIGLM------REGVLLAEESPASLMARR 100 (128)
Q Consensus 78 ~v~vl------~~G~i~~~~~~~~l~~~~ 100 (128)
|++| ++|++++.|+++++....
T Consensus 935 -IivL~p~gg~~~G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 935 -IIDLGPEGGAGGGTVVAQGTPEDVAAVP 962 (993)
T ss_dssp -EEEEESSSTTSCSEEEEEECHHHHHHCT
T ss_pred -EEEECCCcCCCCCEEEEecCHHHHHhCC
Confidence 8899 799999999999988653
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=4.1e-20 Score=163.67 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=80.2
Q ss_pred ChHhHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHN--PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~--p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+||++||++|..+ |++|||||||+||||.....+++.|+++++.|.|||+|||+++++. .||+
T Consensus 524 GGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADr----------- 591 (993)
T 2ygr_A 524 GGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADW----------- 591 (993)
T ss_dssp HHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSE-----------
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCE-----------
Confidence 7999999999999999 5999999999999999999999999999988999999999999764 4655
Q ss_pred EEEe------eCceEEeecChhHHhhc
Q psy6322 79 IGLM------REGVLLAEESPASLMAR 99 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~~ 99 (128)
|++| ++|++++.|+++++...
T Consensus 592 Ii~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 592 IVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp EEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred EEEecCccccCCCEEEEeeCHHHhhhh
Confidence 8899 79999999999998864
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=7.9e-21 Score=168.32 Aligned_cols=78 Identities=29% Similarity=0.391 Sum_probs=69.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++ |.|||++|||++++..+||| ++
T Consensus 904 GGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~Dr-----------Vi 969 (986)
T 2iw3_A 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEE-----------VW 969 (986)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCE-----------EE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCE-----------EE
Confidence 79999999999999999999999999999999999999888765 67999999999999888877 77
Q ss_pred EeeCceEEeecC
Q psy6322 81 LMREGVLLAEES 92 (128)
Q Consensus 81 vl~~G~i~~~~~ 92 (128)
+|++|+++..|+
T Consensus 970 vL~~G~Iv~~G~ 981 (986)
T 2iw3_A 970 AVKDGRMTPSGH 981 (986)
T ss_dssp CCBTTBCCC---
T ss_pred EEECCEEEEeCC
Confidence 999999988764
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=3.1e-20 Score=164.14 Aligned_cols=87 Identities=24% Similarity=0.383 Sum_probs=79.6
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+||++||++|..+| ++|||||||+||||.....+++.|+++++.|.|||+|||+++++. .|||
T Consensus 507 GGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADr----------- 574 (972)
T 2r6f_A 507 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADY----------- 574 (972)
T ss_dssp HHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSE-----------
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCE-----------
Confidence 79999999999999985 999999999999999999999999999888999999999999764 4655
Q ss_pred EEEe------eCceEEeecChhHHhhc
Q psy6322 79 IGLM------REGVLLAEESPASLMAR 99 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~~ 99 (128)
|++| ++|++++.|+++++...
T Consensus 575 Ii~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 575 LIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 8899 89999999999998763
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.81 E-value=7.1e-20 Score=146.74 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=70.5
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. +|.|||+|||+++.+ ..||+
T Consensus 298 gGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~----------- 364 (415)
T 4aby_A 298 GGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHH----------- 364 (415)
T ss_dssp HHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSE-----------
T ss_pred HhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCe-----------
Confidence 69999999999999999 9999999999999999999999999997 689999999999754 45655
Q ss_pred EEEe----eCceEEeec
Q psy6322 79 IGLM----REGVLLAEE 91 (128)
Q Consensus 79 v~vl----~~G~i~~~~ 91 (128)
+++| ++|+++...
T Consensus 365 i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeccCCceEEEE
Confidence 8899 999988653
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=1.1e-19 Score=159.19 Aligned_cols=87 Identities=23% Similarity=0.390 Sum_probs=79.4
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+|||+||++|+.+| +++||||||+|||+.....+++.++++++.|.|||++||+++.+ ..||+
T Consensus 382 GGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l-~~aD~----------- 449 (842)
T 2vf7_A 382 PGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVI-RRADW----------- 449 (842)
T ss_dssp HHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH-TTCSE-----------
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCE-----------
Confidence 69999999999999999 59999999999999999999999999988899999999999855 34554
Q ss_pred EEEe------eCceEEeecChhHHhhc
Q psy6322 79 IGLM------REGVLLAEESPASLMAR 99 (128)
Q Consensus 79 v~vl------~~G~i~~~~~~~~l~~~ 99 (128)
|++| ++|++++.|+++++...
T Consensus 450 ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 450 LVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred EEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 8899 89999999999998764
No 71
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=1.6e-18 Score=143.94 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=65.6
Q ss_pred ChHhHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcce
Q psy6322 1 GGQQRRTSLAVALLHNP--DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHI 78 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~ 78 (128)
|||+||++||++++.+| ++|||||||+|||+..+..+.+.|.++.+ |.|||++||+++.+. .||+
T Consensus 400 gG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~----------- 466 (517)
T 4ad8_A 400 GGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHH----------- 466 (517)
T ss_dssp SSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSE-----------
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCE-----------
Confidence 79999999999999999 99999999999999999999999999977 899999999998664 4666
Q ss_pred EEEeeCc
Q psy6322 79 IGLMREG 85 (128)
Q Consensus 79 v~vl~~G 85 (128)
+++|++|
T Consensus 467 ~~~~~~~ 473 (517)
T 4ad8_A 467 HYKVEKQ 473 (517)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 7789554
No 72
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=2.4e-18 Score=136.05 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=60.0
Q ss_pred ChHhH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQR------RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~q------rv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||||| |+++|++++.+|++|||||||+|||+..+..+.+.|.++.+.|.|||++||+.+ +...||+++
T Consensus 251 ~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~~~ 324 (339)
T 3qkt_A 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVI 324 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCEEE
Confidence 69999 677888888999999999999999999999999999998777899999999955 566777744
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.72 E-value=2.9e-19 Score=128.69 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=58.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV----------------LSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~----------------~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
+|||||++||+|++.+|++++|||||+|||+. .+..+.+.+.++.++|.|+|++||+++++.++
T Consensus 86 ~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 86 SARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 58999999999999999999999999999999 55888999988876799999999999988654
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.72 E-value=4.9e-18 Score=133.34 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=67.0
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhc
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQA 76 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~ 76 (128)
+|||||++||++|+ .+|+++||||||++||+..+..+.+.+.++. +|.|+|++||+++ +..+||++.
T Consensus 222 ~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~-~~~~~d~~~------- 292 (322)
T 1e69_A 222 GGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI-VMEAADLLH------- 292 (322)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT-GGGGCSEEE-------
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH-HHhhCceEE-------
Confidence 59999999999997 5889999999999999999999999999984 5899999999964 556676621
Q ss_pred ceEEEeeCceEE-eecChhH
Q psy6322 77 HIIGLMREGVLL-AEESPAS 95 (128)
Q Consensus 77 ~~v~vl~~G~i~-~~~~~~~ 95 (128)
.++|.+|... ...+.++
T Consensus 293 --~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 --GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp --EEEESSSCEEEEECCC--
T ss_pred --EEEEeCCEEEEEEEEcch
Confidence 2577777654 3444443
No 75
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=1.8e-17 Score=121.09 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=57.8
Q ss_pred ChHhHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLH----NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~----~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
||||||++||++|+. .|+++||||||+|||+.++..+.+.|.++.+ +.++|++||+... ...||+++
T Consensus 67 gGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad~i~ 137 (173)
T 3kta_B 67 GGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANADKII 137 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCSEEE
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCCEEE
Confidence 799999999999985 4699999999999999999999999999864 5789999999764 45677744
No 76
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.70 E-value=8.3e-18 Score=135.10 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred ChHhHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 1 GGQQRRTSLAVALL---------HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 1 gG~~qrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
||||||++||++|+ .+|++|||||||++||+..+..+++.+.++. .|+|++|| ++. .||+
T Consensus 268 ~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~---~~~~---- 336 (359)
T 2o5v_A 268 RGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP---GAAL---- 336 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT---TCSE----
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc---cCCE----
Confidence 69999999999999 8999999999999999999999999998874 79999999 443 5554
Q ss_pred hhhhcceEEEeeCceEEeecChhHH
Q psy6322 72 EARQAHIIGLMREGVLLAEESPASL 96 (128)
Q Consensus 72 ~~~~~~~v~vl~~G~i~~~~~~~~l 96 (128)
+++|++|+++..|+++++
T Consensus 337 -------i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 -------TLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -------EEEEETTEEEECCCTTTS
T ss_pred -------EEEEECCEEEecCCHHHH
Confidence 889999999999998765
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-17 Score=137.23 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=69.9
Q ss_pred ChHhHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH------HHHHHHhH
Q psy6322 1 GGQQRRTSLAVA--LLHNPDL----LILDE-PTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE------EARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~a--l~~~p~l----llLDE-Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~------~~~~~~d~ 67 (128)
||||||+++|+| |+.+|++ +|||| ||+|||+. ...+.++++++ +.|++++||+.+ ++..+|||
T Consensus 238 gGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 238 LECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhccc
Confidence 699999999999 9999999 99999 99999999 55555555543 789999999987 78888887
Q ss_pred HHhhhhhhcceEEEee-CceEEeecChhHHh
Q psy6322 68 LYCEEARQAHIIGLMR-EGVLLAEESPASLM 97 (128)
Q Consensus 68 v~~~~~~~~~~v~vl~-~G~i~~~~~~~~l~ 97 (128)
+ ... .|++|+ +|+++ .|+++++.
T Consensus 314 ~-----~~~-~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 314 L-----GNN-NIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp H-----CGG-GEEEECCCTTCC-CCCHHHHH
T ss_pred c-----cCC-EEEEEeCCCcEE-ECCHHHHh
Confidence 0 000 155899 99999 89987764
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.63 E-value=3.4e-16 Score=114.16 Aligned_cols=64 Identities=8% Similarity=-0.005 Sum_probs=57.4
Q ss_pred ChHhHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe---CCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVA-----LLHNPDLLILDE--PTVGLDPVLSKSIWDRLVEMTENGKTVMITT---HYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~a-----l~~~p~lllLDE--Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s---H~l~~~~~~~d~ 67 (128)
||||||++||+| ++.+|+++|||| ||+++|+..+..+.+.+.+ .+.|+|++| |+++++..+|+|
T Consensus 79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc
Confidence 599999999996 999999999999 9999999999999888865 467788887 599999999986
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.58 E-value=4.6e-17 Score=121.67 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=47.7
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL 63 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~ 63 (128)
|||||++|||||+.+|++|||||||+| ++..+++.|.++ ++|.||| +|||+++++.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 899999999999999999999999999 888999999998 6689999 9999997653
No 80
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.58 E-value=2e-15 Score=120.58 Aligned_cols=65 Identities=31% Similarity=0.362 Sum_probs=56.5
Q ss_pred ChHhHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRT------SLAVALLHN-PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv------~ia~al~~~-p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
|||+||+ ++|++++.+ |+++||||||+|||+..+..+.+.+.++. .+.+||++||+++ +..+||+
T Consensus 283 ~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCCE
Confidence 6999988 567888999 99999999999999999999999999864 4578999999986 5566665
No 81
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.57 E-value=3.4e-15 Score=121.09 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=59.8
Q ss_pred ChHhHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALL----HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~----~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
|||||+++||++|+ .+|+++|||||+++||+..+..+.+.+.++...+.++|++||+... ...||+++
T Consensus 336 ~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~ 407 (430)
T 1w1w_A 336 GGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV 407 (430)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred cchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence 69999999999999 5899999999999999999999999999986558999999999654 45566643
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.41 E-value=2.9e-14 Score=118.50 Aligned_cols=74 Identities=9% Similarity=-0.049 Sum_probs=66.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHCCcEEEEEeCCH----------HHHHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV-----LSKSIWDRLVEMTENGKTVMITTHYI----------EEARLLC 65 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~-----~~~~i~~~l~~~~~~g~tvi~~sH~l----------~~~~~~~ 65 (128)
|||+||+.+|+++..+|+++|+| ||+|||+. .+..+.++++.+++.|.|+|++||+. ..++.+|
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~ 434 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTIT 434 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTC
T ss_pred HHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceee
Confidence 58999999999999999999999 99999999 99999999999988899999999998 6666666
Q ss_pred hHHHhhhhhhcceEEEeeCce
Q psy6322 66 AKLYCEEARQAHIIGLMREGV 86 (128)
Q Consensus 66 d~v~~~~~~~~~~v~vl~~G~ 86 (128)
|+ |++|++|+
T Consensus 435 D~-----------vi~L~~ge 444 (525)
T 1tf7_A 435 DT-----------IILLQYVE 444 (525)
T ss_dssp SE-----------EEEEEEEE
T ss_pred eE-----------EEEEEEEE
Confidence 65 77788776
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.36 E-value=5e-13 Score=118.23 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=66.8
Q ss_pred hHhHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHHhhhhhhcc
Q psy6322 2 GQQRRTSLAVAL--LHNPDLLILDEPTVGLDPVLSKSI-WDRLVEMTE-NGKTVMITTHYIEEARLLCAKLYCEEARQAH 77 (128)
Q Consensus 2 G~~qrv~ia~al--~~~p~lllLDEPt~gLD~~~~~~i-~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~ 77 (128)
||+++..+++++ +.+|+++||||||+|+|+.....+ +.++..+.+ .|.|+|++||+.+ +..+||+
T Consensus 725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e-l~~lad~---------- 793 (934)
T 3thx_A 725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE-LTALANQ---------- 793 (934)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG-GGGGGGT----------
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH-HHHHhcc----------
Confidence 566677777777 999999999999999999988887 777777776 4999999999966 4467877
Q ss_pred eEEEeeCceEEeecChhHH
Q psy6322 78 IIGLMREGVLLAEESPASL 96 (128)
Q Consensus 78 ~v~vl~~G~i~~~~~~~~l 96 (128)
+..+.+|++...++++++
T Consensus 794 -~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 794 -IPTVNNLHVTALTTEETL 811 (934)
T ss_dssp -CTTEEEEEEEEEEETTEE
T ss_pred -cceeEeeEEEEEecCCcE
Confidence 446888888877666554
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.36 E-value=4.8e-14 Score=115.12 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=61.6
Q ss_pred hHhHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HC----CcEEEEEeCCHHH--
Q psy6322 2 GQQRRTSLAVALLH----------NPDLLILDEPTVGLDPVLSKSIWDRLVEMT-----EN----GKTVMITTHYIEE-- 60 (128)
Q Consensus 2 G~~qrv~ia~al~~----------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-----~~----g~tvi~~sH~l~~-- 60 (128)
||+||+.||++|++ +|++++|||||+|||+..+..+++.++++. +. ..+|+++||+++.
T Consensus 160 ~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~ 239 (413)
T 1tq4_A 160 FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239 (413)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTT
T ss_pred ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccC
Confidence 39999999999999 999999999999999999999999999984 22 3678999999998
Q ss_pred HHHHHhHHH
Q psy6322 61 ARLLCAKLY 69 (128)
Q Consensus 61 ~~~~~d~v~ 69 (128)
++.+||++.
T Consensus 240 ~e~L~d~I~ 248 (413)
T 1tq4_A 240 FPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999965
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.28 E-value=1.8e-12 Score=102.63 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=52.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
|||+||++|++||..+|++++||||++. .+++.+..+...+.|+|+++|+++ +...|||++
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~ 285 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLA 285 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHH
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhhe
Confidence 6999999999999999999999999982 356677776544458999999998 888999966
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.27 E-value=1.1e-11 Score=110.52 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=59.7
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLS-KSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~-~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
++.++++++++++.+|+++|||||++|+|+... ..+++++.++.++ |.++|++||+++.+..+||++.
T Consensus 854 ~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 854 VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA 923 (1022)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcce
Confidence 345569999999999999999999999999874 5588999998876 9999999999999998888743
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.20 E-value=2.8e-11 Score=106.98 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=56.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHH-CCcEEEEEeCCHHHHHHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIW-DRLVEMTE-NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~-~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~ 67 (128)
+||+|++.++++ +.+|+++|||||++|+|+.....+. .++..+.+ .|.|+|++||+++.+ .++|+
T Consensus 738 ~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 738 EELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 478999999988 8999999999999999999998886 77777765 599999999998754 67776
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.18 E-value=2.7e-11 Score=93.06 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHC-CcEEEEEeCCH
Q psy6322 4 QRRTSLAVALLHNPDLLILDEPTV---G---LDP-VLSKSIWDRLVEMTEN-GKTVMITTHYI 58 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEPt~---g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~sH~l 58 (128)
+|++. ++++..+|+++|+||||+ + +|+ .....+.+.|++++++ |.|||++||+.
T Consensus 136 ~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 136 LAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 67777 889999999999999999 5 455 6667899999998754 99999999995
No 89
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.16 E-value=1.9e-12 Score=95.02 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 12 ALLHNPDLLILDEPTVGL----DPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 12 al~~~p~lllLDEPt~gL----D~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
+|+.+|++++|||||+|+ |+..+..+++.+.++.. .|.|++++|||++++.++|||++
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~ 199 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 199 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHH
Confidence 678899999999999998 78899999999999874 58999999999999999999976
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.15 E-value=1.2e-11 Score=91.62 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=41.1
Q ss_pred HhcCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 13 LLHNPDLLILDEPTVGLD-----PVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD-----~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
-..+|+++++||||+++| +..+..+.+++..+++.|+|||++||+++++
T Consensus 132 ~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 358999999999999997 6777779999999887799999999999988
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.12 E-value=6.7e-11 Score=86.20 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=56.0
Q ss_pred hHhHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCcEEEEEeCCH--------HHHHHHHhHH
Q psy6322 2 GQQRRTSLAVALLHNPD--LLILDEPTVGL--DPVLSKSIWDRLVEMT-ENGKTVMITTHYI--------EEARLLCAKL 68 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~--lllLDEPt~gL--D~~~~~~i~~~l~~~~-~~g~tvi~~sH~l--------~~~~~~~d~v 68 (128)
++.++...+.+...+|+ ++++||||+++ |+..+..+++.+.++. +.|.|||++||+. ..++.+||+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~- 185 (235)
T 2w0m_A 107 EELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADG- 185 (235)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSE-
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeE-
Confidence 45556666666678999 99999999877 9999999999999986 4599999999999 346666665
Q ss_pred HhhhhhhcceEEEeeCc
Q psy6322 69 YCEEARQAHIIGLMREG 85 (128)
Q Consensus 69 ~~~~~~~~~~v~vl~~G 85 (128)
+++|+..
T Consensus 186 ----------vi~l~~~ 192 (235)
T 2w0m_A 186 ----------IIRFRRM 192 (235)
T ss_dssp ----------EEEEEEE
T ss_pred ----------EEEEEEE
Confidence 6677754
No 92
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.99 E-value=2.7e-10 Score=99.43 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 5 RRTSLAVALLHNPDLLILDEPTVGLDPVLSKSI-WDRLVEMTE-NGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 5 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i-~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
++++.+...+.+|+++|||||++|+|+.....+ ++++..+.+ .|.++|++||+++.+ .+||++.
T Consensus 675 ~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~ 740 (800)
T 1wb9_A 675 TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKME 740 (800)
T ss_dssp HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHST
T ss_pred HHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhh
Confidence 445555567999999999999999998877775 788888877 499999999999764 5888843
No 93
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.90 E-value=2.2e-09 Score=77.90 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHHC-CcEEEEEeCCHH
Q psy6322 3 QQRRTSLAVALLHN-PDLLILDEPTVGLDPVL--------SKSIWDRLVEMTEN-GKTVMITTHYIE 59 (128)
Q Consensus 3 ~~qrv~ia~al~~~-p~lllLDEPt~gLD~~~--------~~~i~~~l~~~~~~-g~tvi~~sH~l~ 59 (128)
+++++..+++++.+ |+++++|||++++|+.. ...+.+.|.++.++ |.|||+++|...
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 35788888899986 99999999999999743 23455557777544 899999999875
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.86 E-value=3e-09 Score=88.32 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH---------HHHHhHHHh
Q psy6322 6 RTSLAVALL-HNPDLLILDEPTV-----GLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA---------RLLCAKLYC 70 (128)
Q Consensus 6 rv~ia~al~-~~p~lllLDEPt~-----gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~---------~~~~d~v~~ 70 (128)
.-.+..+|. .+|++++|||||+ ++|+..+..++++++++++.|.|||++||+++++ +.+||+
T Consensus 127 ~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~--- 203 (525)
T 1tf7_A 127 IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDN--- 203 (525)
T ss_dssp HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSE---
T ss_pred HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeE---
Confidence 334555664 7999999999997 5699999999999999987799999999999974 445665
Q ss_pred hhhhhcceEEEeeC
Q psy6322 71 EEARQAHIIGLMRE 84 (128)
Q Consensus 71 ~~~~~~~~v~vl~~ 84 (128)
|++|++
T Consensus 204 --------vi~L~~ 209 (525)
T 1tf7_A 204 --------VVILRN 209 (525)
T ss_dssp --------EEEEEE
T ss_pred --------EEEEEE
Confidence 778877
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.86 E-value=7.3e-10 Score=80.88 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=46.7
Q ss_pred HHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHH-CCcEEEEEeCCHHH----H
Q psy6322 6 RTSLAVALLH-------NPDLLILDEPTVGLDPV-------L-----SKSIWDRLVEMTE-NGKTVMITTHYIEE----A 61 (128)
Q Consensus 6 rv~ia~al~~-------~p~lllLDEPt~gLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~sH~l~~----~ 61 (128)
.+..+..++. +|+++++|||++++|+. . ...+.+.+.++.+ .|.|||++||.+++ +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~ 187 (231)
T 4a74_A 108 LVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHIL 187 (231)
T ss_dssp HHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhh
Confidence 3444555554 99999999999999984 2 2367777777754 49999999996665 5
Q ss_pred HHHHhHHHhhhhhhcceEEEeeCc
Q psy6322 62 RLLCAKLYCEEARQAHIIGLMREG 85 (128)
Q Consensus 62 ~~~~d~v~~~~~~~~~~v~vl~~G 85 (128)
+.+||+ +++|++|
T Consensus 188 ~~~~d~-----------~l~l~~~ 200 (231)
T 4a74_A 188 AHSATL-----------RVYLRKG 200 (231)
T ss_dssp --CCSE-----------EEEEEEC
T ss_pred HhhceE-----------EEEEEec
Confidence 555554 6677765
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.85 E-value=6.7e-09 Score=79.58 Aligned_cols=60 Identities=23% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhh
Q psy6322 5 RRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEE 72 (128)
Q Consensus 5 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~ 72 (128)
-+++|+++|..+|+++++|||+ |+.....+ ++. ...|.+|++++|+.+ +...|||++++.
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 3789999999999999999999 98876543 333 356999999999987 778999987653
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.84 E-value=4.3e-10 Score=89.68 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=65.4
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEeCCHHHHHHHHhHHHhhhh
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE--NGK-----TVMITTHYIEEARLLCAKLYCEEA 73 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~--~g~-----tvi~~sH~l~~~~~~~d~v~~~~~ 73 (128)
+|| |++++| +.+|++ |+|+||.....+.+++.++.+ .|. ||+++|||++ +.+||++.
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~---- 237 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVR---- 237 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHH----
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheE----
Confidence 477 899998 688887 999999999999999999864 477 9999999999 78999955
Q ss_pred hhcceEEEeeCceEEeecChhHHhh
Q psy6322 74 RQAHIIGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 74 ~~~~~v~vl~~G~i~~~~~~~~l~~ 98 (128)
+|.+|+|+.+++++++..
T Consensus 238 -------~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 238 -------SILDGHIVLTRELAEENH 255 (347)
T ss_dssp -------HHCSEEEEBCHHHHTTTC
T ss_pred -------EeeCcEEEEeCCHHHcCC
Confidence 799999999998887653
No 98
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.84 E-value=1.4e-09 Score=85.14 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 4 QRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 4 ~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||++||||++.+|+ +|+|| ||+|||+..+. +++. ..|.|+|++|| +++..+.+.-+-+ .......|.
T Consensus 207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiTh-lD~~~~~g~~l~~-~~~~~~pi~ 277 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK-LDGSARGGCVVSV-VEELGIPVK 277 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEEC-CSSCSCTHHHHHH-HHHHCCCEE
T ss_pred HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeC-CCCCCccChheeh-HHHHCCCEE
Confidence 799999999999999 99999 99999988652 4444 35899999999 3442222221110 112345678
Q ss_pred EeeCceEE
Q psy6322 81 LMREGVLL 88 (128)
Q Consensus 81 vl~~G~i~ 88 (128)
++..|+.+
T Consensus 278 ~i~~Ge~~ 285 (302)
T 3b9q_A 278 FIGVGEAV 285 (302)
T ss_dssp EEECSSSG
T ss_pred EEeCCCCh
Confidence 88888653
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.83 E-value=2.7e-09 Score=92.82 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=49.5
Q ss_pred hHhHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 2 GQQRRTSLAVAL--LHNPDLLILDEP---TVGLDPVLS-KSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 2 G~~qrv~ia~al--~~~p~lllLDEP---t~gLD~~~~-~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
||++++.+++++ +.+|+++||||| |+++|+.+. ..+.+.+.+ .|.|+|++||+.+.+
T Consensus 639 ~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 639 FMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELT 701 (765)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHH
Confidence 689999999999 999999999999 999998876 457777665 589999999998765
No 100
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.78 E-value=8.6e-10 Score=90.40 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=66.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----EEEEEeCCHHHHHHHHhHHHhh
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE---N-GK-----TVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
+|| ||+++| +.+|++ |+|||+.....+.+++.++.+ + |. ||+++|||++ ..+||+++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~-- 326 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSAR-- 326 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHH--
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEE--
Confidence 477 999998 899988 999999999999999999865 3 64 9999999999 78999955
Q ss_pred hhhhcceEEEeeCceEEeecChhHHhh
Q psy6322 72 EARQAHIIGLMREGVLLAEESPASLMA 98 (128)
Q Consensus 72 ~~~~~~~v~vl~~G~i~~~~~~~~l~~ 98 (128)
+|.+|+++.+++++++..
T Consensus 327 ---------~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 327 ---------AILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp ---------HHSSEEEEECHHHHHTTC
T ss_pred ---------EEeCcEEEEeCCHHHccC
Confidence 799999999999888764
No 101
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.73 E-value=7.6e-09 Score=82.99 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 4 QRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 4 ~qrv~ia~al~~~p~--lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+||++|||+++.+|+ +|+|| ||+|||+..+. .++. ..|.|+|++|| ++...+...-+.+ .......|.
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiTh-lD~~~~gG~~lsi-~~~~~~pI~ 334 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK-LDGSARGGCVVSV-VEELGIPVK 334 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEES-CTTCSCTHHHHHH-HHHHCCCEE
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEec-CcccccccHHHHH-HHHhCCCEE
Confidence 699999999999999 99999 99999988653 3444 35899999999 3433333222111 112244577
Q ss_pred EeeCceE
Q psy6322 81 LMREGVL 87 (128)
Q Consensus 81 vl~~G~i 87 (128)
++..|..
T Consensus 335 ~ig~Ge~ 341 (359)
T 2og2_A 335 FIGVGEA 341 (359)
T ss_dssp EEECSSS
T ss_pred EEeCCCC
Confidence 8888765
No 102
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.72 E-value=8.1e-09 Score=78.70 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=43.7
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHH-HCCcEEEEEeCCHHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTV--GLDPVLS---KSIWDRLVEMT-ENGKTVMITTHYIEEAR 62 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~--gLD~~~~---~~i~~~l~~~~-~~g~tvi~~sH~l~~~~ 62 (128)
|++|+ +++++.+|+++++|||++ ++|+... ..+.+.|.++. +.|.|||+++|+.....
T Consensus 122 g~~~~---i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 122 EWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHH---HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 55454 468889999999999999 9998544 77888888886 45999999999998664
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.71 E-value=7.8e-09 Score=82.14 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=46.9
Q ss_pred hHhHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHH-CCcEEEEEeCCHHHH
Q psy6322 2 GQQRRTSLAVALL-------HNPDLLILDEPTVGLDPVL------------SKSIWDRLVEMTE-NGKTVMITTHYIEEA 61 (128)
Q Consensus 2 G~~qrv~ia~al~-------~~p~lllLDEPt~gLD~~~------------~~~i~~~l~~~~~-~g~tvi~~sH~l~~~ 61 (128)
+++|++.++++++ .+|+++|+||||+++|+.. ...+...|.++.+ .|.|||+++|.....
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 5788999999999 6899999999999999852 3455666666654 599999999998766
Q ss_pred HHHH
Q psy6322 62 RLLC 65 (128)
Q Consensus 62 ~~~~ 65 (128)
...+
T Consensus 290 ~~~~ 293 (349)
T 1pzn_A 290 DAFF 293 (349)
T ss_dssp ----
T ss_pred cccc
Confidence 5433
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.71 E-value=8.9e-11 Score=92.43 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=50.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
|||||| |||++.+|++|| |++||+.++..+.. .||+++.+ +.||+|
T Consensus 203 gGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~~------------~~aD~i- 248 (305)
T 2v9p_A 203 IDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQTF------------RFEQPC- 248 (305)
T ss_dssp CCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEEE------------ECCCCC-
T ss_pred HHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHHH------------HhCCEE-
Confidence 799999 999999999999 99999999888862 18887732 346669
Q ss_pred EeeCceEEeecChhHH
Q psy6322 81 LMREGVLLAEESPASL 96 (128)
Q Consensus 81 vl~~G~i~~~~~~~~l 96 (128)
+|++|+++..|+++++
T Consensus 249 vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 249 TDESGEQPFNITDADW 264 (305)
T ss_dssp CCC---CCCCCCHHHH
T ss_pred EEeCCEEEEeCCHHHH
Confidence 9999999999999887
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.68 E-value=3.7e-08 Score=78.70 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 8 SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
+|++||.++|+++++|||+ |+... +.+.+....|.+|++++|+.+.+ ..+||++.+
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETI----RLALTAAETGHLVFGTLHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHT
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHHhcCCEEEEEEccChHH-HHHHHHhhh
Confidence 7999999999999999999 65553 33344456799999999999977 789998865
No 106
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.67 E-value=1.9e-10 Score=85.47 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=61.0
Q ss_pred ChHhHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-------CCcEEEEEeCCHHHHHHHHhHH
Q psy6322 1 GGQQRRTSL-----AVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-------NGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~i-----a~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-------~g~tvi~~sH~l~~~~~~~d~v 68 (128)
|||+||+++ +++++..|++++||||++++|......+.+.+.+... ...+.|+++|+++++...++++
T Consensus 125 ggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 125 GVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 699999999 8999999999999999999999888888888876532 4677899999999999999986
Q ss_pred H
Q psy6322 69 Y 69 (128)
Q Consensus 69 ~ 69 (128)
+
T Consensus 205 i 205 (218)
T 1z6g_A 205 L 205 (218)
T ss_dssp H
T ss_pred H
Confidence 6
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.67 E-value=4.7e-08 Score=69.52 Aligned_cols=49 Identities=24% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 12 ALLHNPDLLILDEPTV-GLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 12 al~~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
..+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||...+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 4456999999999985 999999999999999988789999999998754
No 108
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.47 E-value=2e-08 Score=77.19 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=43.1
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
||||||+++|||++. +++||||+.|||+.. .+.++.+.+. .++|++.|..+
T Consensus 101 ~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 101 IARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp TTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGG
T ss_pred cccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccc
Confidence 799999999999886 999999999999987 4555566555 89999988874
No 109
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.44 E-value=8.9e-10 Score=79.04 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=55.3
Q ss_pred hHhHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC-HHHHHHHHhHHHhhhhh
Q psy6322 2 GQQRRTSLAV------ALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY-IEEARLLCAKLYCEEAR 74 (128)
Q Consensus 2 G~~qrv~ia~------al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~-l~~~~~~~d~v~~~~~~ 74 (128)
||+|++.++. ++..+|+...+|+ |+|+..... ++.+..+...+.++|.+||. +++++++||+
T Consensus 98 g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~------- 166 (189)
T 2bdt_A 98 VDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKN------- 166 (189)
T ss_dssp CSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHH-------
T ss_pred ccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHH-------
Confidence 4445555555 7778888777773 899988888 88888876568899999999 9999999999
Q ss_pred hcceEEEeeCceEEeecChhHHh
Q psy6322 75 QAHIIGLMREGVLLAEESPASLM 97 (128)
Q Consensus 75 ~~~~v~vl~~G~i~~~~~~~~l~ 97 (128)
| +++|+++.+|+++.+-
T Consensus 167 ----i--~~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 167 ----L--KTNPRFIFCMAGDPLE 183 (189)
T ss_dssp ----H--HHCGGGSCC-------
T ss_pred ----H--hhCCcEEEeecCCchh
Confidence 3 3999999999887653
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.40 E-value=4.2e-08 Score=71.82 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=46.1
Q ss_pred hHhHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHCCcEEE----EEeCCHHHHHHHHhHHHhh
Q psy6322 2 GQQRRT-SLAV---ALLHNPDLLILDE--PTVGLDPVLSKSIWDRLVEMTENGKTVM----ITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 2 G~~qrv-~ia~---al~~~p~lllLDE--Pt~gLD~~~~~~i~~~l~~~~~~g~tvi----~~sH~l~~~~~~~d~v~~~ 71 (128)
|||+++ ++.+ |++.+|+++|||| |+..+|+.....+.+++. ...++| .+||+.+ ..++|++.
T Consensus 87 ~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~~--~~~vd~i~-- 158 (189)
T 2i3b_A 87 FEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGKP--LALVEEIR-- 158 (189)
T ss_dssp HHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSSC--CTTHHHHH--
T ss_pred HHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCCc--hHHHHHHe--
Confidence 556555 3333 5789999999999 899999876555555444 444555 3459863 23444422
Q ss_pred hhhhcceEEEeeCceEEee
Q psy6322 72 EARQAHIIGLMREGVLLAE 90 (128)
Q Consensus 72 ~~~~~~~v~vl~~G~i~~~ 90 (128)
.+.+|+|+.-
T Consensus 159 ---------~~~~~~i~~~ 168 (189)
T 2i3b_A 159 ---------NRKDVKVFNV 168 (189)
T ss_dssp ---------TTCCSEEEEC
T ss_pred ---------ecCCcEEEEe
Confidence 4678888763
No 111
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.36 E-value=3.3e-07 Score=77.60 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=61.8
Q ss_pred hcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHH--CCcEEEEEeCCHHHHHHHHhHHHh-hhhhhcceEEEeeC
Q psy6322 14 LHNPDLLILDEP------TVGLDPVLSKSIWDRLVEMTE--NGKTVMITTHYIEEARLLCAKLYC-EEARQAHIIGLMRE 84 (128)
Q Consensus 14 ~~~p~lllLDEP------t~gLD~~~~~~i~~~l~~~~~--~g~tvi~~sH~l~~~~~~~d~v~~-~~~~~~~~v~vl~~ 84 (128)
...|+++|+||| |+|||+..+..+.+++.++.. .+.++++++|+++.+...+.++.- +.......|+|+.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 356999999999 999999999999999999753 378899999999844333333221 11233578999999
Q ss_pred ceEEeecChhHH
Q psy6322 85 GVLLAEESPASL 96 (128)
Q Consensus 85 G~i~~~~~~~~l 96 (128)
+..+..|+.+++
T Consensus 224 ~Dlv~~g~~~~~ 235 (608)
T 3szr_A 224 PDLVDKGTEDKV 235 (608)
T ss_dssp GGGSSSSSTTCC
T ss_pred hhhcCcccHHHH
Confidence 998888776543
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.33 E-value=5e-07 Score=63.48 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=43.2
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE-EEEEeCC-HHHH---HHHHhH
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKT-VMITTHY-IEEA---RLLCAK 67 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~t-vi~~sH~-l~~~---~~~~d~ 67 (128)
++.+|++|++|||++ +++..+..+++++.++.++|++ +|++||. ++++ .++++|
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SR 138 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTR 138 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHH
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHH
Confidence 467899999999998 6666688899999998877888 8889984 3433 677777
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.27 E-value=9.3e-07 Score=64.77 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=39.0
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHH-CCcEEEEEeCCHHHHHH---H-HhHHH-hh---hh
Q psy6322 15 HNPDLLILDEPTVGLDPV-------L-----SKSIWDRLVEMTE-NGKTVMITTHYIEEARL---L-CAKLY-CE---EA 73 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~---~-~d~v~-~~---~~ 73 (128)
.+|+++++|||++.+|+. . ...+...+.++.+ .|.|||+++|....... + .+... .. ..
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 589999999999999975 3 2345555555554 49999999998876654 1 00000 00 01
Q ss_pred hhcceEEEeeCc
Q psy6322 74 RQAHIIGLMREG 85 (128)
Q Consensus 74 ~~~~~v~vl~~G 85 (128)
..||++++|+.|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 146788899875
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.13 E-value=2.5e-07 Score=71.96 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=41.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTV-GLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~ 59 (128)
||||||+.+|||++ ++++||||+ |||+... +.++++... +.++++++||+.
T Consensus 116 gg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 116 GLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 68899988888875 999999998 5999874 556666544 889999999984
No 115
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.13 E-value=5.9e-07 Score=64.47 Aligned_cols=50 Identities=8% Similarity=-0.009 Sum_probs=42.4
Q ss_pred ChHhHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE
Q psy6322 1 GGQQRR-TSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKT 50 (128)
Q Consensus 1 gG~~qr-v~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~t 50 (128)
+||+|+ +..+++++.+|+++++|||||++|+.+...+++.+.++..+|.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 378888 89999999999999999999999999999999999998755543
No 116
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.05 E-value=1.1e-07 Score=74.60 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=42.6
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHH-HHHHhHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEA-RLLCAKL 68 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~-~~~~d~v 68 (128)
|||+||+++|++++.+|++||||||+..+|+.. ..+.+. +.+ |+++|+.+.. .....|.
T Consensus 179 ~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~-I~V~a~~~~~~~R~i~R~ 239 (312)
T 3aez_A 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFS-LYVDARIEDIEQWYVSRF 239 (312)
T ss_dssp TTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEE-EEEEECHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcE-EEEECCHHHHHHHHHHHH
Confidence 799999999999999999999999999998621 112222 444 6666777653 4455563
No 117
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.02 E-value=5.9e-09 Score=75.78 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=49.7
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH-HHCCcEEEEEeCCHH
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVG-------LDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~g-------LD~~~~~~i~~~l~~~-~~~g~tvi~~sH~l~ 59 (128)
++||++++++++.+|+++++|||+++ ||+.....+.+.+.+. .++|.|++.++|+..
T Consensus 98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35788899999999999999999999 9999999999998886 456999999999753
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.02 E-value=1e-05 Score=64.60 Aligned_cols=58 Identities=24% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhh
Q psy6322 6 RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCE 71 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~ 71 (128)
+.+|+++|..+|+++++|||+ |+... ...++.. ..|.+++.++|+.+ +...+||++.+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 468999999999999999999 76653 3334433 45899999999966 88999998654
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.87 E-value=6.3e-06 Score=65.12 Aligned_cols=67 Identities=7% Similarity=-0.151 Sum_probs=50.9
Q ss_pred hHhHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 2 GQQRRTSLAVALL-HNPDLLILDE---PT------VGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 2 G~~qrv~ia~al~-~~p~lllLDE---Pt------~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.+.++.+ .|.+|++++|. .+.+++++++.
T Consensus 262 ~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~ 339 (365)
T 1lw7_A 262 EGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKA 339 (365)
T ss_dssp HSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHH
Confidence 4566777777764 6999999999 65 58999999999999988754 48999999975 67888998865
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=2e-05 Score=60.96 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=38.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
..+|+++|+|||++ ||+..+..+.+.+.+.. .+.++|++||+++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 56899999999999 99999999999999864 47899999999753
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.72 E-value=5.8e-05 Score=56.12 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH
Q psy6322 10 AVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL 63 (128)
Q Consensus 10 a~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~ 63 (128)
+..++..++++||| ||+.++..+++.+. ++.||+++||+++++++
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 34566779999999 99999999999876 58999999999998765
No 122
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.71 E-value=1.1e-05 Score=62.98 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHH
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~ 59 (128)
.+||++||||++.+|+.++| +||+.+...+.+.+.++.+. |.|+|++||+-.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 57999999999999994444 44544445566666776644 899999999853
No 123
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.68 E-value=7.4e-06 Score=66.73 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=39.4
Q ss_pred hHhHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 2 GQQRRTSLAVALLHNPD---LLILDEPT-VGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~---lllLDEPt-~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+++|+++|+|+++.+|+ ++++|||| .|||+... +++.++. .+.++|++.|..+.
T Consensus 122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~Dl 179 (418)
T 2qag_C 122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKADT 179 (418)
T ss_dssp HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTTS
T ss_pred HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcccC
Confidence 45677889999999999 99999999 69999874 3444444 47888888887653
No 124
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.63 E-value=7.7e-06 Score=61.03 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH-HHHHhH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA-RLLCAK 67 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~-~~~~d~ 67 (128)
+||+||+.+ ++++.+|+++|||||....+.. +.++ .+.+|+++||+...+ ..++++
T Consensus 119 ~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~ 175 (245)
T 2jeo_A 119 FVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDVRLSRRVLRD 175 (245)
T ss_dssp TTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHHHHHHHHHHH
T ss_pred ccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHHHHHHHHHHHH
Confidence 588999877 5888899999999998888763 2222 378999999974434 444443
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.54 E-value=9.9e-05 Score=59.71 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=43.3
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CcEEEEEeCCHHHHHH--H---------HhHHHh
Q psy6322 15 HNPDLLILDEPTVGLDPVLS------------KSIWDRLVEMTEN-GKTVMITTHYIEEARL--L---------CAKLYC 70 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~------------~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~--~---------~d~v~~ 70 (128)
.+|+++++|||++.+|+... ..+...|.++.++ |.|||+++|....... + ..+++
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l- 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIM- 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHH-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHH-
Confidence 57999999999999986433 5577778887654 9999999998543321 1 11111
Q ss_pred hhhhhcceEEEeeCce
Q psy6322 71 EEARQAHIIGLMREGV 86 (128)
Q Consensus 71 ~~~~~~~~v~vl~~G~ 86 (128)
...+|.+++|++++
T Consensus 351 --~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 --AYSSTTRLGFKKGK 364 (400)
T ss_dssp --HHHCSEEEEEEECS
T ss_pred --HHhcceEEEEEecC
Confidence 22367788888764
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.47 E-value=0.00022 Score=51.88 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=33.9
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HHCCcEEEEEeCCHHH
Q psy6322 15 HNPDLLILDEPTVGL--DPVLSKSIWDRLVEM-TENGKTVMITTHYIEE 60 (128)
Q Consensus 15 ~~p~lllLDEPt~gL--D~~~~~~i~~~l~~~-~~~g~tvi~~sH~l~~ 60 (128)
.+|+++++|+|+..+ |+.....+...+.++ .+.|.||++++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 589999999999887 664455555555555 4669999999998875
No 127
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.28 E-value=0.00073 Score=53.49 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHCCcEEEEEeCCHHHHHHH-
Q psy6322 5 RRTSLAVALLHN--PDLLILDEPTVGL----------DP---VLSKSIWDRLVEM----TENGKTVMITTHYIEEARLL- 64 (128)
Q Consensus 5 qrv~ia~al~~~--p~lllLDEPt~gL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~sH~l~~~~~~- 64 (128)
+.+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+.++ .+.|.|||+++|....+...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456677777655 9999999999988 33 2223445555554 34599999999976543221
Q ss_pred -------HhHHHhhhhhhcceEEEeeCceEEeec
Q psy6322 65 -------CAKLYCEEARQAHIIGLMREGVLLAEE 91 (128)
Q Consensus 65 -------~d~v~~~~~~~~~~v~vl~~G~i~~~~ 91 (128)
..+.+ ...|+.++.++.+++...|
T Consensus 206 ~~p~~~~gg~~l---~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKAL---KFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHH---HHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHh---hhccceEEEEEEeeeeecC
Confidence 11111 1236777788877665444
No 128
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.21 E-value=9.9e-07 Score=71.43 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=56.1
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCc-eEEeec
Q psy6322 16 NP--DLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREG-VLLAEE 91 (128)
Q Consensus 16 ~p--~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G-~i~~~~ 91 (128)
+| ++.++|||+.++|+......++.+.+. ...|.|++ +|.+..+..+|+++.- +|++| +++..+
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~----------~L~~G~~~~~~~ 206 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQ----------YLTETKQPIRKG 206 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHH----------HHHTTCSCGGGS
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHH----------HhccCCceeecC
Confidence 78 999999999999999999999999998 66677764 9999999999999542 68889 887766
Q ss_pred Ch
Q psy6322 92 SP 93 (128)
Q Consensus 92 ~~ 93 (128)
+.
T Consensus 207 ~~ 208 (392)
T 1ni3_A 207 DW 208 (392)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 129
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.17 E-value=0.00023 Score=61.85 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=52.9
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEE-eCCHHHHHHHHhH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTV-GLDPVLSKSIWDRLVEMTENGKTVMIT-THYIEEARLLCAK 67 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~~-sH~l~~~~~~~d~ 67 (128)
|+.+|..++..++.+++++|+|||.. ++|......+...+........++++| ||+.+.+..+++.
T Consensus 194 G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 194 GMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp HHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred HHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 78899999999999999999999996 999877666666666555456777774 9998877777654
No 130
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.06 E-value=2.4e-05 Score=60.99 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=42.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~ 65 (128)
+||+||+..+++++.+|+++ ||| ..+.+.++++. .+.||+++||+.-.+..+.
T Consensus 144 ~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 144 IAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGS
T ss_pred HHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHh
Confidence 48999999888999999987 998 67888888764 6899999999765554443
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.02 E-value=1.3e-05 Score=59.58 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=32.4
Q ss_pred HH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHHC
Q psy6322 12 AL-LHNPDLLILD----EPTVGLDPVLSKSIWDRLVEMTEN 47 (128)
Q Consensus 12 al-~~~p~lllLD----EPt~gLD~~~~~~i~~~l~~~~~~ 47 (128)
++ +.+|++++|| |||+|+|+.....+.+.+.++.++
T Consensus 159 al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 159 NLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp ETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 44 8999999999 999999999999999999988654
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.02 E-value=0.0004 Score=56.48 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=47.0
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEe-CCHHHHHHHHhHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITT-HYIEEARLLCAKLY 69 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~s-H~l~~~~~~~d~v~ 69 (128)
+|++|++.++++|+.+|.++++ +++|+... ...+.+.+. .+.+.+++++| |.-+-+..+++.+.
T Consensus 255 ~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 255 TLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp HHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 4799999999999999999999 99998876 444444444 34577766554 55556777776654
No 133
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.98 E-value=0.00063 Score=52.67 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=46.3
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HC-CcEEEE-EeCCHHHHHHHHhHHHhhhhhhcceEEEeeCce
Q psy6322 11 VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT--EN-GKTVMI-TTHYIEEARLLCAKLYCEEARQAHIIGLMREGV 86 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~--~~-g~tvi~-~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~ 86 (128)
.+.+.+|+++|+| |+|+|+.....+.++..-+. .. +..+++ ++|..+++.++++++. .+..+.
T Consensus 177 l~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-----------~l~~~g 243 (296)
T 2px0_A 177 KELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-----------SVPVNQ 243 (296)
T ss_dssp HHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-----------SSCCCE
T ss_pred HHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-----------cCCCCE
Confidence 3345999999999 89999887766666544332 12 334455 5999999999988732 456667
Q ss_pred EEee
Q psy6322 87 LLAE 90 (128)
Q Consensus 87 i~~~ 90 (128)
++.+
T Consensus 244 iVlt 247 (296)
T 2px0_A 244 YIFT 247 (296)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6664
No 134
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.93 E-value=0.0012 Score=53.48 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=37.9
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHC-CcEEEEEeC
Q psy6322 6 RTSLAVALL--HNPDLLILDEPTVGLD--------PVLSKSIWDRLVEMTEN-GKTVMITTH 56 (128)
Q Consensus 6 rv~ia~al~--~~p~lllLDEPt~gLD--------~~~~~~i~~~l~~~~~~-g~tvi~~sH 56 (128)
..+.++.+. .+|+++++|+|+...+ ......+...|+.++++ |.+||+++|
T Consensus 301 i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 301 IRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 345667766 6899999999988664 23345566777777644 999999999
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.72 E-value=0.0022 Score=52.92 Aligned_cols=60 Identities=27% Similarity=0.278 Sum_probs=44.2
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEP----------TVGLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEA 61 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEP----------t~gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~ 61 (128)
++++|..+.+|....|.+|++||+ +.|.|+.....+.+++..+. ..+..||.+||.++.+
T Consensus 94 ~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 567788899999999999999999 34677777777777776653 3478899999998644
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.54 E-value=5.3e-05 Score=58.64 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=26.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV 32 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~ 32 (128)
|||+||+.+|++...+|+++|+|||++|+|+.
T Consensus 137 gGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 137 KGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred CccccccccccceEcCCCEEEEeCccccCCcc
Confidence 68999999873333399999999999999985
No 137
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.31 E-value=0.013 Score=44.98 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 4 QRRTSLAVALLHNPDLLILDEP-TVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEP-t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
.+|.+++.+...+++++|+||| +.|+|......+.+...... ...+++++..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEEEG
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEEeC
Confidence 3577888888899999999999 99999988888888776653 4555555543
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.95 E-value=0.01 Score=48.01 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=37.0
Q ss_pred cCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 15 HNPDLLILDEPTVGLD-PVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
.+|++|++||+..-.+ ...+..++..+..+...|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3899999999977655 3678889999998887789999999983
No 139
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.28 E-value=0.0042 Score=43.56 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.8
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
+|++|++.++|++.++|+++ +|+.....+++.+..+...+..+|.++
T Consensus 112 ~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 112 LRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp EECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred ecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence 47899999999999999876 688888888887766543333344443
No 140
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.23 E-value=0.0085 Score=48.93 Aligned_cols=52 Identities=6% Similarity=-0.034 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCcEEEEEeCCH
Q psy6322 7 TSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYI 58 (128)
Q Consensus 7 v~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~-~~~~g~tvi~~sH~l 58 (128)
+.++++|..+++++++|+|+..|.+.....+.+.+++ +...|.+|+.+|.+-
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 6789999999999999999999999999999999997 667799999998753
No 141
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.86 E-value=0.035 Score=43.74 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHh
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYC 70 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~ 70 (128)
..++..|+.++..+|+.+++|||.. ..+.+.+..+.....|++.++|..+ +...++|+..
T Consensus 239 ~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~ 298 (361)
T 2gza_A 239 VTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELTFERLAL 298 (361)
T ss_dssp CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHH
Confidence 3567889999999999999999986 3455667666443467899999965 8899999774
No 142
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.76 E-value=0.00069 Score=48.50 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=32.1
Q ss_pred ChHhHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHHCCc
Q psy6322 1 GGQQRRTSLAVALLHNPDLL-------ILDEPTVG---LDPVLSKSIWDRLVEMTENGK 49 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~ll-------lLDEPt~g---LD~~~~~~i~~~l~~~~~~g~ 49 (128)
|||+||++||||++.+|++. +=|.|..+ +|......+.+++.+...+|.
T Consensus 106 gGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 106 KAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp GGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred CCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence 69999999999999999873 22444211 234455677777766655544
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.72 E-value=0.053 Score=41.58 Aligned_cols=52 Identities=15% Similarity=0.014 Sum_probs=40.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE---NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~---~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+|.++++||+... |+.....+...+.++.. .+.++|++||+.+....+.++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 45889999999876 88888888888776655 578999999998766555544
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.71 E-value=0.025 Score=43.93 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=29.4
Q ss_pred ChHhHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6322 1 GGQQRRT---SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM 44 (128)
Q Consensus 1 gG~~qrv---~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~ 44 (128)
+|+.+++ ++++++..+|+++|+|||.. ......+++.+.++
T Consensus 168 ~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 168 GADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 4678888 89999999999999999974 23334444444443
No 145
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.53 E-value=0.027 Score=42.40 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 11 VALLHNPDLLILDEPTVG-LDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~g-LD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
.++..+|+++|+|||-.- .+.......++.+.+....|..++.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 345578999999998642 4433334456666666677889999998
No 146
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.49 E-value=0.025 Score=39.77 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM 44 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~ 44 (128)
...+|++++.+|+++++| ||++|+.+...+++.+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999 9999999999999988763
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.042 Score=42.91 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=41.8
Q ss_pred hHhHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe--CCHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITT--HYIEE 60 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s--H~l~~ 60 (128)
|++|.+. +.+...++-++++| +|..|+|+.....+++.+.+... +..++++. ||+..
T Consensus 235 ~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 235 IEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp HHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC
T ss_pred HHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC
Confidence 3445444 44445677788999 99999999988888777776543 78888888 88753
No 148
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.33 E-value=3.1e-05 Score=64.50 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEE--EeCCHHHHHHHHhH
Q psy6322 24 EPTVGLDPVLSKSIWDRLVEMTENGKTVMI--TTHYIEEARLLCAK 67 (128)
Q Consensus 24 EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~--~sH~l~~~~~~~d~ 67 (128)
| ++|+||.....+++.+.++...|.|+++ +||++++++..|..
T Consensus 415 E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 415 E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 6 9999999888888878777666899985 99999999988863
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.28 E-value=0.0025 Score=53.20 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHH
Q psy6322 12 ALLHNPD-LLILDEPTVGLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIE 59 (128)
Q Consensus 12 al~~~p~-lllLDEPt~gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~ 59 (128)
++...|. ++++||+.+-++.. ...+.+.+.++. +-|.++|++||.++
T Consensus 292 ~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 292 VLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp BCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred ccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 3456687 89999999888732 334555555442 34889999999987
No 150
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=93.94 E-value=0.0007 Score=55.97 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=50.5
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHH--HHHHhHHHhhhhhhcceEEEeeCceE
Q psy6322 11 VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEA--RLLCAKLYCEEARQAHIIGLMREGVL 87 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~--~~~~d~v~~~~~~~~~~v~vl~~G~i 87 (128)
|||..+ ++||+ ||++.+||. +..+.. ++.+. +.++.++||+++++ .++++++. .+..+.+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia-----------~~gg~gi 90 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMA-----------LMGGIGF 90 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHH-----------HTTCEEE
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHH-----------hcCCeeE
Confidence 688888 99999 999999994 433332 34333 67889999999998 88888844 5666666
Q ss_pred Eee-cChhHHh
Q psy6322 88 LAE-ESPASLM 97 (128)
Q Consensus 88 ~~~-~~~~~l~ 97 (128)
+.. ++++++.
T Consensus 91 i~~~~t~e~~~ 101 (514)
T 1jcn_A 91 IHHNCTPEFQA 101 (514)
T ss_dssp ECCSSCHHHHH
T ss_pred EecCCCHHHHH
Confidence 653 4666653
No 151
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.91 E-value=0.05 Score=42.55 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.5
Q ss_pred ChHhHHHHHHHHH---hc--CCCEEEEeCCC
Q psy6322 1 GGQQRRTSLAVAL---LH--NPDLLILDEPT 26 (128)
Q Consensus 1 gG~~qrv~ia~al---~~--~p~lllLDEPt 26 (128)
+|++||..++++| .. +++++++|||+
T Consensus 299 ld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 299 GSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp --CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4789999999999 76 89999999997
No 152
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.38 E-value=0.26 Score=40.75 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=41.4
Q ss_pred ChHhHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 1 GGQQRRTSLAVALL--H---------------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 1 gG~~qrv~ia~al~--~---------------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
|||+|-.-+|.+.+ + .-++++|||. +-+|....+.++++++++ |.=+|+++-+
T Consensus 382 GGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~ 451 (483)
T 3euj_A 382 TGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE 451 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred CccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 68888655544332 2 2368999999 999999999999999865 7788888887
No 153
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.10 E-value=0.1 Score=36.53 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy6322 7 TSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT 45 (128)
Q Consensus 7 v~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~ 45 (128)
...|++++.+|++.++| |+++|+.+...+++.+.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887753
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.75 E-value=0.17 Score=39.57 Aligned_cols=76 Identities=14% Similarity=0.003 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEe
Q psy6322 4 QRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLM 82 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl 82 (128)
.+.-.+++++..++++++||.++ |. .+.+.++.+. ..+.|++++||. ++......-+- .......-|.++
T Consensus 231 ~eL~~i~ral~~de~llvLDa~t-~~------~~~~~~~~~~~~~~it~iilTKl-D~~a~~G~~l~-~~~~~~~pi~~i 301 (328)
T 3e70_C 231 DEMKKIARVTKPNLVIFVGDALA-GN------AIVEQARQFNEAVKIDGIILTKL-DADARGGAALS-ISYVIDAPILFV 301 (328)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGG-TT------HHHHHHHHHHHHSCCCEEEEECG-GGCSCCHHHHH-HHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecHH-HH------HHHHHHHHHHHhcCCCEEEEeCc-CCccchhHHHH-HHHHHCCCEEEE
Confidence 34556889999888888888555 43 4455556665 358999999994 32221111100 011223446677
Q ss_pred eCceEE
Q psy6322 83 REGVLL 88 (128)
Q Consensus 83 ~~G~i~ 88 (128)
..|.-+
T Consensus 302 ~~Ge~v 307 (328)
T 3e70_C 302 GVGQGY 307 (328)
T ss_dssp ECSSST
T ss_pred eCCCCc
Confidence 777654
No 155
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.87 E-value=0.24 Score=38.97 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=37.3
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-CcEEEEEe
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-EN-GKTVMITT 55 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~-g~tvi~~s 55 (128)
++++|+..|...+.+++++|.|+|... ...|...++++. .. |..+|++-
T Consensus 113 ~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 568899999999999999999998654 335666666665 34 68888874
No 156
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.55 E-value=0.71 Score=34.89 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=33.5
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTV-GLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..+|++|++||+-. .-+...+..++..+..+...|..+|++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45799999999854 345577888999998887777777776663
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.17 E-value=0.54 Score=34.92 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=37.1
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHH----CCcEEEEEeCCHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDP----------VLSKSIWDRLVEMTE----NGKTVMITTHYIE 59 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~----------~~~~~i~~~l~~~~~----~g~tvi~~sH~l~ 59 (128)
+++.+..+..+...+|.+|++||+.+-.+. .....+...+..... .+..||.+|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 345667777888889999999999765442 223344444544321 2456788888765
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.41 E-value=9e-05 Score=56.43 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH---------HHHHHHHHHHHHCCcEEEEEeC
Q psy6322 5 RRTSLAVALLHNPDL--LILDEPTVGLDPVLS---------KSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 5 qrv~ia~al~~~p~l--llLDEPt~gLD~~~~---------~~i~~~l~~~~~~g~tvi~~sH 56 (128)
||+++++++..+|++ +|+||+|+.+|...+ ....+.+.. ..+|.|.+.+.|
T Consensus 177 ~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~g~t~~~~a~ 238 (261)
T 2eyu_A 177 GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQGLITLEDAM 238 (261)
T ss_dssp SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH-HHTTSSCHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHcCCCCHHHHH
Confidence 789999999999999 999999999987632 234444444 456777655444
No 159
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.14 E-value=0.2 Score=35.13 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=26.8
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHH-HHHHHHHHHCCcEEEEE-eCCHHHHH
Q psy6322 14 LHNPDLLILDEPTV-GLDPVLSKSI-WDRLVEMTENGKTVMIT-THYIEEAR 62 (128)
Q Consensus 14 ~~~p~lllLDEPt~-gLD~~~~~~i-~~~l~~~~~~g~tvi~~-sH~l~~~~ 62 (128)
+.++++|++||+-. .+++..+..+ ..++......+..+|++ .+.++++.
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~ 164 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLA 164 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH
Confidence 45788999999932 3343334434 45666554454455554 45566543
No 160
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.06 E-value=0.66 Score=36.27 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=50.2
Q ss_pred cCCCEEEEeCCCCCC---CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-----HhHHHhhhhhhcceEEEeeCc
Q psy6322 15 HNPDLLILDEPTVGL---DPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-----CAKLYCEEARQAHIIGLMREG 85 (128)
Q Consensus 15 ~~p~lllLDEPt~gL---D~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-----~d~v~~~~~~~~~~v~vl~~G 85 (128)
..|.++++||-=.=+ .+.....+.+.+++.++.|..++++||.++.+..- +..+ .++|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~i----l~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQAL----LDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHH----HHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHH----HHhhhhhheeCCC
Confidence 358999999986655 47788889999999888899999999999877531 2232 2556666666653
No 161
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.97 E-value=0.2 Score=39.07 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=35.9
Q ss_pred hHhHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q psy6322 2 GQQRRTSLAVALLH------NPDLLILDEPTVGLDPVLSKSIWDRLVEMTE 46 (128)
Q Consensus 2 G~~qrv~ia~al~~------~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~ 46 (128)
|++|++..+++++. .|+++. +|++|+.+...+++.|.++..
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 68899999998887 688885 999999999999999998753
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.82 E-value=0.019 Score=41.23 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q psy6322 12 ALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE 46 (128)
Q Consensus 12 al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~ 46 (128)
+++.+|++++||||++++|..+...|.+.|.+...
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 56677778888888999998888888888877653
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.06 E-value=0.14 Score=38.85 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEM---TENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~---~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.|.++++||+....+......+..++..+ ...+.++|++||+.+....+..+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~ 182 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPR 182 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHH
Confidence 38899999997654221122233333333 23368899999988654444433
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.44 E-value=0.59 Score=32.90 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=29.9
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcE-EEEEeCC
Q psy6322 15 HNPDLLILDEPTVG-LDPVLSKSIWDRLVEMTENGKT-VMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~g-LD~~~~~~i~~~l~~~~~~g~t-vi~~sH~ 57 (128)
.+|.++++||.-.- -+......+.+.+......+.. +|++|+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 56899999996442 2233477788888887665654 7777764
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.28 E-value=0.65 Score=35.60 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHH-CCcEEEEEeCCHHHH
Q psy6322 5 RRTSLAVALL---HNPDLLILDEPTVGLDP--------VL----SKSIWDRLVEMTE-NGKTVMITTHYIEEA 61 (128)
Q Consensus 5 qrv~ia~al~---~~p~lllLDEPt~gLD~--------~~----~~~i~~~l~~~~~-~g~tvi~~sH~l~~~ 61 (128)
+.+..++.++ .+|+++++|+.++-... .. ...+...|..+.+ .+.+||+++|-....
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 4455666666 67999999998864432 12 2334444455543 489999999976544
No 166
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.52 E-value=1.2 Score=34.58 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=29.7
Q ss_pred cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHH-CCcEEEEEeCCHHHHH
Q psy6322 15 HNPDLLILDEPTVGLDPV--------L----SKSIWDRLVEMTE-NGKTVMITTHYIEEAR 62 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~--------~----~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~ 62 (128)
.+++++++|++++-.... . ...+...|.++.+ .+.+||+++|......
T Consensus 218 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 278 (343)
T 1v5w_A 218 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278 (343)
T ss_dssp SSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred CCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCC
Confidence 679999999998755331 1 2334444555554 4899999999876554
No 167
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.45 E-value=0.0061 Score=43.90 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=29.8
Q ss_pred hHhHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH-HHHHHhH
Q psy6322 2 GQQRRTSLA-VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE-ARLLCAK 67 (128)
Q Consensus 2 G~~qrv~ia-~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~-~~~~~d~ 67 (128)
|++|+++++ ++++.++.++++|||.. .++...--.++++++..+. +.+++.|
T Consensus 115 g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 115 AGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred CCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 566666665 55666666666666631 1112222356777777765 6666666
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.41 E-value=2.8 Score=31.96 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=36.3
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcE--EEEEeC
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKT--VMITTH 56 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~t--vi~~sH 56 (128)
++++|+..|...+.++++++.|+|... ...+.+.++++.++ |.. +|++-|
T Consensus 137 ~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 137 EDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 467888888888889999999998643 34466666666544 666 777754
No 169
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.51 E-value=3.4 Score=32.39 Aligned_cols=81 Identities=7% Similarity=0.053 Sum_probs=43.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-HCCcEEEEEeCCHHHHHHHH
Q psy6322 5 RRTSLAVALL--HNPDLLILDEPTVGLDPV-------------LSKSIWDRLVEM---T-ENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 5 qrv~ia~al~--~~p~lllLDEPt~gLD~~-------------~~~~i~~~l~~~---~-~~g~tvi~~sH~l~~~~~~~ 65 (128)
+...+++.+. .+|+++++|.+++=.... ..+.+.+.+.++ . +.+.+||+++|-...+....
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3445566553 689999999998755311 112344455444 2 44899999999765543221
Q ss_pred -h-------HHHhhhhhhcceEEEeeCceEE
Q psy6322 66 -A-------KLYCEEARQAHIIGLMREGVLL 88 (128)
Q Consensus 66 -d-------~v~~~~~~~~~~v~vl~~G~i~ 88 (128)
+ +.+ ...||.++.++..++.
T Consensus 208 g~~~~~~gG~~l---~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNAL---KFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHH---HHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcce---eeeccEEEEEEEeeee
Confidence 1 111 1236777777766544
No 170
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.34 E-value=0.00044 Score=55.10 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 5 RRTSLAVALLHNPDL--LILDEPTVGLDPVL---S-----KSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 5 qrv~ia~al~~~p~l--llLDEPt~gLD~~~---~-----~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
||+++++++..+|++ +|+||+|+.+|... . ..+.+...+...+|.|.+.+.|.+.
T Consensus 288 ~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 288 GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 788999999999999 99999999998541 1 2233333344456888777666654
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.16 E-value=0.85 Score=34.35 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH-HHHHHHhH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE-EARLLCAK 67 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~-~~~~~~d~ 67 (128)
+++++++|| ...+++.....+.+.+.+... ...+|++++... ....+.+|
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhCcchhhcc
Confidence 456999999 788999988888888887643 345666666554 23344444
No 172
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=82.43 E-value=0.84 Score=38.34 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeC
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTH 56 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH 56 (128)
.++...+.+.++.+|..++++.++.++|+... ...++++++... +.||+++||
T Consensus 170 ~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 170 GYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 56788899999999999999999999998844 467777777544 588888888
No 173
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.83 E-value=0.75 Score=35.17 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=25.9
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHH-HHHHHHHHCCcEEEEEeC-CHHHH
Q psy6322 14 LHNPDLLILDEPT-VGLDPVLSKSIW-DRLVEMTENGKTVMITTH-YIEEA 61 (128)
Q Consensus 14 ~~~p~lllLDEPt-~gLD~~~~~~i~-~~l~~~~~~g~tvi~~sH-~l~~~ 61 (128)
+.++++|++||.- ..+++..+..++ .++......++.+|++|+ .++++
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l 262 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADL 262 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHH
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 4578999999983 244444444444 466665434455666665 45544
No 174
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.97 E-value=2.6 Score=34.16 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 8 SLAVALLHNPDLLILDEPT-VG--LDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt-~g--LD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
+++.+...+++++|+|+|- .+ .|+.....+.++..........+++.++.-..+...++
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 4455555699999999997 35 78887777777665553334555666665444444443
No 175
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.59 E-value=1.9 Score=29.79 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
+|.++++||.-. +++.....+...+.+. ..+..+|++|+...
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999755 7887777777666543 23677888888765
No 176
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=79.51 E-value=1.1 Score=32.76 Aligned_cols=61 Identities=21% Similarity=0.150 Sum_probs=40.5
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH-HHHHHHHhH
Q psy6322 6 RTSLAVALL--HNPDLLILDEPTV--GLDPVLSKSIWDRLVEMTENGKTVMITTHYI-EEARLLCAK 67 (128)
Q Consensus 6 rv~ia~al~--~~p~lllLDEPt~--gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l-~~~~~~~d~ 67 (128)
.+..++..+ .+.+++||||.+. .++......+++++.+. -+...||+++... +++.+++|-
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcc
Confidence 444556666 5689999999965 34444555677777643 3478899999886 444445543
No 177
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.60 E-value=4.1 Score=29.90 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC----------HHHHHHHHhHHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY----------IEEARLLCAKLY 69 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~----------l~~~~~~~d~v~ 69 (128)
+|+++++||--. ++.. +.+.+..+.+.|.+||++.|+ ...+..+||+|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~ 147 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKIT 147 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEE
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEe
Confidence 599999999854 5532 444556666669999999993 466667888755
No 178
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.34 E-value=0.12 Score=36.50 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=33.4
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
|+.+|..++.....+|..+... .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 63 g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~ 118 (206)
T 1jjv_A 63 GELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIEN 118 (206)
T ss_dssp ---CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTT
T ss_pred ccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhc
Confidence 5667777777777766543222 3455666666665555432 356889999988765
No 179
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.88 E-value=0.93 Score=37.80 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=35.5
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM 44 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~ 44 (128)
|++|++..++....++.+|+|||... |++..+..+.+.|.+-
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 55677777778888999999999988 8999999999998863
No 180
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=74.08 E-value=4 Score=29.13 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH----------HHHHHHHhHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI----------EEARLLCAKL 68 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l----------~~~~~~~d~v 68 (128)
+.+++++||--. +|+.. .+.++++...|..||++.++. ..+.++||.|
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 479999999644 55432 456677666799999999865 6677788875
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.72 E-value=17 Score=28.42 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHH---HHHHHHHHHHC-CcEEEEEeCC
Q psy6322 6 RTSLAVALL--HNPDLLILDEPTVGLD-P------------VLSKS---IWDRLVEMTEN-GKTVMITTHY 57 (128)
Q Consensus 6 rv~ia~al~--~~p~lllLDEPt~gLD-~------------~~~~~---i~~~l~~~~~~-g~tvi~~sH~ 57 (128)
.+.+++.++ .+|+++++|.-++=.. . ...+. ++..|..+.++ +.|||++.|-
T Consensus 127 ~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 127 ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 345555554 5799999998544332 0 11222 34445555544 8999999887
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=71.34 E-value=5.5 Score=33.72 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 12 ALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 12 al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.-..++-++++| |+.|+++..... +......+.++|++.|.++.. ..+++
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~----~~~~~~~~ip~ilv~NKiD~~-~~~~~ 144 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERA----WTVAERLGLPRMVVVTKLDKG-GDYYA 144 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHH----HHHHHHTTCCEEEEEECGGGC-CCHHH
T ss_pred HhhcCcEEEEEc-CCcccchhHHHH----HHHHHHccCCEEEEecCCchh-hhHHH
Confidence 445678889999 999999887733 333334588999999999865 44444
No 183
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=71.23 E-value=5.1 Score=29.97 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=36.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC----------HHHHHHHHhHHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY----------IEEARLLCAKLY 69 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~----------l~~~~~~~d~v~ 69 (128)
+.+.+++++||--.-.+ +.++++.+...|+.||++.++ ...+..+||.|.
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVV 147 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEE
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEE
Confidence 36789999999966543 666666666679999999999 455556777644
No 184
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=69.49 E-value=6.9 Score=30.35 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~ 65 (128)
.+|++++|-|..|++....+.+ ..+..++++|.+.....+-.
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~l--------~~~g~ivyvsc~p~t~ard~ 336 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKMV--------QAYPRILYISCNPETLCKNL 336 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHHH--------TTSSEEEEEESCHHHHHHHH
T ss_pred CCCEEEECcCccccHHHHHHHH--------hCCCEEEEEECCHHHHHHHH
Confidence 5799999999999886433322 25788999999987655433
No 185
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=68.54 E-value=7.5 Score=30.92 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHC-CcEEEEEeCC
Q psy6322 7 TSLAVALL--HNPDLLILDEPTVGLDP----------VLSKSIWDRLVEMTEN-GKTVMITTHY 57 (128)
Q Consensus 7 v~ia~al~--~~p~lllLDEPt~gLD~----------~~~~~i~~~l~~~~~~-g~tvi~~sH~ 57 (128)
.+.++.+. ++|+++++|....=... .....+...|+.++++ +.+||+++|-
T Consensus 299 ~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 299 RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 34445444 57999999998643222 1223455666666544 8999999984
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=67.95 E-value=5.3 Score=30.14 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=44.1
Q ss_pred HHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-C--cEEEEEeCCHHHHHHHHhHHH
Q psy6322 8 SLAVALL--HNPDLLILDEPTVGLDPVL-SKSIWDRLVEMTEN-G--KTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 8 ~ia~al~--~~p~lllLDEPt~gLD~~~-~~~i~~~l~~~~~~-g--~tvi~~sH~l~~~~~~~d~v~ 69 (128)
.+++.+. ..|.++++ +.+|... +..+.+.+.++.+. | ..+.+|+|+-..+..+++.+.
T Consensus 107 ~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 107 MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 4556665 68889988 8999876 67788888888653 4 367778888888888888854
No 187
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=67.67 E-value=20 Score=28.09 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=33.9
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---H-HCCcEEEEEeCCHHHH
Q psy6322 5 RRTSLAVALL--HNPDLLILDEPTVGLD---P----------VLSKSIWDRLVEM---T-ENGKTVMITTHYIEEA 61 (128)
Q Consensus 5 qrv~ia~al~--~~p~lllLDEPt~gLD---~----------~~~~~i~~~l~~~---~-~~g~tvi~~sH~l~~~ 61 (128)
+.+.+++.+. .+++++++|..++=.- . ...+.+.+.++++ . +.+.+||+++|-...+
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~ 214 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKI 214 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC----
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 3445556665 5799999999875331 1 1223455666665 3 3489999998875543
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=67.67 E-value=10 Score=28.23 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHH
Q psy6322 7 TSLAVALLHNPDLLILDEPTV-------------GLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEA 61 (128)
Q Consensus 7 v~ia~al~~~p~lllLDEPt~-------------gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~ 61 (128)
-.+..|....|.++++||--+ +........++..+..+.. .+..||.+|+..+.+
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 344556667899999999531 2223334455555554432 367788899887643
No 189
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.64 E-value=0.12 Score=38.96 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=30.7
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHHH
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPTV------------GLDPVLSKSIWDRLV 42 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt~------------gLD~~~~~~i~~~l~ 42 (128)
|||+|++.+++|+.++|++| |||+. --|...+..|++.+.
T Consensus 140 gg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 140 GLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 68999999999999999975 99864 236666666666543
No 190
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=67.25 E-value=22 Score=22.91 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=41.8
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 14 LHNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 14 ~~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
..+|+.+++| .....+|..+...+.++.+++.+.|..+.++.-... +.++..
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~-v~~~l~ 98 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSR-VSQKLV 98 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHH-HHHHHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHH
Confidence 4678999999 568899999999999999999888999998876544 444433
No 191
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=65.61 E-value=11 Score=25.11 Aligned_cols=47 Identities=26% Similarity=0.134 Sum_probs=33.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
-+||.|+-+..-|+..+..+.+++....+.|..|.++|.+.+.-+++
T Consensus 57 tLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~~~~G~qL 103 (124)
T 1x52_A 57 TLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQL 103 (124)
T ss_dssp EEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred EEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCCCccHHHH
Confidence 35666665555588888889885555556788998888877765555
No 192
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.33 E-value=10 Score=25.59 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.+|.++++||. ..+++.....+...+.+. ..+..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 56889999995 556777777777777664 23566777777654
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=64.82 E-value=16 Score=23.97 Aligned_cols=40 Identities=8% Similarity=0.016 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
++.++++||. ..+++..+..+.+.+.+....+..+|.+|.
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4679999995 467888888888888875433455665554
No 194
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=63.74 E-value=7.5 Score=28.55 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC----------CHHHHHHHHhHHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH----------YIEEARLLCAKLY 69 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH----------~l~~~~~~~d~v~ 69 (128)
+.+++++||--. +|+.. + +.+.++...|+.||+..+ -+..+.++||.|.
T Consensus 101 ~~dvViIDEaQF-~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI---V-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVT 159 (214)
T ss_dssp SCCEEEECCGGG-SCTTH---H-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEE
T ss_pred CCCEEEEECccc-CCHHH---H-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEE
Confidence 479999999866 55432 2 556666667999999999 4566777887754
No 195
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.54 E-value=0.44 Score=34.31 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=27.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-----ENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-----~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
+..|+..+++|++.+.|......+.+.+.... .....++++.|+++++.+-..+++
T Consensus 146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 44556666778888888776666666555432 124567888889888877777744
No 196
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=62.91 E-value=12 Score=23.42 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=36.1
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 15 HNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
.+|+.+++| ....-+|..+...+.+..+++.+.|.++.++.-
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGM 84 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 578888888 557899999999999999999888999988853
No 197
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.74 E-value=4 Score=33.90 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=34.4
Q ss_pred hHHHHHHHHHh-cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCHHHHHHHHh
Q psy6322 4 QRRTSLAVALL-HNPD-LLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 4 ~qrv~ia~al~-~~p~-lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l~~~~~~~d 66 (128)
+|++.+++++. ..|+ ++|...|+.|.|... .++.+. .-|.|.+++|| ++...+...
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al~------~ak~f~~~~~itgvIlTK-LD~takgG~ 456 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS------QAKLFHEAVGLTGITLTK-LDGTAKGGV 456 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH------HHHHHHHHTCCSEEEEEC-GGGCSCCTH
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHHH------HHHHHHhhcCCCEEEEEc-CCCcccccH
Confidence 46777777653 4564 555555888876552 344444 34889999999 565443333
No 198
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=61.90 E-value=8 Score=28.12 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---H-CCcEEEEEeCCHHH
Q psy6322 8 SLAVALLHNPDLLILDEPTV----------GLDPVLSKSIWDRLVEMT---E-NGKTVMITTHYIEE 60 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~----------gLD~~~~~~i~~~l~~~~---~-~g~tvi~~sH~l~~ 60 (128)
.+..+....|.+|++||--. +-+......+..++..+. . .+..+|.+|+..+.
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 44556667899999999732 235666777888877763 2 25667888887653
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=61.47 E-value=18 Score=27.66 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHH------HCCcEEEEEeCCHHH
Q psy6322 7 TSLAVALLHNPDLLILDEP-------TVGLDPVLSKSIWDRLVEMT------ENGKTVMITTHYIEE 60 (128)
Q Consensus 7 v~ia~al~~~p~lllLDEP-------t~gLD~~~~~~i~~~l~~~~------~~g~tvi~~sH~l~~ 60 (128)
..+..+-..+|.+|++||. ..+.+......+.+++..+. ..+..||.+|+..+.
T Consensus 167 ~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 167 ALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp HHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred HHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 3445555678999999998 33333334344444444432 124556778887643
No 200
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=61.41 E-value=31 Score=22.47 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=41.0
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 15 HNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 15 ~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
.+|+.+++| .....+|..+...+.++.+++.+.|..+.++.-... +.++..
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~-v~~~l~ 101 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDR-LYGALN 101 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHH-HHHHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHH
Confidence 578899999 468899999999999999999888999998876543 444443
No 201
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=61.33 E-value=4.9 Score=30.91 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=37.6
Q ss_pred hHhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEeCCHH
Q psy6322 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENG-KTVMITTHYIE 59 (128)
Q Consensus 2 G~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g-~tvi~~sH~l~ 59 (128)
.++++..+++..+.+|+++||.-..+..|... .....++.++...| .++++.+. .+
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK-~D 214 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK-ID 214 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC-GG
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC-Cc
Confidence 45678899999999999888885444455443 44556666665545 56666655 44
No 202
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=61.08 E-value=16 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=29.6
Q ss_pred HHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEE-eCCHHH
Q psy6322 11 VALLHNPDLLILDEPTV-GLDPVLSKSIWDRLVEMTENGKTVMIT-THYIEE 60 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~~-sH~l~~ 60 (128)
...+.+.+++++||.-. ++|........+.+.....+-.++++| |...+.
T Consensus 171 ~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 33578999999999965 677666644444344333333455444 444443
No 203
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=58.69 E-value=28 Score=22.26 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=41.1
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+|+.+++| .....+|..+...+.+..+++.+ |..++++.-... +.++..+
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~-v~~~l~~ 95 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQ-PLRTMAR 95 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHH-HHHHHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHH-HHHHHHH
Confidence 578999999 56889999999999999999988 999998876544 4444443
No 204
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=57.61 E-value=15 Score=28.65 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH-----HhHHHhhhhhhcceEEEeeC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL-----CAKLYCEEARQAHIIGLMRE 84 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~-----~d~v~~~~~~~~~~v~vl~~ 84 (128)
.|-++++||-.+=... ..+.+.+.+.++.|..+++++++++.+... +..+ ..+|+..+++..
T Consensus 279 ~~~~~~lDE~~~l~~~---~~l~~~~~~~R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i----~~n~~~~i~~~~ 345 (437)
T 1e9r_A 279 RRLWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTL----RASFRSLVVLGG 345 (437)
T ss_dssp CCEEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHH----HTTCCEEEEEEC
T ss_pred ccEEEEEEcccccccc---hhHHHHHHHHhccCCEEEEEecCHHHHHHHHCHHHHHHH----HhccCcEEEEeC
Confidence 3568999998654321 146677777778899999999999988753 2332 245555555554
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=56.30 E-value=7.8 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6322 8 SLAVALLHNP-DLLILDEPTVGLDPVLSKSIWDRLVEM 44 (128)
Q Consensus 8 ~ia~al~~~p-~lllLDEPt~gLD~~~~~~i~~~l~~~ 44 (128)
.+..++...| .++++||. ..+++.....+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 3455555555 79999997 678898888898888874
No 206
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=55.75 E-value=21 Score=23.04 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=37.2
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHH
Q psy6322 16 NPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 16 ~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~ 65 (128)
+++.++|| .....+|..+...+.++.+++.+.|..++++.-... +.++.
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~-v~~~l 96 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQD-LRESL 96 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSH-HHHHH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHH
Confidence 46788899 567788999999999988888877888888766543 43343
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.07 E-value=1 Score=34.55 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhH
Q psy6322 27 VGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 27 ~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+||+.....+.+++.+..+ .+ ++|+.+.+..++++
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 67888889999999988764 34 36888877777765
No 208
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=53.94 E-value=39 Score=21.32 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=24.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++|+|-...+.|-. .+.+.+++. ..+..||+.|..
T Consensus 47 ~~~~dlvllD~~lp~~~g~---~l~~~l~~~-~~~~~ii~ls~~ 86 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDGI---ELVDNILKL-YPDCSVIFMSGY 86 (141)
T ss_dssp TSCCSEEEEESCCSSSCHH---HHHHHHHHH-CTTCEEEEECCS
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhh-CCCCcEEEEeCC
Confidence 3569999999888777742 344444443 234556555543
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=53.51 E-value=72 Score=26.43 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=49.0
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHH
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
..|+-|+..||..+|-.||.=-|=+|= ...+.+++..+.++|..|+++++-=.-+..++.|+.
T Consensus 192 ~~Q~~AV~~al~~~~~~lI~GPPGTGK----T~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQKELAIIHGPPGTGK----TTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCSSEEEEECCTTSCH----HHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEECCCCCCH----HHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHH
Confidence 358889999998777777777787772 334666777777789999999999888888888843
No 210
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=52.84 E-value=39 Score=26.17 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHH--CCcEEEEEeCCHHHHHHHHhH
Q psy6322 6 RTSLAVALLHNPDLLILDE-PTVGLDPVLSKSIWDRLVEMTE--NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDE-Pt~gLD~~~~~~i~~~l~~~~~--~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+++..+|+..|+++++=| |++ .+.+.+.+++..+ ++.++|+++--......+++.
T Consensus 175 ~lAl~a~lA~ga~~iliPE~~~~------~~~i~~~i~~~~~~gk~~~iIvvaEG~~~~~~l~~~ 233 (319)
T 1zxx_A 175 DIAMRVGVACGADAIVIPERPYD------VEEIANRLKQAQESGKDHGLVVVAEGVMTADQFMAE 233 (319)
T ss_dssp HHHHHHHHHTTCSEEECTTSCCC------HHHHHHHHHHHHHTTCCCEEEEEETTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCC------HHHHHHHHHHHHHcCCCcEEEEEeCCcChHHHHHHH
Confidence 6889999999999999955 443 3466677776543 467788888765444555554
No 211
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=52.76 E-value=45 Score=21.68 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 16 NPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 16 ~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
.++.++|| .....+|..+...+.++.+++.+.|..+.++.-... +.++..
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~-v~~~l~ 113 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQ-VVNDLT 113 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHH-HHHHHH
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHH
Confidence 67899999 568899999999999999999888999999876544 444443
No 212
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=52.70 E-value=35 Score=27.10 Aligned_cols=47 Identities=23% Similarity=0.144 Sum_probs=38.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
.+|+.|+-+..-|+..+..+.+++....+.|..|.++|.+.+.-+++
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL 356 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQL 356 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHH
T ss_pred EEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhh
Confidence 58999999988899888888887777767788888888776665555
No 213
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=52.36 E-value=12 Score=28.00 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.++.++++||. ..++......+.+.+.+. ..+..+|++|++..
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 35789999995 456777777777666543 23567788888765
No 214
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=52.32 E-value=38 Score=21.14 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE-EEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKT-VMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~t-vi~~sH~ 57 (128)
-..|+++|+|--..|.|-. .+.+.+++.. .... |+++++.
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~-~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRERW-PETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHHHC-TTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCcEEEEeCCC
Confidence 4579999999988777742 3334444432 2344 4555544
No 215
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=51.98 E-value=36 Score=20.33 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++++|-...+.|-. .+.+.+++.. ....+|+.|.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 81 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKK-KDAKIILLTA 81 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHC-TTCCEEEEES
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccC-CCCeEEEEEC
Confidence 3579999999888777643 3344444432 2344444443
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=50.92 E-value=11 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=27.6
Q ss_pred cCCCEEEEeCCCCCC--------CHHHH----HHHHHHHHHHH-HCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGL--------DPVLS----KSIWDRLVEMT-ENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gL--------D~~~~----~~i~~~l~~~~-~~g~tvi~~sH~l~ 59 (128)
.+|+++++|.-++=. +...+ ..+...|..+. +.+.+||++.|-..
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~ 260 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSA 260 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEEC
T ss_pred cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceee
Confidence 469999999876422 12222 33444445544 45899999988543
No 217
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=50.78 E-value=40 Score=20.53 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=14.9
Q ss_pred HhcCCCEEEEeCCCCCCCH
Q psy6322 13 LLHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~ 31 (128)
--..|+++|+|--..+.|-
T Consensus 43 ~~~~~dlii~D~~~p~~~g 61 (120)
T 3f6p_A 43 EELQPDLILLDIMLPNKDG 61 (120)
T ss_dssp HTTCCSEEEEETTSTTTHH
T ss_pred hhCCCCEEEEeCCCCCCCH
Confidence 3467999999988777653
No 218
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=50.61 E-value=6.1 Score=30.90 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=27.2
Q ss_pred hHhHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy6322 2 GQQRRTSLA----VAL-LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT 45 (128)
Q Consensus 2 G~~qrv~ia----~al-~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~ 45 (128)
|+++++.++ +++ ..+|++ +|+|++|..+...+++.|.+..
T Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 308 DLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 355666655 454 334444 6889998888888888887754
No 219
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=50.49 E-value=44 Score=25.89 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHH--CCcEEEEEeCCHHHHHHHHhH
Q psy6322 6 RTSLAVALLHNPDLLILDE-PTVGLDPVLSKSIWDRLVEMTE--NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDE-Pt~gLD~~~~~~i~~~l~~~~~--~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+++..+|+..|+++++=| |++ .+.+.+.+++..+ ++..+|+++--......+++.
T Consensus 176 ~lAl~a~lA~ga~~iliPE~~~~------~~~i~~~i~~~~~~gk~~~iIvvaEG~~~~~~la~~ 234 (320)
T 1pfk_A 176 DLTLAAAIAGGCEFVVVPEVEFS------REDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHF 234 (320)
T ss_dssp HHHHHHHHHTTCSEEECTTSCCC------HHHHHHHHHHHHHTTCSCEEEEEESSSSCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCC------HHHHHHHHHHHHHcCCCcEEEEEeCCcchHHHHHHH
Confidence 6889999999999999955 443 2456666776543 467788887755334444443
No 220
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=49.62 E-value=22 Score=25.19 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 26 TVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 26 t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
..||++.....+.+++....++|..+.++|=...
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~sgyRs 63 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRS 63 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCC
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 4689999999999999999888988766655443
No 221
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.19 E-value=43 Score=20.51 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=24.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
-..|+++|+|-...+.|.. .+.+.+++. .....||+.|...
T Consensus 44 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNGI---QVLETLRKR-QYSGIIIIVSAKN 84 (134)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHHT-TCCSEEEEEECC-
T ss_pred hcCCCEEEEecCCCCCChH---HHHHHHHhc-CCCCeEEEEeCCC
Confidence 4689999999988887742 233334432 2245565555443
No 222
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=48.68 E-value=55 Score=24.59 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=40.3
Q ss_pred cCCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 15 HNPDLLILDEPTV--------------GLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 15 ~~p~lllLDEPt~--------------gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
..-+++.+|-|-. +-+.....++.+.+.++.++|.-+++|-++.+++.++..
T Consensus 186 ~~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d~~~i~~ly~ 251 (284)
T 2dpm_A 186 RTGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEELYK 251 (284)
T ss_dssp CTTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEESCHHHHHHTT
T ss_pred CCCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCCHHHHHHHc
Confidence 3447889999842 235667778999999987778899999999988876653
No 223
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=47.38 E-value=55 Score=25.95 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARL 63 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~ 63 (128)
.+|++++|-|-+|++...... +..+ +-..++++|.+.....+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~----l~~l--~p~givyvsc~p~tlar 394 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKR----LNRE--KPGVIVYVSCNPETFAR 394 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHH----HHHH--CCSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCccchHHHHHHH----HHhc--CCCcEEEEECChHHHHh
Confidence 579999999999998644433 3333 23457888888876654
No 224
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.27 E-value=47 Score=20.39 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++|+|-...+.|.. .+.+.+++.. ....||+.|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDGI---EVCKQLRQQK-LMFPILMLTA 83 (136)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEEC
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHcCC-CCCCEEEEEC
Confidence 3579999999988887742 3344444432 2344544443
No 225
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=46.85 E-value=48 Score=20.28 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=25.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCC
Q psy6322 12 ALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHY 57 (128)
Q Consensus 12 al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~ 57 (128)
.--..|+++|+|-...+.|.. .+.+.+++.. ..+..||+.|..
T Consensus 43 l~~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 43 ALAHPPDVLISDVNMDGMDGY---ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHSCCSEEEECSSCSSSCHH---HHHHHHHHSTTTTTCCEEEEESC
T ss_pred HhcCCCCEEEEeCCCCCCCHH---HHHHHHHhCCccCCCCEEEEeCC
Confidence 344689999999888777642 2333344421 124455555544
No 226
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=46.84 E-value=50 Score=26.39 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=27.4
Q ss_pred cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHC-CcEEEEEeCCH
Q psy6322 15 HNPDLLILDEPTVGLD--------PVLSKSIWDRLVEMTEN-GKTVMITTHYI 58 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD--------~~~~~~i~~~l~~~~~~-g~tvi~~sH~l 58 (128)
.+|+++++|=-. .+. ......+...|+.++++ +.+||+++|--
T Consensus 353 ~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 353 LGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp TCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred cCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 469999999433 221 12233455566666544 99999999854
No 227
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=46.80 E-value=54 Score=20.93 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=39.9
Q ss_pred HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 13 LLHNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 13 l~~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
+...++.+++| .....+|..+...+..+.+++.++|..+.++.-. +.+.++..
T Consensus 48 ~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~-~~v~~~l~ 101 (125)
T 2ka5_A 48 LNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPN-EKVERVLS 101 (125)
T ss_dssp TTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCC-HHHHHHHH
T ss_pred hhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHHH
Confidence 34467888888 4577899999999999999988778888887654 34544444
No 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=46.45 E-value=40 Score=21.99 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=25.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEAR 62 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~ 62 (128)
.+++++++ -+|+.....+...+.++.+.+..++++.|..+...
T Consensus 80 ~~~~~~i~-----v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 80 EKPDLVVN-----IVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HCCSEEEE-----EEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCCEEEE-----EecCCchhHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 37776653 12222223344455555556889999999988653
No 229
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=46.27 E-value=31 Score=23.88 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 17 PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 17 p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..+|+| +|.++.....+.+.++++.......|+.||-
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 72 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNY 72 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSS
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 4567777 4667777778888888764446677888884
No 230
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=46.16 E-value=20 Score=27.01 Aligned_cols=43 Identities=23% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCCEEEEeCCCCCCC-----HH---------------HHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 16 NPDLLILDEPTVGLD-----PV---------------LSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 16 ~p~lllLDEPt~gLD-----~~---------------~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
.-|++++|-|++|+- |. .+..+++.+.++.+.|..++++|+.+
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 358999999998854 21 12345555555556688888887654
No 231
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=45.89 E-value=26 Score=25.14 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 26 TVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 26 t~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
-+|||+.....+.+++....++|..+.+++=...
T Consensus 30 v~gLdp~~a~al~~m~~aA~~~Gi~l~v~sGyRS 63 (179)
T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRS 63 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCeEEEEEeecC
Confidence 3799999999999999998888888766654443
No 232
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=44.80 E-value=49 Score=19.81 Aligned_cols=39 Identities=8% Similarity=0.306 Sum_probs=22.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++++|-...+.|-. .+.+.+++.. .+..+|+.|.
T Consensus 45 ~~~~dlil~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (120)
T 1tmy_A 45 ELKPDIVTMDITMPEMNGI---DAIKEIMKID-PNAKIIVCSA 83 (120)
T ss_dssp HHCCSEEEEECSCGGGCHH---HHHHHHHHHC-TTCCEEEEEC
T ss_pred hcCCCEEEEeCCCCCCcHH---HHHHHHHhhC-CCCeEEEEeC
Confidence 4579999999887766632 3344444432 2344444443
No 233
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.72 E-value=40 Score=26.99 Aligned_cols=54 Identities=17% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHH
Q psy6322 8 SLAVALLHNPDLLILDEPTV----------GLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEA 61 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~----------gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~ 61 (128)
.+..|-...|.++++||--+ |-|......+.+++.++- ..+.-||.+|..++.+
T Consensus 233 lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 233 LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 45556667899999999632 223445556667766653 2366788999887644
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=44.71 E-value=32 Score=24.98 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=30.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.++.++++||. ..+++.....+.+.+.+.. .+..+|+++....
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFS-SNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcC-CCCeEEEEeCCcc
Confidence 56889999995 4567777777777776642 3566777776654
No 235
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=44.56 E-value=33 Score=24.74 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=30.1
Q ss_pred HHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH----C--CcEEEEEeCCHHHHHH
Q psy6322 9 LAVALLHNPDLLILDEPT-----VGLDPVLSKSIWDRLVEMTE----N--GKTVMITTHYIEEARL 63 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt-----~gLD~~~~~~i~~~l~~~~~----~--g~tvi~~sH~l~~~~~ 63 (128)
+..+...+|.+|++||-- ...++.....+.+.+.++.. . ...||.+|...+.+..
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 334445679999999941 11122233455555555432 2 2336667777765543
No 236
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=44.55 E-value=31 Score=25.51 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVGLD-PVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
+++++++||.- .+. ......+...+.+.. .+..+|++|....
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 78999999973 344 566666777776653 3567888888765
No 237
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.02 E-value=69 Score=25.75 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTV----------GLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEA 61 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~----------gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~ 61 (128)
|-.+..|-...|.++++||--+ +-|......+.++|.++- ..+.-||.+|..++.+
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 4455667778999999999732 224445555666666653 2356788999888743
No 238
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=43.97 E-value=18 Score=27.15 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 11 VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 11 ~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
..+..+.+++++||+-.++.......+.+.+.+.- .+..+|+++.++
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~-~~~~~il~~~~~ 117 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNKL 117 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB-TTEEEEEEESCC
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC-CCeEEEEEcCCC
Confidence 34667889999999876676666666666665432 255566666553
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=43.86 E-value=20 Score=31.00 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC-------H---HHHHHHHHHHHHHHHC-CcEEEEEeCCHHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTVGLD-------P---VLSKSIWDRLVEMTEN-GKTVMITTHYIEEA 61 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~gLD-------~---~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~ 61 (128)
+..+..+....|.++++||+-+.+. . .....+...+...... +..+|.+||+.+.+
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 3445556677899999999944332 1 2223333333333322 57788899987544
No 240
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=43.76 E-value=58 Score=22.85 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=30.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE--NGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~--~g~tvi~~sH 56 (128)
..+|+++|+..+.+.++......+..+...+.. ...++++.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 457899999999888888766666655544432 1357888888
No 241
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=43.75 E-value=6.7 Score=28.75 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHHHHHHHhHHH
Q psy6322 25 PTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEEARLLCAKLY 69 (128)
Q Consensus 25 Pt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~~~~~~d~v~ 69 (128)
|+++.+..+...+++.+.+.... ..+..+.+|..+++++.++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 89999999999999999987654 5566778899999999999965
No 242
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=43.45 E-value=55 Score=23.00 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHH----CCcEEEEEeCCHH
Q psy6322 9 LAVALLHNPDLLILDEPTVGL-----------DPVLSKSIWDRLVEMTE----NGKTVMITTHYIE 59 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gL-----------D~~~~~~i~~~l~~~~~----~g~tvi~~sH~l~ 59 (128)
+..+....|.+|++||.-.-. +......+.+++..+.. .+..+|.+|...+
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 444555679999999974321 33344455666655432 2456677776655
No 243
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.80 E-value=50 Score=26.83 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPT----------VGLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEA 61 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt----------~gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~ 61 (128)
|..+..|-...|.++++||-- .+-+......+.++|.++- ..+.-||.+|..++.+
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 344555667789999999963 2224455566667776653 2356788899888744
No 244
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=41.89 E-value=32 Score=22.44 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=24.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
+..+|++||. ..+++..+..+.+.+.... .+..+|.+|.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~-~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH-RPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS-CSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC-CCEEEEEECC
Confidence 5578888887 4677877777777773322 2344444444
No 245
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.72 E-value=26 Score=25.47 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
+++++++||. ..+.......+...+.+.. .+..+|++|.+..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~-~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYS-NSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccC-CCceEEEEeCChh
Confidence 4889999995 4456666666777776542 3567788887754
No 246
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=41.25 E-value=73 Score=23.08 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 9 LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+-.+.....++++||-. ..++|. .+.++++..++.|..++...|..+++.+..+ ..+|.|.
T Consensus 94 i~~~~~aGad~I~l~~~-~~~~p~---~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~-------~Gad~Ig 154 (229)
T 3q58_A 94 VDALAQAGADIIAFDAS-FRSRPV---DIDSLLTRIRLHGLLAMADCSTVNEGISCHQ-------KGIEFIG 154 (229)
T ss_dssp HHHHHHHTCSEEEEECC-SSCCSS---CHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-------TTCSEEE
T ss_pred HHHHHHcCCCEEEECcc-ccCChH---HHHHHHHHHHHCCCEEEEecCCHHHHHHHHh-------CCCCEEE
Confidence 34567789999999964 445663 4455555555568999999999998865532 3466664
No 247
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=41.04 E-value=69 Score=24.98 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHH-H-------HHHHHHHHHHH---H-HCCcEEEEEeCC
Q psy6322 9 LAVALLHNPDLLILDEPTVGLDPV-L-------SKSIWDRLVEM---T-ENGKTVMITTHY 57 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gLD~~-~-------~~~i~~~l~~~---~-~~g~tvi~~sH~ 57 (128)
+...+...+ ++++||-.+=-... . .+.+.+.+.++ . +.|.++|++++-
T Consensus 176 i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 334444444 99999965421111 1 12234444443 3 448999998874
No 248
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=40.85 E-value=13 Score=27.33 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 16 NPDLLILDEPTVGLDPV----------------LSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~----------------~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
..|++++|-|++|+-.. ....+.+.+.++.+.|..++++|..+
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 45999999999986532 22445555555556688888877544
No 249
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=40.78 E-value=29 Score=28.19 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHHH
Q psy6322 8 SLAVALLHNPDLLILDEPT----------VGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEE 60 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt----------~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~~ 60 (128)
.+..|--..|.+|+|||-- ..+.......++..+...... +..||.+|+..+.
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 4555666789999999961 222234445566666654433 5667778887653
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=40.44 E-value=1.9 Score=32.74 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEe
Q psy6322 34 SKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLA 89 (128)
Q Consensus 34 ~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~ 89 (128)
...+.+.++++. .|+|.+.|+++.+..++|++. .+.+|+++.
T Consensus 24 ~~~l~~~l~~l~---~~Ll~ad~~~~~~~~l~d~v~-----------~~~~g~~~~ 65 (295)
T 1ls1_A 24 EEDLKATLREIR---RALMDADVNLEVARDFVERVR-----------EEALGKQVL 65 (295)
T ss_dssp HHHHHHHHHHHH---HHHHHTTCCHHHHHHHHHHHH-----------HHHHHTTTT
T ss_pred HHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHH-----------HHHcccccc
Confidence 445666666664 689999999999999999966 466777654
No 251
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=40.29 E-value=69 Score=23.87 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCC--------------CCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 16 NPDLLILDEPTVG--------------LDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 16 ~p~lllLDEPt~g--------------LD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
.-+++.+|-|=.. =+.....++.+.+.++.++|.-+++|-++-+++.++..
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~~~~~~lS~~d~~~i~~ly~ 238 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQ 238 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHHHTT
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCHHHHHHhc
Confidence 3478999998532 24456677999999988788899999999988876653
No 252
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=40.25 E-value=57 Score=20.92 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=34.3
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEeCC
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHY 57 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~-g~tvi~~sH~ 57 (128)
|+..+.-+++|-=.+-|++..+..+.++...+... +..|.+..|-
T Consensus 1 ~i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ght 46 (118)
T 2hqs_H 1 MLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHA 46 (118)
T ss_dssp ---CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred CccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 45567778888889999999998888887777654 6788888883
No 253
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=39.83 E-value=60 Score=19.44 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++++|--..+.|.. .+.+.+++ .....+|++|..
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~--~~~~~ii~~s~~ 82 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE--RSTVGIILVTGR 82 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT--TCCCEEEEEESS
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh--cCCCCEEEEECC
Confidence 3579999999888777742 23334443 234556555543
No 254
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=39.75 E-value=20 Score=24.88 Aligned_cols=39 Identities=15% Similarity=0.378 Sum_probs=27.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
+++++++||-=. +++ .+.+.+..+...|..|+++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccc
Confidence 578999999643 443 245566666666899999888544
No 255
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=39.72 E-value=78 Score=22.92 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=42.0
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEE
Q psy6322 9 LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIG 80 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~ 80 (128)
+-.++....+++++|=. ..++|. .+.++++..++.|..++...|..+++.+..+ ..+|.|.
T Consensus 94 i~~~~~~Gad~V~l~~~-~~~~p~---~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~-------~Gad~Ig 154 (232)
T 3igs_A 94 VDALAQAGAAIIAVDGT-ARQRPV---AVEALLARIHHHHLLTMADCSSVDDGLACQR-------LGADIIG 154 (232)
T ss_dssp HHHHHHHTCSEEEEECC-SSCCSS---CHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-------TTCSEEE
T ss_pred HHHHHHcCCCEEEECcc-ccCCHH---HHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh-------CCCCEEE
Confidence 34567788999999954 455663 4455555555568999999999998865532 3466664
No 256
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.61 E-value=50 Score=26.60 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---H-CCcEEEEEeCCHHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPT----------VGLDPVLSKSIWDRLVEMT---E-NGKTVMITTHYIEEA 61 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt----------~gLD~~~~~~i~~~l~~~~---~-~g~tvi~~sH~l~~~ 61 (128)
|..+..|-...|.++++||-- .+-+......+.+++..+- . .+.-||.+|..++.+
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 444556667889999999951 1223444555666666653 2 356788899887643
No 257
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=39.33 E-value=64 Score=19.65 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc-EEEEEeCCH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~-tvi~~sH~l 58 (128)
-..|+++|+|--..+.|-. .+.+.+++...... .|+++++.-
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~~~~~~~ii~ls~~~~ 88 (130)
T 1dz3_A 46 EKRPDILLLDIIMPHLDGL---AVLERIRAGFEHQPNVIMLTAFGQ 88 (130)
T ss_dssp HHCCSEEEEESCCSSSCHH---HHHHHHHHHCSSCCEEEEEEETTC
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHhcCCCCCcEEEEecCCC
Confidence 3579999999887777642 33444444212234 345555543
No 258
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.04 E-value=61 Score=26.51 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHHH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTV----------GLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEEA 61 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~----------gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~ 61 (128)
|-.+..|-...|.++++||--+ |-+......+.++|.++- ..+.-||.+|..++.+
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 4456667778899999999843 223344555666777663 2256678888877643
No 259
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=38.73 E-value=65 Score=19.52 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=21.9
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 16 NPDLLILDEPTVG-LDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 16 ~p~lllLDEPt~g-LD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
.|+++|+|--..+ .|.. .+.+.+++.. ....||++|.
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 87 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREID-PNMPIVYISG 87 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHC-TTCCEEEEES
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcC-CCCCEEEEeC
Confidence 7999999987775 6642 3444444432 2444555444
No 260
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.45 E-value=65 Score=19.47 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=24.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l 58 (128)
-..|+++|+|-...+.|.. .+.+.+++.. .....||+.|-..
T Consensus 45 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSGL---ALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HSCCSEEEEESBCSSSBHH---HHHHHHHHSCCSSCCEEEEEECC-
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhhccCCCCEEEEECCc
Confidence 4679999999988887742 3344444431 2345565555443
No 261
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.41 E-value=73 Score=25.53 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---H-CCcEEEEEeCCHHHH
Q psy6322 8 SLAVALLHNPDLLILDEP----------TVGLDPVLSKSIWDRLVEMT---E-NGKTVMITTHYIEEA 61 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEP----------t~gLD~~~~~~i~~~l~~~~---~-~g~tvi~~sH~l~~~ 61 (128)
.+..|-...|.++++||- ..+-|....+.+.+++.++- . .+.-||.+|..++.+
T Consensus 257 lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 445566678999999996 23345455555666666553 2 367788999887643
No 262
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=37.36 E-value=56 Score=23.69 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=25.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 17 PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 17 p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..+|.|= |.++...+.+.+.+++......+-|+.||-
T Consensus 84 ~~~ilIDt---g~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~ 121 (270)
T 4eyb_A 84 GRVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHA 121 (270)
T ss_dssp TEEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSS
T ss_pred CEEEEEeC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 34566674 457777778888777754334555788884
No 263
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=37.15 E-value=96 Score=21.00 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=23.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
..|+++|+|--..+.|.. .+.+.+++.. ....||+.|.
T Consensus 42 ~~~dlvllD~~lp~~~g~---~~~~~lr~~~-~~~~ii~lt~ 79 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGY---EICRMIKETR-PETWVILLTL 79 (220)
T ss_dssp SCCSEEEEESBCSSSBHH---HHHHHHHHHC-TTSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCcEEEEEc
Confidence 789999999888777643 3344444432 3455555443
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=37.01 E-value=8.7 Score=28.79 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=25.2
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHHH----HCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVGLDPV-LSKSIWDRLVEMT----ENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~-~~~~i~~~l~~~~----~~g~tvi~~sH~l~ 59 (128)
+|.++++||.-.-.+.. ....+..++.... ..+..+|++|+..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 36699999975432111 3344555554432 33678899998874
No 265
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=36.79 E-value=66 Score=22.37 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=32.6
Q ss_pred hcCCCEEEEeCCCCCCCH-------------------HHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 14 LHNPDLLILDEPTVGLDP-------------------VLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~-------------------~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
+.+|++++||=|..---+ ..++.+.+.++++.+.|..|+++.--++..
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~ 91 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDL 91 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHH
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHH
Confidence 368999999988653221 133446677777777788899988777543
No 266
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=36.78 E-value=8.8 Score=26.27 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=32.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+-+++++||.=.-+|......+..++.........++++.--.+.+..++++
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 195 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAER 195 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHH
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHH
Confidence 45689999997433333334444444444333345677776666777777776
No 267
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=35.94 E-value=1e+02 Score=20.96 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=22.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
-..|+++|+|--..+.|.. .+.+.+++.. .+..||+.|
T Consensus 49 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~~-~~~~ii~lt 86 (233)
T 1ys7_A 49 ENRPDAIVLDINMPVLDGV---SVVTALRAMD-NDVPVCVLS 86 (233)
T ss_dssp HSCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEE
Confidence 4679999999887777743 2333444332 344555544
No 268
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=35.93 E-value=71 Score=19.18 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=23.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++|+|--..+.|-. .+.+.+++. .....+|+.|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~ 83 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKVI-DENIRVIIMTA 83 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHHH-CTTCEEEEEES
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHHh-CCCCCEEEEEc
Confidence 4579999999887777642 333344443 23455555544
No 269
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.73 E-value=82 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=23.8
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
--..|+++|+|--..+.|.. .+.+.+++.. ....||+.|..
T Consensus 63 ~~~~~dlii~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~~ 103 (150)
T 4e7p_A 63 EKESVDIAILDVEMPVKTGL---EVLEWIRSEK-LETKVVVVTTF 103 (150)
T ss_dssp TTSCCSEEEECSSCSSSCHH---HHHHHHHHTT-CSCEEEEEESC
T ss_pred hccCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCeEEEEeCC
Confidence 34679999999888777642 2333344322 24455555443
No 270
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.70 E-value=77 Score=19.48 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=24.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++|+|--..+.|-. .+.+.+++. .....||+.|..
T Consensus 47 ~~~~dlvilD~~lp~~~g~---~~~~~l~~~-~~~~~ii~ls~~ 86 (133)
T 3b2n_A 47 EYNPNVVILDIEMPGMTGL---EVLAEIRKK-HLNIKVIIVTTF 86 (133)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHT-TCSCEEEEEESC
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHHH-CCCCcEEEEecC
Confidence 4579999999877777642 333344442 234556555543
No 271
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=35.46 E-value=51 Score=24.63 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=23.9
Q ss_pred ChHhHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCH
Q psy6322 1 GGQQRRTSLAVALLHNP--------------DLLILDEPTV-GLDP 31 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--------------~lllLDEPt~-gLD~ 31 (128)
+|..|.-+|.+++-... -.+++||+++ .|+.
T Consensus 204 ~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~ 249 (289)
T 1ne7_A 204 TGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKV 249 (289)
T ss_dssp CSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBH
T ss_pred cCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhccc
Confidence 47888888888887654 3899999997 5653
No 272
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=35.32 E-value=76 Score=19.32 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=40.3
Q ss_pred HHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 11 VALLHN-PDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 11 ~al~~~-p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
.++... ++.+++| .....+|..+...+.++.+++.++|..+.++.-.. .+.++..
T Consensus 36 ~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~-~v~~~l~ 92 (116)
T 1th8_B 36 DVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSP-AVKRLFD 92 (116)
T ss_dssp HHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCH-HHHHHHH
T ss_pred HHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCCH-HHHHHHH
Confidence 334333 7888888 45778899999999999999888888888876653 3444443
No 273
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=35.31 E-value=79 Score=19.52 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.3
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy6322 15 HNPDLLILDEPTVGLDP 31 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~ 31 (128)
..|+++|+|=-..+.|-
T Consensus 51 ~~~dlvllD~~mp~~~G 67 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDG 67 (133)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCCEEEEeCCCCCCCh
Confidence 57999999988777774
No 274
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=35.29 E-value=84 Score=19.80 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=25.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
-..|+++|+|-...+.|.. .+.+.+++.. ....||++|...+
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSY-PDIERVVISGYAD 90 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHC-TTSEEEEEECGGG
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCcEEEEecCCC
Confidence 3579999999988887743 3344444432 3556666655443
No 275
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=35.17 E-value=57 Score=23.82 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=24.2
Q ss_pred ChHhHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHH
Q psy6322 1 GGQQRRTSLAVALLHNP--------------DLLILDEPTV-GLDPV 32 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p--------------~lllLDEPt~-gLD~~ 32 (128)
+|..|.-+|.+++-... ..+++||.++ .|+..
T Consensus 204 ~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~ 250 (266)
T 1fs5_A 204 LGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVK 250 (266)
T ss_dssp CSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHH
T ss_pred cChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccc
Confidence 57888888888887543 5799999997 56543
No 276
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=34.95 E-value=38 Score=23.31 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=25.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..+|+| .|..+.....+.+.++++.....+.|+.||-
T Consensus 33 ~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 69 (227)
T 3iog_A 33 GVTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTNY 69 (227)
T ss_dssp CEEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSSS
T ss_pred eEEEEE---CCCChHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 467777 4566777777877777743335667888885
No 277
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=34.63 E-value=28 Score=23.68 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=34.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+-+++++||.=.-+|......+..++..+......++++.--.+.+.+++.+
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNS 197 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHH
Confidence 46789999998654454444555555554433456677777766777777765
No 278
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=34.60 E-value=42 Score=23.48 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHH--CCcEEEEEeCCHH
Q psy6322 34 SKSIWDRLVEMTE--NGKTVMITTHYIE 59 (128)
Q Consensus 34 ~~~i~~~l~~~~~--~g~tvi~~sH~l~ 59 (128)
..++.+.+.++.+ .+.+|++|||..-
T Consensus 128 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~ 155 (208)
T 2a6p_A 128 NDRADSAVALALEHMSSRDVLFVSHGHF 155 (208)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCHHH
Confidence 3456666777653 5789999999754
No 279
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=34.37 E-value=26 Score=29.00 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=33.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
+.+|+++++|-+.+. .+.+...+.+..+.|..++++..+++..
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~~g~~lvii~~~I~~~ 255 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQTGKPLLIIAEDVEGE 255 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHTTTCCEEEEESCBCHH
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHhcCCCEEEEcCCccHH
Confidence 468999999998664 4457788888777799999998877544
No 280
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=34.17 E-value=79 Score=19.16 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=10.1
Q ss_pred hcCCCEEEEeCCCCCCC
Q psy6322 14 LHNPDLLILDEPTVGLD 30 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD 30 (128)
-.+|+++|+|-...+.|
T Consensus 49 ~~~~dlvi~d~~l~~~~ 65 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMN 65 (130)
T ss_dssp TCCCSEEEECCC-----
T ss_pred cCCCCEEEEecCCCCCC
Confidence 45799999997766544
No 281
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=33.96 E-value=31 Score=22.55 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 9 LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
+..+--..|+++|+|=-.-|.|-.. +.+.+ ++.+..||+.|=
T Consensus 46 l~~~~~~~~DlvllDi~mP~~~G~e---l~~~l---r~~~ipvI~lTa 87 (123)
T 2lpm_A 46 LDIARKGQFDIAIIDVNLDGEPSYP---VADIL---AERNVPFIFATG 87 (123)
T ss_dssp HHHHHHCCSSEEEECSSSSSCCSHH---HHHHH---HHTCCSSCCBCT
T ss_pred HHHHHhCCCCEEEEecCCCCCCHHH---HHHHH---HcCCCCEEEEec
Confidence 3344457899999999888888532 22333 334566655553
No 282
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.81 E-value=89 Score=19.63 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++|+|--..+.|.. .+.+.+++.. ....||+.|-.
T Consensus 59 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~ 98 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDGA---QVAAAVRSYE-LPTRVLLISAH 98 (152)
T ss_dssp HHCCSEEEEETTCSSSCHH---HHHHHHHHTT-CSCEEEEEESC
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCeEEEEEcc
Confidence 4689999999888777742 2333333322 24445544443
No 283
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=33.71 E-value=1.4 Score=35.47 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=17.3
Q ss_pred ChHhHHHHHHHHHhcCCCEEE
Q psy6322 1 GGQQRRTSLAVALLHNPDLLI 21 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lll 21 (128)
|||+|| ||++++.+|++..
T Consensus 296 gg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 296 GVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHH--hhhhhcCCCCccC
Confidence 689999 9999999999876
No 284
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.45 E-value=91 Score=19.65 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=23.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..|+++|+|-...+.+.. .+.+.+++.. .+..||+.|..
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~~-~~~pii~ls~~ 84 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILALD-PDLPMILVTGH 84 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHHC-TTSCEEEEECG
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhC-CCCCEEEEECC
Confidence 469999999888777643 3444444432 34555555543
No 285
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=33.38 E-value=81 Score=19.04 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=23.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++|+|--..+.|-. .+.+.+++.. ....||+.|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~ 84 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGV---ELLRNLGDLK-INIPSIVITGH 84 (126)
T ss_dssp GCCSEEEEEECCSTTSCHH---HHHHHHHHTT-CCCCEEEEECT
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHhcC-CCCCEEEEECC
Confidence 3469999999877777642 2333444322 34445554443
No 286
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=33.17 E-value=92 Score=24.51 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=33.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
-||+-|+-+..-|+..+..+.+++....+.|..|.++|.+-+.-+++
T Consensus 316 tLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL 362 (386)
T 2vgn_A 316 YLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL 362 (386)
T ss_dssp EEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH
T ss_pred EEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH
Confidence 45666666665688888886666666667788998888877766555
No 287
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.76 E-value=87 Score=19.23 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=24.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH~ 57 (128)
-..|+++|+|--..+.|.. .+.+.+++. ......||+.|..
T Consensus 49 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 49 KGFSGVVLLDIMMPGMDGW---DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp TCCCEEEEEESCCSSSCHH---HHHHHHHHTTCCTTEEEEEEECT
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCCEEEEECC
Confidence 4579999999887776642 334444441 1124566666554
No 288
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=32.76 E-value=49 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHhH
Q psy6322 35 KSIWDRLVEMTE-NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 35 ~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.++.+.+.++.+ .+.+|+++||..- +..+...
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~-i~~l~~~ 118 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL-VGYLVAE 118 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH-HHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH-HHHHHHH
Confidence 466666776653 5789999999854 4444433
No 289
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=32.67 E-value=28 Score=26.31 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=28.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.+++++|+||. -.+...+...+.+.+.+. ..+..+|++|++.+
T Consensus 107 ~~~kvviIdea-d~l~~~a~naLLk~lEep-~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDA-ALLTDAAANALLKTLEEP-PAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCG-GGBCHHHHHHHHHHHTSC-CTTEEEEEEESCGG
T ss_pred CCcEEEEECch-hhcCHHHHHHHHHHhcCC-CCCeEEEEEeCChH
Confidence 35689999996 345666666666665543 22466788888874
No 290
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=32.65 E-value=39 Score=22.28 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.3
Q ss_pred hcCCCEEEEeCCCCCCC
Q psy6322 14 LHNPDLLILDEPTVGLD 30 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD 30 (128)
..+.+++++.+|..++.
T Consensus 74 F~~rrlV~v~~~~~~~~ 90 (140)
T 1jql_B 74 FASRQTLLLLLPENGPN 90 (140)
T ss_dssp TCCCEEEEEECCTTCSC
T ss_pred CCCCEEEEEECCCCCCC
Confidence 34445555555554343
No 291
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=32.65 E-value=95 Score=23.19 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=27.3
Q ss_pred CCC--EEEEeCCCC----C--CC-HHHHHHHHHHHHHHHHC-CcEEEEEeCCH
Q psy6322 16 NPD--LLILDEPTV----G--LD-PVLSKSIWDRLVEMTEN-GKTVMITTHYI 58 (128)
Q Consensus 16 ~p~--lllLDEPt~----g--LD-~~~~~~i~~~l~~~~~~-g~tvi~~sH~l 58 (128)
+++ ++++|--.. + -+ ......+...|+.++++ +.+||+++|--
T Consensus 179 ~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~ 231 (315)
T 3bh0_A 179 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 231 (315)
T ss_dssp SSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecC
Confidence 678 999996532 1 11 12334455666666544 99999999953
No 292
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=32.52 E-value=1.2e+02 Score=20.54 Aligned_cols=40 Identities=25% Similarity=0.152 Sum_probs=23.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
--..|+++|+|--..+.|.. .+.+.+++.. ....||+.|.
T Consensus 43 ~~~~~dlvllD~~l~~~~g~---~~~~~lr~~~-~~~~ii~ls~ 82 (225)
T 1kgs_A 43 LNEPFDVVILDIMLPVHDGW---EILKSMRESG-VNTPVLMLTA 82 (225)
T ss_dssp HHSCCSEEEEESCCSSSCHH---HHHHHHHHTT-CCCCEEEEES
T ss_pred hcCCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEeC
Confidence 34689999999888777742 2333344332 2444554443
No 293
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=32.44 E-value=88 Score=19.16 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++|+|--..+.|-. .+.+.+++.. .+..+|++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGT---ELLEKAHKLR-PGMKKIMVTG 83 (132)
T ss_dssp HSCCSEEEECSBCSSSBHH---HHHHHHHHHC-TTSEEEEEES
T ss_pred cCCCCEEEEecCCCCCchH---HHHHHHHhhC-CCCcEEEEec
Confidence 4679999999887777642 2333444432 3455555443
No 294
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=32.27 E-value=41 Score=23.78 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHH-----CCcEEEEEeCCHHHHHHHHhH
Q psy6322 34 SKSIWDRLVEMTE-----NGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 34 ~~~i~~~l~~~~~-----~g~tvi~~sH~l~~~~~~~d~ 67 (128)
..++...+.++.. .+.+|++|||-. .+..+...
T Consensus 155 ~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~-~i~~l~~~ 192 (237)
T 3r7a_A 155 STRIKAEIDKISEEAAKDGGGNVLVVVHGL-LITTLIEM 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcCHH-HHHHHHHH
Confidence 3456666666642 488999999964 34444444
No 295
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=32.22 E-value=42 Score=23.73 Aligned_cols=48 Identities=25% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 5 RRTSLAVALLH---NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 5 qrv~ia~al~~---~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
+|+++..||+. +-+++++|+- .++....+.+.+++..+.- +..++++.
T Consensus 74 rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~~-~~~~LiV~ 124 (175)
T 2ftc_D 74 RALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRRW-GDSVLLVD 124 (175)
T ss_pred HHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCCC-CCceEEEE
Confidence 56777777754 5678998874 4455567778888877642 23344444
No 296
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.20 E-value=95 Score=19.50 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=23.7
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
--..|+++|+|--..+.|.. .+.+.+++.. .+..||++|.
T Consensus 48 ~~~~~dlii~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~ 87 (153)
T 3cz5_A 48 RETTPDIVVMDLTLPGPGGI---EATRHIRQWD-GAARILIFTM 87 (153)
T ss_dssp HTTCCSEEEECSCCSSSCHH---HHHHHHHHHC-TTCCEEEEES
T ss_pred hcCCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCeEEEEEC
Confidence 34579999999888777642 3444444432 2344554443
No 297
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=31.96 E-value=87 Score=18.96 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=24.9
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCH
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHYI 58 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l 58 (128)
--.+|+++|+|-...+.|.. .+.+.+++... ....|+++|..-
T Consensus 47 ~~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~~~~~ 90 (132)
T 3lte_A 47 STFEPAIMTLDLSMPKLDGL---DVIRSLRQNKVANQPKILVVSGLD 90 (132)
T ss_dssp HHTCCSEEEEESCBTTBCHH---HHHHHHHTTTCSSCCEEEEECCSC
T ss_pred HhcCCCEEEEecCCCCCCHH---HHHHHHHhcCccCCCeEEEEeCCC
Confidence 34689999999888877642 23333333221 234555555543
No 298
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=31.80 E-value=49 Score=27.32 Aligned_cols=47 Identities=11% Similarity=0.268 Sum_probs=33.9
Q ss_pred hcCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 14 LHNPDLLILDEP-------------TVGLDP------VLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 14 ~~~p~lllLDEP-------------t~gLD~------~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+.+|+++++|-| .+..+. ..++.+...+.++.+.|..++++.-+++.
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 296 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDD 296 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccH
Confidence 468999999999 333332 23344677888887889999999887754
No 299
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=31.42 E-value=1e+02 Score=19.61 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
.|+++|+|--..+.|.. .+.+.+++....-..|+++++.
T Consensus 83 ~~dliilD~~l~~~~g~---~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGI---TCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp GCCEEEECSSCSSSCHH---HHHHHHHHHCTTCCEEEEESCC
T ss_pred CCCEEEEeccCCCccHH---HHHHHHHhhCCCCcEEEEeccC
Confidence 78999999888887742 3344444433223344455443
No 300
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=31.38 E-value=46 Score=23.18 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHH--CCcEEEEEeCCHH
Q psy6322 34 SKSIWDRLVEMTE--NGKTVMITTHYIE 59 (128)
Q Consensus 34 ~~~i~~~l~~~~~--~g~tvi~~sH~l~ 59 (128)
..++.+.+.++.+ .+.+|++|||-.-
T Consensus 126 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~ 153 (207)
T 1h2e_A 126 QQRALEAVQSIVDRHEGETVLIVTHGVV 153 (207)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCHHH
Confidence 3445666766653 3789999999753
No 301
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=31.34 E-value=82 Score=21.08 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=22.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
..|+++|+|--..+.|.. .+.+.+++.. .+..||+.|.
T Consensus 47 ~~~dlvl~D~~lp~~~g~---~~~~~l~~~~-~~~~ii~ls~ 84 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSGI---ELQEQLTAIS-DGIPIVFITA 84 (208)
T ss_dssp TSCEEEEEESCCSSSCHH---HHHHHHHHTT-CCCCEEEEES
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEeC
Confidence 469999999877777743 2333344332 3455555544
No 302
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=31.26 E-value=75 Score=23.63 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----------HCCcEEEEEeCC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMT----------ENGKTVMITTHY 57 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~----------~~g~tvi~~sH~ 57 (128)
+..+|+|||. ..+.+..+..+...+.+.. ..+..+|.+|+.
T Consensus 96 ~~g~L~LDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEI-GDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESC-TTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEecc-ccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 4679999995 4567777777887777642 123567777775
No 303
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=31.08 E-value=47 Score=22.22 Aligned_cols=38 Identities=13% Similarity=-0.072 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++|+|-...+.|- . +.+.+++.. ....||+.|.
T Consensus 50 ~~~~dlvl~D~~mp~~~g--~--l~~~~~~~~-~~~~ii~lt~ 87 (196)
T 1qo0_D 50 DVPVDVVFTSIFQNRHHD--E--IAALLAAGT-PRTTLVALVE 87 (196)
T ss_dssp SSCCSEEEEECCSSTHHH--H--HHHHHHHSC-TTCEEEEEEC
T ss_pred CCCCCEEEEeCCCCccch--H--HHHHHhccC-CCCCEEEEEc
Confidence 457999999988877662 1 444444432 3455555443
No 304
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=30.78 E-value=11 Score=26.75 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=34.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
..+-+++++||-=.-+|......+..++..+.....++++|.--...+..++.+
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHH
Confidence 346679999997432332234445555544434456778888877888888877
No 305
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=30.54 E-value=1.2e+02 Score=20.31 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=14.7
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy6322 14 LHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~ 31 (128)
-..|+++|+|--..+.|.
T Consensus 49 ~~~~dlvllD~~lp~~~g 66 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNG 66 (215)
T ss_dssp HHCCSEEEEETTSTTSCH
T ss_pred hcCCCEEEEeCCCCCCcH
Confidence 457999999988777774
No 306
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=30.48 E-value=1.3e+02 Score=20.46 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=22.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HCCcEEEEEeC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMT---ENGKTVMITTH 56 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~---~~g~tvi~~sH 56 (128)
.|+++|+|=-..+.|-. .+.+.|++.. .....||++|-
T Consensus 119 ~~dlillD~~lp~~~G~---el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGY---EATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCHH---HHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCCEEEEcCCCCCCCHH---HHHHHHHhhhhhcCCCCcEEEEEC
Confidence 79999999888777743 2333444431 23445555554
No 307
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=30.44 E-value=95 Score=18.96 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
-..|+++|+|--..+.|.. .+.+.+++.. ....||+.|...
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~~ 89 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGGL---EMLDRIKAGG-AKPYVIVISAFS 89 (137)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHTT-CCCEEEECCCCC
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCcEEEEecCc
Confidence 4689999999888777643 2333344322 345565555443
No 308
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=30.40 E-value=93 Score=18.83 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.4
Q ss_pred HhcCCCEEEEeCCCCCCCH
Q psy6322 13 LLHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~ 31 (128)
--..|+++|+|=-..+.|-
T Consensus 43 ~~~~~dlvllD~~~p~~~g 61 (122)
T 3gl9_A 43 SEFTPDLIVLXIMMPVMDG 61 (122)
T ss_dssp TTBCCSEEEECSCCSSSCH
T ss_pred HhcCCCEEEEeccCCCCcH
Confidence 3467999999988888774
No 309
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=30.32 E-value=73 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 27 VGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 27 ~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
.|+|+.....+.+.|.++.++|.-|++|+
T Consensus 67 ~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 67 VGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 68999999999999999988887666655
No 310
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=30.24 E-value=1.9e+02 Score=22.44 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=42.9
Q ss_pred CCCEEEEeCCCC-CC-CHHHHHHHHHHHHHHHHC--CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEe
Q psy6322 16 NPDLLILDEPTV-GL-DPVLSKSIWDRLVEMTEN--GKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLA 89 (128)
Q Consensus 16 ~p~lllLDEPt~-gL-D~~~~~~i~~~l~~~~~~--g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~ 89 (128)
..++++.|-|.. .+ +......++..+.+..+. |..+.++|.+.+....+. ..+++-..+.||.+-+
T Consensus 300 ~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~~~~g--------~~~~~~~~l~nG~l~~ 369 (384)
T 3ldg_A 300 INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTDFEQKFG--------RKADKKRKLYNGSLKV 369 (384)
T ss_dssp CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTTHHHHHT--------SCCSEEEEEEETTEEE
T ss_pred CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHHHHHHhC--------CCccceeEEecCCEEE
Confidence 468999999974 23 334455566666554444 777777777777655443 2366677888888754
No 311
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=30.17 E-value=1.1e+02 Score=19.44 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEe
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITT 55 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~s 55 (128)
-..|+++|+|--..+.|.. .+.+.+++... ....||++|
T Consensus 49 ~~~~dlii~D~~l~~~~g~---~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDGY---ALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp TCCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhCCCcCCCCEEEEE
Confidence 4679999999888887742 23334444321 344555555
No 312
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=30.10 E-value=16 Score=25.56 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=34.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
..+-+++++||-=.-+|......+..++..+......++++.--...+..++.+
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS 218 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHH
Confidence 345789999997433332334455565555544456777787777777777765
No 313
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=29.95 E-value=91 Score=18.56 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH 56 (128)
-..|+++|+|-...+.|-. .+.+.+++.. .....+|+.|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 43 ENKPDLILMDIQLPEISGL---EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHCCSEEEEESBCSSSBHH---HHHHHHHHSTTTTTSCEEEEC-
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHcCccccCCcEEEEEC
Confidence 3579999999988877743 2344444421 12445555544
No 314
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.66 E-value=98 Score=18.86 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=21.8
Q ss_pred hcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHCCcEE-EEEeCC
Q psy6322 14 LHNPDLLILDEPTV-----GLDPVLSKSIWDRLVEMTENGKTV-MITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~-----gLD~~~~~~i~~~l~~~~~~g~tv-i~~sH~ 57 (128)
-..|+++|+|-... +.+.. .+.+.+++.. ....| +++++.
T Consensus 45 ~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~-~~~~ii~ls~~~ 90 (140)
T 2qr3_A 45 EENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQY-RDLPVVLFTAYA 90 (140)
T ss_dssp HSCEEEEEEETTTTC-----CCHH---HHHHHHHHHC-TTCCEEEEEEGG
T ss_pred cCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhC-cCCCEEEEECCC
Confidence 35799999998776 55532 3334444432 23444 444443
No 315
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=29.60 E-value=94 Score=18.61 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 12 ALLHNP-DLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 12 al~~~p-~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
++...| +.+++| .....+|..+...+.++.+++.++|..+.++.-.. .+.++..
T Consensus 38 ~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~-~v~~~l~ 93 (110)
T 1sbo_A 38 FISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKE-SISRILK 93 (110)
T ss_dssp HHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCH-HHHHHHH
T ss_pred HHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHH
Confidence 333444 788999 56788999999999999999988899988876543 3444443
No 316
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=29.50 E-value=67 Score=26.43 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=33.9
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 14 LHNPDLLILDEP-------------TVGLDPV------LSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 14 ~~~p~lllLDEP-------------t~gLD~~------~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+.+|+++++|-| .+..+.. .++.+...+.++.+.|..++++.-+++.
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 297 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDD 297 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCH
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCH
Confidence 468999999999 4444432 2344677788877889999999877743
No 317
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=29.49 E-value=31 Score=27.91 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred cCCCEEEEeCCCCCCC-----HHH---------------HHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 15 HNPDLLILDEPTVGLD-----PVL---------------SKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD-----~~~---------------~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
...|++++|=|++|.- |.. +..+.+...++.+.|..++++|-
T Consensus 174 ~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4578999999998864 222 12333334444456888888654
No 318
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=29.45 E-value=9.5 Score=25.21 Aligned_cols=44 Identities=14% Similarity=-0.030 Sum_probs=22.7
Q ss_pred CCCEEEEeCCCCC----CCHHHHHHHHHHHHHHHHC-CcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVG----LDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~g----LD~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~ 59 (128)
+|.++++||--.- -+......+.+.+..+... ...+|.++...+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 5779999984211 0011123344555555444 456666666443
No 319
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=29.39 E-value=1.1e+02 Score=19.24 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.7
Q ss_pred CCCEEEEeCCCCCCCH
Q psy6322 16 NPDLLILDEPTVGLDP 31 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~ 31 (128)
.|+++|+|--..+.|-
T Consensus 61 ~~dlillD~~lp~~~g 76 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDG 76 (149)
T ss_dssp CCSEEEECSCCSSSCH
T ss_pred CCCEEEEeCCCCCCcH
Confidence 6999999988877774
No 320
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=29.34 E-value=1.5e+02 Score=20.83 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEeCCHHH
Q psy6322 9 LAVALLHNPDLLILDEP----------TVGLDPVLSKSIWDRLVEMT----ENGKTVMITTHYIEE 60 (128)
Q Consensus 9 ia~al~~~p~lllLDEP----------t~gLD~~~~~~i~~~l~~~~----~~g~tvi~~sH~l~~ 60 (128)
+..+....|.++++||- ..+-.......+.+++..+- ..+..||.+|+..+.
T Consensus 97 ~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp HHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 33444556889999996 11111222233444444442 235678888888753
No 321
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=29.30 E-value=76 Score=19.58 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=11.4
Q ss_pred HhcCCCEEEEeCCCCCCC
Q psy6322 13 LLHNPDLLILDEPTVGLD 30 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD 30 (128)
--..|+++|+|-...+.|
T Consensus 43 ~~~~~dlvi~D~~l~~~~ 60 (140)
T 3n53_A 43 DHHHPDLVILDMDIIGEN 60 (140)
T ss_dssp HHHCCSEEEEETTC----
T ss_pred hcCCCCEEEEeCCCCCCc
Confidence 346899999998766654
No 322
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=29.07 E-value=1.4e+02 Score=23.24 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=32.8
Q ss_pred hHHHHHHHHH--h--cCCCEEEEeCCCCCC-----C--H--------HHHHHHHHHHHHH----HHCCcEEEEEeCCHH
Q psy6322 4 QRRTSLAVAL--L--HNPDLLILDEPTVGL-----D--P--------VLSKSIWDRLVEM----TENGKTVMITTHYIE 59 (128)
Q Consensus 4 ~qrv~ia~al--~--~~p~lllLDEPt~gL-----D--~--------~~~~~i~~~l~~~----~~~g~tvi~~sH~l~ 59 (128)
++.+.++..+ + .+|+++++|=-++=. + + ...+.+.+.++++ .+.+.++|++-|-..
T Consensus 95 ~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 95 QLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 3335566655 3 479999999654422 1 1 1233455555553 356999999999866
No 323
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=29.02 E-value=34 Score=25.83 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=23.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 17 PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 17 p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.+++|+||+= .+...+...+.+.+.+.- ....+|++|++++
T Consensus 83 ~kvviIdead-~lt~~a~naLLk~LEep~-~~t~fIl~t~~~~ 123 (305)
T 2gno_A 83 RKYVIVHDCE-RMTQQAANAFLKALEEPP-EYAVIVLNTRRWH 123 (305)
T ss_dssp SEEEEETTGG-GBCHHHHHHTHHHHHSCC-TTEEEEEEESCGG
T ss_pred ceEEEeccHH-HhCHHHHHHHHHHHhCCC-CCeEEEEEECChH
Confidence 4677777763 344555555555555432 2455677777663
No 324
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=28.92 E-value=1.1e+02 Score=19.17 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.5
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy6322 14 LHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~ 31 (128)
-..|+++|+|--..+.|.
T Consensus 57 ~~~~dliilD~~l~~~~g 74 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTG 74 (152)
T ss_dssp TTCBEEEEECSBCSSSBH
T ss_pred cCCCCEEEEeCCCCCCcH
Confidence 357999999988877764
No 325
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=28.81 E-value=1e+02 Score=18.86 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=27.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEeCCHH
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH~l~ 59 (128)
--..|+++|+|--..+.|.. .+.+.+++. ......||+.|-..+
T Consensus 47 ~~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 47 ARRPYAAMTVDLNLPDQDGV---SLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HHSCCSEEEECSCCSSSCHH---HHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred HhCCCCEEEEeCCCCCCCHH---HHHHHHHhCcccCCCCEEEEecCCC
Confidence 34679999999888887742 333444442 123567777766554
No 326
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=28.42 E-value=95 Score=18.30 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=14.1
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy6322 14 LHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~ 31 (128)
-..|+++++|--..+.|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g 60 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDG 60 (121)
T ss_dssp HHCCSEEEEESEETTEEH
T ss_pred cCCCCEEEEeCCCCCCcH
Confidence 457999999987766653
No 327
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=28.07 E-value=1.3e+02 Score=22.84 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHhcCCCEEEE-----eCCCC--CCCHHHHHHHHHHHHHHHHCCcEE-EEEeCCHHHHHHHH
Q psy6322 9 LAVALLHNPDLLIL-----DEPTV--GLDPVLSKSIWDRLVEMTENGKTV-MITTHYIEEARLLC 65 (128)
Q Consensus 9 ia~al~~~p~lllL-----DEPt~--gLD~~~~~~i~~~l~~~~~~g~tv-i~~sH~l~~~~~~~ 65 (128)
+..|+-.+|.-.-| +|-|+ |||. ....+.+.+.++.+.|.-| +++--+.+.++.-.
T Consensus 79 i~ial~~kP~~vtLVPEkreE~TTegGldv-~~~~L~~~i~~L~~~GIrVSLFIDpd~~qi~aA~ 142 (260)
T 3o6c_A 79 LNLALKLKPHRVTLVPEKREELTTEGGLCL-NHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSK 142 (260)
T ss_dssp HHHHHHHCCSEEEECCCSGGGBCTTSSBCT-TCTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCCCccCCCCChhh-CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 44567778887666 45565 8999 8888999999999888654 88888888776543
No 328
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=27.78 E-value=1.3e+02 Score=19.83 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 4 QRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
.|+-.+- ..+.+.++++-|+- ||-+ ..+..+.+++..+.+...-+|++.+
T Consensus 22 ~Q~~~l~-~~~~g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~~~g~id~vvv~~ 71 (143)
T 3ilx_A 22 NQVKYLE-EQVKEYDLVITDIG-SGLN-MKRKGFLKLLRMILNNEVSRVITAY 71 (143)
T ss_dssp HHHHHHH-HHCSCCSEEEEEES-CTTC-TTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHH-HHhCCCeEEEEcCc-cccc-CCcHHHHHHHHHHHhCCCCEEEEEe
Confidence 3444443 34447777666666 8888 5677788888776543344555544
No 329
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=27.68 E-value=1.9e+02 Score=21.51 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHH-----HCCcEEEEEeCCHH
Q psy6322 8 SLAVALLHNPDLLILDEPTV-------GLDPVLSKSIWDRLVEMT-----ENGKTVMITTHYIE 59 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~-------gLD~~~~~~i~~~l~~~~-----~~g~tvi~~sH~l~ 59 (128)
.+..+-..+|.+|++||--+ +........+.+++..+. ..+..||.+|..++
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 34445567899999999732 222233333444444442 12456666777664
No 330
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=27.65 E-value=98 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=28.6
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCCHH--------------HHHH----HHHHHHHHHHCCcEEEEEeCCH
Q psy6322 6 RTSLAVALL--HNPDLLILDEPTVGLDPV--------------LSKS----IWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 6 rv~ia~al~--~~p~lllLDEPt~gLD~~--------------~~~~----i~~~l~~~~~~g~tvi~~sH~l 58 (128)
-+.+++.++ ..|+++++||-. |+-|. ..+. +.+++....+.+.+||++-...
T Consensus 1493 ~l~~~~~lvr~~~~~lVVIDsi~-al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~ 1564 (2050)
T 3cmu_A 1493 ALEICDALARSGAVDVIVVDSVA-ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 1564 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGG-GCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEE
T ss_pred HHHHHHHHHhcCCCCEEEEcChh-HhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 344455443 689999999953 33321 2222 3333333335577777775443
No 331
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=27.58 E-value=56 Score=23.55 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHH----CCcEEEEEeCCHH
Q psy6322 35 KSIWDRLVEMTE----NGKTVMITTHYIE 59 (128)
Q Consensus 35 ~~i~~~l~~~~~----~g~tvi~~sH~l~ 59 (128)
.++...+.++.+ .+.+|++|||-.-
T Consensus 168 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 196 (264)
T 3mbk_A 168 NRSFQVTKEIISECKSKGNNILIVAHASS 196 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEEEECTTH
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecHHH
Confidence 445566666542 4789999999754
No 332
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=27.48 E-value=63 Score=23.27 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHH----CCcEEEEEeCCHHHHHHHHh
Q psy6322 35 KSIWDRLVEMTE----NGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 35 ~~i~~~l~~~~~----~g~tvi~~sH~l~~~~~~~d 66 (128)
.++.+.+.++.+ .+.+|++|||-.- +..+..
T Consensus 167 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~-i~~l~~ 201 (263)
T 3c7t_A 167 KRGEVAMQAAVNDTEKDGGNVIFIGHAIT-LDQMVG 201 (263)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEEECHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCHHH-HHHHHH
Confidence 345566666542 4689999999753 444433
No 333
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.48 E-value=1.1e+02 Score=18.53 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=23.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEE-EEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTV-MITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tv-i~~sH~ 57 (128)
..|+++|+|--..+.|.. .+.+.+++... .+..| +++++.
T Consensus 54 ~~~dlvi~d~~~~~~~g~---~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGR---EVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCHH---HHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccHH---HHHHHHHcCcccccccEEEEecCC
Confidence 479999999888777642 33444444321 23344 444444
No 334
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=27.47 E-value=1.6e+02 Score=21.52 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCC--------CCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 16 NPDLLILDEPTVG--------LDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 16 ~p~lllLDEPt~g--------LD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
.-+++.+|-|=.+ -+.....++.+.+.++.++|.-+++|-++.
T Consensus 164 ~~~fvY~DPPY~~~~~~Y~~~f~~~d~~~L~~~l~~l~~~g~~~~lS~~d~ 214 (259)
T 1yf3_A 164 DGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLE 214 (259)
T ss_dssp TTEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTTTCEEEEEEESE
T ss_pred CCeEEEECCCCCCccchhccCCCHHHHHHHHHHHHHHhhCCCEEEEEeecC
Confidence 3468899998432 566778889999999877788899988865
No 335
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.28 E-value=80 Score=19.41 Aligned_cols=40 Identities=30% Similarity=0.325 Sum_probs=23.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe-CCH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITT-HYI 58 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s-H~l 58 (128)
..|+++|+|--..+.|.. .+.+.+++. .....||+.| ...
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~~-~~~~~ii~ls~~~~ 99 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKEQ-TKQPSVLILTTGRH 99 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTTS-SSCCEEEEEESCC-
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhh-CCCCCEEEEECCCC
Confidence 579999999888777642 233333331 2356666666 443
No 336
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=27.26 E-value=1.8e+02 Score=27.72 Aligned_cols=53 Identities=8% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHH--hcCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHH----HHCCcEEEEEeCCHH
Q psy6322 7 TSLAVAL--LHNPDLLILDEPTVGLDP-------------VLSKSIWDRLVEM----TENGKTVMITTHYIE 59 (128)
Q Consensus 7 v~ia~al--~~~p~lllLDEPt~gLD~-------------~~~~~i~~~l~~~----~~~g~tvi~~sH~l~ 59 (128)
+.+++.+ -.+|+++++|..++=... ...+.+.+.+.++ .+.+.+||+++|-..
T Consensus 450 l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~ 521 (1706)
T 3cmw_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred HHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 3444544 357999999998765431 1223355555555 345999999998543
No 337
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=27.26 E-value=1.1e+02 Score=21.73 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=34.9
Q ss_pred HHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-H--CCcEEEEEeCCHHH
Q psy6322 5 RRTSLAVAL---LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-E--NGKTVMITTHYIEE 60 (128)
Q Consensus 5 qrv~ia~al---~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~--~g~tvi~~sH~l~~ 60 (128)
.+-.+.+++ ..+|+++|+--+.+..... ...+.+.+.+.. . .+.++|+++|..+.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 334455555 3889988887776665543 344555566543 1 26899999997653
No 338
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=27.07 E-value=57 Score=23.38 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHH----HCCcEEEEEeCCHHHHHHHHh
Q psy6322 34 SKSIWDRLVEMT----ENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 34 ~~~i~~~l~~~~----~~g~tvi~~sH~l~~~~~~~d 66 (128)
..++...+.++. ..+.+|++|||-.- +..+..
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~-i~~ll~ 199 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGNS-LRALIK 199 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcHH-HHHHHH
Confidence 345666666653 36889999999643 444433
No 339
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=27.00 E-value=41 Score=25.95 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=25.7
Q ss_pred cCCCEEEEeCCCCCCCHHHH-------HHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLS-------KSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~-------~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
...|++++|-|..+.+.... ..+.....++.+.|..+++++..
T Consensus 278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 35799999999988764222 22223233333556677777654
No 340
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=26.90 E-value=77 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 34 SKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 34 ~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
...+.+.+.++.....++++++|++.
T Consensus 98 ~~~~l~~i~~~~~~~~~vllvGHnP~ 123 (186)
T 4hbz_A 98 VDEILAEVAAVPADASTVLVVGHAPT 123 (186)
T ss_dssp HHHHHHHHHTSCTTCSEEEEEECTTH
T ss_pred hHHHHHHHHhccCCCCeeeecccCCC
Confidence 34566667766556789999999974
No 341
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=26.84 E-value=73 Score=23.02 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHH----CCcEEEEEeCCHH
Q psy6322 35 KSIWDRLVEMTE----NGKTVMITTHYIE 59 (128)
Q Consensus 35 ~~i~~~l~~~~~----~g~tvi~~sH~l~ 59 (128)
.++.+.+.++.. .+.+|++|||-.-
T Consensus 177 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 205 (273)
T 3d4i_A 177 ERCAVSMGQIINTCPQDMGITLIVSHSSA 205 (273)
T ss_dssp HHHHHHHHHHHTTSTTCCSEEEEEECTTH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEechHH
Confidence 345566666542 4689999999854
No 342
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.54 E-value=1.1e+02 Score=19.15 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=17.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..|+++|+|--..+.|. ..+.+.+++.. .+..||++|..
T Consensus 49 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 87 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAEA---IDGLVRLKRFD-PSNAVALISGE 87 (154)
T ss_dssp CCCSEEEECC------C---HHHHHHHHHHC-TTSEEEEC---
T ss_pred CCCCEEEEeCCCCCCch---HHHHHHHHHhC-CCCeEEEEeCC
Confidence 56999999976655442 23333444432 34556555543
No 343
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=26.43 E-value=1.3e+02 Score=22.18 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 24 EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 24 EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
+|....|......+.+.+....+.|..||+.-|..
T Consensus 61 ~~~~~~~~~~l~~~~~~v~~~~~~gi~vild~h~~ 95 (305)
T 1h1n_A 61 SMTGSPDPNYLADLIATVNAITQKGAYAVVDPHNY 95 (305)
T ss_dssp STTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEecccc
Confidence 45567899888899999999888999999999964
No 344
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=26.37 E-value=1.1e+02 Score=18.34 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=14.7
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy6322 14 LHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~ 31 (128)
-..|+++++|-...+.|-
T Consensus 47 ~~~~dlvi~D~~l~~~~g 64 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDG 64 (128)
T ss_dssp TCCCCEEEEESCCSSSCH
T ss_pred hcCCCEEEEeCCCCCCCH
Confidence 357999999998887774
No 345
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=26.30 E-value=1.1e+02 Score=18.14 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=22.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++++|--..+.|.. .+.+.+++.. ....+|+.|.
T Consensus 42 ~~~~dlil~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 80 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDGL---SLIRRWRSND-VSLPILVLTA 80 (121)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHTT-CCSCEEEEES
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHhcC-CCCCEEEEec
Confidence 4579999999877777642 2333344322 2444554443
No 346
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=26.27 E-value=1.1e+02 Score=18.22 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
-..|+++|+|--..+.|.. .+.+.+++. ....+++.|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~ 82 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ--ANVALMFLTG 82 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCEEEEEES
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC--CCCcEEEEEC
Confidence 4579999999888777743 233344443 3455555544
No 347
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.19 E-value=1.2e+02 Score=18.73 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=24.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++|+|--..+.|-. .+.+.+++. .....||+.|..
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~l~~~l~~~-~~~~~ii~ls~~ 85 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSGE---DVLDWINQN-DIPTSVIIATAH 85 (137)
T ss_dssp HHCCSEEEECSBCSSSBHH---HHHHHHHHT-TCCCEEEEEESS
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHhc-CCCCCEEEEEec
Confidence 4589999999887777642 233344432 234556555543
No 348
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=26.08 E-value=99 Score=18.65 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.|+++|+|-...+.|. ..+.+.+++.. ....||++|...+
T Consensus 46 ~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 46 KQDIIILDLMMPDMDG---IEVIRHLAEHK-SPASLILISGYDS 85 (135)
T ss_dssp TTEEEEEECCTTTTHH---HHHHHHHHHTT-CCCEEEEEESSCH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhCC-CCCCEEEEEeccc
Confidence 4999999988776553 22333444322 3455666555544
No 349
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=25.53 E-value=1.5e+02 Score=23.22 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=31.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHh
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d 66 (128)
.+|++++|-|-.|++. +.+.+.++ .-..++++|.++....+-..
T Consensus 356 ~fD~Vv~dPPr~g~~~-----~~~~l~~~--~p~~ivyvsc~p~tlard~~ 399 (433)
T 1uwv_A 356 GFDKVLLDPARAGAAG-----VMQQIIKL--EPIRIVYVSCNPATLARDSE 399 (433)
T ss_dssp CCSEEEECCCTTCCHH-----HHHHHHHH--CCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEECCCCccHHH-----HHHHHHhc--CCCeEEEEECChHHHHhhHH
Confidence 5799999999999862 33334333 34678999999987665543
No 350
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=25.48 E-value=67 Score=25.36 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHH
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTV-GLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~ 61 (128)
+.+....+...+.+++++|+..... |+.+.. ..+.+.+ .+.++.++++.+..+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEECccch
Confidence 6777778888888999888876654 455543 3344433 34578888888877754
No 351
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=25.43 E-value=62 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH----HCCcEEEEEeCCHHHHHHHHh
Q psy6322 34 SKSIWDRLVEMT----ENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 34 ~~~i~~~l~~~~----~~g~tvi~~sH~l~~~~~~~d 66 (128)
..++...+.++. ..+.+|++|||-. .+..+..
T Consensus 182 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~-~i~~ll~ 217 (274)
T 4emb_A 182 VARVIPYWTDEIAKEVLEGKKVIVAAHGN-SLRALVK 217 (274)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeCHH-HHHHHHH
Confidence 345666666643 3688999999964 3444433
No 352
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=25.36 E-value=1.2e+02 Score=18.57 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
-..|+++|+|--..+.|.. .+.+.+++. .....||++|...+
T Consensus 53 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~~~~ 94 (143)
T 2qv0_A 53 HNKVDAIFLDINIPSLDGV---LLAQNISQF-AHKPFIVFITAWKE 94 (143)
T ss_dssp HCCCSEEEECSSCSSSCHH---HHHHHHTTS-TTCCEEEEEESCCT
T ss_pred hCCCCEEEEecCCCCCCHH---HHHHHHHcc-CCCceEEEEeCCHH
Confidence 3579999999877776632 233333332 12344555555433
No 353
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=25.35 E-value=2.4e+02 Score=21.91 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCCCCHH---HHHHHHHHHHHHHHC--CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEe
Q psy6322 16 NPDLLILDEPTVGLDPV---LSKSIWDRLVEMTEN--GKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLA 89 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~---~~~~i~~~l~~~~~~--g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~ 89 (128)
..++++.|.|. |.-.. ....++..+.+..+. |..+.++|.+.+....+. ..+++-..+.||.+-+
T Consensus 307 ~fD~Iv~NPPY-g~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~~~~g--------~~~~~~~~l~nG~l~~ 376 (393)
T 3k0b_A 307 EYGVVVANPPY-GERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYG--------KKATKKRKLYNGYLRT 376 (393)
T ss_dssp CSCEEEECCCC-CCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTTHHHHHT--------SCCSEEEEEC----CE
T ss_pred CCCEEEECCCC-ccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHhC--------CCcccceEEecCCEEE
Confidence 46899999997 33333 333455555554343 777777777777554433 2366777888888744
No 354
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=25.33 E-value=43 Score=23.71 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=27.2
Q ss_pred CCCEEEEeCCC-------CCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 16 NPDLLILDEPT-------VGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 16 ~p~lllLDEPt-------~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+..++++||-= .++. ...+...+...+..|..+|++|+..+.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e---~~rll~~l~~~r~~~~~iil~tq~~~~ 135 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSK---IPENVQWLNTHRHQGIDIFVLTQGPKL 135 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCC---CCHHHHGGGGTTTTTCEEEEEESCGGG
T ss_pred CceEEEEEChhhhccCccccch---hHHHHHHHHhcCcCCeEEEEECCCHHH
Confidence 48899999951 2221 123445555445668999999999643
No 355
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=25.02 E-value=68 Score=22.98 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=29.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
..+.+++++||-=.= + .+.+.+..+.+.|+.||++..+.+
T Consensus 89 ~~~~DvIlIDEaQFf--k----~~ve~~~~L~~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF--P----DIVEFCEAMANAGKTVIVAALDGT 128 (195)
T ss_dssp HHTCSEEEESSGGGC--T----THHHHHHHHHHTTCEEEEEEESBC
T ss_pred ccCCCEEEEEchhhh--H----HHHHHHHHHHHCCCeEEEEecccc
Confidence 567899999998332 1 155566777778999999999864
No 356
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=24.93 E-value=25 Score=24.66 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=32.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+-+++++||-=.-+|......+..++..+...-..++++.--...+..++..
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH
Confidence 45678999997543333333445555444433345777777767777777765
No 357
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.87 E-value=1.3e+02 Score=18.59 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=23.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH~ 57 (128)
-..|+++|+|-...+.|.. .+.+.+++. ...+..||+.|..
T Consensus 50 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 50 KTHPHLIITEANMPKISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHCCSEEEEESCCSSSCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 3579999999888777642 334444431 1124455555443
No 358
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.79 E-value=1.1e+02 Score=17.69 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~ 57 (128)
-..|+++++|-...+.+.. .+.+.+++... .+..+|+.|..
T Consensus 43 ~~~~dlii~d~~~~~~~~~---~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 43 LLQPIVILMAWPPPDQSCL---LLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHCCSEEEEECSTTCCTHH---HHHHHHHHTCCCSSCCCEEEESS
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHhccccCCCCEEEEeCC
Confidence 3579999999888776642 34444444321 34455555443
No 359
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=24.79 E-value=35 Score=26.15 Aligned_cols=39 Identities=13% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHH
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEAR 62 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~ 62 (128)
+|+++ |+|+++..+...+++.|.+.... +..+|.+.+..
T Consensus 252 ~~~vi----~iSA~~g~Gi~~L~~~I~~~~~~----~~~~~~~~~~R 290 (349)
T 2www_A 252 KPKVI----RISARSGEGISEMWDKMKDFQDL----MLASGELTAKR 290 (349)
T ss_dssp CCEEE----ECCTTTCTTHHHHHHHHHHHHHH----HHHHSHHHHHH
T ss_pred CceEE----EEecCCCCCHHHHHHHHHHHHHH----HhhCchHHHHH
Confidence 56666 49999999999999999987643 35678877653
No 360
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.76 E-value=1.3e+02 Score=18.80 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=25.2
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCH
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l 58 (128)
--..|+++|+|--..+.|.. .+.+.+++. .....||+.|-..
T Consensus 55 ~~~~~dlvi~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 55 ASREVDLVISAAHLPQMDGP---TLLARIHQQ-YPSTTRILLTGDP 96 (153)
T ss_dssp HHSCCSEEEEESCCSSSCHH---HHHHHHHHH-CTTSEEEEECCCC
T ss_pred HcCCCCEEEEeCCCCcCcHH---HHHHHHHhH-CCCCeEEEEECCC
Confidence 34679999999888877743 233344442 2345565555433
No 361
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.68 E-value=1.3e+02 Score=18.45 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=14.3
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy6322 15 HNPDLLILDEPTVGLDP 31 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~ 31 (128)
..|+++|+|--..+.|.
T Consensus 61 ~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCcEEEEECCCCCCCH
Confidence 57999999988877764
No 362
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=24.63 E-value=1.2e+02 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=33.2
Q ss_pred hcCCCEEEEeCCCC-------------CCC-H-----HHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 14 LHNPDLLILDEPTV-------------GLD-P-----VLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 14 ~~~p~lllLDEPt~-------------gLD-~-----~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+.+|+++++|-|.. ..+ . ..++.+.+.+.++.+.|..++++.-.++.
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~d 301 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGD 301 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCH
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccH
Confidence 57899999999942 222 1 12345667777777779999999877653
No 363
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=24.55 E-value=22 Score=25.15 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=33.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+-+++++||-=.-+|......+..++..+...-..++++.--...+.+++.+
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 224 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK 224 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHH
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHH
Confidence 34689999997533333334455555555543345677776666777777766
No 364
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=24.48 E-value=2.2e+02 Score=21.18 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHH
Q psy6322 5 RRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKL 68 (128)
Q Consensus 5 qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v 68 (128)
|+-++..++- . .+++.|++-+|=-......+...+. ..+..++++.+....+.++.+++
T Consensus 14 Q~~~i~~~~~-~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~ 72 (494)
T 1wp9_A 14 QEVIYAKCKE-T-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESF 72 (494)
T ss_dssp HHHHHHHGGG-S-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHhh-C-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHH
Confidence 5556655444 4 9999999988855555444444433 45667777778778888887764
No 365
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=24.47 E-value=96 Score=21.99 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----------HCCcEEEEEeCC
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMT----------ENGKTVMITTHY 57 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~----------~~g~tvi~~sH~ 57 (128)
++.+|++||.- .+.+..+..+.+.+.+-. ..+..+|++|+.
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 46899999964 567777788888777531 224567777775
No 366
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=24.31 E-value=69 Score=22.20 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHH----CCcEEEEEeCCHHHHHHHHh
Q psy6322 35 KSIWDRLVEMTE----NGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 35 ~~i~~~l~~~~~----~g~tvi~~sH~l~~~~~~~d 66 (128)
.++.+.+.++.. .+.+|++|||-.- +..+..
T Consensus 138 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~-i~~l~~ 172 (211)
T 1fzt_A 138 ERVLPYYKSTIVPHILKGEKVLIAAHGNS-LRALIM 172 (211)
T ss_dssp HHHHHHHHHHHTTHHHHTCCEEEESCHHH-HHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCeEEEEeChHH-HHHHHH
Confidence 456666766532 4789999999743 444433
No 367
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=24.29 E-value=2.2e+02 Score=27.14 Aligned_cols=70 Identities=6% Similarity=0.043 Sum_probs=40.8
Q ss_pred cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-HCCcEEEEEeCCHHHHHHHH--------hHHH
Q psy6322 15 HNPDLLILDEPTVGLD-P------------VLSKSIWDRLVEM---T-ENGKTVMITTHYIEEARLLC--------AKLY 69 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD-~------------~~~~~i~~~l~~~---~-~~g~tvi~~sH~l~~~~~~~--------d~v~ 69 (128)
.+|+++++|+...=.. . ...+.+.+.+.++ . +.|.+||+++|-...+.... ++++
T Consensus 809 ~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~L 888 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 888 (1706)
T ss_dssp TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHH
T ss_pred cCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchh
Confidence 6899999999876442 1 1233455555554 3 45999999999543322221 1211
Q ss_pred hhhhhhcceEEEeeCceE
Q psy6322 70 CEEARQAHIIGLMREGVL 87 (128)
Q Consensus 70 ~~~~~~~~~v~vl~~G~i 87 (128)
...||.++.++.+..
T Consensus 889 ---eq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 889 ---KFYASVRLDIRRIGA 903 (1706)
T ss_dssp ---HHHEEEEEEEEEEEE
T ss_pred ---hheeeEEEEEEeccc
Confidence 123667777865543
No 368
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=24.25 E-value=1.1e+02 Score=23.76 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=33.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
-+|+.|+....-|+..+..+.+++....+.|..|.++|.+-+.-+++
T Consensus 291 tLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL 337 (358)
T 3agj_B 291 TVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL 337 (358)
T ss_dssp EEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred EEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh
Confidence 46667776554477777767777776667789998888876665554
No 369
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=24.14 E-value=1.2e+02 Score=18.13 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=23.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~ 57 (128)
-..|+++++|--..+.|.. .+.+.+++.. .....+|+.|..
T Consensus 49 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGL---GLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp TSCCSEEEECSSSCSSCHH---HHHHHHTTCTTSTTCEEEECCSC
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHhcCccccCCCEEEEeCC
Confidence 4579999999888777743 2333333321 124556665543
No 370
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=24.11 E-value=1.7e+02 Score=22.28 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHhcCCCEEEEeCCCC-------CC---CHHHHHHHHHHHHHHHH---CCcEEEEEeCCHHH
Q psy6322 9 LAVALLHNPDLLILDEPTV-------GL---DPVLSKSIWDRLVEMTE---NGKTVMITTHYIEE 60 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~-------gL---D~~~~~~i~~~l~~~~~---~g~tvi~~sH~l~~ 60 (128)
+..+-..+|.+|++||--. +. .......+...+..... ....||.+|+..+.
T Consensus 200 ~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 3444556889999999721 11 12223334444444332 23456667877553
No 371
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=24.06 E-value=24 Score=25.49 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMT 45 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~ 45 (128)
-+|+|++=||..+|=|-.-...+.+.|..+.
T Consensus 70 ~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La 100 (187)
T 3k7i_B 70 YNPDIIFKDEENTGADRLMTQRCKDRLNSLA 100 (187)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHHHHHHHHH
T ss_pred CCCceEecCccCCCcchhhCHHHHHHHHHHH
Confidence 4799999999999988666666666666654
No 372
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=24.06 E-value=60 Score=23.97 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=10.4
Q ss_pred hcCCCEEEEeCC
Q psy6322 14 LHNPDLLILDEP 25 (128)
Q Consensus 14 ~~~p~lllLDEP 25 (128)
...|.+|++||-
T Consensus 97 ~~~~~vl~iDEi 108 (293)
T 3t15_A 97 KGNMCCLFINDL 108 (293)
T ss_dssp TSSCCCEEEECC
T ss_pred cCCCeEEEEech
Confidence 457999999997
No 373
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=24.01 E-value=1.3e+02 Score=18.44 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~ 57 (128)
-..|+++|+|--..+.|-. .+.+.+++.. .....||+.|..
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 45 ATPPDLVLLDIMMEPMDGW---ETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEESS
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHcCcccCCCCEEEEECC
Confidence 3579999999888777743 2333444321 124456555543
No 374
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=23.97 E-value=81 Score=22.25 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHH-HH---HCCcEEEEEeCCHHHHHHHHh
Q psy6322 33 LSKSIWDRLVE-MT---ENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 33 ~~~~i~~~l~~-~~---~~g~tvi~~sH~l~~~~~~~d 66 (128)
...++...+.+ +. ..+.+|++|||-.- +..+..
T Consensus 154 ~~~R~~~~l~~~i~~~~~~~~~vlvVsHg~~-i~~l~~ 190 (240)
T 1qhf_A 154 VIDRLLPYWQDVIAKDLLSGKTVMIAAHGNS-LRGLVK 190 (240)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEeCHHH-HHHHHH
Confidence 34556666666 43 25789999999753 334433
No 375
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=23.91 E-value=2.3e+02 Score=21.17 Aligned_cols=52 Identities=15% Similarity=0.031 Sum_probs=37.3
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHH
Q psy6322 9 LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~ 65 (128)
+..|.....+.++|+=. .|++.. +.+++....+-|..+++-.|+.+++.+..
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~---l~~l~~~a~~lGl~~lvevh~~eEl~~A~ 186 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDL---AKELEDTAFALGMDALIEVHDEAEMERAL 186 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHH---HHHHHHHHHHTTCEEEEEECSHHHHHHHT
T ss_pred HHHHHHcCCCEEEEccc--ccCHHH---HHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 56677889999999754 577644 44444444455999999999999986543
No 376
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=23.74 E-value=71 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHH----HCCcEEEEEeCCHHHHHHHHh
Q psy6322 33 LSKSIWDRLVEMT----ENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 33 ~~~~i~~~l~~~~----~~g~tvi~~sH~l~~~~~~~d 66 (128)
...++...+.++. ..+.+|++|||-.- +..+..
T Consensus 165 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~-i~~l~~ 201 (258)
T 3kkk_A 165 TVERVLPFWFDHIAPDILANKKVMVAAHGNS-LRGLVK 201 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCEEEEEcCHHH-HHHHHH
Confidence 3455666666642 36889999999643 444433
No 377
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=23.73 E-value=82 Score=22.37 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=18.0
Q ss_pred HHHHHHHHHHH-HH---HCCcEEEEEeCCH
Q psy6322 33 LSKSIWDRLVE-MT---ENGKTVMITTHYI 58 (128)
Q Consensus 33 ~~~~i~~~l~~-~~---~~g~tvi~~sH~l 58 (128)
...++...+.+ +. ..+.+|++|||-.
T Consensus 156 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 185 (249)
T 1e58_A 156 TIDRVIPYWNETILPRMKSGERVIIAAHGN 185 (249)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcChH
Confidence 34556666666 43 3578999999974
No 378
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=23.62 E-value=36 Score=26.74 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCCCCHH--------------------HHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 16 NPDLLILDEPTVGLDPV--------------------LSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~--------------------~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
..|++++|=|++|.... .+..+.+...++.+.|..++++|.
T Consensus 315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 35899999999986421 112333333334456788888773
No 379
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=23.61 E-value=1.4e+02 Score=18.44 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=14.3
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy6322 14 LHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~ 31 (128)
-..|+++|+|--..+.|-
T Consensus 46 ~~~~dlvllD~~l~~~~g 63 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDG 63 (136)
T ss_dssp HCCCSEEEEESEETTEEH
T ss_pred hcCCCEEEEeCCCCCCCH
Confidence 457999999987777664
No 380
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=23.60 E-value=91 Score=21.37 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHH-------CCcEEEEEeCCH
Q psy6322 33 LSKSIWDRLVEMTE-------NGKTVMITTHYI 58 (128)
Q Consensus 33 ~~~~i~~~l~~~~~-------~g~tvi~~sH~l 58 (128)
...++.+.+.++.+ .+.+|++|||--
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsHg~ 145 (202)
T 3mxo_A 113 DGARIEAAFRNYIHRADARQEEDSYEIFICHAN 145 (202)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhhccCCCceEEEEeCHH
Confidence 34556667777653 267899999964
No 381
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=23.45 E-value=1.4e+02 Score=20.56 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=22.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..+++|= |.+......+.+.+++........|++||.
T Consensus 51 ~~iliD~---G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 87 (227)
T 1mqo_A 51 GLVLVDS---SWDDKLTKELIEMVEKKFQKRVTDVIITHA 87 (227)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHHTSCEEEEECCCC
T ss_pred eEEEEEC---CCChHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 4566773 445544556666676653346777888993
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=23.41 E-value=0.92 Score=33.60 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=17.2
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCC
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEP 25 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEP 25 (128)
||++|++.+++|+.++|++ +|++
T Consensus 172 gg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp TCCTTCCEEEEEEESCTTS--SCHH
T ss_pred CCCCCCCEEEEEecCCchh--CCHh
Confidence 5677888888888888876 4554
No 383
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=23.36 E-value=34 Score=24.35 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHH-C-CcEEEEEe
Q psy6322 16 NPDLLILDEPTVGL----DPVLSKSIWDRLVEMTE-N-GKTVMITT 55 (128)
Q Consensus 16 ~p~lllLDEPt~gL----D~~~~~~i~~~l~~~~~-~-g~tvi~~s 55 (128)
+|++++-||-.+|- |+.-...+..+-..+.. . |..+.++|
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~S 108 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTE 108 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 89999999995554 45554444443333322 2 55676665
No 384
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=23.34 E-value=75 Score=23.00 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=12.4
Q ss_pred CcEEEEEeCCHHHHHHHHhH
Q psy6322 48 GKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 48 g~tvi~~sH~l~~~~~~~d~ 67 (128)
+.+|+++||-- .+..+..+
T Consensus 175 ~~~vlvVsHg~-~i~~ll~~ 193 (265)
T 3e9c_A 175 PVHALMVSHGA-FIRISVRH 193 (265)
T ss_dssp CCEEEEEECHH-HHHHHHHH
T ss_pred CCeEEEEeCHH-HHHHHHHH
Confidence 67999999964 34344333
No 385
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.31 E-value=0.84 Score=33.15 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.9
Q ss_pred ChHhHHHHHHHHHhcCCCEEEEeCCC
Q psy6322 1 GGQQRRTSLAVALLHNPDLLILDEPT 26 (128)
Q Consensus 1 gG~~qrv~ia~al~~~p~lllLDEPt 26 (128)
||++|++.+++|+.++|++ +|++.
T Consensus 148 g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 148 GFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp TCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred CCCCCCCEEEEEccCCchh--CCHHH
Confidence 5778888888888888886 57664
No 386
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.14 E-value=1.4e+02 Score=18.29 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeCCH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYI 58 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH~l 58 (128)
..|+++|+|--..+.|.. .+.+.+++.. .....+|+.|...
T Consensus 58 ~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNGI---EFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp CCCSEEEEETTCTTSCHH---HHHHHHTTSGGGTTCEEEEEESCC
T ss_pred CCCCEEEEecCCCCCCHH---HHHHHHHcCccccCCcEEEEeCCC
Confidence 579999999887777642 3333333322 1345565555443
No 387
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=23.14 E-value=1.9e+02 Score=20.09 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHCCcEEEEEeCCH--------HHHHHHHh---HHHhhhhhhcceEEEeeCceE
Q psy6322 34 SKSIWDRLVEMTENGKTVMITTHYI--------EEARLLCA---KLYCEEARQAHIIGLMREGVL 87 (128)
Q Consensus 34 ~~~i~~~l~~~~~~g~tvi~~sH~l--------~~~~~~~d---~v~~~~~~~~~~v~vl~~G~i 87 (128)
...+.+++..+.+...++|+||.++ .....+.| ++-.-.+..||+|+.+--|.-
T Consensus 112 ~~~~~~ll~~l~~~~~~~vlVsNEVG~GiVP~~~~~R~frD~~G~lnq~lA~~ad~V~lvvaGip 176 (180)
T 1c9k_A 112 DDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADEVWLVVSGIG 176 (180)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCCSSCCCSSHHHHHHHHHHHHHHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHccCCCEEEEEccccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCc
Confidence 3456667777777788999999887 11122211 222224566788888887754
No 388
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=23.14 E-value=1.5e+02 Score=18.94 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.1
Q ss_pred HhcCCCEEEEeCCCCCCCH
Q psy6322 13 LLHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~ 31 (128)
--..|+++|+|--..+.|.
T Consensus 68 ~~~~~dlvilD~~l~~~~g 86 (164)
T 3t8y_A 68 IELKPDVITMDIEMPNLNG 86 (164)
T ss_dssp HHHCCSEEEECSSCSSSCH
T ss_pred ccCCCCEEEEeCCCCCCCH
Confidence 3457999999988777764
No 389
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.09 E-value=1.4e+02 Score=18.26 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=24.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEM---TENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~---~~~g~tvi~~sH~ 57 (128)
..|+++|+|--..+.|.. .+.+.+++. ......+|++|..
T Consensus 59 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGW---ELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp CCCSEEEEESSCSSSCHH---HHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred CCCCEEEEcCCCCCCCHH---HHHHHHHHhhhhccCCCeEEEEeCC
Confidence 679999999888887753 344445542 1234555555543
No 390
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.04 E-value=1.8e+02 Score=22.70 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEE
Q psy6322 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMIT 54 (128)
Q Consensus 3 ~~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~ 54 (128)
+.+++.-|...+.+.++.+.|+|.. ++ ..+...++++. +.|..+|++
T Consensus 269 ~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 269 DFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcCCCEEEE
Confidence 3455665655666788888887643 33 33445555554 346666666
No 391
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=22.89 E-value=1.1e+02 Score=23.96 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 25 PTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 25 Pt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
|..++|+.....+.+.+..+.+.|.-++++++
T Consensus 19 ~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~g 50 (367)
T 2j5v_A 19 GSRRLNRAHIVELVRQCAQLHAAGHRIVIVTS 50 (367)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 44689999999999999999888888877765
No 392
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=22.82 E-value=1.6e+02 Score=18.84 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=38.9
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHH
Q psy6322 15 HNPDLLILD-EPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEAR 62 (128)
Q Consensus 15 ~~p~lllLD-EPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~ 62 (128)
.+++.+++| .-..-+|......+.+..+.....|..++++.=.++.+.
T Consensus 41 ~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p~va~ 89 (123)
T 3zxn_A 41 VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAI 89 (123)
T ss_dssp SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 478999999 677788899999999999988777888888877666443
No 393
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=22.75 E-value=23 Score=25.51 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=31.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+-+++++||-=.-+|......+..++..+.....+++++.--...+.+++.+
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHH
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHH
Confidence 44678999997433332233344444444333356777777777778777766
No 394
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=22.69 E-value=1.2e+02 Score=17.69 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEE-EEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVM-ITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi-~~sH~ 57 (128)
-..|+++++|-...+.|.. .+.+.+++. ....+| ++++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~~~ 82 (120)
T 2a9o_A 43 AEQPDIIILDLMLPEIDGL---EVAKTIRKT--SSVPILMLSAKD 82 (120)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCCEEEEESCC
T ss_pred hCCCCEEEEeccCCCCCHH---HHHHHHHhC--CCCCEEEEecCC
Confidence 4579999999887777643 233444442 344454 44443
No 395
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=22.58 E-value=2e+02 Score=21.14 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH-HC-CcEEEEEeCCHHH
Q psy6322 9 LAVALLHNPDLLILDEPTV----------GLDPVLSKSIWDRLVEMT-EN-GKTVMITTHYIEE 60 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~----------gLD~~~~~~i~~~l~~~~-~~-g~tvi~~sH~l~~ 60 (128)
+..+-..+|.+|++||--+ .........+...+..+. .. +..||.+|+.++.
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 4455567899999999632 111223344444444443 22 4556667776654
No 396
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=22.43 E-value=84 Score=19.56 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=12.4
Q ss_pred CCCEEEEeCCCCCCC
Q psy6322 16 NPDLLILDEPTVGLD 30 (128)
Q Consensus 16 ~p~lllLDEPt~gLD 30 (128)
.|+++|+|--..+.|
T Consensus 60 ~~dlvilD~~l~~~~ 74 (145)
T 3kyj_B 60 NVDLILLDIEMPVMD 74 (145)
T ss_dssp TCCEEEECTTSCCCT
T ss_pred CCCEEEEeCCCCCCC
Confidence 799999998776655
No 397
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.42 E-value=1.4e+02 Score=18.23 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=21.6
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHH-HHCCcEEEEEeC
Q psy6322 15 HNPDLLILDEPTV-GLDPVLSKSIWDRLVEM-TENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLDEPt~-gLD~~~~~~i~~~l~~~-~~~g~tvi~~sH 56 (128)
..|+++|+|--.. +.| -..+.+.+++. ......||+.|.
T Consensus 49 ~~~dlvi~D~~l~~~~~---g~~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 49 DSITLIIMDIAFPVEKE---GLEVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp CCCSEEEECSCSSSHHH---HHHHHHHHHHSGGGTTCCEEEEES
T ss_pred CCCcEEEEeCCCCCCCc---HHHHHHHHHhCcccCCCCEEEEeC
Confidence 5799999997665 433 33444555551 123444544443
No 398
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=22.35 E-value=2e+02 Score=19.93 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.2
Q ss_pred HhcCCCEEEEeCCCCCCCH
Q psy6322 13 LLHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~ 31 (128)
--..|+++|+|=-..+.|-
T Consensus 64 ~~~~~dlvllD~~lp~~~g 82 (250)
T 3r0j_A 64 RETRPDAVILDVXMPGMDG 82 (250)
T ss_dssp HHHCCSEEEEESCCSSSCH
T ss_pred HhCCCCEEEEeCCCCCCCH
Confidence 3468999999988877774
No 399
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.26 E-value=1.4e+02 Score=18.21 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=21.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..|+++|+|- ..+.+ ...+.+.+++.. .+..||+.|..
T Consensus 46 ~~~~dlvi~d~-~~~~~---g~~~~~~l~~~~-~~~pii~ls~~ 84 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGEE---SLNLIRRIREEF-PDTKVAVLSAY 84 (142)
T ss_dssp TSCCSEEEEEC-TTTHH---HHHHHHHHHHHC-TTCEEEEEESC
T ss_pred ccCCCEEEEeC-CCCCc---HHHHHHHHHHHC-CCCCEEEEECC
Confidence 45799999998 55432 233444444432 24555555443
No 400
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=22.10 E-value=1.5e+02 Score=21.41 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEE
Q psy6322 27 VGLDPVLSKSIWDRLVEMTENGKTVMIT 54 (128)
Q Consensus 27 ~gLD~~~~~~i~~~l~~~~~~g~tvi~~ 54 (128)
.++|+.....+.+.+.++.+.|.-++++
T Consensus 25 ~~~~~~~i~~~a~~I~~l~~~G~~vvlV 52 (240)
T 4a7w_A 25 FGIDIHVLDHIAKEIKSLVENDIEVGIV 52 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 4799999999999999988777655444
No 401
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=22.07 E-value=1.4e+02 Score=23.71 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcE--EEEE
Q psy6322 4 QRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKT--VMIT 54 (128)
Q Consensus 4 ~qrv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~t--vi~~ 54 (128)
.+++.-|...+.+.+++|.|+|. +++. .+...++++. +.|.. +|++
T Consensus 268 ~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVI 316 (444)
T 3bgw_A 268 WGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMI 316 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEE
Confidence 45666666666788899999874 5443 3444555554 33666 7666
No 402
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=22.03 E-value=1.3e+02 Score=19.73 Aligned_cols=41 Identities=7% Similarity=0.049 Sum_probs=22.6
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE-EeCC
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI-TTHY 57 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~-~sH~ 57 (128)
--..|+++|+|=-..+.|-. .+.+.+++.. .+..||+ ++|.
T Consensus 48 ~~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~-~~~~ii~lt~~~ 89 (184)
T 3rqi_A 48 GAEKFEFITVXLHLGNDSGL---SLIAPLCDLQ-PDARILVLTGYA 89 (184)
T ss_dssp TTSCCSEEEECSEETTEESH---HHHHHHHHHC-TTCEEEEEESSC
T ss_pred hhCCCCEEEEeccCCCccHH---HHHHHHHhcC-CCCCEEEEeCCC
Confidence 34679999999776665532 2333344332 2445544 4454
No 403
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=22.00 E-value=2.4e+02 Score=20.76 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHH
Q psy6322 9 LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLC 65 (128)
Q Consensus 9 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~ 65 (128)
+..+-...++.++|+=. -|+. ..+.+++...++.|..+++=.|+.+++.+..
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~---~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~ 167 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTA---EQIKEIYEAAEELGMDSLVEVHSREDLEKVF 167 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCH---HHHHHHHHHHHTTTCEEEEEECSHHHHHHHH
T ss_pred HHHHHHcCCCEEEEecc--cCCH---HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 44577788999999865 4666 4566666555556999999999999976543
No 404
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.98 E-value=99 Score=19.01 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=20.8
Q ss_pred cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 15 HNPDLLILDEPTVG--LDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLDEPt~g--LD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
..|+++|+|--..+ .|. ..+.+.+++.. ....||++|.
T Consensus 49 ~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 88 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSG---IELLETLVKRG-FHLPTIVMAS 88 (136)
T ss_dssp TTEEEEEEETTGGGBTTHH---HHHHHHHHHTT-CCCCEEEEES
T ss_pred cCCCEEEEeCcCCCCCccH---HHHHHHHHhCC-CCCCEEEEEc
Confidence 45899999987665 543 22333344332 2444554444
No 405
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=21.97 E-value=1.2e+02 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCCEEEEeCCC--------------CCCCH-----HHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 16 NPDLLILDEPT--------------VGLDP-----VLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 16 ~p~lllLDEPt--------------~gLD~-----~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
+|+++++|-|. +.-|. ..++.+...+.++.+.|..++++.-+++
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~ 303 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGID 303 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCC
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 89999999885 23342 2234477888888777999999987664
No 406
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=21.88 E-value=1.6e+02 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCcEEEEEeCCHH
Q psy6322 9 LAVALLHN-PDLLILDEPTVGLDPVLSKSIWDRLVEMTE--NGKTVMITTHYIE 59 (128)
Q Consensus 9 ia~al~~~-p~lllLDEPt~gLD~~~~~~i~~~l~~~~~--~g~tvi~~sH~l~ 59 (128)
++..|..+ -+++.+|-|..|-.......+.+.+.++.+ ....++++.|.+.
T Consensus 31 ~~~~L~~~G~~v~~~d~~g~g~s~~~~~~~~~~i~~~~~~~~~~~v~lvGhS~G 84 (285)
T 1ex9_A 31 IPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHG 84 (285)
T ss_dssp HHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHHHHHHHCCSCEEEEEETTH
T ss_pred HHHHHHhCCCEEEEEeCCCCCCchhhHHHHHHHHHHHHHHhCCCCEEEEEECHh
Confidence 55566655 899999999999887777777777776543 2467899999985
No 407
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=21.78 E-value=1.1e+02 Score=23.52 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEeCCHHHHHHHHhH
Q psy6322 6 RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN--GKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 6 rv~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~--g~tvi~~sH~l~~~~~~~d~ 67 (128)
.++++.+|+..|+++++=|--. | ...+.+.+++..++ +..+|+++--......++++
T Consensus 175 ~lA~~a~la~ga~~iliPE~~~--~---~~~~~~~i~~~~~~g~~~~iivvaEG~~~~~~~~~~ 233 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPEADY--D---MHEIIARLKRGHERGKKHSIIIVAEGVGSGVEFGKR 233 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTTBCC--C---HHHHHHHHHHHHTTTCCCEEEEEETTTCCHHHHHHH
T ss_pred HHHHHHHhccCCCEEEecCCCC--C---HHHHHHHHHHHHHcCCCceEEEEECCCCcchHHHHH
Confidence 6788999999999999966422 3 34556666665433 56788887655333333333
No 408
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.66 E-value=1.5e+02 Score=18.16 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=22.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH 56 (128)
..|+++|+|-...+.|.. .+.+.+++.. ....||+.|-
T Consensus 48 ~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~ 85 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGM---DILREIKKIT-PHMAVIILTG 85 (143)
T ss_dssp TTCCEEEEESCCSSSCHH---HHHHHHHHHC-TTCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCeEEEEEC
Confidence 589999999888777643 2333344432 2445544443
No 409
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=21.59 E-value=1.5e+02 Score=21.34 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=24.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 23 DEPTVGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 23 DEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
|+...++|+.....+.+.|.++.+.|.-+++++
T Consensus 21 ~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVh 53 (252)
T 1z9d_A 21 GEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVI 53 (252)
T ss_dssp CSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 334567899999999999999887776665554
No 410
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=21.56 E-value=1.5e+02 Score=21.40 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 26 TVGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 26 t~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
..++|+.....+.+.+.++.+.|.-+++++
T Consensus 26 ~~~~~~~~i~~la~~i~~l~~~G~~vviV~ 55 (243)
T 3ek6_A 26 DYGIDPKVINRLAHEVIEAQQAGAQVALVI 55 (243)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457999999999999999988776655543
No 411
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=21.54 E-value=83 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=18.4
Q ss_pred HHHHHHHHHHH-HH---HCCcEEEEEeCCHH
Q psy6322 33 LSKSIWDRLVE-MT---ENGKTVMITTHYIE 59 (128)
Q Consensus 33 ~~~~i~~~l~~-~~---~~g~tvi~~sH~l~ 59 (128)
...++...+.+ +. ..+.+|++|||-.-
T Consensus 161 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 191 (267)
T 2hhj_A 161 VLERLLPYWNERIAPEVLRGKTILISAHGNS 191 (267)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcCcHH
Confidence 34556666666 43 25789999999743
No 412
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=21.49 E-value=33 Score=23.64 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=32.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
.+-+++++||-=.-++......+..++..+......++++.--...+.+++.+
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHH
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHH
Confidence 44689999997432232233445555554433345677777766778777776
No 413
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=21.34 E-value=73 Score=21.98 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=30.7
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHH-CCcEEEEEeCCH
Q psy6322 14 LHNPDLLILDEPTV----GLDPVLSKSIWDRLVEMTE-NGKTVMITTHYI 58 (128)
Q Consensus 14 ~~~p~lllLDEPt~----gLD~~~~~~i~~~l~~~~~-~g~tvi~~sH~l 58 (128)
..+|+++++|--+. .-+......+...+..+.+ .+.++++++|-.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 45799999996421 1244555666666777654 499999999864
No 414
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=21.16 E-value=1.1e+02 Score=23.94 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=31.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHH
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLL 64 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~ 64 (128)
.+|+.|+-...-|+ .+..+.+++....+.|..|.++|.+-+.-+++
T Consensus 304 tLLV~d~l~r~~d~-~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL 349 (364)
T 3obw_A 304 TVLVIEDLLSSDEQ-ERLTIERMLEDIENKRGEVILVPKESPIYFEL 349 (364)
T ss_dssp EEEEEGGGGSSCHH-HHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH
T ss_pred EEEEeccCcccccc-hHHHHHHHHHHHHhcCCEEEEECCCCCCchhh
Confidence 47888887777777 55555555555556688888888776655544
No 415
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.14 E-value=28 Score=26.25 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6322 8 SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM 44 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~ 44 (128)
++|.|-+. -.+.| |||-|+|..+-..|.+...+.
T Consensus 178 avAka~a~-~g~~l--EPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 178 AVAKACAA-HDFWL--EPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp HHHHHHHH-TTCEE--EEBSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHH-cCceE--CCCCCccHhhHHHHHHHHHHc
Confidence 45555544 34433 999999999999888877664
No 416
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=20.87 E-value=1.1e+02 Score=20.90 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 17 PDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 17 p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
-..+|+|=. ..+.....+.+.+.+........|++||.
T Consensus 40 ~~~iLiD~G---~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 77 (219)
T 3l6n_A 40 KGVVLFDVP---WEKVQYQSLMDTIKKRHNLPVVAVFATHS 77 (219)
T ss_dssp TEEEEESCC---SSGGGHHHHHHHHHHHHSCCEEEEECSSS
T ss_pred CEEEEEeCC---CChHHHHHHHHHHHHhcCCceeEEEecCC
Confidence 346677743 34444555666666543346778888984
No 417
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=20.85 E-value=39 Score=23.25 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=30.8
Q ss_pred hcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhH
Q psy6322 14 LHNPDLLILDEPTVGLD-PVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAK 67 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD-~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~ 67 (128)
..+.+++++||-=.-++ ......+..++.........++++.--...+.+++.+
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 34568999999855444 3444445554443323345666665555556666654
No 418
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.83 E-value=1.6e+02 Score=18.12 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=24.1
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEeC
Q psy6322 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56 (128)
Q Consensus 13 l~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~-~~g~tvi~~sH 56 (128)
--..|+++|+|--..+.|-. .+.+.+++.. .....||+.|-
T Consensus 45 ~~~~~dlvl~D~~lp~~~g~---~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 45 YKNLPDALICDVLLPGIDGY---TLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HHSCCSEEEEESCCSSSCHH---HHHHHHHHSGGGTTCCEEEEEC
T ss_pred HhCCCCEEEEeCCCCCCCHH---HHHHHHHcCCCcCCccEEEEec
Confidence 34689999999988887742 2333444421 22444554443
No 419
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.78 E-value=1.6e+02 Score=18.28 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=25.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---Cc-EEEEEeCCHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN---GK-TVMITTHYIE 59 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~---g~-tvi~~sH~l~ 59 (128)
-..|+++|+|=-..+.|-. .+.+.+++.... .. .|+++++.-.
T Consensus 56 ~~~~dlvl~D~~mp~~~g~---~~~~~lr~~~~~~~~~~pii~~s~~~~~ 102 (143)
T 3m6m_D 56 EEDYDAVIVDLHMPGMNGL---DMLKQLRVMQASGMRYTPVVVLSADVTP 102 (143)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHHHHTTCCCCCEEEEESCCCH
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhchhccCCCCeEEEEeCCCCH
Confidence 4689999999888787743 334444443222 23 4455555433
No 420
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=20.70 E-value=2.3e+02 Score=21.92 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCCCCHH---HHHHHHHHHHHHHHC--CcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEe
Q psy6322 16 NPDLLILDEPTVGLDPV---LSKSIWDRLVEMTEN--GKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLA 89 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~---~~~~i~~~l~~~~~~--g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~ 89 (128)
.+++++.|-|.. .... ....++..+.+..+. |..+.++|-+.+....+. ..+++-..+.||.+-+
T Consensus 301 ~~D~Iv~NPPyg-~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~~~~g--------~~~~~~~~l~nG~l~~ 370 (385)
T 3ldu_A 301 EFGFIITNPPYG-ERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEYEFG--------QKADKKRKLYNGMLKT 370 (385)
T ss_dssp BSCEEEECCCCC-CSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTTHHHHHT--------SCCSEEEEEEETTEEE
T ss_pred CCcEEEECCCCc-CccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHHHHHhhC--------CCcccceEEecCCEEE
Confidence 478999999964 3333 333455555444444 677766666666554433 2356677888887754
No 421
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.69 E-value=23 Score=25.70 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=26.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
.+++++++||. ..++......+.+.+.+. ..+..+|+++....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETG-GGSCHHHHHTTGGGTSSS-SSSEEEEEEESCGG
T ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 46899999995 345665555555544432 23456777777654
No 422
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=20.64 E-value=29 Score=26.49 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6322 8 SLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM 44 (128)
Q Consensus 8 ~ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~ 44 (128)
++|.|-+. -.+.| |||-|+|..+-..|.+...+.
T Consensus 201 avAkAca~-~g~~l--EPTGGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 201 AVAKACAE-EGFAL--EPTGGIDKENFETIVRIALEA 234 (275)
T ss_dssp HHHHHHHH-HTCEE--EEBSSCCTTTHHHHHHHHHHT
T ss_pred HHHHHHHH-cCceE--CCCCCccHhHHHHHHHHHHHc
Confidence 44444444 33433 999999999988888776653
No 423
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.58 E-value=1.6e+02 Score=18.09 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=14.1
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy6322 14 LHNPDLLILDEPTVGLDP 31 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~ 31 (128)
-..|+++|+|--..+.|.
T Consensus 49 ~~~~dlii~D~~l~~~~g 66 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANG 66 (144)
T ss_dssp TCCCSEEEECTTCGGGCH
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 467999999987776653
No 424
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=20.55 E-value=1.1e+02 Score=22.25 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.2
Q ss_pred cCCCEEEEeCCC
Q psy6322 15 HNPDLLILDEPT 26 (128)
Q Consensus 15 ~~p~lllLDEPt 26 (128)
.+.++++|||..
T Consensus 102 ~~~kIiiLDEad 113 (212)
T 1tue_A 102 TDTKVAMLDDAT 113 (212)
T ss_dssp TTCSSEEEEEEC
T ss_pred CCCCEEEEECCC
Confidence 367899999987
No 425
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.52 E-value=1.3e+02 Score=17.90 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=13.1
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy6322 15 HNPDLLILDEPTVGLDP 31 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~ 31 (128)
..|+++|+|--..+.|.
T Consensus 45 ~~~dlvi~D~~l~~~~g 61 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSG 61 (127)
T ss_dssp SCCSEEEEESEETTEEH
T ss_pred cCCCEEEEecCCCCCCH
Confidence 36999999987766653
No 426
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=20.50 E-value=51 Score=23.85 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhHHHhhhhhhcceEEEeeCceEEe
Q psy6322 16 NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLA 89 (128)
Q Consensus 16 ~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~~~~~~d~v~~~~~~~~~~v~vl~~G~i~~ 89 (128)
.-++.++++|..| .+.+.++++++|++-....+.+- +.......+++.-.+=|++
T Consensus 55 SGRIsv~~~~~~~----------------~K~~g~wl~~sH~~~~~~e~~~~---l~~~~~~~l~~kfep~IlH 109 (200)
T 2it2_A 55 SGRISVMEMPHFG----------------DKVNAKWLGKWHREVSLYEVLEA---IKKHRSGQLWFLVRSPILH 109 (200)
T ss_dssp CCEEEEEEEC-----------------------CEEEEEESSCCCHHHHHHH---HTTCCSSEEEEEEECCEEE
T ss_pred CccEEEEecCCcC----------------CCCCCEEEEEECCCCCHHHHHHH---hhccCCceEEEEecCCEEE
Confidence 3467888998522 23466999999998554443321 1111224555555555554
No 427
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.45 E-value=1.6e+02 Score=18.11 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=22.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..|+++|+|--..+.|. ..+.+.+++.. ....||+.|-.
T Consensus 66 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~lt~~ 104 (146)
T 4dad_A 66 DAFDILMIDGAALDTAE---LAAIEKLSRLH-PGLTCLLVTTD 104 (146)
T ss_dssp TTCSEEEEECTTCCHHH---HHHHHHHHHHC-TTCEEEEEESC
T ss_pred CCCCEEEEeCCCCCccH---HHHHHHHHHhC-CCCcEEEEeCC
Confidence 68999999987766442 23334444432 34555555543
No 428
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=20.39 E-value=42 Score=21.76 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHC-CcEEEEEeCCHH
Q psy6322 15 HNPDLLILDEPTVGLD---PVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD---~~~~~~i~~~l~~~~~~-g~tvi~~sH~l~ 59 (128)
.+|.++++||--.-.. ......+.+.+..+... +..+|.+|....
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 4567999999633211 11112234445554444 566777777654
No 429
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=20.39 E-value=57 Score=25.15 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=25.6
Q ss_pred cCCCEEEEeCCCCCCCHHHH----HHHHHHHHH---HHHCCcEEEEEeCC
Q psy6322 15 HNPDLLILDEPTVGLDPVLS----KSIWDRLVE---MTENGKTVMITTHY 57 (128)
Q Consensus 15 ~~p~lllLDEPt~gLD~~~~----~~i~~~l~~---~~~~g~tvi~~sH~ 57 (128)
...|++++|-|..+...... ....+++.+ +.+.|..++++|..
T Consensus 288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 36799999999987654222 222233333 23456677777654
No 430
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=20.38 E-value=31 Score=28.65 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=32.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+.+|+++++|-+.+..+ .+...+.+..+.|..++++.-+++.
T Consensus 214 lenp~Ill~d~~Is~~~-----~l~~~le~i~~~g~~lvIi~~~I~~ 255 (547)
T 1kp8_A 214 LESPFILLADKKISNIR-----EMLPVLEAVAKAGKPLLIIAEDVEG 255 (547)
T ss_dssp EESCEEECEESEECCGG-----GTHHHHHHHHGGGCCEEEEESEECH
T ss_pred ecCceEEEEcCcCCCHH-----HHHHHHHHHHhcCCCEEEECCCcCH
Confidence 46899999999877543 3667777777778999998877643
No 431
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=20.31 E-value=1.8e+02 Score=20.18 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=23.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 18 DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 18 ~lllLDEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
..+|+|= |..+.....+.+.+.+........|++||.
T Consensus 58 ~~iLID~---G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~ 94 (243)
T 4hl2_A 58 RVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHA 94 (243)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSS
T ss_pred cEEEEEC---CCCCccHHHHHHHHHHhhCCCeeEEEECCC
Confidence 3666673 455566667777777652224666888885
No 432
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=20.28 E-value=1.6e+02 Score=23.99 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=30.4
Q ss_pred hcCCCEEEEeCCCCCCC------------HHH--------HHHHHHHHHHHHHCCcEEEEEeCCHH
Q psy6322 14 LHNPDLLILDEPTVGLD------------PVL--------SKSIWDRLVEMTENGKTVMITTHYIE 59 (128)
Q Consensus 14 ~~~p~lllLDEPt~gLD------------~~~--------~~~i~~~l~~~~~~g~tvi~~sH~l~ 59 (128)
+.+|+++++|-|...-- +.. ++.+.+.+.++.+.|..++++.-+++
T Consensus 219 ~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~ 284 (513)
T 3iyg_B 219 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIY 284 (513)
T ss_pred ecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 56899999998754221 111 22344567777777999999887664
No 433
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=20.26 E-value=82 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEeCCHHHHHHHHh
Q psy6322 33 LSKSIWDRLVEMTE-NGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 33 ~~~~i~~~l~~~~~-~g~tvi~~sH~l~~~~~~~d 66 (128)
...++.+.+.++.+ ...+|++|||--- +..+..
T Consensus 125 ~~~R~~~~l~~l~~~~~~~vlvVsHg~~-i~~l~~ 158 (213)
T 3hjg_A 125 FSQRVSRAWSQIINDINDNLLIVTHGGV-IRIILA 158 (213)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCHHH-HHHHHH
Confidence 34456667777653 3488999999643 333433
No 434
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=20.25 E-value=58 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=31.5
Q ss_pred hcCCCEEEEeCCCCC----------CC-HH--------HHHHHHHHHHHHHHCCcEEEEEeCCHHH
Q psy6322 14 LHNPDLLILDEPTVG----------LD-PV--------LSKSIWDRLVEMTENGKTVMITTHYIEE 60 (128)
Q Consensus 14 ~~~p~lllLDEPt~g----------LD-~~--------~~~~i~~~l~~~~~~g~tvi~~sH~l~~ 60 (128)
+.+|+++++|-|..- ++ +. .++.+...+.++.+.|..++++.-+++.
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~ 299 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDD 299 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCH
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCH
Confidence 468999999999332 11 11 1233567777777778899999877754
No 435
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=20.23 E-value=1.7e+02 Score=21.01 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=24.4
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q psy6322 23 DEPTVGLDPVLSKSIWDRLVEMTENGKTVMITT 55 (128)
Q Consensus 23 DEPt~gLD~~~~~~i~~~l~~~~~~g~tvi~~s 55 (128)
|+...++|+.....+.+.|..+.+.|.-+++++
T Consensus 22 ~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVh 54 (247)
T 2a1f_A 22 GEDGLGIDPAILDRMAVEIKELVEMGVEVSVVL 54 (247)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333567899999999999999877776655553
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=20.12 E-value=1.7e+02 Score=20.92 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHHHHCCcEEEEEeCC
Q psy6322 16 NPDLLILDEPTV--------GLDPVLSKSIWDRLVEMTENGKTVMITTHY 57 (128)
Q Consensus 16 ~p~lllLDEPt~--------gLD~~~~~~i~~~l~~~~~~g~tvi~~sH~ 57 (128)
++.+|++||--. ..+......+.+.+.+. ..+..+|+++..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCCEEEEEeCCh
Confidence 688999999742 23666666777766653 235667777764
No 437
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=20.06 E-value=31 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=18.9
Q ss_pred HHHHHHHHHHH----HHCCcEEEEEeCCHHHHHHHHh
Q psy6322 34 SKSIWDRLVEM----TENGKTVMITTHYIEEARLLCA 66 (128)
Q Consensus 34 ~~~i~~~l~~~----~~~g~tvi~~sH~l~~~~~~~d 66 (128)
..++...+.++ ...+.+|++|||-- .+..+..
T Consensus 180 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~-~i~~l~~ 215 (268)
T 4eo9_A 180 VTRFLPYFTDVIVPDLRTGRTVLIVAHGN-SLRALVK 215 (268)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCHH-HHHHHHH
Confidence 34455555542 23578999999964 3444443
Done!