RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6322
(128 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 106 bits (267), Expect = 3e-29
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 12/102 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GG ++R S+A+ALLH+P+LLILDEPT GLDP + IW+ L E+ + G T++++TH +E
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
EA LC + + ++ +G ++AE +P L +
Sbjct: 199 EAEELCDR-----------VIILNDGKIIAEGTPEELKEKFG 229
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 102 bits (258), Expect = 6e-29
Identities = 34/65 (52%), Positives = 49/65 (75%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG ++R +LA ALLH+P+LLILDEPT GLDP + W+ L E+ + GKT+++++H +EE
Sbjct: 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157
Query: 61 ARLLC 65
A LC
Sbjct: 158 AERLC 162
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 103 bits (258), Expect = 9e-28
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +RR +A +L+H PD+L LDEPT GLDP ++IWD + + E G T+++TTHY+EE
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE 186
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHNS 120
A LC + I ++ G ++AE +P L R D+LE+ + L+ S
Sbjct: 187 ADKLCDR-----------IAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVS 235
Query: 121 KKGTYLT 127
L
Sbjct: 236 MLIAELG 242
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 88.8 bits (221), Expect = 1e-23
Identities = 35/69 (50%), Positives = 47/69 (68%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R +LA ALL NPDLL+LDEPT GLDP + + + L E+ E G+TV+I TH E
Sbjct: 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142
Query: 61 ARLLCAKLY 69
A L ++
Sbjct: 143 AELAADRVI 151
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 90.5 bits (225), Expect = 1e-23
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 12/97 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GG +RR +A +L+H P++L LDEPT+GLDP +W+ + ++ E G T+++TTHY+E
Sbjct: 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
EA LC + + ++ G ++AE +P L
Sbjct: 194 EAEQLCDR-----------VAIIDHGRIIAEGTPEEL 219
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 86.4 bits (214), Expect = 2e-21
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 11/99 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +RR +LA AL+++PD+L+LDEPT GLDP +W+RL + GKT+++TTH++EE
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
A LC +L C ++ EG +AE +P +L+
Sbjct: 201 AERLCDRL-C----------VIEEGRKIAEGAPHALIES 228
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 84.1 bits (209), Expect = 4e-21
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 12/96 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +R+ SLA+AL+ P +L+LDEPT GLDP ++IWD ++E+ + +++++TTH ++E
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDE 194
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
A LC + I +M +G L SP L
Sbjct: 195 AEALCDR-----------IAIMSDGKLRCIGSPQEL 219
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 84.1 bits (208), Expect = 2e-20
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 11/97 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +RR +LA AL+++P LLILDEPT GLDP IW+RL + GKT+++TTH++EE
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
A LC +L EA G +AE P +L+
Sbjct: 235 AERLCDRLCVLEA-----------GRKIAEGRPHALI 260
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 81.5 bits (202), Expect = 4e-20
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYIE 59
GGQ++R ++A L P++L+LDEPT GLDP + + + L + E GKT++I TH +E
Sbjct: 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
++ ++ +G +LA+ PA +
Sbjct: 201 LVLEYADRVV-----------VLDDGKILADGDPAEIFND 229
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 82.7 bits (204), Expect = 4e-20
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +RR +LA AL+++P LLILDEPT GLDP IW+RL + GKT+++TTH++EE
Sbjct: 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197
Query: 61 ARLLCAKLYCEEA 73
A LC +L E+
Sbjct: 198 AERLCDRLCVLES 210
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 77.9 bits (193), Expect = 6e-19
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A L +PD+L+LDEPT GLDP + + + L ++ GKT++I TH ++
Sbjct: 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL 196
Query: 61 ARLLCAKLYC 70
L ++
Sbjct: 197 LLELADRVIV 206
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 74.3 bits (183), Expect = 2e-17
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GG +RR +A ALLH P LL+LDEPTVGLDP +I + + + G +V+ TH ++
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVD 194
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQL 112
E + R + ++ G +LA+ + A L LE AFL L
Sbjct: 195 EIE--------ADDR----LVVLHRGRVLADGAAAELRGATGGADLEAAFLAL 235
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 73.2 bits (180), Expect = 8e-17
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G +++ ++A AL+H+P +L+LDEPT GLD + D + ++ G+ V+ ++H ++E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQE 117
LC +I ++ +G ++ E S +L AR + +LE F +L+E
Sbjct: 197 EALC----------DRVI-VLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEE 241
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 71.4 bits (176), Expect = 1e-16
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +LA AL +PD+L+LDEPT LDP+ + + L + G TV++ TH ++
Sbjct: 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162
Query: 60 EARLLC 65
EA L
Sbjct: 163 EAARLA 168
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 71.9 bits (177), Expect = 1e-16
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
G Q++ A++H+P+LLILDEP GLDPV + + D + E+ GKTV+++TH +E
Sbjct: 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190
Query: 61 ARLLC 65
LC
Sbjct: 191 VEELC 195
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.9 bits (172), Expect = 9e-16
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +RR +A AL+ +P +LI+DEPT GLDP + L E+ E+ + V+++TH +E+
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHIVED 191
Query: 61 ARLLCAKL 68
LC ++
Sbjct: 192 VESLCNQV 199
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 68.4 bits (168), Expect = 3e-15
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G ++R +A+ALL NPDLLILDEPT GLDP K + + ++ + + G TV+I++H + E
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEI 189
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAE 90
+ + + IG++ +G L+ E
Sbjct: 190 QKVADR-----------IGIINKGKLIEE 207
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 69.7 bits (171), Expect = 3e-15
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ+RR +LA L PD L+ DEPT GLDP K I + + + GKT+++ TH
Sbjct: 168 GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 67.9 bits (167), Expect = 4e-15
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R LA AL+ +PDLL+LDEP G+DP + I++ L E+ G T+++ TH +
Sbjct: 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194
Query: 61 ARLLCAKLYC 70
++
Sbjct: 195 VLEYFDRVLL 204
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 68.4 bits (168), Expect = 4e-15
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R LA AL NPDLL+LDEP G+D K I+D L E+ + GKTV++ TH +
Sbjct: 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL 201
Query: 61 AR 62
Sbjct: 202 VM 203
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 67.8 bits (166), Expect = 5e-15
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 11/89 (12%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G +++ ++A AL+H+P +L+LDEPT GLD + ++++ + + ++ GK ++ +TH ++E
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEV 199
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAE 90
LC + + ++ G ++ E
Sbjct: 200 ERLCDR-----------VVVLHRGRVVYE 217
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 69.7 bits (171), Expect = 5e-15
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 19/115 (16%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG++RR +LA ALLH+ L +LDEPT GLDP+ + + L E E GKT+++ TH
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTH---- 531
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQL 115
RL + I ++ G ++ E + A L+A + +L QL
Sbjct: 532 -RLR-------GLERMDRIIVLDNGKIIEEGTHAELLAN------NGRYKRLYQL 572
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 67.2 bits (165), Expect = 5e-15
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+++R S+A+ L+ NP LL LDEPT GLD + + L + + G+T++ + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 68.0 bits (167), Expect = 7e-15
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG ++R ++A AL P LL+LDEP LD + + + D L+ + E KTV++ TH ++
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192
Query: 60 EARLLCAKLYCEEARQAHIIGLMR 83
EA L ++ R I +
Sbjct: 193 EAVYLADRVVVLSNRPGRIGEELE 216
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 66.3 bits (163), Expect = 8e-15
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A ALL +P +LILDE T LDP I + L + + GKTV++ H
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAH---- 153
Query: 61 ARLLCAKLYCEEARQAHIIGLMREG 85
RL R A I ++ +G
Sbjct: 154 -RL-------STIRDADRIIVLDDG 170
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 69.3 bits (169), Expect = 9e-15
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG +R+ S A+AL+ P L++LDEPT G+DP + +W+ +V + G+ V++T+H +EE
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132
Query: 61 ARLLCAKL 68
LC +L
Sbjct: 2133 CEALCTRL 2140
Score = 66.6 bits (162), Expect = 7e-14
Identities = 31/78 (39%), Positives = 53/78 (67%), Gaps = 9/78 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG QR+ S+A+A + + +++LDEPT G+DP +SIWD L++ +G+T++++TH+++E
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDE 1122
Query: 61 ARLLC--------AKLYC 70
A LL +LYC
Sbjct: 1123 ADLLGDRIAIISQGRLYC 1140
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 65.6 bits (161), Expect = 3e-14
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R ++A AL ++P +++ DEPT LD K + + L E+ + G T+++ TH E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
Query: 60 EARL 63
A
Sbjct: 203 LAEY 206
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 65.9 bits (161), Expect = 6e-14
Identities = 32/112 (28%), Positives = 65/112 (58%), Gaps = 13/112 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A L P++++LDEPT GLDP+ + I L ++ + G T++I+TH ++
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQL 112
+ K+Y +M +G ++ E +P + + +++++ A L+L
Sbjct: 200 VPVYADKVY-----------VMSDGKIIKEGTPKEVFS--DIETIRKANLRL 238
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 65.8 bits (161), Expect = 6e-14
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G Q++ A++H P+LLILDEP GLDPV + + D + E+ E G T++ ++H +E
Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193
Query: 62 RLLCAKL 68
LC +L
Sbjct: 194 EELCDRL 200
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 64.8 bits (159), Expect = 6e-14
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG ++R +LA AL +PD+L+LDEP LD + + + + L+++ E GKTV++ TH I+
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193
Query: 60 EARLLCAKLYCEEARQAHIIGLMR 83
EA L ++ AR I+ +
Sbjct: 194 EAVFLADRVVVLSARPGRIVAEVE 217
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 65.0 bits (159), Expect = 7e-14
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEE 60
GQ+ R +A ALLH P++L LDEPT+GLD V ++I + L E E G TV++T+HY+++
Sbjct: 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD 216
Query: 61 ARLLCAKLYC 70
L ++
Sbjct: 217 IEALARRVLV 226
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 64.6 bits (158), Expect = 8e-14
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A ALL DLLI DEPT GLD + + + + E+ GK V++ TH E
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188
Query: 61 ARLLC 65
+C
Sbjct: 189 LAKVC 193
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 64.1 bits (157), Expect = 1e-13
Identities = 25/57 (43%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTH 56
GGQQ+R ++A AL++NP +++ DEPT LD +K + + L E+ E GKT+++ TH
Sbjct: 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 64.4 bits (158), Expect = 1e-13
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT---ENGKTVMITTHY 57
GG ++R +LA AL +P+LL+ DEPT GLDP+ S I D L+ + E G T ++ TH
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI-DDLI-RSLKKELGLTSIMVTHD 196
Query: 58 IEEARLLCAKLY 69
++ A + ++
Sbjct: 197 LDTAFAIADRIA 208
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 63.4 bits (155), Expect = 2e-13
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q+R ++A A+++ P +L+ DEPT LDP LS I E+ G TV++ TH
Sbjct: 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 64.9 bits (159), Expect = 2e-13
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 19/117 (16%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R +LA ALL P +L+LDE T LDP I L+++ + G+TV+I H
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAH---- 666
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQE 117
RL R A I ++ +G ++ + S L+A+ + +L Q QE
Sbjct: 667 -RL-------STIRSADRIIVLDQGKIVEQGSHEELLAQGG------LYARLYQQQE 709
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 64.3 bits (157), Expect = 3e-13
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEE 60
GQ+ R LA ALLH P +L LDEPTVGLD +I + L E E TV++TTH ++
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD 219
Query: 61 ARLLCAKLY 69
LC ++
Sbjct: 220 IATLCDRVL 228
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 62.3 bits (152), Expect = 4e-13
Identities = 22/58 (37%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58
GG+++R +LA LL + +++LDEPTVGLDP+ + + + E+ ++ KT++ TH++
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHL 157
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 63.1 bits (154), Expect = 4e-13
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 12/97 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQQ+R ++A AL PDL++ DEP LDP SK + D L + E+G TV+I H ++
Sbjct: 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
AK Y + I+GL + G ++ + +P+ L
Sbjct: 208 -----LAKKYAD-----RIVGL-KAGEIVFDGAPSEL 233
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 62.7 bits (153), Expect = 4e-13
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q+R ++A A++++P LL+ DEPT LDP LS+ I D L + + G TV++ TH
Sbjct: 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 62.9 bits (154), Expect = 5e-13
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL +P +++ DEPT LDP L + D + ++ E G T++I TH +
Sbjct: 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
AR + ++ M +G ++ E P
Sbjct: 199 AREVADRVI-----------FMDQGKIIEEGPPEEF 223
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 62.5 bits (153), Expect = 5e-13
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R +LA AL P LL+LDEP LD L + + + L E+ E G T + TH E
Sbjct: 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLA 89
EA A I +M EG ++
Sbjct: 193 EA-----------LALADRIAVMNEGRIVQ 211
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 62.9 bits (153), Expect = 8e-13
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G ++R LA AL+H+P +LILDEPT GLDP I +++ KT++++TH ++E
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-RNVIKNIGKDKTIILSTHIMQEV 195
Query: 62 RLLC 65
+C
Sbjct: 196 EAIC 199
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 62.3 bits (152), Expect = 8e-13
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG++RR S+AV LL +P +LILDEPT GLD + ++ L ++ + V++T H
Sbjct: 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 62.3 bits (152), Expect = 9e-13
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +A AL +P LL++DEP LDP+ + + + + GKT++ TH I+
Sbjct: 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQ 116
EA L A I +M+ G ++ +P ++ D + F+ +L
Sbjct: 198 EAFRL-----------ADRIAIMKNGEIVQVGTPDEILRSPANDFVAE-FVGADRLL 242
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 61.8 bits (151), Expect = 1e-12
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R ++A AL NP LLI DEPT LD + I D L ++ E G T++ TH +
Sbjct: 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207
Query: 60 EARLLCAKLY 69
+ ++
Sbjct: 208 VVAKIADRVA 217
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 62.2 bits (151), Expect = 1e-12
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL+ P +L+ DEPT LDP ++ I + E+ E G T +I TH +E
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
Query: 61 ARLLCAK-LYCEEARQAHII 79
AR ++ +Y E HI+
Sbjct: 204 ARKTASRVVYME---NGHIV 220
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 62.2 bits (152), Expect = 1e-12
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN---GKTVMITTHY 57
GG ++R +LA A+ +P+LL LDEPT GLDP+ + I D L+ N G TV++ TH
Sbjct: 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELI-RELNDALGLTVIMVTHD 205
Query: 58 IEEARLLCAKLY 69
++ + ++
Sbjct: 206 LDSLLTIADRVA 217
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 62.3 bits (152), Expect = 1e-12
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +A AL +P +L++DEP LDP+ K + + + E+ + GKT++ TH I+
Sbjct: 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
EA L + I +M G ++ ++P ++A
Sbjct: 198 EALKLADR-----------IAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 61.6 bits (150), Expect = 1e-12
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL+ P +L+ DEPT LDP ++ I + E+ E G T +I TH +E
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203
Query: 61 ARLLCAK-LYCEEARQAHII 79
AR ++ +Y E HI+
Sbjct: 204 ARKTASRVVYME---NGHIV 220
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 61.3 bits (149), Expect = 2e-12
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G ++R +A+ALL++P LLILDEPT GLDP+ + + + + E G TV++++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVL 87
+ L A IG++ EGVL
Sbjct: 188 QQL-----------ADHIGIISEGVL 202
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 60.7 bits (148), Expect = 2e-12
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q+R +LA A+L P L++ DEPT LDP + D L+E+ + GKT++I TH
Sbjct: 137 GGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 61.4 bits (149), Expect = 2e-12
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 14/115 (12%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEE 60
GQ++R ++A L+ P +L+LDEPT GLDP+ I LVEM + G T++I TH I+
Sbjct: 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQL 115
L C ++ +M+EG ++ + +P + A + + L L+L ++
Sbjct: 205 VPLYCDNVF-----------VMKEGRVILQGNPKEVFAEKEM--LRKVNLRLPRI 246
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 60.2 bits (147), Expect = 3e-12
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL NP +++ DEPT LDP L + D + ++ E G T+++ TH +
Sbjct: 138 GGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197
Query: 61 AR 62
AR
Sbjct: 198 AR 199
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 60.8 bits (147), Expect = 3e-12
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R S+A AL P++L+ DEPT LDP L + + ++ E GKT+++ TH +
Sbjct: 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
AR + +H+I + +G + E +P L
Sbjct: 215 ARHV----------SSHVI-FLHQGKIEEEGAPEQLFG 241
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 59.7 bits (145), Expect = 4e-12
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R ++A A+ PD+L+LDEPT GLDP + + L + G TV+I+TH ++
Sbjct: 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189
Query: 61 A 61
A
Sbjct: 190 A 190
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 61.0 bits (149), Expect = 5e-12
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+QRR +A ALLH+ LL+LDEPT GLD + I + L E +N KTV++ TH
Sbjct: 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITH 532
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 59.4 bits (145), Expect = 5e-12
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKS-IWDRLVEMTENGKTVMITTHYIE 59
GG Q++ LA L +P +LILDEPT G+D V +K+ I+ + E+ + GK V++ + ++
Sbjct: 107 GGNQQKVVLARWLARDPRVLILDEPTRGVD-VGAKAEIYRLIRELADAGKAVLLISSELD 165
Query: 60 EARLLC 65
E LC
Sbjct: 166 ELLGLC 171
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 60.0 bits (146), Expect = 6e-12
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE--MTENGKTVMITTHYIE 59
G+QRR +A AL+ +P+LLILDEP GLD + + + +RL E + ++ TH+ E
Sbjct: 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234
Query: 60 EA 61
E
Sbjct: 235 EI 236
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 60.0 bits (146), Expect = 6e-12
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG Q+R LA AL +PD+L++DE LDP++ + + D L+ + E KT++ TH ++
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLL 88
EA R I +M++G L+
Sbjct: 223 EA-----------LRLGDRIAIMKDGRLV 240
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 60.2 bits (146), Expect = 6e-12
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ R+ ++ L NPD+++LDEPT GLDP + + L + T+ KT+++ +H +
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN-VDSLETAFLQLSQLQEH 118
E AR A + +M+EG ++++ SP L + + ++ QLQ
Sbjct: 208 EV-----------ARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQYD 256
Query: 119 NSKK 122
+K
Sbjct: 257 FEQK 260
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 60.6 bits (148), Expect = 7e-12
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKS-IWDRLVEMTENGKTVMITTHYIE 59
GG Q++ LA L +P +LILDEPT G+D V +K+ I+ + E+ GK +++ + +
Sbjct: 404 GGNQQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMISSELP 462
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
E L I +MREG ++ E
Sbjct: 463 ELLGLS-----------DRILVMREGRIVGELDREEA 488
Score = 44.4 bits (106), Expect = 3e-06
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
Q++ +A AL + +LILDEPT L ++ ++D + + G ++ +H ++E
Sbjct: 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207
Query: 61 ARLLC 65
+
Sbjct: 208 VFEIA 212
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 60.0 bits (146), Expect = 8e-12
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R ++A AL+ P +++ DEP LDP +K + D L ++ + G TV++ H ++
Sbjct: 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209
Query: 60 EARLLCAKLY 69
A+ ++
Sbjct: 210 LAKKYADRII 219
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 60.4 bits (147), Expect = 8e-12
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+++R + A LL +P LL DEPT GLD ++ S+ L + + GKT++ T H
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 59.5 bits (145), Expect = 1e-11
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R ++A AL+ P L++ DEP LDP S+ + D L + E G TV+++ H ++
Sbjct: 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206
Query: 60 EARLLCAKLYCEEARQAHIIGL 81
AR Y + I+GL
Sbjct: 207 LAR-----EYAD-----RIVGL 218
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 58.6 bits (143), Expect = 2e-11
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+Q+ ++A AL+ P LL+LDEP+ GL P + + I++ + E+ + G T+++
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
A + + Y ++ G ++ E + A L+A
Sbjct: 195 ALEIADRAY-----------VLERGRVVLEGTAAELLA 221
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 59.3 bits (144), Expect = 2e-11
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ RR ++A L P++L+LDEPT GLDP K + + ++ E G T ++ TH +E
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
+A AR A I +M +G + + +P + A +
Sbjct: 208 DA-----------ARYADQIVVMHKGTVFLQGTPREIFADPD 238
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 58.8 bits (142), Expect = 2e-11
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++++LDEPT LDP+ ++ I L E++EN T++I TH I +
Sbjct: 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHNIGQ 207
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFL 110
A R A I M G L+ E P + R + L +L
Sbjct: 208 A-----------IRIADYIAFMYRGELI-EYGPTREIVERPKNKLTEEYL 245
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 59.0 bits (143), Expect = 2e-11
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 14/111 (12%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQ++R ++A L +PD+++LDEP LDP +++ + L + GKTV++ TH ++ A
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQL 112
A A + +++EG +LAE SL+ ++ +E A L+L
Sbjct: 202 -----------AEWADQVIVLKEGRVLAEGDK-SLLTDEDI--VEQAGLRL 238
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 58.5 bits (142), Expect = 3e-11
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++L+LDEPT LDP+ + I + + E+ + T++I TH +++
Sbjct: 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQ 205
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESP 93
A AR + +G L+ E P
Sbjct: 206 A-----------ARISDRTAFFYDGELV-EYGP 226
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 58.4 bits (141), Expect = 3e-11
Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL NPD+L++DEPT LDPV ++ I + ++++ E T++I TH +++
Sbjct: 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK-YTIVIVTHNMQQ 216
Query: 61 A 61
A
Sbjct: 217 A 217
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 57.8 bits (141), Expect = 3e-11
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GQQRR +A AL +P LL+LDEP GL+P ++ + + + E+ E G TV++ H ++
Sbjct: 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
L ++ + +G ++AE +P + V
Sbjct: 206 VMSLADRVTV-----------LDQGRVIAEGTPDEVRNNPRV 236
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 58.7 bits (142), Expect = 3e-11
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59
GGQ+RR ++A L P++LI DEPT GLDP + +++ N KTV + TH +E
Sbjct: 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 57.9 bits (141), Expect = 3e-11
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG++RR +A AL NP L+LDEP G+DP+ + I + + + G V+IT H + E
Sbjct: 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
+ + Y ++ EG +LAE +P + A
Sbjct: 196 TLSITDRAY-----------IIYEGKVLAEGTPEEIAA 222
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 57.1 bits (139), Expect = 3e-11
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GG+++R LA AL P +L+LDEPT LD + + L + E GKTV++ H +
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAE 90
A AR A + L+++G ++A+
Sbjct: 160 LA-----------ARYADRVILLKDGRIVAQ 179
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 58.4 bits (142), Expect = 3e-11
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R ++A AL +NP +L+ DE T LDP ++SI + L ++ E G T+++ TH +E
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
Query: 60 EARLLC 65
+ +C
Sbjct: 204 VVKRIC 209
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 58.0 bits (141), Expect = 3e-11
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYIE 59
GG+++R +A AL +L+LDEPT LD + + L + E G TV++ H +
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
A AR A + L+++G ++A+ +P ++
Sbjct: 201 LA-----------ARYADHLILLKDGKIVAQGTPEEVL 227
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 57.7 bits (140), Expect = 3e-11
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG+++R +LA AL P+LL+LDEP LD L + L ++ +N V+ TH +
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
Query: 60 EARLLCAKLYC-EEARQAHI 78
EA L ++ E+ R +I
Sbjct: 194 EAEYLADRIVVMEDGRLQYI 213
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 58.4 bits (142), Expect = 4e-11
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GG ++R +A+AL P LLI DEPT LD I D L ++ E G V+ TH +
Sbjct: 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216
Score = 44.9 bits (107), Expect = 2e-06
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R ++A AL P LLILDEP LD + + + L ++ E G T + +H +
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491
Query: 60 EARLLCAKLYCEEARQAHIIGLMREG 85
R + + +M +G
Sbjct: 492 VVRYIA-----------DRVAVMYDG 506
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 57.6 bits (140), Expect = 5e-11
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG++RR +A AL NP ++LDEP G+DP+ I + + + G V+IT H + E
Sbjct: 142 GGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE 201
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
+C + Y ++ +G +LAE SP ++
Sbjct: 202 TLDICDRAY-----------IISDGKVLAEGSPEEIVN 228
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 57.7 bits (140), Expect = 5e-11
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI-TTHYIE 59
GGQ++R ++A AL+ P LLILDEPT LD + I + L+E+ + + +H +
Sbjct: 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA 203
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPAS 95
+C + I +M G ++ E P
Sbjct: 204 LVEHMCDR-----------IAVMDNGQIV-EIGPTE 227
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 57.2 bits (139), Expect = 5e-11
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R LA AL + P++L+LDEPT LDP+ + I + + E+ + T++I TH +++
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQ 202
Query: 61 A 61
A
Sbjct: 203 A 203
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 57.9 bits (140), Expect = 5e-11
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG Q+R LA AL PD+L++DE LDP++ S+ D L ++ KT++ TH ++
Sbjct: 132 GGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191
Query: 60 EA 61
EA
Sbjct: 192 EA 193
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 57.7 bits (140), Expect = 8e-11
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ +R +LA ALL LL+LDEPT LD + I L E+ + KTV++ TH
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITH---- 513
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVD 103
RL E+A A I ++ G L+ + + L ++ +
Sbjct: 514 -RL-------EDAADADRIVVLDNGRLVEQGTHEELSEKQGLY 548
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 56.4 bits (137), Expect = 1e-10
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++L++DEPT LDP+ + I + + E+ + T++I TH +++
Sbjct: 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK-YTIVIVTHNMQQ 210
Query: 61 A 61
A
Sbjct: 211 A 211
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 56.6 bits (136), Expect = 1e-10
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL +P++L+ DEPT LDP+ + SI + L+ +N T++I TH +++
Sbjct: 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELISDLKNKVTILIVTHNMQQ 222
Query: 61 A 61
A
Sbjct: 223 A 223
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 56.4 bits (136), Expect = 1e-10
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG++RR +A AL NP ++LDEP G+DP+ I + + ++G V+IT H + E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
+C + Y ++ +G L+A +P ++ +V
Sbjct: 200 TLAVCERAY-----------IVSQGHLIAHGTPTEILQDEHV 230
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 54.7 bits (133), Expect = 2e-10
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
G+++ +A AL N LLILDEPT L P + ++ + + G V+ +H ++E
Sbjct: 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144
Query: 61 ARLLC 65
+
Sbjct: 145 VFEIA 149
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 56.3 bits (136), Expect = 2e-10
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ +P+++++DEP LDPV + I D + E+ E TV+I TH +++
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQ 241
Query: 61 A 61
A
Sbjct: 242 A 242
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 56.5 bits (137), Expect = 2e-10
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ +R +LA A L + LL+LDEPT LD + + L + + G+TV++ TH +
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLAL 519
Query: 61 ARLL 64
A L
Sbjct: 520 AALA 523
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 56.1 bits (136), Expect = 3e-10
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 24/100 (24%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVL-------SKSIWDRLVEMTENGKTVMI 53
GGQ++R +LA AL+ P + +LDEP LD L K + +RL G T +
Sbjct: 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL------GTTTIY 189
Query: 54 TTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESP 93
TH EA L A I +M +G + +P
Sbjct: 190 VTHDQVEAMTL-----------ADRIVVMNDGRIQQVGTP 218
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 55.5 bits (134), Expect = 3e-10
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ RR ++A L P +L+LDEPT GLDP K + ++ ++G T+++ TH +++
Sbjct: 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD 207
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 55.1 bits (133), Expect = 4e-10
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL P++++ DEPT LDP L + + ++ E G+T+++ TH +
Sbjct: 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF 214
Query: 61 AR 62
AR
Sbjct: 215 AR 216
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 55.1 bits (133), Expect = 4e-10
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ PD+L++DEP LDP+ + + + + E+ +N T++I TH +++
Sbjct: 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-YTIIIVTHNMQQ 224
Query: 61 A 61
A
Sbjct: 225 A 225
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 55.1 bits (133), Expect = 4e-10
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++L++DEPT LDP+ S + L++ + T++I TH +++
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPI-STLKIEELIQELKKDYTIVIVTHNMQQ 207
Query: 61 A 61
A
Sbjct: 208 A 208
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 55.1 bits (133), Expect = 4e-10
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 17/127 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GGQ+RR ++A + P +LILDEPT GLDP I +++ E+ + T+++ +H +E
Sbjct: 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFL---QLSQLQ 116
+ A+ A I +M +G + +P + + V++LE+ L Q++ L
Sbjct: 207 DV-----------AKLADRIIVMNKGKCELQGTPREVF--KEVETLESIGLAVPQVTYLV 253
Query: 117 EHNSKKG 123
KKG
Sbjct: 254 RKLRKKG 260
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 55.1 bits (133), Expect = 5e-10
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG Q+R LA AL ++PD+L++DE LDP++ + D L+E+ KT++ TH ++
Sbjct: 167 GGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
EA R I +M++G ++ +P ++
Sbjct: 227 EA-----------LRIGDRIAIMKDGEIVQVGTPEEILLN 255
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 54.9 bits (133), Expect = 5e-10
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56
GG ++R +A+AL NP LLI DEPT LD + I D L E+ E G +++ TH
Sbjct: 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 54.5 bits (131), Expect = 7e-10
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L P++L+LDEPT LDP + I D L++ T+MI TH +++
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED-LIQELRGSYTIMIVTHNMQQ 243
Query: 61 A 61
A
Sbjct: 244 A 244
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 54.4 bits (131), Expect = 7e-10
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG ++R +A AL P LL+LDEP LD + + + + L+++ E GK V++ TH IE
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194
Query: 60 EARLLCAKL 68
EA L +L
Sbjct: 195 EALFLATRL 203
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 54.9 bits (132), Expect = 8e-10
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+++R S+A +L NP LLILDEPT GLD + + L + + GKT++ + H
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 54.0 bits (130), Expect = 9e-10
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN--GKTVMITTHYI 58
GG+ +R S+A L +NP++L+LDEPT LDP S I + L+ +N TV+ TH +
Sbjct: 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPT-STEIIEELIVKLKNKMNLTVIWITHNM 192
Query: 59 EEAR 62
E+A+
Sbjct: 193 EQAK 196
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 53.9 bits (130), Expect = 1e-09
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL P L++ DEPT LDP L + + ++ E G T++I TH I
Sbjct: 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198
Query: 61 ARLLCAKL-YCEEARQAH 77
A + ++L + ++ R A
Sbjct: 199 AEKVASRLIFIDKGRIAE 216
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 54.1 bits (130), Expect = 1e-09
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ RR ++A + + P++L LDEP GLDP K + + + G TV++ TH +++
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
A A + ++ G L+ SP + + +
Sbjct: 208 V-----------AEYADDVLVLEHGKLIKHASPKEIFSDKE 237
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 54.1 bits (131), Expect = 1e-09
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G+Q+R + AL LLILDEPT L P + +++ L + GKT++ TH ++E
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV 203
Query: 62 RLLC 65
+
Sbjct: 204 MAIA 207
Score = 41.4 bits (98), Expect = 3e-05
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG Q++ LA L PDLLI +PT GLD + I +RL+E+ + GK V++ + ++E
Sbjct: 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDE 465
Query: 61 ARLLCAKLY 69
L ++
Sbjct: 466 ILELSDRIA 474
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 53.7 bits (130), Expect = 1e-09
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GQQRR +A AL P LL+LDEP GL+P ++ + + + E+ + G T+++ H ++
Sbjct: 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK 211
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPA 94
L ++ + G ++AE +P
Sbjct: 212 LVMGLADRIVV-----------LNYGEVIAEGTPE 235
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 52.8 bits (127), Expect = 2e-09
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q+R ++A A++++P +LI DEPT LDP + I + L ++ + G TV++ TH
Sbjct: 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 53.3 bits (128), Expect = 2e-09
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L NP+++++DEP LDP+ + I D L+E + TV+I TH +++
Sbjct: 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED-LIEDLKKEYTVIIVTHNMQQ 210
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLL 88
A AR + G M G L+
Sbjct: 211 A-----------ARVSDYTGFMYLGKLI 227
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 53.0 bits (127), Expect = 2e-09
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A + PD++++DEPT LDP+ + I D +VE+ + T++I TH +++
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQ 208
Query: 61 A 61
A
Sbjct: 209 A 209
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 53.1 bits (127), Expect = 2e-09
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P LL+LDEPT LDP+ S I + L E++ N +M+ TH +++
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMV-THNMQQ 203
Query: 61 AR 62
+
Sbjct: 204 GK 205
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 53.2 bits (127), Expect = 2e-09
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 2 GQQRRTSLAVALL---HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
G +R +L +ALL LL++DEP GL P L + + + L E++E G ++ TTH
Sbjct: 193 GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTH 250
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 53.1 bits (127), Expect = 2e-09
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L PD+++LDEPT LDP+ S I + L+E+ + T+++ TH + +
Sbjct: 151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSMHQ 209
Query: 61 A 61
A
Sbjct: 210 A 210
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 53.0 bits (128), Expect = 2e-09
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R +A AL +NP +L+ DE T LDP ++SI L ++ E G T+++ TH +E
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202
Query: 60 EARLLC 65
+ +C
Sbjct: 203 VVKRIC 208
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 53.6 bits (129), Expect = 2e-09
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A ALL NP +LILDE T LD I D L ++ + G+T +I H
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAH---- 522
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
RL + A I ++ G ++ + L+A+
Sbjct: 523 -RL-------STIKNADRIIVLDNGRIVERGTHEELLAKGG 555
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 52.9 bits (127), Expect = 2e-09
Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A + PD++++DEPT LDP+ + I + + E+ +N T++I TH +++
Sbjct: 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQ 206
Query: 61 AR 62
AR
Sbjct: 207 AR 208
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 52.5 bits (127), Expect = 2e-09
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVMITTHYIE 59
GGQ++R SLA A+ + D+ +LD+P +D + + I++ + + N KT ++ TH ++
Sbjct: 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189
Query: 60 EARLLCAKLYCEEARQAHIIGLMREG 85
A I+ ++ G
Sbjct: 190 ---------LLPHA--DQIV-VLDNG 203
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 53.1 bits (128), Expect = 3e-09
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+++R +LA ALL + +L+LDEPT LD + + + L+ G+TV++ TH
Sbjct: 474 GGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS-GRTVVLITH 528
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 52.7 bits (127), Expect = 3e-09
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG+Q+R ++A AL+ NP +L+LDEP LD + + + L ++ E G TV+ TH E
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 60 EARLL 64
EA L
Sbjct: 192 EAWAL 196
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 52.8 bits (127), Expect = 3e-09
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R ++A L P+ +I DEPT LDP + + + + E+ + G T+++ THY+E
Sbjct: 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206
Query: 60 EA 61
EA
Sbjct: 207 EA 208
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 51.8 bits (125), Expect = 4e-09
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++ +LA ALL++P +L+LDEPT +D + + +RL ++ KT++I TH
Sbjct: 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITH 197
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 52.7 bits (127), Expect = 4e-09
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +LA AL+ P +L+LDEP LD L + + L E+ G T + TH E
Sbjct: 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
EA + + I +M +G + +P +
Sbjct: 199 EALAMSDR-----------IAVMNDGRIEQVGTPEEI 224
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 52.3 bits (125), Expect = 4e-09
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ P++L+LDEP LDP+ ++ + + +VE+ ++ T+ + TH +++
Sbjct: 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIALVTHNMQQ 210
Query: 61 AR 62
A
Sbjct: 211 AI 212
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 51.9 bits (125), Expect = 5e-09
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GGQ++ SL +A LH P +L+LDE T LDP ++ + + ++ E K T ++ TH +E
Sbjct: 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210
Query: 60 EA 61
+A
Sbjct: 211 DA 212
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 52.1 bits (125), Expect = 6e-09
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L +P+++++DEP LDP+ + I D + E+ E TV++ TH +++
Sbjct: 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQ 261
Query: 61 A 61
A
Sbjct: 262 A 262
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 52.0 bits (124), Expect = 6e-09
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ RR ++A L P++L+LDEPT GLDP + + ++G+TV++ TH +++
Sbjct: 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206
Query: 61 ARLLCAKLYCEEARQAHII 79
+Y E + HII
Sbjct: 207 VADYADYVYLLE--KGHII 223
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 51.7 bits (124), Expect = 6e-09
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL P++++ DEPT LDP L + + + ++ + +T++I TH +
Sbjct: 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206
Query: 61 AR 62
AR
Sbjct: 207 AR 208
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 51.7 bits (124), Expect = 8e-09
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +LA AL+ P +L+LDEP LD L + L + E G T + TH E
Sbjct: 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
EA + + I +MR+G + +P +
Sbjct: 163 EAMTMSDR-----------IAIMRKGKIAQIGTPEEIYE 190
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 51.8 bits (125), Expect = 8e-09
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++ +LA ALL +P +L+LDEPT +D + DRL GKT+++ TH
Sbjct: 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTH 658
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.6 bits (123), Expect = 8e-09
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ +P +L++DEP LDP+ + + + + E+ + T++I TH +++
Sbjct: 149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQ 207
Query: 61 A 61
A
Sbjct: 208 A 208
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 51.1 bits (123), Expect = 9e-09
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A ALL +P +LILDE T LD + + L + +N +T + H
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN-RTTFVIAH---- 195
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARR 100
RL A I ++ +G ++ + L+A+
Sbjct: 196 -RL-------STIENADRIVVLEDGKIVERGTHEELLAQG 227
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 49.8 bits (120), Expect = 1e-08
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTH 56
GG++ R +LA LL NP+LL+LDEPT LD +SI + L E + TV++ +H
Sbjct: 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDL---ESI-EALEEALKEYPGTVILVSH 125
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 51.2 bits (122), Expect = 1e-08
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ PD+L++DEP LDP+ ++ + + +E+ E T+++ TH +++
Sbjct: 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIMVTHNMQQ 222
Query: 61 A 61
A
Sbjct: 223 A 223
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 51.0 bits (122), Expect = 1e-08
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R +A AL P +L+LDEP GLD + + + +E+ G +++TTH + +
Sbjct: 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175
Query: 61 ARLLCAKL 68
A C ++
Sbjct: 176 AMATCDRV 183
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 51.0 bits (122), Expect = 1e-08
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYIE 59
GGQ++R ++A L P ++ILDE T LDP + I + + +N TV+ TH I
Sbjct: 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI- 204
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESP 93
+EA A + ++ +G LLA+ SP
Sbjct: 205 -----------DEANMADQVLVLDDGKLLAQGSP 227
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.8 bits (121), Expect = 1e-08
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P +++LDEPT LDP+ S I + L+E+ +M+ TH +++
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMV-THNLQQ 208
Query: 61 A 61
A
Sbjct: 209 A 209
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 51.3 bits (123), Expect = 1e-08
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL+ NP +LI DE T LD I + E+ G+TV+I H
Sbjct: 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAH---- 650
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
RL R I ++ +G + L+A
Sbjct: 651 -RL-------STVRACDRIIVLEKGQIAESGRHEELLA 680
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 51.1 bits (122), Expect = 1e-08
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ + +LA L P+ LI DE T LDP ++ +R+ ++ E GKT++ TH +EE
Sbjct: 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE 198
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHNS 120
A I +M G ++ E P ++++ ++ +L L +L E+
Sbjct: 199 LHD------------ADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENLK 246
Query: 121 KKG 123
G
Sbjct: 247 MHG 249
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 50.3 bits (121), Expect = 2e-08
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R ++A A+L NP +L+LDE T LD + I L +++ G+T ++ H
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAH---- 194
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
RL A I ++++G ++ + L+A+ +
Sbjct: 195 -RL-------STIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 50.8 bits (121), Expect = 2e-08
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R ++A AL+ +++ DEP LDP ++ + D L ++ +N G TV++T H ++
Sbjct: 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214
Query: 60 EARLLCAKLYCEEARQAHI 78
A C ++ RQ H+
Sbjct: 215 YALRYCERIVA--LRQGHV 231
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 50.5 bits (121), Expect = 2e-08
Identities = 24/61 (39%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ PD+L++DEP LDP+ + +I D + E+ ++ T++I TH +++
Sbjct: 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQD-YTIVIVTHNMQQ 209
Query: 61 A 61
A
Sbjct: 210 A 210
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 49.5 bits (119), Expect = 2e-08
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++R LA AL NP +L+LDEP LD +++ + + G T ++ H
Sbjct: 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 50.8 bits (121), Expect = 2e-08
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN--GKTVMITTHYI 58
GG Q+R ++A A+ PD+L+LDEP LD + ++ + + + E T++ TH
Sbjct: 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199
Query: 59 EEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASL 96
++A L K G+M++G L A P +L
Sbjct: 200 DDALTLADK-----------AGIMKDGRLAAHGEPQAL 226
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 50.2 bits (120), Expect = 2e-08
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R +A AL P +L++DEPT +DPV + I + L E+ + V++T +
Sbjct: 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQA 211
Query: 61 ARL 63
AR+
Sbjct: 212 ARV 214
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 50.2 bits (120), Expect = 3e-08
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG+++R ++A + P +L+LDEPT GLDP K + D L ++ E G TV+ +TH ++
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
L ++ A I +M +G ++A + + +
Sbjct: 200 ----LVPEM-------ADYIYVMDKGRIVAYGTVEEIFLQ 228
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.2 bits (120), Expect = 3e-08
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L +P +++LDEPT LDP+ + I + L+ + ++ T+++ T +++
Sbjct: 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQ 209
Query: 61 A 61
A
Sbjct: 210 A 210
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.0 bits (120), Expect = 3e-08
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GGQ++R ++A L PD++ILDE T LDP + + + + ++ E TV+ TH +
Sbjct: 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL- 201
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
+EA QA + +M +G +L E +P +
Sbjct: 202 -----------DEAAQADRVIVMNKGEILEEGTPEEIFKS 230
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.9 bits (119), Expect = 3e-08
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++L+ DEPT LDP + I +E+ ++ T+++ TH+ ++
Sbjct: 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQ 207
Query: 61 A 61
A
Sbjct: 208 A 208
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 49.7 bits (119), Expect = 3e-08
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R +A AL NP LL+LDEP LD + + L+++ E GK V++ TH IE
Sbjct: 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190
Query: 60 EARLLCAKL 68
EA + +L
Sbjct: 191 EAVFMATEL 199
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 49.6 bits (119), Expect = 3e-08
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENG-KTVMITTHYIE 59
GGQ++R ++A L NP+++I DE T LDP + I +V++ + KT++ TH ++
Sbjct: 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204
Query: 60 EARLLCAKL 68
EA +L K+
Sbjct: 205 EA-ILADKV 212
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 50.0 bits (120), Expect = 4e-08
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R +LA AL P +L+LDEP LD + K + L ++ + G T + TH E
Sbjct: 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199
Query: 60 EARLLC 65
EA L
Sbjct: 200 EALELA 205
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 49.4 bits (118), Expect = 4e-08
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG ++R ++A AL P +L+LDEP LD + ++ + L+++ E+ TV++ TH ++
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176
Query: 60 EARLL 64
EA LL
Sbjct: 177 EALLL 181
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 49.6 bits (118), Expect = 4e-08
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++L++DEPT LDP + I D + ++ + T++I TH + +
Sbjct: 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQ 209
Query: 61 A 61
A
Sbjct: 210 A 210
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 49.1 bits (118), Expect = 4e-08
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R + LL PDL ILDEP GLD + + + + ++ E GK+V+I THY
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY--- 163
Query: 61 ARLL 64
RLL
Sbjct: 164 QRLL 167
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 49.5 bits (118), Expect = 5e-08
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R ++A AL NP +L+ DE T LDP ++SI + L E+ G T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202
Query: 60 EARLLC 65
+ +C
Sbjct: 203 VVKRIC 208
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 49.1 bits (117), Expect = 5e-08
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+Q+ ++ AL+ P LL+LDEP++GL P++ + I+D + ++ E G T+ + +
Sbjct: 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ 199
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDS 104
A L + Y ++ G ++ E++ +L+A V S
Sbjct: 200 ALKLADRGY-----------VLENGHVVLEDTGDALLANEAVRS 232
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 49.3 bits (117), Expect = 5e-08
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L P+++++DEPT LDP+ + I + ++ + E+ T++I TH +++
Sbjct: 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES-YTIIIVTHNMQQ 211
Query: 61 A 61
A
Sbjct: 212 A 212
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 49.6 bits (119), Expect = 6e-08
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG +RR +LA ALL PDLL+LDEPT LD
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Score = 43.8 bits (104), Expect = 5e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++ R LA LL P+LL+LDEPT LD
Sbjct: 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 49.3 bits (117), Expect = 6e-08
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ P++L++DEPT LDP+ + I + ++E+ + +++I TH + +
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTHSMAQ 286
Query: 61 AR 62
A+
Sbjct: 287 AQ 288
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 49.0 bits (117), Expect = 6e-08
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P++L++DEP LDP+ ++ I + + E+ T++I TH +++
Sbjct: 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHNMQQ 210
Query: 61 A 61
A
Sbjct: 211 A 211
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 49.1 bits (117), Expect = 6e-08
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L PD++++DEPT LDP+ + + + LV+ + +++I TH +++
Sbjct: 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV-EELVQELKKDYSIIIVTHNMQQ 228
Query: 61 A 61
A
Sbjct: 229 A 229
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 48.9 bits (117), Expect = 7e-08
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 13/68 (19%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV-------LSKSIWDRLVEMTENGKTVMI 53
GGQ++R +LA AL+H P LL+LDEP LD + L +S+W ++G TV++
Sbjct: 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW------QQHGFTVLL 189
Query: 54 TTHYIEEA 61
TH + EA
Sbjct: 190 VTHDVSEA 197
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 48.6 bits (116), Expect = 7e-08
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL+HNP +LI DE T LD S+ R + G+TV+I H
Sbjct: 141 GGQRQRIAIARALIHNPRILIFDEATSALD-YESEHAIMRNMHDICAGRTVIIIAH---- 195
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQ 116
RL + A I +M +G ++ + S L+A + + L QLQ
Sbjct: 196 -RL-------STVKNADRIIVMEKGRIVEQGSHDELLAENGL------YAYLYQLQ 237
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 49.3 bits (117), Expect = 7e-08
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG ++R LA AL NPD+L++DE LDP++ + D LV++ ++ +T++ +H ++
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAF 109
EA R I +M+ G ++ +P ++ D + T F
Sbjct: 227 EA-----------MRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 48.3 bits (115), Expect = 9e-08
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG+++R +LA L+ + +L+LDEP LDP L + D ++++ E TV++ TH E
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 60 EARLLCAKL 68
+A+ L ++
Sbjct: 191 DAKRLAQRV 199
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 48.2 bits (116), Expect = 9e-08
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG+Q+ ++A AL+ P LL+LDEP+ GL P + + I++ + E+ + G T+++
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198
Query: 60 EAR 62
A
Sbjct: 199 FAL 201
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 48.7 bits (117), Expect = 1e-07
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GQ +R +LA ALL LL+LDEPT LD + + L + T+M+ TH +E+
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV-THQLED 546
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 48.5 bits (116), Expect = 1e-07
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ P++L+LDEPT LDP+ + I + + E+ T++I TH +++
Sbjct: 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIVIVTHNMQQ 229
Query: 61 A 61
A
Sbjct: 230 A 230
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 48.3 bits (116), Expect = 1e-07
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R + LL P L ILDEP GLD K + + + + E G+ V+I THY
Sbjct: 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY--- 203
Query: 61 ARLL 64
RLL
Sbjct: 204 QRLL 207
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 48.6 bits (116), Expect = 1e-07
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R +LA ALL + +LILDE T LD + K I + L+ + + KT++ H
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAH---- 667
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
RL A+Q+ I ++ G ++ + S L+ R
Sbjct: 668 -RL-------SVAKQSDKIIVLDHGKIIEQGSHDELLDR 698
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 48.0 bits (115), Expect = 1e-07
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 1 GGQQRRTSLAVALLH-----NPD--LLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVM 52
GG+ +R LA +L NP LL+LDEP LD V ++ DRL+ E+ + G V+
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVV 187
Query: 53 ITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
+++H + R A + L+++G LLA ++ N
Sbjct: 188 MSSHDLNHT-----------LRHADRVWLLKQGKLLASGRRDEVLTPEN 225
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 48.0 bits (115), Expect = 1e-07
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R ++A AL++ P +L+LDEP LD L K + L + E G T + TH E
Sbjct: 133 GGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192
Query: 60 EA 61
EA
Sbjct: 193 EA 194
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.1 bits (114), Expect = 1e-07
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L P +++ DEPT LDP+ + I D ++ + ++ T++I TH +++
Sbjct: 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTHNMQQ 215
Query: 61 A 61
A
Sbjct: 216 A 216
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 48.1 bits (115), Expect = 1e-07
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R LA+ L + +++LDEPT LD + + E+ GKTV+ H + +
Sbjct: 141 GGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
A YC+ H++ ++ G ++A+ +P +M
Sbjct: 201 A---SR--YCD-----HLV-VLANGHVMAQGTPEEVM 226
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.9 bits (114), Expect = 1e-07
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ P +L++DEP LDPV + I + + E+ +N T+++ TH +++
Sbjct: 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHSMKQ 210
Query: 61 AR 62
A+
Sbjct: 211 AK 212
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 46.2 bits (110), Expect = 1e-07
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPT 26
GGQ++R ++A ALL P LL+LDEPT
Sbjct: 93 GGQKQRVAIARALLKKPKLLLLDEPT 118
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 47.7 bits (114), Expect = 2e-07
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A + P++L+LDEP LDP+ + I + + E+ ++ TV+I TH +++
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTHNMQQ 217
Query: 61 A 61
A
Sbjct: 218 A 218
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 47.7 bits (114), Expect = 2e-07
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R +A+AL + PDLLI DEPT LD + I D L E+ E G ++ TH +
Sbjct: 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG 219
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
R + A + +M+ G ++ + +L A
Sbjct: 220 IVR-----------KFADRVYVMQHGEIVETGTTETLFAA 248
Score = 38.8 bits (91), Expect = 3e-04
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R ++A AL+ P+L++LDEPT LD
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALD 458
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 47.5 bits (113), Expect = 2e-07
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ P+++++DEP LDP+ + I + + E+ E T++I TH +++
Sbjct: 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212
Query: 61 A 61
A
Sbjct: 213 A 213
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 47.7 bits (113), Expect = 2e-07
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L P +L+LDEP LDP+ + I + + E+ E +++I TH +++
Sbjct: 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQ 225
Query: 61 A 61
A
Sbjct: 226 A 226
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 46.9 bits (112), Expect = 2e-07
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
Q++R ++ V L P +L LDEPT GLD + +I L ++ ++G+ ++ T H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 47.0 bits (112), Expect = 3e-07
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG+++R ++A AL++ P L++ DEPT LD +K I+D ++E+ E + ++ TH +E
Sbjct: 144 GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203
Query: 60 EAR 62
A+
Sbjct: 204 LAK 206
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 47.4 bits (112), Expect = 3e-07
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+ LA L NP++L+LDEPT LDP ++ I + + + TV+I TH + +
Sbjct: 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQ 224
Query: 61 A 61
A
Sbjct: 225 A 225
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 47.2 bits (112), Expect = 3e-07
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q+R +A A+++ P +L+ DEPT LD LS+ I E G TV++ TH
Sbjct: 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 46.2 bits (110), Expect = 3e-07
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 1 GGQQRRTSLAVAL---LHNPD-LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG++ ++LA+ L P L ILDE GLDP +++ + ++E G V++ TH
Sbjct: 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139
Query: 57 Y 57
Sbjct: 140 L 140
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 46.3 bits (111), Expect = 3e-07
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GQQRR +LA L L ILDEP +D + L + E G V++TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 47.0 bits (112), Expect = 4e-07
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQQ+R S+A AL++ +++ DEPT LD + + L ++ + G TV+I TH
Sbjct: 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.0 bits (111), Expect = 4e-07
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A L P+++++DEP LDPV + I + + E+ +N T+ I TH +++
Sbjct: 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN-YTIAIVTHNMQQ 208
Query: 61 A 61
A
Sbjct: 209 A 209
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 46.5 bits (111), Expect = 4e-07
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56
GGQ++R ++A AL+H P L++ DEPT LD + + + + ++ E G T++I TH
Sbjct: 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.9 bits (111), Expect = 4e-07
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A + +P+++++DEP LDP+ + I D L+ + T++I TH +++
Sbjct: 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKLKEDYTIVIVTHNMQQ 207
Query: 61 A 61
A
Sbjct: 208 A 208
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 46.6 bits (111), Expect = 4e-07
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTH 56
GG+Q+R +LA A PD+L DEPT LD I D L + E G T+++ TH
Sbjct: 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 47.0 bits (112), Expect = 4e-07
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 3 QQRRTSLAVALLHNPDLLI-LDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
Q++R ++ V L+ P LL+ LDEPT GLD + SI + ++ ++G+ ++ T H
Sbjct: 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
Score = 29.7 bits (67), Expect = 0.46
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG+++R S+A A L + D T GLD
Sbjct: 212 GGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 47.0 bits (112), Expect = 4e-07
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GG+++R ++ ALL +P LL++DEP LD I L + E G ++ +H ++
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLET---AFLQLSQLQ 116
E R A + ++ +G + A A + A ++ L L +
Sbjct: 194 EV-----------LRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVA 242
Query: 117 EHNSKKG 123
EH+ G
Sbjct: 243 EHDQHYG 249
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.6 bits (110), Expect = 4e-07
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A AL P +L++DEP LDP+ + + + L+ + T+ I TH +++
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV-EELIHSLRSELTIAIVTHNMQQ 211
Query: 61 A 61
A
Sbjct: 212 A 212
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 46.9 bits (111), Expect = 4e-07
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ+RR +LA + + + L+LDEPT GLDP + + + + K +++ TH ++
Sbjct: 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDS-LETAFLQLSQLQEH 118
+ R A + +M EG +++ SP + + + + + +E +L QL
Sbjct: 213 QV-----------LRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYK 261
Query: 119 NSKKGTYL 126
KG L
Sbjct: 262 LKNKGIDL 269
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.5 bits (110), Expect = 4e-07
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A + P+++++DEP LDP+ + I + + E+ E T++I TH +++
Sbjct: 151 GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHNMQQ 209
Query: 61 A 61
A
Sbjct: 210 A 210
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 46.7 bits (111), Expect = 5e-07
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT-THYIE 59
GGQ++R ++A L NP ++ILDE T LDP +++ D + ++ +I+ TH +
Sbjct: 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204
Query: 60 EA 61
EA
Sbjct: 205 EA 206
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 45.6 bits (108), Expect = 1e-06
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R LA A+ +++LDEP G+D I L E+ + GKT++++TH +
Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204
Query: 61 ARLLC 65
C
Sbjct: 205 VTEFC 209
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 45.7 bits (109), Expect = 1e-06
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRL 41
GGQ++R +A AL+ NP +LILDE T LDP K I D L
Sbjct: 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL 658
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 45.5 bits (108), Expect = 1e-06
Identities = 21/61 (34%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A A+ +P+++++DEP LDP+ + + + + E+ +N T++I TH +++
Sbjct: 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN-YTIVIVTHSMQQ 224
Query: 61 A 61
A
Sbjct: 225 A 225
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 45.3 bits (108), Expect = 1e-06
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R +A AL NP L++ DEP LD + I + L ++ E G T + +H +
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171
Query: 60 EARLLC 65
R +
Sbjct: 172 VVRYIS 177
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 45.4 bits (108), Expect = 1e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++R +LA AL +P L++LDEP LD +++ + + + G TV++ TH
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 45.2 bits (107), Expect = 1e-06
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R +A + P+++++DEP LDP+ + I + + E+ +N T++I TH +++
Sbjct: 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTHNMQQ 215
Query: 61 A 61
A
Sbjct: 216 A 216
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 44.9 bits (107), Expect = 1e-06
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G+++ ++A A+L +P +LILDE T +D K I + L E G+T +I H
Sbjct: 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL-EKLMKGRTSIIIAH----- 196
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARR 100
RL + A I ++ +G ++ E + L+A++
Sbjct: 197 RL-------STIKNADKILVLDDGKIIEEGTHDELLAKK 228
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 44.8 bits (106), Expect = 2e-06
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GQQRR +LA LL L ILDEPT LD + + G V++TTH
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 44.6 bits (106), Expect = 2e-06
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R +LA L+ +L+LDEP LDP L + + ++ E T+++ TH+ E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191
Query: 60 EAR 62
+A
Sbjct: 192 DAA 194
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 45.3 bits (107), Expect = 2e-06
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEP-TVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
G + R A+++ NPD+L++DE +VG D +K D++ E E GKT+ +H + +
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVG-DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205
Query: 61 ARLLCAK 67
+ C K
Sbjct: 206 VKSFCTK 212
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 45.2 bits (107), Expect = 2e-06
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV----LSKSIWDRLVEMTENGKTVMITTH 56
G++ R +LA L+ P ++ILDEPT +DP+ ++ SI EM + T +I +H
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ---TFIIVSH 486
Query: 57 YIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
++ +C + LMR+G ++ P ++
Sbjct: 487 DMDFVLDVCDR-----------AALMRDGKIVKIGDPEEIVE 517
Score = 44.4 bits (105), Expect = 4e-06
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYIE 59
GG+++R LA L P L + DEPT LDP +K + + L E + +G ++++T+H+ E
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 45.0 bits (106), Expect = 2e-06
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+R ++A AL P +L++DEPT +D V S++I ++L+ +N ++I +H ++
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI-EKLITELKNEIAIVIVSHNPQQ 214
Query: 61 A 61
Sbjct: 215 V 215
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 44.8 bits (106), Expect = 2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R +LA +L P LL+LDEP LD L + +V++ E G T ++ TH E
Sbjct: 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211
Query: 60 EA 61
EA
Sbjct: 212 EA 213
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 44.6 bits (106), Expect = 2e-06
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKT-VMITTHYIE 59
GQQR + AL+ +P LLILDEP GLDP L++ + R V+ + G+T ++ +H+ E
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDP-LNRQLVRRFVDVLISEGETQLLFVSHHAE 463
Query: 60 EA 61
+A
Sbjct: 464 DA 465
Score = 43.1 bits (102), Expect = 1e-05
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE 43
G+ R+T L AL+ PDLLILDEP GLD V S+ L+
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLD-VASRQQLAELLA 179
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 44.5 bits (106), Expect = 2e-06
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A ALL NP +L+LDE T LD K + + L + G+T ++ H
Sbjct: 142 GGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIAH---- 196
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
RL R A +I +++ G ++ + + LMA++ V
Sbjct: 197 -RLS-------TIRNADLIAVLQNGQVVEQGTHDELMAQKGV 230
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 44.8 bits (106), Expect = 2e-06
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 3 QQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56
Q++R ++AV L+ NP ++ +DEPT GLD + +I R V T + G+TV+ T H
Sbjct: 1024 QRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIH 1077
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 44.6 bits (105), Expect = 2e-06
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQ++R ++A AL+ L+LDEPT GLDP + + + G V+I++H I+
Sbjct: 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI 199
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
+ +Y ++R+G +L +P + A
Sbjct: 200 YEISDAVY-----------VLRQGQILTHGAPGEVFAC 226
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 44.2 bits (105), Expect = 2e-06
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQ++R +L A++ P + ++DEP LD L + L + + G T + TH
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVL 87
EA + A I +M +G +
Sbjct: 193 EAMTM-----------ADRIAVMNDGQI 209
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 44.4 bits (105), Expect = 3e-06
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GG Q+R LA A +L++DEP LDP++ + D L+E+ KT++ +H ++
Sbjct: 167 GGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLD 226
Query: 60 EA 61
EA
Sbjct: 227 EA 228
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 44.3 bits (105), Expect = 3e-06
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +LA AL +P LL+LDEP LD + + + + ++ G T ++ TH E
Sbjct: 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196
Query: 60 EA 61
EA
Sbjct: 197 EA 198
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 44.1 bits (104), Expect = 3e-06
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG Q+R +A L+ P L+ +DEPT GLD + + D L + + G V+I TH +
Sbjct: 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG 210
Query: 60 EARLLCAKL 68
ARLL +L
Sbjct: 211 VARLLAQRL 219
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 44.2 bits (104), Expect = 5e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENG-KTVMITTHYI 58
GGQ++R ++A ALL P +L+LDE T LD K I +V++ + KT++ H I
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419
Score = 41.9 bits (98), Expect = 2e-05
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN 47
GGQ++R S+A A++ NP +LILDE T LD +KS + LV+ T N
Sbjct: 582 GGQKQRISIARAIIRNPKILILDEATSSLD---NKS--EYLVQKTIN 623
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 43.6 bits (103), Expect = 5e-06
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIE 59
GGQQ+R +LA AL+ P +L+ DEP LD L +S+ +++ E+ + T + TH
Sbjct: 139 GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198
Query: 60 EA 61
EA
Sbjct: 199 EA 200
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 43.1 bits (102), Expect = 6e-06
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY---I 58
GQQRR +LA L L ILDEPT LD + L G V++TTH +
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190
Query: 59 EEARLL 64
EAR L
Sbjct: 191 VEAREL 196
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.5 bits (102), Expect = 6e-06
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTH 56
GGQQ+R +A AL P +L++DEP GLDP+ S + + + + T++I +H
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 43.3 bits (102), Expect = 7e-06
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 13/91 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GG+++R ++A AL++NP L++ DEPT LD + SI+ L E+ G ++ TH ++
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAE 90
A+ + +RQ MR+G L AE
Sbjct: 208 LAKRM--------SRQLE----MRDGRLTAE 226
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 42.9 bits (102), Expect = 7e-06
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQQ++ ++A AL+ P LL+LDEPT G+ P + K I + + E G +++ Y++
Sbjct: 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193
Query: 60 EAR 62
AR
Sbjct: 194 FAR 196
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 43.3 bits (102), Expect = 8e-06
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEE 60
G+ ++ +A+AL + P LLI DEPT ++P I+ L + +N T+++ +H ++
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM 221
Query: 61 ARLLCAK---LYC 70
K LYC
Sbjct: 222 ISQWADKINVLYC 234
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 43.2 bits (102), Expect = 8e-06
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A AL+ P +LILDE T LD + + + + +TV++ H
Sbjct: 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAH---- 672
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
RL +A I ++++G ++ + LM +
Sbjct: 673 -RL-------STVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 43.2 bits (102), Expect = 8e-06
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GG Q+R +A L+ P L+ +DEPT GLD + + D L + E G V+I TH +
Sbjct: 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213
Query: 60 EARLLCAKL 68
ARLL +L
Sbjct: 214 VARLLADRL 222
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 43.1 bits (102), Expect = 9e-06
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH---Y 57
GGQ++R ++A ALL + +LILDE T LD ++I L E+ +N +T ++ H
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLST 541
Query: 58 IEEA 61
IE+A
Sbjct: 542 IEKA 545
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 42.9 bits (101), Expect = 1e-05
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R LA AL +L+LDEPT LD + + + ++GKT + H ++
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD- 200
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAF 109
L A+ YC+E + L+ +G + A PA ++ D+L AF
Sbjct: 201 ---LAAR-YCDE------LVLLADGRVRAAGPPADVL---TADTLRAAF 236
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 43.0 bits (101), Expect = 1e-05
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV--EMTENGKTVMITTHYI 58
GGQ++R SLA A+ N D+ + D+P +D + K I++ ++ E KT ++ TH I
Sbjct: 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822
Score = 28.4 bits (63), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GQ++ LA ALL +L+LDE T +D
Sbjct: 1425 GQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 42.7 bits (100), Expect = 1e-05
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R S+A A+ N D+ I D+P LD ++ ++D ++ GKT ++ T+
Sbjct: 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN---- 798
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAE 90
Q H + LM +L++E
Sbjct: 799 --------------QLHFLPLMDRIILVSE 814
Score = 32.6 bits (74), Expect = 0.046
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQ++ SLA ALL +L+LDE T +D V + S+ R + T+++ H +
Sbjct: 1375 GQRQLLSLARALLRRSKILVLDEATASVD-VRTDSLIQRTIREEFKSCTMLVIAHRLNTI 1433
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
+ C K I ++ G +L +SP L++R
Sbjct: 1434 -IDCDK-----------ILVLSSGQVLEYDSPQELLSR 1459
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 42.6 bits (101), Expect = 1e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG R+ +L AL+ NPD+L+LDEPT LD
Sbjct: 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 33.0 bits (76), Expect = 0.032
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++ R LA L +LLILDEPT LD
Sbjct: 443 GGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 42.6 bits (101), Expect = 1e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++RR +L LL PD+L+LDEPT LD
Sbjct: 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
Score = 30.3 bits (69), Expect = 0.27
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++ R LA L ++L+LDEPT LD
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 42.3 bits (100), Expect = 1e-05
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GQQRR +LA L L ILDEP LD + + G V++TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 42.5 bits (100), Expect = 1e-05
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 20/97 (20%)
Query: 1 GGQQRRTSLAVALLH-----NPD--LLILDEPTVGLDPVLSKSIWDR-LVEMTENGKTVM 52
GG+ +R LA +L NP LL+LDEP LD V +S DR L + + G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALDRLLSALCQQGLAIV 186
Query: 53 ITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLA 89
+++H + R AH L++ G LLA
Sbjct: 187 MSSHDLNHT-----------LRHAHRAWLLKRGKLLA 212
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 42.5 bits (101), Expect = 1e-05
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R ++A AL NP +L+ DE T LDP ++SI + L ++ E G T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202
Query: 60 EARLLC 65
+ +C
Sbjct: 203 VVKRIC 208
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 42.4 bits (100), Expect = 1e-05
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT--ENGKTVMIT 54
GG +R +A+A+ P LLI DEPT LD + I + L+E+ EN V+IT
Sbjct: 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT 211
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 42.3 bits (100), Expect = 2e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++R +LA AL +P L++LDEP LD ++ ++ G TV++ H
Sbjct: 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 41.4 bits (98), Expect = 2e-05
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q+R + A LLH P + LDE T LD ++ L E+ G TV+ H
Sbjct: 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGH 146
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 41.8 bits (98), Expect = 2e-05
Identities = 22/63 (34%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R +LA L+ +L+LDEP LDP+L + + + ++ +E +T+++ TH++
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 60 EAR 62
+AR
Sbjct: 191 DAR 193
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 42.0 bits (99), Expect = 2e-05
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE--NGKTVMIT 54
GG ++R +A+ALL P LLI DEPT LD + I L E+ N +MIT
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT 219
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 42.0 bits (100), Expect = 2e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++RR +L LL PD+L+LDEPT LD
Sbjct: 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 27.8 bits (63), Expect = 1.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++ R LA L ++L+LDEPT LD
Sbjct: 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 41.7 bits (98), Expect = 2e-05
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQQ+R ++A AL P +++ DE T LDP L + + + + +E+ T+++ TH +
Sbjct: 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208
Query: 60 EAR 62
AR
Sbjct: 209 FAR 211
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 41.8 bits (99), Expect = 2e-05
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 20/90 (22%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-----TENGKTVMITT 55
GG Q+R +A L+ +P L+ +DEPT GLD S+ RL+++ E G V+I T
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLD----VSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 56 HYIEEARLLCAKLYCEEARQAHIIGLMREG 85
H + ARLL AH + +M++G
Sbjct: 210 HDLAVARLL-----------AHRLLVMKQG 228
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 41.4 bits (98), Expect = 2e-05
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDP----VLSKSIWDRLVEMTENGKTVMITTHY 57
GQ+RR +LA L+ N + ILDEPT LD + ++ I L G V+ TH
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL----AQGGIVIAATHI 186
Query: 58 ---IEEARLL 64
+ AR L
Sbjct: 187 PLGLPGAREL 196
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 41.7 bits (98), Expect = 2e-05
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEP-TVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
G + + ++ + NPD+L++DE +VG D ++ D++ E E KT+ +H + +
Sbjct: 147 GMRAKLGFSINITVNPDILVIDEALSVG-DQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205
Query: 61 ARLLCAKL 68
R C K+
Sbjct: 206 VRQFCTKI 213
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 41.9 bits (99), Expect = 3e-05
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDP----VLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A AL DL +LDEP+ LD +++K I R +E N KT ++ H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI-RRFIE--NNEKTALVVDH 514
Query: 57 YI 58
I
Sbjct: 515 DI 516
Score = 38.0 bits (89), Expect = 5e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV------EMTENGKTVMIT 54
GG+ +R ++A ALL + D+ DEP+ LD I RL E+ E+GK V++
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLD------IRQRLNAARVIRELAEDGKYVIVV 269
Query: 55 TH 56
H
Sbjct: 270 EH 271
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 41.6 bits (98), Expect = 3e-05
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTH 56
GG+++R +A+ALL P+LLI DEPT LD + I L E+ E ++ TH
Sbjct: 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITH 215
Score = 41.6 bits (98), Expect = 3e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSI 37
GGQ++R ++A AL+ P L+ILDEPT LD + I
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 41.2 bits (96), Expect = 4e-05
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GGQ++R ++A + P+++ILDE T LDP + I + E+ E + TV+ TH ++
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
EA A I+ +M+ G ++ E +P+ L A
Sbjct: 203 EA-----------ASSDRIL-VMKAGEIIKEAAPSELFA 229
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 41.2 bits (97), Expect = 4e-05
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI-TTHYIE 59
GG+++R ++ ALL P+LL++DEP LD + I L + + ++ +H ++
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMAR 99
E R A + ++ G + A +
Sbjct: 191 EV-----------LRLADRVVVLENGKVKASGPLEEVWGS 219
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 40.9 bits (96), Expect = 4e-05
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG+ +R LA ALL+ P LL+LDEPT G+D
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 40.9 bits (96), Expect = 5e-05
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV 32
GG RR +LA A+ PDL++ DEP VG DP+
Sbjct: 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPI 177
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 40.5 bits (95), Expect = 5e-05
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58
GGQ++R ++A AL+ NP +LILDE T LD + + L + E +TV++ H +
Sbjct: 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTVLVIAHRL 209
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 40.7 bits (96), Expect = 6e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG Q++ LA LL NP +LILDEPT G+D
Sbjct: 408 GGNQQKAVLAKCLLLNPKILILDEPTRGID 437
Score = 32.6 bits (75), Expect = 0.044
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGL 29
GQQ+ +A AL LLILDEPT L
Sbjct: 146 LGQQQLVEIAKALNKQARLLILDEPTASL 174
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 40.6 bits (95), Expect = 6e-05
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ +R ++A AL P L++LDE LD VL I + L ++ G + TH +
Sbjct: 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR 212
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPAS 95
+ C ++ + Q I+ LL+ + PA
Sbjct: 213 LVQSFCQRVAVMDKGQ--IVEECDVAQLLSFKHPAG 246
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 40.6 bits (96), Expect = 6e-05
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDP----VLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A L + DL +LDEP+ LD ++K+I R+ E E T ++ H
Sbjct: 456 GGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI-RRIAE--EREATALVVDH 512
Query: 57 YI 58
I
Sbjct: 513 DI 514
Score = 34.0 bits (79), Expect = 0.014
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV------EMTENGKTVMIT 54
GG+ +R ++A ALL + D DEPT LD I RL E+ E K V++
Sbjct: 215 GGELQRVAIAAALLRDADFYFFDEPTSYLD------IRQRLNVARLIRELAEG-KYVLVV 267
Query: 55 TH 56
H
Sbjct: 268 EH 269
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 40.5 bits (95), Expect = 7e-05
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ++R ++A A+L + +L+LDE T LD S+ + + +E G+T +I H
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALD-AESEQLVQQALETLMKGRTTLIIAH---- 533
Query: 61 ARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMA 98
RL +A I +M +G ++A+ + A L+A
Sbjct: 534 -RLATVL-------KADRIVVMDQGRIVAQGTHAELIA 563
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 40.2 bits (95), Expect = 7e-05
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPT-VGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
G + R + A+A PD+L++DE VG D + RL E+ + GKTV++ +H
Sbjct: 146 GMKARLAFAIATALEPDILLIDEVLAVG-DAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204
Query: 61 ARLLC 65
+ LC
Sbjct: 205 IKRLC 209
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 40.4 bits (95), Expect = 7e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+++R ++A +L NP +LILDE T LD ++I L E++ T++I
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI 454
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 39.9 bits (94), Expect = 1e-04
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ++R ++A AL+ +PD+++ DEP LD
Sbjct: 157 GGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 39.8 bits (93), Expect = 1e-04
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R +A AL P LL+LDEPT LD + E+ G TV+ H +
Sbjct: 140 GGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199
Query: 61 ARLLC 65
A C
Sbjct: 200 AASYC 204
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 40.0 bits (94), Expect = 1e-04
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSI--WDRLVEMTENGKTVMITTHYI 58
GGQ++R +LA AL P +L+LDEP LD + K + W R + E T + TH
Sbjct: 139 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH-DELHVTTVFVTHDQ 197
Query: 59 EEA 61
EEA
Sbjct: 198 EEA 200
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 40.0 bits (94), Expect = 1e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDP 31
GG+Q+R + A LLH P + LDE T LD
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDE 548
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 39.8 bits (93), Expect = 1e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GGQ++R +LA AL P +L+LDEP LD + K + L ++ + T + TH E
Sbjct: 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192
Query: 60 EA 61
EA
Sbjct: 193 EA 194
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 39.9 bits (94), Expect = 1e-04
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G R + +VA PD+L+LDE D + +RL E+ E KT+++ +H +
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAI 210
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETA 108
+ C + + G + E SP ++ D +
Sbjct: 211 KQYCDR-----------AIWLEHGQIRMEGSPEEVIPAYEEDLADRL 246
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 40.1 bits (94), Expect = 1e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK-TVMITTHYIE 59
GGQ++R +LA AL P +L+LDEP LD + K + L ++ E K T + TH E
Sbjct: 139 GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198
Query: 60 EA 61
EA
Sbjct: 199 EA 200
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 39.9 bits (94), Expect = 1e-04
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+++R ++A ALL +P +LILDE T LD + L E+ + T +I
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII 526
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 39.9 bits (94), Expect = 1e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQQ+R ++A A+++ P +L+LDE LD L K + + L + + G T + TH E
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206
Query: 60 EA 61
EA
Sbjct: 207 EA 208
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 39.3 bits (92), Expect = 1e-04
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGK---TVMITTHY 57
GG+Q+R ++A + + +L+LDEPT LD +VE+ K +I +
Sbjct: 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANR----QVVVELIAEAKARGAALIGIFH 207
Query: 58 IEEARLLCA 66
EE R L A
Sbjct: 208 DEEVRELVA 216
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 39.9 bits (93), Expect = 1e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59
GGQ+ R SLA A+ + DL +LD P LD V K I++ + + KT ++ T +E
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609
Score = 34.1 bits (78), Expect = 0.015
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G ++ LA ++L +L+LDEP+ LDPV + I + ++ + + TV+++ H + EA
Sbjct: 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPV-TLQIIRKTLKQSFSNCTVILSEHRV-EA 1414
Query: 62 RLLC 65
L C
Sbjct: 1415 LLEC 1418
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 39.2 bits (92), Expect = 2e-04
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDP 31
GQQRR +A ++ P++L+LDEP GL+P
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 39.6 bits (93), Expect = 2e-04
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVMITTH---Y 57
GQ++R +L +AL D+L+LDE DP + + L+ + E GKT+ +H Y
Sbjct: 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512
Query: 58 IEEA-RLLCAKLYCEEARQAHIIGLMREGVL 87
A RLL MR G L
Sbjct: 513 FIHADRLL----------------EMRNGQL 527
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG Q++ LA LL NP +LILDEPT G+D
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
Score = 34.8 bits (80), Expect = 0.007
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQQ+ +A AL LLILDEP+ L ++ + D + ++ +G + +H + E
Sbjct: 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE 203
Query: 61 ARLLCAKL 68
+ +C +
Sbjct: 204 VKAVCDTI 211
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 39.0 bits (91), Expect = 2e-04
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56
GG+Q+R +LA A PD+L DEPT LD I D L + E+G T+++ TH
Sbjct: 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 39.4 bits (92), Expect = 2e-04
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 GGQQRRTSLAVAL--------LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVM 52
GG++ SLA+ L +LL LDEP LD + + + L E+ +G+ ++
Sbjct: 818 GGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQII 877
Query: 53 ITTH 56
I +H
Sbjct: 878 IISH 881
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 39.3 bits (92), Expect = 2e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GGQ++R ++A ALL + +LILDE T LD + + L + + T++I
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 39.0 bits (91), Expect = 2e-04
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVMITTH---Y 57
GQ++R +L +ALL D+L+LDE DP + + L+ + E GKT+ +H Y
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511
Query: 58 IEEA-RLL 64
A RLL
Sbjct: 512 FIHADRLL 519
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 39.2 bits (92), Expect = 2e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWD 39
GG Q++ ++A L+ P +LILDEPT G+D K I+
Sbjct: 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 38.7 bits (90), Expect = 2e-04
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDP----VLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R ++A ALL N + DEP+ LD +++I RL E E KT ++ H
Sbjct: 74 GGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI-RRLSE--EGKKTALVVEH 130
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 38.6 bits (90), Expect = 3e-04
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD---PVLSKSIWDRLVEMTENGKTVMITTHY 57
GG+++R +A+ + + L+LDEPT LD V ++ RL + E G TV+ H
Sbjct: 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ--ERGLTVIAVLHD 207
Query: 58 IEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
I A YC+ +++ L R G ++A+ +PA LM
Sbjct: 208 IN-----MAARYCD-----YLVAL-RGGEMIAQGTPAELM 236
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 38.7 bits (90), Expect = 3e-04
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVMITTHYIE 59
GGQ+ R +L ALL P L+LDEP LD L + E+ G + TH ++
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
Query: 60 EA 61
+
Sbjct: 197 DV 198
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 38.5 bits (90), Expect = 3e-04
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTV-MITTHYIE 59
GGQ +R LA AL P LLILDE LD VL + L ++ + T + TH +
Sbjct: 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR 213
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNV 102
C ++ + Q I+ G L SPA + + V
Sbjct: 214 LVERFCQRVMVMDNGQ--IVETQPVGDKLTFSSPAGRVLQNAV 254
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 38.4 bits (89), Expect = 3e-04
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R +A+ L +++LDEPT LD + + L E+ E G T+ H +
Sbjct: 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
+A C A +H+I L REG ++A+ +P ++
Sbjct: 206 QA--------CRYA--SHLIAL-REGKIVAQGAPKEIV 232
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 38.3 bits (89), Expect = 3e-04
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GGQ+ R SLA A+ + DL +LD P LD K I++ V KT ++ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 61 AR 62
+
Sbjct: 222 LK 223
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 38.2 bits (89), Expect = 4e-04
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDP---VLSKSIWDRLVEMTENGKTVMITTHY 57
GG+ +R ++A L + D+ +LDEP+ LD +++ + R E N KT + H
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE--NNEKTAFVVEHD 175
Query: 58 IEEARLLCAKL 68
I L +L
Sbjct: 176 IIMIDYLADRL 186
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 38.1 bits (89), Expect = 4e-04
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE-NGKTVMITTH 56
GG +R +A+ALL P LI DEPT LD V + L E+ + G +++ TH
Sbjct: 128 GGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 38.6 bits (90), Expect = 4e-04
Identities = 21/74 (28%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKS-IWDRLVEMTENGKTVMITTHYIE 59
GG Q++ ++ L P+++I DEPT G+D V +K+ I+ + ++ ++GK +++ + +
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGID-VGAKAEIYKVMRQLADDGKVILMVSSELP 470
Query: 60 EARLLCAKL--YCE 71
E +C ++ +CE
Sbjct: 471 EIITVCDRIAVFCE 484
Score = 27.4 bits (61), Expect = 2.0
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 9 LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLC 65
+A L+ + ++I+DEPT L ++ + ++ + G ++ +H + E R +C
Sbjct: 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC 212
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.3 bits (89), Expect = 4e-04
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG + R +LA AL PDLL+LDEPT LD L +W + + KT ++ +H
Sbjct: 347 GGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLWLE-TYLLKWPKTFIVVSH 399
Score = 30.2 bits (68), Expect = 0.27
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ+ R + A P +L+LDEP+ LD
Sbjct: 630 GGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 37.8 bits (88), Expect = 5e-04
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPV-------LSKSIWDRLVEMTENGKTVMI 53
GGQ++R ++A A+ P ++ILDE T LDP K I D + TV+
Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD------DYQMTVIS 196
Query: 54 TTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
TH ++E L L +M+ G + + +P L +R N
Sbjct: 197 ITHDLDEVALSDRVL------------VMKNGQVESTSTPRELFSRGN 232
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 37.6 bits (88), Expect = 5e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG+++R S+A AL+ +L D T GLD
Sbjct: 121 GGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 37.6 bits (88), Expect = 6e-04
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57
GG+++R + L P L ILDE GLD K + + + + E ++ +I THY
Sbjct: 147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 37.9 bits (88), Expect = 6e-04
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN-GKTVMITTHYIEE 60
G+ ++ +A+AL + P LLI DEPT ++P I+ L + +N T+++ +H ++
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM 221
Query: 61 ARLLCAK---LYC 70
K LYC
Sbjct: 222 LSQWADKINVLYC 234
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 37.6 bits (88), Expect = 7e-04
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM-TENGKTVMITTHYIE 59
GGQ++R +LA L+ +L+LDEP LDP L + + + ++ E T+++ +H +E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191
Query: 60 EA 61
+A
Sbjct: 192 DA 193
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 37.3 bits (87), Expect = 7e-04
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIE 59
GGQ++R +A+ L + D ++LDEP LD S I L + E GKT+++ H I
Sbjct: 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQEHN 119
A + + I ++ G ++ + SP ++ + L + ++E N
Sbjct: 198 FA-----------SCYSDHIVALKNGKVVKQGSPDEII---QPEILSEIYDMDIPVEEIN 243
Query: 120 SKK 122
KK
Sbjct: 244 GKK 246
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 37.6 bits (88), Expect = 7e-04
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 6 RTSLAVALLHNPDLLILDEPTVGLD 30
R LA AL NPD+L+LDEPT LD
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLD 187
Score = 28.7 bits (65), Expect = 0.84
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG++ R ++ P++L++DEPT +D
Sbjct: 441 GGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 37.3 bits (86), Expect = 8e-04
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDR--LVEMTENGKTVMITTHYI 58
GGQ++R +A AL N +++ LD+P LD LS + L + ++ +T+++ TH +
Sbjct: 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL 202
Query: 59 E 59
+
Sbjct: 203 Q 203
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 37.8 bits (88), Expect = 8e-04
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKT-VMIT 54
GGQ++R S+A A+ N D+ I D+P LD + + ++D+ ++ GKT V++T
Sbjct: 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797
Score = 32.4 bits (74), Expect = 0.048
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPT----VGLDPVLSKSI 37
GQ++ SLA ALL +L+LDE T V D ++ K+I
Sbjct: 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 37.1 bits (86), Expect = 0.001
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTHYIE 59
GG+++R +L L P +L+LDE T LD ++I + + + E V+ TH +
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
Query: 60 EA 61
+A
Sbjct: 196 QA 197
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 37.5 bits (87), Expect = 0.001
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYI 58
GGQ+ R SLA A+ N D+ +LD+P LD + + + + GKT ++ TH +
Sbjct: 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Score = 26.3 bits (58), Expect = 5.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 2 GQQRRTSLAVALLHNPDLLIL-DEPTVGLDPVLSKSI 37
GQ++ +A ALL IL DE T +DP L + I
Sbjct: 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 36.6 bits (84), Expect = 0.001
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT------ENGKTVMIT 54
G + R +LA+A PD+LILDE T LD + E TV++T
Sbjct: 63 GELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILT 122
Query: 55 TH 56
T+
Sbjct: 123 TN 124
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 37.1 bits (86), Expect = 0.001
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1 GGQQRRTSLAVALLH---NPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R LA LL P L +LDEPT GL K++ L +T G TV+I H
Sbjct: 812 GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Score = 34.4 bits (79), Expect = 0.010
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 GGQQRRTSLAVALLHNPDLL----ILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+Q RT+LA L +L+ ILDEP++GL P + + + + ++ + G TV++ H
Sbjct: 479 GGEQERTALAKHL--GAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH 536
Query: 57 YIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQ 111
+E + A + A I G G +L SP +A DSL +L+
Sbjct: 537 --DEQMISLADRIIDIGPGAGIFG----GEVLFNGSPREFLA--KSDSLTAKYLR 583
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 36.9 bits (85), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV-EMTENGKTVMITTH 56
GQQ+R +L A L + +L+ DE DP + ++ L+ ++ GKT++I +H
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 36.6 bits (85), Expect = 0.001
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++R S+A ALL N ++LILD+ +D I L + E G+TV+I+ H
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAH 508
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 36.6 bits (85), Expect = 0.002
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 13 LLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEARLLCAKLYCEE 72
L+ + +LILDEPT L P ++ ++ R+ E+ G ++ +H + E R L
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQL-------- 206
Query: 73 ARQAHIIGLMREG-VLLAEE 91
A I +MR+G + L+ +
Sbjct: 207 ---ADRISVMRDGTIALSGK 223
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG Q++ +A L +P LLI+DEPT G+D
Sbjct: 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSK-SIWDRLVEMTENGKTVMI 53
GG Q++ + LL P++L+LDEPT G+D V +K I+ + E+ + K ++I
Sbjct: 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGID-VGAKFEIYQLIAELAKKDKGIII 446
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 36.1 bits (84), Expect = 0.002
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 29/120 (24%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD----PVLSKSIWDRLVEMTENGKTVMITTH 56
GGQ++R +A AL+ P +L+ DE T LD ++S+S+ +RL T ++ H
Sbjct: 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL-ERL------KVTRIVIAH 643
Query: 57 YIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFLQLSQLQ 116
RL R A I ++ G ++ + + LMAR + F QL++ Q
Sbjct: 644 -----RL-------STIRNADRIYVLDAGRVVQQGTYDELMAREGL------FAQLARRQ 685
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 36.3 bits (84), Expect = 0.002
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIW 38
GG + R +LA AL+ DLL+LDEPT LD L IW
Sbjct: 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIW 187
Score = 32.8 bits (75), Expect = 0.036
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE 43
GG++ R LA+ + P+LL+LDEPT LD + +++ + L++
Sbjct: 433 GGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID 475
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 35.4 bits (82), Expect = 0.004
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVE-MTENGKTVMITTH 56
GG +R +A+ALL +I DEPT LD V I D L + + +++ TH
Sbjct: 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 35.3 bits (82), Expect = 0.004
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 GGQQRRTSLAVALLHNPD----LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R LA L L ILDEPT GL K + + L + + G TV++ H
Sbjct: 172 GGEAQRIKLAKELS-KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 35.2 bits (81), Expect = 0.005
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+++R ++A A+L N +L+LDE T LD + + + + +N +T I H +
Sbjct: 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN-RTTFIIAHRLST 532
Query: 61 ARLLCAKLYCEEAR-------------QAHIIGLMREGVLLAEE 91
R L+ ++ R L+R LL +
Sbjct: 533 VRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGLLTNQ 576
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 34.2 bits (79), Expect = 0.007
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1 GGQQRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R LA L P L ILDEP+ GL + + + + + G TV++ H
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 34.5 bits (80), Expect = 0.007
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG+++R ++ ALL P+LL++DEP LD
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 34.6 bits (80), Expect = 0.008
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1 GGQQRRTS-LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59
GG+++R L +ALL + +L ILDE GLD K I + + ++ + ++++ THY
Sbjct: 154 GGEKKRNEILQMALL-DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY-- 210
Query: 60 EARLL 64
RLL
Sbjct: 211 -QRLL 214
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 33.7 bits (78), Expect = 0.011
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 6 RTSLAVALLHNPDLLILDEPTVGLDP 31
R +LA N +L LDEPT LD
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 34.1 bits (78), Expect = 0.013
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
G ++ LA ++L +L+LDEP+ LDP+ + I + ++ TV+++ H I EA
Sbjct: 142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRI-EA 199
Query: 62 RLLCAKLYCEEARQAH----IIGLMREGVLLAEE-SPASLM----ARRNVDSLETAFLQL 112
L C + E + I L+ E + SP+ + R + S Q+
Sbjct: 200 MLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRRNSSKSKRKPRPQI 259
Query: 113 SQLQE 117
LQE
Sbjct: 260 QALQE 264
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 33.8 bits (77), Expect = 0.013
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GQ+R+ +L + L +LDEP V LD + +I ++ E G V++T+H
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 33.7 bits (77), Expect = 0.014
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQ++ LA A + +LI+DE T +D + +++I ++V +TV+ H +
Sbjct: 160 GQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMTAFADRTVVTIAHRV--- 215
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRN 101
A ++ ++ G+L+ ++P +L+A+ +
Sbjct: 216 ---------STILDADLVLVLSRGILVECDTPENLLAQED 246
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 33.7 bits (77), Expect = 0.017
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTHYIEE 60
GQ+ R LA L P++L++DE LD + + + ++ E+ E G T+++ TH E
Sbjct: 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
Query: 61 ARLL 64
L
Sbjct: 571 GNAL 574
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 33.7 bits (78), Expect = 0.018
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKS-IWDRLVEMTENGKTVMITTHYIE 59
GG Q++ L L + +++LDEPT G+D V +K I++ + E+ G V+ + +
Sbjct: 399 GGNQQKAILGRWLSEDMKVILLDEPTRGID-VGAKHEIYNVIYELAAQGVAVLFVSSDLP 457
Query: 60 EARLLCAKLYCEEARQAHIIGLMREGVLLAE 90
E + + I +MREG + E
Sbjct: 458 EVLGVADR-----------IVVMREGRIAGE 477
Score = 25.6 bits (57), Expect = 7.8
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQ++ +A AL N ++ DEPT L + ++ + E+ G+ ++ +H +EE
Sbjct: 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI 203
Query: 62 RLLC 65
LC
Sbjct: 204 FALC 207
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.1 bits (76), Expect = 0.021
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GGQ +R +A AL+ P L+I DEP LD
Sbjct: 164 GGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 33.3 bits (76), Expect = 0.025
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRL-VEMTENGKTVMITTH 56
GG ++R +A+AL P +LI DEPT LD + I + V E V+ TH
Sbjct: 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227
Score = 30.2 bits (68), Expect = 0.24
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEM 44
GGQ++R +A AL NP ++I DE LD + I + L+++
Sbjct: 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 32.8 bits (76), Expect = 0.026
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 1 GGQQRRTSLAVAL--LHNPD----LLILDEPTVGLDP 31
GG+Q+R LA L L PD L+LDEPT LD
Sbjct: 137 GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 32.8 bits (75), Expect = 0.027
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 18 DLLILDEPTVGLDPVLSKSIWDRLVEMT-ENGKTVMITTH 56
+L++DEP L P L K + L ++ +N K ++ITTH
Sbjct: 276 IILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTH 315
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 32.2 bits (74), Expect = 0.045
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 GGQQRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R LA + L +LDEP++GL P + + + L + + G TV++ H
Sbjct: 140 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 32.0 bits (73), Expect = 0.048
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 14 LHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
+ + ILDEP L P + L ++ ++G ++I TH
Sbjct: 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 32.0 bits (73), Expect = 0.052
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEE 60
GG+Q+R ++A + + +L+LDEPT LD + + + E G ++ + EE
Sbjct: 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARG-AALVGIFHDEE 213
Query: 61 AR 62
R
Sbjct: 214 VR 215
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 31.9 bits (73), Expect = 0.057
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIEEA 61
GQ++ + + L +P LL+LDEP G+ ++ + L + ++++ H +
Sbjct: 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFV 209
Query: 62 RLLCAKLYCEEARQAHIIGLMREGVLLAEES 92
R + K+ + EG +LAE S
Sbjct: 210 REIADKVTV-----------LHEGSVLAEGS 229
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 31.7 bits (72), Expect = 0.065
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 GGQQRRTS-LAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHY 57
GG+++R L +A+L P+L ILDE GLD K + D + + + ++ +I THY
Sbjct: 148 GGEKKRNDILQMAVL-EPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 31.4 bits (72), Expect = 0.070
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 19 LLILDEPTVGLDPV----LSKSIWDRLVEMTENGKTVMITTHYIE 59
L++LDE G DPV L+ +I + L+E G V+ TTHY E
Sbjct: 111 LVLLDELGSGTDPVEGAALAIAILEELLE---RGALVIATTHYGE 152
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 31.3 bits (72), Expect = 0.080
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDP 31
GQ++ LA ALL +L+LDE T +DP
Sbjct: 143 GQRQLLCLARALLRKSKILVLDEATASVDP 172
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 31.6 bits (72), Expect = 0.086
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 1 GGQQRRTSLAVAL--LHNP----DLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GG+Q+R LA L L P L LDEPT LD ++ G V+
Sbjct: 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197
Query: 55 THYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAF 109
H L A Y + I L+ +G ++A SP ++ ++LE +
Sbjct: 198 LH-----DLNLAAQYADR------IVLLHQGRVIASGSPQDVL---TDETLERVY 238
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 31.8 bits (73), Expect = 0.087
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 1 GGQQRRTSLAVALL---HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R LA L L ILDEPT GL K + + L + + G TV++ H
Sbjct: 825 GGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883
Score = 26.4 bits (59), Expect = 4.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 GGQQRRTSLAVALLHNPD--LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GG+ +R LA + L +LDEP++GL ++ + + L + + G TV++ H
Sbjct: 484 GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 31.1 bits (71), Expect = 0.12
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 1 GGQQRRTSLAVALLH---NPDLLILDEPTVGL---DPVLSKSIWDRLVEMTENGKTVMIT 54
GG+ +R LA L L ILDEPT GL D + RLV + G TV++
Sbjct: 832 GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV---DKGNTVVVI 888
Query: 55 TH 56
H
Sbjct: 889 EH 890
Score = 27.3 bits (61), Expect = 2.3
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 1 GGQQRRTSLA-------VALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GG+ +R LA +L+ +LDEP++GL ++ + + L + + G T+++
Sbjct: 491 GGEAQRIRLATQIGSGLTGVLY-----VLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIV 545
Query: 54 TTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLMARRNVDSLETAFL 110
H +E + A + A G G ++A +P ++A N DSL +L
Sbjct: 546 VEH--DEDTIRAADYVIDIGPGAGEHG----GEVVASGTPEEILA--NPDSLTGQYL 594
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 30.4 bits (69), Expect = 0.17
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLV------EMTENGKTVMIT 54
GG+ +R ++A AL + D DEP+ LD I RL E+ E+ V++
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLD------IKQRLNAARLIRELAEDDNYVLVV 195
Query: 55 TH 56
H
Sbjct: 196 EH 197
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 30.6 bits (69), Expect = 0.18
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE 46
GQ++R +LA AL+ P ++I DE LD + + + ++E+ E
Sbjct: 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE 197
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 30.0 bits (68), Expect = 0.25
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLDPVL 33
GGQ++R ++ L+ P + +LDEP LD L
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 29.7 bits (67), Expect = 0.32
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH 56
GQ++ LA ALL P +L+LDE T +D + ++ + + T++ H
Sbjct: 129 GQRQLLCLARALLKRPRVLVLDEATASID-YATDALIQKTIREEFTNSTILTIAH 182
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 29.8 bits (67), Expect = 0.34
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTE 46
GQ++R LA AL+ P ++I DE LD + + + ++E+ E
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 29.6 bits (67), Expect = 0.35
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 1 GGQQRRTSLAVALL-----HNPD-LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMIT 54
GG+ ++ A+AL+ P +LDE LDP + + D + EM ++ ++
Sbjct: 97 GGE--KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 55 TH 56
T
Sbjct: 155 TL 156
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 29.3 bits (66), Expect = 0.48
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMI 53
GQ++ +LA L+ P +LILDE T +D ++I L + E+ V+I
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVI 531
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 0.50
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 16 NPDLLIL-DEPTVGLDPV----LSKSIWDRLVEMTENGKTVMITTHYIE 59
+ + L+L DE G DP L+ SI + L + G ++ TTHY E
Sbjct: 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKE 451
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 29.1 bits (66), Expect = 0.51
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGL 29
GQ++ + + L+ +P LL+LDEP G+
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 29.0 bits (65), Expect = 0.56
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 2 GQQRRTSLAVALLHNPDLLILDEPTVGLDP 31
GQ++R +LA L L +LDEP LD
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 1.0
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 6 RTSLAVALLHNPDLLILDEPTVGLDPVLSKSIWDRLVEMTEN 47
R +L++ L N LLILDEPT P L + +LV++ E
Sbjct: 802 RLALSLYLAGNIPLLILDEPT----PFLDEERRRKLVDIMER 839
>gnl|CDD|173876 cd08511, PBP2_NikA_DppA_OppA_like_5, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This
family represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant
sequence similarity to NikA, the initial nickel
receptor. The DppA binds dipeptides and some
tripeptides and is involved in chemotaxis toward
dipeptides, whereas the OppA binds peptides of a wide
range of lengths (2-35 amino acid residues) and plays a
role in recycling of cell wall peptides, which
precludes any involvement in chemotaxis. Most of other
periplasmic binding proteins are comprised of only two
globular subdomains corresponding to domains I and III
of the dipeptide/oligopeptide binding proteins. The
structural topology of these domains is most similar to
that of the type 2 periplasmic binding proteins (PBP2),
which are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2
bind their ligand in the cleft between these domains in
a manner resembling a Venus flytrap. After binding
their specific ligand with high affinity, they can
interact with a cognate membrane transport complex
comprised of two integral membrane domains and two
cytoplasmically located ATPase domains. This
interaction triggers the ligand translocation across
the cytoplasmic membrane energized by ATP hydrolysis.
Besides transport proteins, the PBP2 superfamily
includes the ligand-binding domains from ionotropic
glutamate receptors, LysR-type transcriptional
regulators, and unorthodox sensor proteins involved in
signal transduction.
Length = 467
Score = 27.6 bits (62), Expect = 1.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 22 LDEPTVGLDPVLSKS---------IWDRLVEMTENGKTV 51
L+ LDP LS++ + D+LV++ + K V
Sbjct: 7 LEADPDRLDPALSRTFVGRQVFAALCDKLVDIDADLKIV 45
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 27.5 bits (61), Expect = 2.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 2 GQQRRTSLAVALL--HNPDLLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTHYIE 59
G R +LA LL P LL+LDEP L P L ++ L+ V+++TH
Sbjct: 274 GTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPAL-AELMRSAAKRSQVIVSTHSPR 332
Query: 60 EARLL 64
+
Sbjct: 333 LLNAV 337
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 27.3 bits (62), Expect = 2.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 16/46 (34%)
Query: 19 LLILDEPTVGLDP--------VLSKSIWDRLVEMTENGKTVMITTH 56
L ILDEPT GL VL RLV + G TV++ H
Sbjct: 854 LYILDEPTTGLHFEDIRKLLEVL-----HRLV---DKGNTVVVIEH 891
>gnl|CDD|221814 pfam12863, DUF3821, Domain of unknown function (DUF3821). This is
a domain largely confined to sequences from
Methanomicrobiales found on putative lipases. The
function is not known.
Length = 203
Score = 27.4 bits (61), Expect = 2.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 30 DPVLSKSIWDRLVEMTENGKTV 51
DP L+ +WD G TV
Sbjct: 82 DPSLALDVWDANTNRDVTGGTV 103
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 27.5 bits (61), Expect = 2.2
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Query: 1 GGQQRRTSLAVAL--LHNPD-------LLILDEPTVGLDPVLSKSIWDRLVEMTENGKT- 50
GG+ R A L L P L+LDEPT LD + D + + +
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLG 207
Query: 51 VMITTHYIEEARLLCAKLYCEEARQAHIIGLMREGVLLAEESPASLM 97
V+ H A AR A I ++ +G ++A +PA ++
Sbjct: 208 VLAIVHDPNLA-----------ARHADRIAMLADGAIVAHGAPADVL 243
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 27.4 bits (61), Expect = 2.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPTVGLD 30
GG+++R SL L P +L+LDE T LD
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALD 169
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 27.2 bits (60), Expect = 2.7
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 19 LLILDEPTVGLDPVLSKSIWDRLVEMTENGKTVMITTH---YIEEARLLCAK 67
L+I++ P L P + D L E+ G V++ TH I RL+ +
Sbjct: 263 LIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIINGLRLIVLE 314
>gnl|CDD|105560 PRK12339, PRK12339, 2-phosphoglycerate kinase; Provisional.
Length = 197
Score = 27.1 bits (60), Expect = 2.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 16/71 (22%)
Query: 6 RTSLAVALLHNPDLLI------LDE---PTVGLDPVLSKSI---WDRLVEMTENGKTVMI 53
+TS++ + + + I L E P V +PVL+KS+ W+ MT+ I
Sbjct: 16 KTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDEN----I 71
Query: 54 TTHYIEEARLL 64
Y+++AR +
Sbjct: 72 VKGYLDQARAI 82
>gnl|CDD|187885 cd09755, Cas2_I-E, CRISPR/Cas system-associated protein Cas2.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas2 is present in majority of CRISPR/Cas systems along
with Cas1; RNAse specific to U-rich regions; Possesses
an RRM/ferredoxin fold.
Length = 62
Score = 25.6 bits (57), Expect = 3.1
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 36 SIWDRLVEMTENGKTVMI 53
+W+++ E +G VM+
Sbjct: 16 RLWEKVTEGIGDGSAVMV 33
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.2 bits (60), Expect = 3.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 6 RTSLAVALLHNPDLLILDEPTVGLD 30
R ++A L ++ LLI+DEPT LD
Sbjct: 815 RVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 25.2 bits (56), Expect = 4.3
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 14/44 (31%)
Query: 1 GGQQRRTSLAVALL-------------HNPDLLILDEPTVGLDP 31
GG+ ++ +AL P L+ LDE LD
Sbjct: 25 GGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 26.6 bits (59), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1 GGQQRRTSLAVALLHNPDLLILDEPT 26
GG+++R ++A H P ILDE T
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECT 610
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 25.6 bits (57), Expect = 8.6
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 33 LSKSIWDRLVEMTEN--GKTVMITT 55
LS+ +WDRL + E G+ + + T
Sbjct: 346 LSQDVWDRLDRVAEATCGERIRMMT 370
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 25.4 bits (56), Expect = 9.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 3 QQRRTSLAVALLHNPDLLILDEPT------VGLDPVLSKSIWDRLVE 43
Q R + A L + L P+ VG DPVL K I D L++
Sbjct: 304 HQDRVARLRARLDKAGIPHLPNPSHIVPVMVG-DPVLCKQISDELLD 349
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,458,825
Number of extensions: 570081
Number of successful extensions: 1022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 408
Length of query: 128
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 42
Effective length of database: 7,123,158
Effective search space: 299172636
Effective search space used: 299172636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)